Citrus Sinensis ID: 027785

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MANSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRILFLCGVSFCFQNLLE
Secondary Structure (PSIPRED)
cccccccccEEEEEEccccHHHHHHHHHHHHHHcccEEEEEccccccccccccEEccccccccccccccEEEEEcccccccccccccEEEEccccccHHHccccHHHHHHHHHHHccccEEEEccHHHHHHHHcccccEEEEcccccHHHHHHcccEEEccccccEEEEcccEEEccccccHHHHHHHHHHHHcccccccccEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHEEEEEcccHHHHHHHHHHHHHHHHccEEEEEccccccccEEEEEEEccccccccccccccEEEccEEHHHccHHHccEEEEccEcHHHHHcccHHHHHHHHHHHHccccEEEEcccHHHHHHHccccccEEcccHHHHHHHHHcccEEcccccEHHEEEcccEEccccccccHHHHHHHHHHHccEEcccccEEEEEEcHHHHHHHHcc
Coil and Loop (DISEMBL)
manskggkrSVLLLCGDYMEDYEAMVPFQALLAFGvsvdaacpgkksgdvcptavhqstghqtysetrghnfalnatfdeidptkydglvipggrapeylamnDSVIDLVRKFSNSGKTIASICHGQLILAAADVvkgrkctayppvkpVLIAagaswiepetMAACVvdgniitgatyegHPEFIRLFLKAlggtitgsdkRILFLCGVSFCFQNLLE
Flexible Loop (DISEMBL)
manskggkrsVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQstghqtysetrGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRILFLCGVSFCFQNLLE
Low Complexity Region (SEG)
MANSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRILFLCGVSFCFQNLLE
Disordered region (IsUnstruct)
*********SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRILFLCGVSFCFQNL**
Disordered Region (DISOPRED)
******G****LLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRILFLCGVSFCFQNLLE
Disordered Region (DISEMBL)
********RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRILFLCGVSFCFQNLLE
Disordered Region (DISPRO)
*A*SKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRILFLCGVSFCFQNLLE
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MANSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRILFLCGVSFCFQNLLE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	219	2.2.26 [Sep-21-2011]
Q9M8R4	388	Protein DJ-1 homolog D OS	yes	no	0.936	0.528	0.741	1e-88
O59413	166	Intracellular protease 1	yes	no	0.748	0.987	0.347	4e-25
Q9V1F8	166	Intracellular protease 1	yes	no	0.726	0.957	0.338	2e-24
Q51732	166	Intracellular protease 1	yes	no	0.730	0.963	0.353	4e-24
Q5JGM7	166	Intracellular protease 1	yes	no	0.721	0.951	0.349	2e-22
O28987	168	Uncharacterized protein A	yes	no	0.748	0.976	0.315	5e-19
P45470	172	Protein YhbO OS=Escherich	N/A	no	0.757	0.965	0.303	5e-18
O06006	169	Putative cysteine proteas	yes	no	0.757	0.982	0.275	7e-14
Q58377	205	Uncharacterized protein M	yes	no	0.593	0.634	0.34	1e-13
P80876	172	General stress protein 18	no	no	0.771	0.982	0.256	3e-12

>sp|Q9M8R4|DJ1D_ARATH Protein DJ-1 homolog D OS=Arabidopsis thaliana GN=DJ1D PE=1 SV=1

 Score =  325 bits (834), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 155/209 (74%), Positives = 176/209 (84%), Gaps = 4/209 (1%)

Query: 1   MANSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTG 60
           MANS    R+VL+LCGDYMEDYE MVPFQAL AFG++V   CPGKK+GD CPTAVH   G
Sbjct: 1   MANS----RTVLILCGDYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCG 56

Query: 61  HQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTI 120
           HQTY E+RGHNF LNATFDE+D +KYDGLVIPGGRAPEYLA+  SV++LV++FS SGK I
Sbjct: 57  HQTYFESRGHNFTLNATFDEVDLSKYDGLVIPGGRAPEYLALTASVVELVKEFSRSGKPI 116

Query: 121 ASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYE 180
           ASICHGQLILAAAD V GRKCTAY  V P L+AAGA W+EP T   CVVDG++IT ATYE
Sbjct: 117 ASICHGQLILAAADTVNGRKCTAYATVGPSLVAAGAKWVEPITPDVCVVDGSLITAATYE 176

Query: 181 GHPEFIRLFLKALGGTITGSDKRILFLCG 209
           GHPEFI+LF+KALGG ITG++KRILFLCG
Sbjct: 177 GHPEFIQLFVKALGGKITGANKRILFLCG 205

May be involved in oxidative stress response.
Arabidopsis thaliana (taxid: 3702)

>sp|O59413|PFPI_PYRHO Intracellular protease 1 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=pfpI PE=1 SV=1

 Score =  114 bits (286), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 64/184 (34%), Positives = 98/184 (53%), Gaps = 20/184 (10%)

Query: 10  SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRG 69
            VL L  +  ED E + P+  L   G  V  A                S    T +   G
Sbjct: 2   KVLFLTANEFEDVELIYPYHRLKEEGHEVYIA----------------SFERGTITGKHG 45

Query: 70  HNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI 129
           ++  ++ TFD+++P ++D LV+PGGRAPE + +N+  + + RK  + GK +ASICHG  I
Sbjct: 46  YSVKVDLTFDKVNPEEFDALVLPGGRAPERVRLNEKAVSIARKMFSEGKPVASICHGPQI 105

Query: 130 LAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLF 189
           L +A V++GRK T+YP +K  +I AG  W++ E     VVDGN ++         ++R F
Sbjct: 106 LISAGVLRGRKGTSYPGIKDDMINAGVEWVDAE----VVVDGNWVSSRVPADLYAWMREF 161

Query: 190 LKAL 193
           +K L
Sbjct: 162 VKLL 165

Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (taxid: 70601)

EC: 3

EC: .

EC: 2

EC: .

EC: -

EC: .

EC: -

>sp|Q9V1F8|PFPI_PYRAB Intracellular protease 1 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=pfpI PE=3 SV=1

 Score =  112 bits (281), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 97/183 (53%), Gaps = 24/183 (13%)

Query: 11  VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGH 70
           VL+L  D  ED E + P+  L   G  V  A                S      +   G+
Sbjct: 3   VLILSADQFEDVELIYPYHRLKEEGHEVLVA----------------SFKRGVITGKHGY 46

Query: 71  NFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL 130
              ++  F+E++P ++D LV+PGGRAPE + +N+  +++ +K  + GK +ASICHG  IL
Sbjct: 47  TVNVDLAFEEVNPDEFDALVLPGGRAPERVRLNEKAVEIAKKMFSEGKPVASICHGPQIL 106

Query: 131 AAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIIT----GATYEGHPEFI 186
            +A V++GR+ T+YP +K  +I AG  W++ E     VVDGN ++    G  Y    EF+
Sbjct: 107 ISAGVLRGRRGTSYPGIKDDMINAGVDWVDAE----VVVDGNWVSSRVPGDLYAWMREFV 162

Query: 187 RLF 189
           +L 
Sbjct: 163 KLL 165

Pyrococcus abyssi (strain GE5 / Orsay) (taxid: 272844)

EC: 3

EC: .

EC: 2

EC: .

EC: -

EC: .

EC: -

>sp|Q51732|PFPI_PYRFU Intracellular protease 1 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=pfpI PE=1 SV=1

 Score =  111 bits (277), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 65/184 (35%), Positives = 97/184 (52%), Gaps = 24/184 (13%)

Query: 10  SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRG 69
            +L L  +  ED E + P+  L   G  V  A   K       T  H            G
Sbjct: 2   KILFLSANEFEDVELIYPYHRLKEEGHEVYIASFEKG----VITGKH------------G 45

Query: 70  HNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI 129
           ++  ++ TFDE++P ++D LV+PGGRAPE + +N+  +++ RK    GK +A+ICHG  I
Sbjct: 46  YSVKVDLTFDEVNPDEFDALVLPGGRAPERVRLNEKAVEIARKMFTEGKPVATICHGPQI 105

Query: 130 LAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIIT----GATYEGHPEF 185
           L +A V+KGRK T+Y  ++  +I AG  WI+ E     VVDGN ++    G  Y    EF
Sbjct: 106 LISAGVLKGRKGTSYIGIRDDMINAGVEWIDRE----VVVDGNWVSSRHPGDLYAWMREF 161

Query: 186 IRLF 189
           ++L 
Sbjct: 162 VKLL 165

Highly stable protease. Although the physiological function is unclear it is the dominant protease in P.furiosus.

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

EC: 3

EC: .

EC: 2

EC: .

EC: -

EC: .

EC: -

>sp|Q5JGM7|PFPI_PYRKO Intracellular protease 1 OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=pfpI PE=3 SV=1

 Score =  105 bits (263), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/186 (34%), Positives = 94/186 (50%), Gaps = 28/186 (15%)

Query: 10  SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAAC--PGKKSGDVCPTAVHQSTGHQTYSET 67
            VL+L  D  ED E + P   +   G  V  A    GK +G                   
Sbjct: 2   KVLILSADGFEDLELIYPLHRIKEEGHEVYVASFQRGKITG------------------K 43

Query: 68  RGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127
            G+   ++  FDE+DP ++D LV+PGGRAPE + +N+  + + +K    GK +ASICHG 
Sbjct: 44  HGYTVNVDLAFDEVDPDEFDALVLPGGRAPEIVRLNEKAVAITKKMFEDGKPVASICHGP 103

Query: 128 LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIIT----GATYEGHP 183
            IL +A V+KGRK T+   ++  +  AGA WI+ E     VVDGN ++    G  Y    
Sbjct: 104 QILISAGVLKGRKGTSTVTIRDDVKNAGAEWIDAE----VVVDGNWVSSRHPGDLYAWMR 159

Query: 184 EFIRLF 189
           EF++L 
Sbjct: 160 EFVKLL 165

Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (taxid: 69014)

EC: 3

EC: .

EC: 2

EC: .

EC: -

EC: .

EC: -

>sp|O28987|Y1281_ARCFU Uncharacterized protein AF_1281 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_1281 PE=3 SV=1

 Score = 94.4 bits (233), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 93/184 (50%), Gaps = 20/184 (10%)

Query: 10  SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRG 69
            VL+L  +  ED E   P   L   G+ V  A                S+  +     +G
Sbjct: 2   RVLILAENEFEDLELFYPLYRLREEGLEVKVA----------------SSSLEVRVGKKG 45

Query: 70  HNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI 129
           +    + T++++    Y GLVIPGG++PE + +N+  +++V+ F   GK +A+ICHG  +
Sbjct: 46  YQVRPDLTYEDVKVEDYAGLVIPGGKSPERVRINERAVEIVKDFLELGKPVAAICHGPQL 105

Query: 130 LAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLF 189
           L +A  VKGR+ T++  ++  LIAAGA + +       VVDGN+IT    +  P F    
Sbjct: 106 LISAMAVKGRRMTSWIGIRDDLIAAGALYED----RPVVVDGNVITSRMPDDLPYFCGEL 161

Query: 190 LKAL 193
           +K L
Sbjct: 162 IKIL 165

Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325)

>sp|P45470|YHBO_ECOLI Protein YhbO OS=Escherichia coli (strain K12) GN=yhbO PE=1 SV=2

 Score = 91.3 bits (225), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 93/191 (48%), Gaps = 25/191 (13%)

Query: 9   RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR 68
           + + +L  D  ED E   P       G  V                + +  G     +  
Sbjct: 3   KKIAVLITDEFEDSEFTSPADEFRKAGHEV--------------ITIEKQAGKTVKGKKG 48

Query: 69  GHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128
             +  ++ + DE+ P ++D L++PGG +P+YL  ++  +   R F NSGK + +ICHG  
Sbjct: 49  EASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQ 108

Query: 129 ILAAADVVKGRKCTAYPPVKPVLI---AAGASWIEPETMAACVVDGN-IITGATYEGHPE 184
           +L +ADV++GRK TA   VKP++I    AGA + + E     VVD + ++T  T +  P 
Sbjct: 109 LLISADVIRGRKLTA---VKPIIIDVKNAGAEFYDQE----VVVDKDQLVTSRTPDDLPA 161

Query: 185 FIRLFLKALGG 195
           F R  L+ LG 
Sbjct: 162 FNREALRLLGA 172

Escherichia coli (strain K12) (taxid: 83333)

>sp|O06006|YRAA_BACSU Putative cysteine protease YraA OS=Bacillus subtilis (strain 168) GN=yraA PE=2 SV=2

 Score = 77.4 bits (189), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 84/185 (45%), Gaps = 19/185 (10%)

Query: 9   RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR 68
           + + +L  D  ED E   P +A    G SV               A+    G +   +  
Sbjct: 3   KKIAVLVTDQFEDIEYTSPVKAYEEAGYSV--------------VAIDLEAGKEVTGK-H 47

Query: 69  GHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128
           G    ++    ++D + +D L+IPGG +P+ L  +D   +  + F  + K + +ICHG  
Sbjct: 48  GEKVKIDKAISDVDASDFDALLIPGGFSPDLLRADDRPGEFAKAFVENKKPVFAICHGPQ 107

Query: 129 ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRL 188
           +L   D++KG+  T Y  ++  LI AGA++ + E     VV  NI+T  T +    F R 
Sbjct: 108 VLIDTDLLKGKDITGYRSIRKDLINAGANYKDAE----VVVSHNIVTSRTPDDLEAFNRE 163

Query: 189 FLKAL 193
            L  L
Sbjct: 164 SLNLL 168

Functions in the protection against aldehyde-stress, possibly by degrading damaged proteins.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 3

EC: .

EC: 2

EC: .

EC: -

EC: .

EC: -

>sp|Q58377|Y967_METJA Uncharacterized protein MJ0967 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0967 PE=3 SV=1

 Score = 76.6 bits (187), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 20/150 (13%)

Query: 52  PTAVHQSTGHQT--YSETRG-------HNFALNATFDEIDPTKYDGLVIPGGR-APEYLA 101
           P AV +S G +    S T+G       +   +  T  +++P  Y  +VI GG  + EYL 
Sbjct: 51  PMAVFESNGLKVDVVSTTKGECVGMLGNKITVEKTIYDVNPDDYVAIVIVGGIGSKEYLW 110

Query: 102 MNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPV--LIAAGASWI 159
            N  +I+LV++F N  K +++IC   ++LA A ++KG+K T YP  + +  L  AGA + 
Sbjct: 111 NNTKLIELVKEFYNKNKVVSAICLSPVVLARAGILKGKKATVYPAPEAIEELKKAGAIYE 170

Query: 160 EPETMAACVVDGNIITGATYEGHPEFIRLF 189
           +       VVDGN+IT  +    P++ RLF
Sbjct: 171 D----RGVVVDGNVITAKS----PDYARLF 192

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|P80876|GS18_BACSU General stress protein 18 OS=Bacillus subtilis (strain 168) GN=yfkM PE=1 SV=3

 Score = 72.0 bits (175), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 83/187 (44%), Gaps = 18/187 (9%)

Query: 7   GKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSE 66
           GK+  ++L   Y ED E   P +A    G  +              T + +  G     +
Sbjct: 2   GKKIAVVLTY-YFEDSEYTEPAKAFKEAGHEL--------------TVIEKEKGKTVKGK 46

Query: 67  TRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 126
                  ++A+ D+++ + +D L+IPGG +P+ L  +D  +   + F    K + +ICHG
Sbjct: 47  QGTAEVTVDASIDDVNSSDFDALLIPGGFSPDQLRADDRFVQFTKAFMTDKKPVFAICHG 106

Query: 127 QLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFI 186
             +L  A  + GRK T Y  ++  +  AGA  ++ E +   V    ++T  T +  P F 
Sbjct: 107 PQLLINAKALDGRKATGYTSIRVDMENAGADVVDKEVV---VCQDQLVTSRTPDDIPAFN 163

Query: 187 RLFLKAL 193
           R  L  L
Sbjct: 164 RESLALL 170

Functions in the protection against aldehyde-stress, possibly by degrading damaged proteins.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 3

EC: .

EC: 2

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
255570457	388	protease C56, putative [Ricinus communis	0.958	0.541	0.774	2e-97
224134735	386	predicted protein [Populus trichocarpa]	0.954	0.541	0.773	5e-95
118483416	386	unknown [Populus trichocarpa]	0.954	0.541	0.773	5e-95
359476496	529	PREDICTED: uncharacterized protein LOC10	0.917	0.379	0.810	5e-94
297738171	386	unnamed protein product [Vitis vinifera]	0.917	0.520	0.810	7e-94
449469102	390	PREDICTED: uncharacterized protein LOC10	0.945	0.530	0.784	8e-94
255570459	386	protease C56, putative [Ricinus communis	0.954	0.541	0.745	8e-90
357166678	388	PREDICTED: uncharacterized protein LOC10	0.917	0.518	0.761	1e-89
115461240	387	Os04g0671700 [Oryza sativa Japonica Grou	0.917	0.519	0.751	6e-88
226498180	387	YLS5 [Zea mays] gi|194688460|gb|ACF78314	0.917	0.519	0.751	1e-87

>gi|255570457|ref|XP_002526187.1| protease C56, putative [Ricinus communis] gi|223534491|gb|EEF36191.1| protease C56, putative [Ricinus communis]

 Score =  360 bits (925), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 168/217 (77%), Positives = 197/217 (90%), Gaps = 7/217 (3%)

Query: 8   KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSET 67
           +++V LLCGDYMEDYEAMVPFQALLA+GV+VDAACPGKK+GD C TA+H+S+GHQTYSE+
Sbjct: 4   QKTVFLLCGDYMEDYEAMVPFQALLAYGVAVDAACPGKKAGDYCRTAIHESSGHQTYSES 63

Query: 68  RGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127
           RGHNF LN+TFD+ID  KYDGLVIPGGRAPEYLAMN+SV+D VRKF+++GK IAS+CHGQ
Sbjct: 64  RGHNFTLNSTFDDIDFGKYDGLVIPGGRAPEYLAMNESVLDCVRKFADAGKPIASVCHGQ 123

Query: 128 LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIR 187
           LILAAA +VKGRKCTAYPPV+PVLIAAGA W+EPETMA+CV DGN+ITGATYEGHPEFI+
Sbjct: 124 LILAAAGLVKGRKCTAYPPVRPVLIAAGAHWVEPETMASCVADGNLITGATYEGHPEFIQ 183

Query: 188 LFLKALGGTITGSDKRILFLCG-------VSFCFQNL 217
           LF+KALGG+ITG+DKRILFLCG       V+  FQ+L
Sbjct: 184 LFVKALGGSITGADKRILFLCGDYMEDYEVTVPFQSL 220

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134735|ref|XP_002327476.1| predicted protein [Populus trichocarpa] gi|222836030|gb|EEE74451.1| predicted protein [Populus trichocarpa]

 Score =  352 bits (904), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 167/216 (77%), Positives = 191/216 (88%), Gaps = 7/216 (3%)

Query: 9   RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR 68
           +SVLLLCGDYMED+EAMVPFQAL AFG++VDAACPGKK+GD+C TA+H S G+QTY+E+R
Sbjct: 3   KSVLLLCGDYMEDHEAMVPFQALQAFGIAVDAACPGKKAGDICRTAIHDSAGYQTYTESR 62

Query: 69  GHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128
           GHNF LNATFDE+D  KYDGLVIPGGRAPEYLAMN+SV+D VRKFS+SG+ IAS+CHGQL
Sbjct: 63  GHNFTLNATFDEVDFGKYDGLVIPGGRAPEYLAMNESVLDCVRKFSDSGRPIASVCHGQL 122

Query: 129 ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRL 188
           ILAAA+ VKGRKCTAYP VKPVLI AGA W+EPETM ACV DGNIITGATYEGHPEFI+L
Sbjct: 123 ILAAANSVKGRKCTAYPAVKPVLIDAGAHWVEPETMKACVADGNIITGATYEGHPEFIQL 182

Query: 189 FLKALGGTITGSDKRILFLCG-------VSFCFQNL 217
           F++ALGG ITGSDK+ILFLCG       V+  FQ+L
Sbjct: 183 FVRALGGKITGSDKKILFLCGDFMEDYEVTVPFQSL 218

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483416|gb|ABK93608.1| unknown [Populus trichocarpa]

 Score =  352 bits (903), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 167/216 (77%), Positives = 191/216 (88%), Gaps = 7/216 (3%)

Query: 9   RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR 68
           +SVLLLCGDYMED+EAMVPFQAL AFG++VDAACPGKK+GD+C TA+H S G+QTY+E+R
Sbjct: 3   KSVLLLCGDYMEDHEAMVPFQALQAFGIAVDAACPGKKAGDICRTAIHDSAGYQTYTESR 62

Query: 69  GHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128
           GHNF LNATFDE+D  KYDGLVIPGGRAPEYLAMN+SV+D VRKFS+SG+ IAS+CHGQL
Sbjct: 63  GHNFTLNATFDEVDFGKYDGLVIPGGRAPEYLAMNESVLDCVRKFSDSGRPIASVCHGQL 122

Query: 129 ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRL 188
           ILAAA+ VKGRKCTAYP VKPVLI AGA W+EPETM ACV DGNIITGATYEGHPEFI+L
Sbjct: 123 ILAAANSVKGRKCTAYPAVKPVLIDAGAHWVEPETMKACVADGNIITGATYEGHPEFIQL 182

Query: 189 FLKALGGTITGSDKRILFLCG-------VSFCFQNL 217
           F++ALGG ITGSDK+ILFLCG       V+  FQ+L
Sbjct: 183 FVRALGGKITGSDKKILFLCGDFMEDYEVTVPFQSL 218

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476496|ref|XP_002272841.2| PREDICTED: uncharacterized protein LOC100247956 [Vitis vinifera]

 Score =  349 bits (895), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 163/201 (81%), Positives = 182/201 (90%)

Query: 9   RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR 68
           +SVL+LCGDYMEDYE MVPFQALLA+GVSV A CPGKK+GDVC TAVHQ  GHQTYSE+R
Sbjct: 146 KSVLILCGDYMEDYEVMVPFQALLAYGVSVHAVCPGKKAGDVCRTAVHQGLGHQTYSESR 205

Query: 69  GHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128
           GHNF +NATFDE+D +KYDGLVIPGGRAPEYLAMN+SV+DLVRKF +SGK IASICHGQL
Sbjct: 206 GHNFTVNATFDEVDASKYDGLVIPGGRAPEYLAMNESVLDLVRKFFSSGKPIASICHGQL 265

Query: 129 ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRL 188
           ILAA+  V+GRKCTAYP V P LIAAGA W+EPETM+ACV+DGN+IT ATY GHP FI+L
Sbjct: 266 ILAASGSVRGRKCTAYPAVGPALIAAGAHWVEPETMSACVIDGNLITAATYIGHPGFIQL 325

Query: 189 FLKALGGTITGSDKRILFLCG 209
           F+KALGGTITGSDKRILFLCG
Sbjct: 326 FVKALGGTITGSDKRILFLCG 346

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738171|emb|CBI27372.3| unnamed protein product [Vitis vinifera]

 Score =  348 bits (894), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 163/201 (81%), Positives = 182/201 (90%)

Query: 9   RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR 68
           +SVL+LCGDYMEDYE MVPFQALLA+GVSV A CPGKK+GDVC TAVHQ  GHQTYSE+R
Sbjct: 3   KSVLILCGDYMEDYEVMVPFQALLAYGVSVHAVCPGKKAGDVCRTAVHQGLGHQTYSESR 62

Query: 69  GHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128
           GHNF +NATFDE+D +KYDGLVIPGGRAPEYLAMN+SV+DLVRKF +SGK IASICHGQL
Sbjct: 63  GHNFTVNATFDEVDASKYDGLVIPGGRAPEYLAMNESVLDLVRKFFSSGKPIASICHGQL 122

Query: 129 ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRL 188
           ILAA+  V+GRKCTAYP V P LIAAGA W+EPETM+ACV+DGN+IT ATY GHP FI+L
Sbjct: 123 ILAASGSVRGRKCTAYPAVGPALIAAGAHWVEPETMSACVIDGNLITAATYIGHPGFIQL 182

Query: 189 FLKALGGTITGSDKRILFLCG 209
           F+KALGGTITGSDKRILFLCG
Sbjct: 183 FVKALGGTITGSDKRILFLCG 203

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469102|ref|XP_004152260.1| PREDICTED: uncharacterized protein LOC101208672 [Cucumis sativus] gi|449484302|ref|XP_004156844.1| PREDICTED: uncharacterized LOC101208672 [Cucumis sativus]

 Score =  348 bits (893), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 164/209 (78%), Positives = 187/209 (89%), Gaps = 2/209 (0%)

Query: 1   MANSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTG 60
           MA SK   +SVLLLCGD+MEDYEAMVPFQAL+A+GVSVDA CPGKK+GD+C TA+H+  G
Sbjct: 1   MAQSK--SKSVLLLCGDFMEDYEAMVPFQALMAYGVSVDAVCPGKKAGDICRTAIHELLG 58

Query: 61  HQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTI 120
           HQTYSE+RGHNFALNATFDEID  KYDGLVIPGGRAPEYLA+N SV  LVRKFS SGK I
Sbjct: 59  HQTYSESRGHNFALNATFDEIDFDKYDGLVIPGGRAPEYLAINSSVQSLVRKFSESGKPI 118

Query: 121 ASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYE 180
           AS+CHGQLILAAA +V+GRKCTAY PV PVL AAGASWIEPE++AACV+DGN+IT ATYE
Sbjct: 119 ASVCHGQLILAAAGLVRGRKCTAYSPVGPVLAAAGASWIEPESLAACVIDGNLITAATYE 178

Query: 181 GHPEFIRLFLKALGGTITGSDKRILFLCG 209
            HP++I+LF+KALGG ++GSDKRILFLCG
Sbjct: 179 SHPQYIQLFVKALGGNVSGSDKRILFLCG 207

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570459|ref|XP_002526188.1| protease C56, putative [Ricinus communis] gi|223534492|gb|EEF36192.1| protease C56, putative [Ricinus communis]

 Score =  335 bits (859), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 161/216 (74%), Positives = 185/216 (85%), Gaps = 7/216 (3%)

Query: 9   RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR 68
           +SVLLLCGDYMED+EAMVPFQALLAFGV VDA CPGKK+G+ C TA+H+ + HQT+ E+R
Sbjct: 3   KSVLLLCGDYMEDHEAMVPFQALLAFGVKVDAVCPGKKAGEFCRTAIHELSTHQTFDESR 62

Query: 69  GHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128
           GHNF LNATFDEID  KYDGLVIPGGRAPEYLAMN+SV+D VRKFS++GK IASICHGQL
Sbjct: 63  GHNFTLNATFDEIDFGKYDGLVIPGGRAPEYLAMNESVLDCVRKFSDAGKPIASICHGQL 122

Query: 129 ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRL 188
           ILAAA +VKGR+CTA P  +PVLIAAGA W+EP+  AACV DGN+ITGATY GHPEFI+L
Sbjct: 123 ILAAAGLVKGRRCTAAPHGRPVLIAAGADWVEPQNFAACVADGNLITGATYFGHPEFIQL 182

Query: 189 FLKALGGTITGSDKRILFLCG-------VSFCFQNL 217
           F+KALGG +TGSDKRILFLCG       V+  FQ+L
Sbjct: 183 FVKALGGIVTGSDKRILFLCGDYMEDYEVTVPFQSL 218

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357166678|ref|XP_003580796.1| PREDICTED: uncharacterized protein LOC100841497 [Brachypodium distachyon]

 Score =  334 bits (857), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 153/201 (76%), Positives = 180/201 (89%)

Query: 9   RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR 68
           + VLLLCGDYMEDYEAMVPFQAL A+GV+VDAACPGKK+GD C TAVHQ  GHQTY+E+R
Sbjct: 4   KRVLLLCGDYMEDYEAMVPFQALQAYGVAVDAACPGKKAGDSCRTAVHQPIGHQTYAESR 63

Query: 69  GHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128
           GHNF+LNA+FDEI+  +YDGLVIPGGRAPEYLAM++ V+DLVRKFS++ K IAS+CHGQL
Sbjct: 64  GHNFSLNASFDEINVAEYDGLVIPGGRAPEYLAMDEKVLDLVRKFSDAKKPIASVCHGQL 123

Query: 129 ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRL 188
           ILAAA VV+GR CTAYP VKPVLIAAGA+W+E +TMA C VDGN++T A Y+GHPEFI L
Sbjct: 124 ILAAAGVVQGRSCTAYPAVKPVLIAAGANWVEADTMAKCAVDGNLVTAAAYDGHPEFISL 183

Query: 189 FLKALGGTITGSDKRILFLCG 209
           F+KALGG++ GS+KRILFLCG
Sbjct: 184 FVKALGGSVAGSNKRILFLCG 204

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115461240|ref|NP_001054220.1| Os04g0671700 [Oryza sativa Japonica Group] gi|70663940|emb|CAE03602.2| OSJNBb0004A17.4 [Oryza sativa Japonica Group] gi|90265250|emb|CAH67703.1| H0624F09.11 [Oryza sativa Indica Group] gi|113565791|dbj|BAF16134.1| Os04g0671700 [Oryza sativa Japonica Group] gi|125592020|gb|EAZ32370.1| hypothetical protein OsJ_16581 [Oryza sativa Japonica Group] gi|215704721|dbj|BAG94749.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  328 bits (842), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 151/201 (75%), Positives = 176/201 (87%)

Query: 9   RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR 68
           + VLLLCGDYMEDYEAMVPFQAL A+GVSVDAACPGKK+GD C TAVHQ  GHQTY+E+R
Sbjct: 4   KKVLLLCGDYMEDYEAMVPFQALQAYGVSVDAACPGKKAGDSCRTAVHQGIGHQTYAESR 63

Query: 69  GHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128
           GHNFALNA+FDE++  +YDGLVIPGGRAPEYLAM++ V+DLVRKFS++ K IAS+CHGQL
Sbjct: 64  GHNFALNASFDEVNINEYDGLVIPGGRAPEYLAMDEKVLDLVRKFSDAKKPIASVCHGQL 123

Query: 129 ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRL 188
           ILAAA VV+ RKCTAYP VKPVL+AAGA W E +TM  C VDGN++T   Y+ HPEFI L
Sbjct: 124 ILAAAGVVQNRKCTAYPAVKPVLVAAGAKWEEADTMDKCTVDGNLVTAVAYDAHPEFISL 183

Query: 189 FLKALGGTITGSDKRILFLCG 209
           F+KALGG++TGS+KRILFLCG
Sbjct: 184 FVKALGGSVTGSNKRILFLCG 204

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226498180|ref|NP_001146927.1| YLS5 [Zea mays] gi|194688460|gb|ACF78314.1| unknown [Zea mays] gi|195605312|gb|ACG24486.1| YLS5 [Zea mays] gi|414584851|tpg|DAA35422.1| TPA: YLS5 [Zea mays]

 Score =  328 bits (840), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 151/201 (75%), Positives = 173/201 (86%)

Query: 9   RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR 68
           + VL+LCGDYMEDYE MVPFQAL A+GVSVDA CP KK+GD+C TAVHQ TGHQTYSET+
Sbjct: 4   KKVLMLCGDYMEDYEVMVPFQALQAYGVSVDAVCPSKKAGDICRTAVHQLTGHQTYSETK 63

Query: 69  GHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128
           GHNF LNA+FDEI  ++YDGLVIPGGRAPEYLAM++ V+DLVR FS + K IAS+CHGQL
Sbjct: 64  GHNFTLNASFDEITASEYDGLVIPGGRAPEYLAMDEKVLDLVRMFSGAKKPIASVCHGQL 123

Query: 129 ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRL 188
           ILAAA VV+ R CTA+P VKPVL+AAGA W EP+TMA C VDGN+IT ATY  HPEFI L
Sbjct: 124 ILAAARVVENRTCTAFPAVKPVLVAAGAKWEEPDTMAKCTVDGNLITAATYNSHPEFISL 183

Query: 189 FLKALGGTITGSDKRILFLCG 209
           F+KALGG++ GSDKRILFLCG
Sbjct: 184 FVKALGGSVAGSDKRILFLCG 204

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
TAIR|locus:2075532	388	DJ1D [Arabidopsis thaliana (ta	0.936	0.528	0.741	1.3e-82
DICTYBASE|DDB_G0276405	194	pfp1 "DJ-1/ThiJ/PfpI family pr	0.863	0.974	0.450	4e-42
UNIPROTKB|Q8EH52	186	SO_1378 "Peptidase family 56"	0.835	0.983	0.472	5.2e-42
TIGR_CMR|SO_1378	186	SO_1378 "ThiJ/PfpI family prot	0.835	0.983	0.472	5.2e-42
TAIR|locus:2064955	398	YLS5 [Arabidopsis thaliana (ta	0.922	0.507	0.391	6.3e-37
UNIPROTKB|P45470	172	yhbO "protein involved in stre	0.643	0.819	0.354	1.1e-18
TIGR_CMR|GSU_1159	167	GSU_1159 "intracellular protea	0.748	0.982	0.320	4.1e-17
UNIPROTKB|Q81UM2	171	BAS0802 "ThiJ/pfpI family prot	0.767	0.982	0.270	5.6e-13
TIGR_CMR|BA_0842	171	BA_0842 "thiJ/pfpI family prot	0.767	0.982	0.270	5.6e-13
UNIPROTKB|Q3ZA81	180	DET0118 "DJ-1 family protein"	0.511	0.622	0.305	4.1e-10

TAIR|locus:2075532 DJ1D [Arabidopsis thaliana (taxid:3702)]

 Score = 828 (296.5 bits), Expect = 1.3e-82, P = 1.3e-82
 Identities = 155/209 (74%), Positives = 176/209 (84%)

Query:     1 MANSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTG 60
             MANS    R+VL+LCGDYMEDYE MVPFQAL AFG++V   CPGKK+GD CPTAVH   G
Sbjct:     1 MANS----RTVLILCGDYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCG 56

Query:    61 HQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTI 120
             HQTY E+RGHNF LNATFDE+D +KYDGLVIPGGRAPEYLA+  SV++LV++FS SGK I
Sbjct:    57 HQTYFESRGHNFTLNATFDEVDLSKYDGLVIPGGRAPEYLALTASVVELVKEFSRSGKPI 116

Query:   121 ASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYE 180
             ASICHGQLILAAAD V GRKCTAY  V P L+AAGA W+EP T   CVVDG++IT ATYE
Sbjct:   117 ASICHGQLILAAADTVNGRKCTAYATVGPSLVAAGAKWVEPITPDVCVVDGSLITAATYE 176

Query:   181 GHPEFIRLFLKALGGTITGSDKRILFLCG 209
             GHPEFI+LF+KALGG ITG++KRILFLCG
Sbjct:   177 GHPEFIQLFVKALGGKITGANKRILFLCG 205

GO:0005737 "cytoplasm" evidence=ISM

GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=IEA

DICTYBASE|DDB_G0276405 pfp1 "DJ-1/ThiJ/PfpI family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 86/191 (45%), Positives = 123/191 (64%)

Query:     9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQST-GHQTYSET 67
             R++L++ GDY EDYE     Q L   G +V    PGKKSGD   TA+H    G QTY+E 
Sbjct:     3 RNILIITGDYTEDYETYAVKQMLELVGYNVHLVSPGKKSGDFIVTAIHDFLPGEQTYTEL 62

Query:    68 RGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127
             +GH   LN  FD++D   Y+GL +PGGR  E+L ++D VI++V+ F+ + K IA++CHG 
Sbjct:    63 KGHRIQLNFDFDKVDTATYNGLFLPGGRCSEFLRLDDRVIEIVKDFNTNKKPIAAVCHGA 122

Query:   128 LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIR 187
              +L AA++V G KCTAYP  +P +  AG  + +   +   VVDG+I++G  +  HP+ I+
Sbjct:   123 QVLTAANIVSGIKCTAYPACRPEVQQAGGIY-QDIAVDDAVVDGHIVSGKAWPCHPKLIQ 181

Query:   188 LFLKALGGTIT 198
             LF+K LG TIT
Sbjct:   182 LFIKLLGTTIT 192

GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q8EH52 SO_1378 "Peptidase family 56" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 87/184 (47%), Positives = 117/184 (63%)

Query:    10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRG 69
             ++L++ GD++EDYE MVPFQAL   G SV   CP K +G    TA+H   G QTY+E  G
Sbjct:     3 NILIIAGDFVEDYELMVPFQALQMVGHSVTVVCPDKVAGQTIKTAIHDFEGDQTYTEKPG 62

Query:    70 HNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI 129
             H FALN  F   + + +D L++PGGRAPEYL +N +VI LV  FS   K IA+ICHG  +
Sbjct:    63 HLFALNGNFAGANASDFDALLLPGGRAPEYLRLNPAVIALVADFSAQDKPIAAICHGAQL 122

Query:   130 LAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLF 189
             L AADVV+G+K +AYP   P +  AGA + + E  AA + DG ++T   +  HP ++  F
Sbjct:   123 LTAADVVRGKKVSAYPACAPEVKQAGAEYCDIEVTAA-ITDGKLVTAPAWPAHPAWLAQF 181

Query:   190 LKAL 193
              K L
Sbjct:   182 NKLL 185

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_1378 SO_1378 "ThiJ/PfpI family protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 87/184 (47%), Positives = 117/184 (63%)

Query:    10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRG 69
             ++L++ GD++EDYE MVPFQAL   G SV   CP K +G    TA+H   G QTY+E  G
Sbjct:     3 NILIIAGDFVEDYELMVPFQALQMVGHSVTVVCPDKVAGQTIKTAIHDFEGDQTYTEKPG 62

Query:    70 HNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI 129
             H FALN  F   + + +D L++PGGRAPEYL +N +VI LV  FS   K IA+ICHG  +
Sbjct:    63 HLFALNGNFAGANASDFDALLLPGGRAPEYLRLNPAVIALVADFSAQDKPIAAICHGAQL 122

Query:   130 LAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLF 189
             L AADVV+G+K +AYP   P +  AGA + + E  AA + DG ++T   +  HP ++  F
Sbjct:   123 LTAADVVRGKKVSAYPACAPEVKQAGAEYCDIEVTAA-ITDGKLVTAPAWPAHPAWLAQF 181

Query:   190 LKAL 193
              K L
Sbjct:   182 NKLL 185

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

TAIR|locus:2064955 YLS5 [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 83/212 (39%), Positives = 126/212 (59%)

Query:     8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSET 67
             ++S LLLCGDYME YE +VP   L +FGVSV    P + +GD C  + H   G + Y+E 
Sbjct:     6 QKSALLLCGDYMEAYETIVPLYVLQSFGVSVHCVSPNRNAGDRCVMSAHDFLGLELYTEL 65

Query:    68 RGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127
                   LNA FD++ P  YD ++IPGGR  E L+ ++  +DLV +F+ S K I + CH Q
Sbjct:    66 VVDQLTLNANFDDVTPENYDVIIIPGGRFTELLSADEKCVDLVARFAESKKLIFTSCHSQ 125

Query:   128 LILAAADVVKGR-KCTAYPPVKPVL-IAAGASWIEP--ETM---AACVVDGNIITGATYE 180
             ++L AA ++ G  KCTA+  +KP++ ++ G  W +P  ++M     CV DGN ++   + 
Sbjct:   126 VMLMAAGILAGGVKCTAFESIKPLIELSGGEWWQQPGIQSMFEITDCVKDGNFMSTVGWP 185

Query:   181 GHPEFIRLFLKALGGTITGSDKR---ILFLCG 209
                  I+L L++LGG +   +K+   +LFL G
Sbjct:   186 TLGHGIKLLLESLGGKVCSLEKKQASVLFLIG 217

GO:0005737 "cytoplasm" evidence=ISM

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

UNIPROTKB|P45470 yhbO "protein involved in stress response" [Escherichia coli K-12 (taxid:83333)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 55/155 (35%), Positives = 90/155 (58%)

Query:    45 KKSGDVCPTAVHQSTGHQTYSETRGH-NFALNATFDEIDPTKYDGLVIPGGRAPEYLAMN 103
             +K+G    T + +  G +T    +G  +  ++ + DE+ P ++D L++PGG +P+YL  +
Sbjct:    26 RKAGHEVIT-IEKQAG-KTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGD 83

Query:   104 DSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA---AGASWIE 160
             +  +   R F NSGK + +ICHG  +L +ADV++GRK TA   VKP++I    AGA + +
Sbjct:    84 NRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTA---VKPIIIDVKNAGAEFYD 140

Query:   161 PETMAACVVDGN-IITGATYEGHPEFIRLFLKALG 194
              E     VVD + ++T  T +  P F R  L+ LG
Sbjct:   141 QEV----VVDKDQLVTSRTPDDLPAFNREALRLLG 171

GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0009408 "response to heat" evidence=IMP

GO:0009268 "response to pH" evidence=IMP

GO:0009411 "response to UV" evidence=IMP

TIGR_CMR|GSU_1159 GSU_1159 "intracellular protease, PfpI family" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 59/184 (32%), Positives = 90/184 (48%)

Query:    12 LLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHN 71
             L++  D  ED E ++P+  LL  G+ V  A P +  G +        TG   Y+ T   +
Sbjct:     4 LIISADQFEDSELLIPYYRLLEEGIPVRIAAPAR--GTI--------TGKHGYAVTA--D 51

Query:    72 FALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 131
              AL     E+    Y  L++PGG+AP  +    + +++ R F    + +A+ICHG   L 
Sbjct:    52 LALA----EVAADDYTILILPGGKAPAAVRREPAALEICRSFFAHVRPVAAICHGPQTLV 107

Query:   132 AADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLK 191
             +A ++ GR+ T Y  V   L  AGA + + E     VVDGN+IT       P F+R  +K
Sbjct:   108 SAGLLSGRRATCYRSVADELRGAGALYEDSEV----VVDGNLITSREPADLPAFMREIMK 163

Query:   192 ALGG 195
              L G
Sbjct:   164 KLKG 167

GO:0006508 "proteolysis" evidence=ISS

GO:0008233 "peptidase activity" evidence=ISS

UNIPROTKB|Q81UM2 BAS0802 "ThiJ/pfpI family protein" [Bacillus anthracis (taxid:1392)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 50/185 (27%), Positives = 83/185 (44%)

Query:     9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR 68
             + + +L  DY ED E   P +A    G  +      +K        VH   G Q  SE  
Sbjct:     3 KKIAILITDYFEDTEYTEPAEAFKQKGYEL-TTIEAEKG-----KTVH---GKQGKSEV- 52

Query:    69 GHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128
                  ++   D++ P  +D L IPGG +P+ L  ++  +   + F ++ K + +ICHG  
Sbjct:    53 ----VIDTGIDDVSPENFDALFIPGGFSPDILRADERFVRFSKAFMDAEKPVFAICHGPQ 108

Query:   129 ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRL 188
             +L  A  ++GR  T Y  ++  L  AG ++ + E +   V    ++T    E  P FI  
Sbjct:   109 LLITAQTLEGRDVTGYKSIEVDLKNAGGNFHDKEVV---VCQNQLVTSRQPEDIPAFIEE 165

Query:   189 FLKAL 193
              L+ L
Sbjct:   166 SLRIL 170

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_0842 BA_0842 "thiJ/pfpI family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 50/185 (27%), Positives = 83/185 (44%)

Query:     9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR 68
             + + +L  DY ED E   P +A    G  +      +K        VH   G Q  SE  
Sbjct:     3 KKIAILITDYFEDTEYTEPAEAFKQKGYEL-TTIEAEKG-----KTVH---GKQGKSEV- 52

Query:    69 GHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128
                  ++   D++ P  +D L IPGG +P+ L  ++  +   + F ++ K + +ICHG  
Sbjct:    53 ----VIDTGIDDVSPENFDALFIPGGFSPDILRADERFVRFSKAFMDAEKPVFAICHGPQ 108

Query:   129 ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRL 188
             +L  A  ++GR  T Y  ++  L  AG ++ + E +   V    ++T    E  P FI  
Sbjct:   109 LLITAQTLEGRDVTGYKSIEVDLKNAGGNFHDKEVV---VCQNQLVTSRQPEDIPAFIEE 165

Query:   189 FLKAL 193
              L+ L
Sbjct:   166 SLRIL 170

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3ZA81 DET0118 "DJ-1 family protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 37/121 (30%), Positives = 64/121 (52%)

Query:    67 TRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAM--NDSVIDLVRKFSNSGKTIASIC 124
             +RG     +   DE+  + Y+ LV+PGG  P ++ M  +  V++L+R     GK +A+IC
Sbjct:    44 SRGIRIMPDLGIDELKSSDYEVLVLPGGN-PGFINMGKDQRVLELIRSAHAEGKYLAAIC 102

Query:   125 HGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPE 184
              G  +L+ A V+ G++   YP VK +L    A  +  +      V+G +ITG + +   +
Sbjct:   103 AGPAVLSRAGVINGKEVAIYPGVKHLLKGCTACDLRVK------VEGKLITGRSPQAAMD 156

Query:   185 F 185
             F
Sbjct:   157 F 157

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M8R4	DJ1D_ARATH	No assigned EC number	0.7416	0.9360	0.5283	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	219
cd03169	180	cd03169, GATase1_PfpI_1, Type 1 glutamine amidotra	5e-97
TIGR01382	166	TIGR01382, PfpI, intracellular protease, PfpI fami	3e-53
cd03134	165	cd03134, GATase1_PfpI_like, A type 1 glutamine ami	3e-44
COG0693	188	COG0693, ThiJ, Putative intracellular protease/ami	4e-38
pfam01965	142	pfam01965, DJ-1_PfpI, DJ-1/PfpI family	9e-35
cd03135	163	cd03135, GATase1_DJ-1, Type 1 glutamine amidotrans	2e-21
cd03141	221	cd03141, GATase1_Hsp31_like, Type 1 glutamine amid	7e-17
cd03139	183	cd03139, GATase1_PfpI_2, Type 1 glutamine amidotra	1e-15
TIGR01383	179	TIGR01383, not_thiJ, DJ-1 family protein	3e-14
cd03140	170	cd03140, GATase1_PfpI_3, Type 1 glutamine amidotra	8e-11
pfam13278	164	pfam13278, DUF4066, Putative amidotransferase	1e-09
cd01653	115	cd01653, GATase1, Type 1 glutamine amidotransferas	2e-08
cd03128	92	cd03128, GAT_1, Type 1 glutamine amidotransferase	7e-08
cd03138	195	cd03138, GATase1_AraC_2, AraC transcriptional regu	2e-06
cd03137	187	cd03137, GATase1_AraC_1, AraC transcriptional regu	3e-06
cd03136	185	cd03136, GATase1_AraC_ArgR_like, AraC transcriptio	1e-05
COG4977	328	COG4977, COG4977, Transcriptional regulator contai	1e-05
cd03147	231	cd03147, GATase1_Ydr533c_like, Type 1 glutamine am	1e-05
cd01744	178	cd01744, GATase1_CPSase, Small chain of the glutam	5e-05
pfam00117	186	pfam00117, GATase, Glutamine amidotransferase clas	0.001
TIGR01737	227	TIGR01737, FGAM_synth_I, phosphoribosylformylglyci	0.003
TIGR01230	275	TIGR01230, agmatinase, agmatinase	0.004

>gnl|CDD|153243 cd03169, GATase1_PfpI_1, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

 Score =  279 bits (716), Expect = 5e-97
 Identities = 98/184 (53%), Positives = 125/184 (67%), Gaps = 4/184 (2%)

Query: 10  SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRG 69
            +L+L GD++EDYE MVPFQAL   G  VD   PGKK GD   TA+H   G QTY+E  G
Sbjct: 1   KILILTGDFVEDYEVMVPFQALQEVGHEVDVVAPGKKKGDTVVTAIHDFPGWQTYTEKPG 60

Query: 70  HNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI 129
           H FA+ A FDE+DP  YD LVIPGGRAPEYL +++ V+ +VR F+ + K +A+ICHG  I
Sbjct: 61  HRFAVTADFDEVDPDDYDALVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQI 120

Query: 130 LAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLF 189
           LAAA V+KGR+CTAYP  KP +  AG + ++       VVDGN++T   +  HP F+R F
Sbjct: 121 LAAAGVLKGRRCTAYPACKPEVELAGGTVVDD----GVVVDGNLVTAQAWPDHPAFLREF 176

Query: 190 LKAL 193
           LK L
Sbjct: 177 LKLL 180

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 180

>gnl|CDD|233389 TIGR01382, PfpI, intracellular protease, PfpI family

 Score =  167 bits (426), Expect = 3e-53
 Identities = 70/184 (38%), Positives = 100/184 (54%), Gaps = 19/184 (10%)

Query: 11  VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGH 70
           +L+L  D  ED E + P   L   G  VD                       T     G+
Sbjct: 2   LLVLTTDEFEDSELLYPLDRLREAGHEVDTVSKEA----------------GTTVGKHGY 45

Query: 71  NFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL 130
           +  ++AT DE++P +YD LVIPGGRAPEYL +N+  + LVR+F   GK +A+ICHG  +L
Sbjct: 46  SVTVDATIDEVNPEEYDALVIPGGRAPEYLRLNNKAVRLVREFVEKGKPVAAICHGPQLL 105

Query: 131 AAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFL 190
            +A V++G+K T+YP +   +  AGA +++ E     VVDGN++T    +  P F R FL
Sbjct: 106 ISAGVLRGKKLTSYPAIIDDVKNAGAEYVDIE---VVVVDGNLVTSRVPDDLPAFNREFL 162

Query: 191 KALG 194
           K LG
Sbjct: 163 KLLG 166

The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 166

>gnl|CDD|153228 cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus

 Score =  145 bits (368), Expect = 3e-44
 Identities = 65/183 (35%), Positives = 89/183 (48%), Gaps = 20/183 (10%)

Query: 11  VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGH 70
           V +L  D  ED E   P   L   G  V  A P                         G+
Sbjct: 2   VAILAADGFEDVELTYPLYRLREAGAEVVVAGPEAG---------------GEIQGKHGY 46

Query: 71  N-FALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI 129
           +   ++ T  ++D   YD LVIPGG  P+ L  +   +  VR F+ +GK +A+ICHG  +
Sbjct: 47  DTVTVDLTIADVDADDYDALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKPVAAICHGPWV 106

Query: 130 LAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLF 189
           L +A VV+GRK T+YP +K  LI AGA+W++       VVDGN+IT    +  P F R  
Sbjct: 107 LISAGVVRGRKLTSYPSIKDDLINAGANWVD----EEVVVDGNLITSRNPDDLPAFNRAI 162

Query: 190 LKA 192
           LKA
Sbjct: 163 LKA 165

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704. Length = 165

>gnl|CDD|223765 COG0693, ThiJ, Putative intracellular protease/amidase [General function prediction only]

 Score =  130 bits (328), Expect = 4e-38
 Identities = 71/197 (36%), Positives = 99/197 (50%), Gaps = 23/197 (11%)

Query: 11  VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGH 70
           + +L  D  ED E +VP+  L   G  VD A P  K               ++ +  RG 
Sbjct: 5   IAILLADGFEDLELIVPYDVLRRAGFEVDVASPEGKG--------------KSVTSKRGG 50

Query: 71  NF-ALNATFDEIDPTKYDGLVIPGG-RAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128
              A +  FD+ D   YD LVIPGG   PEYL  +  ++  VR F  +GK +A+ICHG  
Sbjct: 51  LVVADDKAFDDADAADYDALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPA 110

Query: 129 ILAAAD-VVKGRKCTAYPPVKPVLI----AAGASWIEPETMAA-CVVDGN-IITGATYEG 181
           +LAAA  ++KGRK TA+P ++  +      AGA++++        VVDGN ++TG     
Sbjct: 111 VLAAAGLLLKGRKATAFPDIEEDVKNGDGKAGANYVDAPLWTDEVVVDGNALVTGRNPAS 170

Query: 182 HPEFIRLFLKALGGTIT 198
            P F    LKALGG   
Sbjct: 171 APAFALELLKALGGAEK 187

Length = 188

>gnl|CDD|216814 pfam01965, DJ-1_PfpI, DJ-1/PfpI family

 Score =  120 bits (302), Expect = 9e-35
 Identities = 52/132 (39%), Positives = 78/132 (59%), Gaps = 6/132 (4%)

Query: 65  SETRGHNFALNATFDEIDPTKYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASI 123
            +        + T D+++   YD LVIPGG A  E L  ++ ++  V++F  SGK IA+I
Sbjct: 15  GKNGKVKVRADKTLDDVNADDYDALVIPGGHAGAEDLRDDEKLVKFVKEFYESGKPIAAI 74

Query: 124 CHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGN-IITGATYEGH 182
           CHG ++LAAA ++KGR+ T++P VK +L  AGA +++       VVDGN ++T A     
Sbjct: 75  CHGPVVLAAAGLLKGRRVTSFPSVKELLKNAGAEYVDQ----PVVVDGNKLVTSAGPGSA 130

Query: 183 PEFIRLFLKALG 194
            EF    L+ALG
Sbjct: 131 EEFALELLEALG 142

The family includes the protease PfpI. This domain is also found in transcriptional regulators. This N-terminal region of the full-length AdpA proteins is necessary for dimerisation of the molecule. Length = 142

>gnl|CDD|153229 cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1

 Score = 86.1 bits (214), Expect = 2e-21
 Identities = 54/167 (32%), Positives = 78/167 (46%), Gaps = 22/167 (13%)

Query: 11  VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGH 70
           VL++  D  E+ EA+ P   L   G+ V  A   KK           + G        G 
Sbjct: 1   VLVILADGFEEIEAVTPVDVLRRAGIEVTTASLEKK----------LAVGSS-----HGI 45

Query: 71  NFALNATFDEIDPTKYDGLVIPGGR-APEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI 129
               + T  +++   YD +VIPGG    + LA N+ +I L+++F+  GK IA+IC    +
Sbjct: 46  KVKADKTLSDVNLDDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAAPAV 105

Query: 130 LAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 176
           LA A ++KG+K T YP  +  L  A             VVDGNIIT 
Sbjct: 106 LAKAGLLKGKKATCYPGFEDKLGGANYVD------EPVVVDGNIITS 146

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly conserved cysteine located at the nucelophile elbow region typical of these domains. This cysteine been proposed to be a site of regulation of DJ-1 activity by oxidation. DJ-1 is a dimeric enzyme. Length = 163

>gnl|CDD|153235 cd03141, GATase1_Hsp31_like, Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein

 Score = 75.7 bits (187), Expect = 7e-17
 Identities = 49/188 (26%), Positives = 75/188 (39%), Gaps = 41/188 (21%)

Query: 23  EAMVPFQALLAFGVSVDAACP-GKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATF--- 78
           E   P+      G  VD A P G K          +S       +     F  +  F   
Sbjct: 24  ELAHPYDVFTEAGYEVDFASPKGGK-----VPLDPRS--LDAEDDDDASVFDNDEEFKKK 76

Query: 79  -------DEIDPTKYDGLVIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLIL 130
                   ++DP+ YD + IPGG  P + L  N  + DL+R+F  +GK +A++CHG   L
Sbjct: 77  LANTKKLSDVDPSDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAAL 136

Query: 131 AAAD------VVKGRKCTAYP---------------PVKPVLIAAGASWIEPETMAA-CV 168
                     +V G+  T +                 ++  L   GA++++ E  A   V
Sbjct: 137 LNVKLSDGKSLVAGKTVTGFTNEEEEAAGLKKVVPFLLEDELKELGANYVKAEPWAEFVV 196

Query: 169 VDGNIITG 176
           VDG +ITG
Sbjct: 197 VDGRLITG 204

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. For Ydr533c a catalytic triad forms from the conserved Cys together with a different His and Glu from that of the typical GATase1domain. Ydr533c protein and EcHsp31 are homodimers. Length = 221

>gnl|CDD|153233 cd03139, GATase1_PfpI_2, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

 Score = 71.4 bits (176), Expect = 1e-15
 Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 5/111 (4%)

Query: 67  TRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 126
             G     + +F   DP   D L++PGG     L  + +++D +R+ +   K + S+C G
Sbjct: 46  RSGLTVLPDTSFA--DPPDLDVLLVPGGGGTRALVNDPALLDFIRRQAARAKYVTSVCTG 103

Query: 127 QLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 177
            L+LAAA ++ GR+ T +      L   GA        A  VVDGNI T  
Sbjct: 104 ALLLAAAGLLDGRRATTHWAAIDWLKEFGA---IVVVDARWVVDGNIWTSG 151

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 183

>gnl|CDD|213612 TIGR01383, not_thiJ, DJ-1 family protein

 Score = 67.7 bits (166), Expect = 3e-14
 Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 6/103 (5%)

Query: 76  ATFDEIDPTKYDGLVIPGG-RAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD 134
           A+ +++D  K+D +V+PGG    E L  +  ++++++   + GK +A+IC    +L A  
Sbjct: 54  ASLEDVDLEKFDVIVLPGGMPGAENLRNSKLLLNILKSQESKGKLVAAICAAPAVLLAHG 113

Query: 135 VVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 177
           V+ G+K T YP  K  L     ++   +T+   VVDGN+IT  
Sbjct: 114 VLLGKKATCYPGFKEKL--LNGNYSVNKTV---VVDGNLITSR 151

This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PMID:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus [Unknown function, General]. Length = 179

>gnl|CDD|153234 cd03140, GATase1_PfpI_3, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

 Score = 58.0 bits (141), Expect = 8e-11
 Identities = 41/128 (32%), Positives = 57/128 (44%), Gaps = 24/128 (18%)

Query: 78  FDEIDPTKYDGLVIPGGRA---PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD 134
            D++ P  YD L++PGG +   PE       +  LVR+    GK +A+IC   L LA A 
Sbjct: 53  LDDLPPEDYDLLILPGGDSWDNPE----APDLAGLVRQALKQGKPVAAICGATLALARAG 108

Query: 135 VVKGRKCT--------AYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFI 186
           ++  RK T        A+ P           + EP+     V DGN+IT A      EF 
Sbjct: 109 LLNNRKHTSNSLDFLKAHAP----YYGGAEYYDEPQA----VSDGNLIT-ANGTAPVEFA 159

Query: 187 RLFLKALG 194
              L+AL 
Sbjct: 160 AEILRALD 167

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 170

>gnl|CDD|222020 pfam13278, DUF4066, Putative amidotransferase

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 6/111 (5%)

Query: 67  TRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 126
           T  +   +       D  + D +++PGG      A + +++  ++    +G+ + ++C G
Sbjct: 42  TSMNGVTITVDAPLADAPEADAVLVPGGPGTRAAAADPALLAQLQLADPAGQLLGAVCSG 101

Query: 127 QLILAAADVVKGRKCTAYPPVKPVLIAAGA--SWIEPETMAACVVDGNIIT 175
            L+LA A ++ GR  T +  +KP L  AG     I+       V DGN+ T
Sbjct: 102 ALLLAEAGLLDGRPATTHWTLKPWLREAGPKVLLID----RPFVADGNLAT 148

This domain contains similarities to other amidotransferase families such as pfam00117. Some members of the family lack the likely catalytic residues. Length = 164

>gnl|CDD|153210 cd01653, GATase1, Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 50.3 bits (120), Expect = 2e-08
 Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 30/121 (24%)

Query: 11  VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGH 70
           V +L     E+ E   P  AL   G  VD   P     +                     
Sbjct: 1   VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGGPVE--------------------- 39

Query: 71  NFALNATFDEIDPTKYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI 129
                    ++D   YDGL++PGG   P+ LA +++++ L+R+ + +GK I  IC G  +
Sbjct: 40  --------SDVDLDDYDGLILPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQL 91

Query: 130 L 130
           L
Sbjct: 92  L 92

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 115

>gnl|CDD|153222 cd03128, GAT_1, Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 48.4 bits (115), Expect = 7e-08
 Identities = 19/53 (35%), Positives = 35/53 (66%), Gaps = 1/53 (1%)

Query: 79  DEIDPTKYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL 130
            ++D   YDGL++PGG   P+ LA +++++ L+R+ + +GK +  IC G  +L
Sbjct: 40  SDVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQLL 92

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase (CPSase), cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad of typical GATase1 domains, by having a Ser in place of the reactive Cys at the nucleophile elbow. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Peptidase E has a circular permutation in the common core of a typical GTAse1 domain. Length = 92

>gnl|CDD|153232 cd03138, GATase1_AraC_2, AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 26/110 (23%)

Query: 82  DPTKYDGLVIPG-GRAPEYLAMND--SVIDLVRKFSNSGKTIASICHGQLILAAADVVKG 138
           D    D +++PG G  P+ L + D  ++I  +R+   +G T+A+ C G  +LA A ++ G
Sbjct: 66  DVPAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEAGLLDG 125

Query: 139 RKCT-----------AYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 177
           R+ T            +P V+          ++P+ +   V DGN+IT  
Sbjct: 126 RRATTHWWLAPQFRRRFPKVR----------LDPDRVV--VTDGNLITAG 163

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 195

>gnl|CDD|153231 cd03137, GATase1_AraC_1, AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 45.6 bits (109), Expect = 3e-06
 Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 23/103 (22%)

Query: 86  YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCT--- 142
            D +++PGG   +      +++  +R+ +  G  +AS+C G  +LA A ++ GR+ T   
Sbjct: 65  ADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGAFVLAEAGLLDGRRATTHW 124

Query: 143 --------AYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 177
                    +P V+          ++P+     V DGN+ T A
Sbjct: 125 AYAEDLARRFPAVR----------VDPD--VLYVDDGNVWTSA 155

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 187

>gnl|CDD|153230 cd03136, GATase1_AraC_ArgR_like, AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 44.1 bits (105), Expect = 1e-05
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 82  DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKC 141
           D    D L + GG      A+  +++  +R+ +  G  +  I  G  +LA A ++ GR+ 
Sbjct: 61  DAPPLDYLFVVGGLGARR-AVTPALLAWLRRAARRGVALGGIDTGAFLLARAGLLDGRRA 119

Query: 142 TA 143
           T 
Sbjct: 120 TV 121

A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 185

>gnl|CDD|227311 COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 24/117 (20%)

Query: 72  FALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 131
            ++            D L + GG  PE      +++  +R+ +  G  +  +C G  +LA
Sbjct: 63  LSIAPDGGLEAAPPIDILPVCGGLGPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLA 122

Query: 132 AADVVKGRKCT-----------AYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 177
            A ++ GR+ T            +P V+              T    V+DG+ IT A
Sbjct: 123 EAGLLDGRRATTHWEHAEDFQERFPDVR-------------VTDRLFVIDGDRITCA 166

Length = 328

>gnl|CDD|153241 cd03147, GATase1_Ydr533c_like, Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 37/135 (27%)

Query: 76  ATFDEIDPTKYDGLVIPGGRAPEYLAMND-----SVIDLVRKFSNSGKTIASICHGQLIL 130
              DE++P  Y    + GG       + D     ++  + ++   +G  +A++CHG  IL
Sbjct: 85  KKADEVNPDDYGIFFVAGGHG----TLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAIL 140

Query: 131 AAAD-------VVKGRKCTAY-------------------PPVKPVLIAAGASWIEPETM 164
           A          ++KG+  T +                     ++ +   AGA++I P   
Sbjct: 141 ANLKDPKTGKPLIKGKTVTGFTDKGEEIMGVMEILKKRNLESIEDIAERAGANFIRPPGP 200

Query: 165 AA--CVVDGNIITGA 177
                VVDG I+TG+
Sbjct: 201 WDDFTVVDGRIVTGS 215

Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer. Length = 231

>gnl|CDD|153215 cd01744, GATase1_CPSase, Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II

 Score = 42.1 bits (100), Expect = 5e-05
 Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 8/62 (12%)

Query: 75  NATFDEIDPTKYDGLVI---PGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 131
           N   +EI     DG+ +   PG   P  L   D  I  VRK       I  IC G  +LA
Sbjct: 29  NTDAEEILKLDPDGIFLSNGPGD--PALL---DEAIKTVRKLLGKKIPIFGICLGHQLLA 83

Query: 132 AA 133
            A
Sbjct: 84  LA 85

This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is a heterodimer consisting of two polypeptide chains referred to as the small and large subunit. Ammonia an intermediate during the biosynthesis of carbomyl phosphate produced by the hydrolysis of glutamine in the small subunit of the enzyme is delivered via a molecular tunnel between the remotely located carboxyphosphate active site in the large subunit. CPSase IIs belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. This group also contains the sequence from the mammalian urea cycle form which has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I. Length = 178

>gnl|CDD|215729 pfam00117, GATase, Glutamine amidotransferase class-I

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 75  NATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG-QLILAA- 132
           +   +EI     DG++I  G  P         I+ +++   +   I  IC G QL+  A 
Sbjct: 30  DTPAEEILELNPDGIIISPG--PGSPGALGGAIEAIKELRENKIPILGICLGHQLLALAF 87

Query: 133 -ADVVKGRK 140
              V+K +K
Sbjct: 88  GGKVIKAKK 96

Length = 186

>gnl|CDD|233553 TIGR01737, FGAM_synth_I, phosphoribosylformylglycinamidine synthase I

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 6/67 (8%)

Query: 78  FDEIDPTKYDGLVIPGG-RAPEYL-----AMNDSVIDLVRKFSNSGKTIASICHGQLILA 131
           +++     YDG+V+PGG    +YL     A    ++  VR+F+  G  +  IC+G  IL 
Sbjct: 33  YEDGSLPDYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKGVPVLGICNGFQILV 92

Query: 132 AADVVKG 138
            A ++ G
Sbjct: 93  EAGLLPG 99

In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 227

>gnl|CDD|233323 TIGR01230, agmatinase, agmatinase

 Score = 37.0 bits (86), Expect = 0.004
 Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 10/91 (10%)

Query: 34  FGVSVDAACPGKKSGDVCPTAVHQ-STGHQTYSETRGHNFALNATFDEIDPTKYDGLVIP 92
           +G+  DA    +      P A+ + S   + YS     + A+    D  D      L + 
Sbjct: 18  YGIPYDATTSYRPGSRHGPNAIREASWNLEWYSNRLDRDLAMLNVVDAGD------LPLA 71

Query: 93  GGRAPEYLAMNDSVIDLVRKFSNSGKTIASI 123
            G A E   M + + +   +F   GK   +I
Sbjct: 72  FGDARE---MFEKIQEHAEEFLEEGKFPVAI 99

Members of this family include known and predicted examples of agmatinase (agmatine ureohydrolase). The seed includes members of archaea, for which no definitive agmatinase sequence has yet been made available. However, archaeal sequences are phylogenetically close to the experimentally verified B. subtilis sequence. One species of Halobacterium has been demonstrated in vitro to produce agmatine from arginine, but no putrescine from ornithine, suggesting that arginine decarboxylase and agmatinase, rather than arginase and ornithine decarboxylase, lead from Arg to polyamine biosynthesis. Note: a history of early misannotation of members of this family is detailed in PUBMED:10931887. Length = 275

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	219
TIGR01382	166	PfpI intracellular protease, PfpI family. The memb	100.0
cd03169	180	GATase1_PfpI_1 Type 1 glutamine amidotransferase (	100.0
cd03135	163	GATase1_DJ-1 Type 1 glutamine amidotransferase (GA	100.0
cd03134	165	GATase1_PfpI_like A type 1 glutamine amidotransfer	100.0
TIGR01383	179	not_thiJ DJ-1 family protein. This model represent	100.0
cd03137	187	GATase1_AraC_1 AraC transcriptional regulators hav	100.0
cd03139	183	GATase1_PfpI_2 Type 1 glutamine amidotransferase (	100.0
cd03136	185	GATase1_AraC_ArgR_like AraC transcriptional regula	100.0
PRK09393	322	ftrA transcriptional activator FtrA; Provisional	100.0
PF13278	166	DUF4066: Putative amidotransferase; PDB: 3BHN_A 3M	100.0
cd03138	195	GATase1_AraC_2 AraC transcriptional regulators hav	100.0
cd03140	170	GATase1_PfpI_3 Type 1 glutamine amidotransferase (	100.0
PRK11574	196	oxidative-stress-resistance chaperone; Provisional	100.0
COG4977	328	Transcriptional regulator containing an amidase do	100.0
KOG2764	247	consensus Putative transcriptional regulator DJ-1	100.0
cd03147	231	GATase1_Ydr533c_like Type 1 glutamine amidotransfe	99.97
cd03141	221	GATase1_Hsp31_like Type 1 glutamine amidotransfera	99.97
PRK04155	287	chaperone protein HchA; Provisional	99.97
COG0693	188	ThiJ Putative intracellular protease/amidase [Gene	99.97
cd03148	232	GATase1_EcHsp31_like Type 1 glutamine amidotransfe	99.97
PF01965	147	DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 T	99.96
PRK11780	217	isoprenoid biosynthesis protein with amidotransfer	99.95
cd03133	213	GATase1_ES1 Type 1 glutamine amidotransferase (GAT	99.94
cd03132	142	GATase1_catalase Type 1 glutamine amidotransferase	99.91
PRK11249	752	katE hydroperoxidase II; Provisional	99.75
COG3155	217	ElbB Uncharacterized protein involved in an early	99.46
cd01740	238	GATase1_FGAR_AT Type 1 glutamine amidotransferase	99.44
PRK03619	219	phosphoribosylformylglycinamidine synthase I; Prov	99.44
PRK01175	261	phosphoribosylformylglycinamidine synthase I; Prov	99.41
COG0047	231	PurL Phosphoribosylformylglycinamidine (FGAM) synt	99.32
TIGR01737	227	FGAM_synth_I phosphoribosylformylglycinamidine syn	99.3
TIGR03800	184	PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, gl	99.04
cd01653	115	GATase1 Type 1 glutamine amidotransferase (GATase1	99.04
PRK13527	200	glutamine amidotransferase subunit PdxT; Provision	99.01
PF13507	259	GATase_5: CobB/CobQ-like glutamine amidotransferas	98.98
PRK13526	179	glutamine amidotransferase subunit PdxT; Provision	98.98
PRK13525	189	glutamine amidotransferase subunit PdxT; Provision	98.83
cd03128	92	GAT_1 Type 1 glutamine amidotransferase (GATase1)-	98.82
PRK07053	234	glutamine amidotransferase; Provisional	98.69
PRK08250	235	glutamine amidotransferase; Provisional	98.68
PLN02832	248	glutamine amidotransferase subunit of pyridoxal 5'	98.65
cd03130	198	GATase1_CobB Type 1 glutamine amidotransferase (GA	98.63
PRK13143	200	hisH imidazole glycerol phosphate synthase subunit	98.61
cd01750	194	GATase1_CobQ Type 1 glutamine amidotransferase (GA	98.56
TIGR01857	1239	FGAM-synthase phosphoribosylformylglycinamidine sy	98.53
PRK06490	239	glutamine amidotransferase; Provisional	98.48
cd01749	183	GATase1_PB Glutamine Amidotransferase (GATase_I) i	98.48
PLN03206	1307	phosphoribosylformylglycinamidine synthase; Provis	98.47
cd01741	188	GATase1_1 Subgroup of proteins having the Type 1 g	98.43
TIGR01735	1310	FGAM_synt phosphoribosylformylglycinamidine syntha	98.38
PRK01077	451	cobyrinic acid a,c-diamide synthase; Validated	98.38
PRK05297	1290	phosphoribosylformylglycinamidine synthase; Provis	98.35
CHL00188	210	hisH imidazole glycerol phosphate synthase subunit	98.34
COG0311	194	PDX2 Predicted glutamine amidotransferase involved	98.34
cd01748	198	GATase1_IGP_Synthase Type 1 glutamine amidotransfe	98.28
PRK13141	205	hisH imidazole glycerol phosphate synthase subunit	98.26
PHA03366	1304	FGAM-synthase; Provisional	98.24
cd01744	178	GATase1_CPSase Small chain of the glutamine-depend	98.24
PRK06895	190	putative anthranilate synthase component II; Provi	98.21
PRK05665	240	amidotransferase; Provisional	98.17
PRK09065	237	glutamine amidotransferase; Provisional	98.16
TIGR01739	1202	tegu_FGAM_synt herpesvirus tegument protein/v-FGAM	98.15
PRK13146	209	hisH imidazole glycerol phosphate synthase subunit	98.13
TIGR00888	188	guaA_Nterm GMP synthase (glutamine-hydrolyzing), N	98.07
PF07685	158	GATase_3: CobB/CobQ-like glutamine amidotransferas	97.95
PRK07567	242	glutamine amidotransferase; Provisional	97.94
TIGR00379	449	cobB cobyrinic acid a,c-diamide synthase. This mod	97.94
PRK13170	196	hisH imidazole glycerol phosphate synthase subunit	97.93
cd01742	181	GATase1_GMP_Synthase Type 1 glutamine amidotransfe	97.92
PRK13181	199	hisH imidazole glycerol phosphate synthase subunit	97.92
TIGR01855	196	IMP_synth_hisH imidazole glycerol phosphate syntha	97.91
PF01174	188	SNO: SNO glutamine amidotransferase family; InterP	97.91
COG0518	198	GuaA GMP synthase - Glutamine amidotransferase dom	97.89
PRK07765	214	para-aminobenzoate synthase component II; Provisio	97.89
PRK08007	187	para-aminobenzoate synthase component II; Provisio	97.85
PRK00784	488	cobyric acid synthase; Provisional	97.84
PRK06774	191	para-aminobenzoate synthase component II; Provisio	97.83
PLN02617	538	imidazole glycerol phosphate synthase hisHF	97.82
COG0118	204	HisH Glutamine amidotransferase [Amino acid transp	97.82
PRK12564	360	carbamoyl phosphate synthase small subunit; Review	97.77
PRK05670	189	anthranilate synthase component II; Provisional	97.77
TIGR00566	188	trpG_papA glutamine amidotransferase of anthranila	97.76
PRK05637	208	anthranilate synthase component II; Provisional	97.73
PRK13566	720	anthranilate synthase; Provisional	97.71
PF00117	192	GATase: Glutamine amidotransferase class-I; InterP	97.71
cd01745	189	GATase1_2 Subgroup of proteins having the Type 1 g	97.68
CHL00197	382	carA carbamoyl-phosphate synthase arginine-specifi	97.64
cd01743	184	GATase1_Anthranilate_Synthase Type 1 glutamine ami	97.63
PRK08857	193	para-aminobenzoate synthase component II; Provisio	97.61
CHL00101	190	trpG anthranilate synthase component 2	97.61
PLN02335	222	anthranilate synthase	97.6
PRK13152	201	hisH imidazole glycerol phosphate synthase subunit	97.57
PRK00758	184	GMP synthase subunit A; Validated	97.57
TIGR01815	717	TrpE-clade3 anthranilate synthase, alpha proteobac	97.56
PRK07649	195	para-aminobenzoate/anthranilate synthase glutamine	97.52
COG1797	451	CobB Cobyrinic acid a,c-diamide synthase [Coenzyme	97.5
cd03144	114	GATase1_ScBLP_like Type 1 glutamine amidotransfera	97.5
TIGR01368	358	CPSaseIIsmall carbamoyl-phosphate synthase, small	97.49
PRK12838	354	carbamoyl phosphate synthase small subunit; Review	97.49
PRK13896	433	cobyrinic acid a,c-diamide synthase; Provisional	97.48
PRK13142	192	hisH imidazole glycerol phosphate synthase subunit	97.47
PRK14004	210	hisH imidazole glycerol phosphate synthase subunit	97.43
cd03146	212	GAT1_Peptidase_E Type 1 glutamine amidotransferase	97.33
PRK06278	476	cobyrinic acid a,c-diamide synthase; Validated	97.22
COG0512	191	PabA Anthranilate/para-aminobenzoate synthases com	97.2
PRK05282	233	(alpha)-aspartyl dipeptidase; Validated	97.14
TIGR00313	475	cobQ cobyric acid synthase CobQ.	97.13
PLN02347	536	GMP synthetase	97.11
PF09825	367	BPL_N: Biotin-protein ligase, N terminal; InterPro	96.93
PRK00074	511	guaA GMP synthase; Reviewed	96.93
cd01746	235	GATase1_CTP_Synthase Type 1 glutamine amidotransfe	96.91
PLN02771	415	carbamoyl-phosphate synthase (glutamine-hydrolyzin	96.84
PRK09522	531	bifunctional glutamine amidotransferase/anthranila	96.77
KOG3210	226	consensus Imidazoleglycerol-phosphate synthase sub	96.7
PRK11366	254	puuD gamma-glutamyl-gamma-aminobutyrate hydrolase;	96.58
PRK14607	534	bifunctional glutamine amidotransferase/anthranila	96.48
PRK06186	229	hypothetical protein; Validated	96.46
PRK05368	302	homoserine O-succinyltransferase; Provisional	96.33
PRK05380	533	pyrG CTP synthetase; Validated	96.32
cd01747	273	GATase1_Glutamyl_Hydrolase Type 1 glutamine amidot	95.99
TIGR01823	742	PabB-fungal aminodeoxychorismate synthase, fungal	95.89
COG0505	368	CarA Carbamoylphosphate synthase small subunit [Am	95.87
PLN02327	557	CTP synthase	95.67
COG2071	243	Predicted glutamine amidotransferases [General fun	95.63
TIGR00337	525	PyrG CTP synthase. CTP synthase is involved in pyr	95.45
KOG3179	245	consensus Predicted glutamine synthetase [Nucleoti	95.31
COG1492	486	CobQ Cobyric acid synthase [Coenzyme metabolism]	95.18
cd03129	210	GAT1_Peptidase_E_like Type 1 glutamine amidotransf	94.97
PF13587	38	DJ-1_PfpI_N: N-terminal domain of DJ-1_PfpI family	94.83
PLN02889	918	oxo-acid-lyase/anthranilate synthase	94.78
PF03575	154	Peptidase_S51: Peptidase family S51; InterPro: IPR	94.42
COG0504	533	PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide	94.38
COG3442	250	Predicted glutamine amidotransferase [General func	94.37
KOG2764	247	consensus Putative transcriptional regulator DJ-1	94.04
KOG0370	1435	consensus Multifunctional pyrimidine synthesis pro	93.78
TIGR02069	250	cyanophycinase cyanophycinase. This model describe	93.56
PF07722	217	Peptidase_C26: Peptidase C26; InterPro: IPR011697	93.45
KOG1907	1320	consensus Phosphoribosylformylglycinamidine syntha	93.33
cd03131	175	GATase1_HTS Type 1 glutamine amidotransferase (GAT	92.37
COG4635	175	HemG Flavodoxin [Energy production and conversion	92.2
PRK02645	305	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	91.94
KOG2387	585	consensus CTP synthase (UTP-ammonia lyase) [Nucleo	91.32
COG3340	224	PepE Peptidase E [Amino acid transport and metabol	90.6
cd03145	217	GAT1_cyanophycinase Type 1 glutamine amidotransfer	90.54
PF09822	271	ABC_transp_aux: ABC-type uncharacterized transport	90.03
PF08532	207	Glyco_hydro_42M: Beta-galactosidase trimerisation	87.98
COG4285	253	Uncharacterized conserved protein [Function unknow	87.95
PRK03708	277	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	87.36
PRK11104	177	hemG protoporphyrinogen oxidase; Provisional	86.92
cd03143	154	A4_beta-galactosidase_middle_domain A4 beta-galact	86.67
PRK01231	295	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	86.43
PRK02155	291	ppnK NAD(+)/NADH kinase family protein; Provisiona	86.42
KOG0623	541	consensus Glutamine amidotransferase/cyclase [Amin	86.04
KOG0026	223	consensus Anthranilate synthase, beta chain [Amino	84.51
PRK04539	296	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	83.97
PRK03378	292	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	83.41
PF03698	80	UPF0180: Uncharacterised protein family (UPF0180);	81.8

>TIGR01382 PfpI intracellular protease, PfpI family

Probab=100.00  E-value=4.8e-36  Score=228.29  Aligned_cols=166  Identities=42%  Similarity=0.731  Sum_probs=151.4

Q ss_pred             EEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEE
Q 027785           10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGL   89 (219)
Q Consensus        10 kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l   89 (219)
                      ||+|++++||++.|+..+.++|+.+|+++.++|++++                ++.++.|..+.++.++++.++.+||+|
T Consensus         1 ~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~----------------~v~~~~g~~i~~~~~~~~~~~~~~D~v   64 (166)
T TIGR01382         1 KLLVLTTDEFEDSELLYPLDRLREAGHEVDTVSKEAG----------------TTVGKHGYSVTVDATIDEVNPEEYDAL   64 (166)
T ss_pred             CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEecCCC----------------ceeccCCceeeccCChhhCCHHHCcEE
Confidence            6999999999999999999999999999999998775                567788999999999988876789999


Q ss_pred             EEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcceEEE
Q 027785           90 VIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVV  169 (219)
Q Consensus        90 iipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~~~v~  169 (219)
                      +||||.++..+..++.+.+||+++++++++|+++|+|+++|+++|+|+||++|+||...+.+++.+..+.+.+   .+|+
T Consensus        65 vv~Gg~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~---~~v~  141 (166)
T TIGR01382        65 VIPGGRAPEYLRLNNKAVRLVREFVEKGKPVAAICHGPQLLISAGVLRGKKLTSYPAIIDDVKNAGAEYVDIE---VVVV  141 (166)
T ss_pred             EECCCCCHHHhccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhcCccCCCEEEcCccHHHHHHHCCCeEEcCC---CEEE
Confidence            9999987655567889999999999999999999999999999999999999999999999998888887743   3899


Q ss_pred             cCCeEeCCCCCCHHHHHHHHHHHHc
Q 027785          170 DGNIITGATYEGHPEFIRLFLKALG  194 (219)
Q Consensus       170 dg~liT~~g~~s~~~~~l~li~~l~  194 (219)
                      |||+|||+|+.++.+|+.++++.|.
T Consensus       142 dg~iiT~~~~~~~~~fa~~~~~~l~  166 (166)
T TIGR01382       142 DGNLVTSRVPDDLPAFNREFLKLLG  166 (166)
T ss_pred             ECCEEEeCCcccHHHHHHHHHHHhC
Confidence            9999999999999999999999863

The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.

>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=100.00  E-value=2.8e-35  Score=226.99  Aligned_cols=180  Identities=54%  Similarity=0.984  Sum_probs=151.0

Q ss_pred             EEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEE
Q 027785           10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGL   89 (219)
Q Consensus        10 kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l   89 (219)
                      ||+|+++||+++.|+..|+++|+++|++++++|+++++.++.........+.+.+....|..+.++.+++++++.+||+|
T Consensus         1 kv~il~~~g~~~~e~~~p~~~l~~ag~~v~~vs~~~~~~~~v~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l   80 (180)
T cd03169           1 KILILTGDFVEDYEVMVPFQALQEVGHEVDVVAPGKKKGDTVVTAIHDFPGWQTYTEKPGHRFAVTADFDEVDPDDYDAL   80 (180)
T ss_pred             CEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCCCCccccccccccccccchhccCCcEEeccCCcccCCHhHCCEE
Confidence            69999999999999999999999999999999999874322111111111122344456888999999998877789999


Q ss_pred             EEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcceEEE
Q 027785           90 VIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVV  169 (219)
Q Consensus        90 iipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~~~v~  169 (219)
                      +||||.++..+..++.+.+||+++++++++|+++|+|+++|+++|+|+||++|+||...+.+++.+..+.+..    +++
T Consensus        81 iv~GG~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~agll~g~~~T~h~~~~~~~~~~~~~~~~~~----~v~  156 (180)
T cd03169          81 VIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAAAGVLKGRRCTAYPACKPEVELAGGTVVDDG----VVV  156 (180)
T ss_pred             EEcCCCChhhhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHHcCccCCCEEecccchHHHHHHCCCEEeecc----EEE
Confidence            9999987655556789999999999999999999999999999999999999999999999998766665543    889


Q ss_pred             cCCeEeCCCCCCHHHHHHHHHHHH
Q 027785          170 DGNIITGATYEGHPEFIRLFLKAL  193 (219)
Q Consensus       170 dg~liT~~g~~s~~~~~l~li~~l  193 (219)
                      |||+|||+|+.++.+|+.++++.|
T Consensus       157 D~~iiT~~~~~~~~~f~~~~~~~l  180 (180)
T cd03169         157 DGNLVTAQAWPDHPAFLREFLKLL  180 (180)
T ss_pred             ECCEEEecCCchHHHHHHHHHHhC
Confidence            999999999999999999999864

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1

Probab=100.00  E-value=1.6e-35  Score=224.65  Aligned_cols=162  Identities=36%  Similarity=0.587  Sum_probs=143.5

Q ss_pred             EEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEE
Q 027785           11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLV   90 (219)
Q Consensus        11 v~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~li   90 (219)
                      |+|+++|||++.|+..+.++|+.+||+++++|+++++               ...++.|..+.++..+++.++.+||+|+
T Consensus         1 v~il~~~gf~~~e~~~~~~~~~~a~~~v~~vs~~~~~---------------~~~~~~g~~v~~~~~~~~~~~~~~D~li   65 (163)
T cd03135           1 VLVILADGFEEIEAVTPVDVLRRAGIEVTTASLEKKL---------------AVGSSHGIKVKADKTLSDVNLDDYDAIV   65 (163)
T ss_pred             CEEEecCCcchHHHHHHHHHHHHCCCEEEEEEcCCCc---------------eEeccCCCEEEecCCHhHcCCCCCCEEE
Confidence            6899999999999999999999999999999998763               2335789999999999988777999999


Q ss_pred             EcCCC-CcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcceEEE
Q 027785           91 IPGGR-APEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVV  169 (219)
Q Consensus        91 ipGG~-~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~~~v~  169 (219)
                      ||||. ++..+..++.+++||+++++++++|+++|+|+++|+++|+|+||++|+||...+.+  .+.++.+..    +|+
T Consensus        66 ipGg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~g~~~La~aglL~g~~~T~~~~~~~~~--~~~~~~~~~----~v~  139 (163)
T cd03135          66 IPGGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAAPAVLAKAGLLKGKKATCYPGFEDKL--GGANYVDEP----VVV  139 (163)
T ss_pred             ECCCCchHHHHHhCHHHHHHHHHHHHcCCEEEEEchhHHHHHHcCCcCCCeEEECchHHHhc--CCCeEecCC----EEE
Confidence            99998 55556678999999999999999999999999999999999999999998876555  345565553    899


Q ss_pred             cCCeEeCCCCCCHHHHHHHHHHHH
Q 027785          170 DGNIITGATYEGHPEFIRLFLKAL  193 (219)
Q Consensus       170 dg~liT~~g~~s~~~~~l~li~~l  193 (219)
                      |||+|||+|+.++.|+++++|+++
T Consensus       140 dg~l~T~~g~~s~~d~al~li~~l  163 (163)
T cd03135         140 DGNIITSRGPGTAFEFALKIVEAL  163 (163)
T ss_pred             ECCEEEcCCcccHHHHHHHHHHhC
Confidence            999999999999999999999874

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly

>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus

Probab=100.00  E-value=1.6e-35  Score=225.23  Aligned_cols=162  Identities=40%  Similarity=0.690  Sum_probs=148.5

Q ss_pred             EEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCC-CCCCCCCCcccccCCCcceeccccCC-ccccccCccCCCCCCcc
Q 027785           10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPG-KKSGDVCPTAVHQSTGHQTYSETRGH-NFALNATFDEIDPTKYD   87 (219)
Q Consensus        10 kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~g~-~i~~~~~~~~~~~~~~D   87 (219)
                      ||+|+++|||++.|+..+.++|+.+|+++++++++ ++                ++.++.|. .+.++..+++.++.+||
T Consensus         1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~v~~vs~~~~~----------------~v~~~~g~~~i~~d~~~~~~~~~~~D   64 (165)
T cd03134           1 KVAILAADGFEDVELTYPLYRLREAGAEVVVAGPEAGG----------------EIQGKHGYDTVTVDLTIADVDADDYD   64 (165)
T ss_pred             CEEEEcCCCchHHHHHHHHHHHHHCCCEEEEEccCCCc----------------ccccCcCceeecCCCChHHCCHHHCC
Confidence            69999999999999999999999999999999998 55                57778898 99999999887767899


Q ss_pred             EEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcceE
Q 027785           88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAAC  167 (219)
Q Consensus        88 ~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~~~  167 (219)
                      +|+||||.++..+..++.+++||+++++++++|+++|+|+++|+++|+|+|+++|+||...+.+++.+.++.+..    +
T Consensus        65 ~lvvpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~~ic~G~~~La~aglL~g~~~T~h~~~~~~~~~~~~~~~~~~----~  140 (165)
T cd03134          65 ALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKPVAAICHGPWVLISAGVVRGRKLTSYPSIKDDLINAGANWVDEE----V  140 (165)
T ss_pred             EEEECCCCChhhhccCHHHHHHHHHHHHcCCeEEEEchHHHHHHhcCccCCCEeeCCHhHHHHHHHcCCeEecCC----E
Confidence            999999986655567899999999999999999999999999999999999999999999999998877777654    8


Q ss_pred             EEcCCeEeCCCCCCHHHHHHHHHH
Q 027785          168 VVDGNIITGATYEGHPEFIRLFLK  191 (219)
Q Consensus       168 v~dg~liT~~g~~s~~~~~l~li~  191 (219)
                      ++|||+|||+|+.++.+|+..+++
T Consensus       141 v~dg~iiT~~~~~~~~~f~~~~~~  164 (165)
T cd03134         141 VVDGNLITSRNPDDLPAFNRAILK  164 (165)
T ss_pred             EEECCEEEecCcchHHHHHHHHHh
Confidence            999999999999999999999986

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.

>TIGR01383 not_thiJ DJ-1 family protein

Probab=100.00  E-value=3.6e-35  Score=226.04  Aligned_cols=170  Identities=30%  Similarity=0.476  Sum_probs=146.6

Q ss_pred             EEEEEecCCCCchhhHHHHHHHHhCCCeEEE--ecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785           10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDA--ACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus        10 kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~--~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      ||+|+++|||++.|+..+.++|+.+|+++++  +|++++.               ++.++.|..+.++..+++.+..+||
T Consensus         1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~~~~~~~s~~g~~---------------~v~~~~g~~v~~~~~~~~~~~~~~D   65 (179)
T TIGR01383         1 KVLVPLAPGFEEMEAVITVDVLRRAGIKVTVAIVGLNGKL---------------PVKGSRGVKILADASLEDVDLEEFD   65 (179)
T ss_pred             CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEEeccCCCc---------------ceEcCCCCEEeCCCCHHHCCcccCC
Confidence            6999999999999999999999999987776  8887542               5778889999999999887667899


Q ss_pred             EEEEcCCCC-cccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcce
Q 027785           88 GLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAA  166 (219)
Q Consensus        88 ~liipGG~~-~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~~  166 (219)
                      +|+||||.. ...+..++.+.+||+++++++++|+++|+|+++||++|+|+||++|+||...+.+.+.  .+....   .
T Consensus        66 ~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~aGlL~g~~~T~~~~~~~~~~~~--~~~~~~---~  140 (179)
T TIGR01383        66 AIVLPGGMPGAENLRNSKLLLNILKKQESKGKLVAAICAAPAVLLAAGVLLGKKATCYPGFKEKLLNG--NYSVNE---A  140 (179)
T ss_pred             EEEECCCchHHHHHhhCHHHHHHHHHHHHCCCEEEEEChhHHHHHhcCCCCCCcEEECccHHHhccCC--ceeCCC---C
Confidence            999999964 4445678999999999999999999999999999999999999999999877655432  343233   4


Q ss_pred             EEEcCCeEeCCCCCCHHHHHHHHHHHHcccccc
Q 027785          167 CVVDGNIITGATYEGHPEFIRLFLKALGGTITG  199 (219)
Q Consensus       167 ~v~dg~liT~~g~~s~~~~~l~li~~l~~~~~~  199 (219)
                      +++||+++||+|+.++.++++++|+++.|+...
T Consensus       141 ~v~dg~i~T~~g~~a~~d~~l~li~~~~g~~~a  173 (179)
T TIGR01383       141 VVVDGNIITSRGPGTAIEFALALVELLCGKEKA  173 (179)
T ss_pred             EEEeCCEEECCChhhHHHHHHHHHHHhcCHHHH
Confidence            899999999999999999999999999887543

This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.

>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=100.00  E-value=4.1e-35  Score=227.29  Aligned_cols=170  Identities=19%  Similarity=0.278  Sum_probs=151.1

Q ss_pred             EEEEecCCCCchhhHHHHHHHHhCC-------CeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCC
Q 027785           11 VLLLCGDYMEDYEAMVPFQALLAFG-------VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDP   83 (219)
Q Consensus        11 v~il~~~g~~~~e~~~~~~~l~~ag-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~   83 (219)
                      |+|+++|||++.|+..+.++|+.+|       +++.++|++++                ++.++.|.++.+|..+++  .
T Consensus         1 i~ill~~gf~~~~~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~----------------~v~~~~g~~v~~d~~~~~--~   62 (187)
T cd03137           1 VAVLVFPGVSLLDLSGPAEVFGEANRALGPPAYELRVCSPEGG----------------PVRSSSGLSLVADAGLDA--L   62 (187)
T ss_pred             CEEEEeCCCChhHHhHHHHHHHHHHhhcCCCCeEEEEEeCCCC----------------ceeecCCcEEEcCcCccc--c
Confidence            6899999999999999999999988       89999999876                678889999999998874  3


Q ss_pred             CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHH-CCCeEecCC
Q 027785           84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-AGASWIEPE  162 (219)
Q Consensus        84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~-~g~~~~~~~  162 (219)
                      .+||+|+||||.+......++.+.+||+++++++++|+++|+|+++|+++|+|+|+++|+||...+.+++ +|...+..+
T Consensus        63 ~~~D~liipGg~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~aGlL~~~~~t~~~~~~~~l~~~~~~~~~~~~  142 (187)
T cd03137          63 AAADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGAFVLAEAGLLDGRRATTHWAYAEDLARRFPAVRVDPD  142 (187)
T ss_pred             CCCCEEEECCCcccccccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHHccCcCCCceeehHhhHHHHHHHCCCCEEecC
Confidence            5899999999987655677899999999999999999999999999999999999999999999999988 565555433


Q ss_pred             CcceEEEcCCeEeCCCCCCHHHHHHHHHHHHccccccc
Q 027785          163 TMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGS  200 (219)
Q Consensus       163 ~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~~~~~~  200 (219)
                      .  .+++||+++||+|+.++.|+++++|+++.|+..++
T Consensus       143 ~--~~v~dg~i~Ta~g~~~~~d~~l~li~~~~g~~~a~  178 (187)
T cd03137         143 V--LYVDDGNVWTSAGVTAGIDLCLHLVREDLGAAVAN  178 (187)
T ss_pred             C--EEEecCCEEEcccHHHHHHHHHHHHHHHhCHHHHH
Confidence            2  38899999999999999999999999988875544

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=100.00  E-value=3.1e-35  Score=227.16  Aligned_cols=174  Identities=24%  Similarity=0.291  Sum_probs=152.7

Q ss_pred             EEEEecCCCCchhhHHHHHHHHhCC-----CeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCC
Q 027785           11 VLLLCGDYMEDYEAMVPFQALLAFG-----VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTK   85 (219)
Q Consensus        11 v~il~~~g~~~~e~~~~~~~l~~ag-----~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~   85 (219)
                      |+|+++|||++.|+..+.++|+.+|     +++.++|++++                ++.++.|..+.+|.++++.  .+
T Consensus         1 i~ill~~gf~~~~~~~~~d~~~~a~~~~~~~~v~~vs~~~~----------------~v~~~~g~~i~~d~~~~~~--~~   62 (183)
T cd03139           1 VGILLFPGVEVLDVIGPYEVFGRAPRLAAPFEVFLVSETGG----------------PVSSRSGLTVLPDTSFADP--PD   62 (183)
T ss_pred             CEEEEeCCCCEehheeHHHHHHHhhccCCCEEEEEEECCCC----------------ceEeCCCCEEcCCcccccC--CC
Confidence            6899999999999999999999999     99999999876                6788899999999998864  48


Q ss_pred             ccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcc
Q 027785           86 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMA  165 (219)
Q Consensus        86 ~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~  165 (219)
                      ||+|+||||.++..+..++.+++||+++++++|+|+++|+|+++|+++|+|+|+++|+||...+.+++.+..+....   
T Consensus        63 ~D~lvipgg~~~~~~~~~~~~~~~l~~~~~~~k~i~aic~g~~~La~agll~g~~~t~~~~~~~~~~~~~~~~~~~~---  139 (183)
T cd03139          63 LDVLLVPGGGGTRALVNDPALLDFIRRQAARAKYVTSVCTGALLLAAAGLLDGRRATTHWAAIDWLKEFGAIVVVDA---  139 (183)
T ss_pred             CCEEEECCCcchhhhccCHHHHHHHHHhcccCCEEEEEchHHHHHHhcCCcCCCeeeecHhHHHHHHHhCCCCCCCC---
Confidence            99999999987665678899999999999999999999999999999999999999999999999988644432222   


Q ss_pred             eEEEcCCeEeCCCCCCHHHHHHHHHHHHccccccc--cceEE
Q 027785          166 ACVVDGNIITGATYEGHPEFIRLFLKALGGTITGS--DKRIL  205 (219)
Q Consensus       166 ~~v~dg~liT~~g~~s~~~~~l~li~~l~~~~~~~--~~~~~  205 (219)
                      .+++||+++||+|+.++.++++++|+++.++...+  ++.++
T Consensus       140 ~~v~dg~i~T~~g~~a~~~~~l~ii~~~~g~~~a~~~a~~~~  181 (183)
T cd03139         140 RWVVDGNIWTSGGVSAGIDMALALVARLFGEELAQAVALLIE  181 (183)
T ss_pred             EEEecCCEEEcCcHHHHHHHHHHHHHHHhCHHHHHHHHHHhc
Confidence            48999999999999999999999999988885544  44433

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=100.00  E-value=1.6e-34  Score=223.69  Aligned_cols=167  Identities=16%  Similarity=0.165  Sum_probs=148.3

Q ss_pred             EEEEecCCCCchhhHHHHHHHHhCC-------CeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCC
Q 027785           11 VLLLCGDYMEDYEAMVPFQALLAFG-------VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDP   83 (219)
Q Consensus        11 v~il~~~g~~~~e~~~~~~~l~~ag-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~   83 (219)
                      |+|+++|||+..|+..++|+|+.++       |+++++|.+++                ++.++.|.++.+|..+.+.  
T Consensus         1 i~il~~~g~~~~~~~~~~dv~~~a~~~~~~~~~~v~~vs~~~~----------------~v~~~~g~~i~~d~~~~~~--   62 (185)
T cd03136           1 FGFLLLPGFSLLALASAIEPLRAANRLAGRELYRWRVLSLDGA----------------PVTSSNGLRVAPDAALEDA--   62 (185)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHHHHHhcCCcceEEEEEcCCCC----------------eeecCCCcEEeCCcccccc--
Confidence            6899999999999999999999875       88999998875                6788889999999988754  


Q ss_pred             CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHH-CCC-eEecC
Q 027785           84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-AGA-SWIEP  161 (219)
Q Consensus        84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~-~g~-~~~~~  161 (219)
                      .+||+|+||||.+.. ...++.+++||++++++++.|+++|+|+++|+++|+|+|+++|+||...+.+++ +|. ++.+.
T Consensus        63 ~~~D~liipgg~~~~-~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La~aGll~g~~~t~~~~~~~~~~~~~p~~~~~~~  141 (185)
T cd03136          63 PPLDYLFVVGGLGAR-RAVTPALLAWLRRAARRGVALGGIDTGAFLLARAGLLDGRRATVHWEHLEAFAEAFPRVQVTRD  141 (185)
T ss_pred             CCCCEEEEeCCCCcc-ccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHccccCCCeeEECcccHHHHHHHCCCCccccC
Confidence            589999999997665 678899999999999999999999999999999999999999999999999987 444 44333


Q ss_pred             CCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHccccccc
Q 027785          162 ETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGS  200 (219)
Q Consensus       162 ~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~~~~~~  200 (219)
                          .++.||++||++|+.+++++++++++++.++..++
T Consensus       142 ----~~v~dg~i~Ta~g~~~~~d~~l~ii~~~~g~~~a~  176 (185)
T cd03136         142 ----LFEIDGDRLTCAGGTAALDLMLELIARDHGAALAA  176 (185)
T ss_pred             ----eEEEcCCEEEeccHHHHHHHHHHHHHHHhCHHHHH
Confidence                38899999999999999999999999998886544

A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee

>PRK09393 ftrA transcriptional activator FtrA; Provisional

Probab=100.00  E-value=4.2e-34  Score=239.22  Aligned_cols=183  Identities=21%  Similarity=0.302  Sum_probs=157.5

Q ss_pred             CCCCCCCCCEEEEEecCCCCchhhHHHHHHHHhCC-------CeEEEecCCCCCCCCCCcccccCCCcceeccccCCccc
Q 027785            1 MANSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFG-------VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFA   73 (219)
Q Consensus         1 ~~~~~~~~~kv~il~~~g~~~~e~~~~~~~l~~ag-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~   73 (219)
                      |++|+  +++|+|+++|||+..|+..+.|+|+.++       |++++++.+++                ++.++.|..+.
T Consensus         4 ~~~~~--~~~v~ill~~gf~~~~~~~~~dvl~~a~~~~~~~~~~v~~vs~~~~----------------~v~ss~g~~i~   65 (322)
T PRK09393          4 MMTMH--NHLVVALAYDGLCTFEFGCAVEIFGLPRPELGVDWYRFAVAAVEPG----------------PLRAAGGITVV   65 (322)
T ss_pred             ccccc--ccEEEEEEcCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEECCCC----------------ceEeCCCcEEe
Confidence            66777  7899999999999999999999997653       68889998775                68889999999


Q ss_pred             cccCccCCCCCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHH
Q 027785           74 LNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA  153 (219)
Q Consensus        74 ~~~~~~~~~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~  153 (219)
                      +|..+++.  ++||+||||||.+... ..++.+.+||+++++++++|++||+|+++||++|+|+|+++|+||...+.+++
T Consensus        66 ~d~~~~~~--~~~D~livpGg~~~~~-~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~aGlL~~~~~Tth~~~~~~~~~  142 (322)
T PRK09393         66 ADGGLELL--DRADTIVIPGWRGPDA-PVPEPLLEALRAAHARGARLCSICSGVFVLAAAGLLDGRRATTHWRYAERLQA  142 (322)
T ss_pred             CCCCcccc--CCCCEEEECCCCcccc-cCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhccCCCCCeeeecHhhHHHHHH
Confidence            99999864  5899999999976543 45889999999999999999999999999999999999999999999999987


Q ss_pred             -CCCeEecCCCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHccccccc--cceEEE
Q 027785          154 -AGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGS--DKRILF  206 (219)
Q Consensus       154 -~g~~~~~~~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~~~~~~--~~~~~~  206 (219)
                       +|...+..+.  .+++|||++||+|..++.+++++++++..+....+  ++.+++
T Consensus       143 ~~p~~~~~~~~--~~v~~g~iiT~~G~~a~~d~~l~li~~~~g~~~a~~va~~ll~  196 (322)
T PRK09393        143 RYPAIRVDPDV--LYVDEGQILTSAGSAAGIDLCLHLVRRDFGSEAANRVARRLVV  196 (322)
T ss_pred             HCCCCEEeCCc--eEEecCCEEecccHHHHHHHHHHHHHHHhCHHHHHHHHHHhCc
Confidence             6766655542  48899999999999999999999999888775444  444444

>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C

Probab=100.00  E-value=1.7e-33  Score=214.30  Aligned_cols=158  Identities=25%  Similarity=0.348  Sum_probs=135.7

Q ss_pred             EecCCCCchhhHHHHHHHHhCC-------CeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCc
Q 027785           14 LCGDYMEDYEAMVPFQALLAFG-------VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKY   86 (219)
Q Consensus        14 l~~~g~~~~e~~~~~~~l~~ag-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~   86 (219)
                      |++|||+..|++.+.|+|+.++       |++.+++.+++                ++.++.|..+.++..+++.  .++
T Consensus         1 Ll~~gf~~~~~~~~~d~l~~a~~~~~~~~~~~~~vs~~~~----------------~v~~s~g~~i~~~~~~~~~--~~~   62 (166)
T PF13278_consen    1 LLFPGFSLLELAGPLDVLRAANRLSGEPLFEVRLVSPTGG----------------PVTSSSGLRIQPDGSLDDA--PDF   62 (166)
T ss_dssp             EE-TTB-HHHHHHHHHHHTTCTHHCTTTTEEEEEEESSSC----------------EEEBTTSEEEEESEETCCC--SCC
T ss_pred             CCCCCCcHHHHHHHHHHHHhchhhcCCCCeEEEEEecCCC----------------eeeecCCeEEEeccChhhc--ccC
Confidence            6899999999999999999998       99999999876                7889999999999999974  689


Q ss_pred             cEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHH-CCCeEecCCCcc
Q 027785           87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-AGASWIEPETMA  165 (219)
Q Consensus        87 D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~-~g~~~~~~~~~~  165 (219)
                      |+|+||||........++.+++||+++++++++|+++|+|+++||++|+|+|+++|+||...+.+++ ++...+..+.  
T Consensus        63 D~lvvpg~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~aGlL~g~~~tt~~~~~~~l~~~~p~~~~~~~~--  140 (166)
T PF13278_consen   63 DILVVPGGPGFDAAAKDPALLDWLRQQHAQGTYIAAICTGALLLAEAGLLDGRRATTHWSLAEALRERFPNVNVVSDQ--  140 (166)
T ss_dssp             SEEEEE-STTHHHHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHTTTTTTSEE---GGGHHHHHHCTTCEEE-TSS--
T ss_pred             CEEEeCCCCCchhcccCHHHHHHhhhhhccceEEeeeehHHHHHhhhhccCcccccchHHHHHHHHHhCCCccccCCC--
Confidence            9999999988434567899999999999999999999999999999999999999999999999998 4666554222  


Q ss_pred             eEEEcCCeEeCCCCCCHHHHHHHHHH
Q 027785          166 ACVVDGNIITGATYEGHPEFIRLFLK  191 (219)
Q Consensus       166 ~~v~dg~liT~~g~~s~~~~~l~li~  191 (219)
                      .+|.|||++||+|..+++|+++++||
T Consensus       141 ~~v~dg~i~Ta~g~~~~~dl~l~li~  166 (166)
T PF13278_consen  141 LFVDDGNIITAGGPTAAIDLALYLIE  166 (166)
T ss_dssp             SEEEETTEEEESSCCHHHHHHHHHHH
T ss_pred             EEEECCCeEEecHHHHHHHHHHHHhC
Confidence            49999999999999999999999996

...

>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=100.00  E-value=2e-33  Score=219.20  Aligned_cols=169  Identities=22%  Similarity=0.235  Sum_probs=147.7

Q ss_pred             EEEEecCCCCchhhHHHHHHHHhC------------CCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCc
Q 027785           11 VLLLCGDYMEDYEAMVPFQALLAF------------GVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATF   78 (219)
Q Consensus        11 v~il~~~g~~~~e~~~~~~~l~~a------------g~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~   78 (219)
                      |+|+++|||...++..++|+|+.+            +|+++++|.+++                ++.++.|..+.+|..+
T Consensus         1 i~ill~~gf~~~~~~~~~e~f~~an~~~~~~~~~~~~~~v~~vs~~~~----------------~v~s~~g~~i~~d~~~   64 (195)
T cd03138           1 VTLLAYPGALASSLAGLLDLLRAANRLARRQQGGAPPFEVRLVSLDGG----------------PVLLAGGILILPDATL   64 (195)
T ss_pred             CEEEEcCCchHHHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEEcCCCC----------------eeecCCCceecccccc
Confidence            689999999999999999999964            488999998876                6778889999999988


Q ss_pred             cCCCCCCccEEEEcCCCCc-c--cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHH-C
Q 027785           79 DEIDPTKYDGLVIPGGRAP-E--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-A  154 (219)
Q Consensus        79 ~~~~~~~~D~liipGG~~~-~--~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~-~  154 (219)
                      ++.  .+||+|+||||.+. .  .+..++.+++||+++++++++|+++|+|+++|+++|+|+||++|+||...+.+++ +
T Consensus        65 ~~~--~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~t~~~~~~~~~~~~~  142 (195)
T cd03138          65 ADV--PAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEAGLLDGRRATTHWWLAPQFRRRF  142 (195)
T ss_pred             ccc--CCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHHccCcCCCeeeehHhhHHHHHHHC
Confidence            764  58999999998754 2  4567899999999999999999999999999999999999999999999999987 5


Q ss_pred             CCe-EecCCCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHccccccc
Q 027785          155 GAS-WIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGS  200 (219)
Q Consensus       155 g~~-~~~~~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~~~~~~  200 (219)
                      +.. +.+..   .++.||++|||+|+.++.++++++|+++.|+..++
T Consensus       143 p~~~~~~~~---~~v~dg~~~T~~g~~~~~d~al~li~~~~G~~~a~  186 (195)
T cd03138         143 PKVRLDPDR---VVVTDGNLITAGGAMAWADLALHLIERLAGPELAQ  186 (195)
T ss_pred             CCceeccCc---EEEeCCCEEEcccHHHHHHHHHHHHHHHhCHHHHH
Confidence            544 44434   48999999999999999999999999888885533

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=100.00  E-value=8.2e-33  Score=211.33  Aligned_cols=163  Identities=27%  Similarity=0.427  Sum_probs=140.3

Q ss_pred             EEEEecCCCCchhhHHHHHHHHhC-CCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEE
Q 027785           11 VLLLCGDYMEDYEAMVPFQALLAF-GVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGL   89 (219)
Q Consensus        11 v~il~~~g~~~~e~~~~~~~l~~a-g~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l   89 (219)
                      |+|+++|+|++.|+..++++|+++ ++++.+++++++                ++.++.|..+.++.++++.+..+||+|
T Consensus         1 ~~v~~~~~f~~~e~~~~~~~l~~~~~~~~~~~s~~~~----------------~v~ss~g~~i~~~~~~~~~~~~~~D~l   64 (170)
T cd03140           1 IAVFLTDEFADWEGAYLAALLNSYEGFEVRTVSPTGE----------------PVTSIGGLRVVPDYSLDDLPPEDYDLL   64 (170)
T ss_pred             CEEEeccchhhhHHHHHHHHhcccCCcEEEEEeCCCC----------------eeEecCCeEEccccchhHCCHhHccEE
Confidence            589999999999999999999997 799999999876                678899999999999988765689999


Q ss_pred             EEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCC-CHHHHHHC--CCeEecCCCcce
Q 027785           90 VIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPP-VKPVLIAA--GASWIEPETMAA  166 (219)
Q Consensus        90 iipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~-~~~~l~~~--g~~~~~~~~~~~  166 (219)
                      +||||..... ..++.+.+||+++++++++|+++|+|+++|+++|+|+||++|+||. ..+.++++  +.......   .
T Consensus        65 ~I~Gg~~~~~-~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~aGlL~g~~~Tt~~~~~~~~~~~~~~~~~~~~~~---~  140 (170)
T cd03140          65 ILPGGDSWDN-PEAPDLAGLVRQALKQGKPVAAICGATLALARAGLLNNRKHTSNSLDFLKAHAPYYGGAEYYDEP---Q  140 (170)
T ss_pred             EEcCCccccc-CCcHHHHHHHHHHHHcCCEEEEEChHHHHHHHCCCcCCCcccCChHHHHHHhccccCcccccccC---c
Confidence            9999976443 3678999999999999999999999999999999999999999985 45555542  44443333   3


Q ss_pred             EEEcCCeEeCCCCCCHHHHHHHHHHHHc
Q 027785          167 CVVDGNIITGATYEGHPEFIRLFLKALG  194 (219)
Q Consensus       167 ~v~dg~liT~~g~~s~~~~~l~li~~l~  194 (219)
                      +++|||+|||+|. ++.||++++++++.
T Consensus       141 ~v~dg~iiT~~g~-a~~d~al~~i~~l~  167 (170)
T cd03140         141 AVSDGNLITANGT-APVEFAAEILRALD  167 (170)
T ss_pred             EEEcCCEEECCCc-CHHHHHHHHHHHcC
Confidence            8999999999875 58999999999875

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>PRK11574 oxidative-stress-resistance chaperone; Provisional

Probab=100.00  E-value=2e-32  Score=213.82  Aligned_cols=186  Identities=22%  Similarity=0.359  Sum_probs=150.8

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      +|||+|+++|||++.|+..|+++|+++|+++.+++..++.             ..++.++.|..+.+|..+++++..+||
T Consensus         2 ~~~~~il~~~g~~~~e~~~p~~~l~~ag~~v~~~s~~~~~-------------~~~v~ss~G~~v~~d~~l~~~~~~~~D   68 (196)
T PRK11574          2 SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDG-------------NLEITCSRGVKLLADAPLVEVADGDFD   68 (196)
T ss_pred             CceEEEEeCCCcchhhHhHHHHHHHHCCCeEEEEEccCCC-------------CceEEcCCCCEEeCCCCHHHCCCCCCC
Confidence            5799999999999999999999999999999999976421             115778889999999999887667899


Q ss_pred             EEEEcCCCC-cccccCChHHHHHHHHHHhcCCeEEEEehhHHH-HHhCcccCCceEeeCCCCHHHHHHCC-CeEecCCCc
Q 027785           88 GLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI-LAAADVVKGRKCTAYPPVKPVLIAAG-ASWIEPETM  164 (219)
Q Consensus        88 ~liipGG~~-~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~-La~aGlL~g~~~t~~~~~~~~l~~~g-~~~~~~~~~  164 (219)
                      +|+||||.+ ...+..++.+.+||+++++++++|++||+|+++ |+.+|+|+|+++|.++...+.   ++ ..+.+..  
T Consensus        69 ~l~ipGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~~~gll~~~~~t~~~~~~~~---~p~~~~~~~~--  143 (196)
T PRK11574         69 VIVLPGGIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATVLVPHDLFPIGNMTGFPTLKDK---IPAEQWQDKR--  143 (196)
T ss_pred             EEEECCCCchhhhhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHHhCCccCCCeEeeCcChHHh---cccCcccCCC--
Confidence            999999974 444567788999999999999999999999984 677999999999988776543   34 3444433  


Q ss_pred             ceEEEcC--CeEeCCCCCCHHHHHHHHHHHHccccccc--cceEEEecCCchh
Q 027785          165 AACVVDG--NIITGATYEGHPEFIRLFLKALGGTITGS--DKRILFLCGVSFC  213 (219)
Q Consensus       165 ~~~v~dg--~liT~~g~~s~~~~~l~li~~l~~~~~~~--~~~~~~~~~~~~~  213 (219)
                        ++.|+  |+|||+|++++.||++++|+++.|+..++  ++.+++...+.-+
T Consensus       144 --~v~d~~~~iiT~~G~~a~~dlal~li~~~~G~~~a~~va~~~~~~~~~~~~  194 (196)
T PRK11574        144 --VVWDARVNLLTSQGPGTAIDFALKIIDLLVGREKAHEVASQLVMAAGIYNY  194 (196)
T ss_pred             --EEEeCCccEEeCCCcchHHHHHHHHHHHhcCHHHHHHHHhhhccCcccccc
Confidence              66665  99999999999999999999988886544  5555544444433

>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]

Probab=100.00  E-value=2.5e-32  Score=224.28  Aligned_cols=178  Identities=16%  Similarity=0.203  Sum_probs=154.4

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCC-------CeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccC
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFG-------VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDE   80 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~   80 (219)
                      +.+|+|+++|+|....+..+.+.|+.+|       |.+.+++.+++                ++.+++|+.|.+|..+++
T Consensus        10 ~~~~~~ll~p~f~l~~fa~~ve~lr~An~~~~~~~~~w~~~s~~g~----------------~V~ss~G~~i~~d~~~~~   73 (328)
T COG4977          10 PQRFGFLLLPNFSLMAFASAVEPLRAANRLAGRSLYVWSIVSADGG----------------PVRSSSGLSIAPDGGLEA   73 (328)
T ss_pred             ceEEEEEEeCCCchhhhhhhHHHHHHhhhhccccccceEEeecCCC----------------CcccCCCceEecCCcccc
Confidence            5689999999999999999999999886       45677887775                688999999999999997


Q ss_pred             CCCCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHH-CCCeEe
Q 027785           81 IDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-AGASWI  159 (219)
Q Consensus        81 ~~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~-~g~~~~  159 (219)
                      ..  ++|+++++||.++......+.+..||++.+++|..|+++|+|+++||++|||+||++|+||...+.|++ +|.+..
T Consensus        74 ~~--~~~~v~v~~g~~~~~~~~~~~l~~~Lr~~~~~G~~l~gictGaf~LA~aGLLdGrrattHW~~~~~f~e~FP~v~~  151 (328)
T COG4977          74 AP--PIDILPVCGGLGPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLAEAGLLDGRRATTHWEHAEDFQERFPDVRV  151 (328)
T ss_pred             cC--cceEEEEecCCCcccccchHHHHHHHHHHHhcCCeEEEehHhHHHHHHhcccCCCCeeeccccHHHHHHhCCCCCC
Confidence            64  599999999988765444588999999999999999999999999999999999999999999999987 787774


Q ss_pred             cCCCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHcccc-ccc-cceEEE
Q 027785          160 EPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTI-TGS-DKRILF  206 (219)
Q Consensus       160 ~~~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~~~-~~~-~~~~~~  206 (219)
                      ...   .|++||++|||+|.++++|++++||++..|.. +.+ ++..++
T Consensus       152 ~~~---lfviDg~~~T~aG~~a~iDl~L~lI~~~~G~~~a~~va~~lv~  197 (328)
T COG4977         152 TDR---LFVIDGDRITCAGGTAAIDLMLALIRRDFGAALANRVARQLVV  197 (328)
T ss_pred             CCc---eEEecCCEEEcCCchHHHHHHHHHHHHHhCHHHHHHHHHHhhh
Confidence            444   59999999999999999999999998777664 444 444444

>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]

Probab=100.00  E-value=7.5e-32  Score=206.55  Aligned_cols=174  Identities=39%  Similarity=0.627  Sum_probs=156.7

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      ++++.|+..++.++.|+..+.++|++.|.+|.+++++++.               ++.++.+..+.+|..+.+.-..+||
T Consensus         5 ~~~vlil~~~g~Ee~E~ivp~dVLrr~Gi~Vt~ag~~~~~---------------~vkcs~~v~~~~d~~l~D~~~~~yD   69 (247)
T KOG2764|consen    5 KKAVLILCADGMEEYEFIVPIDVLRRGGIDVTVAGPNKKE---------------GVKCSRGVHILPDNALFDVVDSKYD   69 (247)
T ss_pred             cccEEEEccCCcceeEEEEeHHHHHhcCceEEEecCCCCc---------------ccccccceEecccccchhhcccccc
Confidence            5689999999999999999999999999999999998764               5666777778888777665558999


Q ss_pred             EEEEcCC-CCcccccCChHHHHHHHHHHhcCCeEEEEehhH-HHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcc
Q 027785           88 GLVIPGG-RAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ-LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMA  165 (219)
Q Consensus        88 ~liipGG-~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~-~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~  165 (219)
                      +++|||| .|+..+...+.+.+.+++|.+.+++|++||+|+ .+|+.-|++.|+++|+||...+.+.+-|..|+++.   
T Consensus        70 viilPGG~~g~e~L~~~~~v~~lvK~q~~~gkLIaaICaap~~al~a~gl~~gkk~T~~ps~k~~L~~~gy~yve~~---  146 (247)
T KOG2764|consen   70 VIILPGGLPGAETLSECEKVVDLVKEQAESGKLIAAICAAPLTALAAHGLLGGKKCTAHPSVKPKLEEGGYKYVEPR---  146 (247)
T ss_pred             EEEecCCchhhhhhhhcHHHHHHHHHHHhcCCeEEEeecchHHHHhhccccccceeeeccchhhhHhhcCcEEecCC---
Confidence            9999999 788889999999999999999999999999999 56666778889999999999999998888898886   


Q ss_pred             eEEEcCCeEeCCCCCCHHHHHHHHHHHHccccccc
Q 027785          166 ACVVDGNIITGATYEGHPEFIRLFLKALGGTITGS  200 (219)
Q Consensus       166 ~~v~dg~liT~~g~~s~~~~~l~li~~l~~~~~~~  200 (219)
                       +|.|||++|++|+..+.+|++.|+|.|.|+....
T Consensus       147 -vv~dG~liTSrGpgT~~eFal~lvEqL~GKeka~  180 (247)
T KOG2764|consen  147 -VVKDGNLITSRGPGTAFEFALKLVEQLGGKEKAN  180 (247)
T ss_pred             -eEEeCcEEeccCCCchHHHHHHHHHHhcCchhhh
Confidence             8999999999999999999999999999997753

>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein

Probab=99.97  E-value=4.5e-31  Score=209.94  Aligned_cols=177  Identities=23%  Similarity=0.316  Sum_probs=140.2

Q ss_pred             CCCCchhhHHHHHHHHhCCCeEEEecCCCCC-CCCCCcccccCCCc-cee----ccccCCccccccCccCCCCCCccEEE
Q 027785           17 DYMEDYEAMVPFQALLAFGVSVDAACPGKKS-GDVCPTAVHQSTGH-QTY----SETRGHNFALNATFDEIDPTKYDGLV   90 (219)
Q Consensus        17 ~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~-~~~~~~~~~~~~~~-~~~----~~~~g~~i~~~~~~~~~~~~~~D~li   90 (219)
                      .|++..|+..|+++|+++|++|+++|++++. .++........... ..+    ..+.+..+.++..+++++..+||+|+
T Consensus        20 tG~~~~E~~~p~~~l~~aG~~VdiaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~dv~~~dYDav~   99 (231)
T cd03147          20 TGVFFSEALHPFNVFREAGFEVDFVSETGTFGFDDHSLDPDFLNGEDLEVFSNKDSDFWKKLKNIKKADEVNPDDYGIFF   99 (231)
T ss_pred             cccCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCccccccccCCHHHHHHHhcchHHHHHHHhccCChhHCCHhhCcEEE
Confidence            4889999999999999999999999997642 12211110000000 011    12345577888899999989999999


Q ss_pred             EcCCCCc-ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC-------cccCCceEeeCCCC---------------
Q 027785           91 IPGGRAP-EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA-------DVVKGRKCTAYPPV---------------  147 (219)
Q Consensus        91 ipGG~~~-~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a-------GlL~g~~~t~~~~~---------------  147 (219)
                      ||||.++ ..+..++.++++|+++++++|+|++||+|+.+|+.+       ++++||++|+|+..               
T Consensus       100 iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a~~~~~g~~ll~Gk~vT~~~~~ee~~~~~~~~~~~~~  179 (231)
T cd03147         100 VAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANLKDPKTGKPLIKGKTVTGFTDKGEEIMGVMEILKKRN  179 (231)
T ss_pred             ECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhhhcccCCCcccCCCEEEeeCcHHHHhhhhhhhhcccC
Confidence            9999875 458889999999999999999999999999999987       99999999999864               


Q ss_pred             ----HHHHHHCCCeEecCC--CcceEEEcCCeEeCCCCCCHHHHHHHHHHHH
Q 027785          148 ----KPVLIAAGASWIEPE--TMAACVVDGNIITGATYEGHPEFIRLFLKAL  193 (219)
Q Consensus       148 ----~~~l~~~g~~~~~~~--~~~~~v~dg~liT~~g~~s~~~~~l~li~~l  193 (219)
                          ++.+++.|+.|.+..  .+..+|+|||+||++++.++.++++.|++.|
T Consensus       180 ~~~~e~~l~~~Ga~~~~~~~~~~~~VvvDgnLITgq~p~sa~~~a~~iv~~l  231 (231)
T cd03147         180 LESIEDIAERAGANFIRPPGPWDDFTVVDGRIVTGSNPASATSTAEAAIKAL  231 (231)
T ss_pred             CccHHHHHHHcCCEEEccCCCCCCcEEEcCCEEeCCCcccHHHHHHHHHHhC
Confidence                445566789988642  1235889999999999999999999999875

Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.

>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein

Probab=99.97  E-value=4.8e-31  Score=209.26  Aligned_cols=177  Identities=28%  Similarity=0.465  Sum_probs=141.1

Q ss_pred             CCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCC--ccee--ccccCCccccccCccCCCCCCccEEEEc
Q 027785           17 DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTG--HQTY--SETRGHNFALNATFDEIDPTKYDGLVIP   92 (219)
Q Consensus        17 ~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~--~~~~--~~~~g~~i~~~~~~~~~~~~~~D~liip   92 (219)
                      +|+++.|+..|+++|.++|++|+++++.+++......++.....  +...  ....+..+.++..++++++.+||+|+||
T Consensus        18 ~G~~~~E~~~p~~~l~~aG~~V~~as~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dal~ip   97 (221)
T cd03141          18 TGLWLEELAHPYDVFTEAGYEVDFASPKGGKVPLDPRSLDAEDDDDASVFDNDEEFKKKLANTKKLSDVDPSDYDAIFIP   97 (221)
T ss_pred             CccCHHHHHHHHHHHHHCCCeEEEECCCCCCCCcCchhccccccCHHHHhhcCHHHHHHHHccCChhHCCHhHceEEEEC
Confidence            79999999999999999999999999987642111111110000  0000  1234567889999999988899999999


Q ss_pred             CCCCc-ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCc------ccCCceEeeCCCCH---------------HH
Q 027785           93 GGRAP-EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD------VVKGRKCTAYPPVK---------------PV  150 (219)
Q Consensus        93 GG~~~-~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aG------lL~g~~~t~~~~~~---------------~~  150 (219)
                      ||.++ ..+..++.+++||+++++++++|++||+|+++|+++|      +|+||++|+||...               +.
T Consensus        98 GG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~ag~~~~~~ll~gr~~T~~~~~~~~~~~~~~~~~~~~~~~  177 (221)
T cd03141          98 GGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNVKLSDGKSLVAGKTVTGFTNEEEEAAGLKKVVPFLLEDE  177 (221)
T ss_pred             CCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhccCcCCCeeeCCcEEeccCCHHHHhcCccCcCCcCHHHH
Confidence            99875 3467899999999999999999999999999999999      79999999998754               44


Q ss_pred             HHHCCCeEecCC-CcceEEEcCCeEeCCCCCCHHHHHHHHHHHH
Q 027785          151 LIAAGASWIEPE-TMAACVVDGNIITGATYEGHPEFIRLFLKAL  193 (219)
Q Consensus       151 l~~~g~~~~~~~-~~~~~v~dg~liT~~g~~s~~~~~l~li~~l  193 (219)
                      +++.|++|.+.. .+..+|+|+|+||++|+.++.+|++++|+.|
T Consensus       178 l~~~g~~~~~~~~~~~~vv~D~~lvT~~~p~s~~~~a~~~i~~l  221 (221)
T cd03141         178 LKELGANYVKAEPWAEFVVVDGRLITGQNPASAAAVAEALVKAL  221 (221)
T ss_pred             HHHcCCEeecCCCCCCCEEEeCCEeeCCCchhHHHHHHHHHHhC
Confidence            677788888643 1235899999999999999999999999864

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different

>PRK04155 chaperone protein HchA; Provisional

Probab=99.97  E-value=1.1e-30  Score=213.03  Aligned_cols=190  Identities=18%  Similarity=0.274  Sum_probs=146.6

Q ss_pred             CCCEEEEEec--------------CCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCc-ceeccccCCc
Q 027785            7 GKRSVLLLCG--------------DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGH-QTYSETRGHN   71 (219)
Q Consensus         7 ~~~kv~il~~--------------~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~   71 (219)
                      .+|||+|++.              .|+++.|+..|+++|+++|++|+++|+.+++.....++....+.. .......+..
T Consensus        48 ~~kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG~eVdiAS~~G~~~~~d~~s~~~~d~~v~~~~~~~~~~  127 (287)
T PRK04155         48 GGKKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAGFEFDVATLSGNPVKFEYWAMPHEDEAVMGFYEKYKSK  127 (287)
T ss_pred             CCCeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCCCEEEEEecCCCccccccccccccchhHHHHHHHhhhh
Confidence            3679999985              488999999999999999999999999876432222222211100 0000122333


Q ss_pred             cccccCccCC----C--CCCccEEEEcCCCCc-ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCc------ccCC
Q 027785           72 FALNATFDEI----D--PTKYDGLVIPGGRAP-EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD------VVKG  138 (219)
Q Consensus        72 i~~~~~~~~~----~--~~~~D~liipGG~~~-~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aG------lL~g  138 (219)
                      +..+..++++    .  +.+||+||||||+++ ..++.++.+.++|+++++++|+|++||||+++|..+|      +++|
T Consensus       128 l~~~~~l~~v~~~~~~~~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a~~~~g~~ll~G  207 (287)
T PRK04155        128 FKQPKKLADVVANLLAPDSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPAALLAAGVDHGDNPLNG  207 (287)
T ss_pred             ccCceeHHHhhhhhcCCcccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHcCCcCCCcccCC
Confidence            4444444333    2  579999999999875 5588999999999999999999999999999999999      9999


Q ss_pred             ceEeeCCCC-------------------HHHHHHCCCeEecCCCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHccc
Q 027785          139 RKCTAYPPV-------------------KPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGT  196 (219)
Q Consensus       139 ~~~t~~~~~-------------------~~~l~~~g~~~~~~~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~~  196 (219)
                      |++|+|+..                   ++.|++.|+.+++.+.+..+|+|||+||++|+.++.+|++.+++.|..+
T Consensus       208 kkvT~fp~~~e~~~~~~~~~~~~~~~~~e~~L~~~Ga~~~~~~~~~~VvvDg~LITGq~P~sa~~fa~~~~~~Ll~~  284 (287)
T PRK04155        208 YSICAFPDALDKQTPEIGYMPGHLTWLFGEELKKMGVNIVNDDITGRVHKDRKLLTGDSPLASNALGKLAAQELLAA  284 (287)
T ss_pred             CEEeeCCCHHHhhccccccccccccchHHHHHHHcCCEEEcCCCCCCEEEeCCEEeCCChhHHHHHHHHHHHHHHHH
Confidence            999998865                   5567778999998643345999999999999999999999999987654

>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]

Probab=99.97  E-value=1.1e-29  Score=197.09  Aligned_cols=176  Identities=40%  Similarity=0.707  Sum_probs=152.5

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceecccc-CCccccccCccCCCCCCc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR-GHNFALNATFDEIDPTKY   86 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~i~~~~~~~~~~~~~~   86 (219)
                      ++||+|++++||+..|+..|+++|+++|+.++++++.++.              ..+.++. +..+.++..++++++.+|
T Consensus         2 ~~~i~i~~~~g~e~~E~~~p~~~l~~ag~~v~~~~~~~~~--------------~~~~~~~g~~~~~~~~~~~~~~~~~y   67 (188)
T COG0693           2 MKKIAILLADGFEDLELIVPYDVLRRAGFEVDVASPEGKG--------------KSVTSKRGGLVVADDKAFDDADAADY   67 (188)
T ss_pred             CceeEEEecCcceehhHhHHHHHHHHCCCeEEEEecCCCc--------------ceeecccCcceEecccccccCCHhHC
Confidence            4689999999999999999999999999999999998640              0233333 456667778888877899


Q ss_pred             cEEEEcCC-CCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCc-ccCCceEeeCCCCHHHHHH----CCCeEec
Q 027785           87 DGLVIPGG-RAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD-VVKGRKCTAYPPVKPVLIA----AGASWIE  160 (219)
Q Consensus        87 D~liipGG-~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aG-lL~g~~~t~~~~~~~~l~~----~g~~~~~  160 (219)
                      |+|+|||| .+++....++.+++|++++++++|+|++||+|+++|+.+| +++||++|+++...+....    .|++|++
T Consensus        68 dal~ipGG~~~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~~ag~ll~g~~~t~~~~~~~~~~~~~~~~ga~~vd  147 (188)
T COG0693          68 DALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAAGLLLKGRKATAFPDIEEDVKNGDGKAGANYVD  147 (188)
T ss_pred             CEEEECCCccchhhccCcHHHHHHHHHHHHcCCEEEEEChhHHHHhccccccCCceEeecCchHHHHHhHHHhcCceEec
Confidence            99999999 7887777779999999999999999999999999999999 9999999999999888877    6899998


Q ss_pred             CCC-cceEEEcCC-eEeCCCCCCHHHHHHHHHHHHcccc
Q 027785          161 PET-MAACVVDGN-IITGATYEGHPEFIRLFLKALGGTI  197 (219)
Q Consensus       161 ~~~-~~~~v~dg~-liT~~g~~s~~~~~l~li~~l~~~~  197 (219)
                      ... ...++.||+ ++|+.++.++.+++..+++.+.+..
T Consensus       148 ~~~~~~~vv~dg~~lvt~~~p~~~~~~~~~~~~~l~~~~  186 (188)
T COG0693         148 APLWTDEVVVDGNALVTGRNPASAPAFALELLKALGGAE  186 (188)
T ss_pred             cccCcCCEEEECCeEEEcCCcccHHHHHHHHHHHHhccc
Confidence            831 012899999 9999999999999999999988764

>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31)

Probab=99.97  E-value=9.2e-30  Score=202.54  Aligned_cols=179  Identities=17%  Similarity=0.242  Sum_probs=140.6

Q ss_pred             ecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCc-ceeccccCCccccccCccCC------CCCCcc
Q 027785           15 CGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGH-QTYSETRGHNFALNATFDEI------DPTKYD   87 (219)
Q Consensus        15 ~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~i~~~~~~~~~------~~~~~D   87 (219)
                      +..||++.|+..|+++|+++|++++++|+.+++.....++....+.. .......+..+..+..++++      ++.+||
T Consensus        19 ~~tG~~~~El~~p~~~l~~aG~~V~~aS~~g~~~~~d~~s~~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~~~~~~~dYD   98 (232)
T cd03148          19 FSTGNHPVEMLLPLYHLHAAGFDFDVATLSGLPVKFEYWAMPHEDEAVMPFFEKHKSKLRNPKKLADVVASLNADDSEYA   98 (232)
T ss_pred             cCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCcCccCccccccccHHHHHHHHHHHHHhcCCCCHHHhhhhccCChhhce
Confidence            35899999999999999999999999999775321111221110000 00001234556777778776      457999


Q ss_pred             EEEEcCCCCcc-cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcc------cCCceEeeCCCCHH-----------
Q 027785           88 GLVIPGGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADV------VKGRKCTAYPPVKP-----------  149 (219)
Q Consensus        88 ~liipGG~~~~-~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGl------L~g~~~t~~~~~~~-----------  149 (219)
                      +||+|||+++. .++.++.+.++++++++++|+|++||||+++|..+++      ++||++|+|+..++           
T Consensus        99 av~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a~l~~g~~ll~Gk~vT~f~~~eE~~~~~~~~~~~  178 (232)
T cd03148          99 AVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAARHGGGKNPLEGYSVCVFPDSLDEGANIEIGYMP  178 (232)
T ss_pred             EEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhccCCCCCeeeCCcEEecCCCHHHHhhhhcccccc
Confidence            99999998764 5899999999999999999999999999999999998      99999999876543           


Q ss_pred             ---------HHHHCCCeEecCCCcceEEEcCCeEeCCCCCCHHHHHHHHHHHH
Q 027785          150 ---------VLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKAL  193 (219)
Q Consensus       150 ---------~l~~~g~~~~~~~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l  193 (219)
                               .|++.|++|...+....+|+||++||++++.|+..++.++++.|
T Consensus       179 ~~~pf~le~~L~~~Ga~~~~~~~~~~vv~Dg~LiTGqnP~Sa~~~a~~~~~~~  231 (232)
T cd03148         179 GHLTWLVGEELKKMGMNIINDDITGRVHKDRKLLTGDSPLASNALGKLAAQEM  231 (232)
T ss_pred             CcccccHHHHHHHcCCEEECCCCCcCEEEeCCEEeCCCcHhHHHHHHHHHHHh
Confidence                     45567889888743345999999999999999999999999865

Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.

>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity

Probab=99.96  E-value=1.2e-28  Score=184.06  Aligned_cols=141  Identities=39%  Similarity=0.721  Sum_probs=122.6

Q ss_pred             eEEEecCCCCCCCCCCcccccCCCcceeccccC---CccccccCccCCCCCCccEEEEcCCCC-cccccCC-hHHHHHHH
Q 027785           37 SVDAACPGKKSGDVCPTAVHQSTGHQTYSETRG---HNFALNATFDEIDPTKYDGLVIPGGRA-PEYLAMN-DSVIDLVR  111 (219)
Q Consensus        37 ~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~i~~~~~~~~~~~~~~D~liipGG~~-~~~~~~~-~~l~~~l~  111 (219)
                      +|+++++..+.               .+.++.|   ..+.++..++++++.+||+||||||.+ +..++.+ +.+.++|+
T Consensus         1 ~V~~vs~~~~~---------------~v~~~~g~~~~~v~~d~~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~   65 (147)
T PF01965_consen    1 KVDVVSPGDGK---------------EVTGSHGSFGIKVTPDKTLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLK   65 (147)
T ss_dssp             EEEEEESSSSS---------------EEEBTTSHHHHEEESSEEGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHH
T ss_pred             CEEEEECCCCC---------------eEEcCCCcCCEEEECCCcHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHH
Confidence            46677776542               6777888   999999999999999999999999987 5667745 99999999


Q ss_pred             HHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcceEEEcC-CeEeCCCCCCHHHHHHHHH
Q 027785          112 KFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDG-NIITGATYEGHPEFIRLFL  190 (219)
Q Consensus       112 ~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~~~v~dg-~liT~~g~~s~~~~~l~li  190 (219)
                      ++++++|+|++||+|+.+|+.+|+|+|+++|+|+...+.++..|+.|++...  .+++|+ |+||++|+.++.+|+++++
T Consensus        66 ~~~~~~k~iaaIC~g~~~L~~~gll~g~~~T~~~~~~~~~~~~g~~~~~~~~--~~vvD~~nlIT~~~~~~~~~fa~~iv  143 (147)
T PF01965_consen   66 EFYEAGKPIAAICHGPAVLAAAGLLKGKKVTSYPNDEEDLENAGANYVDQDD--PVVVDGGNLITGRGPGSAIEFALAIV  143 (147)
T ss_dssp             HHHHTT-EEEEETTCHHHHHHTTTTTTSEEC-SGGGHHHHHHTTTEEBSCSS--SEEEETTTEEEESSGGGHHHHHHHHH
T ss_pred             HHHHcCCeEEecCCCcchhhccCccCCceeecCccHHHHHHHCCCEEEecCC--CeEEECCeEEECCChhhHHHHHHHHH
Confidence            9999999999999999999999999999999999999988889999998432  388999 9999999999999999999


Q ss_pred             HHHc
Q 027785          191 KALG  194 (219)
Q Consensus       191 ~~l~  194 (219)
                      +.|+
T Consensus       144 e~L~  147 (147)
T PF01965_consen  144 EALG  147 (147)
T ss_dssp             HHHT
T ss_pred             HHcC
Confidence            9874

Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....

>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional

Probab=99.95  E-value=3.2e-27  Score=185.89  Aligned_cols=165  Identities=25%  Similarity=0.326  Sum_probs=127.6

Q ss_pred             CEEEEEec-----CCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccc-------c
Q 027785            9 RSVLLLCG-----DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALN-------A   76 (219)
Q Consensus         9 ~kv~il~~-----~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~-------~   76 (219)
                      +||+|++.     +|+++.|+..|+++|+++|++++++|++++.....    .+..+. .+....+..+..+       .
T Consensus         2 kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~   76 (217)
T PRK11780          2 KKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDIPQLHVI----NHLTGE-EMGETRNVLVESARIARGEIK   76 (217)
T ss_pred             CEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCCCccccc----cCcccc-ccccccceeeehhhhhccCCC
Confidence            58999998     99999999999999999999999999977531110    000000 1222223323222       5


Q ss_pred             CccCCCCCCccEEEEcCCCCc-----------ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeC-
Q 027785           77 TFDEIDPTKYDGLVIPGGRAP-----------EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAY-  144 (219)
Q Consensus        77 ~~~~~~~~~~D~liipGG~~~-----------~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~-  144 (219)
                      .++++++.+||+||||||.++           +.++.++.+++++++|++++|+|++||+|+++|+.+.. +||++|++ 
T Consensus        77 ~l~~v~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~~-~gr~~T~~~  155 (217)
T PRK11780         77 DLAEADAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKILG-AGVKLTIGN  155 (217)
T ss_pred             chhHCChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHhc-cCcEEEecC
Confidence            788888889999999999874           22355899999999999999999999999999998632 89999999 


Q ss_pred             -CCCHHHHHHCCCeEecCCCcceEEEc--CCeEeCCCCC
Q 027785          145 -PPVKPVLIAAGASWIEPETMAACVVD--GNIITGATYE  180 (219)
Q Consensus       145 -~~~~~~l~~~g~~~~~~~~~~~~v~d--g~liT~~g~~  180 (219)
                       +.....+++.|++|++.+.. .+|+|  +|+||+....
T Consensus       156 ~~~~~~~~~~aGa~~vd~~~~-~vvvD~~~~lvt~~~~~  193 (217)
T PRK11780        156 DEDTAAAIEKMGGEHVDCPVD-DIVVDEENKVVTTPAYM  193 (217)
T ss_pred             ChhhHHHHHHCCCEEEcCCCC-eEEEECCCCEEeCCccc
Confidence             88999999999999987432 25666  7899998743

>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1

Probab=99.94  E-value=3.7e-26  Score=178.83  Aligned_cols=172  Identities=25%  Similarity=0.330  Sum_probs=128.6

Q ss_pred             EEEEe-----cCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccc-------cCc
Q 027785           11 VLLLC-----GDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALN-------ATF   78 (219)
Q Consensus        11 v~il~-----~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~-------~~~   78 (219)
                      ++|++     ++||++.|+..|+++|+++|++++++|++++.....    .+..+. .+..+.+..+.++       .++
T Consensus         1 ~~~~~~~cg~~dg~E~~El~~p~~~L~raG~~V~~aS~~gg~~~~d----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l   75 (213)
T cd03133           1 VAVVLSGCGVYDGSEIHEAVLTLLALDRAGAEVQCFAPDIEQMHVV----NHLTGE-AEGESRNVLVESARIARGNIKDL   75 (213)
T ss_pred             CEEEEeCCcCCCCccHHHHHHHHHHHHHCCCEEEEEeCCCCccCcc----cccccc-ccccccceeeehhhhhhcCCCch
Confidence            35666     589999999999999999999999999976532110    000010 2222334444433       678


Q ss_pred             cCCCCCCccEEEEcCCCCc-ccc----------cCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCC--
Q 027785           79 DEIDPTKYDGLVIPGGRAP-EYL----------AMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYP--  145 (219)
Q Consensus        79 ~~~~~~~~D~liipGG~~~-~~~----------~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~--  145 (219)
                      +++++.+||+|+||||.++ ..+          +.++.++++++++++++|+|++||+|+++|+.++. +||++|+|+  
T Consensus        76 ~ev~~~dyDalviPGG~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~-kGr~vT~~~~~  154 (213)
T cd03133          76 AKLKAADFDALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILG-EGVEVTIGNDA  154 (213)
T ss_pred             HHCCHhHCCEEEECCCCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHhc-cCCeEEccCCH
Confidence            8888889999999999864 222          24789999999999999999999999999999766 999999999  


Q ss_pred             CCHHHHHHCCCeEecCCCcceEEEc--CCeEeCCCC---CCHHHHHHHH
Q 027785          146 PVKPVLIAAGASWIEPETMAACVVD--GNIITGATY---EGHPEFIRLF  189 (219)
Q Consensus       146 ~~~~~l~~~g~~~~~~~~~~~~v~d--g~liT~~g~---~s~~~~~l~l  189 (219)
                      ..++.+++.|+.|++.+.+ .+++|  ||+|||...   .+..+.++.|
T Consensus       155 ~~~~~l~~aGa~~~d~~~~-~vvvd~dg~lITs~~~~~~~~~~~~~~~~  202 (213)
T cd03133         155 GTAAAIEKMGAEHVNCPVE-EIVVDEKNKVVTTPAYMLADSIHEIADGI  202 (213)
T ss_pred             HHHHHHHHCCCEEEeCCCC-eEEEECCCCEEeCccccCCCCHHHHHHhH
Confidence            8889999999999976322 24444  899999875   3445555543

Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.

>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases

Probab=99.91  E-value=2.2e-23  Score=154.66  Aligned_cols=113  Identities=25%  Similarity=0.370  Sum_probs=102.9

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      ++||+|++++||+..|+..+.++|+.+|++++++|++++                ++.++.|..+.++.++++.+..+||
T Consensus         1 ~~~v~ill~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~----------------~v~s~~g~~i~~~~~l~~~~~~~~D   64 (142)
T cd03132           1 GRKVGILVADGVDAAELSALKAALKAAGANVKVVAPTLG----------------GVVDSDGKTLEVDQTYAGAPSVLFD   64 (142)
T ss_pred             CCEEEEEEcCCcCHHHHHHHHHHHHHCCCEEEEEecCcC----------------ceecCCCcEEecceeecCCChhhcC
Confidence            368999999999999999999999999999999999886                5778889999999999987767899


Q ss_pred             EEEEcCCCCcc-cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCccc
Q 027785           88 GLVIPGGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVV  136 (219)
Q Consensus        88 ~liipGG~~~~-~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL  136 (219)
                      +|+||||.+.. .+..++.+.+||+++++++++|+++|+|+++|+++|+|
T Consensus        65 ~liVpGg~~~~~~~~~~~~l~~~l~~~~~~~~~I~aic~G~~~La~aGll  114 (142)
T cd03132          65 AVVVPGGAEAAFALAPSGRALHFVTEAFKHGKPIGAVGEGSDLLEAAGIP  114 (142)
T ss_pred             EEEECCCccCHHHHccChHHHHHHHHHHhcCCeEEEcCchHHHHHHcCCC
Confidence            99999997643 34678999999999999999999999999999999996

Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C

>PRK11249 katE hydroperoxidase II; Provisional

Probab=99.75  E-value=9.5e-18  Score=150.94  Aligned_cols=114  Identities=23%  Similarity=0.276  Sum_probs=105.6

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      ++||+||+++|++..|+..+.++|..+|..+.+++++++                .+.++.|..+.+|.++.+.++..||
T Consensus       597 gRKIaILVaDG~d~~ev~~~~daL~~AGa~V~VVSp~~G----------------~V~~s~G~~I~aD~t~~~~~Sv~FD  660 (752)
T PRK11249        597 GRKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRMG----------------EVTADDGTVLPIAATFAGAPSLTFD  660 (752)
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEECCCC----------------eEECCCCCEEecceeeccCCccCCC
Confidence            789999999999999999999999999999999999876                6788889999999999998777899


Q ss_pred             EEEEcCCC-CcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccC
Q 027785           88 GLVIPGGR-APEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVK  137 (219)
Q Consensus        88 ~liipGG~-~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~  137 (219)
                      +|+||||. ++..+..++.+++||+++++++|+|+++|+|+.+|+++||.+
T Consensus       661 AVvVPGG~~~~~~L~~d~~al~fL~eaykHgK~IAAiCaG~~LLaaAGL~~  711 (752)
T PRK11249        661 AVIVPGGKANIADLADNGDARYYLLEAYKHLKPIALAGDARKLKAALKLPD  711 (752)
T ss_pred             EEEECCCchhHHHHhhCHHHHHHHHHHHHcCCEEEEeCccHHHHHhcCCCC
Confidence            99999996 556677899999999999999999999999999999999954

>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.46  E-value=1.2e-12  Score=95.75  Aligned_cols=174  Identities=18%  Similarity=0.208  Sum_probs=122.4

Q ss_pred             CEEEEEe-----cCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCC------cceeccccCCccccccC
Q 027785            9 RSVLLLC-----GDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTG------HQTYSETRGHNFALNAT   77 (219)
Q Consensus         9 ~kv~il~-----~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~------~~~~~~~~g~~i~~~~~   77 (219)
                      |||++++     |||.+..|-...+..+.+.|.++..+.|+..+.+.    +++.+|      ++....+..+.----..
T Consensus         2 Kkv~ViLSGCGV~DGaEIHEsVltllai~r~GA~~~cFAP~~~Q~hV----iNHlTGE~m~EtRNVLvEsARIaRG~i~~   77 (217)
T COG3155           2 KKVGVILSGCGVYDGAEIHESVLTLLAISRSGAQAVCFAPDKQQVHV----INHLTGEAMPETRNVLVESARIARGEIRP   77 (217)
T ss_pred             ceeEEEeecCcccchHHHHHHHHHHHHHHhcCceeEEecCCchhhhh----hhhccccccchhhhHHHHHHHHhhccccc
Confidence            6999998     68999999999999999999999999998764332    222222      22222232222222234


Q ss_pred             ccCCCCCCccEEEEcCCCCc-ccc----------cCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEee--C
Q 027785           78 FDEIDPTKYDGLVIPGGRAP-EYL----------AMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTA--Y  144 (219)
Q Consensus        78 ~~~~~~~~~D~liipGG~~~-~~~----------~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~--~  144 (219)
                      +...++.+||++++|||+|+ .++          .-++.+....+.+++.|||++.+|.++.+|..-- =.+.+.|.  .
T Consensus        78 l~~a~~e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~-g~~~~~TIGnD  156 (217)
T COG3155          78 LAQADAEELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIF-GFPLRLTIGND  156 (217)
T ss_pred             hhhcCHHhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHc-CCceeEEecCC
Confidence            66677889999999999985 222          3468999999999999999999999999988531 12334454  4


Q ss_pred             CCCHHHHHHCCCeEecCCCcceEEE-cCCeEeCCCCCCHHHHHHHHHH
Q 027785          145 PPVKPVLIAAGASWIEPETMAACVV-DGNIITGATYEGHPEFIRLFLK  191 (219)
Q Consensus       145 ~~~~~~l~~~g~~~~~~~~~~~~v~-dg~liT~~g~~s~~~~~l~li~  191 (219)
                      +...+.++++|+..++.+.+..++. +.+++|..    +.-++..|-+
T Consensus       157 ~dTa~a~~~mG~eHv~cPvd~iV~D~~~KvvtTP----AYMLA~~Iae  200 (217)
T COG3155         157 IDTAEALEEMGAEHVPCPVDDIVVDEDNKVVTTP----AYMLAQNIAE  200 (217)
T ss_pred             ccHHHHHHHhCcccCCCCccceeecCCCceecCh----HHHHHHHHHH
Confidence            4567888899999998887655543 56888853    3444544444

>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase

Probab=99.44  E-value=9.9e-13  Score=105.52  Aligned_cols=129  Identities=20%  Similarity=0.266  Sum_probs=88.4

Q ss_pred             EEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEE
Q 027785           11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLV   90 (219)
Q Consensus        11 v~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~li   90 (219)
                      |+|+.++|.+  .-....++|+++|+++.+++....                         +.     ...+..+||.|+
T Consensus         1 v~vl~~pG~n--~~~~~~~al~~aG~~v~~v~~~~~-------------------------~~-----~~~~l~~~d~li   48 (238)
T cd01740           1 VAVLRFPGSN--CDRDMAYAFELAGFEAEDVWHNDL-------------------------LA-----GRKDLDDYDGVV   48 (238)
T ss_pred             CEEEEcCCcC--CHHHHHHHHHHcCCCEEEEeccCC-------------------------cc-----ccCCHhhCCEEE
Confidence            5899999987  334678899999999998865421                         00     011235799999


Q ss_pred             EcCCCCc-cccc-----CChH-HHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCC
Q 027785           91 IPGGRAP-EYLA-----MNDS-VIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPET  163 (219)
Q Consensus        91 ipGG~~~-~~~~-----~~~~-l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~  163 (219)
                      ||||... ..+.     .... +.++|+++.+++++|++||.|.++|+++|+|.|+. +.++..+...+..+ .+++.  
T Consensus        49 ipGG~~~~d~l~~~~~~~~~~~~~~~l~~~~~~g~pvlGIC~G~QlL~~~gll~g~~-~~~~~~~~~~~~~~-~~v~~--  124 (238)
T cd01740          49 LPGGFSYGDYLRAGAIAAASPLLMEEVKEFAERGGLVLGICNGFQILVELGLLPGAL-IRNKGLKFICRWQN-RFVTL--  124 (238)
T ss_pred             ECCCCCcccccccccccccChhHHHHHHHHHhCCCeEEEECcHHHHHHHcCCCcccc-ccCCCCceeccccC-ceEEE--
Confidence            9999642 2221     1223 89999999999999999999999999999999966 66655432221111 22322  


Q ss_pred             cceEEEcCCeEeCC
Q 027785          164 MAACVVDGNIITGA  177 (219)
Q Consensus       164 ~~~~v~dg~liT~~  177 (219)
                        .++.+++++|+.
T Consensus       125 --~v~~~~si~t~~  136 (238)
T cd01740         125 --RVENNDSPFTKG  136 (238)
T ss_pred             --EEcCCCCceecC
Confidence              245667777765

Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site

>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=99.44  E-value=1.3e-12  Score=103.49  Aligned_cols=93  Identities=25%  Similarity=0.389  Sum_probs=73.3

Q ss_pred             EEEEEecCCCC-chhhHHHHHHHH-hCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785           10 SVLLLCGDYME-DYEAMVPFQALL-AFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus        10 kv~il~~~g~~-~~e~~~~~~~l~-~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      ||+|+.++|.+ +.|+   ..+|+ .+|+++..++....                                   +..+||
T Consensus         2 ~v~Vl~~~G~n~~~d~---~~a~~~~~G~~~~~v~~~~~-----------------------------------~l~~~D   43 (219)
T PRK03619          2 KVAVIVFPGSNCDRDM---ARALRDLLGAEPEYVWHKET-----------------------------------DLDGVD   43 (219)
T ss_pred             EEEEEecCCcChHHHH---HHHHHhcCCCeEEEEecCcC-----------------------------------CCCCCC
Confidence            89999999988 3333   77787 78988877754210                                   124799


Q ss_pred             EEEEcCCCCcc------cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCce
Q 027785           88 GLVIPGGRAPE------YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRK  140 (219)
Q Consensus        88 ~liipGG~~~~------~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~  140 (219)
                      +|+||||....      .....+.+.+||++++++++++++||+|.++|+++|||+|+-
T Consensus        44 ~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~~~~g~~ilgIC~G~qlLa~~GLL~g~l  102 (219)
T PRK03619         44 AVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFAEKGKPVLGICNGFQILTEAGLLPGAL  102 (219)
T ss_pred             EEEECCCCchhhhhccchhhhchHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCeE
Confidence            99999996421      123457899999999999999999999999999999999953

>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=99.41  E-value=2.2e-12  Score=104.32  Aligned_cols=99  Identities=22%  Similarity=0.318  Sum_probs=73.7

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      ++||+|++++|++..  ..+.++|+.+|+++.+++....                           .+  . ..+..+||
T Consensus         3 ~~kvaVl~~pG~n~d--~e~~~Al~~aG~~v~~v~~~~~---------------------------~~--~-~~~l~~~D   50 (261)
T PRK01175          3 SIRVAVLRMEGTNCE--DETVKAFRRLGVEPEYVHINDL---------------------------AA--E-RKSVSDYD   50 (261)
T ss_pred             CCEEEEEeCCCCCCH--HHHHHHHHHCCCcEEEEeeccc---------------------------cc--c-ccchhhCC
Confidence            458999999999833  3557999999999988865321                           00  0 01235799


Q ss_pred             EEEEcCCCCc-ccccCC--------hHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCC
Q 027785           88 GLVIPGGRAP-EYLAMN--------DSVIDLVRKFSNSGKTIASICHGQLILAAADVVKG  138 (219)
Q Consensus        88 ~liipGG~~~-~~~~~~--------~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g  138 (219)
                      +|+||||.+. ..+...        +.+.+.|+++.+++++|.+||.|.++|+++|+|.|
T Consensus        51 gLvipGGfs~gD~l~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~QlLa~~GlLpg  110 (261)
T PRK01175         51 CLVIPGGFSAGDYIRAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQVLVELGLLPG  110 (261)
T ss_pred             EEEECCCCCcccccccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHHCCCCCC
Confidence            9999999642 222211        23458899999999999999999999999999998

>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=99.32  E-value=8.6e-12  Score=96.71  Aligned_cols=93  Identities=27%  Similarity=0.374  Sum_probs=74.9

Q ss_pred             CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCC-Ccc
Q 027785            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT-KYD   87 (219)
Q Consensus         9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~-~~D   87 (219)
                      +||+|+.++|.+  .-...+.+|+.+|+++..+..+.                                   .... +||
T Consensus         3 ~kvaVi~fpGtN--~d~d~~~A~~~aG~~~~~V~~~d-----------------------------------~~~~~~~d   45 (231)
T COG0047           3 PKVAVLRFPGTN--CDYDMAAAFERAGFEAEDVWHSD-----------------------------------LLLGRDFD   45 (231)
T ss_pred             ceEEEEEcCCcC--chHHHHHHHHHcCCCceEEEeee-----------------------------------cccCCCcc
Confidence            599999999988  55666777889999888775432                                   1112 799


Q ss_pred             EEEEcCCCCccc------ccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCC
Q 027785           88 GLVIPGGRAPEY------LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKG  138 (219)
Q Consensus        88 ~liipGG~~~~~------~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g  138 (219)
                      +|++|||++..+      ...-..+++-++++.++++++.+||+|-++|.++|||.|
T Consensus        46 ~vv~pGGFSyGDyLr~Gaiaa~~~v~~~v~~~a~~g~~vLGICNGfQiL~e~gLlPG  102 (231)
T COG0047          46 GVVLPGGFSYGDYLRAGAIAAIAPVMDEVREFAEKGKPVLGICNGFQILSEAGLLPG  102 (231)
T ss_pred             EEEEcCCCCcccccCcchHHhhHHHHHHHHHHHHCCCeEEEEcchhHHHHHcCcCCc
Confidence            999999975322      223367899999999999999999999999999999999

>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I

Probab=99.30  E-value=4.4e-11  Score=95.36  Aligned_cols=93  Identities=26%  Similarity=0.413  Sum_probs=72.0

Q ss_pred             CEEEEEecCCCCc-hhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785            9 RSVLLLCGDYMED-YEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus         9 ~kv~il~~~g~~~-~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      +||+|+.++|.+. .|.   .+.|+.+|+++.++.....                              .     ..++|
T Consensus         1 ~~v~Vl~~~G~n~~~~~---~~al~~~G~~~~~i~~~~~------------------------------~-----l~~~d   42 (227)
T TIGR01737         1 MKVAVIRFPGTNCDRDT---VYALRLLGVDAEIVWYEDG------------------------------S-----LPDYD   42 (227)
T ss_pred             CeEEEEeCCCcCcHHHH---HHHHHHCCCeEEEEecCCC------------------------------C-----CCCCC
Confidence            3899999998863 344   5788889998888743210                              1     23699


Q ss_pred             EEEEcCCCCcc------cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCc
Q 027785           88 GLVIPGGRAPE------YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGR  139 (219)
Q Consensus        88 ~liipGG~~~~------~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~  139 (219)
                      +|+||||....      .......+.++|+++.+++++|.+||.|.++|+++|+|+|.
T Consensus        43 ~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~QlLa~~GlL~G~  100 (227)
T TIGR01737        43 GVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKGVPVLGICNGFQILVEAGLLPGA  100 (227)
T ss_pred             EEEECCCCcccccccccchhcchHHHHHHHHHHHcCCEEEEECHHHHHHHHcCCCCCc
Confidence            99999996421      12234678899999999999999999999999999999984

In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.

>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2

Probab=99.04  E-value=7e-10  Score=85.59  Aligned_cols=84  Identities=26%  Similarity=0.351  Sum_probs=67.3

Q ss_pred             EEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEE
Q 027785           10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGL   89 (219)
Q Consensus        10 kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l   89 (219)
                      ||+|+..+|    .+....+.|++.|.++.++++..                                  +  ..+||+|
T Consensus         1 ~igvl~~qg----~~~e~~~~l~~~g~~~~~v~~~~----------------------------------~--l~~~d~l   40 (184)
T TIGR03800         1 KIGVLALQG----AVREHARALEALGVEGVEVKRPE----------------------------------Q--LDEIDGL   40 (184)
T ss_pred             CEEEEEccC----CHHHHHHHHHHCCCEEEEECChH----------------------------------H--hccCCEE
Confidence            589999998    44557799999999888886521                                  1  2379999


Q ss_pred             EEcCCCCcc--cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           90 VIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        90 iipGG~~~~--~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      +||||.+..  .+..+..+.++|+++.++++++.+||.|..+|+++
T Consensus        41 iipGG~~~~~~~l~~~~~l~~~i~~~~~~g~pilGIC~G~qlL~~~   86 (184)
T TIGR03800        41 IIPGGESTTLSRLLDKYGMFEPLRNFILSGLPVFGTCAGLIMLAKE   86 (184)
T ss_pred             EECCCCHHHHHHHHHhccHHHHHHHHHHcCCcEEEECHHHHHHHhh
Confidence            999997532  23345678999999999999999999999999988

Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.

>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=99.04  E-value=3.4e-09  Score=73.39  Aligned_cols=91  Identities=33%  Similarity=0.578  Sum_probs=75.1

Q ss_pred             EEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEE
Q 027785           11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLV   90 (219)
Q Consensus        11 v~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~li   90 (219)
                      |++++.+++...++..+.+.|+.+++++++++....+                ...             .....+||+++
T Consensus         1 v~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----------------~~~-------------~~~~~~~d~li   51 (115)
T cd01653           1 VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGGP----------------VES-------------DVDLDDYDGLI   51 (115)
T ss_pred             CEEEecCCCchhhhHHHHHHHHHCCCeEEEEcCCCCc----------------eec-------------cCChhccCEEE
Confidence            5788999999999999999999999999999987642                100             12346899999


Q ss_pred             EcCCCCccc-ccCChHHHHHHHHHHhcCCeEEEEehhHHHH
Q 027785           91 IPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLIL  130 (219)
Q Consensus        91 ipGG~~~~~-~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~L  130 (219)
                      +|||..... ...++.+++|++++.+++++++++|.|++++
T Consensus        52 i~g~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~c~g~~~l   92 (115)
T cd01653          52 LPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQLL   92 (115)
T ss_pred             ECCCCCchhhhccCHHHHHHHHHHHHcCCEEEEECchhHhH
Confidence            999876432 2246899999999999999999999999998

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende

>PRK13527 glutamine amidotransferase subunit PdxT; Provisional

Probab=99.01  E-value=1.5e-09  Score=84.93  Aligned_cols=90  Identities=20%  Similarity=0.300  Sum_probs=72.3

Q ss_pred             EEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEE
Q 027785           10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGL   89 (219)
Q Consensus        10 kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l   89 (219)
                      ||+|++.+++....+..+...|+..|+++++.....                                .++  ..+||+|
T Consensus         2 ~i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~--------------------------------~~~--l~~~d~i   47 (200)
T PRK13527          2 KIGVLALQGDVEEHIDALKRALDELGIDGEVVEVRR--------------------------------PGD--LPDCDAL   47 (200)
T ss_pred             EEEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCC--------------------------------hHH--hccCCEE
Confidence            899999999998888899999999998777764421                                012  2369999


Q ss_pred             EEcCCCCcc--cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           90 VIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        90 iipGG~~~~--~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      +||||.+..  .......+.++|+++.++++++.+||.|.++|+.+
T Consensus        48 ii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilGIC~G~Qll~~~   93 (200)
T PRK13527         48 IIPGGESTTIGRLMKREGILDEIKEKIEEGLPILGTCAGLILLAKE   93 (200)
T ss_pred             EECCCcHHHHHHHHhhccHHHHHHHHHHCCCeEEEECHHHHHHHhh
Confidence            999997532  22344568999999999999999999999999987

>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A

Probab=98.98  E-value=1.1e-09  Score=88.55  Aligned_cols=99  Identities=26%  Similarity=0.348  Sum_probs=69.4

Q ss_pred             CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG   88 (219)
Q Consensus         9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~   88 (219)
                      .||+|+.++|.+  .-.....+|+.+|+++..+....-                         +     -.+.+..+||+
T Consensus         2 pkV~Vl~~pGtN--ce~e~~~A~~~aG~~~~~v~~~dl-------------------------~-----~~~~~l~~~~~   49 (259)
T PF13507_consen    2 PKVAVLRFPGTN--CERETAAAFENAGFEPEIVHINDL-------------------------L-----SGESDLDDFDG   49 (259)
T ss_dssp             -EEEEEE-TTEE--EHHHHHHHHHCTT-EEEEEECCHH-------------------------H-----TTS--GCC-SE
T ss_pred             CEEEEEECCCCC--CHHHHHHHHHHcCCCceEEEEEec-------------------------c-----cccCchhhCcE
Confidence            489999999988  556678889999999988754310                         0     00113458999


Q ss_pred             EEEcCCCCccc-c----------cCChHHHHHHHHHHhc-CCeEEEEehhHHHHHhCcccCCc
Q 027785           89 LVIPGGRAPEY-L----------AMNDSVIDLVRKFSNS-GKTIASICHGQLILAAADVVKGR  139 (219)
Q Consensus        89 liipGG~~~~~-~----------~~~~~l~~~l~~~~~~-~~~v~~ic~G~~~La~aGlL~g~  139 (219)
                      |+||||.+..+ +          ..++.+.+-|++|.++ ++++.+||+|.++|.++|||.|.
T Consensus        50 lvipGGFS~gD~l~sg~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGIcNGfQiL~~~Gllp~~  112 (259)
T PF13507_consen   50 LVIPGGFSYGDYLRSGAIAAARLLFNSPLMDAIREFLERPGGFVLGICNGFQILVELGLLPGG  112 (259)
T ss_dssp             EEE-EE-GGGGTTSTTHHHHHHHCCSCCCHHHHHHHHHCTT-EEEEECHHHHHHCCCCCSTT-
T ss_pred             EEECCccCccccchHHHHHHHHhhccHHHHHHHHHHHhcCCCeEEEEchHhHHHHHhCcCCCc
Confidence            99999975322 1          2245678899999999 99999999999999999999983

>PRK13526 glutamine amidotransferase subunit PdxT; Provisional

Probab=98.98  E-value=1.6e-09  Score=82.46  Aligned_cols=89  Identities=22%  Similarity=0.315  Sum_probs=66.7

Q ss_pred             CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG   88 (219)
Q Consensus         9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~   88 (219)
                      .||+|+..+|..    ..-...|++.|.++.++....                                  +  ..+||.
T Consensus         3 ~~igVLalqG~~----~Eh~~al~~lG~~v~~v~~~~----------------------------------~--l~~~D~   42 (179)
T PRK13526          3 QKVGVLAIQGGY----QKHADMFKSLGVEVKLVKFNN----------------------------------D--FDSIDR   42 (179)
T ss_pred             cEEEEEECCccH----HHHHHHHHHcCCcEEEECCHH----------------------------------H--HhCCCE
Confidence            589999999944    446778888888766654211                                  1  237999


Q ss_pred             EEEcCCCCcc--cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHh----CcccCC
Q 027785           89 LVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA----ADVVKG  138 (219)
Q Consensus        89 liipGG~~~~--~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~----aGlL~g  138 (219)
                      |++|||.+..  .+..+..+.+.|+++.+ ++++++||.|..+|++    -|+++|
T Consensus        43 LILPGG~~t~~~~ll~~~~l~~~Ik~~~~-~kpilGICaG~qlL~~~s~~Lg~idg   97 (179)
T PRK13526         43 LVIPGGESTTLLNLLNKHQIFDKLYNFCS-SKPVFGTCAGSIILSKGEGYLNLLDL   97 (179)
T ss_pred             EEECCChHHHHHHHhhhcCcHHHHHHHHc-CCcEEEEcHHHHHHHccCCCCCCccE
Confidence            9999996543  44455679999999885 7899999999999999    355555

>PRK13525 glutamine amidotransferase subunit PdxT; Provisional

Probab=98.83  E-value=2.2e-08  Score=77.63  Aligned_cols=85  Identities=24%  Similarity=0.382  Sum_probs=64.9

Q ss_pred             CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG   88 (219)
Q Consensus         9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~   88 (219)
                      +||+|+...|-    +......|+.+|.++..+++.                                  .+  ..+||.
T Consensus         2 m~~~i~~~~g~----~~~~~~~l~~~g~~~~~~~~~----------------------------------~~--l~~~dg   41 (189)
T PRK13525          2 MKIGVLALQGA----VREHLAALEALGAEAVEVRRP----------------------------------ED--LDEIDG   41 (189)
T ss_pred             CEEEEEEcccC----HHHHHHHHHHCCCEEEEeCCh----------------------------------hH--hccCCE
Confidence            48999998873    344567788899888777431                                  11  247999


Q ss_pred             EEEcCCCCcc--cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           89 LVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        89 liipGG~~~~--~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      |++|||....  ....+..+.+++++++++++||.+||.|.++|+.+
T Consensus        42 iii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~   88 (189)
T PRK13525         42 LILPGGESTTMGKLLRDFGLLEPLREFIASGLPVFGTCAGMILLAKE   88 (189)
T ss_pred             EEECCCChHHHHHHHHhccHHHHHHHHHHCCCeEEEECHHHHHHHhh
Confidence            9999997532  23345567899999999999999999999999974

>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=98.82  E-value=3.3e-08  Score=65.38  Aligned_cols=91  Identities=32%  Similarity=0.569  Sum_probs=72.1

Q ss_pred             EEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEE
Q 027785           11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLV   90 (219)
Q Consensus        11 v~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~li   90 (219)
                      |+++..++....++..+.+.+++.++.+.+++....+                ...             .....++|+++
T Consensus         1 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~-------------~~~~~~~~~li   51 (92)
T cd03128           1 VAVLLFGGSEELELASPLDALREAGAEVDVVSPDGGP----------------VES-------------DVDLDDYDGLI   51 (92)
T ss_pred             CEEEecCCcEEEeeecHHHHHHhCCCEEEEEeCCCCc----------------ccc-------------cCCcccCCEEE
Confidence            4678888888888999999999999999999887642                000             12345899999


Q ss_pred             EcCCCCccc-ccCChHHHHHHHHHHhcCCeEEEEehhHHHH
Q 027785           91 IPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLIL  130 (219)
Q Consensus        91 ipGG~~~~~-~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~L  130 (219)
                      +|||..... ...+..+.+|++++++++++++++|.|++++
T Consensus        52 i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~   92 (92)
T cd03128          52 LPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQLL   92 (92)
T ss_pred             ECCCCcchhhhccCHHHHHHHHHHHHcCCEEEEEecccccC
Confidence            999976432 2246899999999999999999999998753

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin

>PRK07053 glutamine amidotransferase; Provisional

Probab=98.69  E-value=2.8e-07  Score=73.75  Aligned_cols=94  Identities=23%  Similarity=0.171  Sum_probs=70.9

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      +++|.|+....++  .+..+.+.|+..|.+++++....+.                            ....  +..+||
T Consensus         2 m~~ilviqh~~~e--~~g~i~~~L~~~g~~~~v~~~~~~~----------------------------~~~~--~~~~~d   49 (234)
T PRK07053          2 MKTAVAIRHVAFE--DLGSFEQVLGARGYRVRYVDVGVDD----------------------------LETL--DALEPD   49 (234)
T ss_pred             CceEEEEECCCCC--CChHHHHHHHHCCCeEEEEecCCCc----------------------------cCCC--CccCCC
Confidence            4689999877666  6667899999999999888664321                            0011  124799


Q ss_pred             EEEEcCCCC-ccc---ccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           88 GLVIPGGRA-PEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        88 ~liipGG~~-~~~---~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      .|||+||.. +..   .+.-..+.++|+++.+.++|+.+||.|.++|+.+
T Consensus        50 ~lii~Ggp~~~~d~~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~a   99 (234)
T PRK07053         50 LLVVLGGPIGVYDDELYPFLAPEIALLRQRLAAGLPTLGICLGAQLIARA   99 (234)
T ss_pred             EEEECCCCCCCCCCCcCCcHHHHHHHHHHHHHCCCCEEEECccHHHHHHH
Confidence            999999863 321   2233578899999999999999999999999987

>PRK08250 glutamine amidotransferase; Provisional

Probab=98.68  E-value=3.2e-07  Score=73.51  Aligned_cols=93  Identities=15%  Similarity=0.217  Sum_probs=67.6

Q ss_pred             CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG   88 (219)
Q Consensus         9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~   88 (219)
                      +||+|+....++..+  ...+.++.+|+++++.....+                       ..      +.. +..+||+
T Consensus         1 m~i~vi~h~~~e~~g--~~~~~~~~~g~~~~~~~~~~g-----------------------~~------~p~-~~~~~d~   48 (235)
T PRK08250          1 MRVHFIIHESFEAPG--AYLKWAENRGYDISYSRVYAG-----------------------EA------LPE-NADGFDL   48 (235)
T ss_pred             CeEEEEecCCCCCch--HHHHHHHHCCCeEEEEEccCC-----------------------CC------CCC-CccccCE
Confidence            379999999999554  456777889988888654321                       11      111 2347999


Q ss_pred             EEEcCCCCc-cc-ccCC-----hHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           89 LVIPGGRAP-EY-LAMN-----DSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        89 liipGG~~~-~~-~~~~-----~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      +||.||... .. ....     ....+||+++.++++|+.+||.|.++|+.+
T Consensus        49 vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~a  100 (235)
T PRK08250         49 LIVMGGPQSPRTTREECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQLIGEA  100 (235)
T ss_pred             EEECCCCCChhhccccccccchHHHHHHHHHHHHcCCCEEEEChhHHHHHHH
Confidence            999999642 21 1122     366899999999999999999999999987

>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex

Probab=98.65  E-value=9.7e-08  Score=76.53  Aligned_cols=85  Identities=26%  Similarity=0.396  Sum_probs=65.8

Q ss_pred             CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG   88 (219)
Q Consensus         9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~   88 (219)
                      +||+||..+|    .+......|+++|.++.+++..                                  +++  .++|.
T Consensus         2 m~igVLa~qG----~~~e~~~aL~~lG~ev~~v~~~----------------------------------~~L--~~~Dg   41 (248)
T PLN02832          2 MAIGVLALQG----SFNEHIAALRRLGVEAVEVRKP----------------------------------EQL--EGVSG   41 (248)
T ss_pred             cEEEEEeCCC----chHHHHHHHHHCCCcEEEeCCH----------------------------------HHh--ccCCE
Confidence            4899999999    4455578888899887776542                                  122  36899


Q ss_pred             EEEcCCCCc--ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           89 LVIPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        89 liipGG~~~--~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ||+|||...  ..+.....+.+.|+++.++++|+.++|.|.++|++.
T Consensus        42 LILPGGfs~~~~~L~~~~gl~~~I~~~v~~g~PvLGiC~GmqlLa~~   88 (248)
T PLN02832         42 LIIPGGESTTMAKLAERHNLFPALREFVKSGKPVWGTCAGLIFLAER   88 (248)
T ss_pred             EEeCCCHHHHHHHHHhhcchHHHHHHHHHcCCCEEEEChhHHHHHHH
Confidence            999998742  234444468889999989999999999999999876

>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase

Probab=98.63  E-value=2.7e-07  Score=72.09  Aligned_cols=77  Identities=30%  Similarity=0.419  Sum_probs=59.5

Q ss_pred             hHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCc---ccc
Q 027785           24 AMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAP---EYL  100 (219)
Q Consensus        24 ~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~---~~~  100 (219)
                      +..-.+.|+++|.++.++++..+                                +++  .++|+|++|||...   ..+
T Consensus        13 y~e~~~~l~~~G~~v~~~s~~~~--------------------------------~~l--~~~D~lilPGG~~~~~~~~L   58 (198)
T cd03130          13 YPENLELLEAAGAELVPFSPLKD--------------------------------EEL--PDADGLYLGGGYPELFAEEL   58 (198)
T ss_pred             cHHHHHHHHHCCCEEEEECCCCC--------------------------------CCC--CCCCEEEECCCchHHHHHHH
Confidence            44556788889999988876321                                112  24999999998632   345


Q ss_pred             cCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCc
Q 027785          101 AMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD  134 (219)
Q Consensus       101 ~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aG  134 (219)
                      ..+..+.+.|+++.+++++|.+||.|.++|++..
T Consensus        59 ~~~~~~~~~i~~~~~~g~pilgICgG~qlL~~~~   92 (198)
T cd03130          59 SANQSMRESIRAFAESGGPIYAECGGLMYLGESL   92 (198)
T ss_pred             HhhHHHHHHHHHHHHcCCCEEEEcccHHHHHHHh
Confidence            5667899999999999999999999999999864

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.

>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=98.61  E-value=1.7e-07  Score=73.33  Aligned_cols=85  Identities=22%  Similarity=0.255  Sum_probs=64.5

Q ss_pred             EEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEE
Q 027785           10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGL   89 (219)
Q Consensus        10 kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l   89 (219)
                      ||+|+-+.+-   .+....+.|+.+|+++.+++..                                  .+  ..+||++
T Consensus         2 ~~~v~~~~~~---~~~~~~~~l~~~G~~~~~~~~~----------------------------------~~--~~~~d~i   42 (200)
T PRK13143          2 MIVIIDYGVG---NLRSVSKALERAGAEVVITSDP----------------------------------EE--ILDADGI   42 (200)
T ss_pred             eEEEEECCCc---cHHHHHHHHHHCCCeEEEECCH----------------------------------HH--HccCCEE
Confidence            7888876633   4577788999999988877421                                  11  1379999


Q ss_pred             EEcCCCCcc-cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           90 VIPGGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        90 iipGG~~~~-~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ++|||.... .+...+.+.++|+++.++++|+.+||.|.++|+++
T Consensus        43 ii~G~~~~~~~~~~~~~~~~~i~~~~~~~~PilgIC~G~q~l~~~   87 (200)
T PRK13143         43 VLPGVGAFGAAMENLSPLRDVILEAARSGKPFLGICLGMQLLFES   87 (200)
T ss_pred             EECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhh
Confidence            999864332 23445678999999999999999999999999985

>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ)

Probab=98.56  E-value=2.9e-07  Score=71.66  Aligned_cols=86  Identities=15%  Similarity=0.206  Sum_probs=64.7

Q ss_pred             EEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEE
Q 027785           11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLV   90 (219)
Q Consensus        11 v~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~li   90 (219)
                      |+++.++...  .+..+...+...|+++.++++..                                  +  +.++|+|+
T Consensus         1 ~~~~~y~~~g--N~~~l~~~~~~~G~~~~~~~~~~----------------------------------~--~~~~d~li   42 (194)
T cd01750           1 IAVIRYPDIS--NFTDLDPLAREPGVDVRYVEVPE----------------------------------G--LGDADLII   42 (194)
T ss_pred             CEeecCCCcc--CHHHHHHHHhcCCceEEEEeCCC----------------------------------C--CCCCCEEE
Confidence            4677776544  56677777888899988887642                                  1  24789999


Q ss_pred             EcCCCCc-cccc--CChHHHHHHHHHHhcCCeEEEEehhHHHHHhCc
Q 027785           91 IPGGRAP-EYLA--MNDSVIDLVRKFSNSGKTIASICHGQLILAAAD  134 (219)
Q Consensus        91 ipGG~~~-~~~~--~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aG  134 (219)
                      +|||... ..+.  .+..+.+.|+++.++++||.+||.|.++|++.-
T Consensus        43 lpGg~~~~~~~~~~~~~~~~~~i~~~~~~g~pvlgiC~G~qlL~~~~   89 (194)
T cd01750          43 LPGSKDTIQDLAWLRKRGLAEAIKNYARAGGPVLGICGGYQMLGKYI   89 (194)
T ss_pred             ECCCcchHHHHHHHHHcCHHHHHHHHHHCCCcEEEECHHHHHhhhhc
Confidence            9999742 2221  244688999999999999999999999999874

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.

>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II

Probab=98.53  E-value=5.4e-07  Score=86.22  Aligned_cols=107  Identities=17%  Similarity=0.171  Sum_probs=77.5

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCC--CCCC
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEI--DPTK   85 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~--~~~~   85 (219)
                      ..||+|+.++|.+  .-.....+|+.+|+++..+....-.                    .+ .+  ..+++++  +..+
T Consensus       977 kpkvaIl~~pGtN--ce~d~a~Af~~aG~~~~~v~~~dl~--------------------~~-~i--~~s~~~~~~~l~~ 1031 (1239)
T TIGR01857       977 KPRVVIPVFPGTN--SEYDSAKAFEKEGAEVNLVIFRNLN--------------------EE-AL--VESVETMVDEIDK 1031 (1239)
T ss_pred             CCeEEEEECCCCC--CHHHHHHHHHHcCCceEEEEEecCc--------------------cc-cc--ccchhhhhccccc
Confidence            4699999999988  4456677788899988777543210                    00 00  0112111  2358


Q ss_pred             ccEEEEcCCCCccc-----------ccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCc
Q 027785           86 YDGLVIPGGRAPEY-----------LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGR  139 (219)
Q Consensus        86 ~D~liipGG~~~~~-----------~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~  139 (219)
                      ||+|++|||++..+           ...++.+.+-+++|+++++++.+||+|-++|.+.|||.+.
T Consensus      1032 ~~~l~~pGGFSyGD~l~~~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~lGLlP~~ 1096 (1239)
T TIGR01857      1032 SQILMLPGGFSAGDEPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQALVKSGLLPYG 1096 (1239)
T ss_pred             CcEEEEcCccCcccccchhHHHHHHHhhChHHHHHHHHHHhCCCcEEEechHHHHHHHcCCCcCc
Confidence            99999999975321           2345788999999999999999999999999999999863

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.

>PRK06490 glutamine amidotransferase; Provisional

Probab=98.48  E-value=1.9e-06  Score=69.29  Aligned_cols=94  Identities=24%  Similarity=0.213  Sum_probs=69.8

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      ++||.||...+++  ....+.+.|+..|.+++++.+..+.                       .+ +    ++  ..+||
T Consensus         7 ~~~vlvi~h~~~~--~~g~l~~~l~~~g~~~~v~~~~~~~-----------------------~~-p----~~--l~~~d   54 (239)
T PRK06490          7 KRPVLIVLHQERS--TPGRVGQLLQERGYPLDIRRPRLGD-----------------------PL-P----DT--LEDHA   54 (239)
T ss_pred             CceEEEEecCCCC--CChHHHHHHHHCCCceEEEeccCCC-----------------------CC-C----Cc--ccccC
Confidence            4689999977777  5666789999999999887654220                       00 1    12  24799


Q ss_pred             EEEEcCCCCc-cc-ccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           88 GLVIPGGRAP-EY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        88 ~liipGG~~~-~~-~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      .++|.||... .. ......+.+||+++.+.++|+.+||-|.++|+.+
T Consensus        55 gvii~Ggp~~~~d~~~wi~~~~~~i~~~~~~~~PvLGIC~G~Qlla~a  102 (239)
T PRK06490         55 GAVIFGGPMSANDPDDFIRREIDWISVPLKENKPFLGICLGAQMLARH  102 (239)
T ss_pred             EEEEECCCCCCCCCchHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHH
Confidence            9999999753 21 1122457899999999999999999999999987

>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis

Probab=98.48  E-value=3.7e-07  Score=70.42  Aligned_cols=83  Identities=28%  Similarity=0.417  Sum_probs=63.0

Q ss_pred             EEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEE
Q 027785           11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLV   90 (219)
Q Consensus        11 v~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~li   90 (219)
                      |+|++.+|...    ...+.|++.|.++..+++..                                  +  ..++|.++
T Consensus         1 igvl~~qg~~~----e~~~~l~~~g~~v~~v~~~~----------------------------------~--l~~~dgii   40 (183)
T cd01749           1 IGVLALQGDFR----EHIRALERLGVEVIEVRTPE----------------------------------D--LEGIDGLI   40 (183)
T ss_pred             CEEEEecCCcH----HHHHHHHHCCCeEEEECCHH----------------------------------H--hccCCEEE
Confidence            57788877553    33388999999888886521                                  1  24799999


Q ss_pred             EcCCCCc--ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           91 IPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        91 ipGG~~~--~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      +|||...  ........+.++|+++.++++++.++|.|..+|+.+
T Consensus        41 i~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~PvlGiC~G~qlL~~~   85 (183)
T cd01749          41 IPGGESTTIGKLLRRTGLLDPLREFIRAGKPVFGTCAGLILLAKE   85 (183)
T ss_pred             ECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEEEECHHHHHHHHH
Confidence            9998742  112344567899999999999999999999999976

Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.

>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional

Probab=98.47  E-value=1.4e-06  Score=83.93  Aligned_cols=101  Identities=18%  Similarity=0.251  Sum_probs=76.6

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      ..||+|+.++|.+  .-.....+|..+|+++..+....                          +.    -......+|+
T Consensus      1037 ~pkVaVl~~pGtN--~~~e~~~Af~~aGf~~~~V~~~d--------------------------l~----~~~~~L~~~~ 1084 (1307)
T PLN03206       1037 KPKVAIIREEGSN--GDREMAAAFYAAGFEPWDVTMSD--------------------------LL----NGRISLDDFR 1084 (1307)
T ss_pred             CCeEEEEECCCCC--CHHHHHHHHHHcCCceEEEEeee--------------------------cc----ccccccccee
Confidence            4699999999998  55666778889999887765431                          00    0011235799


Q ss_pred             EEEEcCCCCcc-----------cccCChHHHHHHHHHHh-cCCeEEEEehhHHHHHhCcccCCce
Q 027785           88 GLVIPGGRAPE-----------YLAMNDSVIDLVRKFSN-SGKTIASICHGQLILAAADVVKGRK  140 (219)
Q Consensus        88 ~liipGG~~~~-----------~~~~~~~l~~~l~~~~~-~~~~v~~ic~G~~~La~aGlL~g~~  140 (219)
                      .|++|||++..           .+..++.+.+-+++|++ .++++.+||+|-++|.+.|||.|-.
T Consensus      1085 glv~pGGFSyGD~l~sg~~wa~~i~~n~~~~~~~~~f~~~~d~~~LGICNGfQiL~~lgllPg~~ 1149 (1307)
T PLN03206       1085 GIVFVGGFSYADVLDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVCNGCQLMALLGWVPGPQ 1149 (1307)
T ss_pred             EEEEcCcCCCccccchHHHHHHHHHhChHHHHHHHHHHhCCCceEEEEcHHHHHHHHcCCCCCCc
Confidence            99999997421           23456788999999995 5999999999999999999998753

>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=98.43  E-value=2.2e-06  Score=66.28  Aligned_cols=91  Identities=27%  Similarity=0.368  Sum_probs=65.4

Q ss_pred             EEEEEecCCCCchhhHHHHHHHHhCC---CeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCc
Q 027785           10 SVLLLCGDYMEDYEAMVPFQALLAFG---VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKY   86 (219)
Q Consensus        10 kv~il~~~g~~~~e~~~~~~~l~~ag---~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~   86 (219)
                      ||+|+..+....  .....+.|++++   ++++++......                            . ..+  ..+|
T Consensus         1 ~i~il~~~~~~~--~~~~~~~l~~~g~~~~~~~~~~~~~~~----------------------------~-~~~--~~~~   47 (188)
T cd01741           1 RILILQHDTPEG--PGLFEDLLREAGAETIEIDVVDVYAGE----------------------------L-LPD--LDDY   47 (188)
T ss_pred             CEEEEECCCCCC--cchHHHHHHhcCCCCceEEEEecCCCC----------------------------C-CCC--cccC
Confidence            477777765543  667778888887   566666544320                            0 122  3589


Q ss_pred             cEEEEcCCCCcc---cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           87 DGLVIPGGRAPE---YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        87 D~liipGG~~~~---~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      |.|+++||....   .....+.+.++|+++.++++++.+||.|.++|+.+
T Consensus        48 dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pilgiC~G~q~l~~~   97 (188)
T cd01741          48 DGLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGHQLLARA   97 (188)
T ss_pred             CEEEECCCCccCCccCChHHHHHHHHHHHHHHCCCCEEEECccHHHHHHH
Confidence            999999997532   12223678999999999999999999999999976

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form

Probab=98.38  E-value=2.2e-06  Score=83.08  Aligned_cols=100  Identities=15%  Similarity=0.171  Sum_probs=75.7

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      +.||+|+.++|++  .-.....+|+.+|+++..+....-                              .-...+..+|+
T Consensus      1055 ~p~vail~~pG~N--~~~e~~~Af~~aGf~~~~v~~~dl------------------------------~~~~~~l~~~~ 1102 (1310)
T TIGR01735      1055 RPKVAILREQGVN--GDREMAAAFDRAGFEAWDVHMSDL------------------------------LAGRVHLDEFR 1102 (1310)
T ss_pred             CceEEEEECCCCC--CHHHHHHHHHHhCCCcEEEEEecc------------------------------ccCCcchhhee
Confidence            4689999999998  445566688899998777654320                              00111235799


Q ss_pred             EEEEcCCCCcc-----------cccCChHHHHHHHHHH-hcCCeEEEEehhHHHHH-hCcccCCc
Q 027785           88 GLVIPGGRAPE-----------YLAMNDSVIDLVRKFS-NSGKTIASICHGQLILA-AADVVKGR  139 (219)
Q Consensus        88 ~liipGG~~~~-----------~~~~~~~l~~~l~~~~-~~~~~v~~ic~G~~~La-~aGlL~g~  139 (219)
                      .|++|||++..           .+..++.+.+-+++|+ ++++++.+||+|.++|. .+|||.|.
T Consensus      1103 ~lv~~GGFSygD~lgsg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~~~gllp~~ 1167 (1310)
T TIGR01735      1103 GLAACGGFSYGDVLGAGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVCNGCQMLSNLLEWIPGT 1167 (1310)
T ss_pred             EEEEcCCCCCccchhHHHHHHHHHHhChHHHHHHHHHHhCCCceEEEecHHHHHHHHHhCcCCCC
Confidence            99999996421           1345678899999999 78999999999999999 99999874

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.

>PRK01077 cobyrinic acid a,c-diamide synthase; Validated

Probab=98.38  E-value=3e-06  Score=74.29  Aligned_cols=90  Identities=22%  Similarity=0.236  Sum_probs=68.4

Q ss_pred             CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG   88 (219)
Q Consensus         9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~   88 (219)
                      .||+|.-.+-|+. -+..-.+.|+..|.++..+++-..                             .     +.+++|+
T Consensus       246 ~~iava~d~af~f-~y~e~~~~L~~~g~~~~~~~~~~~-----------------------------~-----~l~~~D~  290 (451)
T PRK01077        246 VRIAVARDAAFNF-YYPENLELLRAAGAELVFFSPLAD-----------------------------E-----ALPDCDG  290 (451)
T ss_pred             ceEEEEecCcccc-cHHHHHHHHHHCCCEEEEeCCcCC-----------------------------C-----CCCCCCE
Confidence            4899998775443 233345778888999988876321                             0     1237999


Q ss_pred             EEEcCCCC---cccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           89 LVIPGGRA---PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        89 liipGG~~---~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      |++|||..   ...+..+..+.+.|+++.++|++|.++|.|.++|++.
T Consensus       291 lilpGG~~~~~~~~l~~~~~~~~~i~~~~~~g~~i~aiCgG~~~L~~~  338 (451)
T PRK01077        291 LYLGGGYPELFAAELAANTSMRASIRAAAAAGKPIYAECGGLMYLGES  338 (451)
T ss_pred             EEeCCCchhhHHHHHhhCchhHHHHHHHHHcCCCEEEEcHHHHHHHhh
Confidence            99999963   2345667789999999999999999999999999975

>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional

Probab=98.35  E-value=3.7e-06  Score=81.67  Aligned_cols=99  Identities=15%  Similarity=0.217  Sum_probs=74.6

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      +.||+|+.++|.+  .-.....+|+.+|+++..+....-                          ...    .....+|+
T Consensus      1035 ~pkv~il~~pG~N--~~~e~~~Af~~aG~~~~~v~~~dl--------------------------~~~----~~~l~~~~ 1082 (1290)
T PRK05297       1035 RPKVAILREQGVN--SHVEMAAAFDRAGFDAIDVHMSDL--------------------------LAG----RVTLEDFK 1082 (1290)
T ss_pred             CCeEEEEECCCCC--CHHHHHHHHHHcCCCeEEEEeecC--------------------------cCC----CCChhhCc
Confidence            4599999999998  456667788899998877654320                          000    01235899


Q ss_pred             EEEEcCCCCcc-----------cccCChHHHHHHHHHH-hcCCeEEEEehhHHHHHhCc-ccCC
Q 027785           88 GLVIPGGRAPE-----------YLAMNDSVIDLVRKFS-NSGKTIASICHGQLILAAAD-VVKG  138 (219)
Q Consensus        88 ~liipGG~~~~-----------~~~~~~~l~~~l~~~~-~~~~~v~~ic~G~~~La~aG-lL~g  138 (219)
                      .|++|||++..           .+..++.+.+-+++|+ ++++++.+||+|.++|.+.| ++.|
T Consensus      1083 ~l~~~GGFS~gD~lgsg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~lg~l~p~ 1146 (1290)
T PRK05297       1083 GLVACGGFSYGDVLGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNGCQMMSNLKEIIPG 1146 (1290)
T ss_pred             EEEECCccCCcccchHHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEcHHHHHHHHhCCccCC
Confidence            99999996421           1245678899999988 78999999999999999998 7766

>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional

Probab=98.34  E-value=2e-06  Score=67.78  Aligned_cols=92  Identities=18%  Similarity=0.263  Sum_probs=65.8

Q ss_pred             CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG   88 (219)
Q Consensus         9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~   88 (219)
                      +||+|+-+..-   .+......|+..|+++.+++...                                  ++  .++|.
T Consensus         2 ~~v~iid~~~G---N~~sl~~al~~~g~~v~vv~~~~----------------------------------~l--~~~d~   42 (210)
T CHL00188          2 MKIGIIDYSMG---NLHSVSRAIQQAGQQPCIINSES----------------------------------EL--AQVHA   42 (210)
T ss_pred             cEEEEEEcCCc---cHHHHHHHHHHcCCcEEEEcCHH----------------------------------Hh--hhCCE
Confidence            48999998733   45667888888899888774311                                  11  35899


Q ss_pred             EEEcCCCCcc----cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC---------cccCCce
Q 027785           89 LVIPGGRAPE----YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA---------DVVKGRK  140 (219)
Q Consensus        89 liipGG~~~~----~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a---------GlL~g~~  140 (219)
                      ||+||+..+.    .+. ...+.+.|+++.++++|+.+||.|.++|++.         |+++|+-
T Consensus        43 iIlPG~g~~~~~~~~l~-~~gl~~~i~~~~~~~~pvlGIClG~Qll~~~~~~~~~~glg~~~G~v  106 (210)
T CHL00188         43 LVLPGVGSFDLAMKKLE-KKGLITPIKKWIAEGNPFIGICLGLHLLFETSEEGKEEGLGIYKGQV  106 (210)
T ss_pred             EEECCCCchHHHHHHHH-HCCHHHHHHHHHHcCCCEEEECHHHHHHhhccccCCcCCccceeEEE
Confidence            9999954422    121 2246677888889999999999999999985         5677743

>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]

Probab=98.34  E-value=1.3e-06  Score=65.94  Aligned_cols=84  Identities=24%  Similarity=0.353  Sum_probs=62.6

Q ss_pred             CEEEEEecCCCCchhhHHHHHHHHhCC-CeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785            9 RSVLLLCGDYMEDYEAMVPFQALLAFG-VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus         9 ~kv~il~~~g~~~~e~~~~~~~l~~ag-~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      +||+|+...|    ++..=.+.+++++ .++..+-.                                  .++  .+..|
T Consensus         1 m~IGVLalQG----~v~EH~~~l~~~~~~e~~~Vk~----------------------------------~~d--L~~~d   40 (194)
T COG0311           1 MKIGVLALQG----AVEEHLEALEKAGGAEVVEVKR----------------------------------PED--LEGVD   40 (194)
T ss_pred             CeEEEEEecc----cHHHHHHHHHhhcCCceEEEcC----------------------------------HHH--hccCc
Confidence            3899999999    5556666777775 44333311                                  122  24799


Q ss_pred             EEEEcCCCCc--ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHh
Q 027785           88 GLVIPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA  132 (219)
Q Consensus        88 ~liipGG~~~--~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~  132 (219)
                      +||||||.+.  ..+.....+.+-|+++.++|+|+.+.|+|..+||+
T Consensus        41 ~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~G~Pv~GTCAGlIlLak   87 (194)
T COG0311          41 GLIIPGGESTTIGRLLKRYGLLEPLREFIADGLPVFGTCAGLILLAK   87 (194)
T ss_pred             EEEecCccHHHHHHHHHHcCcHHHHHHHHHcCCceEEechhhhhhhh
Confidence            9999999763  33555567888999999999999999999999996

>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS)

Probab=98.28  E-value=2.1e-06  Score=67.08  Aligned_cols=76  Identities=24%  Similarity=0.251  Sum_probs=57.4

Q ss_pred             hhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCcccc-
Q 027785           22 YEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYL-  100 (219)
Q Consensus        22 ~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~-  100 (219)
                      ..+......|++.|+++.+++...                                  +  ..++|.|+|||+..+... 
T Consensus         9 ~~~~~~~~~l~~~g~~v~v~~~~~----------------------------------~--l~~~d~iiipG~~~~~~~~   52 (198)
T cd01748           9 GNLRSVANALERLGAEVIITSDPE----------------------------------E--ILSADKLILPGVGAFGDAM   52 (198)
T ss_pred             ChHHHHHHHHHHCCCeEEEEcChH----------------------------------H--hccCCEEEECCCCcHHHHH
Confidence            366777899999999888875310                                  1  236999999987433211 


Q ss_pred             --cCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785          101 --AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus       101 --~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                        ...+.+.++|+++.++++||.+||.|.++|+.+
T Consensus        53 ~~~~~~~~~~~i~~~~~~~~pilGiC~G~q~l~~~   87 (198)
T cd01748          53 ANLRERGLIEALKEAIASGKPFLGICLGMQLLFES   87 (198)
T ss_pred             HHHHHcChHHHHHHHHHCCCcEEEECHHHHHhccc
Confidence              123457899999999999999999999999997

Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=98.26  E-value=2.1e-06  Score=67.47  Aligned_cols=84  Identities=19%  Similarity=0.244  Sum_probs=60.3

Q ss_pred             EEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEE
Q 027785           11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLV   90 (219)
Q Consensus        11 v~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~li   90 (219)
                      |+|+-+.   ......+.+.|+..|.+++++...                                  .+  ..+||.||
T Consensus         2 i~~~d~~---~~~~~~i~~~l~~~G~~v~~~~~~----------------------------------~~--l~~~d~ii   42 (205)
T PRK13141          2 IAIIDYG---MGNLRSVEKALERLGAEAVITSDP----------------------------------EE--ILAADGVI   42 (205)
T ss_pred             EEEEEcC---CchHHHHHHHHHHCCCeEEEECCH----------------------------------HH--hccCCEEE
Confidence            4445444   335688899999999888886321                                  11  23699999


Q ss_pred             EcCCCCccc-c--cCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           91 IPGGRAPEY-L--AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        91 ipGG~~~~~-~--~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ||||..... .  ...+.+.++|+++.++++|+.+||.|.++|+..
T Consensus        43 ipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pvlGIC~G~Qll~~~   88 (205)
T PRK13141         43 LPGVGAFPDAMANLRERGLDEVIKEAVASGKPLLGICLGMQLLFES   88 (205)
T ss_pred             ECCCCchHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHHHHhhhc
Confidence            999643221 1  112357899999999999999999999999986

>PHA03366 FGAM-synthase; Provisional

Probab=98.24  E-value=8.7e-06  Score=79.08  Aligned_cols=97  Identities=22%  Similarity=0.178  Sum_probs=75.3

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      ..||+|+.++|.+  .-.....+|..+||++..+....                          +.....     ..+|+
T Consensus      1028 ~prVaIl~~pG~N--~~~e~~~Af~~aGf~~~~v~~~d--------------------------L~~~~~-----l~~f~ 1074 (1304)
T PHA03366       1028 RHRVAVLLLPGCP--GPHALLAAFTNAGFDPYPVSIEE--------------------------LKDGTF-----LDEFS 1074 (1304)
T ss_pred             CCeEEEEECCCCC--CHHHHHHHHHHcCCceEEEEeec--------------------------CCCCCc-----cccce
Confidence            4699999999998  45666778889999988776532                          000111     34799


Q ss_pred             EEEEcCCCCcc-----------cccCChHHHHHHHHHHh-cCCeEEEEeh-hHHHHHhCcccC
Q 027785           88 GLVIPGGRAPE-----------YLAMNDSVIDLVRKFSN-SGKTIASICH-GQLILAAADVVK  137 (219)
Q Consensus        88 ~liipGG~~~~-----------~~~~~~~l~~~l~~~~~-~~~~v~~ic~-G~~~La~aGlL~  137 (219)
                      .|++|||++..           .+..++.+.+.+++|++ +++++.+||+ |.++|.+.|+|.
T Consensus      1075 glv~~GGFS~gD~l~~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q~L~~lgll~ 1137 (1304)
T PHA03366       1075 GLVIGGSSGAEDSYTGARAAVAALLSNPAVRDALLRFLNRPDTFSLGCGELGCQILFALKAVG 1137 (1304)
T ss_pred             EEEEcCCCCCcccccHHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeCcHHHHHHHHcCCcc
Confidence            99999997531           13467899999999995 5999999999 999999999994

>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II

Probab=98.24  E-value=4.5e-06  Score=64.08  Aligned_cols=75  Identities=29%  Similarity=0.365  Sum_probs=56.7

Q ss_pred             HHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCcccccCChH
Q 027785           26 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDS  105 (219)
Q Consensus        26 ~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~~~~~~  105 (219)
                      ...+.++.+|.++.++..+..                               .++.+..+||.|+++||.+..  .+...
T Consensus        11 ~~~~~l~~~G~~~~~~~~~~~-------------------------------~~~~~~~~~dgiil~GG~~~~--~~~~~   57 (178)
T cd01744          11 NILRELLKRGCEVTVVPYNTD-------------------------------AEEILKLDPDGIFLSNGPGDP--ALLDE   57 (178)
T ss_pred             HHHHHHHHCCCeEEEEECCCC-------------------------------HHHHhhcCCCEEEECCCCCCh--hHhHH
Confidence            457788888988888755421                               111222479999999997531  23467


Q ss_pred             HHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785          106 VIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus       106 l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ..++++++.++++||.+||.|.++|+.+
T Consensus        58 ~~~~~~~~~~~~~PvlGIC~G~Q~l~~~   85 (178)
T cd01744          58 AIKTVRKLLGKKIPIFGICLGHQLLALA   85 (178)
T ss_pred             HHHHHHHHHhCCCCEEEECHHHHHHHHH
Confidence            8899999999999999999999999975

This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is

>PRK06895 putative anthranilate synthase component II; Provisional

Probab=98.21  E-value=8.6e-06  Score=63.19  Aligned_cols=87  Identities=15%  Similarity=0.301  Sum_probs=62.2

Q ss_pred             CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG   88 (219)
Q Consensus         9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~   88 (219)
                      |||+|+=.   .++.-..+.+.|++.|.+++++..+..                              ..+++  ..||.
T Consensus         2 ~~iliid~---~dsf~~~i~~~l~~~g~~~~v~~~~~~------------------------------~~~~l--~~~d~   46 (190)
T PRK06895          2 TKLLIINN---HDSFTFNLVDLIRKLGVPMQVVNVEDL------------------------------DLDEV--ENFSH   46 (190)
T ss_pred             cEEEEEeC---CCchHHHHHHHHHHcCCcEEEEECCcc------------------------------ChhHh--ccCCE
Confidence            46666643   222345589999999999988865421                              01222  36899


Q ss_pred             EEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           89 LVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        89 liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      |||.||.+..  ...+.+.++|++ +++++|+.+||-|.++|+.+
T Consensus        47 iIi~gGp~~~--~~~~~~~~~i~~-~~~~~PiLGIClG~Qlla~~   88 (190)
T PRK06895         47 ILISPGPDVP--RAYPQLFAMLER-YHQHKSILGVCLGHQTLCEF   88 (190)
T ss_pred             EEECCCCCCh--HHhhHHHHHHHH-hcCCCCEEEEcHHHHHHHHH
Confidence            9999988732  134567889986 78899999999999999987

>PRK05665 amidotransferase; Provisional

Probab=98.17  E-value=2.8e-05  Score=62.46  Aligned_cols=50  Identities=20%  Similarity=0.401  Sum_probs=41.0

Q ss_pred             CCccEEEEcCCCC-cc-cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           84 TKYDGLVIPGGRA-PE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        84 ~~~D~liipGG~~-~~-~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ..||.+||.||.. +. ..+.-..+.+||++++++++++.+||-|.++||.+
T Consensus        56 ~~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQlla~A  107 (240)
T PRK05665         56 EKFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQLLALL  107 (240)
T ss_pred             ccCCEEEECCCCCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHHHHHHH
Confidence            4799999999964 32 12223568999999999999999999999999987

>PRK09065 glutamine amidotransferase; Provisional

Probab=98.16  E-value=1.8e-05  Score=63.49  Aligned_cols=50  Identities=28%  Similarity=0.515  Sum_probs=40.9

Q ss_pred             CCccEEEEcCCCCcc--cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           84 TKYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        84 ~~~D~liipGG~~~~--~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      .+||.|||.||....  ..+....+.+||+++.++++||.+||-|.++|+.+
T Consensus        53 ~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~a  104 (237)
T PRK09065         53 DDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQLLAHA  104 (237)
T ss_pred             hhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHHHHHHH
Confidence            479999999997531  12223567999999999999999999999999987

>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase

Probab=98.15  E-value=1.9e-05  Score=76.32  Aligned_cols=98  Identities=17%  Similarity=0.123  Sum_probs=75.2

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      ..||+|+.++|.+  .-.....+|..+||++..+....-                          .....     ..+|+
T Consensus       929 ~p~VaIl~~pG~N--~~~e~~~Af~~aGf~~~~v~~~dl--------------------------~~~~~-----l~~f~  975 (1202)
T TIGR01739       929 RHQVAVLLLPGQS--VPHGLLAALTNAGFDPRIVSITEL--------------------------KKTDF-----LDTFS  975 (1202)
T ss_pred             CCeEEEEeCCCCC--CHHHHHHHHHHcCCceEEEEeccC--------------------------CCCCc-----hhheE
Confidence            4589999999998  556667788899999888765421                          00111     23799


Q ss_pred             EEEEcCCCCcc-----------cccCChHHHHHHHHHHh-cCCeEEEEeh-hHHHHHhCcccCC
Q 027785           88 GLVIPGGRAPE-----------YLAMNDSVIDLVRKFSN-SGKTIASICH-GQLILAAADVVKG  138 (219)
Q Consensus        88 ~liipGG~~~~-----------~~~~~~~l~~~l~~~~~-~~~~v~~ic~-G~~~La~aGlL~g  138 (219)
                      .|++|||++..           .+..++.+.+.+++|++ .++++.+||+ |.++|.+.|+|..
T Consensus       976 glv~~Ggfsy~D~lgsg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q~L~~lg~l~~ 1039 (1202)
T TIGR01739       976 GLIIGGASGTLDSEVGARALAAALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQLLLALNIVGY 1039 (1202)
T ss_pred             EEEEcCcCCCCccchHHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeCcHHHHHHHHcCCCcC
Confidence            99999997521           13457899999999995 5999999999 9999999999853

This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.

>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=98.13  E-value=1.1e-05  Score=63.50  Aligned_cols=87  Identities=20%  Similarity=0.177  Sum_probs=56.7

Q ss_pred             CEEEEEecCCCCchhhHHHHHHHHhCCCe--EEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCc
Q 027785            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVS--VDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKY   86 (219)
Q Consensus         9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~--v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~   86 (219)
                      +||+|+=|..-+   +......|++.|.+  +.+++.                                  -+++  .++
T Consensus         2 ~~~~iid~g~gn---~~s~~~al~~~g~~~~v~~~~~----------------------------------~~~l--~~~   42 (209)
T PRK13146          2 MTVAIIDYGSGN---LRSAAKALERAGAGADVVVTAD----------------------------------PDAV--AAA   42 (209)
T ss_pred             CeEEEEECCCCh---HHHHHHHHHHcCCCccEEEECC----------------------------------HHHh--cCC
Confidence            589988776444   45556788888873  333321                                  1222  479


Q ss_pred             cEEEEcCCCCcc----cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCc
Q 027785           87 DGLVIPGGRAPE----YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD  134 (219)
Q Consensus        87 D~liipGG~~~~----~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aG  134 (219)
                      |.|||||+....    .+........+++..++.++|+.+||.|.++|++++
T Consensus        43 d~lIlpG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~PvlGiC~G~q~l~~~~   94 (209)
T PRK13146         43 DRVVLPGVGAFADCMRGLRAVGLGEAVIEAVLAAGRPFLGICVGMQLLFERG   94 (209)
T ss_pred             CEEEECCCCcHHHHHHHHHHCCcHHHHHHHHHhCCCcEEEECHHHHHHhhcc
Confidence            999999975321    122222233455555678999999999999999984

>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit

Probab=98.07  E-value=1.6e-05  Score=61.58  Aligned_cols=78  Identities=19%  Similarity=0.318  Sum_probs=55.9

Q ss_pred             hhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCccccc
Q 027785           22 YEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLA  101 (219)
Q Consensus        22 ~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~~  101 (219)
                      .-...+...|++.|++++++..+..                               .++++..++|.||+|||.+...  
T Consensus         9 ~~~~~l~~~l~~~g~~~~~~~~~~~-------------------------------~~~~~~~~~~glii~Gg~~~~~--   55 (188)
T TIGR00888         9 QYTQLIARRLRELGVYSELVPNTTP-------------------------------LEEIREKNPKGIILSGGPSSVY--   55 (188)
T ss_pred             hHHHHHHHHHHHcCCEEEEEeCCCC-------------------------------HHHHhhcCCCEEEECCCCCCcC--
Confidence            3456677889999998888755421                               1111112467999999975322  


Q ss_pred             CChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785          102 MNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus       102 ~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                       +.....|+++..++++||.+||.|.++|+.+
T Consensus        56 -~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~   86 (188)
T TIGR00888        56 -AENAPRADEKIFELGVPVLGICYGMQLMAKQ   86 (188)
T ss_pred             -cCCchHHHHHHHhCCCCEEEECHHHHHHHHh
Confidence             2234678888899999999999999999976

separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.

>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []

Probab=97.95  E-value=1.1e-05  Score=60.69  Aligned_cols=54  Identities=26%  Similarity=0.450  Sum_probs=45.6

Q ss_pred             CCCCccEEEEcCCCCc---ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcc
Q 027785           82 DPTKYDGLVIPGGRAP---EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADV  135 (219)
Q Consensus        82 ~~~~~D~liipGG~~~---~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGl  135 (219)
                      .++++|+|++|||.-.   ..+.++..+.+.|+++.++|++|.++|.|-.+|.++=.
T Consensus         4 ~~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i~   60 (158)
T PF07685_consen    4 LPPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESII   60 (158)
T ss_pred             CCCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHHh
Confidence            3578999999999742   33566788999999999999999999999999997643

Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process

>PRK07567 glutamine amidotransferase; Provisional

Probab=97.94  E-value=6e-05  Score=60.70  Aligned_cols=95  Identities=15%  Similarity=0.117  Sum_probs=57.4

Q ss_pred             CEEEEEecCCCCchhhHHHHHHHHhCCCe---EEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCC
Q 027785            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVS---VDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTK   85 (219)
Q Consensus         9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~---v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~   85 (219)
                      |+|+|+-....+........+.|+..+..   +.++....+                            +....  +..+
T Consensus         2 ~~ililq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~--~~~~   51 (242)
T PRK07567          2 KPFLLLSPRPEDEAADAEYAAFLRYTGLDPAELRRIRLDRE----------------------------PLPDL--DLDD   51 (242)
T ss_pred             CcEEEEecCCCcccccchHHHHHHhcCCCccceEEEecccC----------------------------CCCCC--CHhh
Confidence            45877776554443236667777777654   443322211                            00011  2357


Q ss_pred             ccEEEEcCCCCc-ccc--cCCh---HHH----HHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           86 YDGLVIPGGRAP-EYL--AMND---SVI----DLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        86 ~D~liipGG~~~-~~~--~~~~---~l~----~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ||.+||.||... ...  ...+   .+.    ++++...++++||.+||.|.++|+.+
T Consensus        52 ~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Qlla~a  109 (242)
T PRK07567         52 YSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGVGTLGHH  109 (242)
T ss_pred             ccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhHHHHHHH
Confidence            999999999742 211  1122   233    44555558999999999999999987

>TIGR00379 cobB cobyrinic acid a,c-diamide synthase

Probab=97.94  E-value=6.2e-05  Score=66.01  Aligned_cols=90  Identities=21%  Similarity=0.294  Sum_probs=67.2

Q ss_pred             CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG   88 (219)
Q Consensus         9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~   88 (219)
                      .||+|+-.+-|+..= ..=.+.|++.|.++..+++-.+                             .   ++  +++|+
T Consensus       245 ~~Iava~d~afnFy~-~~~~~~L~~~g~~~~~~~~~~d-----------------------------~---~l--~~~d~  289 (449)
T TIGR00379       245 VRIAVAQDQAFNFYY-QDNLDALTHNAAELVPFSPLED-----------------------------T---EL--PDVDA  289 (449)
T ss_pred             cEEEEEechhhceeH-HHHHHHHHHCCCEEEEECCccC-----------------------------C---CC--CCCCE
Confidence            479988877665411 2345667778988888876421                             1   11  27899


Q ss_pred             EEEcCCCCc---ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           89 LVIPGGRAP---EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        89 liipGG~~~---~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      |+||||...   ..+..+..+.+.|+++.++|++|.++|.|-++|++.
T Consensus       290 l~ipGG~~~~~~~~l~~~~~~~~~i~~~~~~G~pv~g~CgG~~~L~~~  337 (449)
T TIGR00379       290 VYIGGGFPELFAEELSQNQALRDSIKTFIHQGLPIYGECGGLMYLSQS  337 (449)
T ss_pred             EEeCCcHHHHHHHHHHhhhHHHHHHHHHHHcCCCEEEEcHHHHHHHhh
Confidence            999999742   235557789999999999999999999999999976

This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.

>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.93  E-value=2.9e-05  Score=60.54  Aligned_cols=82  Identities=20%  Similarity=0.266  Sum_probs=52.3

Q ss_pred             EEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEE
Q 027785           10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGL   89 (219)
Q Consensus        10 kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l   89 (219)
                      +|+|+=|..-   -+..+...|++.|.++.++...                                  +++  .++|.|
T Consensus         2 ~i~iid~g~g---n~~s~~~~l~~~g~~~~~v~~~----------------------------------~~~--~~~d~i   42 (196)
T PRK13170          2 NVVIIDTGCA---NLSSVKFAIERLGYEPVVSRDP----------------------------------DVI--LAADKL   42 (196)
T ss_pred             eEEEEeCCCc---hHHHHHHHHHHCCCeEEEECCH----------------------------------HHh--CCCCEE
Confidence            6777665433   3455666888889888777432                                  112  257899


Q ss_pred             EEcCCCCcccc---cCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           90 VIPGGRAPEYL---AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        90 iipGG~~~~~~---~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      |+||+..+...   .....+.++|+   +.++||.+||.|.++|+.+
T Consensus        43 IlPG~G~~~~~~~~l~~~~l~~~i~---~~~~PilGIClG~Qll~~~   86 (196)
T PRK13170         43 FLPGVGTAQAAMDQLRERELIDLIK---ACTQPVLGICLGMQLLGER   86 (196)
T ss_pred             EECCCCchHHHHHHHHHcChHHHHH---HcCCCEEEECHHHHHHhhh
Confidence            99985432211   11122444554   4589999999999999987

>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase

Probab=97.92  E-value=6.8e-05  Score=57.55  Aligned_cols=76  Identities=20%  Similarity=0.307  Sum_probs=50.9

Q ss_pred             hHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCcccccCC
Q 027785           24 AMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMN  103 (219)
Q Consensus        24 ~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~~~~  103 (219)
                      ...+...|+..|.++.++..+..                               .++.+..++|.||+|||.+.......
T Consensus        11 ~~~~~~~l~~~G~~~~~~~~~~~-------------------------------~~~~~~~~~dgvIl~Gg~~~~~~~~~   59 (181)
T cd01742          11 THLIARRVRELGVYSEILPNTTP-------------------------------LEEIKLKNPKGIILSGGPSSVYEEDA   59 (181)
T ss_pred             HHHHHHHHHhcCceEEEecCCCC-------------------------------hhhhcccCCCEEEECCCccccccccc
Confidence            35568888889988887755421                               11112347999999999753221112


Q ss_pred             hHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785          104 DSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus       104 ~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      +.+.   ++..+.++|+.+||.|.++|+.+
T Consensus        60 ~~~~---~~~~~~~~PilGIC~G~Qll~~~   86 (181)
T cd01742          60 PRVD---PEIFELGVPVLGICYGMQLIAKA   86 (181)
T ss_pred             chhh---HHHHhcCCCEEEEcHHHHHHHHh
Confidence            3333   44455699999999999999985

Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.92  E-value=3.4e-05  Score=60.28  Aligned_cols=49  Identities=16%  Similarity=0.320  Sum_probs=38.2

Q ss_pred             CccEEEEcCCCCccc-c--cCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           85 KYDGLVIPGGRAPEY-L--AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        85 ~~D~liipGG~~~~~-~--~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ++|.||+||+..+.. .  .....+.++|+++.+.++||.+||.|.++|+.+
T Consensus        37 ~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G~Qll~~~   88 (199)
T PRK13181         37 GADKVILPGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLGMQLLFES   88 (199)
T ss_pred             cCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHhHHHhhhh
Confidence            689999999654211 1  112346788999999999999999999999997

>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit

Probab=97.91  E-value=4.5e-05  Score=59.45  Aligned_cols=74  Identities=26%  Similarity=0.229  Sum_probs=52.9

Q ss_pred             hhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCccc---
Q 027785           23 EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEY---   99 (219)
Q Consensus        23 e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~---   99 (219)
                      .+..+...|+..|.+++++..+.                                  +  ..++|.|++||+.....   
T Consensus        10 n~~~l~~~l~~~g~~v~v~~~~~----------------------------------~--l~~~d~lii~G~~~~~~~~~   53 (196)
T TIGR01855        10 NLGSVKRALKRVGAEPVVVKDSK----------------------------------E--AELADKLILPGVGAFGAAMA   53 (196)
T ss_pred             HHHHHHHHHHHCCCcEEEEcCHH----------------------------------H--hccCCEEEECCCCCHHHHHH
Confidence            67888889999998887775211                                  1  13699999998543211   


Q ss_pred             -ccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785          100 -LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus       100 -~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                       +.... +..+++++.+.++||.++|.|.++|+.+
T Consensus        54 ~l~~~~-~~~l~~~~~~~~~pvlGiC~G~Qll~~~   87 (196)
T TIGR01855        54 RLRENG-LDLFVELVVRLGKPVLGICLGMQLLFER   87 (196)
T ss_pred             HHHHcC-cHHHHHHHHhCCCCEEEECHHHHHhhhc
Confidence             11112 3445587888999999999999999998

This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.

>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]

Probab=97.91  E-value=2.2e-05  Score=59.87  Aligned_cols=59  Identities=31%  Similarity=0.521  Sum_probs=41.4

Q ss_pred             CccEEEEcCCCCc--ccccCChHHHHHHHHHHhcC-CeEEEEehhHHHHHhC------cccCCceEee
Q 027785           85 KYDGLVIPGGRAP--EYLAMNDSVIDLVRKFSNSG-KTIASICHGQLILAAA------DVVKGRKCTA  143 (219)
Q Consensus        85 ~~D~liipGG~~~--~~~~~~~~l~~~l~~~~~~~-~~v~~ic~G~~~La~a------GlL~g~~~t~  143 (219)
                      +.|.||||||...  ..+.....+.+-|+++.+.| +||.+.|+|..+||+.      ..|.+..+++
T Consensus        33 ~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlIlLa~~v~~~~q~~Lg~ldi~V  100 (188)
T PF01174_consen   33 GLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLILLAKEVEGQGQPLLGLLDITV  100 (188)
T ss_dssp             T-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHHHHEEEECSSCCTSS--EEEEE
T ss_pred             cCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHHHhhhhhhhcccccccceeEEE
Confidence            6899999999753  23445567899999999998 9999999999999974      2344445554

The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.

>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=97.89  E-value=0.00015  Score=56.54  Aligned_cols=50  Identities=32%  Similarity=0.508  Sum_probs=41.6

Q ss_pred             CCccEEEEcCCCCcccccC--ChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           84 TKYDGLVIPGGRAPEYLAM--NDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        84 ~~~D~liipGG~~~~~~~~--~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ..+|.+||.||+..-....  .+...+||++....+++|.+||.|.++||.+
T Consensus        44 ~~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~~pvLGIC~G~Ql~A~~   95 (198)
T COG0518          44 DSPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVPGKPVLGICLGHQLLAKA   95 (198)
T ss_pred             cCCCEEEEcCCCCCCccccccchhHHHHHHHhCCCCCCEEEEChhHHHHHHH
Confidence            3569999999985322233  6889999999999999999999999999975

>PRK07765 para-aminobenzoate synthase component II; Provisional

Probab=97.89  E-value=6.4e-05  Score=59.43  Aligned_cols=80  Identities=19%  Similarity=0.360  Sum_probs=57.7

Q ss_pred             hHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCcccccCC
Q 027785           24 AMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMN  103 (219)
Q Consensus        24 ~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~~~~  103 (219)
                      .....+.|++.|+++.++..+...                        + +  ...+. ...||.|||.||++..  .+.
T Consensus        13 ~~~~~~~l~~~G~~~~~~~~~~~~------------------------~-~--~~~~~-~~~~dgliisGGp~~~--~~~   62 (214)
T PRK07765         13 VFNLVQYLGQLGVEAEVWRNDDPR------------------------L-A--DEAAV-AAQFDGVLLSPGPGTP--ERA   62 (214)
T ss_pred             HHHHHHHHHHcCCcEEEEECCCcC------------------------H-H--HHHHh-hcCCCEEEECCCCCCh--hhc
Confidence            345677888999999888665310                        0 0  01111 2369999999998632  234


Q ss_pred             hHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785          104 DSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus       104 ~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ....+|++++.++++||.+||-|.++|+.+
T Consensus        63 ~~~~~~i~~~~~~~~PiLGIC~G~Qlla~a   92 (214)
T PRK07765         63 GASIDMVRACAAAGTPLLGVCLGHQAIGVA   92 (214)
T ss_pred             chHHHHHHHHHhCCCCEEEEccCHHHHHHH
Confidence            556799999999999999999999999987

>PRK08007 para-aminobenzoate synthase component II; Provisional

Probab=97.85  E-value=5.5e-05  Score=58.53  Aligned_cols=87  Identities=22%  Similarity=0.303  Sum_probs=58.0

Q ss_pred             EEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEc
Q 027785           13 LLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIP   92 (219)
Q Consensus        13 il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liip   92 (219)
                      |++-|+++..- ..+.+.|++.|.++.++..+..                              +++++...+||.||+.
T Consensus         2 il~idn~Dsft-~nl~~~l~~~g~~v~v~~~~~~------------------------------~~~~~~~~~~d~iils   50 (187)
T PRK08007          2 ILLIDNYDSFT-WNLYQYFCELGADVLVKRNDAL------------------------------TLADIDALKPQKIVIS   50 (187)
T ss_pred             EEEEECCCccH-HHHHHHHHHCCCcEEEEeCCCC------------------------------CHHHHHhcCCCEEEEc
Confidence            44545544222 3467888888998888765421                              1222222368999999


Q ss_pred             CCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           93 GGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        93 GG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ||++...  +......+++. +++++||.+||-|.++|+.+
T Consensus        51 ~GPg~p~--~~~~~~~~~~~-~~~~~PiLGIClG~Q~la~a   88 (187)
T PRK08007         51 PGPCTPD--EAGISLDVIRH-YAGRLPILGVCLGHQAMAQA   88 (187)
T ss_pred             CCCCChH--HCCccHHHHHH-hcCCCCEEEECHHHHHHHHH
Confidence            9986321  23345666765 57889999999999999987

>PRK00784 cobyric acid synthase; Provisional

Probab=97.84  E-value=6e-05  Score=66.80  Aligned_cols=49  Identities=18%  Similarity=0.351  Sum_probs=40.2

Q ss_pred             CccEEEEcCCCCcc---cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           85 KYDGLVIPGGRAPE---YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        85 ~~D~liipGG~~~~---~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ++|.|++|||....   .+..+..+.+.|+++.++|++|.++|.|-.+|++.
T Consensus       290 ~~d~lilpGg~~~~~~~~~~~~~~l~~~i~~~~~~g~pilg~C~G~~~L~~~  341 (488)
T PRK00784        290 DADLVILPGSKNTIADLAWLRESGWDEAIRAHARRGGPVLGICGGYQMLGRR  341 (488)
T ss_pred             cCCEEEECCccchHHHHHHHHHcCHHHHHHHHHHcCCeEEEECHHHHHHhhh
Confidence            78999999997421   22345568899999999999999999999999974

>PRK06774 para-aminobenzoate synthase component II; Provisional

Probab=97.83  E-value=6e-05  Score=58.50  Aligned_cols=76  Identities=18%  Similarity=0.249  Sum_probs=53.0

Q ss_pred             HHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCcccccCCh
Q 027785           25 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMND  104 (219)
Q Consensus        25 ~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~~~~~  104 (219)
                      ..+.+.|++.|.++.++..+..                              .++++...++|.||+-||++...  +..
T Consensus        13 ~nl~~~l~~~~~~~~v~~~~~~------------------------------~~~~~~~~~~~~iilsgGP~~~~--~~~   60 (191)
T PRK06774         13 YNLYQYFCELGTEVMVKRNDEL------------------------------QLTDIEQLAPSHLVISPGPCTPN--EAG   60 (191)
T ss_pred             HHHHHHHHHCCCcEEEEeCCCC------------------------------CHHHHHhcCCCeEEEcCCCCChH--hCC
Confidence            4478888999999988865431                              12222223689999999986321  223


Q ss_pred             HHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785          105 SVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus       105 ~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ....+++. +++++||.+||-|.++|+.+
T Consensus        61 ~~~~~i~~-~~~~~PiLGIC~G~Qlla~~   88 (191)
T PRK06774         61 ISLAVIRH-FADKLPILGVCLGHQALGQA   88 (191)
T ss_pred             CchHHHHH-hcCCCCEEEECHHHHHHHHH
Confidence            34566654 57799999999999999987

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=97.82  E-value=0.00012  Score=65.26  Aligned_cols=87  Identities=18%  Similarity=0.248  Sum_probs=61.4

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      .++|+|+=|..=   .+......|+..|+++.++...                                  ++  ...+|
T Consensus         6 ~~~i~iiDyG~G---N~~sl~~al~~~G~~v~~v~~~----------------------------------~~--l~~~D   46 (538)
T PLN02617          6 DSEVTLLDYGAG---NVRSVRNAIRHLGFTIKDVQTP----------------------------------ED--ILNAD   46 (538)
T ss_pred             CCeEEEEECCCC---CHHHHHHHHHHCCCeEEEECCh----------------------------------hh--hccCC
Confidence            468887765433   4556677888889888766321                                  11  24799


Q ss_pred             EEEEcCCCCccc---ccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           88 GLVIPGGRAPEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        88 ~liipGG~~~~~---~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      .||+||+.....   ......+.+.|+++.+.++|+.+||.|.++|+++
T Consensus        47 ~lIlpG~gs~~~~m~~L~~~gl~~~i~~~i~~g~PvLGIC~G~QlLa~~   95 (538)
T PLN02617         47 RLIFPGVGAFGSAMDVLNNRGMAEALREYIQNDRPFLGICLGLQLLFES   95 (538)
T ss_pred             EEEECCCCCHHHHHHHHHHcCHHHHHHHHHHcCCCEEEECHHHHHHhhh
Confidence            999999754321   1122347788999999999999999999999975

>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]

Probab=97.82  E-value=8.9e-05  Score=57.12  Aligned_cols=85  Identities=26%  Similarity=0.298  Sum_probs=62.8

Q ss_pred             CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG   88 (219)
Q Consensus         9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~   88 (219)
                      ++|+|+=|.-   -.+......|+++|+++.+.+...                                  ++  ...|.
T Consensus         2 ~~i~IIDyg~---GNL~Sv~~Aler~G~~~~vs~d~~----------------------------------~i--~~AD~   42 (204)
T COG0118           2 MMVAIIDYGS---GNLRSVKKALERLGAEVVVSRDPE----------------------------------EI--LKADK   42 (204)
T ss_pred             CEEEEEEcCc---chHHHHHHHHHHcCCeeEEecCHH----------------------------------HH--hhCCE
Confidence            4788887653   356777888889998876643321                                  12  36999


Q ss_pred             EEEcCCCC---cc-cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           89 LVIPGGRA---PE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        89 liipGG~~---~~-~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ||+||=..   ++ .+. ...+.+.|++..+.++|+.+||-|.++|.+.
T Consensus        43 liLPGVGaf~~am~~L~-~~gl~~~i~~~~~~~kP~LGIClGMQlLfe~   90 (204)
T COG0118          43 LILPGVGAFGAAMANLR-ERGLIEAIKEAVESGKPFLGICLGMQLLFER   90 (204)
T ss_pred             EEecCCCCHHHHHHHHH-hcchHHHHHHHHhcCCCEEEEeHhHHhhhhc
Confidence            99998422   22 233 3478999999999999999999999999875

>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed

Probab=97.77  E-value=0.00014  Score=61.76  Aligned_cols=87  Identities=24%  Similarity=0.283  Sum_probs=61.8

Q ss_pred             CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG   88 (219)
Q Consensus         9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~   88 (219)
                      +||+++=+ |+.    ......|.+.|.++.++..+.                               +++++...++|.
T Consensus       178 ~~I~viD~-G~k----~nivr~L~~~G~~v~vvp~~~-------------------------------~~~~i~~~~~DG  221 (360)
T PRK12564        178 YKVVAIDF-GVK----RNILRELAERGCRVTVVPATT-------------------------------TAEEILALNPDG  221 (360)
T ss_pred             CEEEEEeC-CcH----HHHHHHHHHCCCEEEEEeCCC-------------------------------CHHHHHhcCCCE
Confidence            46666554 332    357778888898888875432                               112222226999


Q ss_pred             EEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           89 LVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        89 liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      |+++||++..  .+.+..+++++++.++++||.+||.|.++|+.+
T Consensus       222 IvLSgGPgdp--~~~~~~~~~i~~~~~~~~PilGIClG~QlLa~a  264 (360)
T PRK12564        222 VFLSNGPGDP--AALDYAIEMIRELLEKKIPIFGICLGHQLLALA  264 (360)
T ss_pred             EEEeCCCCCh--HHHHHHHHHHHHHHHcCCeEEEECHHHHHHHHH
Confidence            9999998632  223678899999999899999999999999976

>PRK05670 anthranilate synthase component II; Provisional

Probab=97.77  E-value=0.00012  Score=56.69  Aligned_cols=80  Identities=18%  Similarity=0.204  Sum_probs=55.1

Q ss_pred             chhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCcccc
Q 027785           21 DYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYL  100 (219)
Q Consensus        21 ~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~  100 (219)
                      ++=.....+.|++.|+++.++..+...                           ...+++   .++|.|||.||++... 
T Consensus         9 d~f~~~i~~~l~~~g~~~~v~~~~~~~---------------------------~~~~~~---~~~dglIlsgGpg~~~-   57 (189)
T PRK05670          9 DSFTYNLVQYLGELGAEVVVYRNDEIT---------------------------LEEIEA---LNPDAIVLSPGPGTPA-   57 (189)
T ss_pred             CchHHHHHHHHHHCCCcEEEEECCCCC---------------------------HHHHHh---CCCCEEEEcCCCCChH-
Confidence            334466788888999999888664310                           001222   2489999999886321 


Q ss_pred             cCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785          101 AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus       101 ~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                       +......+|++ ..+++||.+||-|.++|+.+
T Consensus        58 -d~~~~~~~l~~-~~~~~PvLGIClG~Qlla~a   88 (189)
T PRK05670         58 -EAGISLELIRE-FAGKVPILGVCLGHQAIGEA   88 (189)
T ss_pred             -HcchHHHHHHH-hcCCCCEEEECHHHHHHHHH
Confidence             22345677776 46789999999999999987

>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase

Probab=97.76  E-value=0.00013  Score=56.56  Aligned_cols=76  Identities=20%  Similarity=0.236  Sum_probs=52.6

Q ss_pred             HHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCcccccCCh
Q 027785           25 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMND  104 (219)
Q Consensus        25 ~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~~~~~  104 (219)
                      ....+.|+..|+++.++..+..                              +++++...++|.|||.||++...  +..
T Consensus        13 ~~~~~~l~~~g~~v~v~~~~~~------------------------------~~~~~~~~~~d~iilsgGpg~p~--~~~   60 (188)
T TIGR00566        13 YNLVQYFCELGAEVVVKRNDSL------------------------------TLQEIEALLPLLIVISPGPCTPN--EAG   60 (188)
T ss_pred             HHHHHHHHHcCCceEEEECCCC------------------------------CHHHHHhcCCCEEEEcCCCCChh--hcc
Confidence            3466778888988877754421                              11222223589999999986321  223


Q ss_pred             HHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785          105 SVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus       105 ~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ...++++++ ++++||.+||.|.++|+.+
T Consensus        61 ~~~~~i~~~-~~~~PvLGIC~G~Qll~~~   88 (188)
T TIGR00566        61 ISLEAIRHF-AGKLPILGVCLGHQAMGQA   88 (188)
T ss_pred             hhHHHHHHh-ccCCCEEEECHHHHHHHHH
Confidence            347888877 6789999999999999977

This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.

>PRK05637 anthranilate synthase component II; Provisional

Probab=97.73  E-value=0.00015  Score=57.01  Aligned_cols=87  Identities=16%  Similarity=0.160  Sum_probs=57.9

Q ss_pred             CEEEEEec-CCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785            9 RSVLLLCG-DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus         9 ~kv~il~~-~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      +||+++=+ |+|.    ..+.+.|+..|..++++..+..                               ++++....||
T Consensus         2 ~~il~iD~~dsf~----~nl~~~l~~~g~~~~v~~~~~~-------------------------------~~~l~~~~~~   46 (208)
T PRK05637          2 THVVLIDNHDSFV----YNLVDAFAVAGYKCTVFRNTVP-------------------------------VEEILAANPD   46 (208)
T ss_pred             CEEEEEECCcCHH----HHHHHHHHHCCCcEEEEeCCCC-------------------------------HHHHHhcCCC
Confidence            46655543 3433    5578889999999888865421                               1222223689


Q ss_pred             EEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        88 ~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      .||+-||++...  +.....++++... .++||.+||.|.++|+.+
T Consensus        47 ~iIlsgGPg~~~--d~~~~~~li~~~~-~~~PiLGIClG~Qlla~a   89 (208)
T PRK05637         47 LICLSPGPGHPR--DAGNMMALIDRTL-GQIPLLGICLGFQALLEH   89 (208)
T ss_pred             EEEEeCCCCCHH--HhhHHHHHHHHHh-CCCCEEEEcHHHHHHHHH
Confidence            999988887421  2223456665543 579999999999999987

>PRK13566 anthranilate synthase; Provisional

Probab=97.71  E-value=0.00024  Score=65.58  Aligned_cols=90  Identities=16%  Similarity=0.111  Sum_probs=67.1

Q ss_pred             CCCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCc
Q 027785            7 GKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKY   86 (219)
Q Consensus         7 ~~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~   86 (219)
                      .++||+||=+..   .-...+.+.|+..|.++.++..+..                            ...++   ..++
T Consensus       525 ~g~~IlvID~~d---sf~~~l~~~Lr~~G~~v~vv~~~~~----------------------------~~~~~---~~~~  570 (720)
T PRK13566        525 EGKRVLLVDHED---SFVHTLANYFRQTGAEVTTVRYGFA----------------------------EEMLD---RVNP  570 (720)
T ss_pred             CCCEEEEEECCC---chHHHHHHHHHHCCCEEEEEECCCC----------------------------hhHhh---hcCC
Confidence            367887777653   3467888999999999998876531                            01111   1369


Q ss_pred             cEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        87 D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      |.|||.||.+..   .+..+.++|++..++++||.+||-|.++|+.+
T Consensus       571 DgVVLsgGpgsp---~d~~~~~lI~~a~~~~iPILGIClG~QlLa~a  614 (720)
T PRK13566        571 DLVVLSPGPGRP---SDFDCKATIDAALARNLPIFGVCLGLQAIVEA  614 (720)
T ss_pred             CEEEECCCCCCh---hhCCcHHHHHHHHHCCCcEEEEehhHHHHHHH
Confidence            999998887642   22347899999999999999999999999987

>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []

Probab=97.71  E-value=6.2e-05  Score=58.27  Aligned_cols=79  Identities=29%  Similarity=0.514  Sum_probs=59.4

Q ss_pred             hHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCcccccCC
Q 027785           24 AMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMN  103 (219)
Q Consensus        24 ~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~~~~  103 (219)
                      ...+...|++.|.+++++......                           ....+  +..+||.++|+||.+...  +.
T Consensus        10 ~~~l~~~l~~~~~~~~v~~~~~~~---------------------------~~~~~--~~~~~d~iii~Gg~~~~~--d~   58 (192)
T PF00117_consen   10 THSLVRALRELGIDVEVVRVDSDF---------------------------EEPLE--DLDDYDGIIISGGPGSPY--DI   58 (192)
T ss_dssp             HHHHHHHHHHTTEEEEEEETTGGH---------------------------HHHHH--HTTTSSEEEEECESSSTT--SH
T ss_pred             HHHHHHHHHHCCCeEEEEECCCch---------------------------hhhhh--hhcCCCEEEECCcCCccc--cc
Confidence            356778888999888888654310                           00011  235899999999987432  25


Q ss_pred             hHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785          104 DSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus       104 ~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      +...++++++.++++|+.+||.|.++|+.+
T Consensus        59 ~~~~~~i~~~~~~~~PilGIC~G~Q~la~~   88 (192)
T PF00117_consen   59 EGLIELIREARERKIPILGICLGHQILAHA   88 (192)
T ss_dssp             HHHHHHHHHHHHTTSEEEEETHHHHHHHHH
T ss_pred             cccccccccccccceEEEEEeehhhhhHHh
Confidence            788999999999999999999999999986

The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....

>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=97.68  E-value=0.00013  Score=56.58  Aligned_cols=50  Identities=30%  Similarity=0.480  Sum_probs=38.8

Q ss_pred             CCccEEEEcCCCCccc---------------ccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           84 TKYDGLVIPGGRAPEY---------------LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        84 ~~~D~liipGG~~~~~---------------~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ..+|.||+|||.+...               ..++....++++++.+.++||.+||.|.++|+.+
T Consensus        52 ~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~PilgiC~G~Q~l~~~  116 (189)
T cd01745          52 ELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAALERGKPILGICRGMQLLNVA  116 (189)
T ss_pred             hhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHHHHHCCCCEEEEcchHHHHHHH
Confidence            3699999999974210               1112345889999999999999999999999976

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional

Probab=97.64  E-value=0.00038  Score=59.52  Aligned_cols=87  Identities=21%  Similarity=0.310  Sum_probs=61.4

Q ss_pred             CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG   88 (219)
Q Consensus         9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~   88 (219)
                      +||+++=+ |+.    ..+...|++.|.++.++..+.                               +.+++...++|.
T Consensus       193 ~~I~viD~-g~k----~ni~~~L~~~G~~v~vvp~~~-------------------------------~~~~i~~~~~dg  236 (382)
T CHL00197        193 LKIIVIDF-GVK----YNILRRLKSFGCSITVVPATS-------------------------------PYQDILSYQPDG  236 (382)
T ss_pred             CEEEEEEC-CcH----HHHHHHHHHCCCeEEEEcCCC-------------------------------CHHHHhccCCCE
Confidence            56666655 444    447888888999888874331                               112222236999


Q ss_pred             EEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           89 LVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        89 liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      |++.||++..  ......++.++++.+.+.||.+||.|-++|+.+
T Consensus       237 IilSgGPg~p--~~~~~~i~~i~~~~~~~~PilGIClGhQlLa~a  279 (382)
T CHL00197        237 ILLSNGPGDP--SAIHYGIKTVKKLLKYNIPIFGICMGHQILSLA  279 (382)
T ss_pred             EEEcCCCCCh--hHHHHHHHHHHHHHhCCCCEEEEcHHHHHHHHH
Confidence            9999998732  123456777888877789999999999999976

>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase

Probab=97.63  E-value=0.00032  Score=54.05  Aligned_cols=76  Identities=18%  Similarity=0.118  Sum_probs=52.6

Q ss_pred             HHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCcccccCCh
Q 027785           25 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMND  104 (219)
Q Consensus        25 ~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~~~~~  104 (219)
                      ......|++.|.++.++..+...                            ..+.+  ...+|.||+.||.+...  +. 
T Consensus        12 ~~~~~~l~~~G~~~~~~~~~~~~----------------------------~~~~~--~~~~dgvil~gG~~~~~--~~-   58 (184)
T cd01743          12 YNLVQYLRELGAEVVVVRNDEIT----------------------------LEELE--LLNPDAIVISPGPGHPE--DA-   58 (184)
T ss_pred             HHHHHHHHHcCCceEEEeCCCCC----------------------------HHHHh--hcCCCEEEECCCCCCcc--cc-
Confidence            45667888899999888775421                            00112  24699999988876321  12 


Q ss_pred             HHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785          105 SVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus       105 ~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      .....+++...+++|+.+||-|.++|+.+
T Consensus        59 ~~~~~i~~~~~~~~PvlGIC~G~Qlla~~   87 (184)
T cd01743          59 GISLEIIRALAGKVPILGVCLGHQAIAEA   87 (184)
T ss_pred             hhHHHHHHHHhcCCCEEEECHhHHHHHHH
Confidence            24555556667889999999999999987

Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese

>PRK08857 para-aminobenzoate synthase component II; Provisional

Probab=97.61  E-value=0.00025  Score=55.14  Aligned_cols=86  Identities=17%  Similarity=0.274  Sum_probs=56.6

Q ss_pred             EEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEc
Q 027785           13 LLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIP   92 (219)
Q Consensus        13 il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liip   92 (219)
                      |++-|.++... ....+.|++.|+.+.++..+...                        +   ..+.+   .++|.+++-
T Consensus         2 il~id~~dsft-~~~~~~l~~~g~~~~~~~~~~~~------------------------~---~~~~~---~~~~~iils   50 (193)
T PRK08857          2 LLMIDNYDSFT-YNLYQYFCELGAQVKVVRNDEID------------------------I---DGIEA---LNPTHLVIS   50 (193)
T ss_pred             EEEEECCCCcH-HHHHHHHHHCCCcEEEEECCCCC------------------------H---HHHhh---CCCCEEEEe
Confidence            34444444222 34788899999999888655210                        0   01222   258999999


Q ss_pred             CCCC-cccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           93 GGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        93 GG~~-~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ||++ +.   +......+++. .+++.||.+||-|.++|+.+
T Consensus        51 gGp~~~~---~~~~~~~~i~~-~~~~~PiLGIClG~Qlia~a   88 (193)
T PRK08857         51 PGPCTPN---EAGISLQAIEH-FAGKLPILGVCLGHQAIAQV   88 (193)
T ss_pred             CCCCChH---HCcchHHHHHH-hcCCCCEEEEcHHHHHHHHH
Confidence            9875 32   23334567765 57899999999999999986

>CHL00101 trpG anthranilate synthase component 2

Probab=97.61  E-value=0.0002  Score=55.56  Aligned_cols=76  Identities=13%  Similarity=0.067  Sum_probs=51.3

Q ss_pred             HHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCcccccCCh
Q 027785           25 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMND  104 (219)
Q Consensus        25 ~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~~~~~  104 (219)
                      ..+.+.|+..|.++.++..+..                              .+.++....+|.|||.||++...  +..
T Consensus        13 ~~l~~~l~~~g~~~~v~~~~~~------------------------------~~~~~~~~~~dgiiisgGpg~~~--~~~   60 (190)
T CHL00101         13 YNLVQSLGELNSDVLVCRNDEI------------------------------DLSKIKNLNIRHIIISPGPGHPR--DSG   60 (190)
T ss_pred             HHHHHHHHhcCCCEEEEECCCC------------------------------CHHHHhhCCCCEEEECCCCCChH--HCc
Confidence            5577888888988877654421                              11122223699999999986321  122


Q ss_pred             HHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785          105 SVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus       105 ~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                       +...+.+.++.++|+.+||-|.++|+.+
T Consensus        61 -~~~~i~~~~~~~~PiLGIClG~Qlla~~   88 (190)
T CHL00101         61 -ISLDVISSYAPYIPILGVCLGHQSIGYL   88 (190)
T ss_pred             -chHHHHHHhcCCCcEEEEchhHHHHHHH
Confidence             2333444577899999999999999986

>PLN02335 anthranilate synthase

Probab=97.60  E-value=0.00036  Score=55.48  Aligned_cols=89  Identities=16%  Similarity=0.230  Sum_probs=58.7

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      .+||+|+  | +.+.--..+.+.|++.|.++.++..+..                              .++++....+|
T Consensus        18 ~~~ilvi--D-~~dsft~~i~~~L~~~g~~~~v~~~~~~------------------------------~~~~~~~~~~d   64 (222)
T PLN02335         18 NGPIIVI--D-NYDSFTYNLCQYMGELGCHFEVYRNDEL------------------------------TVEELKRKNPR   64 (222)
T ss_pred             cCcEEEE--E-CCCCHHHHHHHHHHHCCCcEEEEECCCC------------------------------CHHHHHhcCCC
Confidence            4577777  3 2222346688889999999999855321                              11111123689


Q ss_pred             EEEEcCCCC-cccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           88 GLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        88 ~liipGG~~-~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      .|||.||++ +..   .....+++++ ....+||.+||.|.++|+.+
T Consensus        65 ~iVisgGPg~p~d---~~~~~~~~~~-~~~~~PiLGIClG~QlLa~a  107 (222)
T PLN02335         65 GVLISPGPGTPQD---SGISLQTVLE-LGPLVPLFGVCMGLQCIGEA  107 (222)
T ss_pred             EEEEcCCCCChhh---ccchHHHHHH-hCCCCCEEEecHHHHHHHHH
Confidence            999999987 432   1233555654 45679999999999999975

>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.57  E-value=0.00029  Score=55.14  Aligned_cols=48  Identities=25%  Similarity=0.338  Sum_probs=34.6

Q ss_pred             CccEEEEcCCCCccc----ccCChHHHHHHHHH-HhcCCeEEEEehhHHHHHhC
Q 027785           85 KYDGLVIPGGRAPEY----LAMNDSVIDLVRKF-SNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        85 ~~D~liipGG~~~~~----~~~~~~l~~~l~~~-~~~~~~v~~ic~G~~~La~a  133 (219)
                      .+|.||+||+..+..    +... .+...|+++ +++++||.+||.|.++|+.+
T Consensus        37 ~~d~lilPG~g~~~~~~~~l~~~-~~~~~l~~~~~~~~~pvlGiC~G~Q~l~~~   89 (201)
T PRK13152         37 KADKLLLPGVGSFKEAMKNLKEL-GFIEALKEQVLVQKKPILGICLGMQLFLER   89 (201)
T ss_pred             CCCEEEECCCCchHHHHHHHHHc-CcHHHHHHHHHhCCCcEEEECHhHHHHhhc
Confidence            589999999865322    1112 234555554 58899999999999999987

>PRK00758 GMP synthase subunit A; Validated

Probab=97.57  E-value=0.00031  Score=54.12  Aligned_cols=43  Identities=28%  Similarity=0.568  Sum_probs=33.1

Q ss_pred             Cc-cEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           85 KY-DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        85 ~~-D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ++ |.|+++||....   ....+.+|++   +.++||.+||.|.++|+.+
T Consensus        40 ~~~dgivi~Gg~~~~---~~~~~~~~l~---~~~~PilGIC~G~Q~L~~a   83 (184)
T PRK00758         40 AFEDGLILSGGPDIE---RAGNCPEYLK---ELDVPILGICLGHQLIAKA   83 (184)
T ss_pred             hcCCEEEECCCCChh---hccccHHHHH---hCCCCEEEEeHHHHHHHHh
Confidence            45 999999987422   2334666776   4589999999999999987

>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade

Probab=97.56  E-value=0.00053  Score=63.22  Aligned_cols=89  Identities=21%  Similarity=0.226  Sum_probs=64.9

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      .+||+|+=+.   +.....+.+.|+..|+++.++.....                            ...++   ..++|
T Consensus       516 ~~~IlVID~g---ds~~~~l~~~L~~~G~~v~vv~~~~~----------------------------~~~~~---~~~~D  561 (717)
T TIGR01815       516 GRRILLVDHE---DSFVHTLANYLRQTGASVTTLRHSHA----------------------------EAAFD---ERRPD  561 (717)
T ss_pred             CCEEEEEECC---ChhHHHHHHHHHHCCCeEEEEECCCC----------------------------hhhhh---hcCCC
Confidence            5688888654   33467888999999999988754321                            00011   23699


Q ss_pred             EEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        88 ~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      .|||.||.+..   .+....++|++..++++||.+||.|.++|+.+
T Consensus       562 gLILsgGPGsp---~d~~~~~~I~~~~~~~iPvLGICLG~QlLa~a  604 (717)
T TIGR01815       562 LVVLSPGPGRP---ADFDVAGTIDAALARGLPVFGVCLGLQGMVEA  604 (717)
T ss_pred             EEEEcCCCCCc---hhcccHHHHHHHHHCCCCEEEECHHHHHHhhh
Confidence            99998887642   12345788899999999999999999999987

This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.

>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated

Probab=97.52  E-value=0.00035  Score=54.39  Aligned_cols=76  Identities=20%  Similarity=0.223  Sum_probs=51.9

Q ss_pred             HHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCcccccCCh
Q 027785           25 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMND  104 (219)
Q Consensus        25 ~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~~~~~  104 (219)
                      ..+.+.|++.|.++.++..+..                              .++++...+||.||+.||++...  +..
T Consensus        13 ~nl~~~l~~~g~~v~v~~~~~~------------------------------~~~~~~~~~~d~iIlsgGP~~p~--~~~   60 (195)
T PRK07649         13 FNLVQFLGELGQELVVKRNDEV------------------------------TISDIENMKPDFLMISPGPCSPN--EAG   60 (195)
T ss_pred             HHHHHHHHHCCCcEEEEeCCCC------------------------------CHHHHhhCCCCEEEECCCCCChH--hCC
Confidence            3478889999999988865421                              01111123689999999986321  122


Q ss_pred             HHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785          105 SVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus       105 ~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      .....++. ++.++|+.+||-|.++|+.+
T Consensus        61 ~~~~~i~~-~~~~~PvLGIClG~Qlla~~   88 (195)
T PRK07649         61 ISMEVIRY-FAGKIPIFGVCLGHQSIAQV   88 (195)
T ss_pred             CchHHHHH-hcCCCCEEEEcHHHHHHHHH
Confidence            34555554 45789999999999999986

>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]

Probab=97.50  E-value=0.00061  Score=58.44  Aligned_cols=91  Identities=21%  Similarity=0.301  Sum_probs=71.8

Q ss_pred             CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG   88 (219)
Q Consensus         9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~   88 (219)
                      .||+|..-.-|+. =+-.-++.|+.+|.++.++||-.+.                                ++ +++.|+
T Consensus       246 ~rIAVA~D~AF~F-yY~~nl~~Lr~~GAelv~FSPL~D~--------------------------------~l-P~~~D~  291 (451)
T COG1797         246 VRIAVARDAAFNF-YYPENLELLREAGAELVFFSPLADE--------------------------------EL-PPDVDA  291 (451)
T ss_pred             ceEEEEecchhcc-ccHHHHHHHHHCCCEEEEeCCcCCC--------------------------------CC-CCCCCE
Confidence            5888876554442 3445678899999999999985421                                11 236999


Q ss_pred             EEEcCCCC---cccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           89 LVIPGGRA---PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        89 liipGG~~---~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      |+||||.-   +..+..++.+.+.|+++++.|++|.+=|.|-..|.++
T Consensus       292 vYlgGGYPElfA~~L~~n~~~~~~i~~~~~~G~piyaECGGlMYL~~~  339 (451)
T COG1797         292 VYLGGGYPELFAEELSANESMRRAIKAFAAAGKPIYAECGGLMYLGES  339 (451)
T ss_pred             EEeCCCChHHHHHHHhhCHHHHHHHHHHHHcCCceEEecccceeehhh
Confidence            99999963   3457889999999999999999999999999999876

>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP)

Probab=97.50  E-value=0.00024  Score=50.18  Aligned_cols=87  Identities=21%  Similarity=0.282  Sum_probs=55.7

Q ss_pred             EEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEE
Q 027785           10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGL   89 (219)
Q Consensus        10 kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l   89 (219)
                      +|+|..-+|.+..-+......|+..- .++.++.+.                          | .+..++    ..+|.|
T Consensus         1 ~v~VY~g~g~~~~~~~~~~~~L~~~~-~v~~~~~~~--------------------------I-~~~~~~----~~ad~l   48 (114)
T cd03144           1 NVLVYNGPGASPGSLKHLAELLRLYL-AVSTVTADE--------------------------L-AVGPWE----SKTALL   48 (114)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHhhcc-ceeeecHHH--------------------------H-hcCchh----hCCCEE
Confidence            36677777877777777777776533 333333221                          0 011122    379999


Q ss_pred             EEcCCCCc---ccccCChHHHHHHHHHHhcCCeEEEEehhHHHH
Q 027785           90 VIPGGRAP---EYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL  130 (219)
Q Consensus        90 iipGG~~~---~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~L  130 (219)
                      |+|||...   ..+.. .. .+.|+++.++++++.+||.|+.+.
T Consensus        49 VlPGGa~~~~~~~L~~-~g-~~~i~~~v~~g~p~LGIClGAy~a   90 (114)
T cd03144          49 VVPGGADLPYCRALNG-KG-NRRIRNFVRNGGNYLGICAGAYLA   90 (114)
T ss_pred             EECCCChHHHHHHHHh-hC-cHHHHHHHHCCCcEEEEecCccce
Confidence            99997532   22322 23 788888889999999999999765

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.

>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit

Probab=97.49  E-value=0.00051  Score=58.30  Aligned_cols=85  Identities=24%  Similarity=0.312  Sum_probs=59.0

Q ss_pred             EEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEE
Q 027785           10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGL   89 (219)
Q Consensus        10 kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l   89 (219)
                      ||+++=+ |+.    ......|.+.|.++.++..+.                               +++++....+|.|
T Consensus       175 ~i~viD~-G~k----~ni~~~L~~~G~~v~vvp~~~-------------------------------~~~~i~~~~pDGI  218 (358)
T TIGR01368       175 RVVVIDF-GVK----QNILRRLVKRGCEVTVVPYDT-------------------------------DAEEIKKYNPDGI  218 (358)
T ss_pred             EEEEEeC-CcH----HHHHHHHHHCCCEEEEEcCCC-------------------------------CHHHHHhhCCCEE
Confidence            5555543 433    457778888898887774321                               1222221246999


Q ss_pred             EEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           90 VIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        90 iipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ||+||++..  ...+..+++++++.+ ++||.+||.|.++|+.+
T Consensus       219 iLSgGPgdp--~~~~~~i~~i~~~~~-~~PILGIClG~QlLa~a  259 (358)
T TIGR01368       219 FLSNGPGDP--AAVEPAIETIRKLLE-KIPIFGICLGHQLLALA  259 (358)
T ss_pred             EECCCCCCH--HHHHHHHHHHHHHHc-CCCEEEECHHHHHHHHH
Confidence            999998632  234667888998887 99999999999999976

This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.

>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed

Probab=97.49  E-value=0.00043  Score=58.66  Aligned_cols=75  Identities=23%  Similarity=0.321  Sum_probs=53.6

Q ss_pred             HHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCcccccCCh
Q 027785           25 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMND  104 (219)
Q Consensus        25 ~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~~~~~  104 (219)
                      ....+.|.+.|..+.++..+..                               .+++....+|.||++||++..  .+..
T Consensus       179 ~ni~~~L~~~G~~v~vvp~~~~-------------------------------~~~i~~~~~DGIiLsgGPgdp--~~~~  225 (354)
T PRK12838        179 KSILRSLSKRGCKVTVLPYDTS-------------------------------LEEIKNLNPDGIVLSNGPGDP--KELQ  225 (354)
T ss_pred             HHHHHHHHHCCCeEEEEECCCC-------------------------------HHHHhhcCCCEEEEcCCCCCh--HHhH
Confidence            5567777788888877744321                               112212369999999998631  2345


Q ss_pred             HHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785          105 SVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus       105 ~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ...++++++.++ +|+.+||.|.++|+.+
T Consensus       226 ~~~~~i~~~~~~-~PvlGIClG~QlLa~a  253 (354)
T PRK12838        226 PYLPEIKKLISS-YPILGICLGHQLIALA  253 (354)
T ss_pred             HHHHHHHHHhcC-CCEEEECHHHHHHHHH
Confidence            677888888877 9999999999999976

>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional

Probab=97.48  E-value=0.00035  Score=60.75  Aligned_cols=48  Identities=27%  Similarity=0.495  Sum_probs=39.3

Q ss_pred             CccEEEEcCCCCc---ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           85 KYDGLVIPGGRAP---EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        85 ~~D~liipGG~~~---~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ++|+|++|||...   ..+..+... +-|+++.++|++|.++|.|-++|++.
T Consensus       274 ~~D~l~lpGG~~e~~~~~L~~n~~~-~~i~~~~~~G~pi~aeCGG~q~L~~~  324 (433)
T PRK13896        274 DCDGVYLPGGYPELHADALADSPAL-DELADRAADGLPVLGECGGLMALAES  324 (433)
T ss_pred             CCCEEEeCCCchhhHHHHHHhCCcH-HHHHHHHHCCCcEEEEehHHHHhhcc
Confidence            7899999999742   224444445 88999999999999999999999985

>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.47  E-value=0.0003  Score=54.51  Aligned_cols=82  Identities=15%  Similarity=0.188  Sum_probs=55.4

Q ss_pred             EEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEE
Q 027785           11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLV   90 (219)
Q Consensus        11 v~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~li   90 (219)
                      |+|+=|..-   .+......|++.|.++.++...                                  +++  .++|.||
T Consensus         2 i~iidyg~g---N~~s~~~al~~~g~~~~~v~~~----------------------------------~~l--~~~D~lI   42 (192)
T PRK13142          2 IVIVDYGLG---NISNVKRAIEHLGYEVVVSNTS----------------------------------KII--DQAETII   42 (192)
T ss_pred             EEEEEcCCc---cHHHHHHHHHHcCCCEEEEeCH----------------------------------HHh--ccCCEEE
Confidence            677766544   4456667777788877776422                                  112  3689999


Q ss_pred             EcCCCCccc---ccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           91 IPGGRAPEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        91 ipGG~~~~~---~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      +||+.....   ..+...+.+.|++  ..++|+.+||.|-++|++.
T Consensus        43 lPG~g~~~~~~~~L~~~gl~~~i~~--~~g~PvlGIClGmQlL~~~   86 (192)
T PRK13142         43 LPGVGHFKDAMSEIKRLNLNAILAK--NTDKKMIGICLGMQLMYEH   86 (192)
T ss_pred             ECCCCCHHHHHHHHHHCCcHHHHHH--hCCCeEEEECHHHHHHhhh
Confidence            999854221   1112236777777  5689999999999999976

>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.43  E-value=0.00053  Score=54.04  Aligned_cols=48  Identities=27%  Similarity=0.450  Sum_probs=38.8

Q ss_pred             CccEEEEcCCCCcc----cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           85 KYDGLVIPGGRAPE----YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        85 ~~D~liipGG~~~~----~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ++|.||+||+....    .+. ...+.++|+++.++++|+.+||.|.++|+++
T Consensus        37 ~~d~iIlPG~g~~~~~~~~l~-~~gl~~~i~~~~~~~~pilGiC~G~Q~l~~~   88 (210)
T PRK14004         37 NSKALILPGDGHFDKAMENLN-STGLRSTIDKHVESGKPLFGICIGFQILFES   88 (210)
T ss_pred             cCCEEEECCCCchHHHHHHHH-HcCcHHHHHHHHHcCCCEEEECHhHHHHHHh
Confidence            78999999986421    122 2358889999999999999999999999985

>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E

Probab=97.33  E-value=0.00068  Score=53.49  Aligned_cols=49  Identities=10%  Similarity=0.102  Sum_probs=39.0

Q ss_pred             CCccEEEEcCCCCc---ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           84 TKYDGLVIPGGRAP---EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        84 ~~~D~liipGG~~~---~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ..+|+|++|||.-.   ..+. ...+.+.|++.+++|++++++|.|+.++...
T Consensus        79 ~~ad~I~l~GG~~~~~~~~l~-~~~l~~~l~~~~~~g~~i~G~SAGa~i~~~~  130 (212)
T cd03146          79 LEADVIYVGGGNTFNLLAQWR-EHGLDAILKAALERGVVYIGWSAGSNCWFPS  130 (212)
T ss_pred             hcCCEEEECCchHHHHHHHHH-HcCHHHHHHHHHHCCCEEEEECHhHHhhCCC
Confidence            47999999998532   1222 2357888999899999999999999999984

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.

>PRK06278 cobyrinic acid a,c-diamide synthase; Validated

Probab=97.22  E-value=0.00087  Score=59.01  Aligned_cols=45  Identities=36%  Similarity=0.597  Sum_probs=34.0

Q ss_pred             CCccEEEEcCCCCc--ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           84 TKYDGLVIPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        84 ~~~D~liipGG~~~--~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      .++|+||+|||.-.  ..+  ...+.+.|+++   |+||.+||.|-++|++.
T Consensus        35 ~~~D~lILPGG~~~~~~~l--~~~l~~~i~~~---g~pvlGICgG~QmLg~~   81 (476)
T PRK06278         35 KDLDGLIIPGGSLVESGSL--TDELKKEILNF---DGYIIGICSGFQILSEK   81 (476)
T ss_pred             ccCCEEEECCCchhhcchH--HHHHHHHHHHc---CCeEEEEcHHHHhcccc
Confidence            47999999998421  111  24566666666   99999999999999987

>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=97.20  E-value=0.0024  Score=49.00  Aligned_cols=86  Identities=22%  Similarity=0.354  Sum_probs=61.4

Q ss_pred             HHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCcccccCCh
Q 027785           25 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMND  104 (219)
Q Consensus        25 ~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~~~~~  104 (219)
                      ..+++.|+..|.++.++..+.-                              +...++..++|+|+|..|+|...  +..
T Consensus        15 yNLv~yl~~lg~~v~V~rnd~~------------------------------~~~~~~~~~pd~iviSPGPG~P~--d~G   62 (191)
T COG0512          15 YNLVQYLRELGAEVTVVRNDDI------------------------------SLELIEALKPDAIVISPGPGTPK--DAG   62 (191)
T ss_pred             HHHHHHHHHcCCceEEEECCcc------------------------------CHHHHhhcCCCEEEEcCCCCChH--Hcc
Confidence            5678889998988888765521                              11122334689999988887432  455


Q ss_pred             HHHHHHHHHHhcCCeEEEEehhHHHHHhC---------cccCCceEee
Q 027785          105 SVIDLVRKFSNSGKTIASICHGQLILAAA---------DVVKGRKCTA  143 (219)
Q Consensus       105 ~l~~~l~~~~~~~~~v~~ic~G~~~La~a---------GlL~g~~~t~  143 (219)
                      ...+.|+++ ....||.+||.|-+.|+.+         ....||.-..
T Consensus        63 ~~~~~i~~~-~~~~PiLGVCLGHQai~~~fGg~V~~a~~~~HGK~s~i  109 (191)
T COG0512          63 ISLELIRRF-AGRIPILGVCLGHQAIAEAFGGKVVRAKEPMHGKTSII  109 (191)
T ss_pred             hHHHHHHHh-cCCCCEEEECccHHHHHHHhCCEEEecCCCcCCeeeee
Confidence            688888888 7778999999999999987         2566665533

>PRK05282 (alpha)-aspartyl dipeptidase; Validated

Probab=97.14  E-value=0.0017  Score=51.88  Aligned_cols=51  Identities=10%  Similarity=0.195  Sum_probs=40.1

Q ss_pred             CCccEEEEcCCCCcc--cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCc
Q 027785           84 TKYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD  134 (219)
Q Consensus        84 ~~~D~liipGG~~~~--~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aG  134 (219)
                      ...|+|+|+||....  .......+.+.|++.+++|+++++.|+|+.+++...
T Consensus        78 ~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGAii~~~~i  130 (233)
T PRK05282         78 ENAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSAGANVAGPTI  130 (233)
T ss_pred             hcCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHHHhhhccc
Confidence            478999999997532  122344688889999999999999999999888653

>TIGR00313 cobQ cobyric acid synthase CobQ

Probab=97.13  E-value=0.0013  Score=58.09  Aligned_cols=49  Identities=24%  Similarity=0.529  Sum_probs=40.3

Q ss_pred             CCccEEEEcCCCCcc---cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHh
Q 027785           84 TKYDGLVIPGGRAPE---YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA  132 (219)
Q Consensus        84 ~~~D~liipGG~~~~---~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~  132 (219)
                      +++|+|++|||....   ....+..+.+.|+++.++|++|.++|.|-++|++
T Consensus       283 ~~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G~pvlgiCgG~q~Lg~  334 (475)
T TIGR00313       283 TGCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGGIVIGICGGYQMLGK  334 (475)
T ss_pred             ccCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcCCcEEEEcHHHHHhhh
Confidence            478999999997421   1224556889999999999999999999999998

>PLN02347 GMP synthetase

Probab=97.11  E-value=0.0027  Score=56.80  Aligned_cols=90  Identities=16%  Similarity=0.169  Sum_probs=56.2

Q ss_pred             EEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEE
Q 027785           10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGL   89 (219)
Q Consensus        10 kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l   89 (219)
                      +|+|+=+-.   .-...+...+++.|..+.++..+..                               .+++....+|.|
T Consensus        12 ~IlIID~G~---~~t~~I~r~lrelgv~~~v~p~~~~-------------------------------~~~i~~~~~dgI   57 (536)
T PLN02347         12 VVLILDYGS---QYTHLITRRVRELGVYSLLLSGTAS-------------------------------LDRIASLNPRVV   57 (536)
T ss_pred             EEEEEECCC---cHHHHHHHHHHHCCCeEEEEECCCC-------------------------------HHHHhcCCCCEE
Confidence            566654432   2235567788888988777644321                               222222368999


Q ss_pred             EEcCCCCcccccCChHHH-HHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           90 VIPGGRAPEYLAMNDSVI-DLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        90 iipGG~~~~~~~~~~~l~-~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      |++||++.......+.+. .+++...+.+.||.+||.|.++|+.+
T Consensus        58 ILsGGP~sv~~~~~p~~~~~i~~~~~~~~iPILGIClG~QlLa~a  102 (536)
T PLN02347         58 ILSGGPHSVHVEGAPTVPEGFFDYCRERGVPVLGICYGMQLIVQK  102 (536)
T ss_pred             EECCCCCcccccCCchhhHHHHHHHHhcCCcEEEECHHHHHHHHH
Confidence            999997532222223222 33344445789999999999999987

>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown

Probab=96.93  E-value=0.0053  Score=52.23  Aligned_cols=93  Identities=22%  Similarity=0.331  Sum_probs=66.5

Q ss_pred             CEEEEEecCCCCchhhHHHHHHHHhC---CCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCC
Q 027785            9 RSVLLLCGDYMEDYEAMVPFQALLAF---GVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTK   85 (219)
Q Consensus         9 ~kv~il~~~g~~~~e~~~~~~~l~~a---g~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~   85 (219)
                      ++|+|.--+|.....+...+..|+..   .|.|..++.+.                          |. ...+.    ..
T Consensus         1 mnVlVY~G~G~~~~sv~~~~~~Lr~~l~p~y~V~~v~~~~--------------------------l~-~~pw~----~~   49 (367)
T PF09825_consen    1 MNVLVYNGPGTSPESVRHTLESLRRLLSPHYAVIPVTADE--------------------------LL-NEPWQ----SK   49 (367)
T ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEeCHHH--------------------------hh-cCccc----cC
Confidence            37899999999998998999989853   46666664321                          11 11122    36


Q ss_pred             ccEEEEcCCCCcccc-cCChHHHHHHHHHHhcCCeEEEEehhHHHHHh
Q 027785           86 YDGLVIPGGRAPEYL-AMNDSVIDLVRKFSNSGKTIASICHGQLILAA  132 (219)
Q Consensus        86 ~D~liipGG~~~~~~-~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~  132 (219)
                      ++++|+|||..-... .-++.-.+.||++.++|..-.++|+|+.+-.+
T Consensus        50 ~~LlV~PGG~d~~y~~~l~~~g~~~Ir~fV~~GG~YlGiCAGaY~as~   97 (367)
T PF09825_consen   50 CALLVMPGGADLPYCRSLNGEGNRRIRQFVENGGGYLGICAGAYYASS   97 (367)
T ss_pred             CcEEEECCCcchHHHHhhChHHHHHHHHHHHcCCcEEEECcchhhhcc
Confidence            899999999753221 22456688899999999999999999977664

It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.

>PRK00074 guaA GMP synthase; Reviewed

Probab=96.93  E-value=0.0052  Score=54.85  Aligned_cols=88  Identities=18%  Similarity=0.219  Sum_probs=56.7

Q ss_pred             CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG   88 (219)
Q Consensus         9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~   88 (219)
                      .+|+||=+ |.+  -...+...+++.|...+++..+..                               .++++..++|.
T Consensus         4 ~~i~vlD~-Gsq--~~~li~r~lrelg~~~~v~p~~~~-------------------------------~~~l~~~~~dg   49 (511)
T PRK00074          4 DKILILDF-GSQ--YTQLIARRVRELGVYSEIVPYDIS-------------------------------AEEIRAFNPKG   49 (511)
T ss_pred             CEEEEEEC-CCC--cHHHHHHHHHHCCCeEEEEECCCC-------------------------------HHHHhccCCCE
Confidence            46887766 333  345567888899987777743321                               11222125799


Q ss_pred             EEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           89 LVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        89 liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ||++||...-.-...+.+.   +...+.++||.+||.|.++|+.+
T Consensus        50 IIlsGGp~sv~~~~~p~~~---~~i~~~~~PvLGIC~G~QlLa~~   91 (511)
T PRK00074         50 IILSGGPASVYEEGAPRAD---PEIFELGVPVLGICYGMQLMAHQ   91 (511)
T ss_pred             EEECCCCcccccCCCcccc---HHHHhCCCCEEEECHHHHHHHHH
Confidence            9999997532111223332   44566799999999999999986

>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase

Probab=96.91  E-value=0.0021  Score=51.52  Aligned_cols=47  Identities=19%  Similarity=0.326  Sum_probs=38.7

Q ss_pred             CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ..+|.|+++||.+...   .+....+++...+.++|+.+||.|.++|+.+
T Consensus        54 ~~~dgivl~GG~~~~~---~~~~~~~i~~~~~~~~PvlGIClG~Q~l~~~  100 (235)
T cd01746          54 KGADGILVPGGFGIRG---VEGKILAIKYARENNIPFLGICLGMQLAVIE  100 (235)
T ss_pred             ccCCEEEECCCCCCcc---hhhHHHHHHHHHHCCceEEEEEhHHHHHHHH
Confidence            4799999999986432   3466788999999999999999999988654

Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th

>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)

Probab=96.84  E-value=0.0046  Score=53.34  Aligned_cols=75  Identities=17%  Similarity=0.279  Sum_probs=52.6

Q ss_pred             HHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCcccccCCh
Q 027785           25 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMND  104 (219)
Q Consensus        25 ~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~~~~~  104 (219)
                      ..++..|++.|.++.++..+.                               +.+++...++|.||+.||+|..  ...+
T Consensus       252 ~nIlr~L~~~G~~v~VvP~~~-------------------------------~~~ei~~~~pDGIiLSnGPGDP--~~~~  298 (415)
T PLN02771        252 HNILRRLASYGCKITVVPSTW-------------------------------PASEALKMKPDGVLFSNGPGDP--SAVP  298 (415)
T ss_pred             HHHHHHHHHcCCeEEEECCCC-------------------------------CHHHHhhcCCCEEEEcCCCCCh--hHhh
Confidence            566677777788777774432                               1122222369999999998632  2345


Q ss_pred             HHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785          105 SVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus       105 ~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ...+.+++.. .++||.+||.|.++|+.+
T Consensus       299 ~~ie~ik~l~-~~iPIlGICLGhQlLa~A  326 (415)
T PLN02771        299 YAVETVKELL-GKVPVFGICMGHQLLGQA  326 (415)
T ss_pred             HHHHHHHHHH-hCCCEEEEcHHHHHHHHh
Confidence            6777777766 478999999999999977

>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=96.77  E-value=0.0052  Score=55.03  Aligned_cols=78  Identities=13%  Similarity=0.048  Sum_probs=51.1

Q ss_pred             HHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCc-ccccCC
Q 027785           25 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAP-EYLAMN  103 (219)
Q Consensus        25 ~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~-~~~~~~  103 (219)
                      ..+.+.|+..|.++.+++.+..                           .+..++++...++|.|||-||++. ......
T Consensus        15 ~nl~~~lr~~g~~v~V~~~~~~---------------------------~~~~~~~l~~~~~~~IIlSpGPg~p~d~~~~   67 (531)
T PRK09522         15 YNLADQLRSNGHNVVIYRNHIP---------------------------AQTLIERLATMSNPVLMLSPGPGVPSEAGCM   67 (531)
T ss_pred             HHHHHHHHHCCCCEEEEECCCC---------------------------CccCHHHHHhcCcCEEEEcCCCCChhhCCCC
Confidence            5578888999998888875421                           011122222235889999999873 322222


Q ss_pred             hHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785          104 DSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus       104 ~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      +    ++.+....++||.+||.|.++|+.+
T Consensus        68 ~----~i~~~~~~~iPILGIClG~QlLa~a   93 (531)
T PRK09522         68 P----ELLTRLRGKLPIIGICLGHQAIVEA   93 (531)
T ss_pred             H----HHHHHHhcCCCEEEEcHHHHHHHHh
Confidence            2    3333345689999999999999987

>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]

Probab=96.70  E-value=0.0033  Score=46.98  Aligned_cols=50  Identities=26%  Similarity=0.482  Sum_probs=38.9

Q ss_pred             CCCccEEEEcCCCCc--ccccCChHHHHHHHHHHhcC-CeEEEEehhHHHHHh
Q 027785           83 PTKYDGLVIPGGRAP--EYLAMNDSVIDLVRKFSNSG-KTIASICHGQLILAA  132 (219)
Q Consensus        83 ~~~~D~liipGG~~~--~~~~~~~~l~~~l~~~~~~~-~~v~~ic~G~~~La~  132 (219)
                      ..+.|+||||||...  ..+..-..+.+-|.++..++ +++-+.|+|..+|.+
T Consensus        54 ~aq~DaLIIPGGEST~mslia~~tgL~d~L~~fVhn~~k~~WGTCAGmI~LS~  106 (226)
T KOG3210|consen   54 LAQCDALIIPGGESTAMSLIAERTGLYDDLYAFVHNPSKVTWGTCAGMIYLSQ  106 (226)
T ss_pred             HhhCCEEEecCCchhHHHHHHhhhhhHHHHHHHhcCCCccceeechhhhhhhh
Confidence            358999999999763  22333344888888888877 999999999998875

>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional

Probab=96.58  E-value=0.0037  Score=50.74  Aligned_cols=49  Identities=24%  Similarity=0.340  Sum_probs=38.4

Q ss_pred             CccEEEEcCCC-Ccc--------c-----ccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           85 KYDGLVIPGGR-APE--------Y-----LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        85 ~~D~liipGG~-~~~--------~-----~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      .+|.|+++||. ...        .     ..++....++|+.+.++++||.+||-|.++|+.+
T Consensus        61 ~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Qllnva  123 (254)
T PRK11366         61 KLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQELVVA  123 (254)
T ss_pred             hCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHH
Confidence            59999999984 221        0     1122456899999999999999999999999977

>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=96.48  E-value=0.008  Score=54.01  Aligned_cols=47  Identities=17%  Similarity=0.273  Sum_probs=35.8

Q ss_pred             CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ..+|.||+.||++...  +.....++++. ...+.||.+||-|.++|+.+
T Consensus        43 ~~~d~vIlsgGP~~p~--~~~~~~~li~~-~~~~~PvLGIClG~QlLa~a   89 (534)
T PRK14607         43 LNPSHIVISPGPGRPE--EAGISVEVIRH-FSGKVPILGVCLGHQAIGYA   89 (534)
T ss_pred             cCCCEEEECCCCCChh--hCCccHHHHHH-hhcCCCEEEEcHHHHHHHHH
Confidence            3689999999987321  22334667776 46789999999999999986

>PRK06186 hypothetical protein; Validated

Probab=96.46  E-value=0.0052  Score=48.88  Aligned_cols=48  Identities=21%  Similarity=0.297  Sum_probs=39.9

Q ss_pred             CCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHH--HHhC
Q 027785           83 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI--LAAA  133 (219)
Q Consensus        83 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~--La~a  133 (219)
                      ..++|.|+||||+|.+   .-+--+..++.+.+++.|+.+||-|.++  +..+
T Consensus        51 l~~~dgilvpgGfg~r---g~~Gki~ai~~Are~~iP~LGIClGmQ~avIe~a  100 (229)
T PRK06186         51 LAGFDGIWCVPGSPYR---NDDGALTAIRFARENGIPFLGTCGGFQHALLEYA  100 (229)
T ss_pred             HhhCCeeEeCCCCCcc---cHhHHHHHHHHHHHcCCCeEeechhhHHHHHHHH
Confidence            3579999999999853   4567788899999999999999999984  5544

>PRK05368 homoserine O-succinyltransferase; Provisional

Probab=96.33  E-value=0.028  Score=46.67  Aligned_cols=57  Identities=21%  Similarity=0.305  Sum_probs=38.2

Q ss_pred             CccCCCCCCccEEEEcCCCCc-ccccC---ChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           77 TFDEIDPTKYDGLVIPGGRAP-EYLAM---NDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        77 ~~~~~~~~~~D~liipGG~~~-~~~~~---~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      +++++....||.+||.|..-. ....+   -+++.+++....++.+++.+||-|+++++.+
T Consensus        91 ~~~~i~~~~~DG~IITGAp~e~~~fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a~a  151 (302)
T PRK05368         91 TFEDIKDEKFDGLIITGAPVEQLPFEDVDYWDELKEILDWAKTHVTSTLFICWAAQAALYH  151 (302)
T ss_pred             CHHHhccCCCCEEEEcCCCCCCccCCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHHHH
Confidence            455665578999999998632 11111   1234444444445689999999999998865

>PRK05380 pyrG CTP synthetase; Validated

Probab=96.32  E-value=0.007  Score=53.73  Aligned_cols=46  Identities=22%  Similarity=0.366  Sum_probs=38.5

Q ss_pred             CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHh
Q 027785           84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA  132 (219)
Q Consensus        84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~  132 (219)
                      ..+|.|++|||+|...   .+..+.+++.+.++++|+.+||.|.++++-
T Consensus       342 ~~~DGIIlpGGfG~~~---~~g~i~~i~~a~e~~iPiLGIClGmQll~v  387 (533)
T PRK05380        342 KGVDGILVPGGFGERG---IEGKILAIRYARENNIPFLGICLGMQLAVI  387 (533)
T ss_pred             hcCCEEEecCCCCccc---cccHHHHHHHHHHCCCcEEEEchHHHHHHH
Confidence            5799999999987532   345678899999999999999999987775

>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase

Probab=95.99  E-value=0.02  Score=46.99  Aligned_cols=50  Identities=16%  Similarity=0.282  Sum_probs=32.0

Q ss_pred             CCccEEEEcCCCC-cccccCChHHHHHHHHHH---hcC--CeEEEEehhHHHHHhC
Q 027785           84 TKYDGLVIPGGRA-PEYLAMNDSVIDLVRKFS---NSG--KTIASICHGQLILAAA  133 (219)
Q Consensus        84 ~~~D~liipGG~~-~~~~~~~~~l~~~l~~~~---~~~--~~v~~ic~G~~~La~a  133 (219)
                      ..+|.|++|||.. .......+....+++...   ++|  .||.++|.|..+|+.+
T Consensus        53 ~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiClG~QlL~~~  108 (273)
T cd01747          53 KSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCLGFELLTYL  108 (273)
T ss_pred             hhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcEEEEcHHHHHHHHH
Confidence            4689999999863 221112233334444444   444  7999999999988873

Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade

Probab=95.89  E-value=0.066  Score=50.03  Aligned_cols=47  Identities=19%  Similarity=0.323  Sum_probs=34.0

Q ss_pred             CCccEEEEcCCCCcccccCChHHHHHHHHHHhc----CCeEEEEehhHHHHHhC
Q 027785           84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNS----GKTIASICHGQLILAAA  133 (219)
Q Consensus        84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~----~~~v~~ic~G~~~La~a  133 (219)
                      ..||.|||.||+|...   ++.-..++++..+.    ..||.+||.|.++|+.+
T Consensus        52 ~~~D~VVIspGPG~p~---~~~~~~i~~~i~~~~~~~~iPvLGIClG~QlLa~a  102 (742)
T TIGR01823        52 PLFDAIVVGPGPGNPN---NAQDMGIISELWELANLDEVPVLGICLGFQSLCLA  102 (742)
T ss_pred             cCCCEEEECCCCCCcc---chhhhHHHHHHHHhcccCCCcEEEEchhhHHHHhh
Confidence            4799999999987421   22334455555543    49999999999999987

This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.

>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]

Probab=95.87  E-value=0.027  Score=47.25  Aligned_cols=55  Identities=27%  Similarity=0.415  Sum_probs=44.1

Q ss_pred             CccCCCCCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           77 TFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        77 ~~~~~~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      +.+++-.-++|.||+.-|+|-.  ..-+..++.|++..+..+|+.+||.|-++||-|
T Consensus       212 ~~eeIl~~~pDGiflSNGPGDP--~~~~~~i~~ik~l~~~~iPifGICLGHQllalA  266 (368)
T COG0505         212 SAEEILALNPDGIFLSNGPGDP--APLDYAIETIKELLGTKIPIFGICLGHQLLALA  266 (368)
T ss_pred             CHHHHHhhCCCEEEEeCCCCCh--hHHHHHHHHHHHHhccCCCeEEEcHHHHHHHHh
Confidence            3444333579999999988732  345778999999999999999999999999976

>PLN02327 CTP synthase

Probab=95.67  E-value=0.021  Score=50.95  Aligned_cols=48  Identities=21%  Similarity=0.285  Sum_probs=37.3

Q ss_pred             CCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           83 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        83 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ..++|.|++|||+|...   ....+..++.+.++++|+.+||.|.++++-.
T Consensus       360 L~~~DGIvvpGGfG~~~---~~G~i~ai~~are~~iP~LGIClGmQl~vie  407 (557)
T PLN02327        360 LKGADGILVPGGFGDRG---VEGKILAAKYARENKVPYLGICLGMQIAVIE  407 (557)
T ss_pred             hccCCEEEeCCCCCCcc---cccHHHHHHHHHHcCCCEEEEcHHHHHHHHH
Confidence            35899999999987532   2344667787888999999999999877643

>COG2071 Predicted glutamine amidotransferases [General function prediction only]

Probab=95.63  E-value=0.026  Score=44.93  Aligned_cols=50  Identities=30%  Similarity=0.507  Sum_probs=39.8

Q ss_pred             CCccEEEEcCCCC--cc-------------cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           84 TKYDGLVIPGGRA--PE-------------YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        84 ~~~D~liipGG~~--~~-------------~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      +..|.|+++||..  +.             +..++..-+..|+++.++++||.+||=|.++|.-+
T Consensus        59 ~~iDgliltGg~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICRG~QllNVa  123 (243)
T COG2071          59 DLIDGLILTGGSNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPILGICRGLQLLNVA  123 (243)
T ss_pred             hhccEEEecCCCcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCCCEEEEccchHHHHHH
Confidence            4689999999932  21             12345567899999999999999999999999855

>TIGR00337 PyrG CTP synthase

Probab=95.45  E-value=0.026  Score=50.15  Aligned_cols=47  Identities=19%  Similarity=0.349  Sum_probs=36.9

Q ss_pred             CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      .++|.|++|||++...   .+..+..++.+.+++.|+.+||.|.++++.+
T Consensus       342 ~~~dGIiLpGG~G~~~---~~g~i~ai~~a~e~~iP~LGIClG~Qll~i~  388 (525)
T TIGR00337       342 KGVDGILVPGGFGERG---VEGKILAIKYARENNIPFLGICLGMQLAVIE  388 (525)
T ss_pred             cCCCEEEeCCCCCChh---hcChHHHHHHHHHcCCCEEEEcHHHHHHHHH
Confidence            4699999999987532   3445567787888999999999999877643

CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).

>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]

Probab=95.31  E-value=0.12  Score=40.00  Aligned_cols=50  Identities=32%  Similarity=0.594  Sum_probs=38.6

Q ss_pred             CCCccEEEEcCCCCcccccCC---hHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           83 PTKYDGLVIPGGRAPEYLAMN---DSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        83 ~~~~D~liipGG~~~~~~~~~---~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      .+.||.++|.|...... .+.   -.|..++++.....+.|++||-|-+++|++
T Consensus        57 l~ky~gfvIsGS~~dAf-~d~dWI~KLcs~~kkld~mkkkvlGICFGHQiiara  109 (245)
T KOG3179|consen   57 LEKYDGFVISGSKHDAF-SDADWIKKLCSFVKKLDFMKKKVLGICFGHQIIARA  109 (245)
T ss_pred             hhhhceEEEeCCccccc-ccchHHHHHHHHHHHHHhhccceEEEeccHHHHHHh
Confidence            35799999999764221 222   357778888888889999999999999987

>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]

Probab=95.18  E-value=0.073  Score=46.71  Aligned_cols=50  Identities=18%  Similarity=0.411  Sum_probs=34.8

Q ss_pred             CCccEEEEcCCCCc-ccc--cCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           84 TKYDGLVIPGGRAP-EYL--AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        84 ~~~D~liipGG~~~-~~~--~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      .++|++++||.... .++  .+...+-.-|.++.+++.+|.+||.|-++|.+.
T Consensus       289 ~~~dlvIlPGsk~t~~DL~~lr~~g~d~~i~~~~~~~~~viGICGG~QmLG~~  341 (486)
T COG1492         289 RDADLVILPGSKNTIADLKILREGGMDEKILEYARKGGDVIGICGGYQMLGRR  341 (486)
T ss_pred             CCCCEEEeCCCcccHHHHHHHHHcCHHHHHHHHHhCCCCEEEEcchHHhhhhh
Confidence            35999999998653 111  122233345566667799999999999999975

>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins

Probab=94.97  E-value=0.11  Score=40.89  Aligned_cols=50  Identities=18%  Similarity=0.356  Sum_probs=36.8

Q ss_pred             CCccEEEEcCCCCccc--ccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           84 TKYDGLVIPGGRAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        84 ~~~D~liipGG~~~~~--~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ...|+|+++||.-...  ......+.+-|++.+.+|.++++.|+|+.++...
T Consensus        79 ~~ad~I~~~GG~~~~~~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA~~~~~~  130 (210)
T cd03129          79 LEADGIFVGGGNQLRLLSVLRETPLLDAILKRVARGVVIGGTSAGAAVMGET  130 (210)
T ss_pred             hhCCEEEEcCCcHHHHHHHHHhCChHHHHHHHHHcCCeEEEcCHHHHHhhhc
Confidence            4799999999964321  1222335555666677999999999999999984

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from

>PF13587 DJ-1_PfpI_N: N-terminal domain of DJ-1_PfpI family; PDB: 1U9C_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A

Probab=94.83  E-value=0.047  Score=30.59  Aligned_cols=27  Identities=15%  Similarity=0.209  Sum_probs=20.8

Q ss_pred             CEEEEEecC-----------CCCchhhHHHHHHHHhCC
Q 027785            9 RSVLLLCGD-----------YMEDYEAMVPFQALLAFG   35 (219)
Q Consensus         9 ~kv~il~~~-----------g~~~~e~~~~~~~l~~ag   35 (219)
                      |||+|++..           |+...|++.|+++|.++|
T Consensus         1 kkiLiV~Ts~~~~~~~~~~TG~wl~E~~hpy~~f~~aG   38 (38)
T PF13587_consen    1 KKILIVVTSHDKLGDTGRPTGFWLSELAHPYYVFTDAG   38 (38)
T ss_dssp             SEEEEEE---SEECTTTEE--B-HHHHHHHHHHHHHTT
T ss_pred             CeEEEEEcCcccccCCCCcceeccHHHhhHHHHHHHCc
Confidence            588888842           888999999999999986

>PLN02889 oxo-acid-lyase/anthranilate synthase

Probab=94.78  E-value=0.11  Score=49.27  Aligned_cols=48  Identities=21%  Similarity=0.318  Sum_probs=33.6

Q ss_pred             CCccEEEEcCCCCc-ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           84 TKYDGLVIPGGRAP-EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        84 ~~~D~liipGG~~~-~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ..||.|||-+|+|. ....+.....++|++.  .+.||.+||.|.++|+.+
T Consensus       130 ~~~d~IVlSPGPG~P~~~~d~Gi~~~~i~~~--~~iPILGICLGhQ~i~~~  178 (918)
T PLN02889        130 KAFDNIVISPGPGSPTCPADIGICLRLLLEC--RDIPILGVCLGHQALGYV  178 (918)
T ss_pred             cCCCEEEECCCCCCccchHHHHHHHHHHHHh--CCCcEEEEcHHHHHHHHh
Confidence            36899999999873 2111112235556543  479999999999999986

>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.42  E-value=0.015  Score=43.43  Aligned_cols=80  Identities=18%  Similarity=0.250  Sum_probs=52.4

Q ss_pred             HHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCccc--ccCC
Q 027785           26 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEY--LAMN  103 (219)
Q Consensus        26 ~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~--~~~~  103 (219)
                      ...++|++.|++++.+......                          .....+.+  ...|+|++.||.-...  ....
T Consensus         4 ~~~~~f~~~g~~v~~l~~~~~~--------------------------~~~~~~~i--~~ad~I~~~GG~~~~l~~~l~~   55 (154)
T PF03575_consen    4 KFRKAFRKLGFEVDQLDLSDRN--------------------------DADILEAI--READAIFLGGGDTFRLLRQLKE   55 (154)
T ss_dssp             HHHHHHHHCT-EEEECCCTSCG--------------------------HHHHHHHH--HHSSEEEE--S-HHHHHHHHHH
T ss_pred             HHHHHHHHCCCEEEEEeccCCC--------------------------hHHHHHHH--HhCCEEEECCCCHHHHHHHHHh
Confidence            4578899999988777554310                          00111222  3699999999964321  2334


Q ss_pred             hHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785          104 DSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus       104 ~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ..+.+.|++.+++|+++++..+|+.++...
T Consensus        56 t~l~~~i~~~~~~G~vi~G~SAGA~i~~~~   85 (154)
T PF03575_consen   56 TGLDEAIREAYRKGGVIIGTSAGAMILGPS   85 (154)
T ss_dssp             TTHHHHHHHHHHTTSEEEEETHHHHCTSSB
T ss_pred             CCHHHHHHHHHHCCCEEEEEChHHhhccCc
Confidence            568999999999999999999999887554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.

>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]

Probab=94.38  E-value=0.093  Score=45.95  Aligned_cols=43  Identities=23%  Similarity=0.423  Sum_probs=36.3

Q ss_pred             ccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHH
Q 027785           86 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA  131 (219)
Q Consensus        86 ~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La  131 (219)
                      +|.++||||+|.+   .-+--+.-++.+.+++.|..+||.|.++..
T Consensus       344 ~dgIlVPGGFG~R---G~eGkI~Ai~yAREn~iP~lGIClGmQ~av  386 (533)
T COG0504         344 VDGILVPGGFGYR---GVEGKIAAIRYARENNIPFLGICLGMQLAV  386 (533)
T ss_pred             CCEEEeCCCCCcC---chHHHHHHHHHHHhcCCCEEEEchhHHHHH
Confidence            8999999999853   456677788888899999999999998543

>COG3442 Predicted glutamine amidotransferase [General function prediction only]

Probab=94.37  E-value=0.046  Score=42.83  Aligned_cols=50  Identities=20%  Similarity=0.332  Sum_probs=37.9

Q ss_pred             CCccEEEEcCCCCc-cc-ccCC-hHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           84 TKYDGLVIPGGRAP-EY-LAMN-DSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        84 ~~~D~liipGG~~~-~~-~~~~-~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ..||++++-||..- .. ..++ ..-..-|++..+.++|+.+||.|.++|.+-
T Consensus        51 ~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG~y  103 (250)
T COG3442          51 DSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLGQY  103 (250)
T ss_pred             ccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhhccce
Confidence            47999999887642 11 1222 455677888889999999999999999975

>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]

Probab=94.04  E-value=0.036  Score=43.71  Aligned_cols=55  Identities=44%  Similarity=0.773  Sum_probs=42.7

Q ss_pred             ecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCC
Q 027785           41 ACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGR   95 (219)
Q Consensus        41 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~   95 (219)
                      +.+.++.++.+.+..+..++++.+...-|.+...+.+|+++....||.|++|||.
T Consensus       193 v~~~~~~~e~~a~~~~~~~~~~v~~~~~g~~~~~~~~~dd~~~~syD~ivlPgg~  247 (247)
T KOG2764|consen  193 VAPEKKAGEACATADHDLEGRQVPVEKVGHNFAKTVAWDDAAVSSYDLIVLPGGR  247 (247)
T ss_pred             cCCCchhcceecceehhhhcCcceeeccccceEEEEEehhhhcccccEEEecCCC
Confidence            6677666677777777666666677777777777777999888899999999984

>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]

Probab=93.78  E-value=0.14  Score=48.29  Aligned_cols=54  Identities=26%  Similarity=0.468  Sum_probs=43.1

Q ss_pred             ccCccCCCCCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           75 NATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        75 ~~~~~~~~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      +..+.+   .+||.|++..|+|...  ..+.+.+-+++..+.++||++||.|-++||.|
T Consensus       203 ~~~i~~---~~yDGlflSNGPGdPe--~~~~~v~~vr~lL~~~~PvfGIClGHQllA~A  256 (1435)
T KOG0370|consen  203 DYPIAK---EEYDGLFLSNGPGDPE--LCPLLVQNVRELLESNVPVFGICLGHQLLALA  256 (1435)
T ss_pred             Cccccc---cccceEEEeCCCCCch--hhHHHHHHHHHHHhCCCCeEEEehhhHHHHHh
Confidence            444544   3899999999987432  35678888888888889999999999999987

>TIGR02069 cyanophycinase cyanophycinase

Probab=93.56  E-value=0.29  Score=39.62  Aligned_cols=49  Identities=18%  Similarity=0.367  Sum_probs=39.3

Q ss_pred             CCccEEEEcCCCCcc--cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHh
Q 027785           84 TKYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA  132 (219)
Q Consensus        84 ~~~D~liipGG~~~~--~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~  132 (219)
                      ...|+|++.||.-..  .......+.+.|++.+++|.++++..+|+.++..
T Consensus        81 ~~ad~I~~~GGnq~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~i~~~  131 (250)
T TIGR02069        81 SNATGIFFTGGDQLRITSLLGDTPLLDRLRKRVHEGIILGGTSAGAAVMSD  131 (250)
T ss_pred             hhCCEEEEeCCCHHHHHHHHcCCcHHHHHHHHHHcCCeEEEccHHHHhccc
Confidence            478999999997432  1234567888999999999999999999987754

This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.

>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.45  E-value=0.07  Score=42.23  Aligned_cols=50  Identities=32%  Similarity=0.560  Sum_probs=30.7

Q ss_pred             CCccEEEEcCCC-Cc--ccc-------------cCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           84 TKYDGLVIPGGR-AP--EYL-------------AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        84 ~~~D~liipGG~-~~--~~~-------------~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ...|.|++|||. ..  ...             .++.--..+++.+.++++||.+||-|.++|.-+
T Consensus        57 ~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~~~PilGICrG~Q~lnv~  122 (217)
T PF07722_consen   57 DRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGRGKPILGICRGMQLLNVA  122 (217)
T ss_dssp             HCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCTT--EEEETHHHHHHHHH
T ss_pred             hhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhcCCCEEEEcHHHHHHHHH
Confidence            368999999997 32  111             112234667777778999999999999988653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.

>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]

Probab=93.33  E-value=0.4  Score=45.07  Aligned_cols=105  Identities=18%  Similarity=0.207  Sum_probs=70.3

Q ss_pred             CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG   88 (219)
Q Consensus         9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~   88 (219)
                      .||+|+--+|.+  .-..+...|..+||+..=+..+.-                         +.-+     ...++|--
T Consensus      1059 PkVAilREeGvN--g~rEMa~af~~AgF~~~DVtmtDl-------------------------L~G~-----~~ld~frG 1106 (1320)
T KOG1907|consen 1059 PKVAILREEGVN--GDREMAAAFYAAGFETVDVTMTDL-------------------------LAGR-----HHLDDFRG 1106 (1320)
T ss_pred             CceEEeeccccc--cHHHHHHHHHHcCCceeeeeeehh-------------------------hcCc-----eeHhHhcc
Confidence            399999999988  566777789999997654433210                         0011     22346888


Q ss_pred             EEEcCCCCc-----------ccccCChHHHHHHHHHHh-cCCeEEEEehhHHHHHhCcccCCceEeeCCC
Q 027785           89 LVIPGGRAP-----------EYLAMNDSVIDLVRKFSN-SGKTIASICHGQLILAAADVVKGRKCTAYPP  146 (219)
Q Consensus        89 liipGG~~~-----------~~~~~~~~l~~~l~~~~~-~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~  146 (219)
                      |+.+||+.-           .....++.+..=..+|++ +..+-.+||+|.++++..|.+- -.+-.+|.
T Consensus      1107 laf~GGFSYaDvLgSakGWAasil~ne~v~~QF~~F~~R~DtFslGiCNGCQlms~Lg~i~-p~~~~~p~ 1175 (1320)
T KOG1907|consen 1107 LAFCGGFSYADVLGSAKGWAASILFNESVRSQFEAFFNRQDTFSLGICNGCQLMSRLGWIG-PEVGKWPD 1175 (1320)
T ss_pred             eeeecCcchHhhhccccchhhheeeChhHHHHHHHHhcCCCceeeecccHhHHHHHhcccC-ccccCCCc
Confidence            888898641           123557777776677776 4677889999999999988654 23434443

>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS)

Probab=92.37  E-value=0.11  Score=39.61  Aligned_cols=56  Identities=18%  Similarity=0.324  Sum_probs=37.4

Q ss_pred             CccCCCCCCccEEEEcCCCCc-ccc---cCChHHHHHHHHHHhcCCeEEEEehhHHHHHh
Q 027785           77 TFDEIDPTKYDGLVIPGGRAP-EYL---AMNDSVIDLVRKFSNSGKTIASICHGQLILAA  132 (219)
Q Consensus        77 ~~~~~~~~~~D~liipGG~~~-~~~---~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~  132 (219)
                      +++++....||.+||.|.+-. ..+   .--+++.+.+....++..++.++|-|+++...
T Consensus        54 ~~~~i~~~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal~  113 (175)
T cd03131          54 TFDDIRDAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALY  113 (175)
T ss_pred             CHHHccccCCCEEEEeCCCcccCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence            466666678999999997631 111   11124555555555788999999999987554

Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti

>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]

Probab=92.20  E-value=0.77  Score=34.35  Aligned_cols=46  Identities=24%  Similarity=0.276  Sum_probs=35.1

Q ss_pred             CCCCCccEEEEcCCCCcccccCChHHHHHHHHHHh--cCCeEEEEehhHH
Q 027785           81 IDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSN--SGKTIASICHGQL  128 (219)
Q Consensus        81 ~~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~--~~~~v~~ic~G~~  128 (219)
                      .++.+||+++|...-  ...+.++.+.+|++++.+  ..+|.+..|.+..
T Consensus        43 ~~l~~ydavVIgAsI--~~~h~~~~~~~Fv~k~~e~L~~kP~A~f~vnl~   90 (175)
T COG4635          43 PALEDYDAVVIGASI--RYGHFHEAVQSFVKKHAEALSTKPSAFFSVNLT   90 (175)
T ss_pred             cChhhCceEEEecch--hhhhhHHHHHHHHHHHHHHHhcCCceEEEeehh
Confidence            345689999995432  233567899999999988  6899999998764

>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=91.94  E-value=1.7  Score=36.34  Aligned_cols=88  Identities=20%  Similarity=0.174  Sum_probs=54.8

Q ss_pred             CCEEEEEecCCCCc--hhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCC
Q 027785            8 KRSVLLLCGDYMED--YEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTK   85 (219)
Q Consensus         8 ~~kv~il~~~g~~~--~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~   85 (219)
                      .+||+++.-++-..  ..+....+.|.+.|+++.+.......                    .+..     .+.......
T Consensus         3 ~kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~--------------------~~~~-----~~~~~~~~~   57 (305)
T PRK02645          3 LKQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKD--------------------NPYP-----VFLASASEL   57 (305)
T ss_pred             cCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhh--------------------cccc-----chhhccccC
Confidence            46899998876433  23556667788899987775433210                    0000     011111236


Q ss_pred             ccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEeh-hHH
Q 027785           86 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH-GQL  128 (219)
Q Consensus        86 ~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~-G~~  128 (219)
                      +|++++.||.|        .++..++.+...+.|+++|-. |..
T Consensus        58 ~d~vi~~GGDG--------T~l~~~~~~~~~~~pv~gin~~G~l   93 (305)
T PRK02645         58 IDLAIVLGGDG--------TVLAAARHLAPHDIPILSVNVGGHL   93 (305)
T ss_pred             cCEEEEECCcH--------HHHHHHHHhccCCCCEEEEecCCcc
Confidence            89999999865        355566666677899999987 654

>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]

Probab=91.32  E-value=0.43  Score=41.39  Aligned_cols=45  Identities=20%  Similarity=0.330  Sum_probs=35.6

Q ss_pred             CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHH
Q 027785           84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA  131 (219)
Q Consensus        84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La  131 (219)
                      ...|-++||||+|.+   .-+--+.-++.+.+++.|..+||.|.++..
T Consensus       362 ~~adGilvPGGFG~R---GveG~i~Aak~ARen~iP~LGiCLGmQ~Av  406 (585)
T KOG2387|consen  362 KSADGILVPGGFGDR---GVEGKILAAKWARENKIPFLGICLGMQLAV  406 (585)
T ss_pred             ccCCeEEeCCccccc---chhHHHHHHHHHHhcCCCeEeeehhhhHHH
Confidence            368999999999864   345566667777889999999999987543

>COG3340 PepE Peptidase E [Amino acid transport and metabolism]

Probab=90.60  E-value=0.47  Score=37.21  Aligned_cols=51  Identities=18%  Similarity=0.188  Sum_probs=39.0

Q ss_pred             CCccEEEEcCCCCcc--cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCc
Q 027785           84 TKYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD  134 (219)
Q Consensus        84 ~~~D~liipGG~~~~--~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aG  134 (219)
                      .+-|+|+|.||.--.  ...+...+.+.|++..++|++.++..+|+.+-...+
T Consensus        83 ~~~d~IyVgGGNTF~LL~~lke~gld~iIr~~vk~G~~YiG~SAGA~ia~p~I  135 (224)
T COG3340          83 MKADIIYVGGGNTFNLLQELKETGLDDIIRERVKAGTPYIGWSAGANIAGPTI  135 (224)
T ss_pred             hhccEEEECCchHHHHHHHHHHhCcHHHHHHHHHcCCceEEeccCceeecCce
Confidence            468999998886321  123445689999999999999999999997666553

>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase

Probab=90.54  E-value=0.38  Score=38.06  Aligned_cols=50  Identities=20%  Similarity=0.367  Sum_probs=40.1

Q ss_pred             CCccEEEEcCCCCcc--cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           84 TKYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        84 ~~~D~liipGG~~~~--~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ...|+|++.||.-..  .......+.+.|++.+++|.++++..+|+.++...
T Consensus        82 ~~ad~I~~~GG~~~~~~~~l~~t~l~~~l~~~~~~G~v~~G~SAGA~i~~~~  133 (217)
T cd03145          82 RDADGIFFTGGDQLRITSALGGTPLLDALRKVYRGGVVIGGTSAGAAVMSDT  133 (217)
T ss_pred             HhCCEEEEeCCcHHHHHHHHcCChHHHHHHHHHHcCCEEEEccHHHHhhhhc
Confidence            478999999996432  22345578899999999999999999999998754

Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.

>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins

Probab=90.03  E-value=6.2  Score=32.11  Aligned_cols=72  Identities=15%  Similarity=0.179  Sum_probs=39.7

Q ss_pred             CCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEE-EEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecC
Q 027785           83 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIA-SICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEP  161 (219)
Q Consensus        83 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~-~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~  161 (219)
                      +.++|+|+|+|...+    -.+.-..-|.++..+|..+. .+-....-+.  +...+.. ...+...+.|..+|..+.+.
T Consensus       195 P~~~d~Lvi~~P~~~----ls~~e~~~l~~yl~~GG~ll~~~d~~~~~~~--~~~~~~~-~~~~~L~~lL~~~Gi~~~~~  267 (271)
T PF09822_consen  195 PDDADVLVIAGPKTD----LSEEELYALDQYLMNGGKLLILLDPFSVELQ--GLWAGGA-QRDSNLNDLLEEYGIRINPG  267 (271)
T ss_pred             CCCCCEEEEECCCCC----CCHHHHHHHHHHHHcCCeEEEEECCcccccc--ccccccc-ccccCHHHHHHHcCCEeCCC
Confidence            468999999885432    34566666777776665544 3333322111  2111111 11566677777777665544

>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3

Probab=87.98  E-value=2.2  Score=33.31  Aligned_cols=59  Identities=24%  Similarity=0.405  Sum_probs=34.6

Q ss_pred             hhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCccccc
Q 027785           22 YEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLA  101 (219)
Q Consensus        22 ~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~~  101 (219)
                      .++...+..|.+.|+.+++++++.                                    +...|.+||+|.-.     .
T Consensus        30 ~~~~~~y~al~~~gi~vDvv~~~~------------------------------------dL~~Ykllv~P~~~-----~   68 (207)
T PF08532_consen   30 DQVRGWYRALRELGIPVDVVSPDD------------------------------------DLSGYKLLVLPSLY-----I   68 (207)
T ss_dssp             HHHHHHHHHHHTTT--EEEE-TTS--------------------------------------TT-SEEEES--S-----C
T ss_pred             HHHHHHHHHHHHcCCceEEecCcC------------------------------------CcccCcEEEEeeEE-----E
Confidence            356778889999999999997652                                    12369999999743     3


Q ss_pred             CChHHHHHHHHHHhcCCeEE
Q 027785          102 MNDSVIDLVRKFSNSGKTIA  121 (219)
Q Consensus       102 ~~~~l~~~l~~~~~~~~~v~  121 (219)
                      -++.+.+.|+++.++|..+.
T Consensus        69 l~~~~~~~L~~yV~~GG~li   88 (207)
T PF08532_consen   69 LSPEFAERLRAYVENGGTLI   88 (207)
T ss_dssp             --HHH---HHHHHT-SS-EE
T ss_pred             EChHHHHHHHHHHHCCCEEE
Confidence            57888899999999876554

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.

>COG4285 Uncharacterized conserved protein [Function unknown]

Probab=87.95  E-value=3.6  Score=32.44  Aligned_cols=89  Identities=21%  Similarity=0.355  Sum_probs=59.1

Q ss_pred             EEEEEecCCCCchhhHHHHHHHHhCC---CeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCc
Q 027785           10 SVLLLCGDYMEDYEAMVPFQALLAFG---VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKY   86 (219)
Q Consensus        10 kv~il~~~g~~~~e~~~~~~~l~~ag---~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~   86 (219)
                      +|.|.-.+|.+...+-.....|+.--   +.+..+...                          .+ .+..|.+    .-
T Consensus         2 ~VlVYn~~GvSp~~lkhtv~sLr~~~~p~y~v~~V~~~--------------------------~L-i~EpW~~----~T   50 (253)
T COG4285           2 NVLVYNGLGVSPYSLKHTVRSLRLFAPPYYAVDRVDAQ--------------------------FL-IKEPWEE----TT   50 (253)
T ss_pred             ceEEeCCCCCChHHHHHHHHHHHhhccchheEEEeeeh--------------------------ee-ecCcchh----ce
Confidence            68888889999988888888887532   344444221                          11 1223543    35


Q ss_pred             cEEEEcCCCCccc-ccCChHHHHHHHHHHhcCCeEEEEehhHHH
Q 027785           87 DGLVIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLI  129 (219)
Q Consensus        87 D~liipGG~~~~~-~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~  129 (219)
                      -+|++|||..... -.-++..-+-|....++|.-..+||+|..+
T Consensus        51 ~lLV~pGGaDlpY~~~l~g~g~a~i~~yvk~GG~fLGiCAG~YF   94 (253)
T COG4285          51 LLLVFPGGADLPYVQVLQGLGTARIKNYVKEGGNFLGICAGGYF   94 (253)
T ss_pred             EEEEecCCCCchHHHHhcchhhhhHHHHHhcCCeEEEEeccccc
Confidence            6899999975321 122455567777788889999999999864

>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=87.36  E-value=5.8  Score=32.63  Aligned_cols=89  Identities=15%  Similarity=0.158  Sum_probs=51.5

Q ss_pred             CEEEEEecCCCCc--hhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCc
Q 027785            9 RSVLLLCGDYMED--YEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKY   86 (219)
Q Consensus         9 ~kv~il~~~g~~~--~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~   86 (219)
                      +||+|+...+-..  ..+......|+..|+++.+.......                .    + ... .....+....++
T Consensus         1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~----------------~----~-~~~-~~~~~~~~~~~~   58 (277)
T PRK03708          1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEH----------------L----P-EFS-EEDVLPLEEMDV   58 (277)
T ss_pred             CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhh----------------c----C-ccc-ccccccccccCC
Confidence            3799998765432  23445666788899988875422110                0    0 000 000111112368


Q ss_pred             cEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHH
Q 027785           87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL  128 (219)
Q Consensus        87 D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~  128 (219)
                      |++++.||.|.        +++.++ .+..+.||.+|-.|..
T Consensus        59 d~vi~iGGDGT--------lL~a~~-~~~~~~pi~gIn~G~l   91 (277)
T PRK03708         59 DFIIAIGGDGT--------ILRIEH-KTKKDIPILGINMGTL   91 (277)
T ss_pred             CEEEEEeCcHH--------HHHHHH-hcCCCCeEEEEeCCCC
Confidence            99999998663        344455 5556888998888874

>PRK11104 hemG protoporphyrinogen oxidase; Provisional

Probab=86.92  E-value=6.1  Score=30.08  Aligned_cols=42  Identities=17%  Similarity=0.214  Sum_probs=29.6

Q ss_pred             CCCccEEEEcCCCCcccccCChHHHHHHHHHHh--cCCeEEEEehh
Q 027785           83 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSN--SGKTIASICHG  126 (219)
Q Consensus        83 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~--~~~~v~~ic~G  126 (219)
                      ..+||.||+.++.-..  ...+.+.+|+++...  ++|+++..|.|
T Consensus        44 l~~yD~vIlGspi~~G--~~~~~~~~fl~~~~~~l~~K~v~~F~v~   87 (177)
T PRK11104         44 LSDYDRVVIGASIRYG--HFHSALYKFVKKHATQLNQMPSAFFSVN   87 (177)
T ss_pred             HHHCCEEEEECccccC--CcCHHHHHHHHHHHHHhCCCeEEEEEec
Confidence            3579998886543222  235788899887543  68888888887

>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain

Probab=86.67  E-value=5.8  Score=29.18  Aligned_cols=60  Identities=25%  Similarity=0.440  Sum_probs=44.9

Q ss_pred             hhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCccccc
Q 027785           22 YEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLA  101 (219)
Q Consensus        22 ~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~~  101 (219)
                      .++...+..|.+.|+.+++++++.                                    +..+|++||+|.-..     
T Consensus        26 ~~~~~~~~~l~~~gi~~d~v~~~~------------------------------------~l~~y~~vi~P~~~~-----   64 (154)
T cd03143          26 DLALALYRALRELGIPVDVVPPDA------------------------------------DLSGYKLVVLPDLYL-----   64 (154)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCC------------------------------------CcccCCEEEECchhc-----
Confidence            467788888889999998886432                                    113799999997532     


Q ss_pred             CChHHHHHHHHHHhcCCeEEE
Q 027785          102 MNDSVIDLVRKFSNSGKTIAS  122 (219)
Q Consensus       102 ~~~~l~~~l~~~~~~~~~v~~  122 (219)
                      ..+...+.|+++.++|..+.+
T Consensus        65 ~~~~~~~~l~~~v~~GG~li~   85 (154)
T cd03143          65 LSDATAAALRAYVENGGTLVA   85 (154)
T ss_pred             CCHHHHHHHHHHHHCCCEEEE
Confidence            356888999999998876554

A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.

>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=86.43  E-value=7.4  Score=32.36  Aligned_cols=91  Identities=16%  Similarity=0.139  Sum_probs=51.6

Q ss_pred             CEEEEEecCCCCc-hh-hHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCc
Q 027785            9 RSVLLLCGDYMED-YE-AMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKY   86 (219)
Q Consensus         9 ~kv~il~~~g~~~-~e-~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~   86 (219)
                      ++|+|+.-++-.. .+ +..+.+.|.+.|+++.+.......                . .........   ..+. ...+
T Consensus         5 ~~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~----------------~-~~~~~~~~~---~~~~-~~~~   63 (295)
T PRK01231          5 RNIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEV----------------L-PGHGLQTVS---RKLL-GEVC   63 (295)
T ss_pred             CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhh----------------c-Ccccccccc---hhhc-ccCC
Confidence            3799998765532 22 335556677888887765432110                0 000000000   1111 1368


Q ss_pred             cEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHH
Q 027785           87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL  128 (219)
Q Consensus        87 D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~  128 (219)
                      |++++.||.|.        ++..++.+...+.||.+|-.|..
T Consensus        64 d~vi~~GGDGt--------~l~~~~~~~~~~~Pvlgin~G~l   97 (295)
T PRK01231         64 DLVIVVGGDGS--------LLGAARALARHNVPVLGINRGRL   97 (295)
T ss_pred             CEEEEEeCcHH--------HHHHHHHhcCCCCCEEEEeCCcc
Confidence            99999998653        44445556667889999988864

>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional

Probab=86.42  E-value=7.7  Score=32.16  Aligned_cols=92  Identities=21%  Similarity=0.252  Sum_probs=52.4

Q ss_pred             CCEEEEEecCCCCchh--hHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCC
Q 027785            8 KRSVLLLCGDYMEDYE--AMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTK   85 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e--~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~   85 (219)
                      .++|+|+.-.+-....  +......|+..|+++.+.......                .. ...  +. .....+. ...
T Consensus         5 ~~~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~----------------~~-~~~--~~-~~~~~~~-~~~   63 (291)
T PRK02155          5 FKTVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARN----------------IG-LTG--YP-ALTPEEI-GAR   63 (291)
T ss_pred             CCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhh----------------cC-ccc--cc-ccChhHh-ccC
Confidence            4679999876553222  455556677888877664322110                00 000  00 0011222 136


Q ss_pred             ccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHH
Q 027785           86 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL  128 (219)
Q Consensus        86 ~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~  128 (219)
                      +|++|+.||.|        .+++.++.+...+.|+.+|-.|..
T Consensus        64 ~d~vi~~GGDG--------t~l~~~~~~~~~~~pilGIn~G~l   98 (291)
T PRK02155         64 ADLAVVLGGDG--------TMLGIGRQLAPYGVPLIGINHGRL   98 (291)
T ss_pred             CCEEEEECCcH--------HHHHHHHHhcCCCCCEEEEcCCCc
Confidence            89999999865        345556666667888888888774

>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]

Probab=86.04  E-value=4.1  Score=34.37  Aligned_cols=49  Identities=29%  Similarity=0.443  Sum_probs=37.7

Q ss_pred             CccEEEEcCC--CCc-ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           85 KYDGLVIPGG--RAP-EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        85 ~~D~liipGG--~~~-~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ..|-||+||-  +++ .+......+.+-|++..+.+||+.+||.|.++|-..
T Consensus        39 ~a~rLIfPGVGnfg~~~D~L~~~Gf~eplr~YiesgkPfmgicvGlQaLF~g   90 (541)
T KOG0623|consen   39 NADRLIFPGVGNFGPAMDVLNRTGFAEPLRKYIESGKPFMGICVGLQALFDG   90 (541)
T ss_pred             cCceEeecCcccchHHHHHHhhhhhHHHHHHHHhcCCCeEeehhhHHHHhcc
Confidence            5788999973  232 222345678888999999999999999999988653

>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]

Probab=84.51  E-value=6.4  Score=29.71  Aligned_cols=62  Identities=16%  Similarity=0.234  Sum_probs=40.9

Q ss_pred             CCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC----------cccCCceEeeCCCC
Q 027785           83 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA----------DVVKGRKCTAYPPV  147 (219)
Q Consensus        83 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a----------GlL~g~~~t~~~~~  147 (219)
                      ...++-|+|..|+|..  .+..--.+-|+++ ....|+.++|.|-+.+.++          ++..||..-.|.+.
T Consensus        61 ~~NP~~LliSPGPG~P--~DsGIs~~~i~~f-~~~iP~fGvCMGlQCi~e~fGGkv~~a~~~i~HGK~S~i~~D~  132 (223)
T KOG0026|consen   61 RKNPRGLLISPGPGTP--QDSGISLQTVLEL-GPLVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSMVHYDE  132 (223)
T ss_pred             hcCCCeEEecCCCCCC--ccccchHHHHHHh-CCCCceeeeehhhhhhhhhhCcEEeccCcceeeccccccccCC
Confidence            3457888887777632  1344445556654 4567899999999987765          46777766666554

>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=83.97  E-value=16  Score=30.36  Aligned_cols=96  Identities=20%  Similarity=0.275  Sum_probs=53.1

Q ss_pred             CCEEEEEecCCCCc-hh-hHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceec-cccCCccccccCccCCCCC
Q 027785            8 KRSVLLLCGDYMED-YE-AMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYS-ETRGHNFALNATFDEIDPT   84 (219)
Q Consensus         8 ~~kv~il~~~g~~~-~e-~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~i~~~~~~~~~~~~   84 (219)
                      .+||+|+.-++-.. .+ +....+.|.+.|+++.+-.....+ +.            ... ...+...   ....+. ..
T Consensus         5 ~~~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~-~~------------~~~~~~~~~~~---~~~~~~-~~   67 (296)
T PRK04539          5 FHNIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKE-GC------------IYTQDTVGCHI---VNKTEL-GQ   67 (296)
T ss_pred             CCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccc-cc------------hhccccccccc---cchhhc-Cc
Confidence            46899998765432 22 335556677888887664321100 00            000 0001111   011122 13


Q ss_pred             CccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHH
Q 027785           85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL  128 (219)
Q Consensus        85 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~  128 (219)
                      +.|++++.||.|        .++.-.+.+...+.||.+|-.|..
T Consensus        68 ~~D~vi~lGGDG--------T~L~aa~~~~~~~~PilGIN~G~l  103 (296)
T PRK04539         68 YCDLVAVLGGDG--------TFLSVAREIAPRAVPIIGINQGHL  103 (296)
T ss_pred             CCCEEEEECCcH--------HHHHHHHHhcccCCCEEEEecCCC
Confidence            589999999865        355555666667889999998873

>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=83.41  E-value=16  Score=30.32  Aligned_cols=95  Identities=15%  Similarity=0.151  Sum_probs=53.6

Q ss_pred             CCEEEEEecCCCCc-hh-hHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCC
Q 027785            8 KRSVLLLCGDYMED-YE-AMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTK   85 (219)
Q Consensus         8 ~~kv~il~~~g~~~-~e-~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~   85 (219)
                      .++|+|+.-++-.. .+ +....+.|.+.|+++.+-.....                ..    +........+.+. ..+
T Consensus         5 ~~~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~----------------~~----~~~~~~~~~~~~~-~~~   63 (292)
T PRK03378          5 FKCIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAH----------------EL----QLKNVKTGTLAEI-GQQ   63 (292)
T ss_pred             CCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh----------------hc----Ccccccccchhhc-CCC
Confidence            46899998764432 22 33455667788887766432111                00    0000000111222 236


Q ss_pred             ccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHH-HHH
Q 027785           86 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL-ILA  131 (219)
Q Consensus        86 ~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~-~La  131 (219)
                      +|++++.||.|        .++.-.+.+...+.||.+|-.|.. +|+
T Consensus        64 ~d~vi~lGGDG--------T~L~aa~~~~~~~~Pilgin~G~lGFl~  102 (292)
T PRK03378         64 ADLAIVVGGDG--------NMLGAARVLARYDIKVIGINRGNLGFLT  102 (292)
T ss_pred             CCEEEEECCcH--------HHHHHHHHhcCCCCeEEEEECCCCCccc
Confidence            89999999865        345555666666789999998883 444

>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins

Probab=81.80  E-value=5.8  Score=26.11  Aligned_cols=21  Identities=19%  Similarity=-0.141  Sum_probs=16.9

Q ss_pred             hhhHHHHHHHHhCCCeEEEec
Q 027785           22 YEAMVPFQALLAFGVSVDAAC   42 (219)
Q Consensus        22 ~e~~~~~~~l~~ag~~v~~~s   42 (219)
                      ..+....+.|+..||+|.-+.
T Consensus         8 ~~Ls~v~~~L~~~GyeVv~l~   28 (80)
T PF03698_consen    8 EGLSNVKEALREKGYEVVDLE   28 (80)
T ss_pred             CCchHHHHHHHHCCCEEEecC
Confidence            367788999999999886654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	219
3uk7_A	396	Crystal Structure Of Arabidopsis Thaliana Dj-1d Len		9e-87
1g2i_A	166	Crystal Structure Of A Novel Intracellular Protease		2e-25
3l18_A	168	Ton1285, An Intracellular Protease From Thermococcu		3e-23
1oi4_A	193	Crystal Structure Of Yhbo From Escherichia Coli Len		3e-19
2vrn_A	190	The Structure Of The Stress Response Protein Dr1199		4e-14
3fse_A	365	Crystal Structure Of A Two-Domain Protein Containin		7e-14
4e08_A	190	Crystal Structure Of Drosophila Melanogaster Dj-1be		3e-08
3nor_A	231	Crystal Structure Of T102s Isocyanide Hydratase Fro		2e-05
3nov_A	231	Crystal Structure Of D17e Isocyanide Hydratase From		2e-05
3noo_A	231	Crystal Structure Of C101a Isocyanide Hydratase Fro		3e-04
2ab0_A	205	Crystal Structure Of E. Coli Protein Yajl (Thij) Le		3e-04
3noq_A	231	Crystal Structure Of C101s Isocyanide Hydratase Fro		3e-04
3non_A	231	Crystal Structure Of Isocyanide Hydratase From Pseu		4e-04

>pdb|3UK7|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dj-1d Length = 396

Iteration: 1
 Score =  315 bits (808), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 149/206 (72%), Positives = 170/206 (82%)
Query: 4   SKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQT 63
           S    R+VL+LCGDY EDYE  VPFQAL AFG++V   CPGKK+GD CPTAVH   GHQT
Sbjct: 8   SXANSRTVLILCGDYXEDYEVXVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQT 67
Query: 64  YSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASI 123
           Y E+RGHNF LNATFDE+D +KYDGLVIPGGRAPEYLA+  SV++LV++FS SGK IASI
Sbjct: 68  YFESRGHNFTLNATFDEVDLSKYDGLVIPGGRAPEYLALTASVVELVKEFSRSGKPIASI 127
Query: 124 CHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHP 183
            HGQLILAAAD V GRKCTAY  V P L+AAGA W+EP T   CVVDG++IT ATYEGHP
Sbjct: 128 XHGQLILAAADTVNGRKCTAYATVGPSLVAAGAKWVEPITPDVCVVDGSLITAATYEGHP 187
Query: 184 EFIRLFLKALGGTITGSDKRILFLCG 209
           EFI+LF+KALGG ITG++KRILFLCG
Sbjct: 188 EFIQLFVKALGGKITGANKRILFLCG 213

>pdb|1G2I|A Chain A, Crystal Structure Of A Novel Intracellular Protease From Pyrococcus Horikoshii At 2 A Resolution Length = 166

Iteration: 1
 Score =  112 bits (280), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 64/184 (34%), Positives = 96/184 (52%), Gaps = 24/184 (13%)
Query: 10  SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRG 69
            VL L  +  ED E + P+  L   G  V  A                S    T +   G
Sbjct: 2   KVLFLTANEFEDVELIYPYHRLKEEGHEVYIA----------------SFERGTITGKHG 45
Query: 70  HNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI 129
           ++  ++ TFD+++P ++D LV+PGGRAPE + +N+  + + RK  + GK +ASICHG  I
Sbjct: 46  YSVKVDLTFDKVNPEEFDALVLPGGRAPERVRLNEKAVSIARKXFSEGKPVASICHGPQI 105
Query: 130 LAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGAT----YEGHPEF 185
           L +A V++GRK T+YP +K   I AG  W++ E     VVDGN ++       Y    EF
Sbjct: 106 LISAGVLRGRKGTSYPGIKDDXINAGVEWVDAE----VVVDGNWVSSRVPADLYAWXREF 161
Query: 186 IRLF 189
           ++L 
Sbjct: 162 VKLL 165

>pdb|3L18|A Chain A, Ton1285, An Intracellular Protease From Thermococcus Onnurineus Na1 Length = 168

Iteration: 1
 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 95/186 (51%), Gaps = 28/186 (15%)
Query: 10  SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAAC--PGKKSGDVCPTAVHQSTGHQTYSET 67
            VL L  D  ED E + P   +   G  V  A    GK +G                   
Sbjct: 4   KVLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRGKITG------------------K 45
Query: 68  RGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127
            G++  ++ TF+E+DP ++D LV+PGG+APE + +N+  + + R+     K +ASICHG 
Sbjct: 46  HGYSVNVDLTFEEVDPDEFDALVLPGGKAPEIVRLNEKAVMITRRMFEDDKPVASICHGP 105
Query: 128 LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIIT----GATYEGHP 183
            IL +A V+KGR+ T+   ++  +I AGA WI+ E     VVDGN ++    G  Y    
Sbjct: 106 QILISAKVLKGRRGTSTITIRDDVINAGAEWIDAE----VVVDGNWVSSRHPGDLYAWMR 161
Query: 184 EFIRLF 189
           EF++L 
Sbjct: 162 EFVKLL 167

>pdb|1OI4|A Chain A, Crystal Structure Of Yhbo From Escherichia Coli Length = 193

Iteration: 1
 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 98/194 (50%), Gaps = 25/194 (12%)
Query: 6   GGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYS 65
           G  + + +L  D  ED E   P             A   +K+G    T + +  G     
Sbjct: 21  GLSKKIAVLITDEFEDSEFTSP-------------ADEFRKAGHEVIT-IEKQAGKTVKG 66
Query: 66  ETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 125
           +    +  ++ + DE+ P ++D L++PGG +P+YL  ++  +   R F NSGK + +ICH
Sbjct: 67  KKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICH 126
Query: 126 GQLILAAADVVKGRKCTAYPPVKPVLI---AAGASWIEPETMAACVVDGN-IITGATYEG 181
           G  +L +ADV++GRK TA   VKP++I    AGA + + E     VVD + ++T  T + 
Sbjct: 127 GPQLLISADVIRGRKLTA---VKPIIIDVKNAGAEFYDQE----VVVDKDQLVTSRTPDD 179
Query: 182 HPEFIRLFLKALGG 195
            P F R  L+ LG 
Sbjct: 180 LPAFNREALRLLGA 193

>pdb|2VRN|A Chain A, The Structure Of The Stress Response Protein Dr1199 From Deinococcus Radiodurans: A Member Of The Dj-1 Superfamily Length = 190

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 26/183 (14%)
Query: 9   RSVLLLCGDYMEDYEAMVPFQALLAFG-----VSVDAACPGKKSGDVCPTAVHQSTGHQT 63
           + + +L  D +E+ E   P  A+ A G     +S++        GD+ P           
Sbjct: 10  KKIAILAADGVEEIELTSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQ---------- 59
Query: 64  YSETRGHNFALNATFDEIDPTKYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIAS 122
                   + ++    E+  + YDGL++PGG   P+ L + +  +  VR   ++GK IA+
Sbjct: 60  ------EKYRVDHVVSEVQVSDYDGLLLPGGTVNPDKLRLEEGAMKFVRDMYDAGKPIAA 113
Query: 123 ICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGH 182
           I HG   L+   + +G K T++  +K  L  AGA W++ E    CV D  ++T    +  
Sbjct: 114 IXHGPWSLSETGIAQGLKMTSWSSLKRELTLAGAQWVDEE----CVTDKGVVTSRKPDDL 169
Query: 183 PEF 185
           P F
Sbjct: 170 PAF 172

>pdb|3FSE|A Chain A, Crystal Structure Of A Two-Domain Protein Containing Dj-1THIJPFPI- Like And Ferritin-Like Domains (Ava_4496) From Anabaena Variabilis Atcc 29413 At 1.90 A Resolution Length = 365

Iteration: 1
 Score = 73.9 bits (180), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 83/174 (47%), Gaps = 20/174 (11%)
Query: 3   NSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQ 62
           ++  GK+ V +L    +ED E ++P   L   G  V                V  S  ++
Sbjct: 5   HNNSGKKKVAILIEQAVEDTEFIIPCNGLKQAGFEV---------------VVLGSRXNE 49
Query: 63  TYSETRGH-NFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIA 121
            Y   RG  +   + T  E   +++D +VIPGG AP+    N + +  V++    GK +A
Sbjct: 50  KYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGXAPDKXRRNPNTVRFVQEAXEQGKLVA 109
Query: 122 SICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIIT 175
           ++ HG  +L   D+++G++ T +  +      AGA +++     A VVDGN+IT
Sbjct: 110 AVXHGPQVLIEGDLLRGKQATGFIAISKDXXNAGADYLDE----ALVVDGNLIT 159

>pdb|4E08|A Chain A, Crystal Structure Of Drosophila Melanogaster Dj-1beta Length = 190

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 11/112 (9%)
Query: 75  NATFDEIDPTKYDGLVIPGGRAPEYLAMNDS--VIDLVRKFSNSGKTIASICHGQLILAA 132
           + +  ++   K+D +V+PGG      AM +S  V DL+R   + G  IA+IC    +LA 
Sbjct: 57  DTSLAQVASDKFDVVVLPGGLGGSN-AMGESSLVGDLLRSQESGGGLIAAICAAPTVLAK 115
Query: 133 ADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIIT----GATYE 180
             V  G+  T+YP +KP L+    S+++ +T+   V DGN+IT    G  YE
Sbjct: 116 HGVASGKSLTSYPSMKPQLV-NNYSYVDDKTV---VKDGNLITSRGPGTAYE 163

>pdb|3NOR|A Chain A, Crystal Structure Of T102s Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 72  FALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 131
             L AT    D    D + IPGG     L  +   +  +R+ +   + + S+C G L+L 
Sbjct: 52  LVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVCSGSLVLG 111
Query: 132 AADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 176
           AA +++G++ T +     +L   GA  +        V DGN++TG
Sbjct: 112 AAGLLQGKRATTHWAYHELLAPLGAIPVHER----VVRDGNLLTG 152

>pdb|3NOV|A Chain A, Crystal Structure Of D17e Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 72  FALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 131
             L AT    D    D + IPGG     L  +   +  +R+ +   + + S+C G L+L 
Sbjct: 52  LVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVCTGSLVLG 111
Query: 132 AADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 176
           AA +++G++ T +     +L   GA  +        V DGN++TG
Sbjct: 112 AAGLLQGKRATTHWAYHELLAPLGAIPVHER----VVRDGNLLTG 152

>pdb|3NOO|A Chain A, Crystal Structure Of C101a Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 72  FALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 131
             L AT    D    D + IPGG     L  +   +  +R+ +   + + S+  G L+L 
Sbjct: 52  LVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVATGSLVLG 111
Query: 132 AADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 176
           AA +++G++ T +     +L   GA  +        V DGN++TG
Sbjct: 112 AAGLLQGKRATTHWAYHELLAPLGAIPVHER----VVRDGNLLTG 152

>pdb|2AB0|A Chain A, Crystal Structure Of E. Coli Protein Yajl (Thij) Length = 205

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 2/105 (1%)
Query: 46  KSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGG-RAPEYLAMND 104
           + G    TA   S G+   + +RG     +A   E+   +YD +V+PGG +  E    + 
Sbjct: 27  RGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDST 86
Query: 105 SVIDLVRKFSNSGKTIASICHG-QLILAAADVVKGRKCTAYPPVK 148
            +++ V++F  SG+ +A+IC     +L   D+      T +P +K
Sbjct: 87  LLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLK 131

>pdb|3NOQ|A Chain A, Crystal Structure Of C101s Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 72  FALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 131
             L AT    D    D + IPGG     L  +   +  +R+ +   + + S+  G L+L 
Sbjct: 52  LVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVSTGSLVLG 111
Query: 132 AADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 176
           AA +++G++ T +     +L   GA  +        V DGN++TG
Sbjct: 112 AAGLLQGKRATTHWAYHELLAPLGAIPVHER----VVRDGNLLTG 152

>pdb|3NON|A Chain A, Crystal Structure Of Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 72  FALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 131
             L AT    D    D + IPGG     L  +   +  +R+ +   + + S+  G L+L 
Sbjct: 52  LVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVXTGSLVLG 111
Query: 132 AADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 176
           AA +++G++ T +     +L   GA  +        V DGN++TG
Sbjct: 112 AAGLLQGKRATTHWAYHELLAPLGAIPVHER----VVRDGNLLTG 152

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	219
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	5e-89
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	1e-82
3l18_A	168	Intracellular protease I; gatase1_PFPI_LIKE, hydro	2e-72
2vrn_A	190	Protease I, DR1199; cysteine sulfenic acid, DJ-1/T	3e-72
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	1e-71
1oi4_A	193	Hypothetical protein YHBO; PFPI/THIJ family, compl	2e-70
3cne_A	175	Putative protease I; structural genomics, PSI-2, M	1e-44
4e08_A	190	DJ-1 beta; flavodoxin-like fold, stress response,	5e-36
3l3b_A	242	ES1 family protein; ssgcid, NIH, niaid, SBRI, UW,	4e-34
3ot1_A	208	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate	1e-33
3efe_A	212	THIJ/PFPI family protein; structural GEN csgid, ce	2e-33
2rk3_A	197	Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha	2e-32
4gdh_A	194	DJ-1, uncharacterized protein C22E12.03C; unknown	6e-31
2fex_A	188	Conserved hypothetical protein; structural genomic	1e-30
2ab0_A	205	YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase	3e-30
3f5d_A	206	Protein YDEA; unknow protein, PSI-II, nysgrc, stru	7e-29
1vhq_A	232	Enhancing lycopene biosynthesis protein 2; structu	4e-27
1u9c_A	224	APC35852; structural genomics, protein structure i	5e-23
1n57_A	291	Chaperone HSP31, protein YEDU; alpha-beta sandwich	7e-23
3bhn_A	236	THIJ/PFPI domain protein; structural genomics, joi	3e-21
1rw7_A	243	YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe	5e-20
3n7t_A	247	Macrophage binding protein; seattle structural gen	5e-17
3kkl_A	244	Probable chaperone protein HSP33; peptidase, heat	9e-17
3mgk_A	211	Intracellular protease/amidase related enzyme (THI	5e-14
3noq_A	231	THIJ/PFPI family protein; DJ-1 superfamily, isocya	3e-13
3ewn_A	253	THIJ/PFPI family protein; monomer, PSI nysgrc, str	1e-12
3gra_A	202	Transcriptional regulator, ARAC family; transcript	1e-08
3er6_A	209	Putative transcriptional regulator protein; struct	1e-08

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana} Length = 396

 Score =  266 bits (682), Expect = 5e-89
 Identities = 150/209 (71%), Positives = 172/209 (82%), Gaps = 1/209 (0%)

Query: 1   MANSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTG 60
             +    +  VL+LCGDYMEDYE MVPFQAL AFG++V   CPGKK+GD CPTAVH   G
Sbjct: 6   RGSMANSRT-VLILCGDYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCG 64

Query: 61  HQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTI 120
           HQTY E+RGHNF LNATFDE+D +KYDGLVIPGGRAPEYLA+  SV++LV++FS SGK I
Sbjct: 65  HQTYFESRGHNFTLNATFDEVDLSKYDGLVIPGGRAPEYLALTASVVELVKEFSRSGKPI 124

Query: 121 ASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYE 180
           ASICHGQLILAAAD V GRKCTAY  V P L+AAGA W+EP T   CVVDG++IT ATYE
Sbjct: 125 ASICHGQLILAAADTVNGRKCTAYATVGPSLVAAGAKWVEPITPDVCVVDGSLITAATYE 184

Query: 181 GHPEFIRLFLKALGGTITGSDKRILFLCG 209
           GHPEFI+LF+KALGG ITG++KRILFLCG
Sbjct: 185 GHPEFIQLFVKALGGKITGANKRILFLCG 213

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana} Length = 396

 Score =  250 bits (640), Expect = 1e-82
 Identities = 109/191 (57%), Positives = 139/191 (72%)

Query: 8   KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSET 67
            + +L LCGDYMEDYE  VPFQ+L A G  VDA CP KK+GD CPTA+H   G QTYSE 
Sbjct: 205 NKRILFLCGDYMEDYEVKVPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEK 264

Query: 68  RGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127
            GH FAL   FD++  + YD LVIPGGRAPEYLA+N+ V+++V++F NS K +ASICHGQ
Sbjct: 265 PGHTFALTTNFDDLVSSSYDALVIPGGRAPEYLALNEHVLNIVKEFMNSEKPVASICHGQ 324

Query: 128 LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIR 187
            ILAAA V+KGRKCTAYP VK  ++  G +W+EP+ +  C  DGN++TGA + GHPEF+ 
Sbjct: 325 QILAAAGVLKGRKCTAYPAVKLNVVLGGGTWLEPDPIDRCFTDGNLVTGAAWPGHPEFVS 384

Query: 188 LFLKALGGTIT 198
             +  LG  ++
Sbjct: 385 QLMALLGIQVS 395

>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} PDB: 1g2i_A Length = 168

 Score =  216 bits (552), Expect = 2e-72
 Identities = 59/187 (31%), Positives = 94/187 (50%), Gaps = 21/187 (11%)

Query: 7   GKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSE 66
             + VL L  D  ED E + P   +   G  V  A   +                   + 
Sbjct: 2   SMK-VLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRG----------------KITG 44

Query: 67  TRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 126
             G++  ++ TF+E+DP ++D LV+PGG+APE + +N+  + + R+     K +ASICHG
Sbjct: 45  KHGYSVNVDLTFEEVDPDEFDALVLPGGKAPEIVRLNEKAVMITRRMFEDDKPVASICHG 104

Query: 127 QLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFI 186
             IL +A V+KGR+ T+   ++  +I AGA WI+    A  VVDGN ++         ++
Sbjct: 105 PQILISAKVLKGRRGTSTITIRDDVINAGAEWID----AEVVVDGNWVSSRHPGDLYAWM 160

Query: 187 RLFLKAL 193
           R F+K L
Sbjct: 161 REFVKLL 167

>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans} Length = 190

 Score =  217 bits (554), Expect = 3e-72
 Identities = 49/204 (24%), Positives = 88/204 (43%), Gaps = 17/204 (8%)

Query: 1   MANSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTG 60
            A    GK+ + +L  D +E+ E   P  A+ A G + +               +    G
Sbjct: 3   KAKDLTGKK-IAILAADGVEEIELTSPRAAIEAAGGTTELISLEPG-------EIQSMKG 54

Query: 61  HQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKT 119
                      + ++    E+  + YDGL++PGG   P+ L + +  +  VR   ++GK 
Sbjct: 55  DIEP----QEKYRVDHVVSEVQVSDYDGLLLPGGTVNPDKLRLEEGAMKFVRDMYDAGKP 110

Query: 120 IASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATY 179
           IA+ICHG   L+   + +G K T++  +K  L  AGA W++      CV D  ++T    
Sbjct: 111 IAAICHGPWSLSETGIAQGLKMTSWSSLKRELTLAGAQWVD----EECVTDKGVVTSRKP 166

Query: 180 EGHPEFIRLFLKALGGTITGSDKR 203
           +  P F +  ++        S ++
Sbjct: 167 DDLPAFNKKIVEEFAEGDHSSRRK 190

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413} Length = 365

 Score =  221 bits (564), Expect = 1e-71
 Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 21/198 (10%)

Query: 3   NSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQ 62
           N+ G K+ V +L    +ED E ++P   L   G  V                       +
Sbjct: 6   NNSGKKK-VAILIEQAVEDTEFIIPCNGLKQAGFEVVVLGSRMN---------------E 49

Query: 63  TYSETRGH-NFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIA 121
            Y   RG  +   + T  E   +++D +VIPGG AP+ +  N + +  V++    GK +A
Sbjct: 50  KYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGMAPDKMRRNPNTVRFVQEAMEQGKLVA 109

Query: 122 SICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEG 181
           ++CHG  +L   D+++G++ T +  +   ++ AGA +++     A VVDGN+IT      
Sbjct: 110 AVCHGPQVLIEGDLLRGKQATGFIAISKDMMNAGADYLD----EALVVDGNLITSREPGD 165

Query: 182 HPEFIRLFLKALGGTITG 199
              F    L  LG     
Sbjct: 166 LAIFTTAILSRLGYGGKD 183

>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2 Length = 193

 Score =  212 bits (541), Expect = 2e-70
 Identities = 55/186 (29%), Positives = 87/186 (46%), Gaps = 19/186 (10%)

Query: 11  VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGH 70
           + +L  D  ED E   P       G  V                     G     +    
Sbjct: 26  IAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQA--------------GKTVKGKKGEA 71

Query: 71  NFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL 130
           +  ++ + DE+ P ++D L++PGG +P+YL  ++  +   R F NSGK + +ICHG  +L
Sbjct: 72  SVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLL 131

Query: 131 AAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGN-IITGATYEGHPEFIRLF 189
            +ADV++GRK TA  P+   +  AGA + + E     VVD + ++T  T +  P F R  
Sbjct: 132 ISADVIRGRKLTAVKPIIIDVKNAGAEFYDQE----VVVDKDQLVTSRTPDDLPAFNREA 187

Query: 190 LKALGG 195
           L+ LG 
Sbjct: 188 LRLLGA 193

>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482} Length = 175

 Score =  145 bits (369), Expect = 1e-44
 Identities = 31/195 (15%), Positives = 61/195 (31%), Gaps = 30/195 (15%)

Query: 7   GKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSE 66
            K+ V +L  + +         +A    G+S                        +    
Sbjct: 2   AKK-VAVLAVNPVNGCGLFQYLEAFFENGISYKVFAVSDT---------------KEIKT 45

Query: 67  TRGHNFALNATFDEI--DPTKYDGLVIPGGRAP------EYLAMNDSVIDLVRKFSNSGK 118
             G    ++     +     ++D LV   G A            N  ++++++ F   GK
Sbjct: 46  NSGMVLIVDDVIANLKGHEDEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGEKGK 105

Query: 119 TIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGAT 178
            +   C G ++     + KG+K   +P  KP +    A+           +DGN  T   
Sbjct: 106 MMIGHCAGAMMFDFTGITKGKKVAVHPLAKPAIQNGIATD------EKSEIDGNFFTAQD 159

Query: 179 YEGHPEFIRLFLKAL 193
                  +   ++AL
Sbjct: 160 ENTIWTMLPKVIEAL 174

>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster} Length = 190

 Score =  124 bits (313), Expect = 5e-36
 Identities = 45/189 (23%), Positives = 75/189 (39%), Gaps = 20/189 (10%)

Query: 8   KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSET 67
            +S L++     E+ E ++    L   G+ V  A                  G +    +
Sbjct: 5   SKSALVILAPGAEEMEFIIAADVLRRAGIKVTVAGL---------------NGGEAVKCS 49

Query: 68  RGHNFALNATFDEIDPTKYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHG 126
           R      + +  ++   K+D +V+PGG      +  +  V DL+R   + G  IA+IC  
Sbjct: 50  RDVQILPDTSLAQVASDKFDVVVLPGGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAA 109

Query: 127 QLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFI 186
             +LA   V  G+  T+YP +KP L+   +   +       V DGN+IT        EF 
Sbjct: 110 PTVLAKHGVASGKSLTSYPSMKPQLVNNYSYVDD----KTVVKDGNLITSRGPGTAYEFA 165

Query: 187 RLFLKALGG 195
               + L G
Sbjct: 166 LKIAEELAG 174

>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis} Length = 242

 Score =  120 bits (303), Expect = 4e-34
 Identities = 38/193 (19%), Positives = 66/193 (34%), Gaps = 20/193 (10%)

Query: 7   GKRSVLLLCG----DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQ 62
              S ++L G    D  E  EA++    L    V+     P K    V      +S G  
Sbjct: 23  ALNSAVILAGCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEV 82

Query: 63  TYSETRGHNFALNAT--FDEIDPTKYDGLVIPGGR------------APEYLAMNDSVID 108
                     A  +    ++I   ++D LVIPGG               E   +     +
Sbjct: 83  RNILVESARIARGSVYDIEQIRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKN 142

Query: 109 LVRKFSNSGKTIASICHGQLILAAA-DVVKGRKCTAYPPVKPVLIAAGASWIEPETMAAC 167
            VR+F N+ K I ++C    ++ A    +   K T       ++   G   ++  T+ + 
Sbjct: 143 AVREFYNAKKPIGAVCISPAVVVALLKDIAKVKVTIGEDSNGLIDKMGGVHVDCPTIKSV 202

Query: 168 VV-DGNIITGATY 179
                 I + + Y
Sbjct: 203 KDDVNRIFSCSAY 215

>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} Length = 208

 Score =  118 bits (299), Expect = 1e-33
 Identities = 33/172 (19%), Positives = 59/172 (34%), Gaps = 22/172 (12%)

Query: 7   GKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSE 66
            KR +L+      E+ E ++    L+  G  V  A                         
Sbjct: 9   SKR-ILVPVAHGSEEMETVIIVDTLVRAGFQVTMAAV---------------GDKLQVQG 52

Query: 67  TRGHNFALNATFDEIDPTKYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICH 125
           +RG       T +      +D L +PGG    +  A + +++ L+  FS  GK +A+IC 
Sbjct: 53  SRGVWLTAEQTLEACSAEAFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAICA 112

Query: 126 G-QLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 176
              L+ A      G + T +P     + +   S              +++T 
Sbjct: 113 TPALVFAKQQKFVGARMTCHPNFFDHIPSERLSRQR----VCYYATQHLLTS 160

>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis} Length = 212

 Score =  118 bits (297), Expect = 2e-33
 Identities = 33/195 (16%), Positives = 61/195 (31%), Gaps = 24/195 (12%)

Query: 8   KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSET 67
            +   L   + M D+E       L                 D+ P  V       T    
Sbjct: 5   TKKAFLYVFNTMSDWEYGYLIAEL---------NSGRYFKKDLAPLKVI------TVGAN 49

Query: 68  RG-----HNFALNA--TFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTI 120
           +          +    + DE      D L++PGG       ++  +++ + +    G  +
Sbjct: 50  KEMITTMGGLRIKPDISLDECTLESKDLLILPGGTTWS-EEIHQPILERIGQALKIGTIV 108

Query: 121 ASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYE 180
           A+IC     LA    +  RK T+       ++       +   +   V D N++T +   
Sbjct: 109 AAICGATDALANMGYLDTRKHTSNNLEYTKMVCPNYKGEKFYELGPAVSDANLVTASGI- 167

Query: 181 GHPEFIRLFLKALGG 195
              EF    LK +  
Sbjct: 168 APLEFAMEVLKKIDV 182

>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ... Length = 197

 Score =  115 bits (290), Expect = 2e-32
 Identities = 38/172 (22%), Positives = 68/172 (39%), Gaps = 21/172 (12%)

Query: 7   GKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSE 66
            KR  L++     E+ E ++P   +   G+ V  A                  G      
Sbjct: 3   SKR-ALVILAKGAEEMETVIPVDVMRRAGIKVTVAGL---------------AGKDPVQC 46

Query: 67  TRGHNFALNATFDEIDPT-KYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASIC 124
           +R      +A+ ++      YD +V+PGG    + L+ + +V +++++  N    IA+IC
Sbjct: 47  SRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIATIC 106

Query: 125 HGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 176
            G   L A ++  G K T +P  K  ++  G              DG I+T 
Sbjct: 107 AGPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSEN---RVEKDGLILTS 155

>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A Length = 194

 Score =  111 bits (280), Expect = 6e-31
 Identities = 35/173 (20%), Positives = 64/173 (36%), Gaps = 25/173 (14%)

Query: 11  VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGH 70
           V L   D  ++ E   P+       + +D             +        +    +R  
Sbjct: 7   VCLFVADGTDEIEFSAPWGIFKRAEIPID-------------SVYVGENKDRLVKMSRDV 53

Query: 71  NFALNATFDEIDPT-----KYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNS-GKTIASI 123
               N ++ EI        +YD  +IPGG    + L+    V  +V++F     K I  I
Sbjct: 54  EMYANRSYKEIPSADDFAKQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMI 113

Query: 124 CHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 176
           C G  + A    +  ++ T +P V+  L   G  +++       V++ N+IT 
Sbjct: 114 CAG-TLTAKTSGLPNKQITGHPSVRGQLEEGGYKYLD----QPVVLEENLITS 161

>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2 Length = 188

 Score =  110 bits (277), Expect = 1e-30
 Identities = 39/188 (20%), Positives = 59/188 (31%), Gaps = 23/188 (12%)

Query: 11  VLLLCGDYMEDYEAMVPFQALL-AFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRG 69
           + +       D+E  +   A     GV +  A P           V              
Sbjct: 4   IAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGM-------PVTSM----------- 45

Query: 70  HNFALNA--TFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 127
               +    ++D +DP   D LVIPGG + E       +  LV++F +  + +A IC   
Sbjct: 46  GGLKVTPDTSYDALDPVDIDALVIPGGLSWE-KGTAADLGGLVKRFRDRDRLVAGICAAA 104

Query: 128 LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIR 187
             L    V+     T           A             V DG ++T A       F  
Sbjct: 105 SALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAGS-APVSFAV 163

Query: 188 LFLKALGG 195
             LK+LG 
Sbjct: 164 EILKSLGL 171

>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2 Length = 205

 Score =  110 bits (276), Expect = 3e-30
 Identities = 37/171 (21%), Positives = 68/171 (39%), Gaps = 23/171 (13%)

Query: 10  SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRG 69
           S L+      E+ EA+     L+  G+ V  A                  G+   + +RG
Sbjct: 4   SALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASD-------------GNLAITCSRG 50

Query: 70  HNFALNATFDEIDPTKYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHG-Q 127
                +A   E+   +YD +V+PGG    E    +  +++ V++F  SG+ +A+IC    
Sbjct: 51  VKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPA 110

Query: 128 LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNI--ITG 176
            +L   D+      T +P +K  +      W++       V D  +  +T 
Sbjct: 111 TVLVPHDIFPIGNMTGFPTLKDKI--PAEQWLD----KRVVWDARVKLLTS 155

>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis} Length = 206

 Score =  106 bits (266), Expect = 7e-29
 Identities = 35/192 (18%), Positives = 58/192 (30%), Gaps = 31/192 (16%)

Query: 9   RSVLLLCGDYMEDYEAMVPFQALL-AFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSET 67
           +  L L  D   D+E +    AL      SV                V            
Sbjct: 4   KKALFLILDQYADWEGVYLASALNQREDWSVHTVSLDPI--------VSSI--------- 46

Query: 68  RGHNFALNA-TFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 126
               F  +      ++P  ++ LV+ GG    +   N  ++  V+        IA+IC  
Sbjct: 47  --GGFKTSVDYIIGLEPANFNLLVMIGG--DSWSNDNKKLLHFVKTAFQKNIPIAAICGA 102

Query: 127 QLILAAADVVKGRKCTAYPPVKPVLI---AAGASWIEPETMAACVVDGNIITGATYEGHP 183
              LA   ++     T                +S++E       V D N++T        
Sbjct: 103 VDFLAKNGLLNNHSHTGNFVYLWKDYKQYKPISSFVE----KQAVRDKNLVTANGT-API 157

Query: 184 EFIRLFLKALGG 195
           EF  L L+ +  
Sbjct: 158 EFTNLILEMIDF 169

>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A Length = 232

 Score =  102 bits (256), Expect = 4e-27
 Identities = 34/192 (17%), Positives = 58/192 (30%), Gaps = 19/192 (9%)

Query: 7   GKRSVLLLCG----DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQ 62
            K+  ++L G    D  E +EA++   A+   G       P K+  DV      ++    
Sbjct: 6   MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTET 65

Query: 63  TYSETRGHNFALNAT--FDEIDPTKYDGLVIPGGRAP-----------EYLAMNDSVIDL 109
                              + D  + D L++PGG                  ++  +  L
Sbjct: 66  RNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKAL 125

Query: 110 VRKFSNSGKTIASICHGQLILAAADVVKGR-KCTAYPPVKPVLIAAGASWIEPETMAACV 168
            +    +GK +  +C    +L        R           VL   GA  +        V
Sbjct: 126 AQAMHQAGKPLGFMCIAPAMLPKIFDFPLRLTIGTDIDTAEVLEEMGAEHVPCPVDDIVV 185

Query: 169 -VDGNIITGATY 179
             D  I+T   Y
Sbjct: 186 DEDNKIVTTPAY 197

>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2 Length = 224

 Score = 91.7 bits (228), Expect = 5e-23
 Identities = 41/194 (21%), Positives = 76/194 (39%), Gaps = 26/194 (13%)

Query: 23  EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEID 82
           E  VP+      G  V  A    + G+V       +    +++E         A   + D
Sbjct: 30  EFAVPYLVFQEKGYDVKVASI--QGGEVPLDPRSINEKDPSWAEAEAA-LKHTARLSKDD 86

Query: 83  PTKYDGLVIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD------V 135
              +D + +PGG    +    N+++  ++++F+  G+ IA++CHG   L  A       +
Sbjct: 87  AHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNATYKDGTPI 146

Query: 136 VKGRKCTAYP---------------PVKPVLIAAGASWIEPETMAA-CVVDGNIITGATY 179
           VKG+  T++                 ++  L   GA+++         V DGN+ITG   
Sbjct: 147 VKGKTVTSFTDEEEREVGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLITGQNP 206

Query: 180 EGHPEFIRLFLKAL 193
           +         + AL
Sbjct: 207 QSSRSTAEKVVAAL 220

>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A Length = 291

 Score = 92.8 bits (230), Expect = 7e-23
 Identities = 36/246 (14%), Positives = 69/246 (28%), Gaps = 44/246 (17%)

Query: 2   ANSKGGKRSVLLLC--GDYMEDY------------EAMVPFQALLAFGVSVDAACPGKKS 47
                GK  +L++     Y+               E ++P   L A G   + A      
Sbjct: 42  PKPYRGKHKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGLM 101

Query: 48  GDVCPTAV-HQSTGHQTYSETRGHNFALNATFDEIDPTK-----YDGLVIPGGRAPEY-L 100
                 A+ H+      + E     F       ++  +      Y  + +PGG      L
Sbjct: 102 TKFEYWAMPHKDEKVMPFFEQHKSLFRNPKKLADVVASLNADSEYAAIFVPGGHGALIGL 161

Query: 101 AMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD----VVKGRKCTAYPP---------- 146
             +  V   ++    + + + S+CHG     A       + G    A+P           
Sbjct: 162 PESQDVAAALQWAIKNDRFVISLCHGPAAFLALRHGDNPLNGYSICAFPDAADKQTPEIG 221

Query: 147 ---------VKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTI 197
                        L   G + I  +       D  ++TG +        +L  + +    
Sbjct: 222 YMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRKLLTGDSPFAANALGKLAAQEMLAAY 281

Query: 198 TGSDKR 203
            G +  
Sbjct: 282 AGLEHH 287

>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4} Length = 236

 Score = 86.9 bits (216), Expect = 3e-21
 Identities = 28/102 (27%), Positives = 40/102 (39%), Gaps = 6/102 (5%)

Query: 76  ATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADV 135
               E+     D ++I  G      A+ D       K   S + I SIC G  +L    +
Sbjct: 73  GHVSEVKE--QDVVLITSGYRGIPAALQDENFMSALKLDPSRQLIGSICAGSFVLHELGL 130

Query: 136 VKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 177
           +KG+K T  P  K VL   G    +       V++GNI T  
Sbjct: 131 LKGKKLTTNPDAKAVLQGMGGDVQD----LPLVIEGNIATAG 168

>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A Length = 243

 Score = 84.3 bits (208), Expect = 5e-20
 Identities = 35/213 (16%), Positives = 65/213 (30%), Gaps = 37/213 (17%)

Query: 16  GDYMEDYEAMVPFQALLAFGVSVDAACPGKKSG----DVCPTAVHQSTGHQTYSETRGHN 71
           G ++   EA+ PF      G  VD      K G     +    ++        ++    N
Sbjct: 25  GVFVV--EALHPFNTFRKEGFEVDFVSETGKFGWDEHSLAKDFLNGQDETDFKNKDSDFN 82

Query: 72  FALNAT--FDEIDPTKYDGLVIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQL 128
             L       E++   Y       G    +       + D+  +   +G  +A++CHG  
Sbjct: 83  KTLAKIKTPKEVNADDYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPA 142

Query: 129 ILAAA-------DVVKGRKCTAYP-------------------PVKPVLIAAGASWIEPE 162
           I            +++G+  T +                     V+ V    GA ++ P 
Sbjct: 143 IFDGLTDKKTGRPLIEGKSITGFTDVGETILGVDSILKAKNLATVEDVAKKYGAKYLAPV 202

Query: 163 TMAAC--VVDGNIITGATYEGHPEFIRLFLKAL 193
                  + DG ++TG             + AL
Sbjct: 203 GPWDDYSITDGRLVTGVNPASAHSTAVRSIDAL 235

>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} Length = 247

 Score = 76.2 bits (187), Expect = 5e-17
 Identities = 43/210 (20%), Positives = 71/210 (33%), Gaps = 35/210 (16%)

Query: 23  EAMVPFQALLAFGVSVDAACPGKKSG----DVCPTAVHQSTGHQTYSETRGHNFALNAT- 77
           EA+ PF  L A G  VD A      G     +    + +      +SE       +N   
Sbjct: 36  EALHPFNELTAAGFEVDVASETGTFGWDEHSLTQEYLSKEDEKVLHSEHNHFMEKMNKQV 95

Query: 78  --FDEIDPTKYDGLVIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD 134
               ++ P  Y  + + GG    Y       + ++ +     G  I ++CHG  +L    
Sbjct: 96  FKAGDLAPHDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGIH 155

Query: 135 ------VVKGRKCTAYP-------------------PVKPVLIAAGASWIEPETMAA--C 167
                 V+K +  T +                     +  +   A A ++ PE      C
Sbjct: 156 DENGDSVIKDKTVTGFTTKGEIMIKVIDKMREDHLHTIADMAQTANAEYVPPEDPWDDFC 215

Query: 168 VVDGNIITGATYEGHPEFIRLFLKALGGTI 197
            VDG I+TGA  +      R  +K   G +
Sbjct: 216 KVDGRIVTGANPQSATNTARDTIKVYEGIV 245

>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A* Length = 244

 Score = 75.5 bits (185), Expect = 9e-17
 Identities = 36/209 (17%), Positives = 63/209 (30%), Gaps = 41/209 (19%)

Query: 23  EAMVPFQALLAFGVSVDAACPGKKSGDVCP---------TAVHQSTGHQTYSETRGHNFA 73
           E +  F      G  VD       +G                      +T +       A
Sbjct: 30  EILRSFDTFEKHGFEVDFVSE---TGGFGWDEHYLPKSFIGGEDKMNFETKNSAFNKALA 86

Query: 74  LNATFDEIDPTKYDGLVIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAA 132
              T +E++ + Y       G    +      ++ D+  K   +G  IA+ICHG L+   
Sbjct: 87  RIKTANEVNASDYKVFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDG 146

Query: 133 A-------DVVKGRKCTAYP-------------------PVKPVLIAAGASWIEPETMAA 166
                    +++G+  T +P                    V+ V    GA ++ P     
Sbjct: 147 LIDIKTTRPLIEGKAITGFPLEGEIALGVDDILRSRKLTTVERVANKNGAKYLAPIHPWD 206

Query: 167 C--VVDGNIITGATYEGHPEFIRLFLKAL 193
              + DG ++TG             + AL
Sbjct: 207 DYSITDGKLVTGVNANSSYSTTIRAINAL 235

>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum} Length = 211

 Score = 67.2 bits (165), Expect = 5e-14
 Identities = 25/121 (20%), Positives = 42/121 (34%), Gaps = 6/121 (4%)

Query: 62  QTYSETRG-----HNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNS 116
              S   G         +  +    D      L +PGG        +D+ I+ +      
Sbjct: 37  NFISSDGGLVESSQKVRVETSLYTRDENIEKILFVPGGSGTREKVNDDNFINFIGNMVKE 96

Query: 117 GKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 176
            K I S+C G  +L+ A ++ G++ T        +       +     A  V DGNI T 
Sbjct: 97  SKYIISVCTGSALLSKAGILNGKRATTNKRSFKWVTEQNED-VLWVKEARWVKDGNIYTS 155

Query: 177 A 177
           +
Sbjct: 156 S 156

>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A Length = 231

 Score = 65.3 bits (160), Expect = 3e-13
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 4/106 (3%)

Query: 72  FALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 131
             L AT    D    D + IPGG     L  +   +  +R+ +   + + S+  G L+L 
Sbjct: 52  LVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVSTGSLVLG 111

Query: 132 AADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 177
           AA +++G++ T +     +L   GA  I        V DGN++TG 
Sbjct: 112 AAGLLQGKRATTHWAYHELLAPLGA--IPVH--ERVVRDGNLLTGG 153

>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV} Length = 253

 Score = 63.9 bits (156), Expect = 1e-12
 Identities = 37/103 (35%), Positives = 46/103 (44%), Gaps = 6/103 (5%)

Query: 76  ATFDEIDPTKYDGLVIPGGRAPEYLAMND-SVIDLVRKFSNSGKTIASICHGQLILAAAD 134
           ATF    P     L  PGG      A +D   +  +       K I S+C G LIL AA 
Sbjct: 76  ATFGTC-PRDLTVLFAPGGTDGTLAAASDAETLAFMADRGARAKYITSVCSGSLILGAAG 134

Query: 135 VVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 177
           ++KG K T++   +  L   GA  I  E  A  V D N ITGA
Sbjct: 135 LLKGYKATSHWSCRDALAGFGA--IPTE--ARVVRDRNRITGA 173

>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida} Length = 202

 Score = 52.2 bits (126), Expect = 1e-08
 Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 26/107 (24%)

Query: 82  DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKC 141
              + D LV+ GG           +  L+   +  G  +  + +G   L  A V+    C
Sbjct: 68  ALKELDLLVVCGGLRTP--LKYPELDRLLNDCAAHGMALGGLWNGAWFLGRAGVLDDYGC 125

Query: 142 T-----------AYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 177
           +             P  +          I P +     +D + ++ A
Sbjct: 126 SIHPEQRASLSERSPQTR----------ITPASF---TLDRDRLSAA 159

>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus} Length = 209

 Score = 52.2 bits (126), Expect = 1e-08
 Identities = 18/119 (15%), Positives = 41/119 (34%), Gaps = 25/119 (21%)

Query: 72  FALNATFDEIDPTKYDGLVIPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLI 129
            ++  T         + L+I     P      ++ ++ D +R+    G  I +I  G  +
Sbjct: 61  ISVQPTAQWQSFDFTNILIIGSIGDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGIFV 120

Query: 130 LAAADVVKGRKCT-----------AYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 177
           +A A +++  K              +P +           +  E     ++DGN+   +
Sbjct: 121 VAKAGLLQQNKAVMHSYFAHLFGELFPEIM----------LMTEQK--ALIDGNVYLSS 167

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	219
4hcj_A	177	THIJ/PFPI domain protein; structural genomics, PSI	100.0
3er6_A	209	Putative transcriptional regulator protein; struct	100.0
3ewn_A	253	THIJ/PFPI family protein; monomer, PSI nysgrc, str	100.0
3l18_A	168	Intracellular protease I; gatase1_PFPI_LIKE, hydro	100.0
3efe_A	212	THIJ/PFPI family protein; structural GEN csgid, ce	100.0
3gra_A	202	Transcriptional regulator, ARAC family; transcript	100.0
3noq_A	231	THIJ/PFPI family protein; DJ-1 superfamily, isocya	100.0
4e08_A	190	DJ-1 beta; flavodoxin-like fold, stress response,	100.0
2vrn_A	190	Protease I, DR1199; cysteine sulfenic acid, DJ-1/T	100.0
3mgk_A	211	Intracellular protease/amidase related enzyme (THI	100.0
3ot1_A	208	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate	100.0
4gdh_A	194	DJ-1, uncharacterized protein C22E12.03C; unknown	100.0
2rk3_A	197	Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha	100.0
1oi4_A	193	Hypothetical protein YHBO; PFPI/THIJ family, compl	100.0
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	100.0
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	100.0
3f5d_A	206	Protein YDEA; unknow protein, PSI-II, nysgrc, stru	100.0
2ab0_A	205	YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase	100.0
3bhn_A	236	THIJ/PFPI domain protein; structural genomics, joi	100.0
2fex_A	188	Conserved hypothetical protein; structural genomic	100.0
1u9c_A	224	APC35852; structural genomics, protein structure i	100.0
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	100.0
3kkl_A	244	Probable chaperone protein HSP33; peptidase, heat	100.0
3cne_A	175	Putative protease I; structural genomics, PSI-2, M	100.0
1rw7_A	243	YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe	100.0
3n7t_A	247	Macrophage binding protein; seattle structural gen	100.0
1n57_A	291	Chaperone HSP31, protein YEDU; alpha-beta sandwich	100.0
1vhq_A	232	Enhancing lycopene biosynthesis protein 2; structu	100.0
3l3b_A	242	ES1 family protein; ssgcid, NIH, niaid, SBRI, UW,	99.97
1sy7_A	715	Catalase 1; heme oxidation, singlet oxygen, oxidor	99.91
3ttv_A	753	Catalase HPII; heme orientation, oxidoreductase; H	99.84
2iuf_A	688	Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Pen	99.72
3ej6_A	688	Catalase-3; heme, hydrogen iron, metal-binding, ox	99.68
3d54_D	213	Phosphoribosylformylglycinamidine synthase 1; alph	99.29
3m3p_A	250	Glutamine amido transferase; structural genomics,	98.77
3l7n_A	236	Putative uncharacterized protein; glutamine amidot	98.74
1q7r_A	219	Predicted amidotransferase; structural genomics, Y	98.66
2nv0_A	196	Glutamine amidotransferase subunit PDXT; 3-layer(A	98.65
2iss_D	208	Glutamine amidotransferase subunit PDXT; (beta/alp	98.54
3ugj_A	1303	Phosphoribosylformylglycinamidine synthase; amidot	98.53
1ka9_H	200	Imidazole glycerol phosphtate synthase; riken stru	98.5
2ywd_A	191	Glutamine amidotransferase subunit PDXT; pyridoxin	98.45
1wl8_A	189	GMP synthase [glutamine-hydrolyzing] subunit A; tr	98.36
2abw_A	227	PDX2 protein, glutaminase; PLP-synthase, vitamin B	98.33
2ywj_A	186	Glutamine amidotransferase subunit PDXT; uncharact	98.23
1gpw_B	201	Amidotransferase HISH; lyase/transferase, complex	98.19
1qdl_B	195	Protein (anthranilate synthase (TRPG-SUBUNIT)); tr	98.17
4gud_A	211	Imidazole glycerol phosphate synthase subunit His;	98.13
1o1y_A	239	Conserved hypothetical protein TM1158; flavodoxin-	98.08
1a9x_B	379	Carbamoyl phosphate synthetase (small chain); amid	98.05
3fij_A	254	LIN1909 protein; 11172J, uncharacterized protein,	97.94
2vpi_A	218	GMP synthase; guanine monophosphate synthetase, ph	97.87
2a9v_A	212	GMP synthase; structural genomics, joint center fo	97.77
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	97.66
1l9x_A	315	Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO	97.61
3tqi_A	527	GMP synthase [glutamine-hydrolyzing]; ligase; 2.84	97.6
3l4e_A	206	Uncharacterized peptidase LMO0363; hypothetical pr	97.59
2v4u_A	289	CTP synthase 2; pyrimidine biosynthesis, glutamine	97.56
3uow_A	556	GMP synthetase; structural genomics consortium, SG	97.53
3r75_A	645	Anthranilate/para-aminobenzoate synthases compone;	97.47
2h2w_A	312	Homoserine O-succinyltransferase; TM0881, (EC 2.3.	97.46
1fy2_A	229	Aspartyl dipeptidase; serine protease, catalytic t	97.45
2vdj_A	301	Homoserine O-succinyltransferase; methionine biosy	97.3
2w7t_A	273	CTP synthetase, putative cytidine triphosphate syn	97.28
1gpm_A	525	GMP synthetase, XMP aminase; class I glutamine ami	97.05
1i1q_B	192	Anthranilate synthase component II; tryptophan bio	97.04
3nva_A	535	CTP synthase; rossman fold, nucleotide binding, LI	96.84
1s1m_A	545	CTP synthase; CTP synthetase, UTP:ammonia ligase (	96.54
1vco_A	550	CTP synthetase; tetramer, riken structural genomic	96.51
2ywb_A	503	GMP synthase [glutamine-hydrolyzing]; GMP syntheta	96.34
2vxo_A	697	GMP synthase [glutamine-hydrolyzing]; proto-oncoge	95.97
3en0_A	291	Cyanophycinase; serine protease, beta peptide spec	95.63
3rht_A	259	(gatase1)-like protein; structural genomics, PSI-b	91.24
2zuv_A	759	Lacto-N-biose phosphorylase; beta-alpha-barrel, TI	88.09
4e5v_A	281	Putative THUA-like protein; THUA-like proteins, tr	86.55

>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}

Probab=100.00  E-value=3e-43  Score=268.81  Aligned_cols=173  Identities=19%  Similarity=0.243  Sum_probs=159.9

Q ss_pred             CCCCCCCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCC
Q 027785            3 NSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEID   82 (219)
Q Consensus         3 ~~~~~~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~   82 (219)
                      +|.+.+++|+|++.+||++.|+..|+++|+++|++++++|++++                ++.++.|.++.+|..+++++
T Consensus         3 ~m~~t~~~v~il~~~gFe~~E~~~p~~~l~~ag~~V~~~s~~~~----------------~v~~~~G~~v~~d~~l~~v~   66 (177)
T 4hcj_A            3 AMGKTNNILYVMSGQNFQDEEYFESKKIFESAGYKTKVSSTFIG----------------TAQGKLGGMTNIDLLFSEVD   66 (177)
T ss_dssp             --CCCCEEEEECCSEEECHHHHHHHHHHHHHTTCEEEEEESSSE----------------EEEETTSCEEEECEEGGGCC
T ss_pred             ccccCCCEEEEECCCCccHHHHHHHHHHHHHCCCEEEEEECCCC----------------eEeeCCCCEEecCccHHHCC
Confidence            34433566788889999999999999999999999999999876                68889999999999999999


Q ss_pred             CCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCC
Q 027785           83 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPE  162 (219)
Q Consensus        83 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~  162 (219)
                      +.+||+|+||||.++..++.++.+++||+++++++|+|++||+|+++|+++|||+||++|+||..++.+++.|+.|++.+
T Consensus        67 ~~~yD~liiPGG~g~~~l~~~~~~~~~l~~~~~~~k~iaaIC~g~~~La~aGlL~gr~~T~~~~~~~~l~~~ga~~~~~~  146 (177)
T 4hcj_A           67 AVEFDAVVFVGGIGCITLWDDWRTQGLAKLFLDNQKIVAGIGSGVVIMANAKILEEINVTCLSADESHVRHGNANIMSEN  146 (177)
T ss_dssp             GGGCSEEEECCSGGGGGGTTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECSSS
T ss_pred             HhHCCEEEECCCccHHHHhhCHHHHHHHHHHHHhCCEEEEecccHHHHHHCCCCCCCEEEEeCCHHHHHHhCCCEEecCC
Confidence            89999999999999888889999999999999999999999999999999999999999999999999999999998776


Q ss_pred             CcceEEEcCCeEeCCCCCCHHHHHHHHHHHHcc
Q 027785          163 TMAACVVDGNIITGATYEGHPEFIRLFLKALGG  195 (219)
Q Consensus       163 ~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~  195 (219)
                          +|+|||+|||+|+.++.+|++++|+.|.+
T Consensus       147 ----vV~Dg~liTs~g~~~~~~~a~~lve~L~s  175 (177)
T 4hcj_A          147 ----VVVSGNIVTANGPTSSKDFANAVVGVLNS  175 (177)
T ss_dssp             ----EEEETTEEEECSGGGHHHHHHHHHHHHHT
T ss_pred             ----EEEECCEEECCCHHHHHHHHHHHHHHHhc
Confidence                89999999999999999999999999865

>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}

Probab=100.00  E-value=6.2e-42  Score=268.78  Aligned_cols=188  Identities=14%  Similarity=0.145  Sum_probs=158.4

Q ss_pred             CCCCCCCCCEEEEEecCCCCchhhHHHHHHHHhCC-------CeEEEecCCCCCCCCCCcccccCCCcceeccccCCccc
Q 027785            1 MANSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFG-------VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFA   73 (219)
Q Consensus         1 ~~~~~~~~~kv~il~~~g~~~~e~~~~~~~l~~ag-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~   73 (219)
                      |+.|++.++||+|+++|||++.|+..+.++|+.+|       |++.++|.+++                ++.++.|+.+.
T Consensus         1 m~~~~~~~~~v~ill~~g~~~~e~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~----------------~v~~~~G~~v~   64 (209)
T 3er6_A            1 MSLTNKKNLRVVALAPTGRYFASIISSLEILETAAEFAEFQGFMTHVVTPNNR----------------PLIGRGGISVQ   64 (209)
T ss_dssp             ------CCEEEEEECCCTTSCHHHHHHHHHHHHHHHHTTCSCEEEEEECTTSS----------------CEEETTTEEEE
T ss_pred             CCCCCCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC----------------ceecCCCeEEe
Confidence            66777778999999999999999999999999875       89999999876                68889999999


Q ss_pred             cccCccCCCCCCccEEEEcCCCCccc--ccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHH
Q 027785           74 LNATFDEIDPTKYDGLVIPGGRAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVL  151 (219)
Q Consensus        74 ~~~~~~~~~~~~~D~liipGG~~~~~--~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l  151 (219)
                      +|..++++  .+||+||||||.++..  +..++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.|
T Consensus        65 ~d~~~~~~--~~~D~livpGg~~~~~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~aGLL~gr~aTth~~~~~~l  142 (209)
T 3er6_A           65 PTAQWQSF--DFTNILIIGSIGDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGIFVVAKAGLLQQNKAVMHSYFAHLF  142 (209)
T ss_dssp             CSSCGGGC--SCCSEEEECCCSCHHHHGGGSCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHTCCSSCEECCCHHHHHHH
T ss_pred             CCcCcccc--CCCCEEEECCCCCchhhhccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHcCCCCCCeeEECHHHHHHH
Confidence            99999986  4899999999987643  3678999999999999999999999999999999999999999999999999


Q ss_pred             HH-CCCeEecCCCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHccccccc--cceEEEec
Q 027785          152 IA-AGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGS--DKRILFLC  208 (219)
Q Consensus       152 ~~-~g~~~~~~~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~~~~~~--~~~~~~~~  208 (219)
                      ++ +|...+..+.  .+|+|||+|||+|+.+++||++++|+++.|+..++  ++.+++..
T Consensus       143 ~~~~p~~~~~~~~--~~v~Dg~iiTs~G~~a~~dlal~li~~~~G~~~A~~va~~l~~~~  200 (209)
T 3er6_A          143 GELFPEIMLMTEQ--KALIDGNVYLSSGPYSHSSVMLEIVEEYFGKHTRNLGNQFLSTIE  200 (209)
T ss_dssp             HHHCTTSEECTTC--SEEEETTEEEECCSSCCHHHHHHHHHHHHCHHHHHHHHHHTTC--
T ss_pred             HHHCCCcEEecCC--EEEEeCCEEECCcHHHHHHHHHHHHHHHhCHHHHHHHHHHhccCc
Confidence            86 6655443321  39999999999999999999999999988885544  55555544

>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}

Probab=100.00  E-value=2.4e-41  Score=272.02  Aligned_cols=182  Identities=22%  Similarity=0.233  Sum_probs=163.1

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHH-HhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQAL-LAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKY   86 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l-~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~   86 (219)
                      ++||+|+++|||+..|+..++++| +.+++++.++|++++                ++.++.|+.+.+|..+++++ .+|
T Consensus        23 ~~~I~ill~~gf~~~e~~~p~dvl~~~~~~~v~~vs~~~~----------------~V~~~~G~~i~~d~~l~~~~-~~y   85 (253)
T 3ewn_A           23 DEQIAMLVYPGMTVMDLVGPHCMFGSLMGAKIYIVAKSLD----------------PVTSDAGLAIVPTATFGTCP-RDL   85 (253)
T ss_dssp             CCEEEEECCTTBCHHHHHHHHHHHTTSTTCEEEEEESSSS----------------CEECTTSCEECCSEETTTSC-SSC
T ss_pred             CeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEeCCCC----------------eEEcCCCCEEeCCcCHHHcC-CCC
Confidence            479999999999999999999999 578999999999876                57888899999999999876 479


Q ss_pred             cEEEEcCCC-CcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcc
Q 027785           87 DGLVIPGGR-APEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMA  165 (219)
Q Consensus        87 D~liipGG~-~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~  165 (219)
                      |+||||||. ++..+..++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.|+++|.++++..   
T Consensus        86 D~liVPGG~~g~~~l~~~~~l~~~Lr~~~~~gk~IaaICtG~~lLa~AGLL~Gr~aTthw~~~~~l~~~~~~~~~~~---  162 (253)
T 3ewn_A           86 TVLFAPGGTDGTLAAASDAETLAFMADRGARAKYITSVCSGSLILGAAGLLKGYKATSHWSCRDALAGFGAIPTEAR---  162 (253)
T ss_dssp             SEEEECCBSHHHHHHTTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHTTCCTTCEECCCTTTGGGGGGGTCEECCSS---
T ss_pred             CEEEECCCccchhhhccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHcCCCCCCEEecCHHHHHHHHhCCCeeeCCc---
Confidence            999999998 7766778999999999999999999999999999999999999999999999999988898887543   


Q ss_pred             eEEEcCCeEeCCCCCCHHHHHHHHHHHHccccccc--cceEEEecCC
Q 027785          166 ACVVDGNIITGATYEGHPEFIRLFLKALGGTITGS--DKRILFLCGV  210 (219)
Q Consensus       166 ~~v~dg~liT~~g~~s~~~~~l~li~~l~~~~~~~--~~~~~~~~~~  210 (219)
                       +|+|||+|||+|+++++||+++||+++.|+..++  ++.++|-.+.
T Consensus       163 -vV~Dg~iiTs~G~~a~idlaL~lv~~l~G~~~A~~va~~l~~~~~~  208 (253)
T 3ewn_A          163 -VVRDRNRITGAGVTAGLDFGLSMVAELRDQTYAECAQLMSEYDPDP  208 (253)
T ss_dssp             -EEEETTEEEECSTTHHHHHHHHHHHHHSCHHHHHHHHHHTTCCCCC
T ss_pred             -EEEECCEEECCCHHHHHHHHHHHHHHHcCHHHHHHHHHhcccCCCC
Confidence             8999999999999999999999999999986544  6655554443

>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A

Probab=100.00  E-value=7.1e-41  Score=254.27  Aligned_cols=166  Identities=36%  Similarity=0.620  Sum_probs=154.4

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      ++||+|+++|||+..|+..++++|+.+|++++++|++++                ++.++.|..+.++..++++++.+||
T Consensus         2 ~~ki~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~----------------~v~~~~g~~i~~~~~~~~~~~~~~D   65 (168)
T 3l18_A            2 SMKVLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRG----------------KITGKHGYSVNVDLTFEEVDPDEFD   65 (168)
T ss_dssp             CCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSE----------------EEECTTSCEEEECEEGGGCCGGGCS
T ss_pred             CcEEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEECCCC----------------EEecCCCcEEeccCChhHCCHhhCC
Confidence            579999999999999999999999999999999999876                6888899999999999998777899


Q ss_pred             EEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcceE
Q 027785           88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAAC  167 (219)
Q Consensus        88 ~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~~~  167 (219)
                      +|+||||.++..+..++.+.+||+++++++++|+++|+|+++|+++|+|+||++|+||...+.+++.+..+++..    +
T Consensus        66 ~livpGG~~~~~~~~~~~l~~~l~~~~~~~k~i~aiC~G~~~La~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~~----~  141 (168)
T 3l18_A           66 ALVLPGGKAPEIVRLNEKAVMITRRMFEDDKPVASICHGPQILISAKVLKGRRGTSTITIRDDVINAGAEWIDAE----V  141 (168)
T ss_dssp             EEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCSS----C
T ss_pred             EEEECCCcCHHHhccCHHHHHHHHHHHHCCCEEEEECHhHHHHHHCCccCCCEEEeCccHHHHHHhCCCEEecCC----E
Confidence            999999987766678999999999999999999999999999999999999999999999999999877776543    8


Q ss_pred             EEcCCeEeCCCCCCHHHHHHHHHHHH
Q 027785          168 VVDGNIITGATYEGHPEFIRLFLKAL  193 (219)
Q Consensus       168 v~dg~liT~~g~~s~~~~~l~li~~l  193 (219)
                      |+|||+|||+|+.++.+|++++|++|
T Consensus       142 v~dg~iiT~~g~~~~~d~~l~li~~l  167 (168)
T 3l18_A          142 VVDGNWVSSRHPGDLYAWMREFVKLL  167 (168)
T ss_dssp             EEETTEEEECSGGGHHHHHHHHGGGC
T ss_pred             EEeCCEEEcCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999999875

>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}

Probab=100.00  E-value=4e-41  Score=264.77  Aligned_cols=190  Identities=18%  Similarity=0.190  Sum_probs=166.5

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHH--------hCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCcc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALL--------AFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFD   79 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~--------~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~   79 (219)
                      ++||+|+++|||++.|+..+.++|+        +++++++++|++++                ++.++.|..+.+|..++
T Consensus         5 m~~v~ill~~g~~~~e~~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~----------------~v~~~~G~~i~~d~~~~   68 (212)
T 3efe_A            5 TKKAFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKE----------------MITTMGGLRIKPDISLD   68 (212)
T ss_dssp             CCCEEEEECTTCCTTTTHHHHHHHHHCTTSCTTCCCCCEEEEESSSC----------------CEECTTCCEECCSEEGG
T ss_pred             ccEEEEEECCCccHHHHHHHHHHHHhhhccccCCCCeEEEEEECCCC----------------eEEcCCCCEEecCcCHH
Confidence            4799999999999999999999999        67899999999876                57888999999999999


Q ss_pred             CCCCCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCC-CCHHHHHH-CCC-
Q 027785           80 EIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYP-PVKPVLIA-AGA-  156 (219)
Q Consensus        80 ~~~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~-~~~~~l~~-~g~-  156 (219)
                      ++++.+||+|+||||.+.. ...++.+++||+++++++++|++||+|+++|+++|||+||++|+|| ...+.+++ ++. 
T Consensus        69 ~~~~~~~D~livpGG~~~~-~~~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~aGlL~Gr~~Tt~~~~~~~~l~~~~p~~  147 (212)
T 3efe_A           69 ECTLESKDLLILPGGTTWS-EEIHQPILERIGQALKIGTIVAAICGATDALANMGYLDTRKHTSNNLEYTKMVCPNYKGE  147 (212)
T ss_dssp             GCCCCTTCEEEECCCSCTT-SGGGHHHHHHHHHHHHHTCEEEEETHHHHHHHHTTTTSSSCBCCSCHHHHHHHCTTCCCT
T ss_pred             HCCccCCCEEEECCCCccc-cccCHHHHHHHHHHHHCCCEEEEEcHHHHHHHHcCCCCCCeeecCCHHHHHHHHhhCCCc
Confidence            9887899999999998754 4678999999999999999999999999999999999999999997 77777765 553 


Q ss_pred             -eEecCCCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHccccccc--cceEEEecCCchhhccccC
Q 027785          157 -SWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGS--DKRILFLCGVSFCFQNLLE  219 (219)
Q Consensus       157 -~~~~~~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~  219 (219)
                       .+.+.    .+|+|||+|||+|+. ++||++++|+++.++.+.+  ++..++..+++..|++||+
T Consensus       148 ~~~~~~----~~V~Dg~iiTs~G~~-~~d~al~li~~l~g~~a~~va~~~~~~~~g~~~~~~~~~~  208 (212)
T 3efe_A          148 KFYELG----PAVSDANLVTASGIA-PLEFAMEVLKKIDVFTLDALHSWYNLNKTHKPEYFFQLMN  208 (212)
T ss_dssp             TTBCCC----SEEEETTEEEECTTC-HHHHHHHHHHHHTCSCHHHHHHHHHHHHHCCTHHHHHHHT
T ss_pred             cccCCC----cEEEECCEEECCCch-HHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCHHHHHHHHh
Confidence             34443    399999999999985 9999999999999985555  5556666699999999985

>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}

Probab=100.00  E-value=2.8e-41  Score=263.72  Aligned_cols=179  Identities=15%  Similarity=0.202  Sum_probs=156.8

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCC------CeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCC
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFG------VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEI   81 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~   81 (219)
                      ++||+|+++|||++.|+..++++|+.+|      |++.++|++++                ++.++.|+++.+| +++++
T Consensus         5 ~~~v~ill~~g~~~~e~~~~~dvl~~a~~~~~~~~~v~~vs~~~~----------------~v~~~~G~~i~~d-~l~~~   67 (202)
T 3gra_A            5 PYRVDFILLEHFSMASFTVAMDVLVTANLLRADSFQFTPLSLDGD----------------RVLSDLGLELVAT-ELSAA   67 (202)
T ss_dssp             CEEEEEEECTTBCHHHHHHHHHHHHHHHHHSTTSEEEEEEESSSS----------------EEEBTTSCEEECE-ECCSG
T ss_pred             cEEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCC----------------ceEcCCCCEEECC-Ccccc
Confidence            6899999999999999999999999986      99999999876                6888999999999 99987


Q ss_pred             CCCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHH-CCCeEec
Q 027785           82 DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-AGASWIE  160 (219)
Q Consensus        82 ~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~-~g~~~~~  160 (219)
                      +..+||+||||||.++... . +.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.|++ +|...+.
T Consensus        68 ~~~~~D~livpGG~~~~~~-~-~~l~~~l~~~~~~g~~iaaIC~G~~~La~aGLL~gr~aTth~~~~~~l~~~~p~~~~~  145 (202)
T 3gra_A           68 ALKELDLLVVCGGLRTPLK-Y-PELDRLLNDCAAHGMALGGLWNGAWFLGRAGVLDDYGCSIHPEQRASLSERSPQTRIT  145 (202)
T ss_dssp             GGTTCSEEEEECCTTCCSC-C-TTHHHHHHHHHHHTCEEEEETTHHHHHHHHTCCTTEEECCCGGGHHHHHHHCTTEEEC
T ss_pred             cCCCCCEEEEeCCCchhhc-c-HHHHHHHHHHHhhCCEEEEECHHHHHHHHcCCcCCCcEEeChhHHHHHHHHCCCCEec
Confidence            6679999999999876543 4 89999999999999999999999999999999999999999999999987 6765554


Q ss_pred             CCCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHccccccc--cceEEEec
Q 027785          161 PETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGS--DKRILFLC  208 (219)
Q Consensus       161 ~~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~~~~~~--~~~~~~~~  208 (219)
                      ++.   +|+|||+|||+|+++++||++++|+++.|+..++  ++.++|-.
T Consensus       146 ~~~---~v~dg~iiTs~G~~a~~dlal~li~~~~G~~~A~~va~~l~~~~  192 (202)
T 3gra_A          146 PAS---FTLDRDRLSAASPNGAMELMLGLVRRLYGDGLAEGVEEILSFSG  192 (202)
T ss_dssp             SSS---EEEETTEEEESSHHHHHHHHHHHHHHHHCHHHHHHHHHHHC---
T ss_pred             CCe---EEEeCCEEECCCHHHHHHHHHHHHHHHhCHHHHHHHHHHhCcCc
Confidence            443   9999999999999999999999999988885544  55555543

>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A

Probab=100.00  E-value=7.4e-41  Score=266.26  Aligned_cols=182  Identities=19%  Similarity=0.268  Sum_probs=163.4

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHh-CCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLA-FGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKY   86 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~-ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~   86 (219)
                      ++||+|+++|||+..|+..++++|+. ++++++++|++++                ++.++.|+.+.+|.++++++  +|
T Consensus         5 ~~~V~ill~~gf~~~e~~~p~evl~~~~~~~v~~vs~~~~----------------~V~~~~G~~v~~d~~l~~~~--~~   66 (231)
T 3noq_A            5 AVQIGFLLFPEVQQLDLTGPHDVLASLPDVQVHLIWKEPG----------------PVVASSGLVLQATTSFADCP--PL   66 (231)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHTTSTTEEEEEEESSSE----------------EEECTTSCEEEECEETTTCC--CC
T ss_pred             cEEEEEEEeCCCcHHHHHHHHHHHHcCCCCEEEEEECCCC----------------cEEcCCCCEEecccChhHCC--cC
Confidence            47999999999999999999999999 7999999999876                68888999999999999864  79


Q ss_pred             cEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcce
Q 027785           87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAA  166 (219)
Q Consensus        87 D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~~  166 (219)
                      |+||||||.++..+..++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.++++|.++++..    
T Consensus        67 D~livpGG~g~~~~~~~~~l~~~lr~~~~~g~~v~aiC~G~~~La~aGLL~Gr~aTthw~~~~~l~~~~~~~~~~~----  142 (231)
T 3noq_A           67 DVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVSTGSLVLGAAGLLQGKRATTHWAYHELLAPLGAIPVHER----  142 (231)
T ss_dssp             SEEEECCSTTHHHHTTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHTTTTTTCEECCCGGGGGGTGGGTCEECCSS----
T ss_pred             CEEEECCCCChhhhccCHHHHHHHHHHHhcCCEEEEECHHHHHHHHcCCCCCceeeecHhHHHHHHhCCCeeeCCc----
Confidence            9999999988766778999999999999999999999999999999999999999999999999988898886543    


Q ss_pred             EEEcCCeEeCCCCCCHHHHHHHHHHHHccccccc--cceEEEecCCc
Q 027785          167 CVVDGNIITGATYEGHPEFIRLFLKALGGTITGS--DKRILFLCGVS  211 (219)
Q Consensus       167 ~v~dg~liT~~g~~s~~~~~l~li~~l~~~~~~~--~~~~~~~~~~~  211 (219)
                      +|+|||+|||+|+++++||++++|+++.|+...+  ++.++|-.+.+
T Consensus       143 vV~Dg~iiTs~G~~a~~d~aL~li~~~~G~~~A~~va~~l~~~~~~p  189 (231)
T 3noq_A          143 VVRDGNLLTGGGITAGIDFALTLAAELFDAATAQRVQLQLEYAPAPP  189 (231)
T ss_dssp             EEEETTEEEECSTTHHHHHHHHHHHHHSCHHHHHHHHHHTTCCCCCS
T ss_pred             EEEeCCEEECCCHHHHHHHHHHHHHHHcCHHHHHHHHHhceeCCCCC
Confidence            8999999999999999999999999999986544  66666654433

>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}

Probab=100.00  E-value=1.3e-40  Score=257.77  Aligned_cols=173  Identities=26%  Similarity=0.408  Sum_probs=155.1

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCC-CCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGK-KSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKY   86 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~   86 (219)
                      +|||+|+++|||++.|+..++++|+++|++++++|+++ +                ++.++.|..+.+|..++++++.+|
T Consensus         5 ~kkv~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~----------------~v~~~~g~~i~~d~~l~~~~~~~~   68 (190)
T 4e08_A            5 SKSALVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGE----------------AVKCSRDVQILPDTSLAQVASDKF   68 (190)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSSS----------------CEECTTSCEEECSEETGGGTTCCC
T ss_pred             CcEEEEEECCCchHHHHHHHHHHHHHCCCEEEEEECCCCc----------------ceecCCCcEEECCCCHHHCCcccC
Confidence            47999999999999999999999999999999999987 4                577889999999999999877789


Q ss_pred             cEEEEcCCC-CcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcc
Q 027785           87 DGLVIPGGR-APEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMA  165 (219)
Q Consensus        87 D~liipGG~-~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~  165 (219)
                      |+|+||||. +...+..++.+.+||+++++++++|+++|+|+++|+++|||+||++|+||...+.+++ +..+++..   
T Consensus        69 D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~k~i~aiC~G~~~La~aGlL~g~~~T~~~~~~~~l~~-~~~~~~~~---  144 (190)
T 4e08_A           69 DVVVLPGGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAAPTVLAKHGVASGKSLTSYPSMKPQLVN-NYSYVDDK---  144 (190)
T ss_dssp             SEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHTTCSTTCEECCCGGGGGGSSS-SSEECSSC---
T ss_pred             CEEEECCCChHHHHhhhCHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCcCCCeEEeCcCHHHHHhc-CCcccCCC---
Confidence            999999995 4545677899999999999999999999999999999999999999999999887766 34566433   


Q ss_pred             eEEEcCCeEeCCCCCCHHHHHHHHHHHHccccccc
Q 027785          166 ACVVDGNIITGATYEGHPEFIRLFLKALGGTITGS  200 (219)
Q Consensus       166 ~~v~dg~liT~~g~~s~~~~~l~li~~l~~~~~~~  200 (219)
                      .+|+|||+|||+|+.+++||++++|+++.|+..++
T Consensus       145 ~~v~dg~iiTs~g~~a~~d~al~li~~~~g~~~a~  179 (190)
T 4e08_A          145 TVVKDGNLITSRGPGTAYEFALKIAEELAGKEKVQ  179 (190)
T ss_dssp             SEEEETTEEEECSGGGHHHHHHHHHHHHHCHHHHH
T ss_pred             cEEEECCEEECCChHHHHHHHHHHHHHhcCHHHHH
Confidence            39999999999999999999999999998885543

>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}

Probab=100.00  E-value=1.1e-39  Score=252.40  Aligned_cols=173  Identities=27%  Similarity=0.544  Sum_probs=155.1

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceecc-----ccCCccccccCccCCC
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSE-----TRGHNFALNATFDEID   82 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~i~~~~~~~~~~   82 (219)
                      ++||+|++++||+..|+..++++|+.+|+++++++++++                ++.+     +.|..+.++..+++++
T Consensus         9 ~~~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~----------------~v~~~~~~~~~g~~v~~~~~~~~~~   72 (190)
T 2vrn_A            9 GKKIAILAADGVEEIELTSPRAAIEAAGGTTELISLEPG----------------EIQSMKGDIEPQEKYRVDHVVSEVQ   72 (190)
T ss_dssp             TCEEEEECCTTCBHHHHHHHHHHHHHTTCEEEEEESSSS----------------EEEEEETTTEEEEEEECSEEGGGCC
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEecCCC----------------ccccccccccCCcEEeCCCChhhCC
Confidence            689999999999999999999999999999999999876                3444     6688899999999887


Q ss_pred             CCCccEEEEcCCC-CcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecC
Q 027785           83 PTKYDGLVIPGGR-APEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEP  161 (219)
Q Consensus        83 ~~~~D~liipGG~-~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~  161 (219)
                      +.+||+||||||. ++..+..++.+++||+++++++++|+++|+|+++|+++|||+||++|+||...+.|++.+.++++.
T Consensus        73 ~~~~D~livpGG~~~~~~~~~~~~l~~~l~~~~~~gk~i~aiC~G~~~La~aGlL~gr~~Tt~~~~~~~l~~~~~~~~~~  152 (190)
T 2vrn_A           73 VSDYDGLLLPGGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSETGIAQGLKMTSWSSLKRELTLAGAQWVDE  152 (190)
T ss_dssp             GGGCSEEEECCCTHHHHHHTTCHHHHHHHHHHHHTTCCEEEC-CTTHHHHHTTTTTTCEECCCGGGHHHHHHTTCEECCC
T ss_pred             hhhCCEEEECCCchhHHHHhhCHHHHHHHHHHHHcCCEEEEECHhHHHHHhCcccCCcEEecCccHHHHHHHcCCeEECC
Confidence            7789999999997 555567789999999999999999999999999999999999999999999999999888888876


Q ss_pred             CCcceEEEcCCeEeCCCCCCHHHHHHHHHHHH-ccccccc
Q 027785          162 ETMAACVVDGNIITGATYEGHPEFIRLFLKAL-GGTITGS  200 (219)
Q Consensus       162 ~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l-~~~~~~~  200 (219)
                      .    +++|||+|||+|+.++.+|++++|+++ +++..++
T Consensus       153 ~----~v~Dg~iiTs~g~~s~~~~~l~li~~l~~g~~~a~  188 (190)
T 2vrn_A          153 E----CVTDKGVVTSRKPDDLPAFNKKIVEEFAEGDHSSR  188 (190)
T ss_dssp             S----CEEETTEEECSSGGGHHHHHHHHHHHHHHCCCGGG
T ss_pred             C----EEEcCCEEEcCChhhHHHHHHHHHHHHhccccccc
Confidence            5    466999999999999999999999988 7775543

>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}

Probab=100.00  E-value=4.2e-40  Score=258.70  Aligned_cols=179  Identities=16%  Similarity=0.263  Sum_probs=159.0

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhC--CCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCC
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAF--GVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTK   85 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~a--g~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~   85 (219)
                      ++||+|+++|||++.|+..++++|+.+  ++++.++|++++                ++.++.|..+.+|..+++.+  +
T Consensus         4 ~~~V~ill~~g~~~~e~~~~~~~l~~a~~~~~v~~vs~~~~----------------~V~~~~G~~v~~d~~~~~~~--~   65 (211)
T 3mgk_A            4 SYRIDVLLFNKFETLDVFGPVEIFGNLQDDFELNFISSDGG----------------LVESSQKVRVETSLYTRDEN--I   65 (211)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHTTCTTTEEEEEECSSCE----------------EEECTTCCEEEEBCCCCCSS--S
T ss_pred             ceEEEEEEeCCcchhHHHHHHHHHHhCCCceEEEEEECCCC----------------eEecCCCcEEEeccchhhCC--C
Confidence            579999999999999999999999998  499999999876                68889999999999998764  6


Q ss_pred             ccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHC-CC-eEecCCC
Q 027785           86 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAA-GA-SWIEPET  163 (219)
Q Consensus        86 ~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~-g~-~~~~~~~  163 (219)
                      ||+|+||||.++..+..++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.|++. +. .+.... 
T Consensus        66 ~D~livpGG~~~~~~~~~~~~~~~l~~~~~~~k~iaaiC~G~~~La~aGLL~Gr~~Tth~~~~~~l~~~~p~~~~~~~~-  144 (211)
T 3mgk_A           66 EKILFVPGGSGTREKVNDDNFINFIGNMVKESKYIISVCTGSALLSKAGILNGKRATTNKRSFKWVTEQNEDVLWVKEA-  144 (211)
T ss_dssp             EEEEEECCSTHHHHHTTCHHHHHHHHHHHHHCSEEEECTTHHHHHHHTTTTTTSEECCCSTTHHHHHTTCTTSEECSSC-
T ss_pred             CCEEEECCCcchhhhcCCHHHHHHHHHHHHcCCEEEEEchHHHHHHhcCCcCCCeEeeChhHHHHHHHHCCCcEEecCC-
Confidence            999999999877666788999999999999999999999999999999999999999999999999884 54 444444 


Q ss_pred             cceEEEcCCeEeCCCCCCHHHHHHHHHHHHccccccc--cceEEEe
Q 027785          164 MAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGS--DKRILFL  207 (219)
Q Consensus       164 ~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~~~~~~--~~~~~~~  207 (219)
                        .+|+|||+|||+|+.+++||++++|+++.|+..++  ++.++|.
T Consensus       145 --~~v~Dg~iiTs~G~~a~~dlal~lv~~~~G~~~A~~va~~l~~~  188 (211)
T 3mgk_A          145 --RWVKDGNIYTSSGVSAGIDMTLGFIEDLIGKEKALEISRSIEYF  188 (211)
T ss_dssp             --SEEEETTEEEECSHHHHHHHHHHHHHHHHCHHHHHHHHHHHTCC
T ss_pred             --eEEEeCCEEECCCHHHHHHHHHHHHHHHhCHHHHHHHHHhcEEC
Confidence              39999999999999999999999999988885544  6666654

>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0

Probab=100.00  E-value=2.1e-40  Score=259.99  Aligned_cols=189  Identities=19%  Similarity=0.300  Sum_probs=161.5

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCC-CCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGK-KSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKY   86 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~   86 (219)
                      ++||+|+++|||+..|+..++++|+.+|++++++|+++ +                ++.++.|..+.++..++++++.+|
T Consensus         9 ~~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~g~~----------------~v~~~~G~~v~~d~~l~~~~~~~~   72 (208)
T 3ot1_A            9 SKRILVPVAHGSEEMETVIIVDTLVRAGFQVTMAAVGDKL----------------QVQGSRGVWLTAEQTLEACSAEAF   72 (208)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSCS----------------EEECTTSCEEECSEEGGGCCGGGC
T ss_pred             CCeEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCc----------------ceecCCCcEEeCCCCHHHCCCcCC
Confidence            57999999999999999999999999999999999985 3                688889999999999999877899


Q ss_pred             cEEEEcCCC-CcccccCChHHHHHHHHHHhcCCeEEEEehhH-HHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCc
Q 027785           87 DGLVIPGGR-APEYLAMNDSVIDLVRKFSNSGKTIASICHGQ-LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETM  164 (219)
Q Consensus        87 D~liipGG~-~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~-~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~  164 (219)
                      |+||||||. ++..+..++.+++||+++++++|+|++||+|+ ++|+++|||+||++|+||...+.+.  +..+.+..  
T Consensus        73 D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~aGlL~g~~~T~~~~~~~~l~--~~~~~~~~--  148 (208)
T 3ot1_A           73 DALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFVGARMTCHPNFFDHIP--SERLSRQR--  148 (208)
T ss_dssp             SEEEECCCHHHHHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHTTTTTTCSTTCCBCCCGGGGGGSC--TTTBCCSS--
T ss_pred             CEEEECCCchHHHHHhhCHHHHHHHHHHHHcCCEEEEEChhHHHHHHHCCccCCCEEEECccHHHHcc--CCccccCc--
Confidence            999999997 45556789999999999999999999999999 9999999999999999999887652  23444443  


Q ss_pred             ceEEE--cCCeEeCCCCCCHHHHHHHHHHHHccccccc--cceEEEecCCchhhcccc
Q 027785          165 AACVV--DGNIITGATYEGHPEFIRLFLKALGGTITGS--DKRILFLCGVSFCFQNLL  218 (219)
Q Consensus       165 ~~~v~--dg~liT~~g~~s~~~~~l~li~~l~~~~~~~--~~~~~~~~~~~~~~~~~~  218 (219)
                        +++  |||+|||+|+.+++||++++|+++.|+..++  ++.++|-.+....|..++
T Consensus       149 --vv~d~dg~iiTs~g~~a~~d~al~lv~~l~G~~~a~~va~~l~~~~~~~~q~~~~l  204 (208)
T 3ot1_A          149 --VCYYATQHLLTSQGPGTALEFALAMIALLAGVELAQHVAAPMVLHPQQLTELSGFI  204 (208)
T ss_dssp             --EEEEGGGTEEEECSGGGHHHHHHHHHHHHHCHHHHHHHHGGGTCCHHHHHHHHTTT
T ss_pred             --EEEeCCCCEEECCCHHHHHHHHHHHHHHhcCHHHHHHHHHhheeCCCCCCccchhh
Confidence              565  5699999999999999999999998885544  666666444555565554

>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A

Probab=100.00  E-value=9.3e-40  Score=253.55  Aligned_cols=180  Identities=22%  Similarity=0.328  Sum_probs=156.5

Q ss_pred             CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCC-----
Q 027785            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDP-----   83 (219)
Q Consensus         9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~-----   83 (219)
                      +||+|+++|||++.|+..|+++|+++|+++++++....+..             .+.++.|.++.+|..+++++.     
T Consensus         5 ~kV~ill~dGfe~~E~~~p~~vl~~ag~~v~~~s~~~~~~~-------------~v~~~~g~~v~~d~~~~~~~~~d~~~   71 (194)
T 4gdh_A            5 VKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDR-------------LVKMSRDVEMYANRSYKEIPSADDFA   71 (194)
T ss_dssp             CCEEEEEETTCCHHHHHHHHHHHHHTTCCEEEEEESSCTTC-------------EEECTTSCEEECSEEGGGSCCHHHHH
T ss_pred             CEEEEEECCCcCHHHHHHHHHHHHHCCCeEEEEEEcCCCCc-------------eEecCCCceeeccccHhhCCcccccc
Confidence            59999999999999999999999999999999887643211             677888999999999988753     


Q ss_pred             CCccEEEEcCCC-CcccccCChHHHHHHHHHHhc-CCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecC
Q 027785           84 TKYDGLVIPGGR-APEYLAMNDSVIDLVRKFSNS-GKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEP  161 (219)
Q Consensus        84 ~~~D~liipGG~-~~~~~~~~~~l~~~l~~~~~~-~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~  161 (219)
                      .+||+|+||||. ++..++.++.+++||++++++ +|+++++|+|+ +|+.+|+|+||++|+||..++.+++.++.|++.
T Consensus        72 ~~yD~lvvPGG~~~~~~l~~~~~l~~~l~~~~~~~~k~iaaiC~g~-~l~~aglL~gr~~T~~~~~~~~l~~~g~~~~d~  150 (194)
T 4gdh_A           72 KQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMICAGT-LTAKTSGLPNKQITGHPSVRGQLEEGGYKYLDQ  150 (194)
T ss_dssp             HHCSEEEECCCHHHHHHHHTCHHHHHHHHHHTTCTTCEEEEEGGGG-HHHHHTTCCCSEECCCGGGHHHHHHTTCEECCS
T ss_pred             ccCCEEEECCCchhHhHhhhCHHHHHHHHHhhhcCCceEEeecccc-cchhhceecCCceEecCcHHHHHHhcCCeeecc
Confidence            359999999996 466678899999999999875 79999999998 567788899999999999999999999999876


Q ss_pred             CCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHccccccc--cceEEE
Q 027785          162 ETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGS--DKRILF  206 (219)
Q Consensus       162 ~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~~~~~~--~~~~~~  206 (219)
                      .    +|+|||+|||+|+.++++|+++||+++.|+..++  ++.++|
T Consensus       151 ~----vV~Dg~iiTs~g~~~~~d~al~lve~l~G~~~a~~va~~l~~  193 (194)
T 4gdh_A          151 P----VVLEENLITSQGPGTAMLFGLKLLEQVASKDKYNAVYKSLSM  193 (194)
T ss_dssp             S----EEEETTEEEECSGGGHHHHHHHHHHHHSCHHHHHHHHHHTTC
T ss_pred             e----EEEcCCEEECCCHhHHHHHHHHHHHHHcCHHHHHHHHhhccC
Confidence            5    8999999999999999999999999999986544  554443

>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...

Probab=100.00  E-value=1.4e-39  Score=253.22  Aligned_cols=174  Identities=24%  Similarity=0.355  Sum_probs=154.4

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCC-CCCCc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEI-DPTKY   86 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~-~~~~~   86 (219)
                      ++||+|+++|||+..|+..++++|+.+|++++++|++++.               ++.++.|..+.++..++++ ++.+|
T Consensus         3 ~~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~---------------~v~~~~g~~v~~d~~l~~~~~~~~~   67 (197)
T 2rk3_A            3 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKD---------------PVQCSRDVVICPDASLEDAKKEGPY   67 (197)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSS---------------CEECTTSCEECCSEEHHHHHTTCCC
T ss_pred             CCEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCC---------------ccccCCCCEEeCCcCHHHcCCccCC
Confidence            4699999999999999999999999999999999998642               5778889999999999887 66799


Q ss_pred             cEEEEcCCCC-cccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHC-CCeEecCCCc
Q 027785           87 DGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAA-GASWIEPETM  164 (219)
Q Consensus        87 D~liipGG~~-~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~-g~~~~~~~~~  164 (219)
                      |+|+||||.+ +..+..++.+.+||+++++++|+|++||+|+++|+++|+|+||++|+||...+.+++. +..+.+.   
T Consensus        68 D~livpGG~~~~~~l~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~aGll~G~~~T~~~~~~~~l~~~~~~~~~~~---  144 (197)
T 2rk3_A           68 DVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIATICAGPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSEN---  144 (197)
T ss_dssp             SEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHTTCSTTCEECCCGGGHHHHTTTSCSEECCC---
T ss_pred             CEEEECCCchhHHHhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHCCCCCCCEEEeCCcHHHHHhhcCCceeCCC---
Confidence            9999999974 4456778999999999999999999999999999999999999999999999999864 3344333   


Q ss_pred             ceEEEcCCeEeCCCCCCHHHHHHHHHHHHccccccc
Q 027785          165 AACVVDGNIITGATYEGHPEFIRLFLKALGGTITGS  200 (219)
Q Consensus       165 ~~~v~dg~liT~~g~~s~~~~~l~li~~l~~~~~~~  200 (219)
                       .+|+|||+|||+|+.+++||++++|+++.|+..++
T Consensus       145 -~~v~Dg~iiTs~g~~a~~d~al~li~~l~g~~~a~  179 (197)
T 2rk3_A          145 -RVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAA  179 (197)
T ss_dssp             -SEEEETTEEEECSGGGHHHHHHHHHHHHHCHHHHH
T ss_pred             -CEEEeCCEEECCCHHHHHHHHHHHHHHhcCHHHHH
Confidence             39999999999999999999999999998885543

>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2

Probab=100.00  E-value=8.2e-39  Score=248.17  Aligned_cols=168  Identities=33%  Similarity=0.586  Sum_probs=154.2

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCC-ccccccCccCCCCCCc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGH-NFALNATFDEIDPTKY   86 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~i~~~~~~~~~~~~~~   86 (219)
                      ++||+|+++|||+..|+..+.++|+.+|+++.++++++++               .+.++.|. .+.++..++++++.+|
T Consensus        23 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~---------------~v~~~~g~~~v~~~~~l~~~~~~~~   87 (193)
T 1oi4_A           23 SKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGK---------------TVKGKKGEASVTIDKSIDEVTPAEF   87 (193)
T ss_dssp             CCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTC---------------EEECTTSSCEEECCEEGGGCCGGGC
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCc---------------ceecCCCCeEEECCCChHHCCcccC
Confidence            5799999999999999999999999999999999998762               27778888 9999999998877789


Q ss_pred             cEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcce
Q 027785           87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAA  166 (219)
Q Consensus        87 D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~~  166 (219)
                      |+||||||.++..+..++.+.+||+++++++++|++||+|+++|+++|+|+||++|+||...+.|++.+..+++..    
T Consensus        88 D~livpGG~~~~~l~~~~~l~~~l~~~~~~gk~i~aIC~G~~lLa~aGLL~Gr~~Tth~~~~~~l~~~~~~~~~~~----  163 (193)
T 1oi4_A           88 DALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQE----  163 (193)
T ss_dssp             SEEEECCBTHHHHHTTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSS----
T ss_pred             CEEEECCCcCHHHhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHCCccCCCEEEeChhHHHHHHHcCCEEecCC----
Confidence            9999999977655667899999999999999999999999999999999999999999999999998888887765    


Q ss_pred             EEEcCC-eEeCCCCCCHHHHHHHHHHHHc
Q 027785          167 CVVDGN-IITGATYEGHPEFIRLFLKALG  194 (219)
Q Consensus       167 ~v~dg~-liT~~g~~s~~~~~l~li~~l~  194 (219)
                      +|+||| +|||+|+.++.||++++|++|.
T Consensus       164 ~v~Dg~~iiTs~g~~~~~d~~l~li~~l~  192 (193)
T 1oi4_A          164 VVVDKDQLVTSRTPDDLPAFNREALRLLG  192 (193)
T ss_dssp             CEEETTTEEEESSGGGHHHHHHHHHHHHC
T ss_pred             EEEECCEEEECCCcchHHHHHHHHHHHhh
Confidence            688999 9999999999999999999875

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}

Probab=100.00  E-value=3.6e-38  Score=264.23  Aligned_cols=172  Identities=28%  Similarity=0.493  Sum_probs=158.4

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCC-ccccccCccCCCCCCc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGH-NFALNATFDEIDPTKY   86 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~i~~~~~~~~~~~~~~   86 (219)
                      ++||+|+++|||+..|+..|+++|+.+|+++.++|+++++               .+.++.|. .+.+|..++++++.+|
T Consensus        10 mkkV~ILl~dgf~~~El~~p~dvL~~Ag~~v~vvS~~~g~---------------~V~ss~G~~~i~~d~~l~~v~~~~~   74 (365)
T 3fse_A           10 KKKVAILIEQAVEDTEFIIPCNGLKQAGFEVVVLGSRMNE---------------KYKGKRGRLSTQADGTTTEAIASEF   74 (365)
T ss_dssp             -CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSSC---------------CEECTTSCCEECCSEETTTCCGGGC
T ss_pred             ceEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEECCCCc---------------eeecCCCceEEeCCCCHhhCCCcCC
Confidence            5799999999999999999999999999999999998762               37888899 9999999999877789


Q ss_pred             cEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcce
Q 027785           87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAA  166 (219)
Q Consensus        87 D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~~  166 (219)
                      |+||||||.++..+..++.+.+||+++++++++|++||+|+++|+++|||+||++|+||...+.|++.++.+.+..    
T Consensus        75 DaLiVPGG~g~~~l~~~~~l~~~Lr~~~~~gk~IaAIC~G~~lLA~AGLLdGrraTthw~~~~~L~~~g~~~~d~~----  150 (365)
T 3fse_A           75 DAVVIPGGMAPDKMRRNPNTVRFVQEAMEQGKLVAAVCHGPQVLIEGDLLRGKQATGFIAISKDMMNAGADYLDEA----  150 (365)
T ss_dssp             SEEEECCBTHHHHHTTCHHHHHHHHHHHHTTCEEEEETTTHHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCSS----
T ss_pred             CEEEEECCcchhhccCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCcCCCEEEeChHHHHHHHhCCCEEecCc----
Confidence            9999999998766678999999999999999999999999999999999999999999999999998777886543    


Q ss_pred             EEEcCCeEeCCCCCCHHHHHHHHHHHHccccc
Q 027785          167 CVVDGNIITGATYEGHPEFIRLFLKALGGTIT  198 (219)
Q Consensus       167 ~v~dg~liT~~g~~s~~~~~l~li~~l~~~~~  198 (219)
                      +|+|||+|||+|+.++.+|++++|+++.+...
T Consensus       151 vV~DGniITs~G~~a~~d~al~lIe~L~g~~~  182 (365)
T 3fse_A          151 LVVDGNLITSREPGDLAIFTTAILSRLGYGGK  182 (365)
T ss_dssp             CEEETTEEEECSGGGHHHHHHHHHHHTTCCCS
T ss_pred             EEEECCEEECCCHHHHHHHHHHHHHHhcCchH
Confidence            88999999999999999999999999999854

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}

Probab=100.00  E-value=1.3e-37  Score=265.92  Aligned_cols=201  Identities=75%  Similarity=1.285  Sum_probs=173.7

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      +|||+|+++|||++.|+..++++|+++|++++++|++++|.++...+.++..+...+.++.|..+.++.+++++++.+||
T Consensus        12 ~~kv~ill~dg~e~~E~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   91 (396)
T 3uk7_A           12 SRTVLILCGDYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDLSKYD   91 (396)
T ss_dssp             CCEEEEECCTTEEHHHHHHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGGCCGGGCS
T ss_pred             CCeEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhhcCcccCC
Confidence            57999999999999999999999999999999999987665543333333333345677889999999999998878999


Q ss_pred             EEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcceE
Q 027785           88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAAC  167 (219)
Q Consensus        88 ~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~~~  167 (219)
                      +|+||||.++..+..++.+.+||+++++++++|+++|+|+++|+++|||+||++|+||...+.+++.|+.|++.+.+..+
T Consensus        92 ~livpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~La~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~  171 (396)
T 3uk7_A           92 GLVIPGGRAPEYLALTASVVELVKEFSRSGKPIASICHGQLILAAADTVNGRKCTAYATVGPSLVAAGAKWVEPITPDVC  171 (396)
T ss_dssp             EEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCCSSTTCE
T ss_pred             EEEECCCcchhhcccCHHHHHHHHHHHHcCCEEEEECchHHHHHhccccCCCEeecCcchHHHHHHCCCEEECCCCCcce
Confidence            99999998776677899999999999999999999999999999999999999999999999999888899887654458


Q ss_pred             EEcCCeEeCCCCCCHHHHHHHHHHHHccccccccceEEEec
Q 027785          168 VVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRILFLC  208 (219)
Q Consensus       168 v~dg~liT~~g~~s~~~~~l~li~~l~~~~~~~~~~~~~~~  208 (219)
                      |+|||+|||+|+.++.+|++++|+++.++.......+..+.
T Consensus       172 v~Dg~iiT~~g~~~~~d~al~li~~l~g~~~~~~~ki~ill  212 (396)
T 3uk7_A          172 VVDGSLITAATYEGHPEFIQLFVKALGGKITGANKRILFLC  212 (396)
T ss_dssp             EEETTEEEESSGGGHHHHHHHHHHHTTCEEECCCCEEEEEC
T ss_pred             EecCCEEEecCcccHHHHHHHHHHHHhccchhccceEEEEe
Confidence            99999999999999999999999999998764444444444

>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}

Probab=100.00  E-value=5.4e-38  Score=245.60  Aligned_cols=172  Identities=21%  Similarity=0.234  Sum_probs=147.7

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhC-CCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAF-GVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKY   86 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~a-g~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~   86 (219)
                      ++||+|+++|||++.|+..+.++|+++ +++++++|+++                 .+.++.|..+.+|.+++++ +.+|
T Consensus         3 m~kV~ill~~g~~~~E~~~~~~~l~~~~~~~v~~vs~~~-----------------~V~~~~G~~v~~d~~l~~~-~~~~   64 (206)
T 3f5d_A            3 LKKALFLILDQYADWEGVYLASALNQREDWSVHTVSLDP-----------------IVSSIGGFKTSVDYIIGLE-PANF   64 (206)
T ss_dssp             CEEEEEECCSSBCTTTSHHHHHHHHTSTTEEEEEEESSS-----------------EEEBTTSCEEECSEETTSS-CSCC
T ss_pred             ccEEEEEEcCCCcHHHHHHHHHHHhccCCeEEEEEECCC-----------------CEEecCCcEEecCcChhhC-CcCC
Confidence            469999999999999999999999998 99999999985                 2567789999999999987 4689


Q ss_pred             cEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHH----C-CCeEecC
Q 027785           87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA----A-GASWIEP  161 (219)
Q Consensus        87 D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~----~-g~~~~~~  161 (219)
                      |+|+||||.++..  .++.+++||+++++++++|++||+|+++|+++|||+||++|+||.  +.+++    . ++.+.+.
T Consensus        65 D~livpGG~~~~~--~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~aGLL~Gr~aTthw~--~~~~~~~~~~~~~~~~~~  140 (206)
T 3f5d_A           65 NLLVMIGGDSWSN--DNKKLLHFVKTAFQKNIPIAAICGAVDFLAKNGLLNNHSHTGNFV--YLWKDYKQYKPISSFVEK  140 (206)
T ss_dssp             SEEEECCBSCCCC--CCHHHHHHHHHHHHTTCCEEEETHHHHHHHHTTTTTTSCBCCSCG--GGGTTCTTCCCSSCBCCS
T ss_pred             CEEEEcCCCChhh--cCHHHHHHHHHHHHcCCEEEEECHHHHHHHHcCCCCCCEEEccCH--HHhhhhHhhcCCCeEccC
Confidence            9999999987754  789999999999999999999999999999999999999999993  23332    2 3555543


Q ss_pred             CCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHccccccc-cceEEE
Q 027785          162 ETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGS-DKRILF  206 (219)
Q Consensus       162 ~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~~~~~~-~~~~~~  206 (219)
                          .+|+|||+|||+|+. ++||++++|+.++.+.+.+ ++.++|
T Consensus       141 ----~~V~Dg~iiTs~G~a-~id~al~li~~l~~~~a~~va~~~~~  181 (206)
T 3f5d_A          141 ----QAVRDKNLVTANGTA-PIEFTNLILEMIDFDTPENIEKMMYM  181 (206)
T ss_dssp             ----SEEEETTEEEECTTC-HHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             ----CEEEECCEEECCCch-HHHHHHHHHHHhCcchHHHHHHHhhh
Confidence                399999999999985 9999999999998776666 444444

>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2

Probab=100.00  E-value=1.4e-38  Score=249.05  Aligned_cols=191  Identities=21%  Similarity=0.381  Sum_probs=158.9

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      ++||+|+++|||+..|+..++++|+.+|++++++|++++..             .++.++.|..+.++..++++++.+||
T Consensus         2 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~-------------~~v~~~~g~~v~~~~~l~~~~~~~~D   68 (205)
T 2ab0_A            2 SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGN-------------LAITCSRGVKLLADAPLVEVADGEYD   68 (205)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTC-------------CEEECTTSCEEECSEEHHHHTTSCCS
T ss_pred             CcEEEEEEcCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCCC-------------ceeecCCCeEEecCCCHHHCCcccCC
Confidence            46999999999999999999999999999999999986410             04677889999999999888777899


Q ss_pred             EEEEcCCCC-cccccCChHHHHHHHHHHhcCCeEEEEehhH-HHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcc
Q 027785           88 GLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQ-LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMA  165 (219)
Q Consensus        88 ~liipGG~~-~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~-~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~  165 (219)
                      +||||||.+ +..+..++.+.+||+++++++|+|++||+|+ ++|+++|||+||++|+||..++.+.  +..+.+.    
T Consensus        69 ~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~aGlL~G~~~T~~~~~~~~~~--~~~~~~~----  142 (205)
T 2ab0_A           69 VIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIP--AEQWLDK----  142 (205)
T ss_dssp             EEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTTTSSSSSCBCCCGGGGGGSC--TTTBCCC----
T ss_pred             EEEECCCcccHHHhccCHHHHHHHHHHHHcCCEEEEECHhHHHHHHHCCccCCCeEEeCccHHHHcc--CCEEecC----
Confidence            999999974 5556678999999999999999999999999 9999999999999999998665442  2344443    


Q ss_pred             eEEEcCCe--EeCCCCCCHHHHHHHHHHHHccccccc--cceEEEecCCchhhccc
Q 027785          166 ACVVDGNI--ITGATYEGHPEFIRLFLKALGGTITGS--DKRILFLCGVSFCFQNL  217 (219)
Q Consensus       166 ~~v~dg~l--iT~~g~~s~~~~~l~li~~l~~~~~~~--~~~~~~~~~~~~~~~~~  217 (219)
                      .+|+|||+  |||+|+.++.+|++++|+++.|...++  ++.++|....+..++||
T Consensus       143 ~vv~Dg~i~viTs~g~~s~~d~al~li~~l~g~~~a~~va~~l~~~~~r~~~~~~~  198 (205)
T 2ab0_A          143 RVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVASQLVMAAGIYNYYEQL  198 (205)
T ss_dssp             SEEEETTTTEEEECSGGGHHHHHHHHHHHHTCHHHHHHHHTTTTCCTTSCCCCC--
T ss_pred             CEEEeCCcCeEECcChhhHHHHHHHHHHHhcChHHHHHHHHhcccCCCCCchHHHH
Confidence            28889999  999999999999999999999886544  66666655544444443

>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}

Probab=100.00  E-value=7.7e-38  Score=249.15  Aligned_cols=177  Identities=19%  Similarity=0.237  Sum_probs=154.4

Q ss_pred             CCCEEEEEecCCCCchhhHHHHHHHHhCC--CeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCC
Q 027785            7 GKRSVLLLCGDYMEDYEAMVPFQALLAFG--VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT   84 (219)
Q Consensus         7 ~~~kv~il~~~g~~~~e~~~~~~~l~~ag--~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~   84 (219)
                      .++||+|+++|||++.|+..++++|+.++  |+++++| +++                ++.++.|..+.+|..+++  ..
T Consensus        19 ~~~kV~ill~dGf~~~e~~~p~dvl~~~~~~~~v~~vs-~~~----------------~V~ss~G~~v~~d~~l~~--~~   79 (236)
T 3bhn_A           19 GMYKVGIVLFDDFTDVDFFLMNDLLGRTSDSWTVRILG-TKP----------------EHHSQLGMTVKTDGHVSE--VK   79 (236)
T ss_dssp             -CEEEEEECCTTBCHHHHHHHHHHHTTCSSSEEEEEEE-SSS----------------EEEBTTCCEEECSEEGGG--GG
T ss_pred             CCCEEEEEeCCCChHHHHHHHHHHHHcCCCCEEEEEEE-CCC----------------cEEecCCcEEecCccccc--cc
Confidence            36799999999999999999999999976  8999999 665                678888999999998887  36


Q ss_pred             CccEEEEcCC-CCcccccCChHHHHHHHHHHhcCC-eEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCC
Q 027785           85 KYDGLVIPGG-RAPEYLAMNDSVIDLVRKFSNSGK-TIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPE  162 (219)
Q Consensus        85 ~~D~liipGG-~~~~~~~~~~~l~~~l~~~~~~~~-~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~  162 (219)
                      +||+|||||| .++..+..++.+++||  ++++++ +|++||+|+++|+++|||+||++|+||...+.|++.+..+.+. 
T Consensus        80 ~~D~liVPGG~~g~~~l~~~~~l~~~L--~~~~~~~~IaaIC~G~~lLa~AGLL~Gr~aTth~~~~~~l~~~~p~~~~~-  156 (236)
T 3bhn_A           80 EQDVVLITSGYRGIPAALQDENFMSAL--KLDPSRQLIGSICAGSFVLHELGLLKGKKLTTNPDAKAVLQGMGGDVQDL-  156 (236)
T ss_dssp             GCSEEEECCCTTHHHHHHTCHHHHHHC--CCCTTTCEEEEETTHHHHHHHTTTTTTCEECCCGGGHHHHHHTTCEECSS-
T ss_pred             CCCEEEEcCCccCHhhhccCHHHHHHH--HhCCCCCEEEEEcHHHHHHHHcCCCCCCEEECCHHHHHHHHHhCCccCCC-
Confidence            8999999999 6765567899999999  677777 9999999999999999999999999999999999876677443 


Q ss_pred             CcceEEEcCCeEeCCCCCCHHHHHHHHHHHHccccccc--cceEEEec
Q 027785          163 TMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGS--DKRILFLC  208 (219)
Q Consensus       163 ~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~~~~~~--~~~~~~~~  208 (219)
                         .+|+|||+|||+|+.+++||++++|+++.|+..++  ++.++|-.
T Consensus       157 ---~vV~Dg~iiTs~G~~a~~dlal~lIe~l~G~~~A~~va~~l~~~~  201 (236)
T 3bhn_A          157 ---PLVIEGNIATAGGCLSLLYLVGWLAERLFDSVKRKQIQNQLIPAG  201 (236)
T ss_dssp             ---SEEEETTEEEECSGGGHHHHHHHHHHHHSCHHHHHHHHTTTSCTT
T ss_pred             ---cEEEeCCEEECCCHHHHHHHHHHHHHHhcCHHHHHHHHHhcccCC
Confidence               39999999999999999999999999999986544  55555543

>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2

Probab=100.00  E-value=6.1e-37  Score=236.70  Aligned_cols=170  Identities=22%  Similarity=0.328  Sum_probs=148.6

Q ss_pred             CEEEEEecCCCCchhhHHHHHHHHh-CCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785            9 RSVLLLCGDYMEDYEAMVPFQALLA-FGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus         9 ~kv~il~~~g~~~~e~~~~~~~l~~-ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      +||+|+++|||++.|+..+.++|+. ++++++++|++++                ++.++.|..+.++..++++++.+||
T Consensus         2 ~~i~ill~~g~~~~e~~~~~~~l~~a~~~~v~~vs~~~~----------------~v~~~~g~~v~~~~~~~~~~~~~~D   65 (188)
T 2fex_A            2 TRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGM----------------PVTSMGGLKVTPDTSYDALDPVDID   65 (188)
T ss_dssp             CEEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSS----------------CEECTTCCEEECSEEGGGCCTTTCS
T ss_pred             cEEEEEeCCCchHHHHHHHHHHHhhcCCceEEEEeCCCC----------------ceeeCCCcEEeccccHHHCCcccCC
Confidence            5999999999999999999999999 9999999999876                5778889999999999988777899


Q ss_pred             EEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHH-CCC--eEecCCCc
Q 027785           88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-AGA--SWIEPETM  164 (219)
Q Consensus        88 ~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~-~g~--~~~~~~~~  164 (219)
                      +|+||||.+.. ...++.+++||+++++++++|++||+|+++|+++|||+||++|+||.....+++ ++.  .+.+..+ 
T Consensus        66 ~livpGG~~~~-~~~~~~l~~~l~~~~~~~k~i~aiC~G~~~La~aGlL~gr~~T~~~~~~~~~~~~~~~~~~~~~~~~-  143 (188)
T 2fex_A           66 ALVIPGGLSWE-KGTAADLGGLVKRFRDRDRLVAGICAAASALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQPR-  143 (188)
T ss_dssp             EEEECCBSHHH-HTCCCCCHHHHHHHHHTTCEEEEETHHHHHHHHTTTTTTSCBCCSCHHHHHTSTTCCCGGGBCCCSS-
T ss_pred             EEEECCCCccc-ccccHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCcCCccccCCcHHHHhhhhhcCCccceecCCC-
Confidence            99999998654 356889999999999999999999999999999999999999999976555544 453  3444331 


Q ss_pred             ceEEEcCCeEeCCCCCCHHHHHHHHHHHHcccccc
Q 027785          165 AACVVDGNIITGATYEGHPEFIRLFLKALGGTITG  199 (219)
Q Consensus       165 ~~~v~dg~liT~~g~~s~~~~~l~li~~l~~~~~~  199 (219)
                        +|+|||+|||+|+. ++||++++|+++.+...+
T Consensus       144 --~v~Dg~iiTs~g~~-~~d~al~lv~~l~~~~~~  175 (188)
T 2fex_A          144 --AVSDGGVVTAAGSA-PVSFAVEILKSLGLFGPE  175 (188)
T ss_dssp             --CEEETTEEEECTTC-HHHHHHHHHHHTTCCSHH
T ss_pred             --EEEECCEEECCCcc-HHHHHHHHHHHccCCCHH
Confidence              89999999999985 899999999999887543

>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2

Probab=100.00  E-value=2.1e-36  Score=239.68  Aligned_cols=181  Identities=23%  Similarity=0.371  Sum_probs=149.8

Q ss_pred             CCEEEEEec----------CCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccC-----Ccc
Q 027785            8 KRSVLLLCG----------DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRG-----HNF   72 (219)
Q Consensus         8 ~~kv~il~~----------~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~i   72 (219)
                      ++||+|+++          +||+..|+..|+++|+.+|++++++|+++++......++.+        ...+     ..+
T Consensus         5 ~~kv~ill~~~~~~~~~~~~G~~~~e~~~p~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~--------~~~~~~~~~~~i   76 (224)
T 1u9c_A            5 SKRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGGEVPLDPRSINE--------KDPSWAEAEAAL   76 (224)
T ss_dssp             CCEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSCBCCCBCGGGSSS--------CCGGGHHHHHHT
T ss_pred             CceEEEEECCcccccCCCCCceeHHHHHHHHHHHHHCCCeEEEECCCCCccccCcccccc--------HHHHHhhhhHhh
Confidence            379999999          99999999999999999999999999987642100000000        0013     567


Q ss_pred             ccccCccCCCCCCccEEEEcCCCCcc-cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCc------ccCCceEeeCC
Q 027785           73 ALNATFDEIDPTKYDGLVIPGGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD------VVKGRKCTAYP  145 (219)
Q Consensus        73 ~~~~~~~~~~~~~~D~liipGG~~~~-~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aG------lL~g~~~t~~~  145 (219)
                      .++..++++++.+||+||||||.++. .+..++.+.+||+++++++|+|++||+|+++|+++|      ||+||++|+||
T Consensus        77 ~~~~~l~~~~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaiC~G~~~La~ag~~~g~~lL~Gr~~T~~~  156 (224)
T 1u9c_A           77 KHTARLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNATYKDGTPIVKGKTVTSFT  156 (224)
T ss_dssp             TSBEECCGGGGSSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTSCBTTTTCEECCSC
T ss_pred             cCCCChHHcChhhCCEEEECCCcchHHHhhcCHHHHHHHHHHHHCCCEEEEEChHHHHHHHccccCCCceecCcEEecCC
Confidence            88888988777789999999998864 467899999999999999999999999999999999      99999999999


Q ss_pred             CCHH---------------HHHHCCCeEecCCCc-ceEEEcCCeEeCCCCCCHHHHHHHHHHHHccc
Q 027785          146 PVKP---------------VLIAAGASWIEPETM-AACVVDGNIITGATYEGHPEFIRLFLKALGGT  196 (219)
Q Consensus       146 ~~~~---------------~l~~~g~~~~~~~~~-~~~v~dg~liT~~g~~s~~~~~l~li~~l~~~  196 (219)
                      ...+               .|++.++.+++.+.+ ..+|+|||+|||+|+.++++|++++|+++.++
T Consensus       157 ~~~~~~~~~~~~~p~~~~~~l~~~g~~~~~~~~~~~~vv~Dg~liTs~g~~s~~d~al~lv~~l~g~  223 (224)
T 1u9c_A          157 DEEEREVGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLITGQNPQSSRSTAEKVVAALEER  223 (224)
T ss_dssp             HHHHHHHTCGGGSSSCHHHHHHHTTCEECCCSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHTT
T ss_pred             CHHHhhccccccCCccHHHHHHHcCCEEecCCCCCccEEEeCCEEECCChhhHHHHHHHHHHHHhcc
Confidence            7655               466678888766411 24899999999999999999999999998875

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}

Probab=100.00  E-value=4.1e-36  Score=256.68  Aligned_cols=190  Identities=57%  Similarity=1.083  Sum_probs=165.7

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      ++||+|+++|||++.|+..++++|+++|++++++++++++......++....+.+.+.++.|..+.++..++++++.+||
T Consensus       205 ~~ki~ill~dg~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D  284 (396)
T 3uk7_A          205 NKRILFLCGDYMEDYEVKVPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDLVSSSYD  284 (396)
T ss_dssp             CCEEEEECCTTEEHHHHHHHHHHHHHHTCEEEEECTTCCTTCEECEEEEECCSSSSCEEEECCCEECCSCGGGCCGGGCS
T ss_pred             cceEEEEecCCCcchhHHHHHHHHHHCCCEEEEECCCCCCCcccccccccccccchhhhcCCceeeccCCHHHCCcccCC
Confidence            57999999999999999999999999999999999998754333333333333445677889999999999998878999


Q ss_pred             EEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcceE
Q 027785           88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAAC  167 (219)
Q Consensus        88 ~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~~~  167 (219)
                      +|+||||.++..+..++.+.+||+++++++++|++||+|+++|+++|||+||++|+||...+.++..++.|++.+....+
T Consensus       285 ~livpGg~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~g~~~La~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~~~  364 (396)
T 3uk7_A          285 ALVIPGGRAPEYLALNEHVLNIVKEFMNSEKPVASICHGQQILAAAGVLKGRKCTAYPAVKLNVVLGGGTWLEPDPIDRC  364 (396)
T ss_dssp             EEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEEGGGHHHHHHTTTTTTCEECCCGGGHHHHHHTTCEECCCSSTTCE
T ss_pred             EEEECCCcchhhhccCHHHHHHHHHHHHCCCEEEEEchHHHHHHHcCCcCCCEEecCccHHHHHHHCCCEEEcCCCceeE
Confidence            99999998766667899999999999999999999999999999999999999999999999998888888876521128


Q ss_pred             EEcCCeEeCCCCCCHHHHHHHHHHHHcccc
Q 027785          168 VVDGNIITGATYEGHPEFIRLFLKALGGTI  197 (219)
Q Consensus       168 v~dg~liT~~g~~s~~~~~l~li~~l~~~~  197 (219)
                      |+|||+|||+|+.++.||++++|+++.++.
T Consensus       365 v~Dg~iiTs~g~~~~~d~~l~li~~l~~~~  394 (396)
T 3uk7_A          365 FTDGNLVTGAAWPGHPEFVSQLMALLGIQV  394 (396)
T ss_dssp             EEETTEEEESSGGGHHHHHHHHHHHHTCEE
T ss_pred             EEcCCEEECCCchhHHHHHHHHHHHhcccc
Confidence            999999999999999999999999998863

>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*

Probab=100.00  E-value=2.9e-35  Score=235.35  Aligned_cols=190  Identities=19%  Similarity=0.270  Sum_probs=148.8

Q ss_pred             CCEEEEEec------------CCCCchhhHHHHHHHHhCCCeEEEecCCCCCC-CCCCcc--cccCCCcceec---cccC
Q 027785            8 KRSVLLLCG------------DYMEDYEAMVPFQALLAFGVSVDAACPGKKSG-DVCPTA--VHQSTGHQTYS---ETRG   69 (219)
Q Consensus         8 ~~kv~il~~------------~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~-~~~~~~--~~~~~~~~~~~---~~~g   69 (219)
                      ++||+|++.            +||+..|+..|+++|+++|++|+++|+++++. ++.+..  ......++.+.   .+.+
T Consensus         3 m~kvlivlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~iaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~   82 (244)
T 3kkl_A            3 PKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETGGFGWDEHYLPKSFIGGEDKMNFETKNSAFN   82 (244)
T ss_dssp             CCEEEEECCCCCCCCSTTSCCCCBCHHHHHHHHHHHHTTTCEEEEEESSSCCCBCTTC--------------------CH
T ss_pred             CCEEEEEECCCCcccCCCCCcCcccHHHHHHHHHHHHHCCCEEEEEeCCCCCCcCCccccccccCHHHHHHHHHhhHHHH
Confidence            469999997            38888999999999999999999999987641 111100  00001111222   2345


Q ss_pred             CccccccCccCCCCCCccEEEEcCCCCc-ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC-------cccCCceE
Q 027785           70 HNFALNATFDEIDPTKYDGLVIPGGRAP-EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA-------DVVKGRKC  141 (219)
Q Consensus        70 ~~i~~~~~~~~~~~~~~D~liipGG~~~-~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a-------GlL~g~~~  141 (219)
                      ..+.++.+++++++.+||+||||||.++ ..++.++.+.+||+++++++|+|++||+|+++|+++       |||+||++
T Consensus        83 ~~l~~~~~l~~v~~~~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~G~~~La~a~~~~~g~gll~G~~~  162 (244)
T 3kkl_A           83 KALARIKTANEVNASDYKVFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGLIDIKTTRPLIEGKAI  162 (244)
T ss_dssp             HHHHTCEEGGGCCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTTSSBTTTTCEE
T ss_pred             HHhcCCCChHHCCHhhCCEEEEcCCCchhhhcccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhhccccCCceeCCcee
Confidence            6788899999998889999999999986 457889999999999999999999999999999999       99999999


Q ss_pred             eeCCCCHH-------------------HHHHCCCeEecC--CCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHcccc
Q 027785          142 TAYPPVKP-------------------VLIAAGASWIEP--ETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTI  197 (219)
Q Consensus       142 t~~~~~~~-------------------~l~~~g~~~~~~--~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~~~  197 (219)
                      |+||..++                   .+++.|+.|++.  +.+..+|+|||+||++|+.++.+|++++|+.+..-.
T Consensus       163 T~~~~~ee~~~~~~~~~p~~~~~~l~~~l~~~Ga~~~~~~~~~~~~vV~Dg~lITg~gp~sa~~~a~~lv~~l~~~~  239 (244)
T 3kkl_A          163 TGFPLEGEIALGVDDILRSRKLTTVERVANKNGAKYLAPIHPWDDYSITDGKLVTGVNANSSYSTTIRAINALYSVE  239 (244)
T ss_dssp             CCSCHHHHHHHTTHHHHHHTTCCCHHHHHHTTTCEECCCSSTTSCCEEEETTEEEESSGGGHHHHHHHHHHHHTC--
T ss_pred             cCCCcHHHHhhhhhhhccccccccHHHHHHHCCCEEecCCCCCCCCEEEeCCEEECCChHHHHHHHHHHHHHHhhhh
Confidence            99998643                   455568999874  112359999999999999999999999999987653

>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}

Probab=100.00  E-value=1.1e-35  Score=227.16  Aligned_cols=159  Identities=19%  Similarity=0.345  Sum_probs=139.7

Q ss_pred             CCEEEEEecC---C---CCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCC
Q 027785            8 KRSVLLLCGD---Y---MEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEI   81 (219)
Q Consensus         8 ~~kv~il~~~---g---~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~   81 (219)
                      ++||+|+++|   |   |++.|+..      ++++++++++++++.               ++.++.|..+.++..++++
T Consensus         2 ~~~v~ill~~~~~g~~~~~~~e~~~------~~~~~v~~vs~~~~~---------------~v~~~~g~~v~~d~~~~~~   60 (175)
T 3cne_A            2 AKKVAVLAVNPVNGCGLFQYLEAFF------ENGISYKVFAVSDTK---------------EIKTNSGMVLIVDDVIANL   60 (175)
T ss_dssp             CCEEEEEECSSBCHHHHHHHHHHHH------HTTCEEEEEESSSSS---------------EEEBTTSCEEECSEEGGGG
T ss_pred             CcEEEEEEecCcCCCccchhhheee------eCCCEEEEEECCCCC---------------ceecCCCeEEEeccCHHHh
Confidence            4799999999   8   77766665      789999999998521               6788889999999999887


Q ss_pred             --CCCCccEEEEcCC--C-Cccccc---CChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHH
Q 027785           82 --DPTKYDGLVIPGG--R-APEYLA---MNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA  153 (219)
Q Consensus        82 --~~~~~D~liipGG--~-~~~~~~---~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~  153 (219)
                        ++.+||+|+||||  . ++..+.   .++.+.+||+++++++++|++||+|+++|+++|||+||++|+||...+.+++
T Consensus        61 ~~~~~~~D~livpGG~~~~~~~~l~~~~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~aGlL~G~~~T~~~~~~~~l~~  140 (175)
T 3cne_A           61 KGHEDEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGAMMFDFTGITKGKKVAVHPLAKPAIQN  140 (175)
T ss_dssp             TTCGGGCSEEEEECCTTGGGGGGCTTCHHHHHHHHHHHHHHHTTCEEEEETTHHHHHHHTTTTTTCEEECCGGGGGGCCS
T ss_pred             ccCcccCCEEEECCCcCcccHHHHhhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCcCCCEEEeCccHHHHhhc
Confidence              6678999999999  6 665555   6789999999999999999999999999999999999999999998887765


Q ss_pred             CCCeEecCCCcceEEEcCCeEeCCCCCCHHHHHHHHHHHH
Q 027785          154 AGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKAL  193 (219)
Q Consensus       154 ~g~~~~~~~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l  193 (219)
                        ..+.+..    +|+|||+|||+|+.+++||++++|+++
T Consensus       141 --~~~~~~~----~v~Dg~iiTs~g~~~~~d~al~li~~l  174 (175)
T 3cne_A          141 --GIATDEK----SEIDGNFFTAQDENTIWTMLPKVIEAL  174 (175)
T ss_dssp             --SEEESSS----EEEETTEEEESSGGGGGGTHHHHHHHH
T ss_pred             --CEEeCCC----EEEeCCEEeCCChHHHHHHHHHHHHHh
Confidence              5666543    999999999999999999999999987

>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A

Probab=100.00  E-value=4.3e-35  Score=234.89  Aligned_cols=187  Identities=20%  Similarity=0.293  Sum_probs=146.8

Q ss_pred             CEEEEEec------------CCCCchhhHHHHHHHHhCCCeEEEecCCCCCC-CCCCccc--ccCCCccee---ccccCC
Q 027785            9 RSVLLLCG------------DYMEDYEAMVPFQALLAFGVSVDAACPGKKSG-DVCPTAV--HQSTGHQTY---SETRGH   70 (219)
Q Consensus         9 ~kv~il~~------------~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~-~~~~~~~--~~~~~~~~~---~~~~g~   70 (219)
                      +||+|++.            +|++..|+..|+++|+++|++++++|+++++. ++.+...  .+...++.+   ..+.|.
T Consensus         4 ~kvLivls~~~~~~~~~~~~~G~~~~E~~~p~~vl~~ag~~v~~~s~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~g~   83 (243)
T 1rw7_A            4 KKVLLALTSYNDVFYSDGAKTGVFVVEALHPFNTFRKEGFEVDFVSETGKFGWDEHSLAKDFLNGQDETDFKNKDSDFNK   83 (243)
T ss_dssp             CEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEECSSSCCCBCGGGGSTTTSCHHHHHHHHCTTSHHHH
T ss_pred             ceEEEEECCCCcccCCCCCCCccCHHHHHHHHHHHHHCCCEEEEECCCCCCCcCcccccccccChHHHHHHHhhhHHHHh
Confidence            59999996            68899999999999999999999999987631 1100000  000000000   112356


Q ss_pred             ccccccCccCCCCCCccEEEEcCCCCc-ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCc-------ccCCceEe
Q 027785           71 NFALNATFDEIDPTKYDGLVIPGGRAP-EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD-------VVKGRKCT  142 (219)
Q Consensus        71 ~i~~~~~~~~~~~~~~D~liipGG~~~-~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aG-------lL~g~~~t  142 (219)
                      .+.++..++++++.+||+||||||.++ ..+..++.+.+||+++++++++|++||+|+++|+++|       ||+||++|
T Consensus        84 ~l~~~~~l~~v~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~ag~~~~g~~lL~G~~~T  163 (243)
T 1rw7_A           84 TLAKIKTPKEVNADDYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAIFDGLTDKKTGRPLIEGKSIT  163 (243)
T ss_dssp             HHHTCBCGGGCCGGGEEEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTTSSBTTTTCEEC
T ss_pred             hhccCCChHHCCHhhCcEEEECCCCCchhhcccCHHHHHHHHHHHHcCCEEEEECCCHHHHHhcCcccCCceeeCCcEEe
Confidence            788888999887789999999999885 3467899999999999999999999999999999999       99999999


Q ss_pred             eCCCCHHH-------------------HHHCCCeEecC--CCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHcc
Q 027785          143 AYPPVKPV-------------------LIAAGASWIEP--ETMAACVVDGNIITGATYEGHPEFIRLFLKALGG  195 (219)
Q Consensus       143 ~~~~~~~~-------------------l~~~g~~~~~~--~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~  195 (219)
                      +||..++.                   +++.|+.+...  +.+..+|+|||+|||+|+.++++|++++|+++..
T Consensus       164 ~~~~~~e~~~~~~~~~p~~~~~~l~~~l~~~g~~~~~~~~~~~~~vV~Dg~liT~~g~~s~~d~al~lv~~l~~  237 (243)
T 1rw7_A          164 GFTDVGETILGVDSILKAKNLATVEDVAKKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAHSTAVRSIDALKN  237 (243)
T ss_dssp             CSCHHHHHHTTCHHHHHHTTCCCHHHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHCCC-
T ss_pred             ecCCHHHhhccccccccccccccHHHHHHHcCCEEEcCCCCCCCCEEEeCCEEECCChhHHHHHHHHHHHHHhh
Confidence            99986554                   55568888742  1122599999999999999999999999998754

>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0

Probab=100.00  E-value=1.7e-34  Score=231.03  Aligned_cols=189  Identities=22%  Similarity=0.328  Sum_probs=149.2

Q ss_pred             CCEEEEEecC------------CCCchhhHHHHHHHHhCCCeEEEecCCCCCC-CCCCccc--ccCCCcceecc---ccC
Q 027785            8 KRSVLLLCGD------------YMEDYEAMVPFQALLAFGVSVDAACPGKKSG-DVCPTAV--HQSTGHQTYSE---TRG   69 (219)
Q Consensus         8 ~~kv~il~~~------------g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~-~~~~~~~--~~~~~~~~~~~---~~g   69 (219)
                      ++||+|++.+            ||+..|+..|+++|+++|++|+++|+++++. ++.....  .+...++.+..   ..+
T Consensus         9 mkkvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~~aSp~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~   88 (247)
T 3n7t_A            9 PRKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTAAGFEVDVASETGTFGWDEHSLTQEYLSKEDEKVLHSEHNHFM   88 (247)
T ss_dssp             CSEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEEESSSCCCBCSGGGSGGGCCHHHHHHHTCSSCHHH
T ss_pred             CCeEEEEECCCCcccCCCCCCCcccHHHHHHHHHHHHHCCCEEEEEeCCCCcccCcccccccccCHHHHHHHHhhhHHHH
Confidence            4799999976            8889999999999999999999999987531 1110000  00000011111   123


Q ss_pred             Ccccc-ccCccCCCCCCccEEEEcCCCCc-ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC------cccCCceE
Q 027785           70 HNFAL-NATFDEIDPTKYDGLVIPGGRAP-EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA------DVVKGRKC  141 (219)
Q Consensus        70 ~~i~~-~~~~~~~~~~~~D~liipGG~~~-~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a------GlL~g~~~  141 (219)
                      ..+.+ +..++++++.+||+||||||.++ ..++.++.+.+||+++++++|+|++||+|+++|+++      |||+||++
T Consensus        89 ~~l~~~~~~l~~v~~~~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~~La~a~~~~g~gll~G~~~  168 (247)
T 3n7t_A           89 EKMNKQVFKAGDLAPHDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGIHDENGDSVIKDKTV  168 (247)
T ss_dssp             HHHHHCCEEGGGSCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGCBCTTSSBTTTTCEE
T ss_pred             HHHhccCCCHHHCChhhCCEEEEeCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHhhcccCCccccCcee
Confidence            34666 78899998889999999999987 457889999999999999999999999999999999      99999999


Q ss_pred             eeCCCCHH-------------------HHHHCCCeEecC--CCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHccc
Q 027785          142 TAYPPVKP-------------------VLIAAGASWIEP--ETMAACVVDGNIITGATYEGHPEFIRLFLKALGGT  196 (219)
Q Consensus       142 t~~~~~~~-------------------~l~~~g~~~~~~--~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~~  196 (219)
                      |+||..++                   .+++.|+.|++.  +.+..+|+|||+||++|+.++.+|++++|+.|...
T Consensus       169 T~~~~~ee~~~~~~~~~p~~~~~~l~~~l~~~Ga~~~~~~~~~~~~vV~Dg~lITg~~p~sa~~~a~~lv~~L~~~  244 (247)
T 3n7t_A          169 TGFTTKGEIMIKVIDKMREDHLHTIADMAQTANAEYVPPEDPWDDFCKVDGRIVTGANPQSATNTARDTIKVYEGI  244 (247)
T ss_dssp             CCCCHHHHHHTTCHHHHHHTTCCCHHHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHHH
T ss_pred             cCCCcHHHhhhhhhhhccccchhhHHHHHHHCCCEEecCCcCCCceEEEcCCEEECCChHHHHHHHHHHHHHHhhh
Confidence            99998743                   355678999874  11235999999999999999999999999988653

>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A

Probab=100.00  E-value=1.6e-34  Score=236.85  Aligned_cols=189  Identities=16%  Similarity=0.226  Sum_probs=150.9

Q ss_pred             CCEEEEEecC--------------CCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceecccc---CC
Q 027785            8 KRSVLLLCGD--------------YMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR---GH   70 (219)
Q Consensus         8 ~~kv~il~~~--------------g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~---g~   70 (219)
                      +|||+|++.+              ||+..|+..|+++|+++|++++++|+++++.....+++...+  ..+....   |.
T Consensus        48 ~kkIlivlt~~~~~~~~~g~~~~~G~~~~E~~~p~~vL~~ag~~v~i~S~~g~~v~~d~~s~~~~~--~~~~~~~~~~g~  125 (291)
T 1n57_A           48 KHKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGLMTKFEYWAMPHKD--EKVMPFFEQHKS  125 (291)
T ss_dssp             SCEEEEECCSCCEEECTTSCEEECCBCHHHHHHHHHHHHHTTCCEEEEESSSCCCCBCGGGCCTTC--TTHHHHHHHHHH
T ss_pred             CCEEEEEeCCcccccccCCccCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCccccccccccccc--HHHHHHHHhccc
Confidence            4799999985              799999999999999999999999998865321111111000  0112222   67


Q ss_pred             ccccccCccCC-----CCCCccEEEEcCCCCcc-cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCc----ccCCce
Q 027785           71 NFALNATFDEI-----DPTKYDGLVIPGGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD----VVKGRK  140 (219)
Q Consensus        71 ~i~~~~~~~~~-----~~~~~D~liipGG~~~~-~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aG----lL~g~~  140 (219)
                      .+.++..++++     ++.+||+||||||.++. .+..++.+.+||+++++++++|++||+|+++|++++    ||+||+
T Consensus       126 ~l~~~~~l~~v~~~~~~~~~yD~livPGG~g~~~~l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~~La~a~~~~GLL~Gr~  205 (291)
T 1n57_A          126 LFRNPKKLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALRHGDNPLNGYS  205 (291)
T ss_dssp             HHHSCEEHHHHHHTCCTTCSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGTTSCCTTTTCE
T ss_pred             eecCCccHHHHhhhccCcccCCEEEecCCcchhhhhhhCHHHHHHHHHHHHcCCEEEEECccHHHHHhhcccCccCCCCE
Confidence            78888888873     56799999999998876 577899999999999999999999999999988884    999999


Q ss_pred             EeeCCCCHHHH-------------------HHCCCeEecCCCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHccccc
Q 027785          141 CTAYPPVKPVL-------------------IAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTIT  198 (219)
Q Consensus       141 ~t~~~~~~~~l-------------------~~~g~~~~~~~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~~~~  198 (219)
                      +|+||...+.+                   ++.|+.+++.+.+..+|+|||+|||+|+.++++|++++|+++.++..
T Consensus       206 ~Tt~~~~~e~~~~~~~~~~~~~P~~le~~L~~~ga~~~~~~~~~~vV~Dg~lITs~gp~s~~d~al~lve~l~g~~~  282 (291)
T 1n57_A          206 ICAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRKLLTGDSPFAANALGKLAAQEMLAAYA  282 (291)
T ss_dssp             ECCCCGGGGGTTTTTTSSSSCCSSCHHHHHHHTTCEECCSSCSCCEEEETTEEEESSGGGHHHHHHHHHHHHHHHHC
T ss_pred             EEeCCCHHHhhhccccccccccchhHHHHHHHCCCEEECCCCCCCEEEeCCEEECCCHHHHHHHHHHHHHHHhCchh
Confidence            99999877654                   34477777322223499999999999999999999999999988755

>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A

Probab=100.00  E-value=2e-33  Score=223.78  Aligned_cols=180  Identities=21%  Similarity=0.269  Sum_probs=144.3

Q ss_pred             CCEEEEEec-----CCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccc-------
Q 027785            8 KRSVLLLCG-----DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALN-------   75 (219)
Q Consensus         8 ~~kv~il~~-----~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~-------   75 (219)
                      ++||+|+++     +||+..|+..|+++|+.+|++++++|+++++...    +...++ .++.++.|+.+.++       
T Consensus         6 m~kv~ill~~~~~~~g~~~~E~~~p~~~l~~ag~~v~~~s~~g~~~~v----~d~~s~-~~~~~~~g~~i~~~~~~~~~~   80 (232)
T 1vhq_A            6 MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDV----INHLTG-EAMTETRNVLIEAARITRGEI   80 (232)
T ss_dssp             CCEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSBCSCC----BCTTTC-CBCSCCCBHHHHHTTTTTTCC
T ss_pred             CCeEEEEEccCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCCCcc----cccccc-cchhhhhhhhHHHHHhhhcCC
Confidence            469999999     9999999999999999999999999998764110    000011 13455667777666       


Q ss_pred             cCccCCCCCCccEEEEcCCCCcc-----------cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccC-CceEee
Q 027785           76 ATFDEIDPTKYDGLVIPGGRAPE-----------YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVK-GRKCTA  143 (219)
Q Consensus        76 ~~~~~~~~~~~D~liipGG~~~~-----------~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~-g~~~t~  143 (219)
                      ..++++++.+||+||||||.++.           .++.++.+.+||+++++++++|++||+|+++|+++  |+ ||++|+
T Consensus        81 ~~l~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~a--L~~Gr~~Tt  158 (232)
T 1vhq_A           81 RPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKI--FDFPLRLTI  158 (232)
T ss_dssp             EEGGGCCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHH--CSSCCEECC
T ss_pred             CCHHHcCcccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHH--hcCCCEEec
Confidence            78888777789999999998752           12248999999999999999999999999999999  79 999999


Q ss_pred             C-C-CCHHHHHHCCCeEecCCCcceEEE-cCCeEeCCCCCCHHHHHHHHHHHHccccc
Q 027785          144 Y-P-PVKPVLIAAGASWIEPETMAACVV-DGNIITGATYEGHPEFIRLFLKALGGTIT  198 (219)
Q Consensus       144 ~-~-~~~~~l~~~g~~~~~~~~~~~~v~-dg~liT~~g~~s~~~~~l~li~~l~~~~~  198 (219)
                      | | ..++.|++.|+.+++...+..+++ |||+|||+    ++++++++|+++.|...
T Consensus       159 h~~~~~~~~l~~~g~~~~~~~~~~~~vd~dg~liTs~----~~d~al~lv~~~~G~~~  212 (232)
T 1vhq_A          159 GTDIDTAEVLEEMGAEHVPCPVDDIVVDEDNKIVTTP----AYMLAQNIAEAASGIDK  212 (232)
T ss_dssp             CSCHHHHHHHHHTTCEECCCCTTCCEEETTTTEEEEC----GGGTCSSHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCEEecCCCCceEEecCCCEEECC----CHHHHHHHHHHHcCHHH
Confidence            9 5 677888888888887532223554 59999996    88999999999988843

>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}

Probab=99.97  E-value=5.6e-32  Score=215.88  Aligned_cols=168  Identities=21%  Similarity=0.250  Sum_probs=135.3

Q ss_pred             CCEEEEEec-----CCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccc-------
Q 027785            8 KRSVLLLCG-----DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALN-------   75 (219)
Q Consensus         8 ~~kv~il~~-----~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~-------   75 (219)
                      ++||+|++.     +||+..|+..|+++|+++|++++++|+++++...    ..+.++ .++.++.|+.+.++       
T Consensus        23 ~kkV~ill~~~~~~dG~e~~E~~~p~~vL~~aG~~V~~~S~~~g~~~~----~~~~~g-~~v~~s~g~~v~~d~~~~~~~   97 (242)
T 3l3b_A           23 ALNSAVILAGCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKNQKQV----VDHKKK-ESVGEVRNILVESARIARGSV   97 (242)
T ss_dssp             -CEEEEECCCSSTTTSCCHHHHHHHHHHHHHTTCEEEEEECSSBCSCE----EETTTT-EEESCCCBHHHHHHHHTTTCE
T ss_pred             cCEEEEEEecCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCcccc----cccccC-ccccccCCeEEecchhccccC
Confidence            379999998     9999999999999999999999999998764221    111111 24566778888777       


Q ss_pred             cCccCCCCCCccEEEEcCCCCcc----c--------ccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCc-ccCCceEe
Q 027785           76 ATFDEIDPTKYDGLVIPGGRAPE----Y--------LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD-VVKGRKCT  142 (219)
Q Consensus        76 ~~~~~~~~~~~D~liipGG~~~~----~--------~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aG-lL~g~~~t  142 (219)
                      .+++++++.+||+||||||.++.    .        +..++.+.+||+++++++|+|++||+|+++|+++| ||+||++|
T Consensus        98 ~~l~dv~~~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~~~La~ag~lL~Gr~~T  177 (242)
T 3l3b_A           98 YDIEQIRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVVALLKDIAKVKVT  177 (242)
T ss_dssp             EEGGGCCGGGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHHHHHHHHHTTTCCCEEC
T ss_pred             CChHHCCcccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhCcccCCCEEE
Confidence            67888887899999999998641    1        25679999999999999999999999999999999 99999999


Q ss_pred             eCCCCHHHHHHCCCeEecCCCcceEEEc--CCeEeCCCCCC
Q 027785          143 AYPPVKPVLIAAGASWIEPETMAACVVD--GNIITGATYEG  181 (219)
Q Consensus       143 ~~~~~~~~l~~~g~~~~~~~~~~~~v~d--g~liT~~g~~s  181 (219)
                      +||.....+++.|+.|++.+. ..+|+|  ||+||+.+...
T Consensus       178 ~~~~~~~~l~~~Ga~~~~~~~-~~vVvD~~g~liTs~a~~~  217 (242)
T 3l3b_A          178 IGEDSNGLIDKMGGVHVDCPT-IKSVKDDVNRIFSCSAYMR  217 (242)
T ss_dssp             CCC----CHHHHTCEECCCCT-TCCEEETTTTEEEECGGGS
T ss_pred             ecCChHHHHHHCCCEEEcCCC-CeEEEECCCCEEECcCccc
Confidence            999988778888999998531 137778  99999998743

>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3

Probab=99.91  E-value=1.5e-24  Score=194.67  Aligned_cols=151  Identities=18%  Similarity=0.232  Sum_probs=131.4

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      ++||+||+++|++..|+..++++|+.+|+++.++|++++                .+.++.|..+.++..++++++.+||
T Consensus       534 ~rkVaILl~dGfe~~El~~p~dvL~~AG~~V~ivS~~gg----------------~V~ss~G~~v~~d~~l~~v~~~~yD  597 (715)
T 1sy7_A          534 SRRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRS----------------KVTAANGSTVQPHHHLEGFRSTMVD  597 (715)
T ss_dssp             TCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESCSS----------------CEEBTTSCEECCSEETTTCCGGGSS
T ss_pred             CCEEEEEEcCCCCHHHHHHHHHHHHhcCCEEEEEECCCC----------------ceecCCCceEecccccccCCcccCC
Confidence            689999999999999999999999999999999999876                5777889999999999988777899


Q ss_pred             EEEEcCCC-CcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC-cccCCceEeeCCCCHHHHHHCCCeEecCCCcc
Q 027785           88 GLVIPGGR-APEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA-DVVKGRKCTAYPPVKPVLIAAGASWIEPETMA  165 (219)
Q Consensus        88 ~liipGG~-~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a-GlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~  165 (219)
                      +||||||. ++..+..++.+++||+++++++|+|++||+|+++|+++ ||.+-             ++.|+     .   
T Consensus       598 aViVPGG~~~~~~l~~~~~l~~~Lr~~~~~gK~IaAIC~G~~lLA~AlGL~~L-------------~~aGa-----~---  656 (715)
T 1sy7_A          598 AIFIPGGAKAAETLSKNGRALHWIREAFGHLKAIGATGEAVDLVAKAIALPQV-------------TVSSE-----A---  656 (715)
T ss_dssp             EEEECCCHHHHHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHHCCTTS-------------CCCCS-----S---
T ss_pred             EEEEcCCcccHhhhccCHHHHHHHHHHHhCCCEEEEECHHHHHHHHccCcHhH-------------HhcCC-----C---
Confidence            99999995 55556789999999999999999999999999999999 98322             12222     2   


Q ss_pred             eEEEcCCeEeCCCCC------------CHHHHHHHHHHHHcc
Q 027785          166 ACVVDGNIITGATYE------------GHPEFIRLFLKALGG  195 (219)
Q Consensus       166 ~~v~dg~liT~~g~~------------s~~~~~l~li~~l~~  195 (219)
                      .+|+||++||++|+.            ++.+++.++++.|..
T Consensus       657 ~VVvDg~lITs~gp~~~~l~~~~~i~~s~~~fa~~fi~~L~~  698 (715)
T 1sy7_A          657 EVHESYGVVTLKKVKPESFTDAVKIAKGAAGFLGEFFYAIAQ  698 (715)
T ss_dssp             SCEEETTEEEESSCCTTTTTSCCCCSTTCSSHHHHHHHHHHT
T ss_pred             cEEEeCCEEECCCCcccccccccccccCHHHHHHHHHHHHHc
Confidence            388999999999986            677899999998864

>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...

Probab=99.84  E-value=7.9e-21  Score=169.37  Aligned_cols=112  Identities=20%  Similarity=0.199  Sum_probs=106.2

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      ++||+||+.+||+..|+..++++|+++|+++.+++++++                .+.++.|..+.+|.+++++++.+||
T Consensus       600 grKVaILlaDGfEe~El~~pvdaLr~AG~~V~vVS~~~g----------------~V~gs~G~~V~aD~t~~~v~s~~fD  663 (753)
T 3ttv_A          600 GRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMG----------------EVTADDGTVLPIAATFAGAPSLTVD  663 (753)
T ss_dssp             TCEEEEECCTTCCHHHHHHHHHHHHHHTCEEEEEESSSS----------------EEECTTSCEEECCEETTTSCGGGCS
T ss_pred             CCEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEEcCCC----------------eEEeCCCCEEecccchhhCCCcCCC
Confidence            689999999999999999999999999999999999876                6888899999999999999888899


Q ss_pred             EEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCccc
Q 027785           88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVV  136 (219)
Q Consensus        88 ~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL  136 (219)
                      +|||||| ++..++.++.+++||+++++++|+|++||+|+++|+++||-
T Consensus       664 ALVVPGG-g~~~Lr~d~~vl~~Vre~~~~gKpIAAIC~Gp~lLa~AGL~  711 (753)
T 3ttv_A          664 AVIVPCG-NIADIADNGDANYYLMEAYKHLKPIALAGDARKFKATIKIA  711 (753)
T ss_dssp             EEEECCS-CGGGTTTCHHHHHHHHHHHHTTCCEEEEGGGGGGGGGGTCC
T ss_pred             EEEECCC-ChHHhhhCHHHHHHHHHHHhcCCeEEEECchHHHHHHcCCC
Confidence            9999999 88778899999999999999999999999999999999983

>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*

Probab=99.72  E-value=2.3e-17  Score=146.65  Aligned_cols=130  Identities=18%  Similarity=0.216  Sum_probs=110.7

Q ss_pred             CCEEEEEec--CCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCC
Q 027785            8 KRSVLLLCG--DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTK   85 (219)
Q Consensus         8 ~~kv~il~~--~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~   85 (219)
                      ++||+||+.  +|++..|+..+.++|+++|.++.++++..+                       .  .+|.+++++++.+
T Consensus       529 g~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vVs~~~g-----------------------~--~vD~t~~~~~s~~  583 (688)
T 2iuf_A          529 GLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVVAERXA-----------------------N--NVDETYSASDAVQ  583 (688)
T ss_dssp             TCEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEEESSCC-----------------------T--TCCEESTTCCGGG
T ss_pred             CCEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEEeccCC-----------------------c--ccccchhcCCccc
Confidence            689999999  999999999999999999999999998643                       0  5688888888889


Q ss_pred             ccEEEEcCCC-C----------------cccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCH
Q 027785           86 YDGLVIPGGR-A----------------PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVK  148 (219)
Q Consensus        86 ~D~liipGG~-~----------------~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~  148 (219)
                      ||+||||||. +                +..+..++.+++||++++++||+|++||+|+++|..+|+..           
T Consensus       584 fDAVvlPGG~~g~~~~~~~~~~~~~~~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~vL~~aGi~~-----------  652 (688)
T 2iuf_A          584 FDAVVVADGAEGLFGADSFTVEPSAGSGASTLYPAGRPLNILLDAFRFGKTVGALGSGSDALESGQISS-----------  652 (688)
T ss_dssp             CSEEEECTTCGGGCCTTTTTCCCCTTSCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHHHHHHTTCCT-----------
T ss_pred             cCeEEecCCCcccccccccccccccccchhhcccChHHHHHHHHHHHcCCEEEEECchHHHHHHcCCCC-----------
Confidence            9999999995 5                56688899999999999999999999999999999999853           


Q ss_pred             HHHHHCCCeEecCCCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHcc
Q 027785          149 PVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGG  195 (219)
Q Consensus       149 ~~l~~~g~~~~~~~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~  195 (219)
                                          .|+++||+.++  .-+++..+++.+..
T Consensus       653 --------------------~d~GVvts~~~--~~~f~~~fi~~la~  677 (688)
T 2iuf_A          653 --------------------ERQGVYTGKNA--GDAFAKDIKSGLST  677 (688)
T ss_dssp             --------------------TSTTEEEESSS--SHHHHHHHHHHHHH
T ss_pred             --------------------CCCCEEEcCCc--cHHHHHHHHHHHHh
Confidence                                24667777666  44577777776654

>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}

Probab=99.68  E-value=1.6e-16  Score=141.05  Aligned_cols=104  Identities=18%  Similarity=0.151  Sum_probs=94.0

Q ss_pred             CCEEEEEecCC-CCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCc
Q 027785            8 KRSVLLLCGDY-MEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKY   86 (219)
Q Consensus         8 ~~kv~il~~~g-~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~   86 (219)
                      +|||+||+.+| ++..|+..+.+.|+++|..+.++++..+                     .|    +|.+++++++.+|
T Consensus       537 grKVaILvadG~fE~~El~~p~~aL~~aGa~V~vVsp~~g---------------------~G----vD~t~~~~~s~~f  591 (688)
T 3ej6_A          537 TLRVGVLSTTKGGSLDKAKALKEQLEKDGLKVTVIAEYLA---------------------SG----VDQTYSAADATAF  591 (688)
T ss_dssp             TCEEEEECCSSSSHHHHHHHHHHHHHHTTCEEEEEESSCC---------------------TT----CCEETTTCCGGGC
T ss_pred             CCEEEEEccCCCccHHHHHHHHHHHHHCCCEEEEEeCCCC---------------------CC----cccCcccCChhcC
Confidence            68999999999 9999999999999999999999998753                     13    6888999888999


Q ss_pred             cEEEEcCCCCc--------ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCccc
Q 027785           87 DGLVIPGGRAP--------EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVV  136 (219)
Q Consensus        87 D~liipGG~~~--------~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL  136 (219)
                      |+|+||||...        ..++.++.+++||+++++++|+|++||+|+++|..+|+-
T Consensus       592 DAVvlPGG~~~~~~~~~~~d~Lr~~~~a~~fV~e~~~hgKpIAAIchgp~lL~~AGI~  649 (688)
T 3ej6_A          592 DAVVVAEGAERVFSGKGAMSPLFPAGRPSQILTDGYRWGKPVAAVGSAKKALQSIGVE  649 (688)
T ss_dssp             SEEEECTTCCTTTSTTTTCCTTSCTTHHHHHHHHHHHTTCCEEEEGGGHHHHHHTTCC
T ss_pred             cEEEECCCcccccccccchhhhccCHHHHHHHHHHHHcCCEEEEeCccHHHHHHcCCC
Confidence            99999999632        557889999999999999999999999999999999983

>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}

Probab=99.29  E-value=4.7e-12  Score=98.69  Aligned_cols=93  Identities=23%  Similarity=0.319  Sum_probs=73.6

Q ss_pred             CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG   88 (219)
Q Consensus         9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~   88 (219)
                      +||+|+.+++++..  ..+.+.|+.+|+++.+++..                                  +  +..++|.
T Consensus         3 ~~i~il~~~~~~~~--~~~~~~l~~~g~~~~~~~~~----------------------------------~--~~~~~d~   44 (213)
T 3d54_D            3 PRACVVVYPGSNCD--RDAYHALEINGFEPSYVGLD----------------------------------D--KLDDYEL   44 (213)
T ss_dssp             CEEEEECCTTEEEH--HHHHHHHHTTTCEEEEECTT----------------------------------C--CCSSCSE
T ss_pred             cEEEEEEcCCCCcc--HHHHHHHHHCCCEEEEEecC----------------------------------C--CcccCCE
Confidence            58999999988741  24589999999988887431                                  1  1247999


Q ss_pred             EEEcCCCCc-cc-----ccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCc
Q 027785           89 LVIPGGRAP-EY-----LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGR  139 (219)
Q Consensus        89 liipGG~~~-~~-----~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~  139 (219)
                      ||||||.+. ..     ...++.+.+||+++.+++++|++||.|.++|+.+|+|+|+
T Consensus        45 lil~Gg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pilgIC~G~qlLa~aGll~g~  101 (213)
T 3d54_D           45 IILPGGFSYGDYLRPGAVAAREKIAFEIAKAAERGKLIMGICNGFQILIEMGLLKGA  101 (213)
T ss_dssp             EEECEECGGGGCSSTTHHHHTSTTHHHHHHHHHHTCEEEECHHHHHHHHHHTSSCSE
T ss_pred             EEECCCCchhhhhccccccccHHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCC
Confidence            999999653 22     1234678999999999999999999999999999999994

>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*

Probab=98.77  E-value=3e-08  Score=79.08  Aligned_cols=94  Identities=16%  Similarity=0.176  Sum_probs=69.8

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      +|||+||....++  ....+...|+..|++++++....+.                       .      +.. +..+||
T Consensus         3 ~~~vliiqh~~~e--~~~~i~~~l~~~G~~v~v~~~~~~~-----------------------~------~p~-~~~~~d   50 (250)
T 3m3p_A            3 LKPVMIIQFSASE--GPGHFGDFLAGEHIPFQVLRMDRSD-----------------------P------LPA-EIRDCS   50 (250)
T ss_dssp             CCCEEEEESSSSC--CCHHHHHHHHHTTCCEEEEEGGGTC-----------------------C------CCS-CGGGSS
T ss_pred             CCeEEEEECCCCC--CHHHHHHHHHHCCCeEEEEeccCCC-----------------------c------CcC-ccccCC
Confidence            4589999988887  5556667799999999888654320                       0      111 124799


Q ss_pred             EEEEcCCCCc-cc-ccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           88 GLVIPGGRAP-EY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        88 ~liipGG~~~-~~-~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      .|||+||... .. .+....+.++|+++.+.++||.+||.|.++|+.+
T Consensus        51 ~lIl~GGp~~~~d~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qll~~~   98 (250)
T 3m3p_A           51 GLAMMGGPMSANDDLPWMPTLLALIRDAVAQRVPVIGHCLGGQLLAKA   98 (250)
T ss_dssp             EEEECCCSSCTTSCCTTHHHHHHHHHHHHHHTCCEEEETHHHHHHHHH
T ss_pred             EEEECCCCCcccccchHHHHHHHHHHHHHHcCCCEEEECHHHHHHHHH
Confidence            9999999753 21 2223567899999999999999999999999976

>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}

Probab=98.74  E-value=7.4e-08  Score=76.15  Aligned_cols=93  Identities=17%  Similarity=0.266  Sum_probs=69.2

Q ss_pred             CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG   88 (219)
Q Consensus         9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~   88 (219)
                      +||+++..+.++  ....+.+.++..|++++++....+                       -      .+.+ +..+||+
T Consensus         1 m~i~vi~h~~~e--~~g~~~~~l~~~g~~~~~~~~~~~-----------------------~------~~p~-~~~~~d~   48 (236)
T 3l7n_A            1 MRIHFILHETFE--APGAYLAWAALRGHDVSMTKVYRY-----------------------E------KLPK-DIDDFDM   48 (236)
T ss_dssp             CEEEEEECCTTS--CCHHHHHHHHHTTCEEEEEEGGGT-----------------------C------CCCS-CGGGCSE
T ss_pred             CeEEEEeCCCCC--CchHHHHHHHHCCCeEEEEeeeCC-----------------------C------CCCC-CccccCE
Confidence            389999988888  555666789999999988865422                       0      1111 2347999


Q ss_pred             EEEcCCCCc-cc----ccCC--hHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           89 LVIPGGRAP-EY----LAMN--DSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        89 liipGG~~~-~~----~~~~--~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      |||+||++. ..    .+.-  ....++|+++.++++||.+||.|.++|+.+
T Consensus        49 lii~GGp~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~  100 (236)
T 3l7n_A           49 LILMGGPQSPSSTKKEFPYYDAQAEVKLIQKAAKSEKIIVGVCLGAQLMGVA  100 (236)
T ss_dssp             EEECCCSSCTTCCTTTCTTCCHHHHHHHHHHHHHTTCEEEEETHHHHHHHHH
T ss_pred             EEECCCCCCcccccccCcccchHHHHHHHHHHHHcCCCEEEEchHHHHHHHH
Confidence            999999864 21    1111  347899999999999999999999999976

>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1

Probab=98.66  E-value=2.5e-08  Score=77.99  Aligned_cols=86  Identities=22%  Similarity=0.381  Sum_probs=63.5

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      .+||+|+.+++    .+....+.|+++|.++.+++..                                  +++  .++|
T Consensus        23 ~~~I~il~~~~----~~~~~~~~l~~~G~~~~~~~~~----------------------------------~~l--~~~D   62 (219)
T 1q7r_A           23 NMKIGVLGLQG----AVREHVRAIEACGAEAVIVKKS----------------------------------EQL--EGLD   62 (219)
T ss_dssp             CCEEEEESCGG----GCHHHHHHHHHTTCEEEEECSG----------------------------------GGG--TTCS
T ss_pred             CCEEEEEeCCC----CcHHHHHHHHHCCCEEEEECCH----------------------------------HHH--hhCC
Confidence            56899997654    2334568899999988776431                                  112  3699


Q ss_pred             EEEEcCCCCcc--cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           88 GLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        88 ~liipGG~~~~--~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      .||+|||.+..  .+..+..+.++|+++.++++||.+||.|.++|+.+
T Consensus        63 glil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~QlL~~~  110 (219)
T 1q7r_A           63 GLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPMFGTCAGLILLAKR  110 (219)
T ss_dssp             EEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETTHHHHHEEE
T ss_pred             EEEECCCChHHHHHHhhhhHHHHHHHHHHHcCCeEEEECHHHHHHHHH
Confidence            99999997531  12223456799999999999999999999999975

>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*

Probab=98.65  E-value=2.7e-08  Score=76.35  Aligned_cols=85  Identities=24%  Similarity=0.358  Sum_probs=61.7

Q ss_pred             CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG   88 (219)
Q Consensus         9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~   88 (219)
                      +||+|+-+.+    .+....+.|+++|.++.++++.                                  ++  ..++|.
T Consensus         2 m~I~il~~~~----~~~~~~~~l~~~g~~~~~~~~~----------------------------------~~--l~~~d~   41 (196)
T 2nv0_A            2 LTIGVLGLQG----AVREHIHAIEACGAAGLVVKRP----------------------------------EQ--LNEVDG   41 (196)
T ss_dssp             CEEEEECSSS----CCHHHHHHHHHTTCEEEEECSG----------------------------------GG--GGGCSE
T ss_pred             cEEEEEEccC----CcHHHHHHHHHCCCEEEEeCCh----------------------------------HH--HhhCCE
Confidence            5899997532    3334468899999988776421                                  11  136999


Q ss_pred             EEEcCCCCcc--cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           89 LVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        89 liipGG~~~~--~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      |++|||....  .++....+.++|+++.++++|+.+||.|.++|+.+
T Consensus        42 iil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilgIC~G~q~l~~~   88 (196)
T 2nv0_A           42 LILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAGLIILAKE   88 (196)
T ss_dssp             EEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHHHHHHSBC
T ss_pred             EEECCCChhhHHHHhhhHHHHHHHHHHHHCCCcEEEECHHHHHHHHH
Confidence            9999997421  12223445899999999999999999999999985

>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}

Probab=98.54  E-value=7e-08  Score=74.77  Aligned_cols=86  Identities=20%  Similarity=0.299  Sum_probs=62.8

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      ++||+|+-+++    .+....+.|+.+|.++.+++..                                  +++  .++|
T Consensus        20 ~~~I~ii~~~~----~~~~~~~~l~~~g~~~~~~~~~----------------------------------~~l--~~~d   59 (208)
T 2iss_D           20 HMKIGVLGVQG----DVREHVEALHKLGVETLIVKLP----------------------------------EQL--DMVD   59 (208)
T ss_dssp             CCEEEEECSSS----CHHHHHHHHHHTTCEEEEECSG----------------------------------GGG--GGCS
T ss_pred             CcEEEEEECCC----chHHHHHHHHHCCCEEEEeCCh----------------------------------HHH--hhCC
Confidence            46899996533    5666788888999888776421                                  011  3699


Q ss_pred             EEEEcCCCCcc--cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           88 GLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        88 ~liipGG~~~~--~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      .|++|||....  .+.....+.++|+++.++++||.+||.|.++|+.+
T Consensus        60 ~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~  107 (208)
T 2iss_D           60 GLILPGGESTTMIRILKEMDMDEKLVERINNGLPVFATCAGVILLAKR  107 (208)
T ss_dssp             EEEECSSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHHHHHHEEE
T ss_pred             EEEECCCcHHHHHhhhhhhhHHHHHHHHHHCCCeEEEECHHHHHHHHH
Confidence            99999985321  11122346789999999999999999999999976

>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*

Probab=98.53  E-value=2.9e-07  Score=87.84  Aligned_cols=100  Identities=15%  Similarity=0.171  Sum_probs=72.7

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      +.||+|+.++|.+-  .......|+.+|+++.++....                          +..+  -.  ...++|
T Consensus      1047 ~pkVaIi~~~G~N~--~~~~~~A~~~aG~~~~~v~~~d--------------------------l~~~--~~--~l~~~d 1094 (1303)
T 3ugj_A         1047 RPKVAVLREQGVNS--HVEMAAAFHRAGFDAIDVHMSD--------------------------LLGG--RI--GLGNFH 1094 (1303)
T ss_dssp             CCEEEEEECTTCCC--HHHHHHHHHHTTCEEEEEEHHH--------------------------HHTT--SC--CGGGCS
T ss_pred             CCEEEEEecCCcCC--HHHHHHHHHHhCCceEEEeecc--------------------------cccC--cc--cHhhCC
Confidence            35899999999883  3445668889999887763210                          0000  01  124799


Q ss_pred             EEEEcCCCCccc-----------ccCChHHHHHHHHHH-hcCCeEEEEehhHHHHHhC-cccCCc
Q 027785           88 GLVIPGGRAPEY-----------LAMNDSVIDLVRKFS-NSGKTIASICHGQLILAAA-DVVKGR  139 (219)
Q Consensus        88 ~liipGG~~~~~-----------~~~~~~l~~~l~~~~-~~~~~v~~ic~G~~~La~a-GlL~g~  139 (219)
                      .|++|||....+           ...++.+.+.|++++ ++++++.+||+|.++|.++ |||.|.
T Consensus      1095 ~lvlPGGfSygD~l~~g~~~a~~~l~~~~l~~~l~~~~~~~g~pvLGICnG~QlL~e~~gllPg~ 1159 (1303)
T 3ugj_A         1095 ALVACGGFSYGDVLGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNLRELIPGS 1159 (1303)
T ss_dssp             EEEECCSCGGGGTTSTTHHHHHHHHTSHHHHHHHHHHHHSSSCEEEEETHHHHHHHTTGGGSTTC
T ss_pred             EEEECCCCcchhhhccchhHHHHHHhchhHHHHHHHHHHhCCCcEEEECHHHHHHHHhcCcCCCC
Confidence            999999964211           234567888889876 5899999999999999999 999986

>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1

Probab=98.50  E-value=2.1e-07  Score=71.58  Aligned_cols=86  Identities=24%  Similarity=0.241  Sum_probs=62.2

Q ss_pred             CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG   88 (219)
Q Consensus         9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~   88 (219)
                      +||+|+-+ ++.  .+....+.|+++|.++.+++..                                  ++  ..++|.
T Consensus         3 ~~I~iid~-~~~--~~~~~~~~l~~~G~~~~~~~~~----------------------------------~~--l~~~d~   43 (200)
T 1ka9_H            3 MKALLIDY-GSG--NLRSAAKALEAAGFSVAVAQDP----------------------------------KA--HEEADL   43 (200)
T ss_dssp             CEEEEECS-SCS--CHHHHHHHHHHTTCEEEEESST----------------------------------TS--CSSCSE
T ss_pred             cEEEEEeC-CCc--cHHHHHHHHHHCCCeEEEecCh----------------------------------HH--cccCCE
Confidence            58988844 322  4455689999999988877421                                  01  236999


Q ss_pred             EEEcCCCCccc-c--cCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           89 LVIPGGRAPEY-L--AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        89 liipGG~~~~~-~--~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      |++||+..+.. .  ..+..+.++|+++.++++||.+||.|.++|+.+
T Consensus        44 lil~G~g~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~   91 (200)
T 1ka9_H           44 LVLPGQGHFGQVMRAFQESGFVERVRRHLERGLPFLGICVGMQVLYEG   91 (200)
T ss_dssp             EEECCCSCHHHHHHTTSSSCTHHHHHHHHHTTCCEEECTHHHHTTSSE
T ss_pred             EEECCCCcHHHHHHHHHhcCHHHHHHHHHHcCCeEEEEcHHHHHHHHh
Confidence            99998543211 1  112457899999999999999999999999998

>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.45  E-value=1.7e-07  Score=71.47  Aligned_cols=85  Identities=24%  Similarity=0.308  Sum_probs=63.5

Q ss_pred             CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG   88 (219)
Q Consensus         9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~   88 (219)
                      ++|+|+..++    .+....+.|+++|.++.+++..                               .   ++  .++|.
T Consensus         3 p~Igi~~~~~----~~~~~~~~l~~~G~~~~~~~~~-------------------------------~---~l--~~~dg   42 (191)
T 2ywd_A            3 GVVGVLALQG----DFREHKEALKRLGIEAKEVRKK-------------------------------E---HL--EGLKA   42 (191)
T ss_dssp             CCEEEECSSS----CHHHHHHHHHTTTCCCEEECSG-------------------------------G---GG--TTCSE
T ss_pred             cEEEEEecCC----chHHHHHHHHHCCCEEEEeCCh-------------------------------h---hh--ccCCE
Confidence            4799998764    4567889999999877766421                               0   11  36899


Q ss_pred             EEEcCCCCc--ccccCChHHHHHHHHHHhcC-CeEEEEehhHHHHHhC
Q 027785           89 LVIPGGRAP--EYLAMNDSVIDLVRKFSNSG-KTIASICHGQLILAAA  133 (219)
Q Consensus        89 liipGG~~~--~~~~~~~~l~~~l~~~~~~~-~~v~~ic~G~~~La~a  133 (219)
                      |++|||...  ..+..+..+.++|+++.+++ +||.+||.|.++|+.+
T Consensus        43 lil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~~PilGiC~G~Q~l~~~   90 (191)
T 2ywd_A           43 LIVPGGESTTIGKLAREYGIEDEVRKRVEEGSLALFGTCAGAIWLAKE   90 (191)
T ss_dssp             EEECSSCHHHHHHHHHHTTHHHHHHHHHHTTCCEEEEETHHHHHHEEE
T ss_pred             EEECCCChhhhHHhhhhhhHHHHHHHHHHCCCCeEEEECHHHHHHHHH
Confidence            999999521  22222345789999999999 9999999999999976

>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A

Probab=98.36  E-value=9.2e-07  Score=67.31  Aligned_cols=86  Identities=16%  Similarity=0.302  Sum_probs=61.9

Q ss_pred             EEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEE
Q 027785           11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLV   90 (219)
Q Consensus        11 v~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~li   90 (219)
                      |+|+-+.+..   ...+.+.|+++|.++.++....                               .++++...++|.|+
T Consensus         3 i~iid~~~~~---~~~~~~~l~~~G~~~~~~~~~~-------------------------------~~~~~~~~~~dgli   48 (189)
T 1wl8_A            3 IVIMDNGGQY---VHRIWRTLRYLGVETKIIPNTT-------------------------------PLEEIKAMNPKGII   48 (189)
T ss_dssp             EEEEECSCTT---HHHHHHHHHHTTCEEEEEETTC-------------------------------CHHHHHHTCCSEEE
T ss_pred             EEEEECCCch---HHHHHHHHHHCCCeEEEEECCC-------------------------------ChHHhcccCCCEEE
Confidence            6666554332   4577889999999988876532                               11111113699999


Q ss_pred             EcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           91 IPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        91 ipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      +|||..+.   ....+.++|+++.++++|+.+||.|.++|+.+
T Consensus        49 l~Gg~~~~---~~~~~~~~i~~~~~~~~PilGIC~G~Q~l~~~   88 (189)
T 1wl8_A           49 FSGGPSLE---NTGNCEKVLEHYDEFNVPILGICLGHQLIAKF   88 (189)
T ss_dssp             ECCCSCTT---CCTTHHHHHHTGGGTCSCEEEETHHHHHHHHH
T ss_pred             ECCCCChh---hhhhHHHHHHHHhhCCCeEEEEcHHHHHHHHH
Confidence            99997332   24556889987778999999999999999986

>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G

Probab=98.33  E-value=3.5e-07  Score=71.70  Aligned_cols=86  Identities=19%  Similarity=0.291  Sum_probs=62.2

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhC---CCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCC
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAF---GVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT   84 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~a---g~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~   84 (219)
                      .++|+|+.+++.    +....+.|+++   |.++..++..                                  +++  .
T Consensus         3 ~~~I~Il~~~~~----~~~~~~~l~~~~~~G~~~~~~~~~----------------------------------~~l--~   42 (227)
T 2abw_A            3 EITIGVLSLQGD----FEPHINHFIKLQIPSLNIIQVRNV----------------------------------HDL--G   42 (227)
T ss_dssp             CEEEEEECTTSC----CHHHHHHHHTTCCTTEEEEEECSH----------------------------------HHH--H
T ss_pred             CcEEEEEeCCCC----cHHHHHHHHHhccCCeEEEEEcCc----------------------------------ccc--c
Confidence            358999987642    34568888888   8766555321                                  111  2


Q ss_pred             CccEEEEcCCCCc--ccccCC--hHHHHHHHHHHhc-CCeEEEEehhHHHHHhC
Q 027785           85 KYDGLVIPGGRAP--EYLAMN--DSVIDLVRKFSNS-GKTIASICHGQLILAAA  133 (219)
Q Consensus        85 ~~D~liipGG~~~--~~~~~~--~~l~~~l~~~~~~-~~~v~~ic~G~~~La~a  133 (219)
                      ++|.||+|||...  ..+..+  ..+.++|+++.++ ++||.+||.|.++|+.+
T Consensus        43 ~~dglil~GG~~~~~~~~~~~d~~~~~~~i~~~~~~~g~PilGIC~G~QlL~~~   96 (227)
T 2abw_A           43 LCDGLVIPGGESTTVRRCCAYENDTLYNALVHFIHVLKKPIWGTCAGCILLSKN   96 (227)
T ss_dssp             TCSEEEECCSCHHHHHHHTTHHHHHHHHHHHHHHHTSCCCEEEETHHHHHTEEE
T ss_pred             cCCEEEECCCcHHHHHHHHHHhHHHHHHHHHHHHHhcCCEEEEECHHHHHHHHH
Confidence            5999999998632  122222  5689999999999 99999999999999986

>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}

Probab=98.23  E-value=2.3e-06  Score=64.85  Aligned_cols=81  Identities=20%  Similarity=0.296  Sum_probs=56.5

Q ss_pred             EEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEE
Q 027785           10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGL   89 (219)
Q Consensus        10 kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l   89 (219)
                      ||+|+-.++    .+....+.|+++|.++.+++..                               .   +  ..++|.|
T Consensus         2 ~i~vl~~~g----~~~~~~~~l~~~G~~~~~~~~~-------------------------------~---~--~~~~dgl   41 (186)
T 2ywj_A            2 IIGVLAIQG----DVEEHEEAIKKAGYEAKKVKRV-------------------------------E---D--LEGIDAL   41 (186)
T ss_dssp             EEEEECSSS----CCHHHHHHHHHTTSEEEEECSG-------------------------------G---G--GTTCSEE
T ss_pred             EEEEEecCc----chHHHHHHHHHCCCEEEEECCh-------------------------------H---H--hccCCEE
Confidence            799996644    3455678999999888776421                               0   1  2368999


Q ss_pred             EEcCCCCccc--ccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           90 VIPGGRAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        90 iipGG~~~~~--~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ++|||.+...  ......+.++++   ++++||.+||.|.++|+.+
T Consensus        42 il~GG~~~~~~~~~~~~~~~~~i~---~~~~PilGIC~G~Qll~~~   84 (186)
T 2ywj_A           42 IIPGGESTAIGKLMKKYGLLEKIK---NSNLPILGTCAGMVLLSKG   84 (186)
T ss_dssp             EECCSCHHHHHHHHHHTTHHHHHH---TCCCCEEEETHHHHHHSSC
T ss_pred             EECCCCchhhhhhhhccCHHHHHH---hcCCcEEEECHHHHHHHHH
Confidence            9999975321  111123455665   7899999999999999987

>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B

Probab=98.19  E-value=2.9e-06  Score=65.13  Aligned_cols=85  Identities=20%  Similarity=0.302  Sum_probs=58.1

Q ss_pred             EEEEEecCCCCchhhHHHHHHHHhCC-----CeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCC
Q 027785           10 SVLLLCGDYMEDYEAMVPFQALLAFG-----VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT   84 (219)
Q Consensus        10 kv~il~~~g~~~~e~~~~~~~l~~ag-----~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~   84 (219)
                      ||+|+-+..-+   +......|++.|     .++.+++..                              +      + .
T Consensus         2 ~I~iid~~~g~---~~s~~~~l~~~G~~~~~~~~~~~~~~------------------------------~------~-~   41 (201)
T 1gpw_B            2 RIGIISVGPGN---IMNLYRGVKRASENFEDVSIELVESP------------------------------R------N-D   41 (201)
T ss_dssp             EEEEECCSSSC---CHHHHHHHHHHSTTBSSCEEEEECSC------------------------------C------S-S
T ss_pred             EEEEEecCCch---HHHHHHHHHHcCCCCCceEEEEECCC------------------------------c------c-c
Confidence            78888665222   244456788878     777765321                              1      1 3


Q ss_pred             CccEEEEcCCCCccc-cc--CChHHHHHHHHHHhcCCeEEEEehhHHHHHhCc
Q 027785           85 KYDGLVIPGGRAPEY-LA--MNDSVIDLVRKFSNSGKTIASICHGQLILAAAD  134 (219)
Q Consensus        85 ~~D~liipGG~~~~~-~~--~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aG  134 (219)
                      ++|.|++||+..+.. ..  .+..+.++|+++.++++||.+||.|.++|+.+.
T Consensus        42 ~~dglilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~~   94 (201)
T 1gpw_B           42 LYDLLFIPGVGHFGEGMRRLRENDLIDFVRKHVEDERYVVGVCLGMQLLFEES   94 (201)
T ss_dssp             CCSEEEECCCSCSHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHTTSSEE
T ss_pred             CCCEEEECCCCcHHHHHHHHHhhCHHHHHHHHHHcCCeEEEEChhHHHHHHhh
Confidence            699999999633221 11  011367899999999999999999999999874

>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1

Probab=98.17  E-value=2.2e-06  Score=65.63  Aligned_cols=89  Identities=15%  Similarity=0.132  Sum_probs=59.5

Q ss_pred             EEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEE
Q 027785           11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLV   90 (219)
Q Consensus        11 v~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~li   90 (219)
                      |+|+-..+..   -..+.+.|+++|.++.++..+..                              .++++...++|.|+
T Consensus         4 i~iid~~~s~---~~~~~~~l~~~G~~~~v~~~~~~------------------------------~~~~~~~~~~dgli   50 (195)
T 1qdl_B            4 TLIIDNYDSF---VYNIAQIVGELGSYPIVIRNDEI------------------------------SIKGIERIDPDRLI   50 (195)
T ss_dssp             EEEEECSCSS---HHHHHHHHHHTTCEEEEEETTTS------------------------------CHHHHHHHCCSEEE
T ss_pred             EEEEECCCch---HHHHHHHHHhCCCEEEEEeCCCC------------------------------CHHHHhhCCCCEEE
Confidence            7777643322   24678899999999888765321                              11122112599999


Q ss_pred             EcCCCCccc-ccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           91 IPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        91 ipGG~~~~~-~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ++||.+... ..+.+...++|+++ +.++|+.+||.|.++|+.+
T Consensus        51 l~gG~~~~~~~~~~~~~~~~i~~~-~~~~PvLGIC~G~QlL~~~   93 (195)
T 1qdl_B           51 ISPGPGTPEKREDIGVSLDVIKYL-GKRTPILGVCLGHQAIGYA   93 (195)
T ss_dssp             ECCCSSCTTSHHHHTTHHHHHHHH-TTTSCEEEETHHHHHHHHH
T ss_pred             ECCCCCChhhhhhhhHHHHHHHHh-cCCCcEEEEehHHHHHHHH
Confidence            988876422 11122356888875 7899999999999999986

>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}

Probab=98.13  E-value=7.6e-07  Score=68.93  Aligned_cols=87  Identities=18%  Similarity=0.199  Sum_probs=58.6

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      ++||+|+=|-   ..-+..+...|++.|.++.+++..                                  +++  .++|
T Consensus         2 ~~~I~iiD~g---~~n~~si~~al~~~G~~~~v~~~~----------------------------------~~l--~~~D   42 (211)
T 4gud_A            2 TQNVVIIDTG---CANISSVKFAIERLGYAVTISRDP----------------------------------QVV--LAAD   42 (211)
T ss_dssp             -CCEEEECCC---CTTHHHHHHHHHHTTCCEEEECCH----------------------------------HHH--HHCS
T ss_pred             CCEEEEEECC---CChHHHHHHHHHHCCCEEEEECCH----------------------------------HHH--hCCC
Confidence            4688887442   234566788899999988775321                                  111  2579


Q ss_pred             EEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        88 ~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      .||+||+..+......-...++++...+.++||.+||.|.++|+.+
T Consensus        43 ~lilPG~g~~~~~~~~~~~~~~i~~~~~~~~PvlGIClG~QlL~~~   88 (211)
T 4gud_A           43 KLFLPGVGTASEAMKNLTERDLIELVKRVEKPLLGICLGMQLLGKL   88 (211)
T ss_dssp             EEEECCCSCHHHHHHHHHHTTCHHHHHHCCSCEEEETHHHHTTSSE
T ss_pred             EEEECCCCCHHHHHHHHHhcChHHHHHHcCCCEEEEchhHhHHHHH
Confidence            9999986544322112223346777788999999999999999875

>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1

Probab=98.08  E-value=9.5e-06  Score=64.07  Aligned_cols=92  Identities=16%  Similarity=0.138  Sum_probs=62.6

Q ss_pred             EEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEE
Q 027785           10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGL   89 (219)
Q Consensus        10 kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l   89 (219)
                      ||.|+....+  .....+...|+..|.++.++..+..                             ..+.+ ...++|.|
T Consensus        14 ~~~~i~~~~~--~~~~~i~~~l~~~G~~v~v~~~~~~-----------------------------~~~~~-~l~~~Dgl   61 (239)
T 1o1y_A           14 RVLAIRHVEI--EDLGMMEDIFREKNWSFDYLDTPKG-----------------------------EKLER-PLEEYSLV   61 (239)
T ss_dssp             EEEEECSSTT--SSCTHHHHHHHHTTCEEEEECGGGT-----------------------------CCCSS-CGGGCSEE
T ss_pred             EEEEEECCCC--CCchHHHHHHHhCCCcEEEeCCcCc-----------------------------ccccc-chhcCCEE
Confidence            5555554444  4666788899999988876533210                             01111 12479999


Q ss_pred             EEcCCCC-ccc---ccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           90 VIPGGRA-PEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        90 iipGG~~-~~~---~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      |+|||.. +..   .+.-..+.++|+++.++++||.+||.|.++|+.+
T Consensus        62 il~GG~~~~~~~~~~~~l~~~~~~i~~~~~~~~PiLGIC~G~QlL~~a  109 (239)
T 1o1y_A           62 VLLGGYMGAYEEEKYPFLKYEFQLIEEILKKEIPFLGICLGSQMLAKV  109 (239)
T ss_dssp             EECCCSCCTTCTTTCTHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHH
T ss_pred             EECCCCccccCCccChhHHHHHHHHHHHHHCCCCEEEEchhHHHHHHH
Confidence            9999973 211   1111367899999999999999999999999986

>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*

Probab=98.05  E-value=1.4e-05  Score=67.21  Aligned_cols=87  Identities=20%  Similarity=0.236  Sum_probs=64.7

Q ss_pred             CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG   88 (219)
Q Consensus         9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~   88 (219)
                      .||+++=+ |+.    ......|.++|.++.++..+..                               .+++...++|.
T Consensus       191 ~~V~viD~-G~k----~ni~r~L~~~G~~v~vvp~~~~-------------------------------~e~i~~~~~DG  234 (379)
T 1a9x_B          191 FHVVAYDF-GAK----RNILRMLVDRGCRLTIVPAQTS-------------------------------AEDVLKMNPDG  234 (379)
T ss_dssp             EEEEEEES-SCC----HHHHHHHHHTTEEEEEEETTCC-------------------------------HHHHHTTCCSE
T ss_pred             CEEEEEEC-CCh----HHHHHHHHHCCCEEEEEeccCC-------------------------------HHHHhhcCCCE
Confidence            47777776 554    5578889999998888743311                               11111136999


Q ss_pred             EEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           89 LVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        89 liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ||++||++..  ......+++|+++.++++||.+||.|.++|+.+
T Consensus       235 liLsGGPgdp--~~~~~~~~~Ir~~~~~~~PILGIClG~QLLa~A  277 (379)
T 1a9x_B          235 IFLSNGPGDP--APCDYAITAIQKFLETDIPVFGICLGHQLLALA  277 (379)
T ss_dssp             EEECCCSBCS--TTCHHHHHHHHHHTTSCCCEEEETHHHHHHHHH
T ss_pred             EEEeCCCCCh--HHHHHHHHHHHHHHHcCCCEEEECchHHHHHHH
Confidence            9999998632  235788999999999999999999999999976

>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}

Probab=97.94  E-value=1.3e-05  Score=63.93  Aligned_cols=49  Identities=35%  Similarity=0.626  Sum_probs=38.9

Q ss_pred             CccEEEEcCCCC--cccc-------------cCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           85 KYDGLVIPGGRA--PEYL-------------AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        85 ~~D~liipGG~~--~~~~-------------~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      .+|.|+|+||.+  +..+             .++...+++|+++.++++||.+||.|.++|+.+
T Consensus        61 ~~DGlil~GG~~v~P~~yg~~~~~~~~~~~~~rd~~~~~lir~a~~~~~PiLGIC~G~Qll~~a  124 (254)
T 3fij_A           61 LVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGMQLVNVA  124 (254)
T ss_dssp             TCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTTCCEEEETHHHHHHHHH
T ss_pred             hCCEEEECCCCCCChhhcCCccCcccCCcChhhhHHHHHHHHHHHHcCCCEEEECHHHHHHHHH
Confidence            699999999964  1111             112347899999999999999999999999986

>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}

Probab=97.87  E-value=2.8e-06  Score=66.23  Aligned_cols=87  Identities=16%  Similarity=0.167  Sum_probs=53.3

Q ss_pred             CEEEEEecC-CCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785            9 RSVLLLCGD-YMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus         9 ~kv~il~~~-g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      +||+|+-+. ++.    ..+...|+.+|.++.++..+..                               .+++...++|
T Consensus        25 ~~I~iiD~g~~~~----~~i~~~l~~~G~~~~vv~~~~~-------------------------------~~~l~~~~~d   69 (218)
T 2vpi_A           25 GAVVILDAGAQYG----KVIDRRVRELFVQSEIFPLETP-------------------------------AFAIKEQGFR   69 (218)
T ss_dssp             TCEEEEECSTTTT----HHHHHHHHHTTCCEEEECTTCC-------------------------------HHHHHHHTCS
T ss_pred             CeEEEEECCCchH----HHHHHHHHHCCCEEEEEECCCC-------------------------------hHHHhhcCCC
Confidence            689998654 442    4667889999988888754321                               1111113699


Q ss_pred             EEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        88 ~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      .|++|||.+.......+   .+.++..++++||.+||.|.++|+.+
T Consensus        70 glil~Gg~~~~~~~~~~---~~~~~~~~~~~PilGIC~G~Qll~~~  112 (218)
T 2vpi_A           70 AIIISGGPNSVYAEDAP---WFDPAIFTIGKPVLGICYGMQMMNKV  112 (218)
T ss_dssp             EEEEEC---------CC---CCCGGGGTSSCCEEEETHHHHHHHHH
T ss_pred             EEEECCCCcccccccch---hHHHHHHHcCCCEEEEcHHHHHHHHH
Confidence            99999997532101111   12234457899999999999999975

>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1

Probab=97.77  E-value=5.8e-05  Score=58.39  Aligned_cols=86  Identities=21%  Similarity=0.264  Sum_probs=55.7

Q ss_pred             CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG   88 (219)
Q Consensus         9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~   88 (219)
                      +||.++-+.+-.   .......|+++|.++.++..+.                               ..+++  .++|.
T Consensus        14 ~~i~~id~~~~~---~~~~~~~l~~~G~~~~vv~~~~-------------------------------~~~~l--~~~Dg   57 (212)
T 2a9v_A           14 LKIYVVDNGGQW---THREWRVLRELGVDTKIVPNDI-------------------------------DSSEL--DGLDG   57 (212)
T ss_dssp             CBEEEEEESCCT---TCHHHHHHHHTTCBCCEEETTS-------------------------------CGGGG--TTCSE
T ss_pred             ceEEEEeCCCcc---HHHHHHHHHHCCCEEEEEeCCC-------------------------------CHHHH--hCCCE
Confidence            477776654322   3456778888898776664321                               12222  24999


Q ss_pred             EEEcCC-CCccc-ccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           89 LVIPGG-RAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        89 liipGG-~~~~~-~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      |||||| .+... ....+.+.+++   .++++|+.+||.|.++|+.+
T Consensus        58 lIl~GG~p~~~~~~~~~~~l~~~~---~~~~~PiLGIC~G~Qll~~~  101 (212)
T 2a9v_A           58 LVLSGGAPNIDEELDKLGSVGKYI---DDHNYPILGICVGAQFIALH  101 (212)
T ss_dssp             EEEEEECSCGGGTGGGHHHHHHHH---HHCCSCEEEETHHHHHHHHH
T ss_pred             EEECCCCCCCCcccccchhHHHHH---HhCCCCEEEEChHHHHHHHH
Confidence            999999 55321 11234444444   47899999999999999976

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=97.66  E-value=5.4e-05  Score=66.87  Aligned_cols=88  Identities=20%  Similarity=0.190  Sum_probs=61.5

Q ss_pred             CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG   88 (219)
Q Consensus         9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~   88 (219)
                      ++|+|+-+.   ...+....+.|+++|.++.++....                             +   ..  ...+|.
T Consensus         5 ~~I~Iid~~---~g~~~~~~~~l~~~G~~~~vv~~~~-----------------------------~---~~--l~~~Dg   47 (555)
T 1jvn_A            5 PVVHVIDVE---SGNLQSLTNAIEHLGYEVQLVKSPK-----------------------------D---FN--ISGTSR   47 (555)
T ss_dssp             CEEEEECCS---CSCCHHHHHHHHHTTCEEEEESSGG-----------------------------G---CC--STTCSC
T ss_pred             CEEEEEECC---CCCHHHHHHHHHHCCCEEEEECCcc-----------------------------c---cc--cccCCE
Confidence            389999764   1234567888999999888764210                             0   11  236999


Q ss_pred             EEEcCCCCccc-c--cCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           89 LVIPGGRAPEY-L--AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        89 liipGG~~~~~-~--~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ||+|||..+.. .  ..+..+.++|+++.++++||.+||.|.++|+.+
T Consensus        48 lILpGgG~~~~~~~~l~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~a   95 (555)
T 1jvn_A           48 LILPGVGNYGHFVDNLFNRGFEKPIREYIESGKPIMGIXVGLQALFAG   95 (555)
T ss_dssp             EEEEECSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEEEHHHHTTEEE
T ss_pred             EEECCCCchHhHhhhhhhccHHHHHHHHHHcCCcEEEEchhhhhhhhh
Confidence            99998533211 1  112236789999999999999999999999986

>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1

Probab=97.61  E-value=7.6e-05  Score=61.29  Aligned_cols=96  Identities=16%  Similarity=0.182  Sum_probs=60.3

Q ss_pred             CEEEEEecCCCCc--------hhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccC
Q 027785            9 RSVLLLCGDYMED--------YEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDE   80 (219)
Q Consensus         9 ~kv~il~~~g~~~--------~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~   80 (219)
                      ..|+|....+...        .-.....+.|+++|..+.++.....+                            ..+.+
T Consensus        31 P~IGI~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~vv~~~~~~----------------------------~~i~~   82 (315)
T 1l9x_A           31 PIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTE----------------------------KDYEI   82 (315)
T ss_dssp             CEEEEECEECCSHHHHTTCSEEEEHHHHHHHHHTTCEEEEECSSCCH----------------------------HHHHH
T ss_pred             CEEEEECCcccccccccCcceehHHHHHHHHHHCCCEEEEEecCCCH----------------------------HHHHH
Confidence            4799987643211        11224678889999988887553210                            01111


Q ss_pred             CCCCCccEEEEcCCCCc-ccc---cCChHHHHHHHHHHhcC--CeEEEEehhHHHHHhC
Q 027785           81 IDPTKYDGLVIPGGRAP-EYL---AMNDSVIDLVRKFSNSG--KTIASICHGQLILAAA  133 (219)
Q Consensus        81 ~~~~~~D~liipGG~~~-~~~---~~~~~l~~~l~~~~~~~--~~v~~ic~G~~~La~a  133 (219)
                      . ...+|.||+|||.+. ...   .....+.++++++.+++  +||.+||.|.++|+.+
T Consensus        83 ~-l~~~dglil~GG~~~v~p~~~~~~~~~l~~~~~~~~~~g~~~PiLGIC~G~Qll~~a  140 (315)
T 1l9x_A           83 L-FKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLL  140 (315)
T ss_dssp             H-HHHSSEEEECCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHHHHHHHH
T ss_pred             H-HhcCCEEEEeCCCcccChhhhhHHHHHHHHHHHHHHhcCCCceEEEEChHHHHHHHH
Confidence            0 136899999999742 110   01135677777776664  9999999999999875

>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}

Probab=97.60  E-value=7.8e-05  Score=65.49  Aligned_cols=89  Identities=16%  Similarity=0.164  Sum_probs=56.6

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      ..||+|+=+.. +  -...+...++++|..++++..+..                               .+++....+|
T Consensus        10 ~~~I~IlD~g~-~--~~~~i~r~lr~~Gv~~~i~p~~~~-------------------------------~~~i~~~~~d   55 (527)
T 3tqi_A           10 QHRILILDFGS-Q--YAQLIARRVREIGVYCELMPCDID-------------------------------EETIRDFNPH   55 (527)
T ss_dssp             CSEEEEEECSC-T--THHHHHHHHHHHTCEEEEEETTCC-------------------------------SSSSTTTCCS
T ss_pred             CCeEEEEECCC-c--cHHHHHHHHHHCCCeEEEEECCCC-------------------------------HHHHHhcCCC
Confidence            46888886532 2  225667888999988888743321                               1122222579


Q ss_pred             EEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        88 ~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      .||+|||++...   ++......+..++.++||.+||.|.++|+.+
T Consensus        56 gIILsGGp~sv~---~~~~~~~~~~~~~~~~PvLGIC~G~Qlla~~   98 (527)
T 3tqi_A           56 GIILSGGPETVT---LSHTLRAPAFIFEIGCPVLGICYGMQTMAYQ   98 (527)
T ss_dssp             EEEECCCCC------------CCCSTTTSSSCEEEETHHHHHHHHH
T ss_pred             EEEECCcCcccc---cCCChhhHHHHHhcCCCEEEEChHHHHHHHH
Confidence            999999976321   1122233455678899999999999999975

>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=97.59  E-value=3.4e-05  Score=59.49  Aligned_cols=98  Identities=16%  Similarity=0.157  Sum_probs=63.0

Q ss_pred             CCEEEEEecCCC--C-chhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCC
Q 027785            8 KRSVLLLCGDYM--E-DYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT   84 (219)
Q Consensus         8 ~~kv~il~~~g~--~-~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~   84 (219)
                      .+||+|+-+-.-  + ..-+......|++.|+++..+.....                          .++...+.+  .
T Consensus        27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~--------------------------~~~~~~~~l--~   78 (206)
T 3l4e_A           27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATE--------------------------SLGEITTKL--R   78 (206)
T ss_dssp             TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTS--------------------------CHHHHHHHH--H
T ss_pred             CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCC--------------------------ChHHHHHHH--H
Confidence            467887764211  1 12345567788888887776643211                          000001112  3


Q ss_pred             CccEEEEcCCCCc--ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           85 KYDGLVIPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        85 ~~D~liipGG~~~--~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      +.|.|++|||...  ........+.+.|++..++|++++++|.|+.+++..
T Consensus        79 ~ad~I~l~GG~~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~sAGa~~l~~~  129 (206)
T 3l4e_A           79 KNDFIYVTGGNTFFLLQELKRTGADKLILEEIAAGKLYIGESAGAVITSPN  129 (206)
T ss_dssp             HSSEEEECCSCHHHHHHHHHHHTHHHHHHHHHHTTCEEEEETHHHHTTSSB
T ss_pred             hCCEEEECCCCHHHHHHHHHHCChHHHHHHHHHcCCeEEEECHHHHHhccc
Confidence            6899999998642  222345668899999999999999999999999853

>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A

Probab=97.56  E-value=7.7e-05  Score=60.52  Aligned_cols=46  Identities=15%  Similarity=0.220  Sum_probs=39.9

Q ss_pred             CccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        85 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ++|.||||||++...   .+.+.++++++.++++||.+||.|.++|+.+
T Consensus        90 ~~dgiil~GG~~~~~---~~~~~~~i~~~~~~~~PilGIC~G~Q~l~~a  135 (289)
T 2v4u_A           90 KADGILVPGGFGIRG---TLGKLQAISWARTKKIPFLGVXLGMQLAVIE  135 (289)
T ss_dssp             HCSEEEECSCCSSTT---HHHHHHHHHHHHHTTCCEEEETHHHHHHHHH
T ss_pred             hCCEEEecCCCCchh---HHHHHHHHHHHHHcCCcEEEECccHHHHHHH
Confidence            689999999987522   2678899999999999999999999999974

>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}

Probab=97.53  E-value=0.00024  Score=62.72  Aligned_cols=91  Identities=16%  Similarity=0.189  Sum_probs=58.9

Q ss_pred             CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG   88 (219)
Q Consensus         9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~   88 (219)
                      .||+|+=+-.   .-...+...|+..|..++++..+.                               +++++....+|.
T Consensus         8 ~~IlilD~Gs---~~~~~I~r~lre~Gv~~eiv~~~~-------------------------------~~~~i~~~~~dg   53 (556)
T 3uow_A            8 DKILVLNFGS---QYFHLIVKRLNNIKIFSETKDYGV-------------------------------ELKDIKDMNIKG   53 (556)
T ss_dssp             CEEEEEESSC---TTHHHHHHHHHHTTCCEEEEETTC-------------------------------CGGGTTTSCEEE
T ss_pred             CEEEEEECCC---ccHHHHHHHHHHCCCeEEEEECCC-------------------------------CHHHHhhcCCCE
Confidence            5787775532   123567788899998888875432                               122332237999


Q ss_pred             EEEcCCCCcccccCChHHH-HHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           89 LVIPGGRAPEYLAMNDSVI-DLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        89 liipGG~~~~~~~~~~~l~-~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ||+|||++.......+.+. .+++.+.++++||.+||.|.++|+.+
T Consensus        54 IIlsGGp~s~~~~~~~~~~~~l~~~a~~~g~PvLGIC~G~QlLa~~   99 (556)
T 3uow_A           54 VILSGGPYSVTEAGSPHLKKEVFEYFLEKKIPIFGICYGMQEIAVQ   99 (556)
T ss_dssp             EEECCCSCCTTSTTCCCCCHHHHHHHHHTTCCEEEETHHHHHHHHH
T ss_pred             EEECCCCCcccccCCcchhHHHHHHhhhcCCCEEEECHHHHHHHHH
Confidence            9999998632211122222 33444566799999999999999975

>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*

Probab=97.47  E-value=0.00071  Score=60.69  Aligned_cols=89  Identities=20%  Similarity=0.293  Sum_probs=61.8

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      .|+|+|+=+-   ..=...+...|+..|.++.++..+..                               .   +..++|
T Consensus       446 Gk~IlviD~g---dsf~~~l~~~l~~~G~~v~Vv~~d~~-------------------------------~---~~~~~D  488 (645)
T 3r75_A          446 GCRALIVDAE---DHFTAMIAQQLSSLGLATEVCGVHDA-------------------------------V---DLARYD  488 (645)
T ss_dssp             TCEEEEEESS---CTHHHHHHHHHHHTTCEEEEEETTCC-------------------------------C---CGGGCS
T ss_pred             CCEEEEEECC---ccHHHHHHHHHHHCCCEEEEEECCCc-------------------------------c---cccCCC
Confidence            4566665432   12235677888899998888754321                               0   123689


Q ss_pred             EEEEcCCCCcccccCC---hHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           88 GLVIPGGRAPEYLAMN---DSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        88 ~liipGG~~~~~~~~~---~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      .|||+||.+.......   ..+.++|+++.+.++||.+||-|.++|+.+
T Consensus       489 gIIlsGGPg~p~d~~~p~i~~~~~lI~~a~~~~iPiLGIClG~QlLa~a  537 (645)
T 3r75_A          489 VVVMGPGPGDPSDAGDPRIARLYAWLRHLIDEGKPFMAVCLSHQILNAI  537 (645)
T ss_dssp             EEEECCCSSCTTCTTSHHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHH
T ss_pred             EEEECCCCCChhhhhhhhHHHHHHHHHHHHHCCCCEEEECHHHHHHHHH
Confidence            9999999874321222   246788999999999999999999999975

>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}

Probab=97.46  E-value=0.00066  Score=55.45  Aligned_cols=56  Identities=18%  Similarity=0.288  Sum_probs=42.4

Q ss_pred             CccCCCCCCccEEEEcCCCC-c---ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHh
Q 027785           77 TFDEIDPTKYDGLVIPGGRA-P---EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA  132 (219)
Q Consensus        77 ~~~~~~~~~~D~liipGG~~-~---~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~  132 (219)
                      ++++++...||.+||.|++- .   +....-+++.++++...++++++.+||-|+++++.
T Consensus       103 ~f~~~~~~~~DglIITGsP~~~~~~ed~~yw~el~~li~~~~~~~~p~LGIC~GaQ~~l~  162 (312)
T 2h2w_A          103 TFSAVKDRKFDGFIITGAPVELLPFEEVDYWEELTEIMEWSRHNVYSTMFICWAAQAGLY  162 (312)
T ss_dssp             CGGGTTTCCEEEEEECCCSCTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHH
T ss_pred             CcccccccCcCEEEECCCCCCCCCCccCchHHHHHHHHHHHHHcCCcEEEECHHHHHHHH
Confidence            35555556899999999973 2   11223367888888888999999999999998444

>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A

Probab=97.45  E-value=4e-05  Score=60.08  Aligned_cols=50  Identities=10%  Similarity=0.092  Sum_probs=39.5

Q ss_pred             CccEEEEcCCCCc--ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCc
Q 027785           85 KYDGLVIPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD  134 (219)
Q Consensus        85 ~~D~liipGG~~~--~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aG  134 (219)
                      +.|.|++|||...  ........+.+.|+++.++|++++++|.|+.+|+...
T Consensus        79 ~ad~I~lpGG~~~~~~~~l~~~gl~~~l~~~~~~G~p~~G~sAG~~~l~~~~  130 (229)
T 1fy2_A           79 KAEIIIVGGGNTFQLLKESRERGLLAPMADRVKRGALYIGWSAGANLACPTI  130 (229)
T ss_dssp             HCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHHTSSBS
T ss_pred             cCCEEEECCCcHHHHHHHHHHCChHHHHHHHHHcCCEEEEECHHHHhhcccc
Confidence            5899999998642  2222334688899999999999999999999998753

>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A

Probab=97.30  E-value=0.00044  Score=56.26  Aligned_cols=55  Identities=22%  Similarity=0.376  Sum_probs=41.1

Q ss_pred             ccCCCCCCccEEEEcCCCC-c---ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHh
Q 027785           78 FDEIDPTKYDGLVIPGGRA-P---EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA  132 (219)
Q Consensus        78 ~~~~~~~~~D~liipGG~~-~---~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~  132 (219)
                      +++++...||.+||.|++- .   +....-+.+.++++...++++++.+||-|+++++.
T Consensus        92 f~~~~~~~~DglIITGap~~~~~~ed~~yw~el~~li~~~~~~~~~~lgIC~GaQ~~l~  150 (301)
T 2vdj_A           92 FRDIENEKFDGLIITGAPVETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLY  150 (301)
T ss_dssp             HHHHTTSCEEEEEECCCTTTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHH
T ss_pred             cccccccccCEEEECCCCCcCCCcccCchHHHHHHHHHHHHHcCCcEEEEcHHHHHHHH
Confidence            4444446899999999973 2   11223367888888888999999999999998443

>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}

Probab=97.28  E-value=0.00026  Score=56.89  Aligned_cols=45  Identities=16%  Similarity=0.198  Sum_probs=38.3

Q ss_pred             CccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHh
Q 027785           85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA  132 (219)
Q Consensus        85 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~  132 (219)
                      .+|.|++|||++..   ..+...++++++.++++||.+||.|.++|+.
T Consensus        67 ~~dgiil~GG~~~~---~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~  111 (273)
T 2w7t_A           67 GCDGIFVPGGFGNR---GVDGKCAAAQVARMNNIPYFGVXLGMQVAVI  111 (273)
T ss_dssp             TCSEEEECCCCTTT---THHHHHHHHHHHHHHTCCEEEETHHHHHHHH
T ss_pred             hCCEEEecCCCCCc---CchhHHHHHHHHHHCCCcEEEECcCHHHHHH
Confidence            68999999997652   2345778999999999999999999999986

>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1

Probab=97.05  E-value=0.00039  Score=61.03  Aligned_cols=89  Identities=15%  Similarity=0.204  Sum_probs=56.9

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      .++|+|+=+.+-.   ...+...++.+|..+.++..+..                            ...+.+.   .+|
T Consensus         7 ~~~IlIlD~g~~~---~~~i~r~lr~~G~~~~i~p~~~~----------------------------~~~i~~~---~~d   52 (525)
T 1gpm_A            7 KHRILILDFGSQY---TQLVARRVRELGVYCELWAWDVT----------------------------EAQIRDF---NPS   52 (525)
T ss_dssp             SSEEEEEECSCTT---HHHHHHHHHHTTCEEEEEESCCC----------------------------HHHHHHH---CCS
T ss_pred             CCEEEEEECCCcc---HHHHHHHHHHCCCEEEEEECCCC----------------------------HHHHhcc---CCC
Confidence            4688888654322   24567889999988887744321                            0112221   479


Q ss_pred             EEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        88 ~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      .||+|||++.......+.+   .+...+.++||.+||.|.++|+.+
T Consensus        53 giILsGGp~s~~~~~~~~~---~~~~~~~g~PvLGIC~G~Qlla~~   95 (525)
T 1gpm_A           53 GIILSGGPESTTEENSPRA---PQYVFEAGVPVFGVCYGMQTMAMQ   95 (525)
T ss_dssp             EEEECCCSSCTTSTTCCCC---CGGGGTSSSCEEEETHHHHHHHHH
T ss_pred             EEEECCcCccccccCCcch---HHHHHHCCCCEEEEChHHHHHHHH
Confidence            9999999753211111212   244557899999999999999975

>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*

Probab=97.04  E-value=0.0012  Score=49.98  Aligned_cols=91  Identities=16%  Similarity=0.092  Sum_probs=52.5

Q ss_pred             EEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEE
Q 027785           10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGL   89 (219)
Q Consensus        10 kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l   89 (219)
                      ||+|+=..+.   =-......|++.|.++.++......                      ..+  ...+..   .+.|.+
T Consensus         2 ~i~iiDn~~s---~~~~i~~~l~~~G~~~~v~~~~~~~----------------------~~i--~~~l~~---~~~~~i   51 (192)
T 1i1q_B            2 DILLLDNIDS---FTWNLADQLRTNGHNVVIYRNHIPA----------------------QTL--IDRLAT---MKNPVL   51 (192)
T ss_dssp             EEEEEECSCS---SHHHHHHHHHHTTCEEEEEETTSCS----------------------HHH--HHHHTT---CSSEEE
T ss_pred             cEEEEECCcc---HHHHHHHHHHHCCCeEEEEECCCCH----------------------HHH--HHHhhh---ccCCeE
Confidence            6777662221   1245578888999988887554210                      000  001111   124447


Q ss_pred             EEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           90 VIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        90 iipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      |+.||.+...  .......+++ ..++++||.+||.|.++|+.+
T Consensus        52 il~gGpg~~~--~~~~~~~l~~-~~~~~~PilGIC~G~Qll~~~   92 (192)
T 1i1q_B           52 MLSPGPGVPS--EAGCMPELLT-RLRGKLPIIGICLGHQAIVEA   92 (192)
T ss_dssp             EECCCSSCGG--GSTTHHHHHH-HHBTTBCEEEETHHHHHHHHH
T ss_pred             EECCCCcCch--hCchHHHHHH-HHhcCCCEEEECcChHHHHHH
Confidence            7777776421  1222334444 467899999999999999986

>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}

Probab=96.84  E-value=0.0014  Score=56.87  Aligned_cols=48  Identities=13%  Similarity=0.239  Sum_probs=41.0

Q ss_pred             CCCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           83 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        83 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ...+|.|++|||++..   ..+...++|+.+.++++|+.+||.|.++|+.+
T Consensus       348 L~~~DgIIlpGG~G~~---~~~g~i~~ir~a~~~~~PiLGIClG~Qll~va  395 (535)
T 3nva_A          348 LGNVNGIIVLPGFGSR---GAEGKIKAIKYAREHNIPFLGICFGFQLSIVE  395 (535)
T ss_dssp             TTSCSEEEECCCCSST---THHHHHHHHHHHHHHTCCEEEETHHHHHHHHH
T ss_pred             ccCCCEEEECCCCCCc---cHHHHHHHHHHHHHcCCcEEEECcchhHHHHH
Confidence            3589999999998753   34678899999999999999999999988865

>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*

Probab=96.54  E-value=0.0032  Score=55.21  Aligned_cols=47  Identities=19%  Similarity=0.309  Sum_probs=39.7

Q ss_pred             CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ..+|.|++|||++...   .+...++++++.++++|+.+||.|.++|+.+
T Consensus       342 ~~~DGIilsGGpg~~~---~~g~~~~i~~a~~~~~PiLGIClG~Qll~va  388 (545)
T 1s1m_A          342 KGLDAILVPGGFGYRG---VEGMITTARFARENNIPYLGICLGMQVALID  388 (545)
T ss_dssp             TTCSEEEECCCCSSTT---HHHHHHHHHHHHHTTCCEEEETHHHHHHHHH
T ss_pred             hcCCEEEECCCCCCcc---chhhHHHHHHHHHCCCcEEEECChHHHHHHH
Confidence            4799999999987532   3567889999999999999999999999864

>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A

Probab=96.51  E-value=0.0028  Score=55.65  Aligned_cols=47  Identities=17%  Similarity=0.279  Sum_probs=39.4

Q ss_pred             CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ..+|.|++|||+|...   .+..+..++.+.++++|+.+||-|.++|+.+
T Consensus       354 ~~~DGIILpGGfGd~~---~~g~i~~ir~a~e~~iPiLGICLGmQlL~~a  400 (550)
T 1vco_A          354 RDVSGILVPGGFGVRG---IEGKVRAAQYARERKIPYLGICLGLQIAVIE  400 (550)
T ss_dssp             TTCSCEEECCCCSSTT---HHHHHHHHHHHHHTTCCEEEETHHHHHHHHH
T ss_pred             hcCCEEEECCCCCCcc---hhhhHHHHHHHHHCCCcEEEECcCHHHHHHH
Confidence            4799999999987432   2456788999988999999999999999876

>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*

Probab=96.34  E-value=0.0024  Score=55.68  Aligned_cols=75  Identities=15%  Similarity=0.120  Sum_probs=48.8

Q ss_pred             HHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCcccccCCh
Q 027785           25 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMND  104 (219)
Q Consensus        25 ~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~~~~~  104 (219)
                      ..+...++++|..+.++..+..                            ...+.+.   .+|.||+|||++...-...+
T Consensus        13 ~~i~r~l~~~G~~~~i~p~~~~----------------------------~~~i~~~---~~dgiIlsGGp~s~~~~~~~   61 (503)
T 2ywb_A           13 RLIARRLRELRAFSLILPGDAP----------------------------LEEVLKH---RPQALILSGGPRSVFDPDAP   61 (503)
T ss_dssp             HHHHHHHHTTTCCEEEEETTCC----------------------------HHHHHTT---CCSEEEECCCSSCSSCTTCC
T ss_pred             HHHHHHHHHCCCEEEEEECCCC----------------------------HHHHHhc---CCCEEEECCCCchhccCCCc
Confidence            5678889999988777643311                            0112222   47999999997632111111


Q ss_pred             HHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785          105 SVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus       105 ~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      .+   .+...+.++||.+||.|.++|+.+
T Consensus        62 ~~---~~~~~~~~~PvLGIC~G~Qlla~~   87 (503)
T 2ywb_A           62 RP---DPRLFSSGLPLLGICYGMQLLAQE   87 (503)
T ss_dssp             CC---CGGGGCSSCCEEEETHHHHHHHHT
T ss_pred             ch---HHHHHhCCCCEEEECHHHHHHHHH
Confidence            11   134457899999999999999986

>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}

Probab=95.97  E-value=0.0019  Score=58.39  Aligned_cols=89  Identities=16%  Similarity=0.150  Sum_probs=53.5

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      ..+|+|+-+.+-. .+  .+...+++.|..+.++..+..                               .+++...++|
T Consensus        29 ~~~I~VLDfg~q~-~~--liar~lre~Gv~~~ivp~~~~-------------------------------~e~i~~~~~d   74 (697)
T 2vxo_A           29 EGAVVILDAGAQY-GK--VIDRRVRELFVQSEIFPLETP-------------------------------AFAIKEQGFR   74 (697)
T ss_dssp             CCCEEEEEEC--C-HH--HHHHHHHHTTCCEEEEETTCC-------------------------------HHHHHHHTCS
T ss_pred             CCEEEEEECCCch-HH--HHHHHHHHCCCEEEEEECCCC-------------------------------HHHHhhcCCC
Confidence            3578888765422 12  355788899988887754321                               1111113689


Q ss_pred             EEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        88 ~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      .||++||++...-...+.+   .++..+.++||.+||.|.++|+.+
T Consensus        75 GIILsGGp~s~~~~~~~~~---~~~i~~~g~PvLGIC~G~QlLa~~  117 (697)
T 2vxo_A           75 AIIISGGPNSVYAEDAPWF---DPAIFTIGKPVLGICYGMQMMNKV  117 (697)
T ss_dssp             EEEEEECC-------CCCC---CGGGTTSSCCEEEEEHHHHHHHHH
T ss_pred             EEEECCCCCcccCccchhH---HHHHHhCCCCEEEECHHHHHHHHH
Confidence            9999999863211111111   133457899999999999999985

>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}

Probab=95.63  E-value=0.0074  Score=48.77  Aligned_cols=48  Identities=19%  Similarity=0.416  Sum_probs=39.6

Q ss_pred             CccEEEEcCCCCcc--cccCChHHHHHHHHHHhcC-CeEEEEehhHHHHHh
Q 027785           85 KYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSG-KTIASICHGQLILAA  132 (219)
Q Consensus        85 ~~D~liipGG~~~~--~~~~~~~l~~~l~~~~~~~-~~v~~ic~G~~~La~  132 (219)
                      +.|+|+|+||....  .......+.+.|++.+++| .++++.|+|+.+++.
T Consensus       110 ~ad~I~v~GGnt~~l~~~l~~t~l~~~L~~~~~~G~~~~~GtSAGA~i~~~  160 (291)
T 3en0_A          110 QCTGIFMTGGDQLRLCGLLADTPLMDRIRQRVHNGEISLAGTSAGAAVMGH  160 (291)
T ss_dssp             HCSEEEECCSCHHHHHHHHTTCHHHHHHHHHHHTTSSEEEEETHHHHTTSS
T ss_pred             cCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCeEEEEeCHHHHhhhH
Confidence            68999999997532  2345678999999999999 899999999998754

>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}

Probab=91.24  E-value=0.96  Score=35.70  Aligned_cols=83  Identities=13%  Similarity=0.029  Sum_probs=53.5

Q ss_pred             CCEEEEEecCCCC-chhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCc
Q 027785            8 KRSVLLLCGDYME-DYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKY   86 (219)
Q Consensus         8 ~~kv~il~~~g~~-~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~   86 (219)
                      ++||+|+-  |.. ..+...+.+.|+..|++|++++.+.-+                            .+..+  ..+|
T Consensus         4 m~~vLiV~--g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~----------------------------~~~~~--L~~y   51 (259)
T 3rht_A            4 MTRVLYCG--DTSLETAAGYLAGLMTSWQWEFDYIPSHVGL----------------------------DVGEL--LAKQ   51 (259)
T ss_dssp             --CEEEEE--SSCTTTTHHHHHHHHHHTTCCCEEECTTSCB----------------------------CSSHH--HHTC
T ss_pred             CceEEEEC--CCCchhHHHHHHHHHHhCCceEEEecccccc----------------------------cChhH--HhcC
Confidence            35898883  332 345566778999999999998775321                            01122  2489


Q ss_pred             cEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEeh
Q 027785           87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH  125 (219)
Q Consensus        87 D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~  125 (219)
                      |+||++-- ...  .-.+...+.|+++.++|.-++.+..
T Consensus        52 DvIIl~d~-~~~--~l~~~~~~~L~~yV~~GGgLi~~gG   87 (259)
T 3rht_A           52 DLVILSDY-PAE--RMTAQAIDQLVTMVKAGCGLVMLGG   87 (259)
T ss_dssp             SEEEEESC-CGG--GBCHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CEEEEcCC-ccc--cCCHHHHHHHHHHHHhCCeEEEecC
Confidence            99999742 221  2356777788888888887776644

>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel, glycosyltransferase, transferase; HET: NDG; 1.85A {Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A* 2zuw_A*

Probab=88.09  E-value=2.1  Score=38.39  Aligned_cols=89  Identities=12%  Similarity=0.057  Sum_probs=62.5

Q ss_pred             CCEEEEEecCC------CCch----------hhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCc
Q 027785            8 KRSVLLLCGDY------MEDY----------EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHN   71 (219)
Q Consensus         8 ~~kv~il~~~g------~~~~----------e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   71 (219)
                      +.|||||-..|      ....          ...++++.|..++++|++++-+.                          
T Consensus       438 ~~kVAVLnsWGklRSW~~~~vaHak~~kq~ysy~GilEALsg~~~dV~FIsfdD--------------------------  491 (759)
T 2zuv_A          438 ELNVAILNSWGKMRSWMAFTVAHALPNKQTYSYYGILESLSGMRVNVRFISFDD--------------------------  491 (759)
T ss_dssp             CSEEEEEESSGGGGTTTTTCSSTTCCCTTTHHHHHHHHHHHTSSSEEEEEEHHH--------------------------
T ss_pred             CceEEEEecCCCCcccccccccccccccccccHHHHHHHHhcCCCceEEecHHH--------------------------
Confidence            47999998642      1122          55779999999999999997642                          


Q ss_pred             cccccCccCCCCCCccEEEEcCCCC----cccccCChHHHHHHHHHHhcCCeEEEEehhH
Q 027785           72 FALNATFDEIDPTKYDGLVIPGGRA----PEYLAMNDSVIDLVRKFSNSGKTIASICHGQ  127 (219)
Q Consensus        72 i~~~~~~~~~~~~~~D~liipGG~~----~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~  127 (219)
                      +...    + .+.+||+||-+|-.+    ......++.....||++..+|.-+.+++.=+
T Consensus       492 I~e~----e-~L~d~DVIIn~G~A~TalSgg~~W~~p~~~~aLR~fV~~GGgLIgVGepS  546 (759)
T 2zuv_A          492 VLAH----G-IDSDIDVIINGGPVDTAFTGGDVWTNPKLVETVRAWVRGGGAFVGVGEPS  546 (759)
T ss_dssp             HHHH----C-CCTTCCEEEEEECTTSTTTCGGGGGCHHHHHHHHHHHHTTCEEEEEESTT
T ss_pred             hccc----c-ccccCCEEEecCcchhcccCccccCCHHHHHHHHHHHHcCCcEEEeCCcc
Confidence            1001    1 135899999988221    1122446999999999999999888887644

>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}

Probab=86.55  E-value=11  Score=29.97  Aligned_cols=91  Identities=16%  Similarity=0.176  Sum_probs=53.4

Q ss_pred             CCEEEEEecCCCCchh--hHHHHHHHHhCC-CeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCC
Q 027785            8 KRSVLLLCGDYMEDYE--AMVPFQALLAFG-VSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPT   84 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e--~~~~~~~l~~ag-~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~   84 (219)
                      +.||+|+.-...-..+  ...+.+.|++.| |+|++......+.+                         ...|.. +..
T Consensus         4 ~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d-------------------------~~~f~~-~L~   57 (281)
T 4e5v_A            4 PIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKD-------------------------MSGFVL-DFS   57 (281)
T ss_dssp             CEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSC-------------------------CTTCCC-CCT
T ss_pred             ceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccc-------------------------hhHHhh-hhh
Confidence            4678887543322111  134455666677 99988754321000                         011221 345


Q ss_pred             CccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHH
Q 027785           85 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL  128 (219)
Q Consensus        85 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~  128 (219)
                      +||+||+-- .+.   .-.+...+-|+++.++|..++++.+++.
T Consensus        58 ~~D~vV~~~-~~~---~l~~~~~~~l~~yV~~Ggglv~~H~a~~   97 (281)
T 4e5v_A           58 PYQLVVLDY-NGD---SWPEETNRRFLEYVQNGGGVVIYHAADN   97 (281)
T ss_dssp             TCSEEEECC-CSS---CCCHHHHHHHHHHHHTTCEEEEEGGGGG
T ss_pred             cCCEEEEeC-CCC---cCCHHHHHHHHHHHHcCCCEEEEecccc
Confidence            899999633 221   1356777788888889999999988653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	219
d1vhqa_	217	c.23.16.2 (A:) Putative sigma cross-reacting prote	7e-34
d1oi4a1	170	c.23.16.2 (A:23-192) Hypothetical protein YhbO {Es	7e-32
d1g2ia_	166	c.23.16.2 (A:) Intracellular protease {Archaeon Py	6e-30
d1qvwa_	236	c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Bake	3e-27
d1u9ca_	221	c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothe	4e-23
d1n57a_	279	c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia col	2e-21
d2fexa1	188	c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {	2e-19
d1sy7a1	184	c.23.16.3 (A:553-736) Catalase, C-terminal domain	5e-19
d1p80a1	156	c.23.16.3 (A:598-753) Catalase, C-terminal domain	8e-18
d2ab0a1	195	c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherich	4e-17
d1p5fa_	186	c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId:	6e-17

>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)
species: Escherichia coli [TaxId: 562]

 Score =  118 bits (297), Expect = 7e-34
 Identities = 34/192 (17%), Positives = 58/192 (30%), Gaps = 19/192 (9%)

Query: 8   KRSVLLLCG----DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQT 63
           K+  ++L G    D  E +EA++   A+   G       P K+  DV      ++     
Sbjct: 2   KKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETR 61

Query: 64  YSETRGHNFALNA--TFDEIDPTKYDGLVIPGGRAP-----------EYLAMNDSVIDLV 110
                             + D  + D L++PGG                  ++  +  L 
Sbjct: 62  NVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALA 121

Query: 111 RKFSNSGKTIASICHGQLILAAADVVKGR-KCTAYPPVKPVLIAAGASWIEPETMAACVV 169
           +    +GK +  +C    +L        R           VL   GA  +        V 
Sbjct: 122 QAMHQAGKPLGFMCIAPAMLPKIFDFPLRLTIGTDIDTAEVLEEMGAEHVPCPVDDIVVD 181

Query: 170 -DGNIITGATYE 180
            D  I+T   Y 
Sbjct: 182 EDNKIVTTPAYM 193

>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein YhbO
species: Escherichia coli [TaxId: 562]

 Score =  112 bits (280), Expect = 7e-32
 Identities = 53/186 (28%), Positives = 85/186 (45%), Gaps = 17/186 (9%)

Query: 9   RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR 68
           + + +L  D  ED E   P       G  V                     G     +  
Sbjct: 2   KKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQA--------------GKTVKGKKG 47

Query: 69  GHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128
             +  ++ + DE+ P ++D L++PGG +P+YL  ++  +   R F NSGK + +ICHG  
Sbjct: 48  EASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQ 107

Query: 129 ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRL 188
           +L +ADV++GRK TA  P+   +  AGA + + E     V    ++T  T +  P F R 
Sbjct: 108 LLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQE---VVVDKDQLVTSRTPDDLPAFNRE 164

Query: 189 FLKALG 194
            L+ LG
Sbjct: 165 ALRLLG 170

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  106 bits (266), Expect = 6e-30
 Identities = 63/183 (34%), Positives = 98/183 (53%), Gaps = 20/183 (10%)

Query: 11  VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGH 70
           VL L  +  ED E + P+  L   G  V  A   +                 T +   G+
Sbjct: 3   VLFLTANEFEDVELIYPYHRLKEEGHEVYIASFER----------------GTITGKHGY 46

Query: 71  NFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL 130
           +  ++ TFD+++P ++D LV+PGGRAPE + +N+  + + RK  + GK +ASICHG  IL
Sbjct: 47  SVKVDLTFDKVNPEEFDALVLPGGRAPERVRLNEKAVSIARKMFSEGKPVASICHGPQIL 106

Query: 131 AAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFL 190
            +A V++GRK T+YP +K  +I AG  W++    A  VVDGN ++         ++R F+
Sbjct: 107 ISAGVLRGRKGTSYPGIKDDMINAGVEWVD----AEVVVDGNWVSSRVPADLYAWMREFV 162

Query: 191 KAL 193
           K L
Sbjct: 163 KLL 165

>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 236

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Ydr533Cp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  101 bits (253), Expect = 3e-27
 Identities = 38/230 (16%), Positives = 70/230 (30%), Gaps = 47/230 (20%)

Query: 11  VLLLCGDYMEDY------------EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQS 58
           VLL    Y + +            EA+ PF      G  VD      K G    +     
Sbjct: 5   VLLALTSYNDVFYSDGMKTGVFVVEALHPFNTFRKEGFEVDFVSETGKFGWDEHSLAKDF 64

Query: 59  TGHQTYSETRGHNFALNATF------DEIDPTKYDGLVIPGGRAPEY-LAMNDSVIDLVR 111
              Q  ++ +  +   N T        E++   Y   +   G    +       + D+  
Sbjct: 65  LNGQDETDFKNKDSDFNKTLAKIKTPKEVNADDYQIFMASAGHGTLFDYPKAKDLQDIAS 124

Query: 112 KFSNSGKTIASICHGQLILAAA-------DVVKGRKCTAYP------------------- 145
           +   +G  +A++CHG  +            +++G+  T +                    
Sbjct: 125 EIYANGGVVAAVCHGPAMFDGLTDKKTGRPLIEGKSITGFTDVGETIMGVDSILKAKNLA 184

Query: 146 PVKPVLIAAGASWIEPETMAAC--VVDGNIITGATYEGHPEFIRLFLKAL 193
            V+ V    GA ++ P        + DG ++TG             + AL
Sbjct: 185 TVEDVAKKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAHSTAVRSIDAL 234

>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]} Length = 221

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: GK2698 ortholog
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 90.7 bits (224), Expect = 4e-23
 Identities = 40/196 (20%), Positives = 75/196 (38%), Gaps = 26/196 (13%)

Query: 23  EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEID 82
           E  VP+      G  V  A    + G+V       +    +++E         A   + D
Sbjct: 27  EFAVPYLVFQEKGYDVKVASI--QGGEVPLDPRSINEKDPSWAEAEAA-LKHTARLSKDD 83

Query: 83  PTKYDGLVIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAA------ADV 135
              +D + +PGG    +    N+++  ++++F+  G+ IA++CHG   L          +
Sbjct: 84  AHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNATYKDGTPI 143

Query: 136 VKGRKCTAYP---------------PVKPVLIAAGASWIEPETMAA-CVVDGNIITGATY 179
           VKG+  T++                 ++  L   GA+++         V DGN+ITG   
Sbjct: 144 VKGKTVTSFTDEEEREVGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLITGQNP 203

Query: 180 EGHPEFIRLFLKALGG 195
           +         + AL  
Sbjct: 204 QSSRSTAEKVVAALEE 219

>d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]} Length = 279

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: HSP31 (HchA; YedU)
species: Escherichia coli [TaxId: 562]

 Score = 87.1 bits (215), Expect = 2e-21
 Identities = 31/201 (15%), Positives = 59/201 (29%), Gaps = 30/201 (14%)

Query: 23  EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAV-HQSTGHQTYSETRGHNFAL-----NA 76
           E ++P   L A G   + A            A+ H+      + E     F       + 
Sbjct: 73  ETLLPLYHLHAAGFEFEVATISGLMTKFEYWAMPHKDEKVMPFFEQHKSLFRNPKKLADV 132

Query: 77  TFDEIDPTKYDGLVIPGGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD- 134
                  ++Y  + +PGG      L  +  V   ++    + + + S+CHG     A   
Sbjct: 133 VASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALRH 192

Query: 135 ---VVKGRKCTAYPP-------------------VKPVLIAAGASWIEPETMAACVVDGN 172
               + G    A+P                        L   G + I  +       D  
Sbjct: 193 GDNPLNGYSICAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRK 252

Query: 173 IITGATYEGHPEFIRLFLKAL 193
           ++TG +        +L  + +
Sbjct: 253 LLTGDSPFAANALGKLAAQEM 273

>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]} Length = 188

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Atu0886
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 80.1 bits (197), Expect = 2e-19
 Identities = 40/186 (21%), Positives = 61/186 (32%), Gaps = 19/186 (10%)

Query: 11  VLLLCGDYMEDYEAMVPFQALL-AFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRG 69
           + +       D+E  +   A     GV +  A P           V    G +       
Sbjct: 4   IAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGM-------PVTSMGGLK------- 49

Query: 70  HNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI 129
                + ++D +DP   D LVIPGG + E       +  LV++F +  + +A IC     
Sbjct: 50  --VTPDTSYDALDPVDIDALVIPGGLSWEK-GTAADLGGLVKRFRDRDRLVAGICAAASA 106

Query: 130 LAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLF 189
           L    V+     T           A             V DG ++T A       F    
Sbjct: 107 LGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAGS-APVSFAVEI 165

Query: 190 LKALGG 195
           LK+LG 
Sbjct: 166 LKSLGL 171

>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]} Length = 184

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Neurospora crassa [TaxId: 5141]

 Score = 78.8 bits (193), Expect = 5e-19
 Identities = 23/178 (12%), Positives = 46/178 (25%), Gaps = 19/178 (10%)

Query: 9   RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR 68
           R V ++  D  ++      + A+ A         P                  +  +   
Sbjct: 4   RRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGP---------------RRSKVTAANG 48

Query: 69  GHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128
                 +              +  G +A E L+ N   +  +R+     K I +      
Sbjct: 49  STVQPHHHLEGFRSTMVDAIFIPGGAKAAETLSKNGRALHWIREAFGHLKAIGATGEAVD 108

Query: 129 ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFI 186
           ++A A  +     ++   V           ++PE       D   I         EF 
Sbjct: 109 LVAKAIALPQVTVSSEAEVHESYGVVTLKKVKPE----SFTDAVKIAKGAAGFLGEFF 162

>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Escherichia coli, HPII [TaxId: 562]

 Score = 75.1 bits (184), Expect = 8e-18
 Identities = 22/132 (16%), Positives = 39/132 (29%), Gaps = 17/132 (12%)

Query: 9   RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR 68
           R V +L  D +   + +   +AL A GV                            +   
Sbjct: 4   RVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSR----------------MGEVTADD 47

Query: 69  GHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 128
           G    + ATF        D +++P G   + +A N      + +     K IA     + 
Sbjct: 48  GTVLPIAATFAGAPSLTVDAVIVPCGNIAD-IADNGDANYYLMEAYKHLKPIALAGDARK 106

Query: 129 ILAAADVVKGRK 140
             A   +    +
Sbjct: 107 FKATIKIADQGE 118

>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]} Length = 195

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Protein ThiJ (YajL)
species: Escherichia coli [TaxId: 562]

 Score = 74.0 bits (181), Expect = 4e-17
 Identities = 39/190 (20%), Positives = 68/190 (35%), Gaps = 23/190 (12%)

Query: 10  SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRG 69
           S L+      E+ EA+     L+  G+ V  A            +             RG
Sbjct: 3   SALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCS-------------RG 49

Query: 70  HNFALNATFDEIDPTKYDGLVIPGGRAP-EYLAMNDSVIDLVRKFSNSGKTIASICH-GQ 127
                +A   E+   +YD +V+PGG    E    +  +++ V++F  SG+ +A+IC    
Sbjct: 50  VKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPA 109

Query: 128 LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGN--IITGATYEGHPEF 185
            +L   D+      T +P +K  + A              V D    ++T        +F
Sbjct: 110 TVLVPHDIFPIGNMTGFPTLKDKIPAEQWLD------KRVVWDARVKLLTSQGPGTAIDF 163

Query: 186 IRLFLKALGG 195
               +  L G
Sbjct: 164 GLKIIDLLVG 173

>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: DJ-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.4 bits (179), Expect = 6e-17
 Identities = 40/189 (21%), Positives = 74/189 (39%), Gaps = 20/189 (10%)

Query: 9   RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR 68
           +  L++     E+ E ++P   +   G+ V  A                  G      +R
Sbjct: 2   KRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGL---------------AGKDPVQCSR 46

Query: 69  GHNFALNATFDEIDPTK-YDGLVIPGGRAP-EYLAMNDSVIDLVRKFSNSGKTIASICHG 126
                 +A+ ++      YD +V+PGG    + L+ + +V +++++  N    IA+IC G
Sbjct: 47  DVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAG 106

Query: 127 QLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFI 186
              L A ++  G K T +P  K  ++          +      DG I+T        EF 
Sbjct: 107 PTALLAHEIGFGSKVTTHPLAKDKMMNG---GHYTYSENRVEKDGLILTSRGPGTSFEFA 163

Query: 187 RLFLKALGG 195
              ++AL G
Sbjct: 164 LAIVEALNG 172

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	219
d1g2ia_	166	Intracellular protease {Archaeon Pyrococcus horiko	100.0
d1p5fa_	186	DJ-1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1oi4a1	170	Hypothetical protein YhbO {Escherichia coli [TaxId	100.0
d2ab0a1	195	Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]	100.0
d2fexa1	188	Hypothetical protein Atu0886 {Agrobacterium tumefa	100.0
d1u9ca_	221	GK2698 ortholog {Bacillus stearothermophilus [TaxI	100.0
d1sy7a1	184	Catalase, C-terminal domain {Neurospora crassa [Ta	100.0
d1qvwa_	236	Hypothetical protein Ydr533Cp {Baker's yeast (Sacc	99.98
d1n57a_	279	HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}	99.97
d1vhqa_	217	Putative sigma cross-reacting protein 27A (SCRP-27	99.95
d1p80a1	156	Catalase, C-terminal domain {Escherichia coli, HPI	99.92
d1q7ra_	202	Hypothetical protein YaaE {Bacillus stearothermoph	98.9
d2nv0a1	195	Hypothetical protein YaaE {Bacillus subtilis [TaxI	98.8
d1t3ta2	262	FGAM synthase PurL, amidotransferase domain {Salmo	98.77
d1o1ya_	230	Hypothetical protein TM1158 {Thermotoga maritima [	98.67
d1jvna2	232	GAT subunit, HisH, (or domain) of imidazoleglycero	98.16
d2a9va1	196	GMP synthase subunit A, GuaAA {Archaeon Thermoplas	98.04
d2abwa1	218	Pyridoxine biosynthesis protein 2, Pdx2 {Malaria p	98.0
d1k9vf_	200	GAT subunit, HisH, (or domain) of imidazoleglycero	97.99
d1a9xb2	228	Carbamoyl phosphate synthetase, small subunit C-te	97.73
d1wl8a1	188	GMP synthase subunit A, GuaAA {Archaeon Pyrococcus	97.72
d1ka9h_	195	GAT subunit, HisH, (or domain) of imidazoleglycero	97.58
d1qdlb_	195	Anthranilate synthase GAT subunit, TrpG {Archaeon	97.57
d2ghra1	281	Homoserine O-succinyltransferase HTS (MetA) {Bacil	97.52
d1i7qb_	192	Anthranilate synthase GAT subunit, TrpG {Serratia	97.51
d1gpma2	205	GMP synthetase {Escherichia coli [TaxId: 562]}	97.37
d1s1ma1	258	CTP synthase PyrG, C-terminal domain {Escherichia	96.52
d1vcoa1	250	CTP synthase PyrG, C-terminal domain {Thermus ther	95.93
d1l9xa_	288	gamma-glutamyl hydrolase {Human (Homo sapiens) [Ta	95.27
d1fyea_	229	Aspartyl dipeptidase PepE {Salmonella typhimurium	92.27
d1iowa1	96	D-Ala-D-Ala ligase, N-domain {Escherichia coli, ge	88.33
d1t0ba_	240	GK2113 homologue {Bacillus stearothermophilus [Tax	87.43
d1kwga3	197	A4 beta-galactosidase middle domain {Thermus therm	85.22
d1u0ta_	302	Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycob	83.28

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=5.2e-42  Score=258.30  Aligned_cols=165  Identities=38%  Similarity=0.680  Sum_probs=155.9

Q ss_pred             CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG   88 (219)
Q Consensus         9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~   88 (219)
                      +||+|+++|||++.|+..|+++|+++|++++++|++++                ++.++.|..+.+|.+++++++.+||+
T Consensus         1 mKv~il~~dgf~~~E~~~p~~~l~~ag~~v~~vs~~~~----------------~V~~~~g~~i~~d~~~~~~~~~~~d~   64 (166)
T d1g2ia_           1 MKVLFLTANEFEDVELIYPYHRLKEEGHEVYIASFERG----------------TITGKHGYSVKVDLTFDKVNPEEFDA   64 (166)
T ss_dssp             CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSE----------------EEECTTSCEEEECEEGGGCCGGGCSE
T ss_pred             CEEEEEeCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCc----------------eEeecCCcEEeccccHHHcCcccccE
Confidence            38999999999999999999999999999999999876                68889999999999999998889999


Q ss_pred             EEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcceEE
Q 027785           89 LVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACV  168 (219)
Q Consensus        89 liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~~~v  168 (219)
                      |+||||.++.....++.+.+||+++++++++|+++|+|+++|+++|||+||++|+||...+.+++.+..+++.+    +|
T Consensus        65 viipGg~~~~~~~~~~~~~~~l~~~~~~~k~i~aiC~G~~~La~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~----vV  140 (166)
T d1g2ia_          65 LVLPGGRAPERVRLNEKAVSIARKMFSEGKPVASICHGPQILISAGVLRGRKGTSYPGIKDDMINAGVEWVDAE----VV  140 (166)
T ss_dssp             EEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEETTTTHHHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSS----CE
T ss_pred             EEEecccchhhhccChHHHHHHHHHHhcCCeeeeccccchhhhhcCcccCCccccCccHHHHHHHcCCeEcCCC----EE
Confidence            99999988766677899999999999999999999999999999999999999999999999999889998765    79


Q ss_pred             EcCCeEeCCCCCCHHHHHHHHHHHH
Q 027785          169 VDGNIITGATYEGHPEFIRLFLKAL  193 (219)
Q Consensus       169 ~dg~liT~~g~~s~~~~~l~li~~l  193 (219)
                      +|||+|||+|+.++.+|++++++.|
T Consensus       141 ~Dg~iiTs~g~~~~~~f~~~~i~~L  165 (166)
T d1g2ia_         141 VDGNWVSSRVPADLYAWMREFVKLL  165 (166)
T ss_dssp             EETTEEEECSGGGHHHHHHHHHHHH
T ss_pred             EeCCEEECCCHHHHHHHHHHHHHhh
Confidence            9999999999999999999999987

>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: DJ-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.4e-42  Score=262.00  Aligned_cols=175  Identities=23%  Similarity=0.348  Sum_probs=156.4

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCC-CCCc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEID-PTKY   86 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~-~~~~   86 (219)
                      +|||+|+++|||++.|+..|+++|+++|++++++|++++.               ++.++.|..+.+|.++++++ ..+|
T Consensus         1 sKkvlvll~~Gfe~~E~~~p~~~l~~ag~~v~~~s~~~~~---------------~v~~~~g~~i~~d~~l~d~~~~~~~   65 (186)
T d1p5fa_           1 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKD---------------PVQCSRDVVICPDASLEDAKKEGPY   65 (186)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSS---------------CEECTTSCEECCSEEHHHHHHTCCC
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEEecCCc---------------ceecCCCccccCccchhccCCcccc
Confidence            5899999999999999999999999999999999987642               68889999999999988764 3589


Q ss_pred             cEEEEcCCCC-cccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcc
Q 027785           87 DGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMA  165 (219)
Q Consensus        87 D~liipGG~~-~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~  165 (219)
                      |+|+||||.+ +..+..++.+.+||+++++++++|+++|+|+++|+++|+|+||++|+||...+.+++.+..+.....  
T Consensus        66 D~liipGG~~~~~~l~~~~~l~~~lr~~~~~~k~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~--  143 (186)
T d1p5fa_          66 DVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENR--  143 (186)
T ss_dssp             SEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHTTCSTTCEECCCGGGHHHHTTTSCSEECCCS--
T ss_pred             cEEEEecCccccccccchHHHHHHHHHhhccccceeecccCcchhhhcCCccccccccchhHHHHHHhcCceEEeccc--
Confidence            9999999975 5557788999999999999999999999999999999999999999999999999887665554443  


Q ss_pred             eEEEcCCeEeCCCCCCHHHHHHHHHHHHccccccc
Q 027785          166 ACVVDGNIITGATYEGHPEFIRLFLKALGGTITGS  200 (219)
Q Consensus       166 ~~v~dg~liT~~g~~s~~~~~l~li~~l~~~~~~~  200 (219)
                       +|+|||+|||+|+.++.+|++++++++.|+..++
T Consensus       144 -vv~Dg~iiT~~g~~~~~d~al~li~~l~g~~~a~  177 (186)
T d1p5fa_         144 -VEKDGLILTSRGPGTSFEFALAIVEALNGKEVAA  177 (186)
T ss_dssp             -EEEETTEEEECSGGGHHHHHHHHHHHHHCHHHHH
T ss_pred             -EEecCCEEECCCccHHHHHHHHHHHHhcCHHHHH
Confidence             8999999999999999999999999998885543

>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein YhbO
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.5e-40  Score=247.26  Aligned_cols=169  Identities=31%  Similarity=0.544  Sum_probs=155.8

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceecccc-CCccccccCccCCCCCCc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETR-GHNFALNATFDEIDPTKY   86 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~i~~~~~~~~~~~~~~   86 (219)
                      +|||+|+++|||++.|+..|+++|+++|+++.++++..+.               ++.++. +.++.+|.+++++++.+|
T Consensus         1 ~KkIail~~dgf~~~E~~~~~~~l~~ag~~v~~vs~~~~~---------------~v~~~~~~~~v~~d~~l~~~~~~~y   65 (170)
T d1oi4a1           1 SKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGK---------------TVKGKKGEASVTIDKSIDEVTPAEF   65 (170)
T ss_dssp             CCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTC---------------EEECTTSSCEEECCEEGGGCCGGGC
T ss_pred             CCEEEEEeCCCcCHHHHHHHHHHHHHCCCEEEeccCCCCc---------------eeeeeccCeEEecCCcHHHCChhhc
Confidence            4799999999999999999999999999999999987542               455554 488999999999998999


Q ss_pred             cEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcce
Q 027785           87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAA  166 (219)
Q Consensus        87 D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~~  166 (219)
                      |+|+||||.++..+..++.+++||+++++++++|+++|+|+++|+++|+|+||++|+||.....+++.|+++++.+.   
T Consensus        66 DalivpGG~~~~~l~~~~~~~~~i~~~~~~~k~i~aiC~g~~~La~~glL~g~~~T~~~~~~~~l~~~g~~~~~~~~---  142 (170)
T d1oi4a1          66 DALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEV---  142 (170)
T ss_dssp             SEEEECCBTHHHHHTTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSSC---
T ss_pred             eEEEEccchhhhhhccChHHHHHHHHHhhcCCeeeecccchHHHhhhhhccccccccCchHHHHHHhCCCEEecCCE---
Confidence            99999999988777889999999999999999999999999999999999999999999999999999999998874   


Q ss_pred             EEEcCCeEeCCCCCCHHHHHHHHHHHHc
Q 027785          167 CVVDGNIITGATYEGHPEFIRLFLKALG  194 (219)
Q Consensus       167 ~v~dg~liT~~g~~s~~~~~l~li~~l~  194 (219)
                      +|+||++|||+|+.++.+|++++++.|+
T Consensus       143 VVdd~~liTs~g~~~~~~fa~~~i~~Lg  170 (170)
T d1oi4a1         143 VVDKDQLVTSRTPDDLPAFNREALRLLG  170 (170)
T ss_dssp             EEETTTEEEESSGGGHHHHHHHHHHHHC
T ss_pred             EEECCEEEECCChhhHHHHHHHHHHHhC
Confidence            7788999999999999999999999885

>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Protein ThiJ (YajL)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.6e-39  Score=248.31  Aligned_cols=183  Identities=22%  Similarity=0.389  Sum_probs=157.5

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      +++++|+++|||++.|+..|+++|+++|+++++++.....             ..++.++.|.++.+|..++++++.+||
T Consensus         1 ~~~ali~l~~Gfe~~E~~~p~d~L~rag~~v~~~s~~~~~-------------~~~v~~~~G~~v~~d~~~~d~~~~d~D   67 (195)
T d2ab0a1           1 SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDG-------------NLAITCSRGVKLLADAPLVEVADGEYD   67 (195)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTT-------------CCEEECTTSCEEECSEEHHHHTTSCCS
T ss_pred             CceEEEEecCCccHHHHHHHHHHHHHCCCEEEEEEEcCCC-------------CceEEeCCCcEeecCcChHHcCcccce
Confidence            4689999999999999999999999999999999976542             116788889999999999998888999


Q ss_pred             EEEEcCCCC-cccccCChHHHHHHHHHHhcCCeEEEEehh-HHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcc
Q 027785           88 GLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHG-QLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMA  165 (219)
Q Consensus        88 ~liipGG~~-~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G-~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~  165 (219)
                      +|+||||.+ +..+..++.+.+|||++++++|+|+++|+| +++|+++|||+||++|+||..++.+  .++.+++.+   
T Consensus        68 ~liiPGG~~~~~~l~~~~~l~~~lr~~~~~gk~i~aiC~g~a~lLa~aGlL~g~~~T~~~~~~~~~--~~~~~~~~~---  142 (195)
T d2ab0a1          68 VIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKI--PAEQWLDKR---  142 (195)
T ss_dssp             EEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTTTSSSSSCBCCCGGGGGGS--CTTTBCCCS---
T ss_pred             EEEEccccCccccccccHHHHHHHHHHhhccceeeeeeccchhhhhhcCccCCCEEeccHHHhhhc--ccceEeecc---
Confidence            999999975 455678999999999999999999999999 5899999999999999999876544  245666654   


Q ss_pred             eEEEcCC--eEeCCCCCCHHHHHHHHHHHHccccccc--cceEEEecC
Q 027785          166 ACVVDGN--IITGATYEGHPEFIRLFLKALGGTITGS--DKRILFLCG  209 (219)
Q Consensus       166 ~~v~dg~--liT~~g~~s~~~~~l~li~~l~~~~~~~--~~~~~~~~~  209 (219)
                       +|+|||  +|||+|+.+++||++++|+++.++..++  ++.++|...
T Consensus       143 -vv~Dgn~~liTa~g~~a~~d~al~lie~l~g~e~A~~va~~l~~~~~  189 (195)
T d2ab0a1         143 -VVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVASQLVMAAG  189 (195)
T ss_dssp             -EEEETTTTEEEECSGGGHHHHHHHHHHHHTCHHHHHHHHTTTTCCTT
T ss_pred             -eEEECCCeEEECCCHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcc
Confidence             788986  7999999999999999999999985544  666666553

>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Atu0886
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=100.00  E-value=1.1e-37  Score=238.74  Aligned_cols=166  Identities=25%  Similarity=0.382  Sum_probs=143.9

Q ss_pred             CEEEEEecCCCCchhhHHHHHHHHh-CCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785            9 RSVLLLCGDYMEDYEAMVPFQALLA-FGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus         9 ~kv~il~~~g~~~~e~~~~~~~l~~-ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      +||+|++++||++.|+..+.+.|++ +|+++.++|++++                ++++++|..+.+|.+++++++.+||
T Consensus         2 ~kv~vll~~gf~~~E~~~~~~~l~~~~g~~v~~vs~~~~----------------~V~s~~G~~v~~d~~l~~~~~~~~D   65 (188)
T d2fexa1           2 TRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGM----------------PVTSMGGLKVTPDTSYDALDPVDID   65 (188)
T ss_dssp             CEEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSS----------------CEECTTCCEEECSEEGGGCCTTTCS
T ss_pred             CEEEEEeCCChhHHHHHHHHHHHhhcCCcEEEEEeCCCC----------------cEEcCCCCEEeecCchHHCChhhcc
Confidence            5999999999999999999999986 7999999999976                6889999999999999999888999


Q ss_pred             EEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCH-HHHHHC-C-CeEecCCCc
Q 027785           88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVK-PVLIAA-G-ASWIEPETM  164 (219)
Q Consensus        88 ~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~-~~l~~~-g-~~~~~~~~~  164 (219)
                      +|+||||.+... ..++.+++|||++++++++|+++|+|+++|+++|||+|+++|+||... +.+..+ + ..+.+++  
T Consensus        66 ~liipGG~~~~~-~~~~~l~~~lr~~~~~~~~i~aiC~g~~~La~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~--  142 (188)
T d2fexa1          66 ALVIPGGLSWEK-GTAADLGGLVKRFRDRDRLVAGICAAASALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQP--  142 (188)
T ss_dssp             EEEECCBSHHHH-TCCCCCHHHHHHHHHTTCEEEEETHHHHHHHHTTTTTTSCBCCSCHHHHHTSTTCCCGGGBCCCS--
T ss_pred             EEEecCCccccc-cccHHHHHHHHHHHHhCCEEEEecchhHHHHHcCccCCcEEeccchHhhhhhhhcCCCceEEeCC--
Confidence            999999987654 456789999999999999999999999999999999999999997533 323333 3 3344444  


Q ss_pred             ceEEEcCCeEeCCCCCCHHHHHHHHHHHHcc
Q 027785          165 AACVVDGNIITGATYEGHPEFIRLFLKALGG  195 (219)
Q Consensus       165 ~~~v~dg~liT~~g~~s~~~~~l~li~~l~~  195 (219)
                       .+|+|||+|||+| .+++|+++++++.|..
T Consensus       143 -~vV~DgnliTs~G-~aa~d~al~ii~~L~~  171 (188)
T d2fexa1         143 -RAVSDGGVVTAAG-SAPVSFAVEILKSLGL  171 (188)
T ss_dssp             -SCEEETTEEEECT-TCHHHHHHHHHHHTTC
T ss_pred             -EEEECCCEEECCC-chHHHHHHHHHHHhcc
Confidence             3899999999998 5799999999999853

>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: GK2698 ortholog
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=1.4e-33  Score=220.77  Aligned_cols=186  Identities=22%  Similarity=0.361  Sum_probs=151.2

Q ss_pred             CCEEEEEecC----------CCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccC
Q 027785            8 KRSVLLLCGD----------YMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNAT   77 (219)
Q Consensus         8 ~~kv~il~~~----------g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~   77 (219)
                      +|||+|++.+          |++..|+..|+++|+++|++|+++|+.+++......++....   .........+..+..
T Consensus         2 ~KkvLiv~s~~~~~~~~~~tG~~~~E~~~P~~~l~~aG~~V~~aS~~gg~~~~d~~~~~~~~---~~~~~~~~~l~~~~~   78 (221)
T d1u9ca_           2 SKRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKD---PSWAEAEAALKHTAR   78 (221)
T ss_dssp             CCEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCC---GGGHHHHHHTTSBEE
T ss_pred             CceEEEEecCchhccCCCcccccHHHHHHHHHHHHHCCCEEEEEecCCCcceeccCcccccc---chhHHHHHHhhCCCC
Confidence            5899999964          788889999999999999999999998875332222221111   112223345667778


Q ss_pred             ccCCCCCCccEEEEcCCCCcc-cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCc------ccCCceEeeCCC----
Q 027785           78 FDEIDPTKYDGLVIPGGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD------VVKGRKCTAYPP----  146 (219)
Q Consensus        78 ~~~~~~~~~D~liipGG~~~~-~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aG------lL~g~~~t~~~~----  146 (219)
                      ++++++.+||+|+||||+++. .++.++.+.++++++++++|+|++||+|+++|+.++      |++||++|+||.    
T Consensus        79 l~~v~~~dYd~v~iPGG~g~~~~l~~~~~l~~li~~~~~~~k~iaAIChgp~~l~~a~~~~g~~ll~Gk~~T~~p~~~e~  158 (221)
T d1u9ca_          79 LSKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNATYKDGTPIVKGKTVTSFTDEEER  158 (221)
T ss_dssp             CCGGGGSSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTSCBTTTTCEECCSCHHHHH
T ss_pred             hhHCCHhHCCEEEeCCCCchhhcchhhHHHHHHHHHHHhccCcceeecccceeeeccccCCCCceeCCceeeccCCHHHh
Confidence            888888999999999999864 488999999999999999999999999999999854      899999999975    


Q ss_pred             -----------CHHHHHHCCCeEecCCC-cceEEEcCCeEeCCCCCCHHHHHHHHHHHHccc
Q 027785          147 -----------VKPVLIAAGASWIEPET-MAACVVDGNIITGATYEGHPEFIRLFLKALGGT  196 (219)
Q Consensus       147 -----------~~~~l~~~g~~~~~~~~-~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~~  196 (219)
                                 .++.+++.|++|.+... ...+|+|||+||++|+.++.+|++.+++.|..+
T Consensus       159 ~~~~~~~~p~~~~~~l~~~Ga~y~~~~~~~~~Vv~Dg~lITg~~p~sa~~fa~~~v~~L~~k  220 (221)
T d1u9ca_         159 EVGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLITGQNPQSSRSTAEKVVAALEER  220 (221)
T ss_dssp             HHTCGGGSSSCHHHHHHHTTCEECCCSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHTT
T ss_pred             hcccccchhhhHHHHHHHCCCEEeecCCCCCCEEEECCEEECCChhhHHHHHHHHHHHHhcC
Confidence                       44567788999987643 245899999999999999999999999998654

>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Neurospora crassa [TaxId: 5141]

Probab=100.00  E-value=8.9e-35  Score=221.89  Aligned_cols=165  Identities=17%  Similarity=0.179  Sum_probs=146.4

Q ss_pred             CCCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCc
Q 027785            7 GKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKY   86 (219)
Q Consensus         7 ~~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~   86 (219)
                      ++|||+|+++|||+..|+..++++|+.+|+++++++++++                ++.++.|..+.++.++++.++.+|
T Consensus         2 ~~rkI~ilv~dG~~~~e~~~~~~~l~~ag~~v~ivs~~~~----------------~v~~~~g~~v~~d~~~~~~~~~~~   65 (184)
T d1sy7a1           2 KSRRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRS----------------KVTAANGSTVQPHHHLEGFRSTMV   65 (184)
T ss_dssp             TTCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESCSS----------------CEEBTTSCEECCSEETTTCCGGGS
T ss_pred             CccEEEEEecCCCcHHHHHHHHHHHHHCCCEEEEEEecCC----------------cccccccccccccccccccccccc
Confidence            3789999999999999999999999999999999999876                688889999999999999888899


Q ss_pred             cEEEEcCCCC-cccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEeeCCCCHHHHHHCCCeEecCCCcc
Q 027785           87 DGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMA  165 (219)
Q Consensus        87 D~liipGG~~-~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~~~~~~~~l~~~g~~~~~~~~~~  165 (219)
                      |++++|||.+ +..+..++.+.+||+++++++|+|+++|+|+++|+++|+|+||++|+||...+.+...+..+.+..   
T Consensus        66 dalivpgg~~~~~~~~~~~~~~~~l~~~~~~~k~i~aic~G~~~La~aGlL~g~~~Tt~~~~~~~~~~~~~~~~~~~---  142 (184)
T d1sy7a1          66 DAIFIPGGAKAAETLSKNGRALHWIREAFGHLKAIGATGEAVDLVAKAIALPQVTVSSEAEVHESYGVVTLKKVKPE---  142 (184)
T ss_dssp             SEEEECCCHHHHHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHHCCTTSCCCCSSSCEEETTEEEESSCCTT---
T ss_pred             eEEEEeeccccccccccccchhHHHHHHHhcCCceEEechHHHHHHHcCCCCCceeccCcchhhhhccccceeccCc---
Confidence            9999999964 455678999999999999999999999999999999999999999999998766543334444443   


Q ss_pred             eEEEcCCeEeCCCCCCHHHHHHHHHH
Q 027785          166 ACVVDGNIITGATYEGHPEFIRLFLK  191 (219)
Q Consensus       166 ~~v~dg~liT~~g~~s~~~~~l~li~  191 (219)
                       ++.||+++|+++.....+|+.+|.+
T Consensus       143 -~v~dg~~it~~~~~~~~~f~~~i~~  167 (184)
T d1sy7a1         143 -SFTDAVKIAKGAAGFLGEFFYAIAQ  167 (184)
T ss_dssp             -TTTSCCCCSTTCSSHHHHHHHHHHT
T ss_pred             -eEeECCEEecCCHhHHHHHHHHHHH
Confidence             7889999999999888899888865

>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Ydr533Cp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=3.2e-32  Score=214.52  Aligned_cols=187  Identities=19%  Similarity=0.264  Sum_probs=148.4

Q ss_pred             CCEEEEEecC------------CCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCC------cceeccccC
Q 027785            8 KRSVLLLCGD------------YMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTG------HQTYSETRG   69 (219)
Q Consensus         8 ~~kv~il~~~------------g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~------~~~~~~~~g   69 (219)
                      ||||+|++.+            |++..|+..|+++|+++|++|+++|+.+++.............      +.......+
T Consensus         2 pKkvLiv~t~~~~~~~~~g~~TG~~~~E~~~P~~~l~~aG~~V~iASp~G~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~   81 (236)
T d1qvwa_           2 PKKVLLALTSYNDVFYSDGMKTGVFVVEALHPFNTFRKEGFEVDFVSETGKFGWDEHSLAKDFLNGQDETDFKNKDSDFN   81 (236)
T ss_dssp             CCEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEECSSSCCCBCGGGGSTTTSCHHHHHHHHCTTSHHH
T ss_pred             CceEEEEEcCCccccCCCCCcCcccHHHHHHHHHHHHHCCCeEEEECCCCCCCCCcccccccccccHHHHHHhhhhHHHH
Confidence            6899999964            7788899999999999999999999987642111111111000      000111123


Q ss_pred             CccccccCccCCCCCCccEEEEcCCCCcc-cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC-------cccCCceE
Q 027785           70 HNFALNATFDEIDPTKYDGLVIPGGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA-------DVVKGRKC  141 (219)
Q Consensus        70 ~~i~~~~~~~~~~~~~~D~liipGG~~~~-~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a-------GlL~g~~~  141 (219)
                      ..+..+..++++++.+||+|++|||+++. .++.++.+.++|+++++++|+|++||||+.+|+.+       ++++||++
T Consensus        82 ~~l~~~~~~~~v~~~~ydav~ipGG~g~~~dl~~~~~l~~li~~~~~~gk~vaAIChGp~~L~~~~~~~~g~~ll~Gk~v  161 (236)
T d1qvwa_          82 KTLAKIKTPKEVNADDYQIFMASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAMFDGLTDKKTGRPLIEGKSI  161 (236)
T ss_dssp             HHHHTCBCGGGCCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTTCSBTTTTCEE
T ss_pred             HHHhcccChhhCCHhHCCEEEEeCCccchhcchhhhHHHHHHHHHHhcCCeEEEehhhHHHHHHHhhcccccccccCcee
Confidence            45677888999999999999999999874 48899999999999999999999999999988876       69999999


Q ss_pred             eeCCC-------------------CHHHHHHCCCeEecCC--CcceEEEcCCeEeCCCCCCHHHHHHHHHHHHc
Q 027785          142 TAYPP-------------------VKPVLIAAGASWIEPE--TMAACVVDGNIITGATYEGHPEFIRLFLKALG  194 (219)
Q Consensus       142 t~~~~-------------------~~~~l~~~g~~~~~~~--~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~  194 (219)
                      |+|+.                   .++.+++.|++|++..  ....+|+|||+||++++.|+..+++++|+.|.
T Consensus       162 T~f~~~ee~~~~~~~~~~~~~~~~le~~l~~~Ga~~~~~~~~~~~~VVvDg~lITGqnP~Sa~~~a~~~v~~L~  235 (236)
T d1qvwa_         162 TGFTDVGETIMGVDSILKAKNLATVEDVAKKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAHSTAVRSIDALK  235 (236)
T ss_dssp             CCSCHHHHHHTTCHHHHHHTTCCCHHHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHGGG
T ss_pred             ccCCcHHHhhccccccccCCCcccHHHHHHHcCCEEeccCCCCCCCEEEeCCEEeCCChhhHHHHHHHHHHHhc
Confidence            99964                   3566778899998653  13458999999999999999999999999874

>d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: HSP31 (HchA; YedU)
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.4e-30  Score=208.22  Aligned_cols=189  Identities=17%  Similarity=0.234  Sum_probs=145.6

Q ss_pred             CCEEEEEec--------------CCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCc-ceeccccCCcc
Q 027785            8 KRSVLLLCG--------------DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGH-QTYSETRGHNF   72 (219)
Q Consensus         8 ~~kv~il~~--------------~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~i   72 (219)
                      ++||+|++.              -|+...|+..|+.+|+++||+|+++|+.+++.....++....+.. ..........+
T Consensus        44 ~~kIL~V~s~~~~~~~~~g~~~~TG~~~~E~~~P~~~l~~AG~eVdiASp~G~~~~~D~~s~~~~d~~~~~~~~~~~~~~  123 (279)
T d1n57a_          44 KHKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGLMTKFEYWAMPHKDEKVMPFFEQHKSLF  123 (279)
T ss_dssp             SCEEEEECCSCCEEECTTSCEEECCBCHHHHHHHHHHHHHTTCCEEEEESSSCCCCBCGGGCCTTCTTHHHHHHHHHHHH
T ss_pred             CceEEEEEcCccccccCCCccccCccCHHHHHHHHHHHHHCCCEEEEECCCCCCCCcCccccccccHHHHHHHHhHHHHH
Confidence            579999996              388999999999999999999999999988654333333322110 00000111112


Q ss_pred             ccccCc-----cCCCCCCccEEEEcCCCCc-ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC----cccCCceEe
Q 027785           73 ALNATF-----DEIDPTKYDGLVIPGGRAP-EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA----DVVKGRKCT  142 (219)
Q Consensus        73 ~~~~~~-----~~~~~~~~D~liipGG~~~-~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a----GlL~g~~~t  142 (219)
                      .....+     +..+..+||+|++|||+|+ ..++.++.+.++|+++++++|+|++||||+..|..+    ++++||++|
T Consensus       124 ~~~~~L~dv~~~~~~~~dYdav~iPGGhG~~~dL~~~~~l~~ll~~~~~~gk~vaaICHGPa~Ll~a~~g~~l~~Gk~vT  203 (279)
T d1n57a_         124 RNPKKLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALRHGDNPLNGYSIC  203 (279)
T ss_dssp             HSCEEHHHHHHTCCTTCSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGTTSCCTTTTCEEC
T ss_pred             hCchhhhhhhhcccccccccEEEecCCccchhhhhHHHHHHHHHHHHHHcCCcceeccccchhhhhcccCCcccCCeEEe
Confidence            211222     2234568999999999986 458899999999999999999999999999998877    689999999


Q ss_pred             eCCC-------------------CHHHHHHCCCeEecCCCcceEEEcCCeEeCCCCCCHHHHHHHHHHHHccc
Q 027785          143 AYPP-------------------VKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGT  196 (219)
Q Consensus       143 ~~~~-------------------~~~~l~~~g~~~~~~~~~~~~v~dg~liT~~g~~s~~~~~l~li~~l~~~  196 (219)
                      +++.                   .++.+++.|+.+.+.+....+|+|||+||++++.|+.+++..+++.|...
T Consensus       204 ~f~~~eE~~~~~~~~~p~~~~~~le~~L~~~Ga~~~~~~~~~~Vv~D~~LITGqnP~Sa~~~a~~~v~~Ll~a  276 (279)
T d1n57a_         204 AFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRKLLTGDSPFAANALGKLAAQEMLAA  276 (279)
T ss_dssp             CCCGGGGGTTTTTTSSSSCCSSCHHHHHHHTTCEECCSSCSCCEEEETTEEEESSGGGHHHHHHHHHHHHHHH
T ss_pred             ecCCHHHhccchhccCcccccccHHHHHHHcCCEEECCCCCCCEEEeCCEEeCCCcccHHHHHHHHHHHHHHH
Confidence            9864                   35678888999987764456999999999999999999999999887544

>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=8.9e-28  Score=186.44  Aligned_cols=169  Identities=20%  Similarity=0.220  Sum_probs=128.1

Q ss_pred             CEEEEEec-----CCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCC--CcccccCCCcceeccccCCccccccCccCC
Q 027785            9 RSVLLLCG-----DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVC--PTAVHQSTGHQTYSETRGHNFALNATFDEI   81 (219)
Q Consensus         9 ~kv~il~~-----~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~   81 (219)
                      |||+|++.     ||+++.|+..+++.|+++|+++++++++.++....  .........++......++.+..+.+++++
T Consensus         2 kKvaviLsg~g~~DG~E~~E~~~~~~~L~raG~~v~~~sp~~~~~~~~~h~~~~~~~~~r~~~~~~~~i~~~~~~~l~~v   81 (217)
T d1vhqa_           2 KKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQA   81 (217)
T ss_dssp             CEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGGC
T ss_pred             CEEEEEecCCCCCCchhHHHHHHHHHHHHHCCCEEEEEecCCCccceeccCCCcccccccceeeeeeeeeccccCChHHC
Confidence            69999974     89999999999999999999999999987643211  000000000111122334445566778999


Q ss_pred             CCCCccEEEEcCCCCc-ccc----------cCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCceEee-CCCCHH
Q 027785           82 DPTKYDGLVIPGGRAP-EYL----------AMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTA-YPPVKP  149 (219)
Q Consensus        82 ~~~~~D~liipGG~~~-~~~----------~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~~t~-~~~~~~  149 (219)
                      ++.+||+|+||||.++ ..+          +.++.+.++++++++++|+|++||+|+++|+.++.+.+++.++ |+...+
T Consensus        82 ~~~~yDaliiPGG~g~~~~l~~~~~~~~~~~~~~~v~~li~~~~~~gk~iaaIC~gp~~l~~~~~~~~~~~~~~~~~~~~  161 (217)
T d1vhqa_          82 DAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFDFPLRLTIGTDIDTAE  161 (217)
T ss_dssp             CGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHCSSCCEECCCSCHHHHH
T ss_pred             CHhHCCEEEecCCcccHHHHhhhhccccccccCHHHHHHHHHHHHcCCCEEEEChhHHHHHHHhccCCCeeeccChhhHH
Confidence            9999999999999874 223          3468999999999999999999999999999999888875554 666778


Q ss_pred             HHHHCCCeEecCCCcceEEE-cCCeEeCC
Q 027785          150 VLIAAGASWIEPETMAACVV-DGNIITGA  177 (219)
Q Consensus       150 ~l~~~g~~~~~~~~~~~~v~-dg~liT~~  177 (219)
                      .+++.|++|++.+.+..+|+ |||+||+.
T Consensus       162 ~l~~~Ga~~v~~~~~~~vVD~dg~ivTsp  190 (217)
T d1vhqa_         162 VLEEMGAEHVPCPVDDIVVDEDNKIVTTP  190 (217)
T ss_dssp             HHHHTTCEECCCCTTCCEEETTTTEEEEC
T ss_pred             HHHHcCCcEEeccCCeEEEecCCCEEccc
Confidence            88899999998765444443 59999974

>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Escherichia coli, HPII [TaxId: 562]

Probab=99.92  E-value=3.1e-25  Score=164.25  Aligned_cols=116  Identities=19%  Similarity=0.199  Sum_probs=108.0

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      +|||+||++|||+..|+..++++|+++|+++.+++++.+                .+.++.|..+.++.++++.++.+||
T Consensus         3 grkVaiLv~dg~~~~e~~~~~~~l~~ag~~v~~v~~~~~----------------~v~~~~G~~i~~d~t~~~~~~~~yD   66 (156)
T d1p80a1           3 GRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMG----------------EVTADDGTVLPIAATFAGAPSLTVD   66 (156)
T ss_dssp             TCEEEEECCTTCCHHHHHHHHHHHHHHTCEEEEEESSSS----------------EEECTTSCEEECCEETTTSCGGGCS
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEecccc----------------cccccceeEEeeeeeeccCCcccCC
Confidence            789999999999999999999999999999999999876                6888899999999999999888999


Q ss_pred             EEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhCcccCCce
Q 027785           88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRK  140 (219)
Q Consensus        88 ~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~aGlL~g~~  140 (219)
                      +|+||||.+. .+..++.+++||+++++++|+|+++|+|+++|+.+|+++++.
T Consensus        67 aliiPGG~~~-~l~~~~~~~~~i~e~~~~~K~I~aic~g~~~La~agl~~~~~  118 (156)
T d1p80a1          67 AVIVPCGNIA-DIADNGDANYYLMEAYKHLKPIALAGDARKFKATIKIADQGE  118 (156)
T ss_dssp             EEEECCSCTH-HHHTCHHHHHHHHHHHHTTCCEEEEGGGGGGGGTTTCCSSCC
T ss_pred             EEEeeCCchH-HHhcchHHHHHHHHHHHcCCeEEEECchHHHHHHcCCCcCCC
Confidence            9999999754 467899999999999999999999999999999999998753

>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.90  E-value=7e-10  Score=83.93  Aligned_cols=86  Identities=22%  Similarity=0.383  Sum_probs=65.4

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      ++||+||.++|    .+......|++.|+++.++...                                  +++  .++|
T Consensus         6 ~mkIgii~~~G----n~~s~~~al~~~G~~~~~v~~~----------------------------------~~l--~~~D   45 (202)
T d1q7ra_           6 NMKIGVLGLQG----AVREHVRAIEACGAEAVIVKKS----------------------------------EQL--EGLD   45 (202)
T ss_dssp             CCEEEEESCGG----GCHHHHHHHHHTTCEEEEECSG----------------------------------GGG--TTCS
T ss_pred             CCEEEEEECCC----CHHHHHHHHHHCCCcEEEECCH----------------------------------HHH--hcCC
Confidence            46999999876    3455578899999998887421                                  112  3799


Q ss_pred             EEEEcCCCCc--ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           88 GLVIPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        88 ~liipGG~~~--~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      .||+|||...  ........+.++|+++.++++|+.+||.|.++|+..
T Consensus        46 ~lIlPGG~~~~~~~~l~~~~l~~~I~~~~~~gkPiLGIClG~Qll~~~   93 (202)
T d1q7ra_          46 GLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPMFGTCAGLILLAKR   93 (202)
T ss_dssp             EEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETTHHHHHEEE
T ss_pred             EEEECCCCcHHHHHHhhhhHHHHHHhhhccccceeeeeehhhHHhhhh
Confidence            9999998632  222234567899999999999999999999999864

>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus subtilis [TaxId: 1423]

Probab=98.80  E-value=2.2e-09  Score=80.68  Aligned_cols=85  Identities=24%  Similarity=0.371  Sum_probs=64.2

Q ss_pred             CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG   88 (219)
Q Consensus         9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~   88 (219)
                      +||+|+-++|-    +......|+++|+++.++....                                  ++  .++|.
T Consensus         2 ~~igv~~~~G~----~~~~~~al~~~G~~~~~i~~~~----------------------------------~l--~~~D~   41 (195)
T d2nv0a1           2 LTIGVLGLQGA----VREHIHAIEACGAAGLVVKRPE----------------------------------QL--NEVDG   41 (195)
T ss_dssp             CEEEEECSSSC----CHHHHHHHHHTTCEEEEECSGG----------------------------------GG--GGCSE
T ss_pred             cEEEEEecCCh----HHHHHHHHHHCCCcEEEECCHH----------------------------------HH--hhCCE
Confidence            59999999873    3445778999999988874311                                  11  36899


Q ss_pred             EEEcCCCCc--ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           89 LVIPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        89 liipGG~~~--~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ||+|||...  ........+.++|+++.++++|+.+||.|.++|+++
T Consensus        42 lIlPGG~~~~~~~~~~~~~~~~~I~~~~~~g~pilGIC~G~Qll~~~   88 (195)
T d2nv0a1          42 LILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAGLIILAKE   88 (195)
T ss_dssp             EEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHHHHHHSBC
T ss_pred             EEECCCCccHHHHHhhhchhcchhhhhhhhcceeeeccccHHHHHhh
Confidence            999998532  222233456788999999999999999999999975

>d1t3ta2 c.23.16.1 (A:1034-1295) FGAM synthase PurL, amidotransferase domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: FGAM synthase PurL, amidotransferase domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.77  E-value=1.2e-08  Score=79.68  Aligned_cols=99  Identities=17%  Similarity=0.192  Sum_probs=69.2

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      ..||+||.++|.+  --.....+|+.+|++++.+....                              ..-...+..+||
T Consensus         6 kpkvaVl~~pGtN--cd~e~~~Af~~aG~~~~~v~~~d------------------------------l~~~~~~L~~~~   53 (262)
T d1t3ta2           6 RPKVAVLREQGVN--SHVEMAAAFHRAGFDAIDVHMSD------------------------------LLGGRIGLGNFH   53 (262)
T ss_dssp             CCEEEEEECTTBC--CHHHHHHHHHHTTCEEEEEEHHH------------------------------HHHTSCCGGGCS
T ss_pred             CCeEEEEeCCCCC--cHHHHHHHHHHcCCceEEEEeee------------------------------cccCcccccccc
Confidence            3599999999976  33455578999999998874421                              001112345899


Q ss_pred             EEEEcCCCCccc-c----------cCChHHHHHHHHHHh-cCCeEEEEehhHHHHHhCc-ccCC
Q 027785           88 GLVIPGGRAPEY-L----------AMNDSVIDLVRKFSN-SGKTIASICHGQLILAAAD-VVKG  138 (219)
Q Consensus        88 ~liipGG~~~~~-~----------~~~~~l~~~l~~~~~-~~~~v~~ic~G~~~La~aG-lL~g  138 (219)
                      +|+||||++-.+ +          ..+..+.+.+.+++. .+++|.+||+|.++|.++| |+.|
T Consensus        54 ~lvipGGFSygD~l~ag~~~a~~~~~~~~~~~~~~~f~~~~~~~iLGICNGfQiL~elg~l~pg  117 (262)
T d1t3ta2          54 ALVACGGFSYGDVLGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNLRELIPG  117 (262)
T ss_dssp             EEEECCBCGGGGTTSTTHHHHHHHHHSHHHHHHHHHHHHSSSCEEEEETHHHHHHHTTGGGSTT
T ss_pred             eEEEeccccccccccchhHHHhhhhhhhHHHHHHHHHhhcCCceEEeechHHHHHHHhcccCCC
Confidence            999999975322 1          223455666666665 5899999999999999996 5555

>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein TM1158
species: Thermotoga maritima [TaxId: 2336]

Probab=98.67  E-value=3.8e-08  Score=75.67  Aligned_cols=94  Identities=17%  Similarity=0.152  Sum_probs=70.0

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      .+||+|+....++  +.....++|+..|++++++....+                             ..+.+ +..+||
T Consensus         3 ~mrvli~qh~~~e--~~G~~~~~l~~~g~~~~~~~~~~~-----------------------------~~~p~-~l~~~d   50 (230)
T d1o1ya_           3 HVRVLAIRHVEIE--DLGMMEDIFREKNWSFDYLDTPKG-----------------------------EKLER-PLEEYS   50 (230)
T ss_dssp             CCEEEEECSSTTS--SCTHHHHHHHHTTCEEEEECGGGT-----------------------------CCCSS-CGGGCS
T ss_pred             ceEEEEEECCCCC--CcHHHHHHHHHCCCEEEEEECCCC-----------------------------CcCCc-chhhCC
Confidence            3589999877666  677789999999999998865421                             01111 124799


Q ss_pred             EEEEcCCCC-ccc---ccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           88 GLVIPGGRA-PEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        88 ~liipGG~~-~~~---~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      .+||+||+. +..   .+....+.++|++..++++||.+||.|.++|+.+
T Consensus        51 ~iii~Ggp~~~~d~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a  100 (230)
T d1o1ya_          51 LVVLLGGYMGAYEEEKYPFLKYEFQLIEEILKKEIPFLGICLGSQMLAKV  100 (230)
T ss_dssp             EEEECCCSCCTTCTTTCTHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHH
T ss_pred             EEEEcCCCcccccchhhhhhHHHHHHHHHHHHhcceEEEeecCHHHHHHH
Confidence            999999864 321   1223467899999999999999999999999986

>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.04  E-value=6.4e-06  Score=61.20  Aligned_cols=87  Identities=18%  Similarity=0.248  Sum_probs=58.5

Q ss_pred             CEEEEEecC-CCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785            9 RSVLLLCGD-YMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus         9 ~kv~il~~~-g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      +||+|+=+- ++.    ......|+..|.++.++..+.                               +..++  ..||
T Consensus         2 ~ki~iiD~g~~~~----~~i~r~l~~lg~~~~i~~~d~-------------------------------~~~~~--~~~d   44 (196)
T d2a9va1           2 LKIYVVDNGGQWT----HREWRVLRELGVDTKIVPNDI-------------------------------DSSEL--DGLD   44 (196)
T ss_dssp             CBEEEEEESCCTT----CHHHHHHHHTTCBCCEEETTS-------------------------------CGGGG--TTCS
T ss_pred             CEEEEEECCCcHH----HHHHHHHHHCCCeEEEEeCCC-------------------------------CHHHH--hcCC
Confidence            588887653 332    355677888888776663321                               12222  3799


Q ss_pred             EEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        88 ~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      .||++||.+... .....+..+++...++++|+.+||.|.++|+.+
T Consensus        45 giIl~Gg~~~~~-~~~~~~~~l~~~~~~~~~PilGIC~G~Qll~~~   89 (196)
T d2a9va1          45 GLVLSGGAPNID-EELDKLGSVGKYIDDHNYPILGICVGAQFIALH   89 (196)
T ss_dssp             EEEEEEECSCGG-GTGGGHHHHHHHHHHCCSCEEEETHHHHHHHHH
T ss_pred             cEEEeccccccc-cccchhhhHHHHHhhcCceEEEeehhhhhhhhc
Confidence            999999865321 123345566666667899999999999999986

>d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Pyridoxine biosynthesis protein 2, Pdx2
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.00  E-value=1.6e-06  Score=65.48  Aligned_cols=49  Identities=33%  Similarity=0.526  Sum_probs=33.7

Q ss_pred             CccEEEEcCCCCcc----cccCChHHHHHHHHHH-hcCCeEEEEehhHHHHHhC
Q 027785           85 KYDGLVIPGGRAPE----YLAMNDSVIDLVRKFS-NSGKTIASICHGQLILAAA  133 (219)
Q Consensus        85 ~~D~liipGG~~~~----~~~~~~~l~~~l~~~~-~~~~~v~~ic~G~~~La~a  133 (219)
                      ++|.||||||....    .+.....+.+.|.+++ .+++||.+||.|.++|+..
T Consensus        42 ~~D~lIlPGgg~~~~~~~~~~~~~~~~~~i~~~~~~~gkPilGIC~G~QlL~~~   95 (218)
T d2abwa1          42 LCDGLVIPGGESTTVRRCCAYENDTLYNALVHFIHVLKKPIWGTCAGCILLSKN   95 (218)
T ss_dssp             TCSEEEECCSCHHHHHHHTTHHHHHHHHHHHHHHHTSCCCEEEETHHHHHTEEE
T ss_pred             hCCEEEEcCCCccHHHHHHHHHhccchHHHHHHHHHcCCeEEEecHHHHHHHHh
Confidence            78999999975321    1222233444455444 5799999999999999865

>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=97.99  E-value=2.3e-06  Score=63.81  Aligned_cols=49  Identities=33%  Similarity=0.605  Sum_probs=37.8

Q ss_pred             CCccEEEEcC-CC-Cc--ccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           84 TKYDGLVIPG-GR-AP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        84 ~~~D~liipG-G~-~~--~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ..+|.||+|| |. +.  ..+ ....+.+.|+++.++++||.+||.|.++|+..
T Consensus        41 ~~~D~lIlPG~G~f~~~~~~l-~~~~~~~~i~~~~~~~~PiLGIClG~QlL~~~   93 (200)
T d1k9vf_          41 DLYDLLFIPGVGHFGEGMRRL-RENDLIDFVRKHVEDERYVVGVCLGMQLLFEE   93 (200)
T ss_dssp             CCCSEEEECCCSCHHHHHHHH-HHTTCHHHHHHHHHTTCEEEEETHHHHTTEEE
T ss_pred             hccCeEEEcChHHHHHHHHhh-hcccccccccccccccceEEEEecceeEEeee
Confidence            3689999998 43 21  122 23357889999999999999999999999864

>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=6.5e-05  Score=56.94  Aligned_cols=87  Identities=20%  Similarity=0.241  Sum_probs=63.6

Q ss_pred             CEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccE
Q 027785            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDG   88 (219)
Q Consensus         9 ~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~   88 (219)
                      .||+|+=+ |..    ...+..|++.|..++++..+.                               +.+++...++|.
T Consensus        40 ~~i~~~D~-G~k----~~ilr~l~~~~~~~~v~p~~~-------------------------------~~~~i~~~~pdg   83 (228)
T d1a9xb2          40 FHVVAYDF-GAK----RNILRMLVDRGCRLTIVPAQT-------------------------------SAEDVLKMNPDG   83 (228)
T ss_dssp             EEEEEEES-SCC----HHHHHHHHHTTEEEEEEETTC-------------------------------CHHHHHTTCCSE
T ss_pred             ceEEEEeC-CCc----HHhHhHHHhcCceEEEcCCCC-------------------------------CHHHHHhcCCCE
Confidence            34555533 444    335588999999998886542                               122333347999


Q ss_pred             EEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           89 LVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        89 liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ||+.||+|..  .......+.++++.+.+.||.+||-|-++|+.+
T Consensus        84 ivlS~GPg~P--~~~~~~~~~~~~~~~~~iPILGIClG~Qlia~~  126 (228)
T d1a9xb2          84 IFLSNGPGDP--APCDYAITAIQKFLETDIPVFGICLGHQLLALA  126 (228)
T ss_dssp             EEECCCSBCS--TTCHHHHHHHHHHTTSCCCEEEETHHHHHHHHH
T ss_pred             EEEeCCCCcc--ccchhHHHHHHHHHhCCCCEEEEEcChHHHHHH
Confidence            9999998742  245678899999999999999999999999976

>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.72  E-value=2.9e-05  Score=56.91  Aligned_cols=75  Identities=19%  Similarity=0.345  Sum_probs=56.1

Q ss_pred             HHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCcccccCCh
Q 027785           25 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMND  104 (219)
Q Consensus        25 ~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~~~~~  104 (219)
                      ..+...|+..|+++.++..+.                               ++++++.-.+|.|+++||.+..   ...
T Consensus        14 ~~i~~~L~~~G~~~~v~~~~~-------------------------------~~~~~~~~~~~gvilsgg~~~~---~~~   59 (188)
T d1wl8a1          14 HRIWRTLRYLGVETKIIPNTT-------------------------------PLEEIKAMNPKGIIFSGGPSLE---NTG   59 (188)
T ss_dssp             HHHHHHHHHTTCEEEEEETTC-------------------------------CHHHHHHTCCSEEEECCCSCTT---CCT
T ss_pred             HHHHHHHHHCCCeEEEEeCCC-------------------------------CHHHHhhhccceeeeccCcccc---ccc
Confidence            456788999999998875432                               1222222368999999987642   344


Q ss_pred             HHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785          105 SVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus       105 ~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ....++++..+.++|+.+||.|-++|+.+
T Consensus        60 ~~~~~i~~~~~~~~PiLGIClG~Q~l~~~   88 (188)
T d1wl8a1          60 NCEKVLEHYDEFNVPILGICLGHQLIAKF   88 (188)
T ss_dssp             THHHHHHTGGGTCSCEEEETHHHHHHHHH
T ss_pred             ccccccccccccccceeehhhhhhhhhhh
Confidence            57778888899999999999999999975

>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=97.58  E-value=0.00011  Score=53.60  Aligned_cols=85  Identities=26%  Similarity=0.252  Sum_probs=59.9

Q ss_pred             EEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEE
Q 027785           10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGL   89 (219)
Q Consensus        10 kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l   89 (219)
                      ||+|+=+.   ..-+......|+..|+++.+++...                                  ++  .++|.+
T Consensus         2 ki~IiD~G---~gN~~si~~~l~~lg~~~~i~~~~~----------------------------------~i--~~~d~l   42 (195)
T d1ka9h_           2 KALLIDYG---SGNLRSAAKALEAAGFSVAVAQDPK----------------------------------AH--EEADLL   42 (195)
T ss_dssp             EEEEECSS---CSCHHHHHHHHHHTTCEEEEESSTT----------------------------------SC--SSCSEE
T ss_pred             EEEEEeCC---CcHHHHHHHHHHHCCCeEEEECCHH----------------------------------HH--HHHhhh
Confidence            77766432   2255667888999999888764321                                  22  368999


Q ss_pred             EEcCCCCcc---cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           90 VIPGGRAPE---YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        90 iipGG~~~~---~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ++||+....   .......+...+......++++.++|.|.++|+..
T Consensus        43 IlpG~g~~~~~~~~~~~~~~~~~~~~~~~~g~pilGiClG~qll~~~   89 (195)
T d1ka9h_          43 VLPGQGHFGQVMRAFQESGFVERVRRHLERGLPFLGICVGMQVLYEG   89 (195)
T ss_dssp             EECCCSCHHHHHHTTSSSCTHHHHHHHHHTTCCEEECTHHHHTTSSE
T ss_pred             hcCCCccccchhhhccccCCcccccccccccchhhhhhhhhheeeec
Confidence            999986432   22233346677888888999999999999999864

>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.57  E-value=1.7e-05  Score=58.61  Aligned_cols=78  Identities=18%  Similarity=0.124  Sum_probs=53.4

Q ss_pred             HHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCcccccCChH
Q 027785           26 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDS  105 (219)
Q Consensus        26 ~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~~~~~~  105 (219)
                      .+.+.|++.|.++.++..+..                              +++++....+|.|++.||++...-.....
T Consensus        16 Ni~~~l~~lG~~~~vi~~d~~------------------------------~~~~i~~~~~~gvilsgGp~~~~~~~~~~   65 (195)
T d1qdlb_          16 NIAQIVGELGSYPIVIRNDEI------------------------------SIKGIERIDPDRLIISPGPGTPEKREDIG   65 (195)
T ss_dssp             HHHHHHHHTTCEEEEEETTTS------------------------------CHHHHHHHCCSEEEECCCSSCTTSHHHHT
T ss_pred             HHHHHHHhCCCeEEEEeCCCC------------------------------CHHHHHhhCCCccccCCCCCccccccccc
Confidence            456789999999988865421                              12222223589999999876321111223


Q ss_pred             HHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785          106 VIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus       106 l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ...++.+..+.++|+.+||-|.++|+.+
T Consensus        66 ~~~~i~~~~~~~~PiLGIClG~Qll~~~   93 (195)
T d1qdlb_          66 VSLDVIKYLGKRTPILGVCLGHQAIGYA   93 (195)
T ss_dssp             THHHHHHHHTTTSCEEEETHHHHHHHHH
T ss_pred             cchhhhhhhcCCCCEEEeehhhhhhhhc
Confidence            4456777788999999999999999976

>d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS (MetA) {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: HTS-like
domain: Homoserine O-succinyltransferase HTS (MetA)
species: Bacillus cereus [TaxId: 1396]

Probab=97.52  E-value=0.00015  Score=56.51  Aligned_cols=57  Identities=21%  Similarity=0.335  Sum_probs=45.0

Q ss_pred             CccCCCCCCccEEEEcCCCC-cc---cccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           77 TFDEIDPTKYDGLVIPGGRA-PE---YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        77 ~~~~~~~~~~D~liipGG~~-~~---~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      +++++....||++||.|++- ..   ...--+++.++++...++.+++.+||-|+.+++.+
T Consensus        75 ~~~~i~~~~fDglIITGap~~~~~fedv~y~~eL~eii~~a~~~~~~~lgiCwGaQa~~~~  135 (281)
T d2ghra1          75 TFRDIENEKFDGLIITGAPVETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYH  135 (281)
T ss_dssp             CHHHHTTCCEEEEEECCCSCTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHH
T ss_pred             hHHHhhcccCCEEEEeCCCCCcccccccccHHHHHHHHHHHHhcCCCeEEEcHHHHHHHHH
Confidence            45555567899999999863 21   12234689999999999999999999999998876

>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Serratia marcescens [TaxId: 615]

Probab=97.51  E-value=3.5e-05  Score=56.90  Aligned_cols=90  Identities=14%  Similarity=0.158  Sum_probs=58.3

Q ss_pred             EEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEc
Q 027785           13 LLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIP   92 (219)
Q Consensus        13 il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liip   92 (219)
                      |++-|.++... ..+.+.|++.|.++.++..+...                           +...+++...++|+|++.
T Consensus         3 iliiD~~DSFt-~ni~~~l~~lG~~~~v~~~~~~~---------------------------~~~~~~l~~~~~~~iils   54 (192)
T d1i7qb_           3 ILLLDNVDSFT-YNLVDQLRASGHQVVIYRNQIGA---------------------------EVIIERLQHMEQPVLMLS   54 (192)
T ss_dssp             EEEEECSCSSH-HHHHHHHHHTTCEEEEEETTSCH---------------------------HHHHHHHHHCSSEEEEEC
T ss_pred             EEEEECCCcHH-HHHHHHHHHCCCeEEEEeCCCcc---------------------------cccHHHHHhcCCCeEEec
Confidence            34445444211 34577899999999888654320                           111122222368999998


Q ss_pred             CCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           93 GGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        93 GG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      ||++...   +.....++++..++++|+.+||-|.++|+.+
T Consensus        55 ~Gpg~~~---~~~~~~~i~~~l~~~iPiLGIClG~Q~la~~   92 (192)
T d1i7qb_          55 PGPGTPS---EAGCMPELLQRLRGQLPIIGICLGHQAIVEA   92 (192)
T ss_dssp             CCSSCGG---GSTTHHHHHHHHBTTBCEEEETHHHHHHHHH
T ss_pred             Ccccccc---ccccchhhHHhhhcCccEEeeeHHHHHHHHH
Confidence            8877432   1222445677888999999999999999986

>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthetase
species: Escherichia coli [TaxId: 562]

Probab=97.37  E-value=2.7e-05  Score=58.00  Aligned_cols=89  Identities=15%  Similarity=0.220  Sum_probs=58.6

Q ss_pred             CCEEEEEecCCCCchhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCcc
Q 027785            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYD   87 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D   87 (219)
                      ++||+|+=+- ..  -.......++..|+.+++++.+..                            ...+..   ..+|
T Consensus         5 ~~kI~IiD~G-~~--~~~~I~r~lr~lg~~~~I~~~d~~----------------------------~~~~~~---~~~~   50 (205)
T d1gpma2           5 KHRILILDFG-SQ--YTQLVARRVRELGVYCELWAWDVT----------------------------EAQIRD---FNPS   50 (205)
T ss_dssp             SSEEEEEECS-CT--THHHHHHHHHHTTCEEEEEESCCC----------------------------HHHHHH---HCCS
T ss_pred             cCeEEEEECC-ch--HHHHHHHHHHHCCCEEEEECCCCC----------------------------HHHHhh---cCCC
Confidence            6799988652 22  123356788899999988865421                            011122   2589


Q ss_pred             EEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           88 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        88 ~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      .+++.||++...   +.....++++..+.++|+.+||.|.++|+.+
T Consensus        51 giils~gp~~~~---~~~~~~~~~~~~~~~~PiLGIClG~Qlla~~   93 (205)
T d1gpma2          51 GIILSGGPESTT---EENSPRAPQYVFEAGVPVFGVCYGMQTMAMQ   93 (205)
T ss_dssp             EEEECCCSSCTT---STTCCCCCGGGGTSSSCEEEETHHHHHHHHH
T ss_pred             eEEecCCCCccc---hhhhhhHHHHHHhCCCCEEEeccchhhhhhh
Confidence            999999986321   1112234556677899999999999999986

>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.002  Score=49.05  Aligned_cols=45  Identities=20%  Similarity=0.335  Sum_probs=38.6

Q ss_pred             CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHH
Q 027785           84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA  131 (219)
Q Consensus        84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La  131 (219)
                      .++|.|+||||+|.+   .-+--+.-++.+.+++.|..+||.|.++..
T Consensus        56 ~~~dGIlvPGGFG~R---G~eGki~ai~yARen~iPfLGIClGmQ~av  100 (258)
T d1s1ma1          56 KGLDAILVPGGFGYR---GVEGMITTARFARENNIPYLGICLGMQVAL  100 (258)
T ss_dssp             TTCSEEEECCCCSST---THHHHHHHHHHHHHTTCCEEEETHHHHHHH
T ss_pred             cccccEEeecccCcC---CHHHHHHHHHHHHHcCccHHHHHHHHHHHH
Confidence            579999999999853   457788889999999999999999998554

>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.93  E-value=0.0052  Score=46.44  Aligned_cols=45  Identities=18%  Similarity=0.301  Sum_probs=37.0

Q ss_pred             CCccEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHHHHH
Q 027785           84 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA  131 (219)
Q Consensus        84 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La  131 (219)
                      .++|.|+||||+|.+   .-+--+.-++.+.+++.|..+||.|.++..
T Consensus        57 ~~~dGIlvPGGFG~r---G~eGki~ai~yARen~iPfLGIClGmQ~av  101 (250)
T d1vcoa1          57 RDVSGILVPGGFGVR---GIEGKVRAAQYARERKIPYLGICLGLQIAV  101 (250)
T ss_dssp             TTCSCEEECCCCSST---THHHHHHHHHHHHHTTCCEEEETHHHHHHH
T ss_pred             hcCCeEEecCCCCcc---chHHHHHHHHHHHHcchhHHHHHHHHHHHH
Confidence            479999999999853   345667778888899999999999998544

>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: gamma-glutamyl hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.27  E-value=0.0066  Score=47.01  Aligned_cols=49  Identities=16%  Similarity=0.228  Sum_probs=31.5

Q ss_pred             CccEEEEcCCCCc---cc-ccCChHHHHHHHHHHh--cCCeEEEEehhHHHHHhC
Q 027785           85 KYDGLVIPGGRAP---EY-LAMNDSVIDLVRKFSN--SGKTIASICHGQLILAAA  133 (219)
Q Consensus        85 ~~D~liipGG~~~---~~-~~~~~~l~~~l~~~~~--~~~~v~~ic~G~~~La~a  133 (219)
                      ..|.|++|||...   .. ....+.+.++......  +..||.+||.|.++|+.+
T Consensus        59 ~idGillpGG~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~PilGIC~G~Qll~~~  113 (288)
T d1l9xa_          59 SINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLL  113 (288)
T ss_dssp             HSSEEEECCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHHHHHHHH
T ss_pred             hcCCeEecCCCCCcccccccccchHHHHHHHHHHHhhCCCCeEEEcHHHHHHHHH
Confidence            5799999999642   11 1112334444444444  346999999999999764

>d1fyea_ c.23.16.4 (A:) Aspartyl dipeptidase PepE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Aspartyl dipeptidase PepE
domain: Aspartyl dipeptidase PepE
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.27  E-value=0.036  Score=41.21  Aligned_cols=50  Identities=10%  Similarity=0.160  Sum_probs=39.3

Q ss_pred             CCccEEEEcCCCCccc--ccCChHHHHHHHHHHhcCCeEEEEehhHHHHHhC
Q 027785           84 TKYDGLVIPGGRAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  133 (219)
Q Consensus        84 ~~~D~liipGG~~~~~--~~~~~~l~~~l~~~~~~~~~v~~ic~G~~~La~a  133 (219)
                      .+.|+|++.||.-...  ......+.+.|++.+++|+++++..+|+.++...
T Consensus        78 ~~ad~I~v~GGn~~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~v~~~~  129 (229)
T d1fyea_          78 EKAEIIIVGGGNTFQLLKESRERGLLAPMADRVKRGALYIGWSAGANLACPT  129 (229)
T ss_dssp             HHCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHHTSSB
T ss_pred             hhCCEEEEcCCCHHHHHHHHHhCCHHHHHHHHHHcCCeEEEeChhHhhcCcc
Confidence            3689999999864321  2234567889999999999999999999988743

>d1iowa1 c.30.1.2 (A:1-96) D-Ala-D-Ala ligase, N-domain {Escherichia coli, gene ddlB [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: D-Alanine ligase N-terminal domain
domain: D-Ala-D-Ala ligase, N-domain
species: Escherichia coli, gene ddlB [TaxId: 562]

Probab=88.33  E-value=1.8  Score=26.90  Aligned_cols=38  Identities=16%  Similarity=0.204  Sum_probs=29.2

Q ss_pred             CCEEEEEecCCCCchhh-----HHHHHHHHhCCCeEEEecCCC
Q 027785            8 KRSVLLLCGDYMEDYEA-----MVPFQALLAFGVSVDAACPGK   45 (219)
Q Consensus         8 ~~kv~il~~~g~~~~e~-----~~~~~~l~~ag~~v~~~s~~~   45 (219)
                      ++||+|+.--.-++.|+     ..+.+.|.+.++++..+.+..
T Consensus         2 ~~kI~vl~GG~S~E~~iSl~Sa~~v~~~L~~~~~~v~~i~~~~   44 (96)
T d1iowa1           2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE   44 (96)
T ss_dssp             CCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTT
T ss_pred             CceEEEEeCcCchhhHhHHhhHHHHHHHHHHcCeeEeeecCcc
Confidence            47899988665666666     567788889999998886654

>d1t0ba_ c.23.16.6 (A:) GK2113 homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: ThuA-like
domain: GK2113 homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.43  E-value=1.2  Score=32.62  Aligned_cols=73  Identities=19%  Similarity=0.180  Sum_probs=46.6

Q ss_pred             HHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCcccccCChH
Q 027785           26 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDS  105 (219)
Q Consensus        26 ~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~~~~~~  105 (219)
                      .+.+.|...|+++++...+..+                            ..+.+-...+||+||+-+-.+...  .++.
T Consensus        31 ~ia~~l~~~g~~v~tat~~e~~----------------------------~~~~~~~L~~~Dvli~~~~~~~~~--l~~~   80 (240)
T d1t0ba_          31 VIASYLAEAGFDAATAVLDEPE----------------------------HGLTDEVLDRCDVLVWWGHIAHDE--VKDE   80 (240)
T ss_dssp             HHHHHHHHTTCEEEEEESSSGG----------------------------GGCCHHHHHTCSEEEEECSSCGGG--SCHH
T ss_pred             HHHHHhhcCCceEEEEEecCcc----------------------------ccCCHHHHhcCCEEEEeCCCCCCc--CCHH
Confidence            5557788899999886544321                            001111235899999865333222  3456


Q ss_pred             HHHHHHHHHhcCCeEEEEehhHH
Q 027785          106 VIDLVRKFSNSGKTIASICHGQL  128 (219)
Q Consensus       106 l~~~l~~~~~~~~~v~~ic~G~~  128 (219)
                      -.+-|+++.++|+.++++-+|+.
T Consensus        81 q~~al~~~v~~G~G~VglH~a~~  103 (240)
T d1t0ba_          81 VVERVHRRVLEGMGLIVLHSGHF  103 (240)
T ss_dssp             HHHHHHHHHHTTCEEEEEGGGGG
T ss_pred             HHHHHHHHHHcCCCEEEEecCcC
Confidence            66677778889999999988864

>d1kwga3 c.23.16.5 (A:394-590) A4 beta-galactosidase middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: A4 beta-galactosidase middle domain
domain: A4 beta-galactosidase middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=85.22  E-value=1.7  Score=30.80  Aligned_cols=61  Identities=20%  Similarity=0.279  Sum_probs=40.9

Q ss_pred             hhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCccEEEEcCCCCccccc
Q 027785           22 YEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLA  101 (219)
Q Consensus        22 ~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~liipGG~~~~~~~  101 (219)
                      .++...+..|++.|+.+++++++.                                    +...|.+||+|+-.-.    
T Consensus        32 ~~~~~~Y~al~~~gv~vDiv~~~~------------------------------------dls~Yklvv~P~l~~~----   71 (197)
T d1kwga3          32 GLVYLFYSALRRLGLDVDVVPPGA------------------------------------SLRGYAFAVVPSLPIV----   71 (197)
T ss_dssp             HHHHHHHHHHHTTTCCEEEECTTS------------------------------------CCTTCSEEEESCCSSC----
T ss_pred             HHHHHHHHHHHHcCCceeecCCCC------------------------------------CcccCCEEEEcchHhC----
Confidence            466777889999999999997652                                    1247999999975432    


Q ss_pred             CChHHHHHHHHHHhcC-CeEEEEehh
Q 027785          102 MNDSVIDLVRKFSNSG-KTIASICHG  126 (219)
Q Consensus       102 ~~~~l~~~l~~~~~~~-~~v~~ic~G  126 (219)
                       ++   ++++++.++| +.|.+-.+|
T Consensus        72 -~~---~~l~~~v~~GG~lv~g~rsG   93 (197)
T d1kwga3          72 -RE---EALEAFREAEGPVLFGPRSG   93 (197)
T ss_dssp             -CH---HHHHHHHTCSSCEEECTTTT
T ss_pred             -CH---HHHHHHHHCCCEEEEeccCc
Confidence             23   2355566654 555555554

>d1u0ta_ e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycobacterium tuberculosis [TaxId: 1773]}

class: Multi-domain proteins (alpha and beta)
fold: NAD kinase/diacylglycerol kinase-like
superfamily: NAD kinase/diacylglycerol kinase-like
family: NAD kinase-like
domain: Inorganic polyphosphate/ATP-NAD kinase PpnK
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.28  E-value=1.8  Score=33.02  Aligned_cols=104  Identities=13%  Similarity=0.113  Sum_probs=52.4

Q ss_pred             CEEEEEecCCCCc--hhhHHHHHHHHhCCCeEEEecCCCCCCCCCCcccccCCCcceeccccCCccccccCccCCCCCCc
Q 027785            9 RSVLLLCGDYMED--YEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQTYSETRGHNFALNATFDEIDPTKY   86 (219)
Q Consensus         9 ~kv~il~~~g~~~--~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~   86 (219)
                      |||+|+..++-..  .-+......|...|.++.+.+.............       .-....+..+.... .+.....++
T Consensus         1 r~v~lv~~~~k~~a~~~a~~i~~~L~~~g~~v~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~   72 (302)
T d1u0ta_           1 RSVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAP-------DDMRAMGVEIEVVD-ADQHAADGC   72 (302)
T ss_dssp             CEEEEEESSSGGGGSHHHHHHHHHHHTTTCEEEEEC-------------------------------------------C
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEEecchhcccccccCc-------hhhhhcCccccccc-ccccccccc
Confidence            5888888654332  2345667788889999888765432100000000       00000011111111 111123579


Q ss_pred             cEEEEcCCCCcccccCChHHHHHHHHHHhcCCeEEEEehhHH
Q 027785           87 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL  128 (219)
Q Consensus        87 D~liipGG~~~~~~~~~~~l~~~l~~~~~~~~~v~~ic~G~~  128 (219)
                      |++|+.||.|        .++..++.+...+.||.+|-.|..
T Consensus        73 Dlvi~lGGDG--------T~L~a~~~~~~~~~PilGin~G~l  106 (302)
T d1u0ta_          73 ELVLVLGGDG--------TFLRAAELARNASIPVLGVNLGRI  106 (302)
T ss_dssp             CCEEEEECHH--------HHHHHHHHHHHHTCCEEEEECSSC
T ss_pred             cEEEEEcCCh--------HHHHHHHHhhccCCeEEEeCCCcc
Confidence            9999999855        466677777778999999999864