Citrus Sinensis ID: 027836

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGSCNDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNGYDLNKNGDSAPLLLDVLEGFLKFENSSQARITGRRQPDSESMSHFESRNARRPSSSSVAGGLPPLGRHLIGEQQGLPCLLTGKMSTIGDMTAMSFQMM
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHcHccccccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccEEEEcccccccccccc
Coil and Loop (DISEMBL)
MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRviekdeglppallgscndrakqlhaspsgRLLTALICEYLDWAQLNHTMKvylpecnlqKDAWKAELKEfsskngydlnkngdsaPLLLDVLEGFLKFENssqaritgrrqpdsesmshfesrnarrpssssvagglpplgrhligeqqglpclltgkmstigdMTAMSFQMM
Flexible Loop (DISEMBL)
mddytremmdlktlvtrtlekkgvlAKIRAELRASVfeaieeedrviekdeglpPALLGSCNDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSkngydlnkNGDSAPLLLDVLEGFLKFENssqaritgrrqpdsesmshfesrnarrpssssvAGGLPPLGRHLIGEQQGLPCLLTGKMSTIGDMTAMSFQMM
Low Complexity Region (SEG)
MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGSCNDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNGYDLNKNGDSAPLLLDVLEGFLKFENSSQARITGRRQPDSESMSHFESRNARRPSSSSVAGGLPPLGRHLIGEQQGLPCLLTGKMSTIGDMTAMSFQMM
Disordered region (IsUnstruct)
**********LKTLVTRTLEKKGVLAKIRAELRASVFEAIEE***V**************************SGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFS**NGYDLN***DSAPLLLDVLEGFLKF********************************************HLIGEQQGLPCLLTGK***************
Disordered Region (DISOPRED)
****TRE*MDLKTLVTRTLEKKGVLAKIRAELRASVFEA*******************************SPSGRLLTALICEYLDWAQLNHTMKVYLPEC******************************LLLDVL**************************************************************************AM*****
Disordered Region (DISEMBL)
********MDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGSCNDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNGYDLNKNGDSAPLLLDVLEGFLKFENSS*******************************AGGLPPLGRHLIGEQQGLPCLLTGKMSTIGDMTAMSFQMM
Disordered Region (DISPRO)
*DDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGSCNDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNGYDLNKNGDSAPLLLDVLEGFLKFEN************************************************QGLPCLLTGKMSTIGD*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGSCNDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNGYDLNKNGDSAPLLLDVLEGFLKFENSSQARITGRRQPDSESMSHFESRNARRPSSSSVAGGLPPLGRHLIGEQQGLPCLLTGKMSTIGDMTAMSFQMM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	218	2.2.26 [Sep-21-2011]
Q9FQ24	257	Protein TONNEAU 1b OS=Ara	yes	no	0.876	0.743	0.721	3e-76
Q9FQ25	260	Protein TONNEAU 1a OS=Ara	no	no	0.876	0.734	0.726	2e-72
O95684	399	FGFR1 oncogene partner OS	yes	no	0.403	0.220	0.375	2e-10
Q4R7V3	379	FGFR1 oncogene partner OS	N/A	no	0.403	0.232	0.375	2e-10
Q2YDD1	399	FGFR1 oncogene partner OS	yes	no	0.403	0.220	0.375	3e-10
Q4V7C1	399	FGFR1 oncogene partner OS	yes	no	0.389	0.213	0.376	5e-10
Q66JX5	399	FGFR1 oncogene partner OS	no	no	0.389	0.213	0.376	5e-10
Q4V7R8	169	LisH domain-containing pr	N/A	no	0.490	0.633	0.313	2e-06
Q9CZS3	174	LisH domain-containing pr	no	no	0.660	0.827	0.25	6e-05
Q5ZJ24	175	LisH domain-containing pr	no	no	0.490	0.611	0.280	8e-05

>sp|Q9FQ24|TON1B_ARATH Protein TONNEAU 1b OS=Arabidopsis thaliana GN=TON1B PE=1 SV=1

 Score =  284 bits (727), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 140/194 (72%), Positives = 160/194 (82%), Gaps = 3/194 (1%)

Query: 1   MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGS 60
           MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIE +EGLPPALLGS
Sbjct: 1   MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIENNEGLPPALLGS 60

Query: 61  CNDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNG 120
           CNDRA+QLHASPSGRLL+ALICEYLDWAQLNHT+KVY PECN  KD+WK+E+++FS  NG
Sbjct: 61  CNDRARQLHASPSGRLLSALICEYLDWAQLNHTLKVYQPECNSAKDSWKSEIRDFSINNG 120

Query: 121 YDLNKNGDSAPLLLDVLEGFLKFENSSQAR-ITGRRQPDSESMSHFESRNARRPSSSSVA 179
           Y+LN+N DS PLLLDVLEGFLKFEN +Q    + RR+ ++ES    ++RN   P  SS +
Sbjct: 121 YELNRNEDSRPLLLDVLEGFLKFENMTQVMGGSSRRESETESSLSLDTRNP--PRRSSAS 178

Query: 180 GGLPPLGRHLIGEQ 193
             LP   R +   Q
Sbjct: 179 DSLPHQRRSVSASQ 192

Involved in the control of the dynamic organization of the cortical cytoskeleton. May play a role in the organization of microtubule arrays at the centrosome through interaction with centrin 1 (CEN1).
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FQ25|TON1A_ARATH Protein TONNEAU 1a OS=Arabidopsis thaliana GN=TON1A PE=1 SV=1

 Score =  271 bits (694), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 141/194 (72%), Positives = 161/194 (82%), Gaps = 3/194 (1%)

Query: 1   MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGS 60
           MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIE +EG PPALLGS
Sbjct: 1   MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIENNEGPPPALLGS 60

Query: 61  CNDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNG 120
           CNDRA++LHASPSGRLL+ALICEYLDWAQLNHT+ VY PE NL KD+WK+EL++F+S NG
Sbjct: 61  CNDRARKLHASPSGRLLSALICEYLDWAQLNHTLIVYQPESNLPKDSWKSELRDFNSNNG 120

Query: 121 YDLNKNGDSAPLLLDVLEGFLKFENSSQAR-ITGRRQPDSESMSHFESRNARRPSSSSVA 179
           ++LN+NGDS PLLLDVLEGFLKFE+ +Q    + RR  ++ES S  ESRN   P  SS +
Sbjct: 121 FELNRNGDSGPLLLDVLEGFLKFESMTQGMGSSSRRDSETESSSSLESRNP--PRRSSAS 178

Query: 180 GGLPPLGRHLIGEQ 193
             LPP  R +   Q
Sbjct: 179 DSLPPQRRPVSASQ 192

Involved in the control of the dynamic organization of the cortical cytoskeleton. May play a role in the organization of microtubule arrays at the centrosome through interaction with centrin 1 (CEN1).

Arabidopsis thaliana (taxid: 3702)

>sp|O95684|FR1OP_HUMAN FGFR1 oncogene partner OS=Homo sapiens GN=FGFR1OP PE=1 SV=1

 Score = 65.9 bits (159), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 60/96 (62%), Gaps = 8/96 (8%)

Query: 7   EMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGSCNDRAK 66
           E  +L+ L+ +TLE  GVL +I+AELRA+VF A+EE+++V    E   P +    N+  K
Sbjct: 12  EDTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKV----ENKTPLV----NESLK 63

Query: 67  QLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECN 102
           +   +  GRL+ +L+ E+L +  L+ T+ V+ PE +
Sbjct: 64  KFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETS 99

Required for anchoring microtubules to the centrosomes.

Homo sapiens (taxid: 9606)

>sp|Q4R7V3|FR1OP_MACFA FGFR1 oncogene partner OS=Macaca fascicularis GN=FGFR1OP PE=2 SV=1

 Score = 65.9 bits (159), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 60/96 (62%), Gaps = 8/96 (8%)

Query: 7   EMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGSCNDRAK 66
           E  +L+ L+ +TLE  GVL +I+AELRA+VF A+EE+++V    E   P +    N+  K
Sbjct: 12  EDTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKV----ENKTPLV----NESLK 63

Query: 67  QLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECN 102
           +   +  GRL+ +L+ E+L +  L+ T+ V+ PE +
Sbjct: 64  KFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETS 99

Required for anchoring microtubules to the centrosomes.

Macaca fascicularis (taxid: 9541)

>sp|Q2YDD1|FR1OP_BOVIN FGFR1 oncogene partner OS=Bos taurus GN=FGFR1OP PE=2 SV=1

 Score = 65.1 bits (157), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 60/96 (62%), Gaps = 8/96 (8%)

Query: 7   EMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGSCNDRAK 66
           E  +L+ L+ +TLE  GVL +I+AELRA+VF A+EE+++V    E   P +    N+  K
Sbjct: 12  EDTELRYLLVQTLENSGVLNRIKAELRAAVFLALEEQEKV----ENKTPLV----NESLK 63

Query: 67  QLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECN 102
           +   +  GRL+ +L+ E+L +  L+ T+ V+ PE +
Sbjct: 64  KFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETS 99

Required for anchoring microtubules to the centrosomes.

Bos taurus (taxid: 9913)

>sp|Q4V7C1|FR1OP_RAT FGFR1 oncogene partner OS=Rattus norvegicus GN=Fgfr1op PE=2 SV=1

 Score = 64.7 bits (156), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 59/93 (63%), Gaps = 8/93 (8%)

Query: 10  DLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGSCNDRAKQLH 69
           +L+ L+ +TLE  GVL +I+AELRA+VF A+EE+++V    E   P +    N+  K+  
Sbjct: 15  ELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKV----ENKTPLV----NESLKKFL 66

Query: 70  ASPSGRLLTALICEYLDWAQLNHTMKVYLPECN 102
            +  GRL+ +L+ E+L +  L+ T+ V+ PE +
Sbjct: 67  NTKDGRLVASLVAEFLQFFNLDFTLAVFHPETS 99

Required for anchoring microtubules to the centrosomes.

Rattus norvegicus (taxid: 10116)

>sp|Q66JX5|FR1OP_MOUSE FGFR1 oncogene partner OS=Mus musculus GN=Fgfr1op PE=1 SV=1

 Score = 64.7 bits (156), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 59/93 (63%), Gaps = 8/93 (8%)

Query: 10  DLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGSCNDRAKQLH 69
           +L+ L+ +TLE  GVL +I+AELRA+VF A+EE+++V    E   P +    N+  K+  
Sbjct: 15  ELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKV----ENKTPLV----NENLKKFL 66

Query: 70  ASPSGRLLTALICEYLDWAQLNHTMKVYLPECN 102
            +  GRL+ +L+ E+L +  L+ T+ V+ PE +
Sbjct: 67  NTKDGRLVASLVAEFLQFFNLDFTLAVFHPETS 99

Required for anchoring microtubules to the centrosomes.

Mus musculus (taxid: 10090)

>sp|Q4V7R8|FOPNL_XENLA LisH domain-containing protein FOPNL OS=Xenopus laevis GN=Fopnl PE=2 SV=1

 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 65/137 (47%), Gaps = 30/137 (21%)

Query: 10  DLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGSCNDRAKQLH 69
           DLK +V  TLEK+GV+ +++A +RA VFEA++        D   P  +L           
Sbjct: 6   DLKAVVKDTLEKRGVMGQLKARVRAEVFEALD--------DRSEPKPVL----------- 46

Query: 70  ASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNGYDLNK---- 125
            SP   L+  LI EYL + + ++T  V   E  L +       + F +K   +LN     
Sbjct: 47  -SPENLLINELIREYLAFNKYSYTSSVLTAETGLSEVPLD---RSFLTK---ELNVVEDL 99

Query: 126 NGDSAPLLLDVLEGFLK 142
           N  S P+L  ++  FLK
Sbjct: 100 NSQSVPILYGIVAHFLK 116

Involved in the biogenesis of cilia.

Xenopus laevis (taxid: 8355)

>sp|Q9CZS3|FOPNL_MOUSE LisH domain-containing protein FOPNL OS=Mus musculus GN=Fopnl PE=2 SV=1

 Score = 47.8 bits (112), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 74/176 (42%), Gaps = 32/176 (18%)

Query: 8   MMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGSCNDRAKQ 67
           + +LK ++  TLEK+GVL  ++A +RA VF A++                    +DR  +
Sbjct: 4   VTELKAVLKDTLEKRGVLGHLKARIRAEVFNALD--------------------DDREPR 43

Query: 68  LHASPSGRLLTALICEYLDWAQLNHTMKVYL-----PECNLQKDAWKAELKEFSSKNGYD 122
              S    L+  LI EYL++ +  +T  V +     P   L +     EL      N ++
Sbjct: 44  PSLSHENLLINELIREYLEFNKYKYTASVLIAESGQPVVPLDRQFLIREL------NAFE 97

Query: 123 LNKNGDSAPLLLDVLEGFLKFENSSQARITGRRQPDSESMSHFESRNARRPSSSSV 178
            +K+ +S PLL  +L  FL+        +         +  H   + +RRP    V
Sbjct: 98  ESKD-NSIPLLYGILAHFLRGPPDGAQNVLLTESTLHPATKHLSWKPSRRPDDDHV 152

Involved in the biogenesis of cilia.

Mus musculus (taxid: 10090)

>sp|Q5ZJ24|FOPNL_CHICK LisH domain-containing protein FOPNL OS=Gallus gallus GN=FOPNL PE=2 SV=1

 Score = 47.4 bits (111), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 32/139 (23%)

Query: 8   MMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGSCNDRAKQ 67
           + +LK ++  TLEK+G L +I+A +RA VF A++++       E  PP     C++    
Sbjct: 4   IAELKAVLKDTLEKRGALRQIKARIRAEVFNALDDQ------SEPRPPL----CHE---- 49

Query: 68  LHASPSGRLLTALICEYLDWAQLNHTMKVYL-----PECNLQKDAWKAELKEFSSKNGYD 122
                   L+  LI EYL++ +  ++  V       PE  L +     EL          
Sbjct: 50  ------NLLINELIREYLEFNKYKYSASVLTAEAGQPEVPLDRQFLVKELNIVE------ 97

Query: 123 LNKNGDSAPLLLDVLEGFL 141
            + NG S PLL  ++  FL
Sbjct: 98  -DANGKSVPLLYGIISHFL 115

Involved in the biogenesis of cilia.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
224098113	263	predicted protein [Populus trichocarpa]	0.857	0.711	0.909	1e-94
118482415	263	unknown [Populus trichocarpa]	0.857	0.711	0.903	2e-94
224112929	265	predicted protein [Populus trichocarpa]	0.857	0.705	0.904	2e-94
255565888	263	FGFR1 oncogene partner, putative [Ricinu	0.857	0.711	0.898	1e-93
118484693	265	unknown [Populus trichocarpa]	0.857	0.705	0.899	2e-93
225448741	265	PREDICTED: uncharacterized protein LOC10	0.857	0.705	0.878	1e-89
357445055	265	FGFR1 oncogene partner [Medicago truncat	0.880	0.724	0.841	3e-89
217073108	265	unknown [Medicago truncatula]	0.880	0.724	0.841	5e-89
388519825	265	unknown [Medicago truncatula]	0.880	0.724	0.835	1e-88
388496850	265	unknown [Lotus japonicus] gi|388514119|g	0.880	0.724	0.841	3e-88

>gi|224098113|ref|XP_002311121.1| predicted protein [Populus trichocarpa] gi|222850941|gb|EEE88488.1| predicted protein [Populus trichocarpa]

 Score =  351 bits (901), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 170/187 (90%), Positives = 178/187 (95%)

Query: 1   MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGS 60
           MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVI+KDEGLPPALLGS
Sbjct: 1   MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIDKDEGLPPALLGS 60

Query: 61  CNDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNG 120
           CNDRAKQLHASPSGRLLTALICEYLDW QLNHT+KVYLPECNLQKD+WKAELKEFSSKNG
Sbjct: 61  CNDRAKQLHASPSGRLLTALICEYLDWGQLNHTLKVYLPECNLQKDSWKAELKEFSSKNG 120

Query: 121 YDLNKNGDSAPLLLDVLEGFLKFENSSQARITGRRQPDSESMSHFESRNARRPSSSSVAG 180
           YDLN+NGDSAPLLLDVLEGFLKFEN SQ R TGRR  ++ES+S+ ESRN RRPSSSSVAG
Sbjct: 121 YDLNRNGDSAPLLLDVLEGFLKFENLSQGRGTGRRMSETESLSNVESRNMRRPSSSSVAG 180

Query: 181 GLPPLGR 187
           GLPPL R
Sbjct: 181 GLPPLIR 187

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482415|gb|ABK93130.1| unknown [Populus trichocarpa]

 Score =  350 bits (899), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 169/187 (90%), Positives = 178/187 (95%)

Query: 1   MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGS 60
           MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVI+KDEGLPPALLGS
Sbjct: 1   MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIDKDEGLPPALLGS 60

Query: 61  CNDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNG 120
           CNDRAKQLHASPSGRLLTALICEYLDW QLNHT+KVYLPECNLQKD+WKAE+KEFSSKNG
Sbjct: 61  CNDRAKQLHASPSGRLLTALICEYLDWGQLNHTLKVYLPECNLQKDSWKAEMKEFSSKNG 120

Query: 121 YDLNKNGDSAPLLLDVLEGFLKFENSSQARITGRRQPDSESMSHFESRNARRPSSSSVAG 180
           YDLN+NGDSAPLLLDVLEGFLKFEN SQ R TGRR  ++ES+S+ ESRN RRPSSSSVAG
Sbjct: 121 YDLNRNGDSAPLLLDVLEGFLKFENLSQGRGTGRRMSETESLSNVESRNMRRPSSSSVAG 180

Query: 181 GLPPLGR 187
           GLPPL R
Sbjct: 181 GLPPLIR 187

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112929|ref|XP_002316335.1| predicted protein [Populus trichocarpa] gi|222865375|gb|EEF02506.1| predicted protein [Populus trichocarpa]

 Score =  350 bits (898), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 171/189 (90%), Positives = 178/189 (94%), Gaps = 2/189 (1%)

Query: 1   MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGS 60
           MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGS
Sbjct: 1   MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGS 60

Query: 61  CNDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNG 120
           CNDRAKQLHASPSGRLLTALICEYLDWAQLNHT+KVYLPECNLQKD+WKAEL EFSSKNG
Sbjct: 61  CNDRAKQLHASPSGRLLTALICEYLDWAQLNHTLKVYLPECNLQKDSWKAELNEFSSKNG 120

Query: 121 YDLNKNGDSAPLLLDVLEGFLKFENSSQARITGRRQPDSESMSHFESRNA--RRPSSSSV 178
           YDLN+NGDS PLLLDVLEGFLKFEN SQ R  GRR P++ES+S+ ESRN   RRPSSSSV
Sbjct: 121 YDLNRNGDSGPLLLDVLEGFLKFENLSQGRGAGRRVPEAESLSNVESRNIRMRRPSSSSV 180

Query: 179 AGGLPPLGR 187
           AGGLPPLGR
Sbjct: 181 AGGLPPLGR 189

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565888|ref|XP_002523933.1| FGFR1 oncogene partner, putative [Ricinus communis] gi|223536863|gb|EEF38502.1| FGFR1 oncogene partner, putative [Ricinus communis]

 Score =  348 bits (892), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 168/187 (89%), Positives = 176/187 (94%)

Query: 1   MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGS 60
           MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGS
Sbjct: 1   MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGS 60

Query: 61  CNDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNG 120
           CN+RAKQLHASPSGRLLTALICEYLDWAQLNHT+KVYLPECNLQKD+WK ELKEFSSKNG
Sbjct: 61  CNERAKQLHASPSGRLLTALICEYLDWAQLNHTLKVYLPECNLQKDSWKTELKEFSSKNG 120

Query: 121 YDLNKNGDSAPLLLDVLEGFLKFENSSQARITGRRQPDSESMSHFESRNARRPSSSSVAG 180
           YD N+NGDS PLLLDVLEGFLKFEN SQ R TGRR   +ES+S+ +SRN RRPSSSSVAG
Sbjct: 121 YDPNRNGDSGPLLLDVLEGFLKFENLSQGRGTGRRVSKAESLSNLDSRNVRRPSSSSVAG 180

Query: 181 GLPPLGR 187
           GLPPLGR
Sbjct: 181 GLPPLGR 187

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484693|gb|ABK94217.1| unknown [Populus trichocarpa]

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 170/189 (89%), Positives = 177/189 (93%), Gaps = 2/189 (1%)

Query: 1   MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGS 60
           MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGS
Sbjct: 1   MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGS 60

Query: 61  CNDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNG 120
           CNDRAKQLHASPSGRLLTALICEYLDWAQLNHT+KVYLPECNLQKD+WKAEL EFSSKNG
Sbjct: 61  CNDRAKQLHASPSGRLLTALICEYLDWAQLNHTLKVYLPECNLQKDSWKAELNEFSSKNG 120

Query: 121 YDLNKNGDSAPLLLDVLEGFLKFENSSQARITGRRQPDSESMSHFESRNA--RRPSSSSV 178
           YDLN+NGDS PLLLDVLEGFLKFEN SQ R  GRR P++ES+S+ ES N   RRPSSSSV
Sbjct: 121 YDLNRNGDSGPLLLDVLEGFLKFENLSQGRGAGRRVPEAESLSNVESGNIRMRRPSSSSV 180

Query: 179 AGGLPPLGR 187
           AGGLPPLGR
Sbjct: 181 AGGLPPLGR 189

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448741|ref|XP_002281259.1| PREDICTED: uncharacterized protein LOC100265617 [Vitis vinifera] gi|297736461|emb|CBI25332.3| unnamed protein product [Vitis vinifera]

 Score =  335 bits (858), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 166/189 (87%), Positives = 172/189 (91%), Gaps = 2/189 (1%)

Query: 1   MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGS 60
           MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDR +EK+E LPPALLGS
Sbjct: 1   MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRAVEKEESLPPALLGS 60

Query: 61  CNDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNG 120
           CNDRAKQLHASPSGRLL ALICEYLDWAQLNHT KVY+PECNLQKD WKAELKEFSSKNG
Sbjct: 61  CNDRAKQLHASPSGRLLAALICEYLDWAQLNHTSKVYIPECNLQKDFWKAELKEFSSKNG 120

Query: 121 YDLNKNGDSAPLLLDVLEGFLKFENSSQARITGRRQPDSE--SMSHFESRNARRPSSSSV 178
           YDLN+NG+S PLLLDVLEGFLKFEN SQAR  GRR P SE  S+S  E RN RRPSSSSV
Sbjct: 121 YDLNRNGESCPLLLDVLEGFLKFENLSQARGPGRRLPTSEPDSLSGLEPRNMRRPSSSSV 180

Query: 179 AGGLPPLGR 187
           AGGLPPLGR
Sbjct: 181 AGGLPPLGR 189

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445055|ref|XP_003592805.1| FGFR1 oncogene partner [Medicago truncatula] gi|355481853|gb|AES63056.1| FGFR1 oncogene partner [Medicago truncatula]

 Score =  333 bits (854), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 164/195 (84%), Positives = 178/195 (91%), Gaps = 3/195 (1%)

Query: 1   MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGS 60
           MDDYTREMMDLKTLVTRTLEKKGVLA+IRAELRASVFEAIEEEDRVIEKD+ LPPALLGS
Sbjct: 1   MDDYTREMMDLKTLVTRTLEKKGVLARIRAELRASVFEAIEEEDRVIEKDQALPPALLGS 60

Query: 61  CNDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNG 120
           CNDRAKQLHASPSGRLLTALICEYLDWAQLNH++KVYLPECNL+KD+WK+ELKEFSSKNG
Sbjct: 61  CNDRAKQLHASPSGRLLTALICEYLDWAQLNHSLKVYLPECNLEKDSWKSELKEFSSKNG 120

Query: 121 YDLNKNGDSAPLLLDVLEGFLKFENSSQARITGRR--QPDSESMSHFESRNARRPSSSSV 178
           YDLN+NGD AP+LLDVLEGFLKFEN SQAR +GRR    D+E + + ESRN RR SSSSV
Sbjct: 121 YDLNRNGD-APVLLDVLEGFLKFENLSQARASGRRLTTSDTEPLPNSESRNTRRHSSSSV 179

Query: 179 AGGLPPLGRHLIGEQ 193
           AGGLPPLGR +   Q
Sbjct: 180 AGGLPPLGRAVPSSQ 194

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073108|gb|ACJ84913.1| unknown [Medicago truncatula]

 Score =  332 bits (852), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 164/195 (84%), Positives = 177/195 (90%), Gaps = 3/195 (1%)

Query: 1   MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGS 60
           MDDYTREMMDLKTLVTRTLEKKGVLA+IRAELRASVFEAIEEEDRVIEKD+ LPPALLGS
Sbjct: 1   MDDYTREMMDLKTLVTRTLEKKGVLARIRAELRASVFEAIEEEDRVIEKDQALPPALLGS 60

Query: 61  CNDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNG 120
           CNDRAKQLHASPSGRLLTALICEYLDWAQLNH++KVYLPECNL+KD+WK ELKEFSSKNG
Sbjct: 61  CNDRAKQLHASPSGRLLTALICEYLDWAQLNHSLKVYLPECNLEKDSWKPELKEFSSKNG 120

Query: 121 YDLNKNGDSAPLLLDVLEGFLKFENSSQARITGRR--QPDSESMSHFESRNARRPSSSSV 178
           YDLN+NGD AP+LLDVLEGFLKFEN SQAR +GRR    D+E + + ESRN RR SSSSV
Sbjct: 121 YDLNRNGD-APVLLDVLEGFLKFENLSQARASGRRLTTSDTEPLPNSESRNTRRHSSSSV 179

Query: 179 AGGLPPLGRHLIGEQ 193
           AGGLPPLGR +   Q
Sbjct: 180 AGGLPPLGRAVPSSQ 194

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519825|gb|AFK47974.1| unknown [Medicago truncatula]

 Score =  331 bits (849), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 163/195 (83%), Positives = 177/195 (90%), Gaps = 3/195 (1%)

Query: 1   MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGS 60
           MDDYTREMMDLKTLVTRTLEKKGVLA+IRAELRASVFEAIEEEDRVIEKD+ LPPALLGS
Sbjct: 1   MDDYTREMMDLKTLVTRTLEKKGVLARIRAELRASVFEAIEEEDRVIEKDQALPPALLGS 60

Query: 61  CNDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNG 120
           CNDRAKQLHASPSGRLLTALICEYLDWAQLNH +KVYLPECNL+KD+WK+ELKEFSSKNG
Sbjct: 61  CNDRAKQLHASPSGRLLTALICEYLDWAQLNHLLKVYLPECNLEKDSWKSELKEFSSKNG 120

Query: 121 YDLNKNGDSAPLLLDVLEGFLKFENSSQARITGRR--QPDSESMSHFESRNARRPSSSSV 178
           YDLN+NGD AP+LLDVLEGFL+FEN SQAR +GRR    D+E + + ESRN RR SSSSV
Sbjct: 121 YDLNRNGD-APVLLDVLEGFLRFENLSQARASGRRLTTSDTEPLPNSESRNTRRHSSSSV 179

Query: 179 AGGLPPLGRHLIGEQ 193
           AGGLPPLGR +   Q
Sbjct: 180 AGGLPPLGRAVPSSQ 194

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496850|gb|AFK36491.1| unknown [Lotus japonicus] gi|388514119|gb|AFK45121.1| unknown [Lotus japonicus]

 Score =  330 bits (845), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 164/195 (84%), Positives = 177/195 (90%), Gaps = 3/195 (1%)

Query: 1   MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGS 60
           MDDYTREMMDLKTLVTRTLEKKGVLA+IRAELRASVFEAIEEEDRV+EK++GLPPALLGS
Sbjct: 1   MDDYTREMMDLKTLVTRTLEKKGVLARIRAELRASVFEAIEEEDRVVEKEQGLPPALLGS 60

Query: 61  CNDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNG 120
           CNDRAKQLHASPSGRLLTALICEYLDWAQLNHT+KVYLPECNL+KD WKAELKEFSSKNG
Sbjct: 61  CNDRAKQLHASPSGRLLTALICEYLDWAQLNHTLKVYLPECNLEKDFWKAELKEFSSKNG 120

Query: 121 YDLNKNGDSAPLLLDVLEGFLKFENSSQARITGRRQPDSES--MSHFESRNARRPSSSSV 178
           YDLN+NGDS P+LLDVLEGFLKFEN SQAR +GRR   SE+  + + ESR  RR SSSSV
Sbjct: 121 YDLNRNGDS-PVLLDVLEGFLKFENLSQARASGRRFTTSEAEPLPNSESRTVRRHSSSSV 179

Query: 179 AGGLPPLGRHLIGEQ 193
           AGGLPPLGR +   Q
Sbjct: 180 AGGLPPLGRAVPSSQ 194

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
TAIR|locus:2082662	260	TON1A "AT3G55000" [Arabidopsis	0.876	0.734	0.731	7e-70
TAIR|locus:505006399	257	TON1B "AT3G55005" [Arabidopsis	0.876	0.743	0.726	1.1e-69
ZFIN|ZDB-GENE-090417-1	511	fgfr1op "FGFR1 oncogene partne	0.559	0.238	0.352	1.6e-11
UNIPROTKB|F1SBY0	522	FGFR1OP "Uncharacterized prote	0.720	0.300	0.304	1.7e-11
UNIPROTKB|F1P288	376	FGFR1OP "Uncharacterized prote	0.555	0.321	0.343	3.9e-11
UNIPROTKB|O95684	399	FGFR1OP "FGFR1 oncogene partne	0.550	0.300	0.333	7.3e-10
UNIPROTKB|Q2YDD1	399	FGFR1OP "FGFR1 oncogene partne	0.550	0.300	0.333	1.8e-09
MGI|MGI:1922546	399	Fgfr1op "Fgfr1 oncogene partne	0.550	0.300	0.333	1.8e-09
RGD|1583370	399	Fgfr1op "Fgfr1 oncogene partne	0.550	0.300	0.333	1.8e-09
UNIPROTKB|Q4V7C1	399	Fgfr1op "FGFR1 oncogene partne	0.550	0.300	0.333	1.8e-09

TAIR|locus:2082662 TON1A "AT3G55000" [Arabidopsis thaliana (taxid:3702)]

 Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
 Identities = 142/194 (73%), Positives = 162/194 (83%)

Query:     1 MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGS 60
             MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIE +EG PPALLGS
Sbjct:     1 MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIENNEGPPPALLGS 60

Query:    61 CNDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNG 120
             CNDRA++LHASPSGRLL+ALICEYLDWAQLNHT+ VY PE NL KD+WK+EL++F+S NG
Sbjct:    61 CNDRARKLHASPSGRLLSALICEYLDWAQLNHTLIVYQPESNLPKDSWKSELRDFNSNNG 120

Query:   121 YDLNKNGDSAPLLLDVLEGFLKFENSSQAR-ITGRRQPDSESMSHFESRNARRPSSSSVA 179
             ++LN+NGDS PLLLDVLEGFLKFE+ +Q    + RR  ++ES S  ESRN  R SS+S  
Sbjct:   121 FELNRNGDSGPLLLDVLEGFLKFESMTQGMGSSSRRDSETESSSSLESRNPPRRSSAS-- 178

Query:   180 GGLPPLGRHLIGEQ 193
               LPP  R +   Q
Sbjct:   179 DSLPPQRRPVSASQ 192

GO:0000226 "microtubule cytoskeleton organization" evidence=IMP;NAS

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0000913 "preprophase band assembly" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005938 "cell cortex" evidence=IDA

GO:0009574 "preprophase band" evidence=IDA

GO:0030863 "cortical cytoskeleton" evidence=IDA

GO:0030865 "cortical cytoskeleton organization" evidence=IMP

GO:0030981 "cortical microtubule cytoskeleton" evidence=IDA

GO:0006312 "mitotic recombination" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

TAIR|locus:505006399 TON1B "AT3G55005" [Arabidopsis thaliana (taxid:3702)]

 Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
 Identities = 141/194 (72%), Positives = 161/194 (82%)

Query:     1 MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGS 60
             MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIE +EGLPPALLGS
Sbjct:     1 MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIENNEGLPPALLGS 60

Query:    61 CNDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNG 120
             CNDRA+QLHASPSGRLL+ALICEYLDWAQLNHT+KVY PECN  KD+WK+E+++FS  NG
Sbjct:    61 CNDRARQLHASPSGRLLSALICEYLDWAQLNHTLKVYQPECNSAKDSWKSEIRDFSINNG 120

Query:   121 YDLNKNGDSAPLLLDVLEGFLKFENSSQARI-TGRRQPDSESMSHFESRNARRPSSSSVA 179
             Y+LN+N DS PLLLDVLEGFLKFEN +Q    + RR+ ++ES    ++RN  R SS+S  
Sbjct:   121 YELNRNEDSRPLLLDVLEGFLKFENMTQVMGGSSRRESETESSLSLDTRNPPRRSSAS-- 178

Query:   180 GGLPPLGRHLIGEQ 193
               LP   R +   Q
Sbjct:   179 DSLPHQRRSVSASQ 192

GO:0000226 "microtubule cytoskeleton organization" evidence=IMP;NAS

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0000913 "preprophase band assembly" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0030865 "cortical cytoskeleton organization" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0030981 "cortical microtubule cytoskeleton" evidence=IDA

ZFIN|ZDB-GENE-090417-1 fgfr1op "FGFR1 oncogene partner" [Danio rerio (taxid:7955)]

 Score = 166 (63.5 bits), Expect = 1.6e-11, P = 1.6e-11
 Identities = 48/136 (35%), Positives = 77/136 (56%)

Query:     5 TREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGSCNDR 64
             T E  +L+ L+ + LE  GVL KI+AELRA+VF A+EE+D+V    E   P +    N+ 
Sbjct:     4 TEEDTELRDLLIQNLENSGVLNKIKAELRAAVFLALEEQDKV----ENKTPLV----NEN 55

Query:    65 AKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQK--DAWKAELKEFSSKNGYD 122
              K+   +  GRL+  LI ++L    L+ T+ V+ PE +     D+ +   KE       +
Sbjct:    56 LKKSLNTKDGRLVAGLITDFLQVFNLDFTLAVFQPEISTLNGLDSREVLSKELGISES-E 114

Query:   123 LNKNGDSAPLLLDVLE 138
             +NKN   +PLLL++++
Sbjct:   115 VNKN---SPLLLELVK 127

GO:0034453 "microtubule anchoring" evidence=IEA

GO:0005815 "microtubule organizing center" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F1SBY0 FGFR1OP "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 166 (63.5 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 53/174 (30%), Positives = 96/174 (55%)

Query:     7 EMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGSCNDRAK 66
             E  +L+ L+ +TLE  GVL +I+AELRA+VF A+EE+++V    E   P +    N+  K
Sbjct:    12 EDTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKV----ENKTPLV----NESLK 63

Query:    67 QLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNGYDLNKN 126
             +   +  GRL+ +L+ E+L +  L+ T+ V+ PE +  +     E +E  +++   +   
Sbjct:    64 KFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTFQGL---EGRENIARDLGIIEAE 120

Query:   127 GD-SAPLLLDVLEGFLKFEN--SS--QARITGRR-QPDSESMSHFESRNARRPS 174
             G    PLLL+V+    + E   SS  + + +G R QP S+ +  ++ +  ++ S
Sbjct:   121 GTVGGPLLLEVIRRCQQKEKGPSSGEETKRSGERVQPASKLIPRYKGQGKKKTS 174

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0030335 "positive regulation of cell migration" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0030292 "protein tyrosine kinase inhibitor activity" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0034453 "microtubule anchoring" evidence=IEA

UNIPROTKB|F1P288 FGFR1OP "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 160 (61.4 bits), Expect = 3.9e-11, P = 3.9e-11
 Identities = 46/134 (34%), Positives = 74/134 (55%)

Query:     5 TREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGSCNDR 64
             T E  +L+ L+ +TLE  GVL KI+AELRA+VF A+EE+++V    E   P +    N+ 
Sbjct:     9 TEEDTELRDLLVQTLESSGVLNKIKAELRAAVFLALEEQEKV----ENKAPLV----NES 60

Query:    65 AKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNGYDLN 124
              K   ++  GRL+  L+ E+L +  L+ T+ V+ PE +        E    +   G  + 
Sbjct:    61 LKNFLSTKDGRLVAGLVAEFLRFFNLDFTLAVFQPESSTLNGLDDRE--NLAQDLG--IT 116

Query:   125 KNGDSA-PLLLDVL 137
             + G +  PLLL+V+
Sbjct:   117 EEGTAGGPLLLEVV 130

GO:0034453 "microtubule anchoring" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030292 "protein tyrosine kinase inhibitor activity" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0030335 "positive regulation of cell migration" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

UNIPROTKB|O95684 FGFR1OP "FGFR1 oncogene partner" [Homo sapiens (taxid:9606)]

 Score = 156 (60.0 bits), Expect = 7.3e-10, P = 7.3e-10
 Identities = 44/132 (33%), Positives = 76/132 (57%)

Query:     7 EMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGSCNDRAK 66
             E  +L+ L+ +TLE  GVL +I+AELRA+VF A+EE+++V    E   P +    N+  K
Sbjct:    12 EDTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKV----ENKTPLV----NESLK 63

Query:    67 QLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNGYDLNKN 126
             +   +  GRL+ +L+ E+L +  L+ T+ V+ PE +  +     E +E  +++   +   
Sbjct:    64 KFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTLQGL---EGRENLARDLGIIEAE 120

Query:   127 GD-SAPLLLDVL 137
             G    PLLL+V+
Sbjct:   121 GTVGGPLLLEVI 132

GO:0034453 "microtubule anchoring" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

GO:0008284 "positive regulation of cell proliferation" evidence=IDA

GO:0030307 "positive regulation of cell growth" evidence=IDA

GO:0030335 "positive regulation of cell migration" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0019901 "protein kinase binding" evidence=IPI

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0030292 "protein tyrosine kinase inhibitor activity" evidence=IDA

GO:0006469 "negative regulation of protein kinase activity" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0004713 "protein tyrosine kinase activity" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0061099 "negative regulation of protein tyrosine kinase activity" evidence=IDA

UNIPROTKB|Q2YDD1 FGFR1OP "FGFR1 oncogene partner" [Bos taurus (taxid:9913)]

 Score = 154 (59.3 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 44/132 (33%), Positives = 76/132 (57%)

Query:     7 EMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGSCNDRAK 66
             E  +L+ L+ +TLE  GVL +I+AELRA+VF A+EE+++V    E   P +    N+  K
Sbjct:    12 EDTELRYLLVQTLENSGVLNRIKAELRAAVFLALEEQEKV----ENKTPLV----NESLK 63

Query:    67 QLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNGYDLNKN 126
             +   +  GRL+ +L+ E+L +  L+ T+ V+ PE +  +     E +E  +++   +   
Sbjct:    64 KFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTFQGL---EGRENLARDLGIIEAE 120

Query:   127 GD-SAPLLLDVL 137
             G    PLLL+V+
Sbjct:   121 GTVGGPLLLEVI 132

GO:0005815 "microtubule organizing center" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0034453 "microtubule anchoring" evidence=IEA

MGI|MGI:1922546 Fgfr1op "Fgfr1 oncogene partner" [Mus musculus (taxid:10090)]

 Score = 154 (59.3 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 44/132 (33%), Positives = 76/132 (57%)

Query:     7 EMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGSCNDRAK 66
             E  +L+ L+ +TLE  GVL +I+AELRA+VF A+EE+++V    E   P +    N+  K
Sbjct:    12 EDTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKV----ENKTPLV----NENLK 63

Query:    67 QLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNGYDLNKN 126
             +   +  GRL+ +L+ E+L +  L+ T+ V+ PE +  +     E +E  +++   +   
Sbjct:    64 KFLNTKDGRLVASLVAEFLQFFNLDFTLAVFHPETSTIQGL---EGRENLAQDLGIIEAE 120

Query:   127 GD-SAPLLLDVL 137
             G    PLLL+V+
Sbjct:   121 GTVGGPLLLEVI 132

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=ISO

GO:0005815 "microtubule organizing center" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006469 "negative regulation of protein kinase activity" evidence=ISO

GO:0008284 "positive regulation of cell proliferation" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO

GO:0030292 "protein tyrosine kinase inhibitor activity" evidence=ISO

GO:0030307 "positive regulation of cell growth" evidence=ISO

GO:0030335 "positive regulation of cell migration" evidence=ISO

GO:0034453 "microtubule anchoring" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0061099 "negative regulation of protein tyrosine kinase activity" evidence=ISO

RGD|1583370 Fgfr1op "Fgfr1 oncogene partner" [Rattus norvegicus (taxid:10116)]

 Score = 154 (59.3 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 44/132 (33%), Positives = 76/132 (57%)

Query:     7 EMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGSCNDRAK 66
             E  +L+ L+ +TLE  GVL +I+AELRA+VF A+EE+++V    E   P +    N+  K
Sbjct:    12 EDTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKV----ENKTPLV----NESLK 63

Query:    67 QLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNGYDLNKN 126
             +   +  GRL+ +L+ E+L +  L+ T+ V+ PE +  +     E +E  +++   +   
Sbjct:    64 KFLNTKDGRLVASLVAEFLQFFNLDFTLAVFHPETSTIQGL---EGRENLARDLGIIEAE 120

Query:   127 GD-SAPLLLDVL 137
             G    PLLL+V+
Sbjct:   121 GTVGGPLLLEVI 132

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=ISO

GO:0005815 "microtubule organizing center" evidence=IEA

GO:0006469 "negative regulation of protein kinase activity" evidence=ISO

GO:0008284 "positive regulation of cell proliferation" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO

GO:0030292 "protein tyrosine kinase inhibitor activity" evidence=ISO

GO:0030307 "positive regulation of cell growth" evidence=ISO

GO:0030335 "positive regulation of cell migration" evidence=ISO

GO:0034453 "microtubule anchoring" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0061099 "negative regulation of protein tyrosine kinase activity" evidence=ISO

UNIPROTKB|Q4V7C1 Fgfr1op "FGFR1 oncogene partner" [Rattus norvegicus (taxid:10116)]

 Score = 154 (59.3 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 44/132 (33%), Positives = 76/132 (57%)

Query:     7 EMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGLPPALLGSCNDRAK 66
             E  +L+ L+ +TLE  GVL +I+AELRA+VF A+EE+++V    E   P +    N+  K
Sbjct:    12 EDTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKV----ENKTPLV----NESLK 63

Query:    67 QLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNGYDLNKN 126
             +   +  GRL+ +L+ E+L +  L+ T+ V+ PE +  +     E +E  +++   +   
Sbjct:    64 KFLNTKDGRLVASLVAEFLQFFNLDFTLAVFHPETSTIQGL---EGRENLARDLGIIEAE 120

Query:   127 GD-SAPLLLDVL 137
             G    PLLL+V+
Sbjct:   121 GTVGGPLLLEVI 132

GO:0034453 "microtubule anchoring" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FQ24	TON1B_ARATH	No assigned EC number	0.7216	0.8761	0.7431	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	218
pfam09398	81	pfam09398, FOP_dimer, FOP N terminal dimerisation	3e-04

>gnl|CDD|150162 pfam09398, FOP_dimer, FOP N terminal dimerisation domain

 Score = 37.9 bits (88), Expect = 3e-04
 Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 4/78 (5%)

Query: 61  CNDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKN- 119
            N+  K+   +  GRL+  LI E+L +  L+ T+ V+ PE +L +     + +E  +K  
Sbjct: 5   VNENLKKFLNTKDGRLVAELIREFLQFFNLDFTLAVFQPEASLLE---GLDGRENLAKEL 61

Query: 120 GYDLNKNGDSAPLLLDVL 137
           G   +++G + PLLL+V+
Sbjct: 62  GIVESESGKNKPLLLEVI 79

Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to subcellular structures. This domain includes a Lis-homology motif. It forms an alpha helical bundle and is involved in dimerisation. Length = 81

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	218
PF09398	81	FOP_dimer: FOP N terminal dimerisation domain; Int	99.88
PF08513	27	LisH: LisH; InterPro: IPR013720 The LisH motif is	97.47
smart00667	34	LisH Lissencephaly type-1-like homology motif. Alp	96.41

>PF09398 FOP_dimer: FOP N terminal dimerisation domain; InterPro: IPR018993 Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to centrosomes

Probab=99.88  E-value=1.1e-23  Score=158.14  Aligned_cols=77  Identities=27%  Similarity=0.530  Sum_probs=60.7

Q ss_pred             CcccccccCCCchhHHHHHHHHHHHHHcCCccccchhhcccCCchHHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHH
Q 027836           61 CNDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNGYDLNKNGDSAPLLLDVLEG  139 (218)
Q Consensus        61 ~N~~~k~~~~s~eg~Lin~LI~EYLe~~gl~~TlsVF~~ESgl~~~~l~rEl~~L~~~lgl~~n~~~~~~PLL~~Ll~~  139 (218)
                      ||+++|+++++++|+++++||+|||+||||+||+|||.+|||+++....|  +.||+++|+.++..+++.||||.||++
T Consensus         5 ~ne~lkk~l~t~eg~Li~eLIrEyLef~~l~~TlsVf~~Es~~~~~~~~R--~~L~~eLgi~~~~~~~~~PLL~~lv~~   81 (81)
T PF09398_consen    5 VNENLKKFLSTKEGRLINELIREYLEFNNLDYTLSVFQPESGQPEEPLDR--EFLARELGISEDENSKSVPLLYELVSR   81 (81)
T ss_dssp             --HHHHHHHTSHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHT-TT----H--HHHHHHCT----CCCCTS-HHHHHHHC
T ss_pred             cchHHHHHhcCchhHHHHHHHHHHHHHcCCccHHHHHhhccCCCCCcCCH--HHHHHHcCCCCCCCCCCCCchHHHHhC
Confidence            89999999999999999999999999999999999999999999987776  579999999988878899999999973

This domain includes a Lis-homology motif. It forms an alpha-helical bundle and is involved in dimerisation []. ; GO: 0034453 microtubule anchoring, 0005813 centrosome; PDB: 2D68_A.

>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions

Probab=97.47  E-value=6.5e-05  Score=45.36  Aligned_cols=26  Identities=31%  Similarity=0.369  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHcCCccccchhhccc
Q 027836           76 LLTALICEYLDWAQLNHTMKVYLPEC  101 (218)
Q Consensus        76 Lin~LI~EYLe~~gl~~TlsVF~~ES  101 (218)
                      .+|.||.+||.++||..|..+|..|+
T Consensus         2 ~Ln~lI~~YL~~~Gy~~tA~~f~~Ea   27 (27)
T PF08513_consen    2 ELNQLIYDYLVENGYKETAKAFAKEA   27 (27)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence            58999999999999999999999886

The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.

>smart00667 LisH Lissencephaly type-1-like homology motif

Probab=96.41  E-value=0.0021  Score=38.68  Aligned_cols=30  Identities=30%  Similarity=0.294  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHcCCccccchhhcccCCc
Q 027836           75 RLLTALICEYLDWAQLNHTMKVYLPECNLQ  104 (218)
Q Consensus        75 ~Lin~LI~EYLe~~gl~~TlsVF~~ESgl~  104 (218)
                      ..++.+|.+||.+.||..|..+|..|++..
T Consensus         4 ~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~   33 (34)
T smart00667        4 SELNRLILEYLLRNGYEETAETLQKESGLS   33 (34)
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence            357789999999999999999999999874

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	218
2d68_A	82	FOP, FGFR1OP; alpha helical bundle, dimer, cell cy	7e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06

>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens} Length = 82

 Score = 55.7 bits (134), Expect = 7e-11
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%)

Query: 62  NDRAKQLHASPSGRLLTALICEYLDWAQLNHTMKVYLPECNLQKDAWKAELKEFSSKNGY 121
           N+  K+   +  GRL+ +L+ E+L +  L+ T+ V+ PE +  +     E    +   G 
Sbjct: 6   NESLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTLQGLEGRE--NLARDLGI 63

Query: 122 DLNKNGDSAPLLLDVLEGF 140
              +     PLLL+V+  +
Sbjct: 64  IEAEGTVGGPLLLEVIRRW 82

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 1e-06
 Identities = 35/257 (13%), Positives = 73/257 (28%), Gaps = 81/257 (31%)

Query: 1   MDD----YTREMMDL--KTLV-TRTLEKKGVLAKIRAELRASVFEAIEEEDRVIEKDEGL 53
           + +          +L  K L+ TR    K V   + A     +   ++     +  DE  
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTR---FKQVTDFLSAATTTHIS--LDHHSMTLTPDEVK 304

Query: 54  PPALLGSC-NDRAKQL-----HASPSGRLLTALICE-------------YLDWAQLNHTM 94
             +LL    + R + L       +P      ++I E             +++  +L   +
Sbjct: 305 --SLLLKYLDCRPQDLPREVLTTNP---RRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 95  KVYLPECNLQKDAWKAELKEFSSKNGYDLNKNGDSAPLLLDVL---------EGFL-KFE 144
           +  L    L+   ++      S         +     +LL ++            + K  
Sbjct: 360 ESSLN--VLEPAEYRKMFDRLSV-----FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412

Query: 145 NSSQA---------RITG-----RRQPDSESMSH---FESRNARRPSSSSVAGGLPP--- 184
             S            I       + + ++E   H    +  N  +   S     +PP   
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD--DLIPPYLD 470

Query: 185 ------LGRHLIGEQQG 195
                 +G HL   +  
Sbjct: 471 QYFYSHIGHHLKNIEHP 487

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00