Citrus Sinensis ID: 027818

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQVSNDLLLPFSIRLLCWTWT
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccEEEEccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHcccHHHHHHHcHHHccHcHHHHHHHHHHHHHHHHHHHHHHHHHccccHEEHEEcccccccEEEcccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEccHHHHHHccHHHccccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEccc
Coil and Loop (DISEMBL)
msslrnalprrahkeraqpqsrkkfgllekHKDYVIRAKAYHKKEESIRRLKEKaafrnpdefYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHsldnnpssrhvyFAEDREEAKEIKsqsgrkdalpdfddipdhikRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQVSNDLLLPFSIRLLCWTWT
Flexible Loop (DISEMBL)
msslrnalprrahkeraqpqsrkkfgllekhkdYVIRakayhkkeesirrlkekaafrnpdefyfKMIKtktvdgvhrlEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTmlhsldnnpssRHVYFAEDREEAKeiksqsgrkdalpdfddipdhikrktaasyrelegrkKRVQELEKLYMDMSLHKelqvsndlllpFSIRLLCWTWT
Low Complexity Region (SEG)
MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQVSNDLLLPFSIRLLCWTWT
Disordered region (IsUnstruct)
**************************LLEKHKDYVIRAKAYHK*******L*EKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKL******************************************************************************LEKLYMDMSLHKELQVSNDLLLPFSIRLLCWTW*
Disordered Region (DISOPRED)
************************FGLLEKHKDYVIRAKAYHKKEES*********FRNPDEFYFKMI**************************KTQDIGYVLQ***************************VYFAEDRE*********************************************LEKLYM*********************LLCWTW*
Disordered Region (DISEMBL)
********************SRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAED**************DALPDFDDIPDHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQVSNDLLLPFSIRLLCWTWT
Disordered Region (DISPRO)
****************AQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQVSNDLLLPFSIRLLCWTWT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKxxxxxxxxxxxxxxxxxxxxxPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQVSNDLLLPFSIRLLCWTWT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	218	2.2.26 [Sep-21-2011]
Q8S1Z1	229	Probable U3 small nucleol	yes	no	0.912	0.868	0.713	8e-80
Q9M223	228	Probable U3 small nucleol	yes	no	0.908	0.868	0.643	8e-69
Q55C50	250	Probable U3 small nucleol	yes	no	0.876	0.764	0.400	4e-29
Q9CZJ1	253	Probable U3 small nucleol	yes	no	0.600	0.517	0.473	1e-26
Q9Y3A2	253	Probable U3 small nucleol	yes	no	0.614	0.529	0.448	3e-25
Q8R5K5	253	Probable U3 small nucleol	no	no	0.655	0.565	0.428	4e-25
Q10106	249	Probable U3 small nucleol	yes	no	0.646	0.566	0.427	1e-24
Q9W3C0	237	Probable U3 small nucleol	yes	no	0.628	0.578	0.404	2e-19
P34247	250	U3 small nucleolar RNA-as	yes	no	0.642	0.56	0.373	1e-16
A6ZZL7	250	U3 small nucleolar RNA-as	N/A	no	0.642	0.56	0.373	1e-16

>sp|Q8S1Z1|UTP11_ORYSJ Probable U3 small nucleolar RNA-associated protein 11 OS=Oryza sativa subsp. japonica GN=Os01g0810000 PE=2 SV=2

 Score =  296 bits (758), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 142/199 (71%), Positives = 176/199 (88%)

Query: 1   MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNP 60
           MSSLRNA+ RRAHKERAQP+SRKKFGLLEKHKDY++RAKA+H+KEE+IR+LKEKA+FRNP
Sbjct: 1   MSSLRNAIQRRAHKERAQPESRKKFGLLEKHKDYIVRAKAFHQKEETIRKLKEKASFRNP 60

Query: 61  DEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTML 120
           DEFYFKMI +KTVDG+HR + EANKYT++ELML+KT+D+GY+LQ +QSE+ KIEKL++ML
Sbjct: 61  DEFYFKMINSKTVDGIHRPKPEANKYTEDELMLLKTKDMGYILQGIQSEKKKIEKLSSML 120

Query: 121 HSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKK 180
           H LDN   ++HVYFAEDREE KEI+S+  +K +    D+IP  IKRKTA+SYRELE RK+
Sbjct: 121 HELDNKRPNKHVYFAEDREEVKEIQSRIEQKSSSLGLDNIPSRIKRKTASSYRELEERKQ 180

Query: 181 RVQELEKLYMDMSLHKELQ 199
           RVQ+LEKLY DM+L KEL+
Sbjct: 181 RVQKLEKLYADMALQKELK 199

Involved in nucleolar processing of pre-18S ribosomal RNA.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9M223|UTP11_ARATH Probable U3 small nucleolar RNA-associated protein 11 OS=Arabidopsis thaliana GN=At3g60360 PE=1 SV=1

 Score =  259 bits (663), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 128/199 (64%), Positives = 160/199 (80%), Gaps = 1/199 (0%)

Query: 1   MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNP 60
           MSSLRNA+PR AHKER+QP++RK+FG+LEKHKDY+IRA AYHKK+E+++ L++KAAF+NP
Sbjct: 1   MSSLRNAIPRPAHKERSQPEARKRFGILEKHKDYIIRANAYHKKQETLKILRQKAAFKNP 60

Query: 61  DEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTML 120
           DEF FKMI +KTVDG HR + E NKY+ EELM+MKTQDIGYV QK QSE+NKI+KLT  L
Sbjct: 61  DEFNFKMINSKTVDGRHRPKDEVNKYSAEELMIMKTQDIGYVFQKWQSEKNKIDKLTASL 120

Query: 121 HSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKK 180
               +  S RHVY+AEDREEA+E++ Q GR  +     +IP  IK+K   SYR+LEGRK 
Sbjct: 121 QCTGDQSSRRHVYYAEDREEARELEVQ-GRSKSDISTVEIPKDIKKKMDRSYRDLEGRKS 179

Query: 181 RVQELEKLYMDMSLHKELQ 199
           R ++LEKLY DMS+ KELQ
Sbjct: 180 RAKDLEKLYTDMSMQKELQ 198

Involved in nucleolar processing of pre-18S ribosomal RNA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q55C50|UTP11_DICDI Probable U3 small nucleolar RNA-associated protein 11 OS=Dictyostelium discoideum GN=utp11 PE=3 SV=1

 Score =  128 bits (321), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 91/227 (40%), Positives = 129/227 (56%), Gaps = 36/227 (15%)

Query: 1   MSS--LRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFR 58
           MSS  LR  LP+RA +ER QP+S KK G LE+ KDYV RAK Y+ K +++++LK +AAF+
Sbjct: 1   MSSMNLRRLLPQRAKQERPQPESSKKKGFLERKKDYVERAKDYNNKRDTLKKLKLQAAFK 60

Query: 59  NPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTT 118
           NPDEF +KMI +K VDGVH  E       +E+++ +KTQDI Y+  K +++  KIE+L  
Sbjct: 61  NPDEFNYKMISSKLVDGVHS-EISKTSLKKEQIIDIKTQDILYLQSKRRADDKKIERLQA 119

Query: 119 MLHSLDNN--PSSRHVYFAEDREEAKEIKSQSGRK--DALPD-----FDDIPDHIKRK-- 167
            L  +D+   P+ + +Y     ++ KE+K+ S  K  D +PD        IP   K K  
Sbjct: 120 TLQYMDSGLEPTEQIIYV----DDEKEVKNFSATKYFDTVPDAFNGSLSTIPKISKLKEG 175

Query: 168 ------------------TAASYRELEGRKKRVQELEKLYMDMSLHK 196
                             TA SY+EL+ RK R  +L K  MD+S  K
Sbjct: 176 SLVVNPKTAPTLGQLEAMTATSYKELKERKLRRDQLFKAEMDLSKSK 222

Involved in nucleolar processing of pre-18S ribosomal RNA.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9CZJ1|UTP11_MOUSE Probable U3 small nucleolar RNA-associated protein 11 OS=Mus musculus GN=Utp11l PE=2 SV=1

 Score =  119 bits (298), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 63/133 (47%), Positives = 88/133 (66%), Gaps = 2/133 (1%)

Query: 11  RAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKT 70
           R H+ER+QP  RK+ GLLEK KDY +RA  YHKK++ +R L++KA  +NPDEFY+KM + 
Sbjct: 14  REHRERSQPGFRKRLGLLEKKKDYKLRANDYHKKQDFLRALRKKALEKNPDEFYYKMTRA 73

Query: 71  KTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLD--NNPS 128
           K  DGVH  +    + T E+L LM+TQDI Y+  K  +E  KIE+L + LH LD      
Sbjct: 74  KLQDGVHIFKENKEEVTAEQLKLMRTQDIKYIEMKRVAEAKKIERLKSELHLLDFQGKQQ 133

Query: 129 SRHVYFAEDREEA 141
            +HV+F + ++E 
Sbjct: 134 KKHVFFFDTKKEV 146

Involved in nucleolar processing of pre-18S ribosomal RNA.

Mus musculus (taxid: 10090)

>sp|Q9Y3A2|UTP11_HUMAN Probable U3 small nucleolar RNA-associated protein 11 OS=Homo sapiens GN=UTP11L PE=1 SV=2

 Score =  115 bits (287), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 61/136 (44%), Positives = 90/136 (66%), Gaps = 2/136 (1%)

Query: 11  RAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKT 70
           R H+ER+QP  RK  GLLEK KDY +RA  Y KK+E ++ L++KA  +NPDEFY+KM + 
Sbjct: 14  REHRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLKALRKKALEKNPDEFYYKMTRV 73

Query: 71  KTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLD--NNPS 128
           K  DGVH ++    + T E+L LM+TQD+ Y+  K  +E  KIE+L + LH LD      
Sbjct: 74  KLQDGVHIIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDFQGKQQ 133

Query: 129 SRHVYFAEDREEAKEI 144
           ++HV+F + ++E ++ 
Sbjct: 134 NKHVFFFDTKKEVEQF 149

Involved in nucleolar processing of pre-18S ribosomal RNA.

Homo sapiens (taxid: 9606)

>sp|Q8R5K5|UTP11_RAT Probable U3 small nucleolar RNA-associated protein 11 OS=Rattus norvegicus GN=Utp11l PE=2 SV=1

 Score =  114 bits (286), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 63/147 (42%), Positives = 96/147 (65%), Gaps = 4/147 (2%)

Query: 2   SSLRNALP--RRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRN 59
           ++ R A+   +R ++ER+QP  RK  GLLEK KDY +RA  Y KK+E ++ L++KA  +N
Sbjct: 3   AAFRKAVKSRQREYRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLKALRKKALEKN 62

Query: 60  PDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTM 119
           PDEFY+KM + K  DGVH ++    + T E+L LM+TQD+ Y+  K  +E  KIE+L + 
Sbjct: 63  PDEFYYKMTRVKLQDGVHIIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSE 122

Query: 120 LHSLD--NNPSSRHVYFAEDREEAKEI 144
           LH LD      +RHV+F + ++E ++ 
Sbjct: 123 LHLLDFQGKQQNRHVFFFDTKKEVEQF 149

Involved in nucleolar processing of pre-18S ribosomal RNA.

Rattus norvegicus (taxid: 10116)

>sp|Q10106|UTP11_SCHPO Probable U3 small nucleolar RNA-associated protein 11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC18G6.06 PE=3 SV=1

 Score =  113 bits (282), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/145 (42%), Positives = 92/145 (63%), Gaps = 4/145 (2%)

Query: 2   SSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPD 61
           SS +NA  R+ H+ERAQP  R+K+GLLEK KDY  RA+ Y  K++ ++RL+EKA  RNPD
Sbjct: 3   SSFKNAGQRKNHRERAQPFERRKWGLLEKRKDYAQRAQDYKTKQKKLKRLREKALERNPD 62

Query: 62  EFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLH 121
           EFY +M   KT +GV   + E +    + + ++KTQDIG++      ER KI+ L   +H
Sbjct: 63  EFYHEMTHKKTKNGVPLEQREDSTIDMDTIKILKTQDIGWIRHHRNVERAKIDHLEQQMH 122

Query: 122 SL----DNNPSSRHVYFAEDREEAK 142
           ++    + N S +H  F ++ +EAK
Sbjct: 123 TVGAHRNKNESRKHTIFVDNVKEAK 147

Involved in nucleolar processing of pre-18S ribosomal RNA.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9W3C0|UTP11_DROME Probable U3 small nucleolar RNA-associated protein 11 OS=Drosophila melanogaster GN=CG1789 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/141 (40%), Positives = 86/141 (60%), Gaps = 4/141 (2%)

Query: 1   MSSLRNALP--RRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFR 58
           MSS +NA    ++ H+ER QP+SR+  G LEK KDY  RA    KK+++++ L  +A  +
Sbjct: 1   MSSWKNASKSNQKVHRERHQPESRQHLGFLEKKKDYKKRAIDAQKKQKTLKLLYRRAQNK 60

Query: 59  NPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTT 118
           NPDEFY  MI +K  +  H  +   +++T E+L LM+TQD+ YV+ K   ER KIE+L  
Sbjct: 61  NPDEFYHHMINSKLSNDEHHEKDTKDEHTPEQLALMQTQDLKYVVMKRTMERKKIERLKA 120

Query: 119 MLHSLD--NNPSSRHVYFAED 137
            L  +D     +++ + F ED
Sbjct: 121 SLVDVDAIKGAANKRIKFDED 141

Involved in nucleolar processing of pre-18S ribosomal RNA.

Drosophila melanogaster (taxid: 7227)

>sp|P34247|UTP11_YEAST U3 small nucleolar RNA-associated protein 11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UTP11 PE=1 SV=2

 Score = 86.7 bits (213), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 83/150 (55%), Gaps = 10/150 (6%)

Query: 1   MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNP 60
           M+ L + + ++ H+ER+Q  SR ++G LEKHKDYV RA+ +H+K+ +++ L+EKA  RNP
Sbjct: 1   MAKLVHDVQKKQHRERSQLTSRSRYGFLEKHKDYVKRAQDFHRKQSTLKVLREKAKERNP 60

Query: 61  DEFYFKMIKTKT------VDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIE 114
           DE+Y  M   KT      +   H  E E    + +++ L+KTQD  YV    Q E  K+E
Sbjct: 61  DEYYHAMHSRKTDAKGLLISSRHGDE-EDESLSMDQVKLLKTQDSNYVRTLRQIELKKLE 119

Query: 115 KLTTMLHSLDNNPSSRHVYFAEDREEAKEI 144
           K    L       S  H  F + RE+  E 
Sbjct: 120 KGAKQLMF---KSSGNHTIFVDSREKMNEF 146

Involved in nucleolar processing of pre-18S ribosomal RNA.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|A6ZZL7|UTP11_YEAS7 U3 small nucleolar RNA-associated protein 11 OS=Saccharomyces cerevisiae (strain YJM789) GN=UTP11 PE=3 SV=1

 Score = 86.7 bits (213), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 83/150 (55%), Gaps = 10/150 (6%)

Query: 1   MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNP 60
           M+ L + + ++ H+ER+Q  SR ++G LEKHKDYV RA+ +H+K+ +++ L+EKA  RNP
Sbjct: 1   MAKLVHDVQKKQHRERSQLTSRSRYGFLEKHKDYVKRAQDFHRKQSTLKVLREKAKERNP 60

Query: 61  DEFYFKMIKTKT------VDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIE 114
           DE+Y  M   KT      +   H  E E    + +++ L+KTQD  YV    Q E  K+E
Sbjct: 61  DEYYHAMHSRKTDAKGLLISSRHGDE-EDESLSMDQVKLLKTQDSNYVRTLRQIELKKLE 119

Query: 115 KLTTMLHSLDNNPSSRHVYFAEDREEAKEI 144
           K    L       S  H  F + RE+  E 
Sbjct: 120 KGAKQLMF---KSSGNHTIFVDSREKMNEF 146

Involved in nucleolar processing of pre-18S ribosomal RNA.

Saccharomyces cerevisiae (strain YJM789) (taxid: 307796)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
147857564	229	hypothetical protein VITISV_023155 [Viti	0.986	0.938	0.699	4e-86
225439057	229	PREDICTED: probable U3 small nucleolar R	0.912	0.868	0.768	4e-86
255553233	231	U3 small nucleolar RNA-associated protei	0.986	0.930	0.672	6e-84
224137520	229	predicted protein [Populus trichocarpa]	0.986	0.938	0.686	3e-83
115440601	229	Os01g0810000 [Oryza sativa Japonica Grou	0.912	0.868	0.713	4e-78
413952156	232	U3 small nucleolar RNA-associated protei	0.912	0.857	0.693	1e-77
242059027	232	hypothetical protein SORBIDRAFT_03g03760	0.912	0.857	0.688	2e-77
356524892	229	PREDICTED: probable U3 small nucleolar R	0.986	0.938	0.636	3e-77
449470253	228	PREDICTED: probable U3 small nucleolar R	0.899	0.859	0.710	9e-77
388510862	229	unknown [Lotus japonicus]	0.912	0.868	0.708	7e-74

>gi|147857564|emb|CAN82884.1| hypothetical protein VITISV_023155 [Vitis vinifera]

 Score =  323 bits (827), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 156/223 (69%), Positives = 187/223 (83%), Gaps = 8/223 (3%)

Query: 1   MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNP 60
           MSS RNA+ RRA+KERAQP  RKKFGLLEKHKDYV+RA+A+HKKEE++++LKEKAAFRNP
Sbjct: 1   MSSFRNAISRRAYKERAQPHLRKKFGLLEKHKDYVVRAQAFHKKEEALQKLKEKAAFRNP 60

Query: 61  DEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTML 120
           DEFYFKMIKT+TVDGVHR E +ANKY+ EELMLMKTQD+GYVLQK+QSE+ KIEKLT ML
Sbjct: 61  DEFYFKMIKTRTVDGVHRPESQANKYSPEELMLMKTQDMGYVLQKVQSEKKKIEKLTAML 120

Query: 121 HSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKK 180
           HSLDN P++RHVY+AEDREEA+EI++QS R   LP  DD+P+HIKRKT+ASYRELE RK 
Sbjct: 121 HSLDNQPTNRHVYYAEDREEAREIQAQSSRGGNLPSLDDVPNHIKRKTSASYRELETRKS 180

Query: 181 RVQELEKLYMDMSLHKELQV--------SNDLLLPFSIRLLCW 215
           RV +LEKLYMDM+L KELQ          ++++ P S  +  W
Sbjct: 181 RVNDLEKLYMDMALQKELQKRGRKRKLREDEIVCPTSKPVYKW 223

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439057|ref|XP_002265743.1| PREDICTED: probable U3 small nucleolar RNA-associated protein 11 [Vitis vinifera] gi|239056174|emb|CAQ58608.1| unknown gene [Vitis vinifera] gi|239056194|emb|CAQ58632.1| unknown protein / putative CGI-94 protein [Vitis vinifera] gi|296085811|emb|CBI31135.3| unnamed protein product [Vitis vinifera]

 Score =  323 bits (827), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 153/199 (76%), Positives = 179/199 (89%)

Query: 1   MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNP 60
           MSS RNA+ RRA+KERAQP  RKKFGLLEKHKDYV+RA+A+HKKEE++++LKEKAAFRNP
Sbjct: 1   MSSFRNAISRRAYKERAQPHLRKKFGLLEKHKDYVVRAQAFHKKEEALQKLKEKAAFRNP 60

Query: 61  DEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTML 120
           DEFYFKMIKT+TVDGVHR E +ANKY+ EELMLMKTQD+GYVLQK+QSE+ KIEKLT ML
Sbjct: 61  DEFYFKMIKTRTVDGVHRPESQANKYSPEELMLMKTQDMGYVLQKVQSEKKKIEKLTAML 120

Query: 121 HSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKK 180
           HSLDN P++RHVY+AEDREEA+EI++QS R   LP  DD+P+HIKRKT+ASYRELE RK 
Sbjct: 121 HSLDNQPTNRHVYYAEDREEAREIQAQSSRGGNLPSLDDVPNHIKRKTSASYRELETRKN 180

Query: 181 RVQELEKLYMDMSLHKELQ 199
           RV +LEKLYMDM+L KELQ
Sbjct: 181 RVNDLEKLYMDMALQKELQ 199

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553233|ref|XP_002517659.1| U3 small nucleolar RNA-associated protein, putative [Ricinus communis] gi|223543291|gb|EEF44823.1| U3 small nucleolar RNA-associated protein, putative [Ricinus communis]

 Score =  315 bits (808), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 150/223 (67%), Positives = 184/223 (82%), Gaps = 8/223 (3%)

Query: 1   MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNP 60
           MSSLRNA+PR+AHKER+QPQSRKK+GLLEKHKDY++RAKA+HKKEE+++RLKEKAAFRNP
Sbjct: 1   MSSLRNAIPRKAHKERSQPQSRKKYGLLEKHKDYIVRAKAFHKKEEALQRLKEKAAFRNP 60

Query: 61  DEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTML 120
           DEFYFKMIKT+TVDGVHR E +ANKYT+EEL+LMKTQDIGY+LQKLQSE+ KIEKLT  L
Sbjct: 61  DEFYFKMIKTRTVDGVHRPESQANKYTEEELLLMKTQDIGYILQKLQSEKKKIEKLTATL 120

Query: 121 HSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKK 180
           HSL N PS+RH+Y+ EDREEAKE++SQS   + +P  + +P+ IKRK  +SYRELE RKK
Sbjct: 121 HSLKNQPSNRHIYYVEDREEAKELRSQSSANEIVPALEHVPEQIKRKMNSSYRELEARKK 180

Query: 181 RVQELEKLYMDMSLHKELQV--------SNDLLLPFSIRLLCW 215
           R  +LEKLY DM+L KELQ          ++++ P S  +  W
Sbjct: 181 RANQLEKLYADMALQKELQKKGKKRKLREDEIVCPTSKPIYKW 223

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137520|ref|XP_002322578.1| predicted protein [Populus trichocarpa] gi|222867208|gb|EEF04339.1| predicted protein [Populus trichocarpa]

 Score =  313 bits (803), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 153/223 (68%), Positives = 180/223 (80%), Gaps = 8/223 (3%)

Query: 1   MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNP 60
           MSSLRNA+PR+AHKERAQPQ+RKKFGLLEKHKDYV RAKA+HKKEE++RRLKEKAA RNP
Sbjct: 1   MSSLRNAIPRKAHKERAQPQARKKFGLLEKHKDYVARAKAFHKKEETLRRLKEKAASRNP 60

Query: 61  DEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTML 120
           DEFYF MIK+KTVDGVHR + EANKYTQEEL+LMKTQDIGY+LQK QSE+ KIEKLT  L
Sbjct: 61  DEFYFGMIKSKTVDGVHRPQSEANKYTQEELLLMKTQDIGYILQKAQSEKKKIEKLTATL 120

Query: 121 HSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKK 180
           HSLD  PSS+H+YFAEDREEAKEI+S+S          D+PD+IKRK A+SYRELE RK 
Sbjct: 121 HSLDGRPSSKHIYFAEDREEAKEIRSRSSENKMATTSVDVPDNIKRKIASSYRELEARKN 180

Query: 181 RVQELEKLYMDMSLHKELQV--------SNDLLLPFSIRLLCW 215
           R  +LEK+YMDM+L KELQ          ++++ P +  +  W
Sbjct: 181 RANQLEKIYMDMALQKELQKKGRKRKLREDEIVCPTTKPVFKW 223

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115440601|ref|NP_001044580.1| Os01g0810000 [Oryza sativa Japonica Group] gi|73621302|sp|Q8S1Z1.2|UTP11_ORYSJ RecName: Full=Probable U3 small nucleolar RNA-associated protein 11; Short=U3 snoRNA-associated protein 11 gi|55297663|dbj|BAD68234.1| putative CGI-94 protein [Oryza sativa Japonica Group] gi|55297664|dbj|BAD68235.1| putative CGI-94 protein [Oryza sativa Japonica Group] gi|113534111|dbj|BAF06494.1| Os01g0810000 [Oryza sativa Japonica Group] gi|215717047|dbj|BAG95410.1| unnamed protein product [Oryza sativa Japonica Group] gi|215767926|dbj|BAH00155.1| unnamed protein product [Oryza sativa Japonica Group] gi|218189251|gb|EEC71678.1| hypothetical protein OsI_04152 [Oryza sativa Indica Group] gi|222619423|gb|EEE55555.1| hypothetical protein OsJ_03819 [Oryza sativa Japonica Group]

 Score =  296 bits (758), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 142/199 (71%), Positives = 176/199 (88%)

Query: 1   MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNP 60
           MSSLRNA+ RRAHKERAQP+SRKKFGLLEKHKDY++RAKA+H+KEE+IR+LKEKA+FRNP
Sbjct: 1   MSSLRNAIQRRAHKERAQPESRKKFGLLEKHKDYIVRAKAFHQKEETIRKLKEKASFRNP 60

Query: 61  DEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTML 120
           DEFYFKMI +KTVDG+HR + EANKYT++ELML+KT+D+GY+LQ +QSE+ KIEKL++ML
Sbjct: 61  DEFYFKMINSKTVDGIHRPKPEANKYTEDELMLLKTKDMGYILQGIQSEKKKIEKLSSML 120

Query: 121 HSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKK 180
           H LDN   ++HVYFAEDREE KEI+S+  +K +    D+IP  IKRKTA+SYRELE RK+
Sbjct: 121 HELDNKRPNKHVYFAEDREEVKEIQSRIEQKSSSLGLDNIPSRIKRKTASSYRELEERKQ 180

Query: 181 RVQELEKLYMDMSLHKELQ 199
           RVQ+LEKLY DM+L KEL+
Sbjct: 181 RVQKLEKLYADMALQKELK 199

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413952156|gb|AFW84805.1| U3 small nucleolar RNA-associated protein 11 [Zea mays]

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 138/199 (69%), Positives = 173/199 (86%)

Query: 1   MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNP 60
           MSSLRNA+PRRAHKERAQP++RKKFGLLEKHKDYV+RA+AYH KE +I +LKEKAAFRNP
Sbjct: 1   MSSLRNAIPRRAHKERAQPEARKKFGLLEKHKDYVVRARAYHIKEATIAKLKEKAAFRNP 60

Query: 61  DEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTML 120
           DEFYFKMI ++TV G+HR + E NKYT+EEL+L+K +D+GY+LQ +QSE+ KIEKL++ L
Sbjct: 61  DEFYFKMINSRTVGGIHRPKPEDNKYTEEELLLLKNKDMGYILQSVQSEKKKIEKLSSTL 120

Query: 121 HSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKK 180
           H LDN P ++HVYFAEDREEAKEI+S+ G+   +PD D+IP  IK+K A+SYRELE RK+
Sbjct: 121 HELDNKPQNKHVYFAEDREEAKEIQSRIGQSSNMPDLDNIPSRIKKKIASSYRELEERKQ 180

Query: 181 RVQELEKLYMDMSLHKELQ 199
           R+Q+LEKLY DM+L KEL+
Sbjct: 181 RLQKLEKLYADMALQKELK 199

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242059027|ref|XP_002458659.1| hypothetical protein SORBIDRAFT_03g037600 [Sorghum bicolor] gi|241930634|gb|EES03779.1| hypothetical protein SORBIDRAFT_03g037600 [Sorghum bicolor]

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 137/199 (68%), Positives = 174/199 (87%)

Query: 1   MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNP 60
           MSSLRNA+PRRAHKER+QP++RKKFGLLEKHKDYV+RA+AYH KE +I +LKEKAAFRNP
Sbjct: 1   MSSLRNAIPRRAHKERSQPEARKKFGLLEKHKDYVVRARAYHIKEATIAKLKEKAAFRNP 60

Query: 61  DEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTML 120
           DEFYFKMI ++TV G+HR + E NKYT+EEL+L+K +D+GY+LQ +QSE+ KIEKL++ L
Sbjct: 61  DEFYFKMINSRTVGGIHRPKPEDNKYTEEELLLLKNKDMGYILQSIQSEKKKIEKLSSTL 120

Query: 121 HSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKK 180
           H LDN P ++HVYFAEDREEAKEI+S+ G+ + +P  D+IP  IK+KTA+SYRELE RK+
Sbjct: 121 HELDNKPQNKHVYFAEDREEAKEIQSRIGQSNNMPGLDNIPSRIKKKTASSYRELEERKQ 180

Query: 181 RVQELEKLYMDMSLHKELQ 199
           R+Q+LEKLY DM+L KEL+
Sbjct: 181 RLQKLEKLYADMALQKELK 199

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524892|ref|XP_003531062.1| PREDICTED: probable U3 small nucleolar RNA-associated protein 11-like [Glycine max]

 Score =  293 bits (750), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 142/223 (63%), Positives = 180/223 (80%), Gaps = 8/223 (3%)

Query: 1   MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNP 60
           MSSLRNA+PRRAHKER+QP SRKKFGLLEKHKDY+ RAKA+HKKE+++R+L+EKAA RN 
Sbjct: 1   MSSLRNAIPRRAHKERSQPSSRKKFGLLEKHKDYIQRAKAFHKKEDTLRKLREKAANRNE 60

Query: 61  DEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTML 120
           DEFYFKM++TKTVDGVH+ E EANKYTQEELMLMKTQD+GY+LQK+QSERNKIE+LT  L
Sbjct: 61  DEFYFKMVRTKTVDGVHKPESEANKYTQEELMLMKTQDMGYILQKIQSERNKIERLTASL 120

Query: 121 HSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKK 180
           HS+DN P+++HV+FAEDREEAKE++S+  +        DIP  IKRKT  SY+ELE R+ 
Sbjct: 121 HSIDNQPANKHVFFAEDREEAKELESRHQKSKIPLTSGDIPAGIKRKTDRSYQELEARRG 180

Query: 181 RVQELEKLYMDMSLHKELQV--------SNDLLLPFSIRLLCW 215
           R+ +LEK+YMDM++ KELQ          ++++ P +  +  W
Sbjct: 181 RLSQLEKIYMDMTMQKELQKKGRKRKLREDEIVCPTTKPVYMW 223

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470253|ref|XP_004152832.1| PREDICTED: probable U3 small nucleolar RNA-associated protein 11-like [Cucumis sativus] gi|449477691|ref|XP_004155095.1| PREDICTED: probable U3 small nucleolar RNA-associated protein 11-like [Cucumis sativus]

 Score =  291 bits (746), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 140/197 (71%), Positives = 169/197 (85%), Gaps = 1/197 (0%)

Query: 1   MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNP 60
           MSSLRNA+PRR +KERAQPQSRKKFGLLEKHKDY+ RAKA+HKKE+++R+LKEKAAF+NP
Sbjct: 1   MSSLRNAVPRRPYKERAQPQSRKKFGLLEKHKDYIQRAKAFHKKEDTLRKLKEKAAFKNP 60

Query: 61  DEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTML 120
           DEFYFKMI+T+TVDGVH+ E   NKYT E+LMLMKTQD GY+LQK+QSE+ KIEKLT  L
Sbjct: 61  DEFYFKMIRTRTVDGVHKPESHVNKYTAEQLMLMKTQDAGYILQKMQSEKKKIEKLTATL 120

Query: 121 HSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKK 180
           HSLDN PS++H+YFAEDREEA EI S+S  K  +   + +PD I+RKT +SY+ELE R+ 
Sbjct: 121 HSLDNQPSNKHLYFAEDREEANEILSRSS-KGLVASSEAVPDSIRRKTISSYKELEARRS 179

Query: 181 RVQELEKLYMDMSLHKE 197
           RV ELEKLYMDM+L +E
Sbjct: 180 RVNELEKLYMDMTLQQE 196

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510862|gb|AFK43497.1| unknown [Lotus japonicus]

 Score =  282 bits (721), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 141/199 (70%), Positives = 167/199 (83%)

Query: 1   MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNP 60
           MSSLRNALPRRAHKERAQP SRKKFG LEKHKDYV RAKA+HKKEE++R L+EKAA RN 
Sbjct: 1   MSSLRNALPRRAHKERAQPSSRKKFGHLEKHKDYVERAKAFHKKEETLRILREKAANRNQ 60

Query: 61  DEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTML 120
           DEFYFKMI+T+T DGVHR E EANKYTQ+ELMLMKTQD+GYVLQKLQSER KIEKL   L
Sbjct: 61  DEFYFKMIRTRTEDGVHRPESEANKYTQDELMLMKTQDLGYVLQKLQSERKKIEKLAASL 120

Query: 121 HSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKK 180
           HS+DN P+++H+ FAEDREEAKE++SQ  R +     D+I  +IKRK   SY+ELE R+ 
Sbjct: 121 HSIDNQPTNKHILFAEDREEAKELQSQYSRSEIPLISDNIHTNIKRKIDRSYKELEARRT 180

Query: 181 RVQELEKLYMDMSLHKELQ 199
           R+ +L+K+YMDMS+ KEL+
Sbjct: 181 RLSQLQKMYMDMSMKKELR 199

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
TAIR|locus:2103356	228	EDA14 "EMBRYO SAC DEVELOPMENT	0.908	0.868	0.638	2.5e-65
UNIPROTKB|E1BU24	253	UTP11L "Uncharacterized protei	0.614	0.529	0.492	1.6e-31
MGI|MGI:1914455	253	Utp11l "UTP11-like, U3 small n	0.876	0.754	0.37	1.6e-29
ZFIN|ZDB-GENE-030131-8093	250	utp11l "UTP11-like, U3 small n	0.651	0.568	0.479	1.6e-29
UNIPROTKB|F1N165	253	UTP11L "Uncharacterized protei	0.683	0.588	0.434	7.1e-29
DICTYBASE|DDB_G0270230	250	utp11 "U3 snoRNP protein" [Dic	0.889	0.776	0.396	1.5e-28
UNIPROTKB|B4DJC6	148	UTP11L "Probable U3 small nucl	0.605	0.891	0.462	1.5e-28
UNIPROTKB|Q9Y3A2	253	UTP11L "Probable U3 small nucl	0.825	0.711	0.368	1.5e-28
UNIPROTKB|F1SV29	253	UTP11L "Uncharacterized protei	0.683	0.588	0.421	1.9e-28
RGD|621412	253	Utp11l "UTP11-like, U3 small n	0.825	0.711	0.368	3.1e-28

TAIR|locus:2103356 EDA14 "EMBRYO SAC DEVELOPMENT ARREST 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
 Identities = 127/199 (63%), Positives = 159/199 (79%)

Query:     1 MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNP 60
             MSSLRNA+PR AHKER+QP++RK+FG+LEKHKDY+IRA AYHKK+E+++ L++KAAF+NP
Sbjct:     1 MSSLRNAIPRPAHKERSQPEARKRFGILEKHKDYIIRANAYHKKQETLKILRQKAAFKNP 60

Query:    61 DEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTML 120
             DEF FKMI +KTVDG HR + E NKY+ EELM+MKTQDIGYV QK QSE+NKI+KLT  L
Sbjct:    61 DEFNFKMINSKTVDGRHRPKDEVNKYSAEELMIMKTQDIGYVFQKWQSEKNKIDKLTASL 120

Query:   121 HSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKK 180
                 +  S RHVY+AEDREEA+E++ Q   K  +   + IP  IK+K   SYR+LEGRK 
Sbjct:   121 QCTGDQSSRRHVYYAEDREEARELEVQGRSKSDISTVE-IPKDIKKKMDRSYRDLEGRKS 179

Query:   181 RVQELEKLYMDMSLHKELQ 199
             R ++LEKLY DMS+ KELQ
Sbjct:   180 RAKDLEKLYTDMSMQKELQ 198

GO:0005634 "nucleus" evidence=ISM

GO:0006364 "rRNA processing" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0009561 "megagametogenesis" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0000741 "karyogamy" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

UNIPROTKB|E1BU24 UTP11L "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 67/136 (49%), Positives = 96/136 (70%)

Query:    10 RRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIK 69
             +R H+ERAQP  RKK GLLEK KDY +RA+ YHKK+ ++R L++KA  +NPDEFYFKMI+
Sbjct:    13 QRQHRERAQPACRKKLGLLEKKKDYRLRAQDYHKKQNALRALQKKALDKNPDEFYFKMIR 72

Query:    70 TKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLD--NNP 127
             T+  DGVH ++   ++ T E++ LMKTQD+ YV  K  +E  KIE+L + LH LD     
Sbjct:    73 TQLKDGVHVIKQPEDEVTPEQMKLMKTQDLKYVEMKRVAEAKKIERLKSELHLLDVEGKQ 132

Query:   128 SSRHVYFAEDREEAKE 143
              ++H +F + ++E +E
Sbjct:   133 PNKHTFFFDTKKEVQE 148

GO:0006364 "rRNA processing" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=IEA

MGI|MGI:1914455 Utp11l "UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)" [Mus musculus (taxid:10090)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 74/200 (37%), Positives = 114/200 (57%)

Query:    10 RRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIK 69
             +R H+ER+QP  RK+ GLLEK KDY +RA  YHKK++ +R L++KA  +NPDEFY+KM +
Sbjct:    13 QREHRERSQPGFRKRLGLLEKKKDYKLRANDYHKKQDFLRALRKKALEKNPDEFYYKMTR 72

Query:    70 TKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLD--NNP 127
              K  DGVH  +    + T E+L LM+TQDI Y+  K  +E  KIE+L + LH LD     
Sbjct:    73 AKLQDGVHIFKENKEEVTAEQLKLMRTQDIKYIEMKRVAEAKKIERLKSELHLLDFQGKQ 132

Query:   128 SSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYR-----ELEGRKKRV 182
               +HV+F + ++E +     +  + A    D + +  + +T    R        G K+  
Sbjct:   133 QKKHVFFFDTKKEVERFDVATHLQTAPELVDRVYNRPRIETLQKERVKGATPQTGLKRIA 192

Query:   183 QELEKLY--MDMSLHKELQV 200
             +E +K Y  +   + +E Q+
Sbjct:   193 KERQKQYDCLTQRIEREKQL 212

GO:0003674 "molecular_function" evidence=ND

GO:0005615 "extracellular space" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006364 "rRNA processing" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=ISO

GO:0007399 "nervous system development" evidence=ISO

GO:0032040 "small-subunit processome" evidence=IEA

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=ISO

ZFIN|ZDB-GENE-030131-8093 utp11l "UTP11-like, U3 small nucleolar ribonucleoprotein (yeast)" [Danio rerio (taxid:7955)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 69/144 (47%), Positives = 94/144 (65%)

Query:     1 MSSLRNALP--RRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFR 58
             MSS R AL   +R HKER+Q   RK  GLLEK KDY +RA  YH+KE++I  L++KA  +
Sbjct:     1 MSSFRKALKSKQRDHKERSQLGFRKHLGLLEKKKDYKLRADDYHRKEKTILALRKKAMDK 60

Query:    59 NPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTT 118
             NPDEF FKMI  +  DGVH    +  + T+E+  +M+TQDI YV  K  SE  KIE++ +
Sbjct:    61 NPDEFNFKMIHNQLKDGVHMAIRKDEEMTEEQKKVMRTQDIRYVEMKRVSEMKKIERMKS 120

Query:   119 MLHSLDNNPSSRHVYFAEDREEAK 142
              LH LD    ++HV+F + ++E K
Sbjct:   121 ELHFLDEKKKNKHVFFLDTKKEVK 144

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1N165 UTP11L "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 66/152 (43%), Positives = 96/152 (63%)

Query:    10 RRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIK 69
             +R H+ER+QP  RK  GLLEK KDY +RA  Y KK+E +R L++KA  +NPDEFY+KM +
Sbjct:    13 QREHRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLRALRKKALEKNPDEFYYKMTR 72

Query:    70 TKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLD--NNP 127
              K  DGVH ++    + T E+L LM+TQDI Y+  K  +E  KIE+L   LH LD     
Sbjct:    73 VKLQDGVHVIKETKEEVTPEQLKLMRTQDIKYIEMKRVAEAKKIERLKAELHLLDFQGKQ 132

Query:   128 SSRHVYFAEDREEAKEIKSQSGRKDALPDFDD 159
              ++HV+F + ++E ++    +  + A P+  D
Sbjct:   133 QNKHVFFFDTKKEVEQFDIATHLRTA-PELVD 163

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

DICTYBASE|DDB_G0270230 utp11 "U3 snoRNP protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 82/207 (39%), Positives = 123/207 (59%)

Query:     1 MSS--LRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFR 58
             MSS  LR  LP+RA +ER QP+S KK G LE+ KDYV RAK Y+ K +++++LK +AAF+
Sbjct:     1 MSSMNLRRLLPQRAKQERPQPESSKKKGFLERKKDYVERAKDYNNKRDTLKKLKLQAAFK 60

Query:    59 NPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTT 118
             NPDEF +KMI +K VDGVH  E       +E+++ +KTQDI Y+  K +++  KIE+L  
Sbjct:    61 NPDEFNYKMISSKLVDGVHS-EISKTSLKKEQIIDIKTQDILYLQSKRRADDKKIERLQA 119

Query:   119 MLHSLDNN--PSSRHVYFAEDREEAKEIKSQSGRK--DALPD-FDDIPDHIKRKTAASYR 173
              L  +D+   P+ + +Y     ++ KE+K+ S  K  D +PD F+     I + +     
Sbjct:   120 TLQYMDSGLEPTEQIIYV----DDEKEVKNFSATKYFDTVPDAFNGSLSTIPKISKLKEG 175

Query:   174 ELEGRKKRVQELEKLY-MDMSLHKELQ 199
              L    K    L +L  M  + +KEL+
Sbjct:   176 SLVVNPKTAPTLGQLEAMTATSYKELK 202

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0030515 "snoRNA binding" evidence=ISS

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|B4DJC6 UTP11L "Probable U3 small nucleolar RNA-associated protein 11" [Homo sapiens (taxid:9606)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 62/134 (46%), Positives = 90/134 (67%)

Query:    10 RRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIK 69
             +R H+ER+QP  RK  GLLEK KDY +RA  Y KK+E ++ L++KA  +NPDEFY+KM +
Sbjct:    13 QREHRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLKALRKKALEKNPDEFYYKMTR 72

Query:    70 TKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLD--NNP 127
              K  DGVH ++    + T E+L LM+TQD+ Y+  K  +E  KIE+L + LH LD     
Sbjct:    73 VKLQDGVHIIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDFQGKQ 132

Query:   128 SSRHVYFAEDREEA 141
              ++HV+F + ++EA
Sbjct:   133 QNKHVFFFDTKKEA 146

GO:0006364 "rRNA processing" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

UNIPROTKB|Q9Y3A2 UTP11L "Probable U3 small nucleolar RNA-associated protein 11" [Homo sapiens (taxid:9606)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 69/187 (36%), Positives = 110/187 (58%)

Query:    10 RRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIK 69
             +R H+ER+QP  RK  GLLEK KDY +RA  Y KK+E ++ L++KA  +NPDEFY+KM +
Sbjct:    13 QREHRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLKALRKKALEKNPDEFYYKMTR 72

Query:    70 TKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLD--NNP 127
              K  DGVH ++    + T E+L LM+TQD+ Y+  K  +E  KIE+L + LH LD     
Sbjct:    73 VKLQDGVHIIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDFQGKQ 132

Query:   128 SSRHVYFAEDREEAKEIKSQSGRKDALPDFDDI---P--DHIKRKTAASYRELEGRKKRV 182
              ++HV+F + ++E ++    +  + A    D +   P  + ++++         G K+  
Sbjct:   133 QNKHVFFFDTKKEVEQFDVATHLQTAPELVDRVFNRPRIETLQKEKVKGVTNQTGLKRIA 192

Query:   183 QELEKLY 189
             +E +K Y
Sbjct:   193 KERQKQY 199

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006917 "induction of apoptosis" evidence=IMP

GO:0007399 "nervous system development" evidence=IMP

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005615 "extracellular space" evidence=IDA

UNIPROTKB|F1SV29 UTP11L "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 64/152 (42%), Positives = 96/152 (63%)

Query:    10 RRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIK 69
             +R H+ER+QP  RK  GLLEK KDY +RA  Y  K+E +R L++KA  +NPDEFY+KM +
Sbjct:    13 QREHRERSQPSFRKHLGLLEKKKDYKLRADDYRHKQEYLRALRKKALEKNPDEFYYKMTR 72

Query:    70 TKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLD--NNP 127
              K  DGVH ++    + T E+L LM+TQD+ Y+  K  +E  KIE+L + LH LD     
Sbjct:    73 VKLQDGVHVIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDFQGKQ 132

Query:   128 SSRHVYFAEDREEAKEIKSQSGRKDALPDFDD 159
              ++HV+F + ++E ++    +  + A P+  D
Sbjct:   133 QNKHVFFFDTKKEVEQFDIATHLRTA-PELVD 163

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

RGD|621412 Utp11l "UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 69/187 (36%), Positives = 110/187 (58%)

Query:    10 RRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIK 69
             +R ++ER+QP  RK  GLLEK KDY +RA  Y KK+E ++ L++KA  +NPDEFY+KM +
Sbjct:    13 QREYRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLKALRKKALEKNPDEFYYKMTR 72

Query:    70 TKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLD--NNP 127
              K  DGVH ++    + T E+L LM+TQD+ Y+  K  +E  KIE+L + LH LD     
Sbjct:    73 VKLQDGVHIIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDFQGKQ 132

Query:   128 SSRHVYFAEDREEAKEIKSQSGRKDALPDFDDI---P--DHIKRKTAASYRELEGRKKRV 182
              +RHV+F + ++E ++    +  + A    D +   P  + ++++         G K+  
Sbjct:   133 QNRHVFFFDTKKEVEQFDVAAHLQTAPELVDRVFNRPRIETLQKEKVKGVTNQTGLKRIA 192

Query:   183 QELEKLY 189
             +E +K Y
Sbjct:   193 KERQKQY 199

GO:0005615 "extracellular space" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0006364 "rRNA processing" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M223	UTP11_ARATH	No assigned EC number	0.6432	0.9082	0.8684	yes	no
Q8S1Z1	UTP11_ORYSJ	No assigned EC number	0.7135	0.9128	0.8689	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	218
pfam03998	239	pfam03998, Utp11, Utp11 protein	2e-57
COG5223	240	COG5223, COG5223, Uncharacterized conserved protei	5e-24

>gnl|CDD|217834 pfam03998, Utp11, Utp11 protein

 Score =  181 bits (461), Expect = 2e-57
 Identities = 88/211 (41%), Positives = 120/211 (56%), Gaps = 21/211 (9%)

Query: 10  RRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIK 69
           RR H+ER+QP+SRK  GLLEK KDY +RAK YHKKE++++ LKEKAA RNPDEFYF MI 
Sbjct: 1   RRQHRERSQPESRKHLGLLEKKKDYKLRAKDYHKKEKTLKALKEKAAERNPDEFYFGMIS 60

Query: 70  TKTVDGVHRLE-GEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNN-P 127
           +KT DGVH L+  E    ++E++ L+KTQD+ YV  K Q+E  KIEKL   LH  D+   
Sbjct: 61  SKTDDGVHILKREEKEVLSKEQVKLLKTQDLNYVRTKRQAEAKKIEKLKEELHLTDSGSA 120

Query: 128 SSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDH-------------------IKRKT 168
             +H+ F +D EE K               D   +                      +K 
Sbjct: 121 GPKHIVFVDDEEEQKSFDPAEYFDTTPELLDRRENRPRISQLEKTSLVDEKQKKKSAKKK 180

Query: 169 AASYRELEGRKKRVQELEKLYMDMSLHKELQ 199
              Y+EL+ RK+R ++L+K+   + L +EL 
Sbjct: 181 RKLYKELKERKEREKKLKKVEQRLELQRELM 211

This protein is found to be part of a large ribonucleoprotein complex containing the U3 snoRNA. Depletion of the Utp proteins impedes production of the 18S rRNA, indicating that they are part of the active pre-rRNA processing complex. This large RNP complex has been termed the small subunit (SSU) processome. Length = 239

>gnl|CDD|227548 COG5223, COG5223, Uncharacterized conserved protein [Function unknown]

 Score = 95.1 bits (236), Expect = 5e-24
 Identities = 51/142 (35%), Positives = 74/142 (52%), Gaps = 3/142 (2%)

Query: 2   SSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPD 61
                   R+ H+ER QP+ R+K+G LEK KDYV RA+  +KK++ +++L+EKA  RNPD
Sbjct: 3   LGFTKVPQRKVHRERTQPKDRRKYGKLEKKKDYVKRAQDINKKQDELKKLREKARERNPD 62

Query: 62  EFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLH 121
           E+Y  M   KT  GV  +  E      +   ++KTQD      + + ER K     T + 
Sbjct: 63  EYYHGMHSVKTDGGVSSIYREDEPTIMDLAKMLKTQDNEIQRCRRKLERYKPMPCGTQIK 122

Query: 122 SLDNNPSSRHVYFAEDREEAKE 143
             +   SS H  F + R   KE
Sbjct: 123 FEE---SSLHTIFVDMRFGQKE 141

Length = 240

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	218
PF03998	243	Utp11: Utp11 protein; InterPro: IPR007144 A large	100.0
KOG3237	250	consensus Uncharacterized conserved protein [Funct	100.0
COG5223	240	Uncharacterized conserved protein [Function unknow	100.0

>PF03998 Utp11: Utp11 protein; InterPro: IPR007144 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]

Probab=100.00  E-value=9.7e-69  Score=471.64  Aligned_cols=194  Identities=48%  Similarity=0.742  Sum_probs=178.4

Q ss_pred             cccccccCCcchhhccccccccccHHHHHHHHhHHHHHHHHHHHHHhhhCCCcchhhhhhccccC-CcccccCC-CCCCC
Q 027818           10 RRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVD-GVHRLEGE-ANKYT   87 (218)
Q Consensus        10 rr~HrER~Qp~~R~~lGlLEKkKDY~~RA~dy~~K~~~lk~Lr~KA~~rNpDEFyf~M~~sk~~~-G~h~~~~~-~~~~t   87 (218)
                      ||+|+|||||++|+|||||||||||++||+|||+|+++|+.|++||++||||||||||||+++.+ |+|+..++ ++.+|
T Consensus         1 rr~HrERsQP~~R~~lGlLEKkKDY~lRA~dy~~K~~~Lk~Lr~KA~~RNpDEFyf~M~~sk~~~~G~h~~~~~~~~~~~   80 (243)
T PF03998_consen    1 RRNHRERSQPASRKKLGLLEKKKDYKLRAKDYHKKEAKLKRLREKAANRNPDEFYFGMINSKTDDDGVHVEKREENEELS   80 (243)
T ss_pred             CCcccccCChHHhhhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHhcccCCCCeeccCccccccCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999 99999887 78999


Q ss_pred             HHHHHHhhhhcHHHHHHHHHHHHHHHHHHHhhhcccCCCCC--CCeEEEecChHHHHH-------------hhhhcCCCC
Q 027818           88 QEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPS--SRHVYFAEDREEAKE-------------IKSQSGRKD  152 (218)
Q Consensus        88 ~eqvkLlKTQDl~Yv~~kr~~e~kKIekL~~~L~~~~~~~~--nkH~vFvD~~eE~~~-------------~~r~~nr~~  152 (218)
                      +|+|+||+|||++||+++++++.+||++|+++||++++..+  |+|||||||++|+++             +++.+|+|+
T Consensus        81 ~e~~~llkTQD~~Yv~~~~~~e~kKIekL~~~l~~~~~~~~~~~kh~vFvD~~~e~~~f~~~~~~~t~~e~~~~~~nr~~  160 (243)
T PF03998_consen   81 KEQVKLLKTQDLNYVRTKRQIERKKIEKLQSELHLLDGKSSGKNKHIVFVDSEEEAKEFDPAEYFDTDPELLDRRENRPK  160 (243)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCceEEecCchHHHhccHHHhhccchhhhcccccccc
Confidence            99999999999999999999999999999999999985544  599999999999876             467888888


Q ss_pred             CCCCCC-CCc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCC
Q 027818          153 ALPDFD-DIP-------DHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQVSND  203 (218)
Q Consensus       153 ~~~l~~-~~~-------~~~~~~~~~~ykeL~~r~~R~k~L~~~~~~Lelqk~lm~~~~  203 (218)
                      .++|.. .++       ..+.+.+...|++|++|+.|+++|..|+++|++|++||+++.
T Consensus       161 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~eL~~r~~R~k~L~~~~~~lelqr~lm~kg~  219 (243)
T PF03998_consen  161 KDQLEEESLPEEEREAKKKLEKKREKLYKELEARLEREKELKKAEQELELQRALMKKGK  219 (243)
T ss_pred             HHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            888722 222       256788999999999999999999999999999999998763

This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This entry contains Utp11, a large ribonuclear protein that associates with snoRNA U3 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome

>KOG3237 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=2.4e-67  Score=457.82  Aligned_cols=202  Identities=45%  Similarity=0.693  Sum_probs=189.8

Q ss_pred             Ccccccccc--cccccccCCcchhhccccccccccHHHHHHHHhHHHHHHHHHHHHHhhhCCCcchhhhhhccccCCccc
Q 027818            1 MSSLRNALP--RRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHR   78 (218)
Q Consensus         1 MSSlrnavk--rr~HrER~Qp~~R~~lGlLEKkKDY~~RA~dy~~K~~~lk~Lr~KA~~rNpDEFyf~M~~sk~~~G~h~   78 (218)
                      ||||+||++  |++|||||||.+|++||+|||||||++||.|||+|+++|+.||++|+++|||||||+|+|+++.||+|+
T Consensus         1 mss~~~a~ks~rk~HRERsQP~~Rrk~G~LEKkKDY~~RA~dy~kKq~tLK~LrekA~eKNpDEfyh~M~~~K~~dG~hi   80 (250)
T KOG3237|consen    1 MSSFVNASKSRRKVHRERSQPEARRKYGFLEKKKDYKKRAQDYHKKQDTLKKLREKALEKNPDEFYHKMHNSKTKDGRHI   80 (250)
T ss_pred             CcchhhcchhhhhHHHhhcChhHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHhhccccCCccc
Confidence            999999999  999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHhhhcccC--CCCCCCeEEEecChHHHHH-------------
Q 027818           79 LEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLD--NNPSSRHVYFAEDREEAKE-------------  143 (218)
Q Consensus        79 ~~~~~~~~t~eqvkLlKTQDl~Yv~~kr~~e~kKIekL~~~L~~~~--~~~~nkH~vFvD~~eE~~~-------------  143 (218)
                      +..+.+++|+|||+||+|||++||.+++++|++|||+|.++||+++  .+.+|+||+||||.+|+++             
T Consensus        81 ~k~e~~e~t~eqlklmktQDi~YV~~kr~~ErkKIerlka~L~~~~~~~~~s~kH~~F~d~~~ea~~Fdp~~~f~tt~el  160 (250)
T KOG3237|consen   81 EKDEVDEPTMEQLKLMKTQDIGYVRMKRQRERKKIERLKAQLHCVDRNKGESNKHTKFVDDREEAKSFDPAKFFQTTLEL  160 (250)
T ss_pred             cccccccCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhcccccccccccccCceeEEeccHHHHhccChHHHhcccHHH
Confidence            9988889999999999999999999999999999999999999999  6788999999999999976             


Q ss_pred             hhhhcCCCCCCCCCC-------CCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccC
Q 027818          144 IKSQSGRKDALPDFD-------DIP-DHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQVSN  202 (218)
Q Consensus       144 ~~r~~nr~~~~~l~~-------~~~-~~~~~~~~~~ykeL~~r~~R~k~L~~~~~~Lelqk~lm~~~  202 (218)
                      +++.+||+..+++..       ..| ..+.+.+..+|++|..|.+|+++|..|++.|++++.|++++
T Consensus       161 v~R~~nr~~keei~~~~~~~~~~~~~k~~~k~~~k~~~eL~kR~eR~k~L~~v~qkv~l~k~L~~k~  227 (250)
T KOG3237|consen  161 VGRSENRLKKEEIQKEISKATSPMPKKSLDKKKQKRYNELKKRREREKKLNVVEQKVELQKELQKKK  227 (250)
T ss_pred             hhhhhhhhhHHHHHHHHHhccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            678999999887711       122 25688899999999999999999999999999999999983

>COG5223 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=7.5e-50  Score=342.28  Aligned_cols=202  Identities=32%  Similarity=0.364  Sum_probs=183.2

Q ss_pred             Ccc-cccccccccccccCCcchhhccccccccccHHHHHHHHhHHHHHHHHHHHHHhhhCCCcchhhhhhccccCCcccc
Q 027818            1 MSS-LRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRL   79 (218)
Q Consensus         1 MSS-lrnavkrr~HrER~Qp~~R~~lGlLEKkKDY~~RA~dy~~K~~~lk~Lr~KA~~rNpDEFyf~M~~sk~~~G~h~~   79 (218)
                      ||+ |.++-+|++|+||+||.+|++||+|||||||+.||.|||+|+++|+.||++|..||||||||+|++.++.+|+.++
T Consensus         1 Ms~~f~~v~qrK~hrERtQp~~RrkyG~LEK~KDyvkRaqd~~~kq~~lk~lrEka~ernpdEyyh~mhs~Ktd~gv~~~   80 (240)
T COG5223           1 MSLGFTKVPQRKVHRERTQPKDRRKYGKLEKKKDYVKRAQDINKKQDELKKLREKARERNPDEYYHGMHSVKTDGGVSSI   80 (240)
T ss_pred             CCcccccchHhhhHHHhcCcchhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHhhhhcccCCccce
Confidence            786 5555589999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCeEEEecChHHHHH-------------hhh
Q 027818           80 EGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAKE-------------IKS  146 (218)
Q Consensus        80 ~~~~~~~t~eqvkLlKTQDl~Yv~~kr~~e~kKIekL~~~L~~~~~~~~nkH~vFvD~~eE~~~-------------~~r  146 (218)
                      .+.++.+++|++++++|||.+|+++.+++|+.+++.+..+++|.   .++.||||||+..++++             +.+
T Consensus        81 ~ReDe~~~md~~KmlktqD~~~~R~~r~lEr~k~~~~~~qi~f~---es~~htifvD~r~~~kef~peeFf~tt~elV~r  157 (240)
T COG5223          81 YREDEPTIMDLAKMLKTQDNEIQRCRRKLERYKPMPCGTQIKFE---ESSLHTIFVDMRFGQKEFIPEEFFRTTEELVVR  157 (240)
T ss_pred             eccccchHHHHHHHHHhhhhHHHHHHHHHHHhCCcchhceeeee---ccccchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence            88888999999999999999999999999999999999999995   56899999999988876             578


Q ss_pred             hcCCCCCCCCC-----C-CCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCCC
Q 027818          147 QSGRKDALPDF-----D-DIPD-HIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQVSNDLL  205 (218)
Q Consensus       147 ~~nr~~~~~l~-----~-~~~~-~~~~~~~~~ykeL~~r~~R~k~L~~~~~~Lelqk~lm~~~~~~  205 (218)
                      +.||...++.+     + ..|. ...+.+.++..+|..|+.|.++|+.|++.+++++.|.++|++.
T Consensus       158 ~enrl~kdqi~nNel~~sv~~~~~~~k~k~k~~~el~~~~krd~kl~~~eer~e~~r~l~~kg~kk  223 (240)
T COG5223         158 RENRLEKDQIENNELEDSVFSGKLHSKLKEKAATELLLRQKRDKKLAAAEERVELDRLLQGKGGKK  223 (240)
T ss_pred             HHHHHHHhhhcccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Confidence            88888877752     1 1333 3477889999999999999999999999999999999998843

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	218
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 24/146 (16%), Positives = 54/146 (36%), Gaps = 25/146 (17%)

Query: 32  KDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKT-KTVDGVHRLEGEA-NKYTQE 89
           K  V R + Y K  +++  L+        +     ++ + KT      +  +    Y  +
Sbjct: 128 KYNVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTW-----VALDVCLSYKVQ 177

Query: 90  ELMLMKTQDIGYV-LQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAKEIKSQS 148
             M  K   I ++ L+   S    +E L  +L+ +D N +SR  + +  +     I+++ 
Sbjct: 178 CKMDFK---IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 149 GR-------KDALPDFDDI--PDHIK 165
            R       ++ L    ++       
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWN 260

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00