Citrus Sinensis ID: 027850

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MAICRSGLFHLLVALVLSNTIATSNANVEGDALFALRRAVKDPQGVLQSWDPTLVDPCTWFHVTCDADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLEGPELMGFVRYDVGDCK
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccccccccccccEEEEEcccccEEEEEccccccEEEccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEEccccccccccccccccccccccccccEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccccccccccccEEEEEcccccEEEEEcEEccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcccccEEEcccccccccHHccccc
Coil and Loop (DISEMBL)
MAICRSGLFHLLVALVLSNtiatsnanVEGDALFALRRAvkdpqgvlqswdptlvdpctwfhvtcdadnrvtrldlgngklsgnlvpelgkLERLQYLELYMNNLAGQIPKELGQLKslisldlyhnnltgpippslsrlsnlkfLRLNgnkltgkipreltklgnlkildvsnndlcgtiptagsfskfseesfmnnprlegpelmgfvrydvgdck
Flexible Loop (DISEMBL)
MAICRSGLFHLLVALVLSNTIATSNANVEGDALFALRRAVKDPQGVLQSWDPTLVDPCTWFHVTCDADNRVTRLDlgngklsgnlvpelGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNnprlegpelmgfvrydvgdck
Low Complexity Region (SEG)
MAICRSGLFHLLVALVLSNTIATSNANVEGDALFALRRAVKDPQGVLQSWDPTLVDPCTWFHVTCDADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLEGPELMGFVRYDVGDCK
Disordered region (IsUnstruct)
**ICRSGLFHLLVALVLSNTIATSNANVEGDALFALRRAVKDPQGVLQSWDPTLVDPCTWFHVTCDADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSF******************LMGFVRYD*****
Disordered Region (DISOPRED)
***CRSGLFHLLVALVLSNTIATSNANVEGDALFALRRAVKDPQGVLQSWDPTLVDPCTWFHVTCDADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLEGPELMGFVRYDVGDCK
Disordered Region (DISEMBL)
MAICRSGLFHLLVALVLSNTIATSNANVEGDALFALRRAVKDPQGVLQSWDPTLVDPCTWFHVTCDADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLEGPELMGFVRYDVGDCK
Disordered Region (DISPRO)
*AICRSGLFHLLVALVLSNTIATSNANVEGDALFALRRAVKDPQGVLQSWDPTLVDPCTWFHVTCDADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLEGPELMGFVRYDV**CK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAICRSGLFHLLVALVLSNTIATSNANVEGDALFALRRAVKDPQGVLQSWDPTLVDPCTWFHVTCDADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLEGPELMGFVRYDVGDCK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	218	2.2.26 [Sep-21-2011]
Q94AG2	625	Somatic embryogenesis rec	no	no	0.903	0.315	0.590	1e-59
Q9XIC7	628	Somatic embryogenesis rec	no	no	0.830	0.288	0.602	9e-58
Q94F62	615	BRASSINOSTEROID INSENSITI	no	no	0.857	0.304	0.589	3e-57
Q9SKG5	620	Somatic embryogenesis rec	no	no	0.821	0.288	0.601	7e-55
Q8LPS5	601	Somatic embryogenesis rec	no	no	0.811	0.294	0.541	8e-50
Q8VYT3	648	Probable LRR receptor-lik	no	no	0.834	0.280	0.393	3e-31
Q8RY65	635	Protein NSP-INTERACTING K	no	no	0.724	0.248	0.446	9e-31
Q0WVM4	634	Probable LRR receptor-lik	no	no	0.788	0.271	0.389	2e-30
C0LGF4	591	LRR receptor-like serine/	no	no	0.862	0.318	0.402	2e-29
Q9LFS4	638	Protein NSP-INTERACTING K	no	no	0.871	0.297	0.376	6e-29

>sp|Q94AG2|SERK1_ARATH Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2

 Score =  229 bits (583), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 117/198 (59%), Positives = 147/198 (74%), Gaps = 1/198 (0%)

Query: 8   LFHLLVALVLSN-TIATSNANVEGDALFALRRAVKDPQGVLQSWDPTLVDPCTWFHVTCD 66
           +F LL  ++L N ++  ++AN+EGDAL  LR  + DP  VLQSWDPTLV+PCTWFHVTC+
Sbjct: 7   VFILLSLILLPNHSLWLASANLEGDALHTLRVTLVDPNNVLQSWDPTLVNPCTWFHVTCN 66

Query: 67  ADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYH 126
            +N V R+DLGN +LSG+LVPELG L+ LQYLELY NN+ G IP  LG L +L+SLDLY 
Sbjct: 67  NENSVIRVDLGNAELSGHLVPELGVLKNLQYLELYSNNITGPIPSNLGNLTNLVSLDLYL 126

Query: 127 NNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGS 186
           N+ +GPIP SL +LS L+FLRLN N LTG IP  LT +  L++LD+SNN L G++P  GS
Sbjct: 127 NSFSGPIPESLGKLSKLRFLRLNNNSLTGSIPMSLTNITTLQVLDLSNNRLSGSVPDNGS 186

Query: 187 FSKFSEESFMNNPRLEGP 204
           FS F+  SF NN  L GP
Sbjct: 187 FSLFTPISFANNLDLCGP 204

Dual specificity kinase acting on both serine/threonine-and tyrosine-containing substrates. Phosphorylates BRI1 on 'Ser-887' and CDC48 on at least one threonine residue and on 'Ser-41'. Confers embryogenic competence. Acts redundantly with SERK2 as a control point for sporophytic development controlling male gametophyte production. Involved in the brassinolide signaling pathway.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9XIC7|SERK2_ARATH Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1

 Score =  223 bits (567), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 109/181 (60%), Positives = 137/181 (75%)

Query: 24  SNANVEGDALFALRRAVKDPQGVLQSWDPTLVDPCTWFHVTCDADNRVTRLDLGNGKLSG 83
           +++N+EGDAL +LR  + DP  VLQSWDPTLV+PCTWFHVTC+ +N V R+DLGN  LSG
Sbjct: 27  ASSNMEGDALHSLRANLVDPNNVLQSWDPTLVNPCTWFHVTCNNENSVIRVDLGNADLSG 86

Query: 84  NLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNL 143
            LVP+LG+L+ LQYLELY NN+ G +P +LG L +L+SLDLY N+ TGPIP SL +L  L
Sbjct: 87  QLVPQLGQLKNLQYLELYSNNITGPVPSDLGNLTNLVSLDLYLNSFTGPIPDSLGKLFKL 146

Query: 144 KFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLEG 203
           +FLRLN N LTG IP  LT +  L++LD+SNN L G++P  GSFS F+  SF NN  L G
Sbjct: 147 RFLRLNNNSLTGPIPMSLTNIMTLQVLDLSNNRLSGSVPDNGSFSLFTPISFANNLDLCG 206

Query: 204 P 204
           P
Sbjct: 207 P 207

Serine/threonine-kinase involved in brassinosteroid-dependent and -independent signaling pathways. Acts redundantly with SERK1 as a control point for sporophytic development controlling male gametophyte production.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q94F62|BAK1_ARATH BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2

 Score =  221 bits (563), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 112/190 (58%), Positives = 138/190 (72%), Gaps = 3/190 (1%)

Query: 8   LFHLLVALVLSNTIATSNANVEGDALFALRRAVKDPQGVLQSWDPTLVDPCTWFHVTCDA 67
            F L++ L L   +   + N EGDAL AL+ ++ DP  VLQSWD TLV PCTWFHVTC++
Sbjct: 10  FFWLILVLDL---VLRVSGNAEGDALSALKNSLADPNKVLQSWDATLVTPCTWFHVTCNS 66

Query: 68  DNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHN 127
           DN VTR+DLGN  LSG LV +LG+L  LQYLELY NN+ G IP++LG L  L+SLDLY N
Sbjct: 67  DNSVTRVDLGNANLSGQLVMQLGQLPNLQYLELYSNNITGTIPEQLGNLTELVSLDLYLN 126

Query: 128 NLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSF 187
           NL+GPIP +L RL  L+FLRLN N L+G+IPR LT +  L++LD+SNN L G IP  GSF
Sbjct: 127 NLSGPIPSTLGRLKKLRFLRLNNNSLSGEIPRSLTAVLTLQVLDLSNNPLTGDIPVNGSF 186

Query: 188 SKFSEESFMN 197
           S F+  SF N
Sbjct: 187 SLFTPISFAN 196

Dual specificity kinase acting on both serine/threonine-and tyrosine-containing substrates. Controls the expression of genes associated with innate immunity in the absence of pathogens or elicitors. Involved in brassinosteroid (BR) signal transduction. Phosphorylates BRI1. May be involved in changing the equilibrium between plasma membrane-located BRI1 homodimers and endocytosed BRI1-BAK1 heterodimers. Interaction with MSBP1 stimulates the endocytosis of BAK1 and suppresses brassinosteroid signaling. Acts in pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI) via its interaction with FLS2 and the phosphorylation of BIK1. Involved in programmed cell death (PCD) control. Positively regulates the BR-dependent plant growth pathway and negatively regulates the BR-independent cell-death pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SKG5|SERK4_ARATH Somatic embryogenesis receptor kinase 4 OS=Arabidopsis thaliana GN=SERK4 PE=1 SV=2

 Score =  213 bits (543), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 110/183 (60%), Positives = 135/183 (73%), Gaps = 4/183 (2%)

Query: 26  ANVEGDALFALRRAVK--DP-QGVLQSWDPTLVDPCTWFHVTCDADNRVTRLDLGNGKLS 82
            N EGDAL  L+ ++   DP   VLQSWD TLV PCTWFHVTC+ +N+VTR+DLGN KLS
Sbjct: 29  GNAEGDALTQLKNSLSSGDPANNVLQSWDATLVTPCTWFHVTCNPENKVTRVDLGNAKLS 88

Query: 83  GNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSN 142
           G LVPELG+L  LQYLELY NN+ G+IP+ELG L  L+SLDLY N+++GPIP SL +L  
Sbjct: 89  GKLVPELGQLLNLQYLELYSNNITGEIPEELGDLVELVSLDLYANSISGPIPSSLGKLGK 148

Query: 143 LKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLE 202
           L+FLRLN N L+G+IP  LT +  L++LD+SNN L G IP  GSFS F+  SF NN   +
Sbjct: 149 LRFLRLNNNSLSGEIPMTLTSV-QLQVLDISNNRLSGDIPVNGSFSLFTPISFANNSLTD 207

Query: 203 GPE 205
            PE
Sbjct: 208 LPE 210

Dual specificity kinase acting on both serine/threonine-and tyrosine-containing substrates. Positively regulates the BR-dependent plant growth pathway and negatively regulates the BR-independent cell-death pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8LPS5|SERK5_ARATH Somatic embryogenesis receptor kinase 5 OS=Arabidopsis thaliana GN=SERK5 PE=1 SV=2

 Score =  196 bits (499), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 98/181 (54%), Positives = 127/181 (70%), Gaps = 4/181 (2%)

Query: 21  IATSNANVEGDALFALRRAVKD---PQGVLQSWDPTLVDPCTWFHVTCDADNRVTRLDLG 77
           ++      + DAL ALR ++        +LQSW+ T V PC+WFHVTC+ +N VTRLDLG
Sbjct: 19  VSRVTGKTQVDALIALRSSLSSGDHTNNILQSWNATHVTPCSWFHVTCNTENSVTRLDLG 78

Query: 78  NGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSL 137
           +  LSG LVP+L +L  LQYLEL+ NN+ G+IP+ELG L  L+SLDL+ NN++GPIP SL
Sbjct: 79  SANLSGELVPQLAQLPNLQYLELFNNNITGEIPEELGDLMELVSLDLFANNISGPIPSSL 138

Query: 138 SRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMN 197
            +L  L+FLRL  N L+G+IPR LT L  L +LD+SNN L G IP  GSFS+F+  SF N
Sbjct: 139 GKLGKLRFLRLYNNSLSGEIPRSLTALP-LDVLDISNNRLSGDIPVNGSFSQFTSMSFAN 197

Query: 198 N 198
           N
Sbjct: 198 N 198

Serine/threonine-kinase of unknown function.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VYT3|Y4052_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g30520 OS=Arabidopsis thaliana GN=At4g30520 PE=2 SV=1

 Score =  135 bits (339), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 74/188 (39%), Positives = 110/188 (58%), Gaps = 6/188 (3%)

Query: 8   LFHLLVALVLSNTIATSNANVEGDALFALRRAVKDPQGVLQSWDPTLVDPCTWFHVTCDA 67
           L+  L     + T+++   N E +AL ++R  + DP G L +WD   VDPC+W  +TC  
Sbjct: 16  LYSFLFLCFSTLTLSSEPRNPEVEALISIRNNLHDPHGALNNWDEFSVDPCSWAMITCSP 75

Query: 68  DNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHN 127
           DN V  L   +  LSG L   +G L  L+ + L  NN++G+IP ELG L  L +LDL +N
Sbjct: 76  DNLVIGLGAPSQSLSGGLSESIGNLTNLRQVSLQNNNISGKIPPELGFLPKLQTLDLSNN 135

Query: 128 NLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSF 187
             +G IP S+ +LS+L++LRLN N L+G  P  L+++ +L  LD+S N+L G +P     
Sbjct: 136 RFSGDIPVSIDQLSSLQYLRLNNNSLSGPFPASLSQIPHLSFLDLSYNNLSGPVP----- 190

Query: 188 SKFSEESF 195
            KF   +F
Sbjct: 191 -KFPARTF 197

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8RY65|NIK2_ARATH Protein NSP-INTERACTING KINASE 2 OS=Arabidopsis thaliana GN=NIK2 PE=1 SV=1

 Score =  133 bits (335), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 71/159 (44%), Positives = 96/159 (60%), Gaps = 1/159 (0%)

Query: 26  ANVEGDALFALRRAVKDPQGVLQSWDPTLVDPCTWFHVTCDADNRVTRLDLGNGKLSGNL 85
            N E  AL  ++ ++ DP GVL +WD T VDPC+W  +TC +D  V RL+  +  LSG L
Sbjct: 39  VNFEVVALIGIKSSLTDPHGVLMNWDDTAVDPCSWNMITC-SDGFVIRLEAPSQNLSGTL 97

Query: 86  VPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKF 145
              +G L  LQ + L  N + G IP E+G+L  L +LDL  NN TG IP +LS   NL++
Sbjct: 98  SSSIGNLTNLQTVLLQNNYITGNIPHEIGKLMKLKTLDLSTNNFTGQIPFTLSYSKNLQY 157

Query: 146 LRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTA 184
           LR+N N LTG IP  L  +  L  LD+S N+L G +P +
Sbjct: 158 LRVNNNSLTGTIPSSLANMTQLTFLDLSYNNLSGPVPRS 196

Involved in defense response to geminivirus infection (By similarity). Phosphorylates RPL10A in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q0WVM4|Y2239_ARATH Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1

 Score =  132 bits (333), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/172 (38%), Positives = 108/172 (62%)

Query: 11  LLVALVLSNTIATSNANVEGDALFALRRAVKDPQGVLQSWDPTLVDPCTWFHVTCDADNR 70
           LL+   ++ ++++   N E +AL  ++  + DP GV ++WD   VDPC+W  ++C +DN 
Sbjct: 16  LLLCFFVTCSLSSEPRNPEVEALINIKNELHDPHGVFKNWDEFSVDPCSWTMISCSSDNL 75

Query: 71  VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLT 130
           V  L   +  LSG L   +G L  L+ + L  NN++G+IP E+  L  L +LDL +N  +
Sbjct: 76  VIGLGAPSQSLSGTLSGSIGNLTNLRQVSLQNNNISGKIPPEICSLPKLQTLDLSNNRFS 135

Query: 131 GPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIP 182
           G IP S+++LSNL++LRLN N L+G  P  L+++ +L  LD+S N+L G +P
Sbjct: 136 GEIPGSVNQLSNLQYLRLNNNSLSGPFPASLSQIPHLSFLDLSYNNLRGPVP 187

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGF4|FEI1_ARATH LRR receptor-like serine/threonine-protein kinase FEI 1 OS=Arabidopsis thaliana GN=FEI1 PE=1 SV=1

 Score =  129 bits (323), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/189 (40%), Positives = 102/189 (53%), Gaps = 1/189 (0%)

Query: 29  EGDALFALRRAVKDPQGVLQSWDPTLVDPCTWFHVTCDADN-RVTRLDLGNGKLSGNLVP 87
           +G+AL + R AV      +  W P   DPC W  VTCDA   RV  L+L   K+ G L P
Sbjct: 33  DGEALLSFRNAVTRSDSFIHQWRPEDPDPCNWNGVTCDAKTKRVITLNLTYHKIMGPLPP 92

Query: 88  ELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLR 147
           ++GKL+ L+ L L+ N L G IP  LG   +L  + L  N  TGPIP  +  L  L+ L 
Sbjct: 93  DIGKLDHLRLLMLHNNALYGAIPTALGNCTALEEIHLQSNYFTGPIPAEMGDLPGLQKLD 152

Query: 148 LNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLEGPELM 207
           ++ N L+G IP  L +L  L   +VSNN L G IP+ G  S FS+ SF+ N  L G  + 
Sbjct: 153 MSSNTLSGPIPASLGQLKKLSNFNVSNNFLVGQIPSDGVLSGFSKNSFIGNLNLCGKHVD 212

Query: 208 GFVRYDVGD 216
              + D G+
Sbjct: 213 VVCQDDSGN 221

Involved in the signaling pathway that regulates cell wall function, including cellulose biosynthesis, likely via an 1-aminocyclopropane-1-carboxylic acid (ACC)-mediated signal (a precursor of ethylene).

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LFS4|NIK1_ARATH Protein NSP-INTERACTING KINASE 1 OS=Arabidopsis thaliana GN=NIK1 PE=1 SV=1

 Score =  127 bits (319), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 75/199 (37%), Positives = 110/199 (55%), Gaps = 9/199 (4%)

Query: 3   ICRSGLFHLLVALVLSNTIATSNANVEGDALFALRRAVKDPQGVLQSWDPTLVDPCTWFH 62
            C  G   LL + V    ++    N E  AL  ++ ++ DP GVL +WD   VDPC+W  
Sbjct: 16  FCFLGFLCLLCSSV-HGLLSPKGVNFEVQALMDIKASLHDPHGVLDNWDRDAVDPCSWTM 74

Query: 63  VTCDADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISL 122
           VTC ++N V  L   +  LSG L P +  L  L+ + L  NN+ G+IP E+G+L  L +L
Sbjct: 75  VTCSSENFVIGLGTPSQNLSGTLSPSITNLTNLRIVLLQNNNIKGKIPAEIGRLTRLETL 134

Query: 123 DLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIP 182
           DL  N   G IP S+  L +L++LRLN N L+G  P  L+ +  L  LD+S N+L G +P
Sbjct: 135 DLSDNFFHGEIPFSVGYLQSLQYLRLNNNSLSGVFPLSLSNMTQLAFLDLSYNNLSGPVP 194

Query: 183 TAGSFSKFSEESF--MNNP 199
                 +F+ ++F  + NP
Sbjct: 195 ------RFAAKTFSIVGNP 207

Involved in defense response to geminivirus infection via regulation of the nuclear trafficking of RPL10A. Phosphorylates RPL10A in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
225425162	219	PREDICTED: somatic embryogenesis recepto	0.963	0.958	0.816	5e-95
255543144	216	serine-threonine protein kinase, plant-t	0.889	0.898	0.855	8e-93
224057810	217	predicted protein [Populus trichocarpa]	0.990	0.995	0.783	9e-93
358249132	217	uncharacterized protein LOC100778819 pre	0.977	0.981	0.761	1e-89
224072512	216	predicted protein [Populus trichocarpa]	0.876	0.884	0.832	2e-87
449445584	251	PREDICTED: somatic embryogenesis recepto	0.871	0.756	0.826	4e-87
449528539	224	PREDICTED: somatic embryogenesis recepto	0.871	0.848	0.826	4e-87
357501353	220	Somatic embryogenesis receptor kinase [M	0.954	0.945	0.746	9e-85
224286330	211	unknown [Picea sitchensis]	0.967	1.0	0.720	9e-82
147769494	216	hypothetical protein VITISV_035126 [Viti	0.880	0.888	0.7	2e-78

>gi|225425162|ref|XP_002263688.1| PREDICTED: somatic embryogenesis receptor kinase 1 [Vitis vinifera] gi|296088725|emb|CBI38175.3| unnamed protein product [Vitis vinifera]

 Score =  352 bits (904), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 174/213 (81%), Positives = 192/213 (90%), Gaps = 3/213 (1%)

Query: 9   FHLLVALVLSNTIAT--SNANVEGDALFALRRAVKDPQGVLQSWDPTLVDPCTWFHVTCD 66
           +H L+AL L    +T  +NAN+EGDAL+ALRRAV+DP+ VLQSWDPTLVDPCTWFHVTCD
Sbjct: 7   YHHLLALFLLTWASTVPTNANMEGDALYALRRAVEDPEHVLQSWDPTLVDPCTWFHVTCD 66

Query: 67  ADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYH 126
           +DNRVTRLDLGN KLSGNLVPELGKLERLQYLELYMNNL G IP +LG LK+L+SLDL+H
Sbjct: 67  SDNRVTRLDLGNAKLSGNLVPELGKLERLQYLELYMNNLVGPIPVQLGGLKNLVSLDLFH 126

Query: 127 NNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGS 186
           NNLTG IPPSLS+LSNL+FLRLN N+L+G IPRELTKLG+LKILDVSNNDLCGTIPT GS
Sbjct: 127 NNLTGSIPPSLSKLSNLRFLRLNSNRLSGTIPRELTKLGSLKILDVSNNDLCGTIPTTGS 186

Query: 187 FSKFSEESFMNNPRLEGPELMGFVRYDV-GDCK 218
           FSKFSEESFMNNPRLEGPELMGFVRYD  G CK
Sbjct: 187 FSKFSEESFMNNPRLEGPELMGFVRYDTRGGCK 219

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543144|ref|XP_002512635.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223548596|gb|EEF50087.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  345 bits (885), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 166/194 (85%), Positives = 181/194 (93%)

Query: 22  ATSNANVEGDALFALRRAVKDPQGVLQSWDPTLVDPCTWFHVTCDADNRVTRLDLGNGKL 81
           A +NAN+EGDAL+ALRRAVKDP  VLQSWDPTLVDPCTWFHVTCD DNRVTRLDLGN KL
Sbjct: 20  APTNANLEGDALYALRRAVKDPGLVLQSWDPTLVDPCTWFHVTCDTDNRVTRLDLGNAKL 79

Query: 82  SGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLS 141
           SG+LVPELGKLERLQYLELYMN L G IPKELG LKSL+SLDLY+NNLTG IP SLS+L+
Sbjct: 80  SGSLVPELGKLERLQYLELYMNELVGPIPKELGNLKSLVSLDLYNNNLTGSIPASLSKLA 139

Query: 142 NLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRL 201
           N+KFLRLN N+LTG+IPRELTKLGN+K+LDVSNNDLCGTIPT+GSFSKFSEESF+NNPRL
Sbjct: 140 NIKFLRLNSNRLTGRIPRELTKLGNIKMLDVSNNDLCGTIPTSGSFSKFSEESFVNNPRL 199

Query: 202 EGPELMGFVRYDVG 215
           EGPELMGFVRYD G
Sbjct: 200 EGPELMGFVRYDAG 213

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057810|ref|XP_002299335.1| predicted protein [Populus trichocarpa] gi|222846593|gb|EEE84140.1| predicted protein [Populus trichocarpa]

 Score =  345 bits (884), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 170/217 (78%), Positives = 188/217 (86%), Gaps = 1/217 (0%)

Query: 3   ICRSGLFHLLVALVLSNTIATSNANVEGDALFALRRAVKDPQGVLQSWDPTLVDPCTWFH 62
           +  S  FHLLV  +LS   + +NAN+EGDAL+ALRRAVKDP  VLQSWDPTL DPCTWFH
Sbjct: 1   MASSTAFHLLVLFLLSTIQSPTNANLEGDALYALRRAVKDPGHVLQSWDPTLTDPCTWFH 60

Query: 63  VTCDADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISL 122
           VTCD DNRVTRLDLGN KLSG+LVPELGKL  LQYLELYMN L G IP+ELG LKSL+SL
Sbjct: 61  VTCDGDNRVTRLDLGNAKLSGSLVPELGKLVGLQYLELYMNELVGPIPRELGNLKSLVSL 120

Query: 123 DLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIP 182
           DLYHNNLTG IP SLS+LSNLKFLRLNGN+LTG+IPRELTKL +LKILDVSNNDLCGTIP
Sbjct: 121 DLYHNNLTGTIPASLSKLSNLKFLRLNGNRLTGRIPRELTKLDSLKILDVSNNDLCGTIP 180

Query: 183 TAGSFSKFSEESFMNNPRLEGPELMGFVRYD-VGDCK 218
           T+GSFSK +EESF+NN RLEGPEL+GFVRY+  G CK
Sbjct: 181 TSGSFSKLTEESFVNNSRLEGPELVGFVRYNAAGSCK 217

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249132|ref|NP_001239998.1| uncharacterized protein LOC100778819 precursor [Glycine max] gi|255637326|gb|ACU18993.1| unknown [Glycine max]

 Score =  334 bits (857), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 163/214 (76%), Positives = 185/214 (86%), Gaps = 1/214 (0%)

Query: 6   SGLFHLLVALVLSNTIATSNANVEGDALFALRRAVKDPQGVLQSWDPTLVDPCTWFHVTC 65
           S LF++L   +LS+  A  NAN EGDALFA RRAVKDP  VL+SWDPTLVDPCTWFH+TC
Sbjct: 4   SQLFNVLAIFLLSDPFAVVNANSEGDALFAFRRAVKDPNNVLESWDPTLVDPCTWFHITC 63

Query: 66  DADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLY 125
           D D RVTRLDLG+ KLSG+LVPELG+L+RLQ+LELY N+L G IPKELG+LK+L+SL LY
Sbjct: 64  DDDKRVTRLDLGHAKLSGHLVPELGRLQRLQFLELYKNDLMGPIPKELGELKNLLSLGLY 123

Query: 126 HNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAG 185
            NNLTG IP +LS LSN+KFLRLN NKLTG+IPRELTKLGNLKILD+SNNDLCGT PT G
Sbjct: 124 QNNLTGSIPATLSNLSNIKFLRLNSNKLTGRIPRELTKLGNLKILDLSNNDLCGTFPTYG 183

Query: 186 SFSKFSEESFMNNPRLEGPELMGFVRYDVGD-CK 218
           SFSKFS+ESF NNPRL+GPELMGFVRYD G+ CK
Sbjct: 184 SFSKFSQESFKNNPRLKGPELMGFVRYDTGESCK 217

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072512|ref|XP_002303765.1| predicted protein [Populus trichocarpa] gi|222841197|gb|EEE78744.1| predicted protein [Populus trichocarpa]

 Score =  327 bits (839), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 159/191 (83%), Positives = 174/191 (91%)

Query: 21  IATSNANVEGDALFALRRAVKDPQGVLQSWDPTLVDPCTWFHVTCDADNRVTRLDLGNGK 80
           +A +NAN+EGDAL+ALRRAVKDP  VLQSWDP LVDPCTWFHVTCD DNRVTRLDLGN K
Sbjct: 19  LALTNANLEGDALYALRRAVKDPGHVLQSWDPNLVDPCTWFHVTCDGDNRVTRLDLGNAK 78

Query: 81  LSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRL 140
           LSG+LVPELGKL RLQYLELYMN LAG IP+ELG LKSL+SLDLYHNNLTG IP SLS+L
Sbjct: 79  LSGSLVPELGKLVRLQYLELYMNELAGPIPRELGNLKSLVSLDLYHNNLTGTIPASLSKL 138

Query: 141 SNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPR 200
           SNLKFLRLN N+LTG+IPRELTKL +LKI+DVSNNDLCGTIP +GSFSKF+EESF+NN R
Sbjct: 139 SNLKFLRLNSNRLTGRIPRELTKLESLKIIDVSNNDLCGTIPASGSFSKFTEESFVNNSR 198

Query: 201 LEGPELMGFVR 211
           LEGPELMGF R
Sbjct: 199 LEGPELMGFNR 209

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445584|ref|XP_004140552.1| PREDICTED: somatic embryogenesis receptor kinase 1-like, partial [Cucumis sativus]

 Score =  326 bits (836), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 157/190 (82%), Positives = 170/190 (89%)

Query: 26  ANVEGDALFALRRAVKDPQGVLQSWDPTLVDPCTWFHVTCDADNRVTRLDLGNGKLSGNL 85
           +N EGDAL+ALRR+VKDP  VLQSWDPTLVDPCTWFHVTCD+ N VTRLDLGN KLSGNL
Sbjct: 59  SNSEGDALYALRRSVKDPNNVLQSWDPTLVDPCTWFHVTCDSANHVTRLDLGNAKLSGNL 118

Query: 86  VPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKF 145
           VPELG LE LQYLELYMN L G IPKE+G+LKSLISLDLYHNNLT  IP SL  L NL F
Sbjct: 119 VPELGNLEHLQYLELYMNELVGPIPKEIGRLKSLISLDLYHNNLTASIPSSLKNLHNLNF 178

Query: 146 LRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLEGPE 205
           LRLNGNKL+G+IPR+LTKLGNLKI+DVS+NDLCGTIPT+GSFSKFSEESF NNPRLEGPE
Sbjct: 179 LRLNGNKLSGRIPRQLTKLGNLKIIDVSDNDLCGTIPTSGSFSKFSEESFKNNPRLEGPE 238

Query: 206 LMGFVRYDVG 215
           LMGFVRY+ G
Sbjct: 239 LMGFVRYENG 248

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449528539|ref|XP_004171261.1| PREDICTED: somatic embryogenesis receptor kinase 1-like [Cucumis sativus]

 Score =  326 bits (835), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 157/190 (82%), Positives = 170/190 (89%)

Query: 26  ANVEGDALFALRRAVKDPQGVLQSWDPTLVDPCTWFHVTCDADNRVTRLDLGNGKLSGNL 85
           +N EGDAL+ALRR+VKDP  VLQSWDPTLVDPCTWFHVTCD+ N VTRLDLGN KLSGNL
Sbjct: 32  SNSEGDALYALRRSVKDPNNVLQSWDPTLVDPCTWFHVTCDSANHVTRLDLGNAKLSGNL 91

Query: 86  VPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKF 145
           VPELG LE LQYLELYMN L G IPKE+G+LKSLISLDLYHNNLT  IP SL  L NL F
Sbjct: 92  VPELGNLEHLQYLELYMNELVGPIPKEIGRLKSLISLDLYHNNLTASIPSSLKNLHNLNF 151

Query: 146 LRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLEGPE 205
           LRLNGNKL+G+IPR+LTKLGNLKI+DVS+NDLCGTIPT+GSFSKFSEESF NNPRLEGPE
Sbjct: 152 LRLNGNKLSGRIPRQLTKLGNLKIIDVSDNDLCGTIPTSGSFSKFSEESFKNNPRLEGPE 211

Query: 206 LMGFVRYDVG 215
           LMGFVRY+ G
Sbjct: 212 LMGFVRYENG 221

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357501353|ref|XP_003620965.1| Somatic embryogenesis receptor kinase [Medicago truncatula] gi|355495980|gb|AES77183.1| Somatic embryogenesis receptor kinase [Medicago truncatula]

 Score =  318 bits (815), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 156/209 (74%), Positives = 173/209 (82%), Gaps = 1/209 (0%)

Query: 11  LLVALVLSNTIATSNANVEGDALFALRRAVKDPQGVLQSWDPTLVDPCTWFHVTCDADNR 70
           +   L+LS     +NAN EGDAL+A RRAVKDP  +LQSWDPTLVDPCTWFHVTCD DN 
Sbjct: 12  IFTILLLSYPFDIANANSEGDALYAFRRAVKDPNNILQSWDPTLVDPCTWFHVTCDRDNH 71

Query: 71  VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLT 130
           VTRLDLG+ KLSG+LVP+LG L  LQ+LELY N L G IPKELG LK+LISL LYHNNLT
Sbjct: 72  VTRLDLGHAKLSGHLVPQLGNLHHLQFLELYENELVGPIPKELGNLKNLISLGLYHNNLT 131

Query: 131 GPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKF 190
             IPP+LS LSN+KFLRLN NKLTG+IPRELTKL NLKILD+SNNDLCGT PT GSFS  
Sbjct: 132 ASIPPTLSNLSNIKFLRLNNNKLTGRIPRELTKLKNLKILDLSNNDLCGTFPTYGSFSNL 191

Query: 191 SEESFMNNPRLEGPELMGFVRYDV-GDCK 218
           S++SF NNPRL GPELMGFVRYDV G+CK
Sbjct: 192 SQQSFKNNPRLTGPELMGFVRYDVGGNCK 220

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224286330|gb|ACN40873.1| unknown [Picea sitchensis]

 Score =  308 bits (789), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 157/218 (72%), Positives = 181/218 (83%), Gaps = 7/218 (3%)

Query: 1   MAICRSGLFHLLVALVLSNTIATSNANVEGDALFALRRAVKDPQGVLQSWDPTLVDPCTW 60
           M  CR  LF LL+A   S  +A   AN EGDAL+ALRR + DP+ VLQSWDPTLV+PCTW
Sbjct: 1   MEDCRV-LFMLLLAF--SVNVA---ANSEGDALYALRRNLHDPENVLQSWDPTLVNPCTW 54

Query: 61  FHVTCDADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLI 120
           FHVTCD DNRVTRLDLGN +LSG+LVP+LG+L  LQYLELY NN+ G+IPKELG LKSL+
Sbjct: 55  FHVTCDRDNRVTRLDLGNARLSGSLVPDLGRLTHLQYLELYKNNIVGRIPKELGNLKSLV 114

Query: 121 SLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGT 180
           SLDLYHNNL+G IP SL +L +L+FLRLNGNKLTG+IPREL  L +LKI+D+S NDLCGT
Sbjct: 115 SLDLYHNNLSGDIPASLGKLKSLRFLRLNGNKLTGRIPRELMNLSSLKIVDLSENDLCGT 174

Query: 181 IPTAGSFSKFSEESFMNNPRLEGPELMGFVRYDVGDCK 218
           IPT+GSFSKFSE+SF NNPRL GPELMG V YD+G CK
Sbjct: 175 IPTSGSFSKFSEKSFENNPRLNGPELMGSVVYDLG-CK 211

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147769494|emb|CAN61408.1| hypothetical protein VITISV_035126 [Vitis vinifera]

 Score =  297 bits (760), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 154/220 (70%), Positives = 170/220 (77%), Gaps = 28/220 (12%)

Query: 1   MAICRSGLFHLLVALVLSNTIAT--SNANVEGDALFALRRAVKDPQGVLQSWDPTLVDPC 58
           MAI     +H L+AL L    +T  +NAN+EGDAL+ALRRAV+DP+ VLQSWDPTLVDPC
Sbjct: 1   MAIWAQ--YHHLLALFLLTWASTVPTNANMEGDALYALRRAVEDPEHVLQSWDPTLVDPC 58

Query: 59  TWFHVTCDADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKS 118
           TWFHVTCD+DNRVTRLDLGN KLSGNLVPELGKLERLQYLELYMNNL G IP +LG LK+
Sbjct: 59  TWFHVTCDSDNRVTRLDLGNAKLSGNLVPELGKLERLQYLELYMNNLVGPIPVQLGGLKN 118

Query: 119 LISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLC 178
           L+SLDL+HNNLTG IPPSLS+LSNL+F                        LDVSNNDLC
Sbjct: 119 LVSLDLFHNNLTGSIPPSLSKLSNLRF------------------------LDVSNNDLC 154

Query: 179 GTIPTAGSFSKFSEESFMNNPRLEGPELMGFVRYDVGDCK 218
           GTIPT GSFSKFSEESFMNNPRLEGPELMGFV +   D K
Sbjct: 155 GTIPTTGSFSKFSEESFMNNPRLEGPELMGFVEWVWTDLK 194

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
TAIR|locus:2178968	218	AT5G21090 [Arabidopsis thalian	0.954	0.954	0.652	5.5e-70
TAIR|locus:2013021	625	SERK1 "somatic embryogenesis r	0.903	0.315	0.590	2.5e-58
TAIR|locus:2026097	628	SERK2 "somatic embryogenesis r	0.908	0.315	0.575	4e-58
TAIR|locus:2040461	620	SERK4 "somatic embryogenesis r	0.912	0.320	0.568	4.8e-55
TAIR|locus:2040471	601	SERK5 "somatic embryogenesis r	0.793	0.287	0.561	2.3e-48
TAIR|locus:2101064	248	AT3G43740 [Arabidopsis thalian	0.788	0.693	0.502	8e-37
TAIR|locus:2036636	632	NIK3 "NSP-interacting kinase 3	0.761	0.262	0.437	2.9e-32
TAIR|locus:2118811	648	SARK "SENESCENCE-ASSOCIATED RE	0.802	0.270	0.405	8.8e-32
TAIR|locus:2061466	634	AT2G23950 [Arabidopsis thalian	0.788	0.271	0.389	1.3e-30
TAIR|locus:2058759	589	FEI2 "FEI 2" [Arabidopsis thal	0.944	0.349	0.4	3.4e-30

TAIR|locus:2178968 AT5G21090 [Arabidopsis thaliana (taxid:3702)]

 Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
 Identities = 137/210 (65%), Positives = 163/210 (77%)

Query:     8 LFHLLVALVLSNTIATSNANVEGDALFALRRAVKDPQGVLQSWDPTLVDPCTWFHVTCDA 67
             LF   + L L+  I    AN EGDAL+ALRR++ DP  VLQSWDPTLV+PCTWFHVTC+ 
Sbjct:    10 LFAASLTLTLA-LIHLVEANSEGDALYALRRSLTDPDHVLQSWDPTLVNPCTWFHVTCNQ 68

Query:    68 DNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHN 127
             DNRVTR+DLGN  LSG+L PELGKLE LQYLELY NN+ G IP ELG LK+LISLDLY+N
Sbjct:    69 DNRVTRVDLGNSNLSGHLAPELGKLEHLQYLELYKNNIQGTIPSELGNLKNLISLDLYNN 128

Query:   128 NLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSF 187
             NLTG +P SL +L +L FLRLN N+LTG IPR LT + +LK++DVS+NDLCGTIPT G F
Sbjct:   129 NLTGIVPTSLGKLKSLVFLRLNDNRLTGPIPRALTAIPSLKVVDVSSNDLCGTIPTNGPF 188

Query:   188 SKFSEESFMNNPRLEGPELMGFVRYDVGDC 217
             +    ++F NNPRLEGPEL+G   YD  +C
Sbjct:   189 AHIPLQNFENNPRLEGPELLGLASYDT-NC 217

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2013021 SERK1 "somatic embryogenesis receptor-like kinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 117/198 (59%), Positives = 147/198 (74%)

Query:     8 LFHLLVALVLSN-TIATSNANVEGDALFALRRAVKDPQGVLQSWDPTLVDPCTWFHVTCD 66
             +F LL  ++L N ++  ++AN+EGDAL  LR  + DP  VLQSWDPTLV+PCTWFHVTC+
Sbjct:     7 VFILLSLILLPNHSLWLASANLEGDALHTLRVTLVDPNNVLQSWDPTLVNPCTWFHVTCN 66

Query:    67 ADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYH 126
              +N V R+DLGN +LSG+LVPELG L+ LQYLELY NN+ G IP  LG L +L+SLDLY 
Sbjct:    67 NENSVIRVDLGNAELSGHLVPELGVLKNLQYLELYSNNITGPIPSNLGNLTNLVSLDLYL 126

Query:   127 NNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGS 186
             N+ +GPIP SL +LS L+FLRLN N LTG IP  LT +  L++LD+SNN L G++P  GS
Sbjct:   127 NSFSGPIPESLGKLSKLRFLRLNNNSLTGSIPMSLTNITTLQVLDLSNNRLSGSVPDNGS 186

Query:   187 FSKFSEESFMNNPRLEGP 204
             FS F+  SF NN  L GP
Sbjct:   187 FSLFTPISFANNLDLCGP 204

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016301 "kinase activity" evidence=ISS

GO:0042802 "identical protein binding" evidence=IPI

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0046777 "protein autophosphorylation" evidence=TAS

GO:0009556 "microsporogenesis" evidence=IGI;IMP

GO:0010152 "pollen maturation" evidence=IMP

GO:0043234 "protein complex" evidence=IPI

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IGI;IMP

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0007030 "Golgi organization" evidence=IGI

GO:0010227 "floral organ abscission" evidence=IGI

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0009880 "embryonic pattern specification" evidence=RCA

GO:0010072 "primary shoot apical meristem specification" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010431 "seed maturation" evidence=RCA

GO:0016310 "phosphorylation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045595 "regulation of cell differentiation" evidence=RCA

GO:0051301 "cell division" evidence=RCA

TAIR|locus:2026097 SERK2 "somatic embryogenesis receptor-like kinase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 114/198 (57%), Positives = 146/198 (73%)

Query:     7 GLFHLLVALVLSNTIATSNANVEGDALFALRRAVKDPQGVLQSWDPTLVDPCTWFHVTCD 66
             G   L+  L+L N++  +++N+EGDAL +LR  + DP  VLQSWDPTLV+PCTWFHVTC+
Sbjct:    10 GFVCLISLLLLFNSLWLASSNMEGDALHSLRANLVDPNNVLQSWDPTLVNPCTWFHVTCN 69

Query:    67 ADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYH 126
              +N V R+DLGN  LSG LVP+LG+L+ LQYLELY NN+ G +P +LG L +L+SLDLY 
Sbjct:    70 NENSVIRVDLGNADLSGQLVPQLGQLKNLQYLELYSNNITGPVPSDLGNLTNLVSLDLYL 129

Query:   127 NNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGS 186
             N+ TGPIP SL +L  L+FLRLN N LTG IP  LT +  L++LD+SNN L G++P  GS
Sbjct:   130 NSFTGPIPDSLGKLFKLRFLRLNNNSLTGPIPMSLTNIMTLQVLDLSNNRLSGSVPDNGS 189

Query:   187 FSKFSEESFMNNPRLEGP 204
             FS F+  SF NN  L GP
Sbjct:   190 FSLFTPISFANNLDLCGP 207

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009556 "microsporogenesis" evidence=IGI;IMP

GO:0010152 "pollen maturation" evidence=IMP

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IMP

TAIR|locus:2040461 SERK4 "somatic embryogenesis receptor-like kinase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
 Identities = 116/204 (56%), Positives = 146/204 (71%)

Query:     5 RSGLFHLLVALVLSNTIATSNANVEGDALFALRRAVK--DP-QGVLQSWDPTLVDPCTWF 61
             RS L  L + L+ + T+  +  N EGDAL  L+ ++   DP   VLQSWD TLV PCTWF
Sbjct:     9 RSLLCFLYLLLLFNFTLRVAG-NAEGDALTQLKNSLSSGDPANNVLQSWDATLVTPCTWF 67

Query:    62 HVTCDADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLIS 121
             HVTC+ +N+VTR+DLGN KLSG LVPELG+L  LQYLELY NN+ G+IP+ELG L  L+S
Sbjct:    68 HVTCNPENKVTRVDLGNAKLSGKLVPELGQLLNLQYLELYSNNITGEIPEELGDLVELVS 127

Query:   122 LDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTI 181
             LDLY N+++GPIP SL +L  L+FLRLN N L+G+IP  LT +  L++LD+SNN L G I
Sbjct:   128 LDLYANSISGPIPSSLGKLGKLRFLRLNNNSLSGEIPMTLTSV-QLQVLDISNNRLSGDI 186

Query:   182 PTAGSFSKFSEESFMNNPRLEGPE 205
             P  GSFS F+  SF NN   + PE
Sbjct:   187 PVNGSFSLFTPISFANNSLTDLPE 210

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0060548 "negative regulation of cell death" evidence=IMP

GO:1900140 "regulation of seedling development" evidence=IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0008219 "cell death" evidence=IGI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IGI

GO:0010150 "leaf senescence" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

TAIR|locus:2040471 SERK5 "somatic embryogenesis receptor-like kinase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 101/180 (56%), Positives = 127/180 (70%)

Query:    31 DALFALRRAVKD---PQGVLQSWDPTLVDPCTWFHVTCDADNRVTRLDLGNGKLSGNLVP 87
             DAL ALR ++        +LQSW+ T V PC+WFHVTC+ +N VTRLDLG+  LSG LVP
Sbjct:    29 DALIALRSSLSSGDHTNNILQSWNATHVTPCSWFHVTCNTENSVTRLDLGSANLSGELVP 88

Query:    88 ELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLR 147
             +L +L  LQYLEL+ NN+ G+IP+ELG L  L+SLDL+ NN++GPIP SL +L  L+FLR
Sbjct:    89 QLAQLPNLQYLELFNNNITGEIPEELGDLMELVSLDLFANNISGPIPSSLGKLGKLRFLR 148

Query:   148 LNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNN---PRLEGP 204
             L  N L+G+IPR LT L  L +LD+SNN L G IP  GSFS+F+  SF NN   PR   P
Sbjct:   149 LYNNSLSGEIPRSLTALP-LDVLDISNNRLSGDIPVNGSFSQFTSMSFANNKLRPRPASP 207

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

TAIR|locus:2101064 AT3G43740 [Arabidopsis thaliana (taxid:3702)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 90/179 (50%), Positives = 111/179 (62%)

Query:    11 LLVALVLSNT-IATSNANVEGDALFALRRAVKDPQGVLQSWDPTLVDPCTWFHVTCDADN 69
             L  +L+L+   I  + AN EGDAL ALRR++ DP  V+QSWDPTLV+PCTWFHVTC+  +
Sbjct:    11 LAASLILTLALIRLTEANSEGDALHALRRSLSDPDNVVQSWDPTLVNPCTWFHVTCNQHH 70

Query:    70 RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISL------D 123
             +VTRLDLGN  LSG+LVPELGKLE LQYL   +  L     K      + I+       +
Sbjct:    71 QVTRLDLGNSNLSGHLVPELGKLEHLQYLYGIITLLPFDYLKTFTLSVTHITFCFESYSE 130

Query:   124 LYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIP 182
             LY N + G IP  L  L +L  L L  N LTGKIP  L KL +L  L ++ N L G IP
Sbjct:   131 LYKNEIQGTIPSELGNLKSLISLDLYNNNLTGKIPSSLGKLKSLVFLRLNENRLTGPIP 189

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2036636 NIK3 "NSP-interacting kinase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 73/167 (43%), Positives = 104/167 (62%)

Query:    16 VLSNTIATSNANVEGDALFALRRAVKDPQGVLQSWDPTLVDPCTWFHVTCDADNRVTRLD 75
             + S T++ +  N E  AL A++  + DP  VL++WD   VDPC+W  V+C  D  V+ LD
Sbjct:    22 ISSATLSPTGVNYEVTALVAVKNELNDPYKVLENWDVNSVDPCSWRMVSC-TDGYVSSLD 80

Query:    76 LGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPP 135
             L +  LSG L P +G L  LQ + L  N + G IP+ +G+L+ L SLDL +N+ TG IP 
Sbjct:    81 LPSQSLSGTLSPRIGNLTYLQSVVLQNNAITGPIPETIGRLEKLQSLDLSNNSFTGEIPA 140

Query:   136 SLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIP 182
             SL  L NL +LRLN N L G  P  L+K+  L ++D+S N+L G++P
Sbjct:   141 SLGELKNLNYLRLNNNSLIGTCPESLSKIEGLTLVDISYNNLSGSLP 187

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2118811 SARK "SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE" [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 8.8e-32, P = 8.8e-32
 Identities = 71/175 (40%), Positives = 106/175 (60%)

Query:     8 LFHLLVALVLSNTIATSNANVEGDALFALRRAVKDPQGVLQSWDPTLVDPCTWFHVTCDA 67
             L+  L     + T+++   N E +AL ++R  + DP G L +WD   VDPC+W  +TC  
Sbjct:    16 LYSFLFLCFSTLTLSSEPRNPEVEALISIRNNLHDPHGALNNWDEFSVDPCSWAMITCSP 75

Query:    68 DNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHN 127
             DN V  L   +  LSG L   +G L  L+ + L  NN++G+IP ELG L  L +LDL +N
Sbjct:    76 DNLVIGLGAPSQSLSGGLSESIGNLTNLRQVSLQNNNISGKIPPELGFLPKLQTLDLSNN 135

Query:   128 NLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIP 182
               +G IP S+ +LS+L++LRLN N L+G  P  L+++ +L  LD+S N+L G +P
Sbjct:   136 RFSGDIPVSIDQLSSLQYLRLNNNSLSGPFPASLSQIPHLSFLDLSYNNLSGPVP 190

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010150 "leaf senescence" evidence=IMP

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

TAIR|locus:2061466 AT2G23950 [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 1.3e-30, P = 1.3e-30
 Identities = 67/172 (38%), Positives = 108/172 (62%)

Query:    11 LLVALVLSNTIATSNANVEGDALFALRRAVKDPQGVLQSWDPTLVDPCTWFHVTCDADNR 70
             LL+   ++ ++++   N E +AL  ++  + DP GV ++WD   VDPC+W  ++C +DN 
Sbjct:    16 LLLCFFVTCSLSSEPRNPEVEALINIKNELHDPHGVFKNWDEFSVDPCSWTMISCSSDNL 75

Query:    71 VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLT 130
             V  L   +  LSG L   +G L  L+ + L  NN++G+IP E+  L  L +LDL +N  +
Sbjct:    76 VIGLGAPSQSLSGTLSGSIGNLTNLRQVSLQNNNISGKIPPEICSLPKLQTLDLSNNRFS 135

Query:   131 GPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIP 182
             G IP S+++LSNL++LRLN N L+G  P  L+++ +L  LD+S N+L G +P
Sbjct:   136 GEIPGSVNQLSNLQYLRLNNNSLSGPFPASLSQIPHLSFLDLSYNNLRGPVP 187

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2058759 FEI2 "FEI 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 3.4e-30, P = 3.4e-30
 Identities = 84/210 (40%), Positives = 112/210 (53%)

Query:     1 MAIC---RSGLFHLLVALVLSNTIATSNANVEGDALFALRRAVKDPQGVLQSWDPTLVDP 57
             M IC   R   + LL++ + + T      + +G+AL + R  V    GV+  W P   DP
Sbjct:     1 MGICLMKRCCSWFLLISFLSALTNENEAISPDGEALLSFRNGVLASDGVIGLWRPEDPDP 60

Query:    58 CTWFHVTCDADN-RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQL 116
             C W  VTCDA   RV  L L   KL G L PELGKL++L+ L L+ N L   IP  LG  
Sbjct:    61 CNWKGVTCDAKTKRVIALSLTYHKLRGPLPPELGKLDQLRLLMLHNNALYQSIPASLGNC 120

Query:   117 KSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNND 176
              +L  + L +N +TG IP  +  LS LK L L+ N L G IP  L +L  L   +VSNN 
Sbjct:   121 TALEGIYLQNNYITGTIPSEIGNLSGLKNLDLSNNNLNGAIPASLGQLKRLTKFNVSNNF 180

Query:   177 LCGTIPTAGSFSKFSEESFMNNPRLEGPEL 206
             L G IP+ G  ++ S +SF  N  L G ++
Sbjct:   181 LVGKIPSDGLLARLSRDSFNGNRNLCGKQI 210

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS;IDA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009664 "plant-type cell wall organization" evidence=RCA;IMP

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0000272 "polysaccharide catabolic process" evidence=RCA

GO:0005982 "starch metabolic process" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	218
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-28
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-25
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-25
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-24
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-22
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-21
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-20
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-20
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-19
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-17
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-17
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-13
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	8e-11
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  111 bits (278), Expect = 4e-28
 Identities = 54/109 (49%), Positives = 73/109 (66%)

Query: 74  LDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPI 133
           L L + +L G +  ELG+++ L+++ L  NNL+G+IP E+G L SL  LDL +NNLTGPI
Sbjct: 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPI 252

Query: 134 PPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIP 182
           P SL  L NL++L L  NKL+G IP  +  L  L  LD+S+N L G IP
Sbjct: 253 PSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  104 bits (260), Expect = 1e-25
 Identities = 61/196 (31%), Positives = 103/196 (52%), Gaps = 10/196 (5%)

Query: 24  SNANVEGDALFALRRAVKDPQGVLQSWDPTLVDPCTWFHVTCDADNRVTRLDLGNGKLSG 83
            +A  E + L + + ++ DP   L +W+ +  D C W  +TC+  +RV  +DL    +SG
Sbjct: 26  LHAE-ELELLLSFKSSINDPLKYLSNWNSS-ADVCLWQGITCNNSSRVVSIDLSGKNISG 83

Query: 84  NLVPELGKLERLQYLELYMNNLAGQIPKELGQL-KSLISLDLYHNNLTGPIPPSLSRLSN 142
            +   + +L  +Q + L  N L+G IP ++     SL  L+L +NN TG IP     + N
Sbjct: 84  KISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGS--IPN 141

Query: 143 LKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLE 202
           L+ L L+ N L+G+IP ++    +LK+LD+  N L G IP   S +  +   F+    L 
Sbjct: 142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP--NSLTNLTSLEFLT---LA 196

Query: 203 GPELMGFVRYDVGDCK 218
             +L+G +  ++G  K
Sbjct: 197 SNQLVGQIPRELGQMK 212

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  103 bits (257), Expect = 2e-25
 Identities = 51/109 (46%), Positives = 66/109 (60%)

Query: 74  LDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPI 133
           LDL    L+G +   LG L+ LQYL LY N L+G IP  +  L+ LISLDL  N+L+G I
Sbjct: 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300

Query: 134 PPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIP 182
           P  + +L NL+ L L  N  TGKIP  LT L  L++L + +N   G IP
Sbjct: 301 PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP 349

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =   99 bits (249), Expect = 3e-24
 Identities = 52/109 (47%), Positives = 68/109 (62%)

Query: 76  LGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPP 135
           LG   LSG +  E+G L  L +L+L  NNL G IP  LG LK+L  L LY N L+GPIPP
Sbjct: 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP 278

Query: 136 SLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTA 184
           S+  L  L  L L+ N L+G+IP  + +L NL+IL + +N+  G IP A
Sbjct: 279 SIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA 327

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 93.8 bits (233), Expect = 4e-22
 Identities = 53/135 (39%), Positives = 80/135 (59%)

Query: 69  NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNN 128
            R+  LDL   + SG +  +LG L  L  L+L  N L+G+IP EL   K L+SLDL HN 
Sbjct: 475 KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ 534

Query: 129 LTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFS 188
           L+G IP S S +  L  L L+ N+L+G+IP+ L  + +L  +++S+N L G++P+ G+F 
Sbjct: 535 LSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFL 594

Query: 189 KFSEESFMNNPRLEG 203
             +  +   N  L G
Sbjct: 595 AINASAVAGNIDLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 91.8 bits (228), Expect = 2e-21
 Identities = 51/109 (46%), Positives = 64/109 (58%)

Query: 74  LDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPI 133
           LDLG   L G +   L  L  L++L L  N L GQIP+ELGQ+KSL  + L +NNL+G I
Sbjct: 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228

Query: 134 PPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIP 182
           P  +  L++L  L L  N LTG IP  L  L NL+ L +  N L G IP
Sbjct: 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP 277

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 88.7 bits (220), Expect = 2e-20
 Identities = 51/139 (36%), Positives = 74/139 (53%), Gaps = 13/139 (9%)

Query: 56  DPCT-----WFHVTCDADNRVTR-----LDLGNGKLSGNLVPELGKLERLQYLELYMNNL 105
           DPC      W    C  D+   +     L L N  L G +  ++ KL  LQ + L  N++
Sbjct: 395 DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSI 454

Query: 106 AGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPREL-TKL 164
            G IP  LG + SL  LDL +N+  G IP SL +L++L+ L LNGN L+G++P  L  +L
Sbjct: 455 RGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRL 514

Query: 165 GNLKILDVSNN-DLCGTIP 182
            +    + ++N  LCG IP
Sbjct: 515 LHRASFNFTDNAGLCG-IP 532

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 86.8 bits (215), Expect = 9e-20
 Identities = 47/114 (41%), Positives = 66/114 (57%)

Query: 70  RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNL 129
           R+  L L + K SG +   LGK   L  L+L  NNL G+IP+ L    +L  L L+ N+L
Sbjct: 333 RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSL 392

Query: 130 TGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPT 183
            G IP SL    +L+ +RL  N  +G++P E TKL  +  LD+SNN+L G I +
Sbjct: 393 EGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINS 446

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 86.1 bits (213), Expect = 2e-19
 Identities = 51/132 (38%), Positives = 74/132 (56%), Gaps = 2/132 (1%)

Query: 74  LDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPI 133
           LDL N  LSG +  ++G    L+ L+L  N L G+IP  L  L SL  L L  N L G I
Sbjct: 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI 204

Query: 134 PPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTA-GSFSKFSE 192
           P  L ++ +LK++ L  N L+G+IP E+  L +L  LD+  N+L G IP++ G+     +
Sbjct: 205 PRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNL-Q 263

Query: 193 ESFMNNPRLEGP 204
             F+   +L GP
Sbjct: 264 YLFLYQNKLSGP 275

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 79.9 bits (197), Expect = 2e-17
 Identities = 43/110 (39%), Positives = 61/110 (55%), Gaps = 1/110 (0%)

Query: 74  LDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPI 133
           L L   K  G L P+    +RL+ L+L  N  +G +P++LG L  L+ L L  N L+G I
Sbjct: 457 LSLARNKFFGGL-PDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEI 515

Query: 134 PPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPT 183
           P  LS    L  L L+ N+L+G+IP   +++  L  LD+S N L G IP 
Sbjct: 516 PDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK 565

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 78.7 bits (194), Expect = 5e-17
 Identities = 48/110 (43%), Positives = 64/110 (58%), Gaps = 2/110 (1%)

Query: 74  LDLGNGKLSGNLVPEL-GKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGP 132
           LDL +  LSG  +PEL  +L+ L+ L L+ NN  G+IP  L  L  L  L L+ N  +G 
Sbjct: 289 LDLSDNSLSGE-IPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGE 347

Query: 133 IPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIP 182
           IP +L + +NL  L L+ N LTG+IP  L   GNL  L + +N L G IP
Sbjct: 348 IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP 397

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 68.7 bits (168), Expect = 1e-13
 Identities = 37/114 (32%), Positives = 61/114 (53%)

Query: 69  NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNN 128
           N +T LDL    L+G +   L     L  L L+ N+L G+IPK LG  +SL  + L  N+
Sbjct: 356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS 415

Query: 129 LTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIP 182
            +G +P   ++L  + FL ++ N L G+I      + +L++L ++ N   G +P
Sbjct: 416 FSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP 469

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 69.1 bits (169), Expect = 1e-13
 Identities = 39/108 (36%), Positives = 64/108 (59%), Gaps = 4/108 (3%)

Query: 100 LYMNN--LAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKI 157
           L ++N  L G IP ++ +L+ L S++L  N++ G IPPSL  +++L+ L L+ N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 158 PRELTKLGNLKILDVSNNDLCGTIPTA--GSFSKFSEESFMNNPRLEG 203
           P  L +L +L+IL+++ N L G +P A  G     +  +F +N  L G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530

Length = 623

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 55.0 bits (133), Expect = 8e-11
 Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 26 ANVEGDALFALRRAV-KDPQGVLQSWDPTLVDPCTWFHVTCD 66
           N + DAL A + ++  DP G L SW+P+  DPC+W  VTCD
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 51.9 bits (124), Expect = 6e-08
 Identities = 37/108 (34%), Positives = 59/108 (54%), Gaps = 4/108 (3%)

Query: 68  DNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHN 127
            + +  LDL + K+  +L   L  L  L+ L+L  N+L+  +PK L  L +L +LDL   
Sbjct: 139 KSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL-SG 195

Query: 128 NLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNN 175
           N    +PP +  LS L+ L L+ N +  ++   L+ L NL  L++SNN
Sbjct: 196 NKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNN 242

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.5 bits (101), Expect = 4e-06
 Identities = 28/61 (45%), Positives = 37/61 (60%), Gaps = 2/61 (3%)

Query: 118 SLISLDLYHNNLTGPIPP-SLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNND 176
           +L SLDL +N LT  IP  +   L NLK L L+GN LT   P   + L +L+ LD+S N+
Sbjct: 1   NLKSLDLSNNRLTV-IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 177 L 177
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 46.1 bits (109), Expect = 5e-06
 Identities = 47/135 (34%), Positives = 62/135 (45%), Gaps = 5/135 (3%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
             LDL    LS +L   L  L  L  L+L   N    +P E+  L +L  LDL  NN   
Sbjct: 166 KNLDLSFNDLS-DLPKLLSNLSNLNNLDL-SGNKISDLPPEIELLSALEELDLS-NNSII 222

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFS 191
            +  SLS L NL  L L+ NKL   +P  +  L NL+ LD+SNN +  +I + GS +   
Sbjct: 223 ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISSLGSLTNLR 280

Query: 192 EESFMNNPRLEGPEL 206
           E     N       L
Sbjct: 281 ELDLSGNSLSNALPL 295

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 94  RLQYLELYMNNLAGQIPKE-LGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNK 152
            L+ L+L  NN    IP      L +L  LDL  NNLT   P + S L +L+ L L+GN 
Sbjct: 1   NLKSLDL-SNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 153 L 153
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.001
 Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 70  RVTRLDLGNGKLSGNLVPE--LGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHN 127
            +  LDL N +L+   +P+     L  L+ L+L  NNL    P+    L SL SLDL  N
Sbjct: 1   NLKSLDLSNNRLTV--IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Query: 128 NL 129
           NL
Sbjct: 59  NL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 41/85 (48%), Positives = 52/85 (61%), Gaps = 4/85 (4%)

Query: 95  LQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRL-SNLKFLRLNGNKL 153
           L  L+L +N L   I  EL +L +L SLDL +NN+T  IPP +  L SNLK L L+ NK+
Sbjct: 95  LPSLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKI 152

Query: 154 TGKIPRELTKLGNLKILDVSNNDLC 178
              +P  L  L NLK LD+S NDL 
Sbjct: 153 E-SLPSPLRNLPNLKNLDLSFNDLS 176

Length = 394

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 34.0 bits (79), Expect = 0.003
 Identities = 19/38 (50%), Positives = 27/38 (71%), Gaps = 2/38 (5%)

Query: 117 KSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLT 154
            +L +LDL +N +T  +PP LS L NL+ L L+GNK+T
Sbjct: 1   TNLETLDLSNNQITD-LPP-LSNLPNLETLDLSGNKIT 36

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	218
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.93
PLN03150	623	hypothetical protein; Provisional	99.77
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.68
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.59
PLN03150	623	hypothetical protein; Provisional	99.5
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.45
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.38
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.35
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.31
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.31
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.3
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.27
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.25
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.24
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.23
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.19
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.12
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.1
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.06
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.04
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.03
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.02
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.02
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.01
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.0
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.96
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.93
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.88
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.88
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.77
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.76
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.73
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.73
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.69
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.62
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.54
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.51
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.4
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.37
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.33
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.31
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.24
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.23
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.19
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.18
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.17
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.08
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.04
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.95
PRK15386	426	type III secretion protein GogB; Provisional	97.76
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.67
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.63
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.53
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.53
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.25
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.24
PRK15386	426	type III secretion protein GogB; Provisional	97.23
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.15
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.02
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.85
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.75
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.75
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.65
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.38
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.21
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.95
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.68
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.57
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.29
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.69
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.92
smart00370	26	LRR Leucine-rich repeats, outliers.	90.92
KOG3864	221	consensus Uncharacterized conserved protein [Funct	88.32
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	87.19
KOG1947	482	consensus Leucine rich repeat proteins, some prote	86.86
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	84.82
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	81.86
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	81.74
KOG1947	482	consensus Leucine rich repeat proteins, some prote	81.02
KOG3864	221	consensus Uncharacterized conserved protein [Funct	80.65

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.93  E-value=8.5e-25  Score=200.53  Aligned_cols=170  Identities=32%  Similarity=0.606  Sum_probs=131.6

Q ss_pred             CchHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcceeEeCCCCCEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcC
Q 027850           26 ANVEGDALFALRRAVKDPQGVLQSWDPTLVDPCTWFHVTCDADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNL  105 (218)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~~~~l~~w~~~~~~~c~~~~v~c~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l  105 (218)
                      .+.|+.++++++..+.++...+.+|+.. .++|.|.||+|+..++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~-~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~  105 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWNSS-ADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL  105 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCCCC-CCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCcc
Confidence            4478899999999998777778999754 579999999998778999999999999999999999999999999999999


Q ss_pred             CCCCCcccc-cCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEccCCcCCCCCChhccCCCCCCEEEeeCCcccccCCCC
Q 027850          106 AGQIPKELG-QLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTA  184 (218)
Q Consensus       106 ~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~  184 (218)
                      .+.+|..+. .+++|++|++++|.+++.+|.  ..+++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..
T Consensus       106 ~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~  183 (968)
T PLN00113        106 SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS  183 (968)
T ss_pred             CCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh
Confidence            888886654 788888888888877765553  34566666666666666666666666666666666666666555544


Q ss_pred             -CCCCCCCcccccCC
Q 027850          185 -GSFSKFSEESFMNN  198 (218)
Q Consensus       185 -~~l~~L~~L~l~~N  198 (218)
                       +.+++|++|++++|
T Consensus       184 ~~~l~~L~~L~L~~n  198 (968)
T PLN00113        184 LTNLTSLEFLTLASN  198 (968)
T ss_pred             hhhCcCCCeeeccCC
Confidence             55666666666665

>PLN03150 hypothetical protein; Provisional

Probab=99.77  E-value=8.9e-18  Score=147.00  Aligned_cols=153  Identities=35%  Similarity=0.554  Sum_probs=127.5

Q ss_pred             CchHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC-----CcceeEeCCC-----CCEEEEEcCCCCCccccCcccCCCCCC
Q 027850           26 ANVEGDALFALRRAVKDPQGVLQSWDPTLVDPC-----TWFHVTCDAD-----NRVTRLDLGNGKLSGNLVPELGKLERL   95 (218)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~~~~l~~w~~~~~~~c-----~~~~v~c~~~-----~~l~~L~l~~~~l~~~~~~~~~~l~~L   95 (218)
                      ...|..+|..+|..+..+..  .+|..   ++|     .|.||.|...     ..++.|+|++|.+.+.+|..+..+++|
T Consensus       370 ~~~~~~aL~~~k~~~~~~~~--~~W~g---~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L  444 (623)
T PLN03150        370 LLEEVSALQTLKSSLGLPLR--FGWNG---DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHL  444 (623)
T ss_pred             CchHHHHHHHHHHhcCCccc--CCCCC---CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCC
Confidence            44688999999998865432  47863   345     7999999532     248999999999999999999999999


Q ss_pred             CEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEccCCcCCCCCChhccCC-CCCCEEEeeC
Q 027850           96 QYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKL-GNLKILDVSN  174 (218)
Q Consensus        96 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l-~~L~~L~l~~  174 (218)
                      +.|+|++|.+.+.+|..+..+++|+.|++++|.+++.+|+.++.+++|++|++++|++++.+|..+... .++..+++.+
T Consensus       445 ~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~  524 (623)
T PLN03150        445 QSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTD  524 (623)
T ss_pred             CEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecC
Confidence            999999999999999999999999999999999999999999999999999999999999999887653 4677888888


Q ss_pred             CcccccCCC
Q 027850          175 NDLCGTIPT  183 (218)
Q Consensus       175 N~l~~~~~~  183 (218)
                      |...+..|.
T Consensus       525 N~~lc~~p~  533 (623)
T PLN03150        525 NAGLCGIPG  533 (623)
T ss_pred             CccccCCCC
Confidence            865444443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.70  E-value=6.9e-17  Score=148.57  Aligned_cols=136  Identities=39%  Similarity=0.659  Sum_probs=89.6

Q ss_pred             CEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEcc
Q 027850           70 RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLN  149 (218)
Q Consensus        70 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  149 (218)
                      +++.|++++|++.+..|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|+++
T Consensus       476 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  555 (968)
T PLN00113        476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS  555 (968)
T ss_pred             cceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECC
Confidence            45666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CCcCCCCCChhccCCCCCCEEEeeCCcccccCCCCCCCCCCCcccccCCCCCCCCC
Q 027850          150 GNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLEGPE  205 (218)
Q Consensus       150 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~L~~L~l~~N~~l~~~~  205 (218)
                      +|++++.+|..+..+++|+++++++|.+.+.+|..+.+..+....+.+|+.+|+.+
T Consensus       556 ~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        556 QNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             CCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            66666666666666666666666666666666665555556666666666666543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.68  E-value=2.8e-19  Score=128.46  Aligned_cols=128  Identities=26%  Similarity=0.433  Sum_probs=97.6

Q ss_pred             CCCEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEE
Q 027850           68 DNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLR  147 (218)
Q Consensus        68 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  147 (218)
                      ..++++|.+++|+++ ..|+.+..+.+|+.|++.+|++. .+|..++.+++|+.|+++.|++. ..|..|+.++.|+.||
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld  108 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD  108 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence            457889999999988 66777888999999999999998 78888999999999999999988 7889999999999999


Q ss_pred             ccCCcCC-CCCChhccCCCCCCEEEeeCCcccccCCCCCCCCCCCcccccCC
Q 027850          148 LNGNKLT-GKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNN  198 (218)
Q Consensus       148 l~~n~l~-~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~L~~L~l~~N  198 (218)
                      +.+|++. ..+|..|..+..|+.|++++|.+.-.+|..+.+++|+.|.+..|
T Consensus       109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn  160 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN  160 (264)
T ss_pred             ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC
Confidence            9888775 24555555555555555555555544444455555555555555

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.59  E-value=1.2e-17  Score=120.04  Aligned_cols=128  Identities=29%  Similarity=0.489  Sum_probs=116.8

Q ss_pred             CCEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCC-CCcccCCCCCCCCEEE
Q 027850           69 NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG-PIPPSLSRLSNLKFLR  147 (218)
Q Consensus        69 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~  147 (218)
                      .+++.|++.+|++. .+|.+++.++.|+.|+++-|++. ..|..|+.++.|+.||+.+|++.. .+|..|..+..|+.|+
T Consensus        56 ~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlraly  133 (264)
T KOG0617|consen   56 KNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALY  133 (264)
T ss_pred             hhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHH
Confidence            47889999999998 78999999999999999999999 899999999999999999999863 4788888999999999


Q ss_pred             ccCCcCCCCCChhccCCCCCCEEEeeCCcccccCCCCCCCCCCCcccccCCC
Q 027850          148 LNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNP  199 (218)
Q Consensus       148 l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~L~~L~l~~N~  199 (218)
                      ++.|.+. .+|..++++++|+.|.+..|.+-..+-+.+.++.|++|.+.+|.
T Consensus       134 l~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  134 LGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             hcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccce
Confidence            9999998 88999999999999999999988666667999999999999993

>PLN03150 hypothetical protein; Provisional

Probab=99.50  E-value=5.7e-14  Score=123.21  Aligned_cols=112  Identities=35%  Similarity=0.590  Sum_probs=103.0

Q ss_pred             CCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEccCCcCCCCCChhccCCCCCCEEEee
Q 027850           94 RLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVS  173 (218)
Q Consensus        94 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  173 (218)
                      .++.|+|++|.+.+.+|..+..+++|+.|++++|.+.|.+|..+..+++|+.|++++|++++.+|..+..+++|++|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccCCCC-CC-CCCCCcccccCCCCCCCCC
Q 027850          174 NNDLCGTIPTA-GS-FSKFSEESFMNNPRLEGPE  205 (218)
Q Consensus       174 ~N~l~~~~~~~-~~-l~~L~~L~l~~N~~l~~~~  205 (218)
                      +|.++|.+|.. .. ..++..+++.+|+.+|+.+
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            99999999876 33 3567789999998888754

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.45  E-value=5.7e-15  Score=123.65  Aligned_cols=130  Identities=24%  Similarity=0.222  Sum_probs=70.0

Q ss_pred             CEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCC---------
Q 027850           70 RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRL---------  140 (218)
Q Consensus        70 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l---------  140 (218)
                      +++.|+|+.|++...-...+.+++.|+.|++++|.|....++.+...++|+.|++++|+++...+..|..+         
T Consensus       270 kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs  349 (873)
T KOG4194|consen  270 KMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLS  349 (873)
T ss_pred             ccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccc
Confidence            45555666665554444455555566666666666555555555555566666666665554333444444         


Q ss_pred             ---------------CCCCEEEccCCcCCCCCC---hhccCCCCCCEEEeeCCcccccCCCC-CCCCCCCcccccCCC
Q 027850          141 ---------------SNLKFLRLNGNKLTGKIP---RELTKLGNLKILDVSNNDLCGTIPTA-GSFSKFSEESFMNNP  199 (218)
Q Consensus       141 ---------------~~L~~L~l~~n~l~~~~p---~~~~~l~~L~~L~l~~N~l~~~~~~~-~~l~~L~~L~l~~N~  199 (218)
                                     ++|++||+++|.+.+.+.   ..|..+++|+.|++.+|++....... ..+++|++|++.+|+
T Consensus       350 ~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Na  427 (873)
T KOG4194|consen  350 HNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNA  427 (873)
T ss_pred             ccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCc
Confidence                           445555555554443222   23445566666666666665333322 556666666666664

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.38  E-value=5.8e-14  Score=117.69  Aligned_cols=110  Identities=24%  Similarity=0.191  Sum_probs=57.9

Q ss_pred             cCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEccCCcCCCCCChhccCCCCCC
Q 027850           89 LGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLK  168 (218)
Q Consensus        89 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~  168 (218)
                      |.++++|+.|.+..|.|.......|..+.++++|+++.|+++..-..++.++..|+.|++++|.|....++.|...++|+
T Consensus       241 FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~  320 (873)
T KOG4194|consen  241 FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLK  320 (873)
T ss_pred             hcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccce
Confidence            34444444444444444433344455555555566666655533334555555666666666666555555555556666


Q ss_pred             EEEeeCCcccccCCCC-CCCCCCCcccccCC
Q 027850          169 ILDVSNNDLCGTIPTA-GSFSKFSEESFMNN  198 (218)
Q Consensus       169 ~L~l~~N~l~~~~~~~-~~l~~L~~L~l~~N  198 (218)
                      +|+|++|+++...+.. ..+..|++|.+++|
T Consensus       321 ~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N  351 (873)
T KOG4194|consen  321 ELDLSSNRITRLDEGSFRVLSQLEELNLSHN  351 (873)
T ss_pred             eEeccccccccCChhHHHHHHHhhhhccccc
Confidence            6666666665544433 34444455555544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.35  E-value=3.2e-14  Score=114.52  Aligned_cols=128  Identities=30%  Similarity=0.481  Sum_probs=103.2

Q ss_pred             EEEEEcCCCCCc-----------------------cccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCC
Q 027850           71 VTRLDLGNGKLS-----------------------GNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHN  127 (218)
Q Consensus        71 l~~L~l~~~~l~-----------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n  127 (218)
                      |+.++++.|++.                       +-.|..++.+++|..|++++|.+. .+|..+..+-.||.++++.|
T Consensus       390 Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~N  468 (565)
T KOG0472|consen  390 VTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFN  468 (565)
T ss_pred             eEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheeccccc
Confidence            778888887764                       122334566778888888888777 77877888888888888888


Q ss_pred             cCCCCCcccCCCCCCCCEEEccCCcCCCCCChhccCCCCCCEEEeeCCcccccCCCCCCCCCCCcccccCCCC
Q 027850          128 NLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPR  200 (218)
Q Consensus       128 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~L~~L~l~~N~~  200 (218)
                      ++. .+|..+..+..++++-.++|++....|+.+..+.+|.+||+.+|.+...+|..+++++|++|.+.|||+
T Consensus       469 rFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpf  540 (565)
T KOG0472|consen  469 RFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPF  540 (565)
T ss_pred             ccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCcc
Confidence            887 778777777777777777788875666669999999999999999998888889999999999999964

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.31  E-value=5.8e-14  Score=113.01  Aligned_cols=123  Identities=33%  Similarity=0.473  Sum_probs=81.5

Q ss_pred             EEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccC-CCCCCCCEEEcc
Q 027850           71 VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSL-SRLSNLKFLRLN  149 (218)
Q Consensus        71 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~l~  149 (218)
                      +++||.-.|-+. .+|+.++.+.+|..|++..|++. .+| .|.++..|..++++.|.++ .+|... ++++++..||+.
T Consensus       185 L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLR  260 (565)
T KOG0472|consen  185 LKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLR  260 (565)
T ss_pred             HHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecc
Confidence            344444444333 45555666666666666666666 555 4666666666666666666 444433 367777777888


Q ss_pred             CCcCCCCCChhccCCCCCCEEEeeCCcccccCCCCCCCCCCCcccccCCC
Q 027850          150 GNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNP  199 (218)
Q Consensus       150 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~L~~L~l~~N~  199 (218)
                      .|+++ ++|+.+..+++|.+||+++|.+++.+++.+++ .|+.|.+.|||
T Consensus       261 dNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  261 DNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             ccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence            88877 77777777777888888888887777666777 77777777776

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.31  E-value=1.8e-13  Score=115.93  Aligned_cols=65  Identities=34%  Similarity=0.479  Sum_probs=39.8

Q ss_pred             CcccCCCCCCCCEEEccCCcCCCCCChhccCCCCCCEEEeeCCcccccCCCCCCCCCCCcccccCC
Q 027850          133 IPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNN  198 (218)
Q Consensus       133 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~L~~L~l~~N  198 (218)
                      +|.++-.+.+|..+|++.|.+. .+|+.+.++++|+.|+|++|+|+..-...+.+.+|+.|+++.|
T Consensus       214 ~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrN  278 (1255)
T KOG0444|consen  214 IPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRN  278 (1255)
T ss_pred             CCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccc
Confidence            3444445555566666666665 5666666777777777777776654433355556666666666

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.30  E-value=8.9e-14  Score=121.61  Aligned_cols=127  Identities=33%  Similarity=0.492  Sum_probs=111.9

Q ss_pred             CEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCC-cccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEc
Q 027850           70 RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIP-KELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRL  148 (218)
Q Consensus        70 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  148 (218)
                      .++.|.+.+|.+++...+.+.++.+|+.|+|++|++. .+| ..+.++..|+.|++++|+++ .+|+.+..++.|++|..
T Consensus       360 ~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~a  437 (1081)
T KOG0618|consen  360 ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRA  437 (1081)
T ss_pred             HHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhh
Confidence            5788899999999998899999999999999999999 555 55778999999999999999 88999999999999999


Q ss_pred             cCCcCCCCCChhccCCCCCCEEEeeCCcccccC-CCCCCCCCCCcccccCCCC
Q 027850          149 NGNKLTGKIPRELTKLGNLKILDVSNNDLCGTI-PTAGSFSKFSEESFMNNPR  200 (218)
Q Consensus       149 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~-~~~~~l~~L~~L~l~~N~~  200 (218)
                      .+|++. .+| .+..++.|+.+|++.|+++... +.....++|++|+++||++
T Consensus       438 hsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  438 HSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             cCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence            999998 777 7999999999999999998664 3333338999999999964

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.27  E-value=2.8e-13  Score=108.75  Aligned_cols=142  Identities=24%  Similarity=0.278  Sum_probs=123.2

Q ss_pred             CCCCEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccC-CcCCCCCcccCCCCCCCCE
Q 027850           67 ADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYH-NNLTGPIPPSLSRLSNLKF  145 (218)
Q Consensus        67 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~  145 (218)
                      .+...+.|+|..|+|+...+..|..+++|+.|||++|.|+.+-|++|.+++++..|.+.+ |+|+......|.++..++.
T Consensus        65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr  144 (498)
T KOG4237|consen   65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR  144 (498)
T ss_pred             CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence            356789999999999988888999999999999999999988999999999988887666 9999555568999999999


Q ss_pred             EEccCCcCCCCCChhccCCCCCCEEEeeCCcccccCCCC-CCCCCCCcccccCCCCCCCCCccC
Q 027850          146 LRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTA-GSFSKFSEESFMNNPRLEGPELMG  208 (218)
Q Consensus       146 L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~-~~l~~L~~L~l~~N~~l~~~~~~~  208 (218)
                      |.+.-|++.-...+.|..+++|..|.+-+|.+....... ..+.+++.+.+..||..+.+.+-+
T Consensus       145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~w  208 (498)
T KOG4237|consen  145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPW  208 (498)
T ss_pred             HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccch
Confidence            999999998777888999999999999999988554433 778899999999999888776543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.25  E-value=1.4e-13  Score=116.56  Aligned_cols=133  Identities=26%  Similarity=0.340  Sum_probs=82.4

Q ss_pred             CEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCC----------------------CCCcccccCCCCCEEEccCC
Q 027850           70 RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAG----------------------QIPKELGQLKSLISLDLYHN  127 (218)
Q Consensus        70 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~p~~~~~l~~L~~L~l~~n  127 (218)
                      ++..+|++.|.+. ..|+.+.++++|+.|+|++|.|+.                      .+|+.++.++.|+.|.+.+|
T Consensus       223 NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~N  301 (1255)
T KOG0444|consen  223 NLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNN  301 (1255)
T ss_pred             hhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccC
Confidence            4555555555555 445555555555555555555441                      45556666666666666666


Q ss_pred             cCCC-CCcccCCCCCCCCEEEccCCcCCCCCChhccCCCCCCEEEeeCCcccccCCCCCCCCCCCcccccCCCCCCCC
Q 027850          128 NLTG-PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLEGP  204 (218)
Q Consensus       128 ~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~L~~L~l~~N~~l~~~  204 (218)
                      ++.. .+|..++.+..|+.+..++|.+. .+|+.+..+..|+.|.|+.|.+-..+..+.-++.|+.|++..||.+--+
T Consensus       302 kL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMP  378 (1255)
T KOG0444|consen  302 KLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMP  378 (1255)
T ss_pred             cccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCC
Confidence            5542 25666666666666666666666 6677777777777777777777644444466777788888887766544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.24  E-value=4.4e-12  Score=93.47  Aligned_cols=121  Identities=26%  Similarity=0.409  Sum_probs=49.3

Q ss_pred             CEEEEEcCCCCCccccCcccC-CCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccC-CCCCCCCEEE
Q 027850           70 RVTRLDLGNGKLSGNLVPELG-KLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSL-SRLSNLKFLR  147 (218)
Q Consensus        70 ~l~~L~l~~~~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~  147 (218)
                      ++++|+|.+|.|+..  +.+. .+.+|+.|++++|.|. .++ .+..++.|+.|++++|+++ .+.+.+ ..+++|++|+
T Consensus        20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred             ccccccccccccccc--cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence            578899999988742  2344 5788999999999998 444 4778899999999999998 444434 3578999999


Q ss_pred             ccCCcCCCC-CChhccCCCCCCEEEeeCCcccccCCCC-----CCCCCCCccccc
Q 027850          148 LNGNKLTGK-IPRELTKLGNLKILDVSNNDLCGTIPTA-----GSFSKFSEESFM  196 (218)
Q Consensus       148 l~~n~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~~~~-----~~l~~L~~L~l~  196 (218)
                      +++|++... .-..+..+++|++|++.+|.++.. +..     ..+++|+.||..
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence            999998732 224577889999999999988754 321     567888887743

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.23  E-value=6.5e-12  Score=92.57  Aligned_cols=108  Identities=32%  Similarity=0.418  Sum_probs=41.2

Q ss_pred             cCCCCCCCEEEccCCcCCCCCCcccc-cCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEccCCcCCCCCChhc-cCCCC
Q 027850           89 LGKLERLQYLELYMNNLAGQIPKELG-QLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPREL-TKLGN  166 (218)
Q Consensus        89 ~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~  166 (218)
                      +.+...+++|+|.+|.|+ .+. .+. .+.+|+.|++++|.++. + +.+..+++|++|++++|+++ .+.+.+ ..+++
T Consensus        15 ~~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~   89 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPN   89 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred             cccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCC-ccccchHHhCCc
Confidence            445567899999999999 443 355 57899999999999994 4 45888999999999999999 455444 46899


Q ss_pred             CCEEEeeCCcccccCC--CCCCCCCCCcccccCCCCC
Q 027850          167 LKILDVSNNDLCGTIP--TAGSFSKFSEESFMNNPRL  201 (218)
Q Consensus       167 L~~L~l~~N~l~~~~~--~~~~l~~L~~L~l~~N~~l  201 (218)
                      |++|++++|+|...-.  ....+++|+.|++.+||.-
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            9999999999986432  2277899999999999854

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.19  E-value=1.7e-12  Score=101.38  Aligned_cols=125  Identities=27%  Similarity=0.308  Sum_probs=103.2

Q ss_pred             CEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEcc
Q 027850           70 RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLN  149 (218)
Q Consensus        70 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  149 (218)
                      .++.+||++|.|+ .+.++..-.|.++.|++++|.+. .+. .+..+++|+.||+++|.++ .+-.+--.+.++++|.++
T Consensus       285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence            4678999999988 67788888899999999999998 443 3788999999999999988 555555677889999999


Q ss_pred             CCcCCCCCChhccCCCCCCEEEeeCCcccccC--CCCCCCCCCCcccccCCCC
Q 027850          150 GNKLTGKIPRELTKLGNLKILDVSNNDLCGTI--PTAGSFSKFSEESFMNNPR  200 (218)
Q Consensus       150 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~--~~~~~l~~L~~L~l~~N~~  200 (218)
                      +|.+. . -..+.++.+|.+||+++|+|...-  -.+++++.|+++.+.+||.
T Consensus       361 ~N~iE-~-LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  361 QNKIE-T-LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             hhhHh-h-hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence            99986 2 235788899999999999988543  3348999999999999974

>PLN03210 Resistant to P

Probab=99.12  E-value=4.4e-10  Score=105.24  Aligned_cols=130  Identities=24%  Similarity=0.279  Sum_probs=106.9

Q ss_pred             CCEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEc
Q 027850           69 NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRL  148 (218)
Q Consensus        69 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  148 (218)
                      .+++.|++++|...+.+|..+.++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|..   ..+|++|++
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~L  853 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNL  853 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeEC
Confidence            478899999998777889999999999999999986555777665 7899999999997654455543   368999999


Q ss_pred             cCCcCCCCCChhccCCCCCCEEEeeC-CcccccCCCCCCCCCCCcccccCCCCCCC
Q 027850          149 NGNKLTGKIPRELTKLGNLKILDVSN-NDLCGTIPTAGSFSKFSEESFMNNPRLEG  203 (218)
Q Consensus       149 ~~n~l~~~~p~~~~~l~~L~~L~l~~-N~l~~~~~~~~~l~~L~~L~l~~N~~l~~  203 (218)
                      ++|.++ .+|..+..+++|++|++++ +++.+.++....+++|+.+++++|+.+..
T Consensus       854 s~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~  908 (1153)
T PLN03210        854 SRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE  908 (1153)
T ss_pred             CCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence            999998 7899999999999999998 56665544457889999999999876654

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.10  E-value=3.3e-10  Score=100.86  Aligned_cols=123  Identities=26%  Similarity=0.353  Sum_probs=78.9

Q ss_pred             eeEeCCCCCEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCC
Q 027850           62 HVTCDADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLS  141 (218)
Q Consensus        62 ~v~c~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~  141 (218)
                      .++...+.+++.|++++|+++ .+|..+.  .+|+.|++++|.++ .+|..+.  .+|+.|++++|.+. .+|..+.  .
T Consensus       192 sLP~~Ip~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s  262 (754)
T PRK15370        192 TIPACIPEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--S  262 (754)
T ss_pred             cCCcccccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--C
Confidence            334333457888888888888 4555443  57888888888887 5665443  46788888888777 5665543  4


Q ss_pred             CCCEEEccCCcCCCCCChhccCCCCCCEEEeeCCcccccCCCCCCCCCCCcccccCC
Q 027850          142 NLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNN  198 (218)
Q Consensus       142 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~L~~L~l~~N  198 (218)
                      +|++|++++|+++ .+|..+.  ++|++|++++|++++.+....  ++|+.|++++|
T Consensus       263 ~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N  314 (754)
T PRK15370        263 ALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSN  314 (754)
T ss_pred             CCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCC
Confidence            6778888887777 4565443  467777777777775432211  23444444444

>PLN03210 Resistant to P

Probab=99.06  E-value=1.5e-09  Score=101.75  Aligned_cols=126  Identities=21%  Similarity=0.252  Sum_probs=70.7

Q ss_pred             CEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEcc
Q 027850           70 RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLN  149 (218)
Q Consensus        70 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  149 (218)
                      +++.|++.++.+. .+|..+ ...+|+.|++.+|.+. .++..+..+++|+.++++++.....+|. +..+++|++|+++
T Consensus       590 ~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~  665 (1153)
T PLN03210        590 KLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLS  665 (1153)
T ss_pred             ccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEec
Confidence            3555555555544 344444 3456666666666665 4555555666666666666543334443 5556666666666


Q ss_pred             CCcCCCCCChhccCCCCCCEEEeeCCcccccCCCCCCCCCCCcccccCCC
Q 027850          150 GNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNP  199 (218)
Q Consensus       150 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~L~~L~l~~N~  199 (218)
                      +|.....+|..+..+++|+.|++++|...+.+|....+++|+.|++++|.
T Consensus       666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCS  715 (1153)
T ss_pred             CCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCC
Confidence            66544456666666666666666665433344433345556666665553

syringae 6; Provisional

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.04  E-value=1.1e-10  Score=71.23  Aligned_cols=58  Identities=48%  Similarity=0.618  Sum_probs=24.4

Q ss_pred             CCEEEccCCcCCCCCcccCCCCCCCCEEEccCCcCCCCCChhccCCCCCCEEEeeCCc
Q 027850          119 LISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNND  176 (218)
Q Consensus       119 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~  176 (218)
                      |++|++++|+++...+..|..+++|++|++++|.++...+..|..+++|++|++++|+
T Consensus         3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            3444444444442222334444444444444444443333344444444444444443

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.03  E-value=1.8e-10  Score=70.28  Aligned_cols=59  Identities=39%  Similarity=0.568  Sum_probs=30.7

Q ss_pred             CCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEccCCc
Q 027850           94 RLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNK  152 (218)
Q Consensus        94 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~  152 (218)
                      +|++|++++|.+....+..|..+++|++|++++|.++...+..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            44555555555553333445555555555555555553334455555555555555554

...

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.02  E-value=1.1e-11  Score=108.86  Aligned_cols=138  Identities=29%  Similarity=0.374  Sum_probs=110.4

Q ss_pred             CCEEEEEcCCCCCccccCccc--------------------------CCCCCCCEEEccCCcCCCCCCcccccCCCCCEE
Q 027850           69 NRVTRLDLGNGKLSGNLVPEL--------------------------GKLERLQYLELYMNNLAGQIPKELGQLKSLISL  122 (218)
Q Consensus        69 ~~l~~L~l~~~~l~~~~~~~~--------------------------~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  122 (218)
                      ..++.|+|..|++. .+|+.+                          ..++.|+.|.+.+|.++...=+.+.++++|+.|
T Consensus       310 ~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVL  388 (1081)
T KOG0618|consen  310 KSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVL  388 (1081)
T ss_pred             ceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeee
Confidence            46899999999886 333221                          123456777888998887665568899999999


Q ss_pred             EccCCcCCCCCc-ccCCCCCCCCEEEccCCcCCCCCChhccCCCCCCEEEeeCCcccccCCCCCCCCCCCcccccCCCCC
Q 027850          123 DLYHNNLTGPIP-PSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRL  201 (218)
Q Consensus       123 ~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~L~~L~l~~N~~l  201 (218)
                      ++++|++. .+| ..+.++..|++|++++|+++ .+|..+..++.|++|...+|++..+ |+...++.|+.+|++.| .+
T Consensus       389 hLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~f-Pe~~~l~qL~~lDlS~N-~L  464 (1081)
T KOG0618|consen  389 HLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSF-PELAQLPQLKVLDLSCN-NL  464 (1081)
T ss_pred             eecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeec-hhhhhcCcceEEecccc-hh
Confidence            99999999 566 46788999999999999999 8899999999999999999999854 58889999999999999 55


Q ss_pred             CCCCccCccc
Q 027850          202 EGPELMGFVR  211 (218)
Q Consensus       202 ~~~~~~~~~~  211 (218)
                      +-..+....|
T Consensus       465 ~~~~l~~~~p  474 (1081)
T KOG0618|consen  465 SEVTLPEALP  474 (1081)
T ss_pred             hhhhhhhhCC
Confidence            5444444444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.02  E-value=4.9e-10  Score=99.75  Aligned_cols=77  Identities=27%  Similarity=0.567  Sum_probs=37.9

Q ss_pred             CCEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEc
Q 027850           69 NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRL  148 (218)
Q Consensus        69 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  148 (218)
                      .+++.|++++|+++ .+|..+.  .+|+.|++++|.+. .+|..+.  .+|+.|++++|+++ .+|..+.  ++|++|++
T Consensus       220 ~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~L  290 (754)
T PRK15370        220 GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSV  290 (754)
T ss_pred             cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEEC
Confidence            46777777777766 3444332  34555555555555 3443332  34555555555544 3343332  24444444


Q ss_pred             cCCcCC
Q 027850          149 NGNKLT  154 (218)
Q Consensus       149 ~~n~l~  154 (218)
                      ++|+++
T Consensus       291 s~N~Lt  296 (754)
T PRK15370        291 YDNSIR  296 (754)
T ss_pred             CCCccc
Confidence            444444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.01  E-value=8.2e-10  Score=98.21  Aligned_cols=34  Identities=24%  Similarity=0.176  Sum_probs=19.4

Q ss_pred             CCCEEEeeCCcccccCCCCCCCCCCCcccccCCC
Q 027850          166 NLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNP  199 (218)
Q Consensus       166 ~L~~L~l~~N~l~~~~~~~~~l~~L~~L~l~~N~  199 (218)
                      +|+.|++++|+++..+.....+++|+.+++++|+
T Consensus       423 ~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        423 GLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             hhhhhhhccCcccccChHHhhccCCCeEECCCCC
Confidence            3445555555555322223567777778888774

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.00  E-value=5.6e-11  Score=96.20  Aligned_cols=37  Identities=35%  Similarity=0.372  Sum_probs=16.3

Q ss_pred             CEEEEEcCCCCCccccCcccCCCCC---CCEEEccCCcCC
Q 027850           70 RVTRLDLGNGKLSGNLVPELGKLER---LQYLELYMNNLA  106 (218)
Q Consensus        70 ~l~~L~l~~~~l~~~~~~~~~~l~~---L~~L~l~~n~l~  106 (218)
                      +++.|++++|.+.+..+..+..+..   |+.|++++|.+.
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~  121 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG  121 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccc
Confidence            4555555555544332322222222   555555555444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.96  E-value=1.2e-10  Score=94.32  Aligned_cols=108  Identities=31%  Similarity=0.450  Sum_probs=44.7

Q ss_pred             EEEEEcCCCCCcc----ccCcccCCC-CCCCEEEccCCcCCCC----CCcccccCCCCCEEEccCCcCCCC----CcccC
Q 027850           71 VTRLDLGNGKLSG----NLVPELGKL-ERLQYLELYMNNLAGQ----IPKELGQLKSLISLDLYHNNLTGP----IPPSL  137 (218)
Q Consensus        71 l~~L~l~~~~l~~----~~~~~~~~l-~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~  137 (218)
                      ++.|++++|++.+    .+...+..+ ++|+.|++++|.+++.    ++..+..+++|++|++++|.+++.    ++..+
T Consensus       110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l  189 (319)
T cd00116         110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGL  189 (319)
T ss_pred             ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHH
Confidence            5555555555441    111223333 4555555555554421    112233344455555555544421    11222


Q ss_pred             CCCCCCCEEEccCCcCCCC----CChhccCCCCCCEEEeeCCccc
Q 027850          138 SRLSNLKFLRLNGNKLTGK----IPRELTKLGNLKILDVSNNDLC  178 (218)
Q Consensus       138 ~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~  178 (218)
                      ..+++|++|++++|.+++.    +...+..+++|++|++++|.++
T Consensus       190 ~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         190 KANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence            3334455555555544321    1122333444555555544444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.93  E-value=7.8e-11  Score=98.87  Aligned_cols=125  Identities=32%  Similarity=0.440  Sum_probs=93.7

Q ss_pred             CEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEcc
Q 027850           70 RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLN  149 (218)
Q Consensus        70 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  149 (218)
                      .++.+|++.|++. .+|..++.++ |+.|-+++|+++ .+|..++.+.+|..||.+.|.+. .+|..++.+.+|+.|.+.
T Consensus       122 ~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vr  197 (722)
T KOG0532|consen  122 ALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVR  197 (722)
T ss_pred             HHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHh
Confidence            4566788888777 5566565554 778888888887 77777777788888888888887 677777788888888888


Q ss_pred             CCcCCCCCChhccCCCCCCEEEeeCCcccccCCCCCCCCCCCcccccCCCC
Q 027850          150 GNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPR  200 (218)
Q Consensus       150 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~L~~L~l~~N~~  200 (218)
                      .|++. .+|+.+..+ .|..||++.|+++..+-.+..|+.|++|-+.+||.
T Consensus       198 Rn~l~-~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPL  246 (722)
T KOG0532|consen  198 RNHLE-DLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPL  246 (722)
T ss_pred             hhhhh-hCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCC
Confidence            88877 666666644 47778888888885555557788888888888863

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.88  E-value=1e-08  Score=91.39  Aligned_cols=111  Identities=30%  Similarity=0.347  Sum_probs=75.1

Q ss_pred             CCEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEc
Q 027850           69 NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRL  148 (218)
Q Consensus        69 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  148 (218)
                      .+++.|++.+|+++. +|.   ..++|++|++++|.++ .+|..   .++|+.|++++|.++ .+|...   .+|+.|++
T Consensus       222 ~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~lp---~~L~~L~L  289 (788)
T PRK15387        222 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPALP---SGLCKLWI  289 (788)
T ss_pred             cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhch---hhcCEEEC
Confidence            467888888888773 443   2477888888888888 45542   357788888888877 455432   46778888


Q ss_pred             cCCcCCCCCChhccCCCCCCEEEeeCCcccccCCCCCCCCCCCcccccCC
Q 027850          149 NGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNN  198 (218)
Q Consensus       149 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~L~~L~l~~N  198 (218)
                      ++|+++ .+|.   ..++|+.|++++|++++.+. .  ..+|+.|++++|
T Consensus       290 s~N~Lt-~LP~---~p~~L~~LdLS~N~L~~Lp~-l--p~~L~~L~Ls~N  332 (788)
T PRK15387        290 FGNQLT-SLPV---LPPGLQELSVSDNQLASLPA-L--PSELCKLWAYNN  332 (788)
T ss_pred             cCCccc-cccc---cccccceeECCCCccccCCC-C--cccccccccccC
Confidence            888887 4554   24678999999998886432 1  123444555554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.88  E-value=2.7e-11  Score=101.51  Aligned_cols=119  Identities=27%  Similarity=0.374  Sum_probs=68.0

Q ss_pred             EcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEccCCcCC
Q 027850           75 DLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLT  154 (218)
Q Consensus        75 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  154 (218)
                      .+.+|.+. .+|..+.++..|++++++.|+++ .+|..++.++ |+.|-+++|+++ .+|+.++....|..|+.+.|.+.
T Consensus       104 iLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~  179 (722)
T KOG0532|consen  104 ILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ  179 (722)
T ss_pred             HHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh
Confidence            33334443 34555555566666666666665 5555554442 555566666665 55555665566666666666665


Q ss_pred             CCCChhccCCCCCCEEEeeCCcccccCCCCCCCCCCCcccccCCC
Q 027850          155 GKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNP  199 (218)
Q Consensus       155 ~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~L~~L~l~~N~  199 (218)
                       .+|..++.+.+|+.|.+..|++...+++...+ .|..||++.|+
T Consensus       180 -slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNk  222 (722)
T KOG0532|consen  180 -SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNK  222 (722)
T ss_pred             -hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCc
Confidence             55555666666666666666666555554422 46666776663

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.77  E-value=2.6e-09  Score=89.29  Aligned_cols=102  Identities=41%  Similarity=0.652  Sum_probs=54.6

Q ss_pred             CEEEEEcCCCCCccccCcccCCCC-CCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEc
Q 027850           70 RVTRLDLGNGKLSGNLVPELGKLE-RLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRL  148 (218)
Q Consensus        70 ~l~~L~l~~~~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  148 (218)
                      .++.+++.++.+. .+++....+. +|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|......+.|+.|++
T Consensus       117 ~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         117 NLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             ceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence            4666666666665 3444444443 6666666666666 44444556666666666666666 44444335555555555


Q ss_pred             cCCcCCCCCChhccCCCCCCEEEeeCC
Q 027850          149 NGNKLTGKIPRELTKLGNLKILDVSNN  175 (218)
Q Consensus       149 ~~n~l~~~~p~~~~~l~~L~~L~l~~N  175 (218)
                      ++|++. .+|........|+++.+++|
T Consensus       194 s~N~i~-~l~~~~~~~~~L~~l~~~~N  219 (394)
T COG4886         194 SGNKIS-DLPPEIELLSALEELDLSNN  219 (394)
T ss_pred             cCCccc-cCchhhhhhhhhhhhhhcCC
Confidence            555555 33433333333444444444

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.76  E-value=1.2e-10  Score=100.35  Aligned_cols=129  Identities=27%  Similarity=0.249  Sum_probs=101.6

Q ss_pred             CEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEcc
Q 027850           70 RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLN  149 (218)
Q Consensus        70 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  149 (218)
                      .+...+.++|.+. ....++.-++.++.|+|++|++....  .+..+++|.+||+++|.++ .+|..-..-.+|+.|.++
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLR  240 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhhheeeeec
Confidence            4666788888877 56677888899999999999998433  6888999999999999998 666422222359999999


Q ss_pred             CCcCCCCCChhccCCCCCCEEEeeCCcccccCC--CCCCCCCCCcccccCCCCCCCC
Q 027850          150 GNKLTGKIPRELTKLGNLKILDVSNNDLCGTIP--TAGSFSKFSEESFMNNPRLEGP  204 (218)
Q Consensus       150 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~--~~~~l~~L~~L~l~~N~~l~~~  204 (218)
                      +|.++..  ..+.++++|+.||+++|-+.+...  ..+.+..|+.|.+.|||.-|.+
T Consensus       241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            9998722  347899999999999998886533  2378889999999999865543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.73  E-value=7.1e-09  Score=86.65  Aligned_cols=125  Identities=34%  Similarity=0.519  Sum_probs=68.3

Q ss_pred             CEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEcc
Q 027850           70 RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLN  149 (218)
Q Consensus        70 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  149 (218)
                      +++.|++++|.+. .++..+..+++|+.|++++|.+. .+|......+.|+.|++++|+++ .+|........|+++.++
T Consensus       141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~  217 (394)
T COG4886         141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS  217 (394)
T ss_pred             hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhc
Confidence            4566666666655 33344555666666666666666 44444445566666666666666 445444344446666666


Q ss_pred             CCcCCCCCChhccCCCCCCEEEeeCCcccccCCCCCCCCCCCcccccCC
Q 027850          150 GNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNN  198 (218)
Q Consensus       150 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~L~~L~l~~N  198 (218)
                      +|.+. ..+..+..+.++..+.+.+|++...+.....+++++.|++++|
T Consensus       218 ~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n  265 (394)
T COG4886         218 NNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN  265 (394)
T ss_pred             CCcce-ecchhhhhcccccccccCCceeeeccchhccccccceeccccc
Confidence            66433 3444455555666666656655533222255555666666666

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.73  E-value=7.3e-10  Score=89.45  Aligned_cols=114  Identities=25%  Similarity=0.262  Sum_probs=97.0

Q ss_pred             ccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEccC-CcCCCCCChhcc
Q 027850           84 NLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNG-NKLTGKIPRELT  162 (218)
Q Consensus        84 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~~~  162 (218)
                      ++|..+.  +.-..++|..|+|+...|.+|+.+++|+.||+++|.|+..-|+.|.+++.+.+|-+.+ |+|+......|+
T Consensus        60 eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~  137 (498)
T KOG4237|consen   60 EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFG  137 (498)
T ss_pred             cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence            4444432  3567899999999977778899999999999999999988899999999988877766 899966667899


Q ss_pred             CCCCCCEEEeeCCcccccCCCC-CCCCCCCcccccCCC
Q 027850          163 KLGNLKILDVSNNDLCGTIPTA-GSFSKFSEESFMNNP  199 (218)
Q Consensus       163 ~l~~L~~L~l~~N~l~~~~~~~-~~l~~L~~L~l~~N~  199 (218)
                      ++.+|+.|.+.-|++....... ..++++..|.+..|.
T Consensus       138 gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~  175 (498)
T KOG4237|consen  138 GLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK  175 (498)
T ss_pred             hHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh
Confidence            9999999999999998777666 889999999999984

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.69  E-value=2.2e-09  Score=84.16  Aligned_cols=102  Identities=26%  Similarity=0.345  Sum_probs=84.5

Q ss_pred             CCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEccCCcCCCCCChhccCCCCCCEEEe
Q 027850           93 ERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDV  172 (218)
Q Consensus        93 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  172 (218)
                      ..|+.+|+++|.|+ .+.....-.+.++.|++++|.+. .+ +.+..+++|++||+++|.++ .+..+-.++.+.++|.+
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence            45889999999999 67777888899999999999988 33 34888899999999999988 66666678889999999


Q ss_pred             eCCcccccCCCCCCCCCCCcccccCCC
Q 027850          173 SNNDLCGTIPTAGSFSKFSEESFMNNP  199 (218)
Q Consensus       173 ~~N~l~~~~~~~~~l~~L~~L~l~~N~  199 (218)
                      ++|.+. .....+.+.+|..|++++|.
T Consensus       360 a~N~iE-~LSGL~KLYSLvnLDl~~N~  385 (490)
T KOG1259|consen  360 AQNKIE-TLSGLRKLYSLVNLDLSSNQ  385 (490)
T ss_pred             hhhhHh-hhhhhHhhhhheeccccccc
Confidence            999876 33444778899999999993

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.62  E-value=5.9e-08  Score=54.59  Aligned_cols=40  Identities=50%  Similarity=1.128  Sum_probs=30.3

Q ss_pred             chHHHHHHHHHHhcC-CCCCCCCCCCCCC-CCCCCcceeEeC
Q 027850           27 NVEGDALFALRRAVK-DPQGVLQSWDPTL-VDPCTWFHVTCD   66 (218)
Q Consensus        27 ~~~~~~l~~~~~~~~-~~~~~l~~w~~~~-~~~c~~~~v~c~   66 (218)
                      +.|+++|++||.++. ++...+.+|+... .++|+|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            468999999999998 4667899998764 799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.54  E-value=3e-08  Score=89.87  Aligned_cols=104  Identities=26%  Similarity=0.358  Sum_probs=58.3

Q ss_pred             CEEEEEcCCCC--CccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEE
Q 027850           70 RVTRLDLGNGK--LSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLR  147 (218)
Q Consensus        70 ~l~~L~l~~~~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  147 (218)
                      .++.|-+..|.  +.......|..++.|+.||+++|.-.+.+|..++.+-+|++|+++++.+. .+|..++++..|.+|+
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln  624 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN  624 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence            35555555543  33222233555666666666665554556666666666666666666666 5666666666666666


Q ss_pred             ccCCcCCCCCChhccCCCCCCEEEeeC
Q 027850          148 LNGNKLTGKIPRELTKLGNLKILDVSN  174 (218)
Q Consensus       148 l~~n~l~~~~p~~~~~l~~L~~L~l~~  174 (218)
                      +..+.....+|.....+.+|++|.+-.
T Consensus       625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  625 LEVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             cccccccccccchhhhcccccEEEeec
Confidence            665554434444445566666666544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.51  E-value=7.7e-08  Score=87.31  Aligned_cols=127  Identities=24%  Similarity=0.309  Sum_probs=102.5

Q ss_pred             CCEEEEEcCCCCCccccCcccCCCCCCCEEEccCCc--CCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEE
Q 027850           69 NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNN--LAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFL  146 (218)
Q Consensus        69 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  146 (218)
                      ..++++.+-+|.+. .++... ..+.|++|-+..|.  +.......|..++.|+.||+++|.--+.+|+.++.+-+|++|
T Consensus       523 ~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL  600 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL  600 (889)
T ss_pred             hheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence            35677777777765 333332 34479999999986  553444558889999999999988767899999999999999


Q ss_pred             EccCCcCCCCCChhccCCCCCCEEEeeCCcccccCCCC-CCCCCCCcccccCC
Q 027850          147 RLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTA-GSFSKFSEESFMNN  198 (218)
Q Consensus       147 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~~-~~l~~L~~L~l~~N  198 (218)
                      +++++.+. .+|..+.+++.|.+|++..+.-...++.. ..+++|++|.+...
T Consensus       601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence            99999999 89999999999999999988766566666 66999999988654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.40  E-value=5.6e-08  Score=79.59  Aligned_cols=83  Identities=24%  Similarity=0.258  Sum_probs=42.3

Q ss_pred             CCCCCEEEccCCcCCCCCcccCCCCCCCCEEEccCCcCCCCCC--hhccCCCCCCEEEeeCCccccc-CCCC------CC
Q 027850          116 LKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIP--RELTKLGNLKILDVSNNDLCGT-IPTA------GS  186 (218)
Q Consensus       116 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--~~~~~l~~L~~L~l~~N~l~~~-~~~~------~~  186 (218)
                      +++|+.|++..|...........-+..|++|++++|++. ..+  ...+.++.|+.|+++.+.+... .|..      ..
T Consensus       221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~  299 (505)
T KOG3207|consen  221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHT  299 (505)
T ss_pred             CCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcc
Confidence            445555555555321121222233445666666666654 222  3345666666666666665543 1211      34


Q ss_pred             CCCCCcccccCCC
Q 027850          187 FSKFSEESFMNNP  199 (218)
Q Consensus       187 l~~L~~L~l~~N~  199 (218)
                      +++|+.|++..|+
T Consensus       300 f~kL~~L~i~~N~  312 (505)
T KOG3207|consen  300 FPKLEYLNISENN  312 (505)
T ss_pred             cccceeeecccCc
Confidence            5667777776663

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.37  E-value=7.2e-08  Score=81.18  Aligned_cols=123  Identities=32%  Similarity=0.437  Sum_probs=68.6

Q ss_pred             EEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEccC
Q 027850           71 VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNG  150 (218)
Q Consensus        71 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~  150 (218)
                      +..+++..|.+.. +-..+..+.+|+.+++.+|.|. .+...+..+++|++|++++|.|+..  ..+..++.|+.|++.+
T Consensus        74 l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   74 LKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSG  149 (414)
T ss_pred             HHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhheecc
Confidence            3444455555442 2233555666666667666666 3333255566667777777766633  2344555566667777


Q ss_pred             CcCCCCCChhccCCCCCCEEEeeCCcccccCCC-CCCCCCCCcccccCCC
Q 027850          151 NKLTGKIPRELTKLGNLKILDVSNNDLCGTIPT-AGSFSKFSEESFMNNP  199 (218)
Q Consensus       151 n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~-~~~l~~L~~L~l~~N~  199 (218)
                      |.++ .+. .+..++.|+.+++++|.+...-+. ...+.+++.+.+.+|.
T Consensus       150 N~i~-~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~  197 (414)
T KOG0531|consen  150 NLIS-DIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS  197 (414)
T ss_pred             Ccch-hcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence            7665 222 244466666666666666643331 3445566666666663

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.33  E-value=5.4e-07  Score=50.84  Aligned_cols=36  Identities=44%  Similarity=0.698  Sum_probs=17.5

Q ss_pred             CCCEEEccCCcCCCCCChhccCCCCCCEEEeeCCccc
Q 027850          142 NLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLC  178 (218)
Q Consensus       142 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~  178 (218)
                      +|++|++++|+++ .+|..+..+++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4455555555555 34444555555555555555544

...

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=1.7e-07  Score=76.87  Aligned_cols=141  Identities=20%  Similarity=0.121  Sum_probs=93.8

Q ss_pred             CCcceeEeCCCCCEEEEEcCCCCCcccc-CcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCc--
Q 027850           58 CTWFHVTCDADNRVTRLDLGNGKLSGNL-VPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIP--  134 (218)
Q Consensus        58 c~~~~v~c~~~~~l~~L~l~~~~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--  134 (218)
                      |.|....-....+++.|.++.|+++..- ......+|+|+.|++..|...........-+..|+.||+++|.+.. .+  
T Consensus       186 ~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~  264 (505)
T KOG3207|consen  186 NFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQG  264 (505)
T ss_pred             CCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccc
Confidence            3444444444456777777777765321 1223456788888888884322333334457889999999999873 33  


Q ss_pred             ccCCCCCCCCEEEccCCcCCCC-CChh-----ccCCCCCCEEEeeCCcccccC--CCCCCCCCCCcccccCCC
Q 027850          135 PSLSRLSNLKFLRLNGNKLTGK-IPRE-----LTKLGNLKILDVSNNDLCGTI--PTAGSFSKFSEESFMNNP  199 (218)
Q Consensus       135 ~~~~~l~~L~~L~l~~n~l~~~-~p~~-----~~~l~~L~~L~l~~N~l~~~~--~~~~~l~~L~~L~l~~N~  199 (218)
                      ...+.++.|..|+++.+.+... .|+.     ...+++|++|++..|++....  -....+.+|++|.+..|+
T Consensus       265 ~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~  337 (505)
T KOG3207|consen  265 YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY  337 (505)
T ss_pred             cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence            4567889999999999988742 2222     356889999999999986332  223567788888888873

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.24  E-value=2.2e-06  Score=63.73  Aligned_cols=102  Identities=28%  Similarity=0.335  Sum_probs=73.7

Q ss_pred             CEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCc--ccCCCCCCCCEEE
Q 027850           70 RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIP--PSLSRLSNLKFLR  147 (218)
Q Consensus        70 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--~~~~~l~~L~~L~  147 (218)
                      ....+||++|.+..  .+.|..++.|++|.+.+|.|+.+.|.--..+++|..|.+.+|.+. .+.  +.+..+++|++|.
T Consensus        43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceee
Confidence            45678888888763  345777888889999999988666655556778888888888876 332  3466778888888


Q ss_pred             ccCCcCCCCC---ChhccCCCCCCEEEeeC
Q 027850          148 LNGNKLTGKI---PRELTKLGNLKILDVSN  174 (218)
Q Consensus       148 l~~n~l~~~~---p~~~~~l~~L~~L~l~~  174 (218)
                      +-+|.++..-   -..+..+++|+.||.+.
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhh
Confidence            8888876221   12356788888888764

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.23  E-value=1.3e-06  Score=49.31  Aligned_cols=36  Identities=44%  Similarity=0.708  Sum_probs=17.5

Q ss_pred             CCCEEEccCCcCCCCCcccCCCCCCCCEEEccCCcCC
Q 027850          118 SLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLT  154 (218)
Q Consensus       118 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  154 (218)
                      +|++|++++|+++ .+|+.+..+++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4455555555555 34444555555555555555554

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.19  E-value=1.9e-08  Score=70.27  Aligned_cols=84  Identities=26%  Similarity=0.402  Sum_probs=45.6

Q ss_pred             CCCCCEEEccCCcCCCCCCcccc-cCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEccCCcCCCCCChhccCCCCCCEE
Q 027850           92 LERLQYLELYMNNLAGQIPKELG-QLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKIL  170 (218)
Q Consensus        92 l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  170 (218)
                      ...|+..++++|.+. ..|+.|. .++.++.+++++|.+. .+|..+..++.|+.++++.|.+. ..|+.+..+.++..|
T Consensus        52 ~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L  128 (177)
T KOG4579|consen   52 GYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML  128 (177)
T ss_pred             CceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence            344455555555555 3343333 2345555666666655 45555556666666666666655 445555555556666


Q ss_pred             EeeCCccc
Q 027850          171 DVSNNDLC  178 (218)
Q Consensus       171 ~l~~N~l~  178 (218)
                      +..+|...
T Consensus       129 ds~~na~~  136 (177)
T KOG4579|consen  129 DSPENARA  136 (177)
T ss_pred             cCCCCccc
Confidence            65555544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.18  E-value=7.6e-08  Score=67.29  Aligned_cols=108  Identities=22%  Similarity=0.331  Sum_probs=83.6

Q ss_pred             CCEEEEEcCCCCCccccCcccC-CCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEE
Q 027850           69 NRVTRLDLGNGKLSGNLVPELG-KLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLR  147 (218)
Q Consensus        69 ~~l~~L~l~~~~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  147 (218)
                      -+++.+++++|.+. .+|+.|. +++.++.|++++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.++..|+
T Consensus        53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD  129 (177)
T ss_pred             ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence            47899999999998 5565554 5678999999999999 88988999999999999999999 7788788899999999


Q ss_pred             ccCCcCCCCCChhccCCCCCCEEEeeCCccccc
Q 027850          148 LNGNKLTGKIPRELTKLGNLKILDVSNNDLCGT  180 (218)
Q Consensus       148 l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~~~  180 (218)
                      ..+|.+. .+|..+-.-...-..++.++.+.+.
T Consensus       130 s~~na~~-eid~dl~~s~~~al~~lgnepl~~~  161 (177)
T KOG4579|consen  130 SPENARA-EIDVDLFYSSLPALIKLGNEPLGDE  161 (177)
T ss_pred             CCCCccc-cCcHHHhccccHHHHHhcCCccccc
Confidence            9999887 5554433222233334455555443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.17  E-value=3.9e-07  Score=76.74  Aligned_cols=104  Identities=29%  Similarity=0.338  Sum_probs=81.5

Q ss_pred             CCEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEc
Q 027850           69 NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRL  148 (218)
Q Consensus        69 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  148 (218)
                      .+++.+++.+|.|... ...+..+++|++|++++|.|+...+  +..++.|+.|++++|.+...  ..+..+..|+.+++
T Consensus        95 ~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l  169 (414)
T KOG0531|consen   95 KSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDL  169 (414)
T ss_pred             cceeeeeccccchhhc-ccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhc--cCCccchhhhcccC
Confidence            5789999999999843 3336778999999999999994433  66778899999999999843  45666889999999


Q ss_pred             cCCcCCCCCC-hhccCCCCCCEEEeeCCccc
Q 027850          149 NGNKLTGKIP-RELTKLGNLKILDVSNNDLC  178 (218)
Q Consensus       149 ~~n~l~~~~p-~~~~~l~~L~~L~l~~N~l~  178 (218)
                      ++|.+...-+ . ...+.+++.+++.+|.+.
T Consensus       170 ~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  170 SYNRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             Ccchhhhhhhhh-hhhccchHHHhccCCchh
Confidence            9999884433 1 467778888888888765

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.08  E-value=7.3e-06  Score=61.04  Aligned_cols=122  Identities=25%  Similarity=0.227  Sum_probs=84.0

Q ss_pred             EEEEcCCCCCccccCcccC-CCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEccC
Q 027850           72 TRLDLGNGKLSGNLVPELG-KLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNG  150 (218)
Q Consensus        72 ~~L~l~~~~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~  150 (218)
                      +++++.+.++.....  ++ .+.+...+|+++|.+. .++ .|..++.|..|.+.+|+|+..-|..-.-+++|..|.+.+
T Consensus        22 ~e~~LR~lkip~ien--lg~~~d~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn   97 (233)
T KOG1644|consen   22 RELDLRGLKIPVIEN--LGATLDQFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN   97 (233)
T ss_pred             cccccccccccchhh--ccccccccceecccccchh-hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence            456666665542111  11 2356778899999887 333 477888999999999999866665555667899999999


Q ss_pred             CcCCCCC-ChhccCCCCCCEEEeeCCcccccCCC----CCCCCCCCcccccC
Q 027850          151 NKLTGKI-PRELTKLGNLKILDVSNNDLCGTIPT----AGSFSKFSEESFMN  197 (218)
Q Consensus       151 n~l~~~~-p~~~~~l~~L~~L~l~~N~l~~~~~~----~~~l~~L~~L~l~~  197 (218)
                      |++.... -..+..+++|++|.+-+|.++...--    ...+++|+.||+++
T Consensus        98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen   98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            9886211 13367788999999988887643221    15678888888765

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.04  E-value=1.5e-07  Score=81.74  Aligned_cols=103  Identities=28%  Similarity=0.326  Sum_probs=80.0

Q ss_pred             CCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEccCCcCCCCCChhccCCCCCCEEEeeC
Q 027850           95 LQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSN  174 (218)
Q Consensus        95 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~  174 (218)
                      |...+.++|.+. .....+.-++.++.|++++|+++..  +.+..+++|++||+++|.+. .+|..-..--.|..|.+++
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrn  241 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRN  241 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecc
Confidence            556677777777 5666777889999999999999844  47889999999999999998 5564322223499999999


Q ss_pred             CcccccCCCCCCCCCCCcccccCCCCCCC
Q 027850          175 NDLCGTIPTAGSFSKFSEESFMNNPRLEG  203 (218)
Q Consensus       175 N~l~~~~~~~~~l~~L~~L~l~~N~~l~~  203 (218)
                      |.++. .-.+.++.+|+.||+++| .+.+
T Consensus       242 N~l~t-L~gie~LksL~~LDlsyN-ll~~  268 (1096)
T KOG1859|consen  242 NALTT-LRGIENLKSLYGLDLSYN-LLSE  268 (1096)
T ss_pred             cHHHh-hhhHHhhhhhhccchhHh-hhhc
Confidence            99873 344577889999999999 5544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.95  E-value=2.1e-06  Score=68.65  Aligned_cols=133  Identities=19%  Similarity=0.226  Sum_probs=87.0

Q ss_pred             CCEEEEEcCCCCCccccCcc----cCCCCCCCEEEccCCcCCCCCC-------------cccccCCCCCEEEccCCcCCC
Q 027850           69 NRVTRLDLGNGKLSGNLVPE----LGKLERLQYLELYMNNLAGQIP-------------KELGQLKSLISLDLYHNNLTG  131 (218)
Q Consensus        69 ~~l~~L~l~~~~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~p-------------~~~~~l~~L~~L~l~~n~l~~  131 (218)
                      ++++.||||.|.+....++.    +.....|+.|.|.+|.+...--             .....-+.|+.+..++|++..
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen  171 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN  171 (382)
T ss_pred             CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence            48999999999886443332    3456788888898888762111             113345778888888888763


Q ss_pred             C----CcccCCCCCCCCEEEccCCcCCCC----CChhccCCCCCCEEEeeCCcccccCC-----CCCCCCCCCcccccCC
Q 027850          132 P----IPPSLSRLSNLKFLRLNGNKLTGK----IPRELTKLGNLKILDVSNNDLCGTIP-----TAGSFSKFSEESFMNN  198 (218)
Q Consensus       132 ~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~~-----~~~~l~~L~~L~l~~N  198 (218)
                      .    +...|...+.|+.+.+..|.+...    +-..+..+++|+.|||.+|-++....     ....++.|++|+++++
T Consensus       172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc  251 (382)
T KOG1909|consen  172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC  251 (382)
T ss_pred             ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence            3    123456667888888888877521    12346677888888888887763321     1155667777877777


Q ss_pred             CCCC
Q 027850          199 PRLE  202 (218)
Q Consensus       199 ~~l~  202 (218)
                       .+.
T Consensus       252 -ll~  254 (382)
T KOG1909|consen  252 -LLE  254 (382)
T ss_pred             -ccc
Confidence             443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.76  E-value=0.00019  Score=59.77  Aligned_cols=31  Identities=10%  Similarity=-0.032  Sum_probs=14.2

Q ss_pred             CCCEEEeeCCcccccCCCCCCCCCCCcccccCC
Q 027850          166 NLKILDVSNNDLCGTIPTAGSFSKFSEESFMNN  198 (218)
Q Consensus       166 ~L~~L~l~~N~l~~~~~~~~~l~~L~~L~l~~N  198 (218)
                      +|++|++++|.....++..  ..+|+.|+++.|
T Consensus       157 SLk~L~Is~c~~i~LP~~L--P~SLk~L~ls~n  187 (426)
T PRK15386        157 SLKTLSLTGCSNIILPEKL--PESLQSITLHIE  187 (426)
T ss_pred             cccEEEecCCCcccCcccc--cccCcEEEeccc
Confidence            5666666665543211111  135555555443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.67  E-value=6.7e-06  Score=65.88  Aligned_cols=132  Identities=17%  Similarity=0.241  Sum_probs=96.2

Q ss_pred             CCCEEEEEcCCCCCccc----cCcccCCCCCCCEEEccCCcCCCC----CCcccccCCCCCEEEccCCcCCCC----Ccc
Q 027850           68 DNRVTRLDLGNGKLSGN----LVPELGKLERLQYLELYMNNLAGQ----IPKELGQLKSLISLDLYHNNLTGP----IPP  135 (218)
Q Consensus        68 ~~~l~~L~l~~~~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~  135 (218)
                      ...++++....|++...    +-..|...+.|+.+.++.|.|...    +-..+..+++|+.||+.+|.++..    +..
T Consensus       156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak  235 (382)
T KOG1909|consen  156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK  235 (382)
T ss_pred             CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence            35789999999987532    223456668899999999988621    223467789999999999988743    335


Q ss_pred             cCCCCCCCCEEEccCCcCCCCCChhc-----cCCCCCCEEEeeCCcccccCC-----CCCCCCCCCcccccCCC
Q 027850          136 SLSRLSNLKFLRLNGNKLTGKIPREL-----TKLGNLKILDVSNNDLCGTIP-----TAGSFSKFSEESFMNNP  199 (218)
Q Consensus       136 ~~~~l~~L~~L~l~~n~l~~~~p~~~-----~~l~~L~~L~l~~N~l~~~~~-----~~~~l~~L~~L~l~~N~  199 (218)
                      .++.+++|+.++++++.+...-...+     ...++|+.+.+.+|.++..-.     .....+.|..|.+++|.
T Consensus       236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence            67788899999999998875433222     357899999999999874311     11457889999999993

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.63  E-value=1.5e-05  Score=70.94  Aligned_cols=127  Identities=18%  Similarity=0.249  Sum_probs=67.0

Q ss_pred             CEEEEEcCCCCCc-cccCccc-CCCCCCCEEEccCCcCCCC-CCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEE
Q 027850           70 RVTRLDLGNGKLS-GNLVPEL-GKLERLQYLELYMNNLAGQ-IPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFL  146 (218)
Q Consensus        70 ~l~~L~l~~~~l~-~~~~~~~-~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  146 (218)
                      +++.||+++...- ...+..+ ..+|+|+.|.+.+-.+... .-....++++|..||++++.++..  ..++.+++|+.|
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L  200 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL  200 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence            5666666664321 1111112 2357777777766555421 122234567777777777776632  556666777766


Q ss_pred             EccCCcCCC-CCChhccCCCCCCEEEeeCCcccccC--C----CC-CCCCCCCcccccCC
Q 027850          147 RLNGNKLTG-KIPRELTKLGNLKILDVSNNDLCGTI--P----TA-GSFSKFSEESFMNN  198 (218)
Q Consensus       147 ~l~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~~~~--~----~~-~~l~~L~~L~l~~N  198 (218)
                      .+.+=.+.. ..-..+..+++|+.||+|........  .    +. ..+++|+.||.++.
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT  260 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT  260 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence            666555442 11233556677777777654332211  1    11 34666666666655

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.53  E-value=6e-05  Score=58.23  Aligned_cols=66  Identities=30%  Similarity=0.320  Sum_probs=29.2

Q ss_pred             cCCCCCCCEEEccCC--cCCCCCCcccccCCCCCEEEccCCcCCCC-CcccCCCCCCCCEEEccCCcCC
Q 027850           89 LGKLERLQYLELYMN--NLAGQIPKELGQLKSLISLDLYHNNLTGP-IPPSLSRLSNLKFLRLNGNKLT  154 (218)
Q Consensus        89 ~~~l~~L~~L~l~~n--~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~  154 (218)
                      |..+++|+.|.++.|  ++.+..+.-...+++|+++++++|+++.. --..+..+.+|..|++.+|..+
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence            334455555555555  33333333333345555555555555421 0012233344445555554433

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.53  E-value=6.7e-05  Score=57.99  Aligned_cols=109  Identities=25%  Similarity=0.270  Sum_probs=72.5

Q ss_pred             cCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCC--cCCCCCcccCCCCCCCCEEEccCCcCCC-CCChhc
Q 027850           85 LVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHN--NLTGPIPPSLSRLSNLKFLRLNGNKLTG-KIPREL  161 (218)
Q Consensus        85 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n--~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~  161 (218)
                      +....-.+..|+.+.+.+..++. + ..+..+++|+.|.++.|  ++.+.++.....+++|+++++++|+++- .--..+
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl  112 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL  112 (260)
T ss_pred             cccccccccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence            33334455667777777777762 2 24667889999999999  6666666666677999999999999872 111235


Q ss_pred             cCCCCCCEEEeeCCcccccCCC---C-CCCCCCCcccc
Q 027850          162 TKLGNLKILDVSNNDLCGTIPT---A-GSFSKFSEESF  195 (218)
Q Consensus       162 ~~l~~L~~L~l~~N~l~~~~~~---~-~~l~~L~~L~l  195 (218)
                      ..+.+|..|++.+|..+..--.   . .-+++|+.|+-
T Consensus       113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             hhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            5677788899988876652111   1 34566666653

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.25  E-value=0.00012  Score=65.27  Aligned_cols=113  Identities=18%  Similarity=0.210  Sum_probs=82.7

Q ss_pred             CCCCEEEEEcCCCCCcc-ccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCC-CcccCCCCCCCC
Q 027850           67 ADNRVTRLDLGNGKLSG-NLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGP-IPPSLSRLSNLK  144 (218)
Q Consensus        67 ~~~~l~~L~l~~~~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~  144 (218)
                      ..+.+++|.+++-.+.. .+.....++++|..||+++..++..  ..++.+++|+.|.+.+=.+... .-..+..+++|+
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~  223 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR  223 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence            34689999999877643 2334456789999999999999843  5688899999998888766631 123567899999


Q ss_pred             EEEccCCcCCCCC--C----hhccCCCCCCEEEeeCCcccccC
Q 027850          145 FLRLNGNKLTGKI--P----RELTKLGNLKILDVSNNDLCGTI  181 (218)
Q Consensus       145 ~L~l~~n~l~~~~--p----~~~~~l~~L~~L~l~~N~l~~~~  181 (218)
                      .||+|..+.....  .    +.-..+|+|+.||.+++.+....
T Consensus       224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~  266 (699)
T KOG3665|consen  224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI  266 (699)
T ss_pred             eeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence            9999988755221  1    12245899999999998776543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.24  E-value=5.6e-06  Score=64.66  Aligned_cols=100  Identities=28%  Similarity=0.275  Sum_probs=73.5

Q ss_pred             CCCEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCC-cccCCCCCCCCEE
Q 027850           68 DNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPI-PPSLSRLSNLKFL  146 (218)
Q Consensus        68 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L  146 (218)
                      ..+|+.|++-++.+.++  ....+|+.|+.|.|+-|+|+..-|  +..++.|+.|+|..|.|...- -..+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            34677788888877643  224578889999999999884433  778889999999999887431 1467788899999


Q ss_pred             EccCCcCCCCCCh-----hccCCCCCCEEE
Q 027850          147 RLNGNKLTGKIPR-----ELTKLGNLKILD  171 (218)
Q Consensus       147 ~l~~n~l~~~~p~-----~~~~l~~L~~L~  171 (218)
                      .+..|.-.+.-+.     .+..+++|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            9998887665553     356778888876

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.23  E-value=0.0013  Score=54.90  Aligned_cols=107  Identities=21%  Similarity=0.317  Sum_probs=61.7

Q ss_pred             CCCcceeEeCCCCCEEEEEcCCCCCccccCcccCCCCCCCEEEccCC-cCCCCCCcccccCCCCCEEEccCCcCC--CCC
Q 027850           57 PCTWFHVTCDADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMN-NLAGQIPKELGQLKSLISLDLYHNNLT--GPI  133 (218)
Q Consensus        57 ~c~~~~v~c~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~l~~L~~L~l~~n~l~--~~~  133 (218)
                      .|.+..++ ..+.+++.|.++++.--..+|..+  .++|+.|++++| .+. .+|.      +|+.|++..+...  +.+
T Consensus        61 ~c~L~sLP-~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n~~~~L~~L  130 (426)
T PRK15386         61 DCDIESLP-VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVRSLEIKGSATDSIKNV  130 (426)
T ss_pred             CCCCcccC-CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------ccceEEeCCCCCcccccC
Confidence            45555554 345568888887644323445433  257788888877 443 4443      3455555544321  134


Q ss_pred             cccCCCC------------------CCCCEEEccCCcCCCCCChhccCCCCCCEEEeeCCc
Q 027850          134 PPSLSRL------------------SNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNND  176 (218)
Q Consensus       134 p~~~~~l------------------~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~  176 (218)
                      |..+..+                  ++|++|+++++... ..|..+.  .+|++|+++.+.
T Consensus       131 PssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~  188 (426)
T PRK15386        131 PNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ  188 (426)
T ss_pred             cchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence            4333222                  37889999888765 3444333  589999998763

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.15  E-value=6.8e-05  Score=59.30  Aligned_cols=83  Identities=30%  Similarity=0.329  Sum_probs=56.8

Q ss_pred             CCEEEEEcCCCCCcc--ccCcccCCCCCCCEEEccCCcCCCCCCccc-ccCCCCCEEEccCCcCCCCCc-ccCCCCCCCC
Q 027850           69 NRVTRLDLGNGKLSG--NLVPELGKLERLQYLELYMNNLAGQIPKEL-GQLKSLISLDLYHNNLTGPIP-PSLSRLSNLK  144 (218)
Q Consensus        69 ~~l~~L~l~~~~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~  144 (218)
                      .+|+.+||.+|.|+.  ++...+.++|.|+.|+++.|.+...+. .+ ....+|+.|.+.+..+.+... ..+..++.++
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            368888888888863  223345678888889998888873332 22 356788888888887765432 3456677777


Q ss_pred             EEEccCCc
Q 027850          145 FLRLNGNK  152 (218)
Q Consensus       145 ~L~l~~n~  152 (218)
                      .|.++.|.
T Consensus       150 elHmS~N~  157 (418)
T KOG2982|consen  150 ELHMSDNS  157 (418)
T ss_pred             hhhhccch
Confidence            77777774

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.02  E-value=3.9e-05  Score=60.63  Aligned_cols=58  Identities=24%  Similarity=0.209  Sum_probs=34.4

Q ss_pred             CCCCCCEEEccCCc-CCCCCChhccCCCCCCEEEeeCCcccccCCC----CCCCCCCCcccccCC
Q 027850          139 RLSNLKFLRLNGNK-LTGKIPRELTKLGNLKILDVSNNDLCGTIPT----AGSFSKFSEESFMNN  198 (218)
Q Consensus       139 ~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~l~~N~l~~~~~~----~~~l~~L~~L~l~~N  198 (218)
                      .+++|.+||++.+. ++...-..+.+++.|++|.++.|+.  .+|+    ....++|.+|++-+.
T Consensus       311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            45666777776654 3333334456667777777776653  3333    256677777776665

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.85  E-value=0.0032  Score=43.74  Aligned_cols=77  Identities=18%  Similarity=0.173  Sum_probs=26.5

Q ss_pred             EEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEccC
Q 027850           71 VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNG  150 (218)
Q Consensus        71 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~  150 (218)
                      ++.+.+.. .+.......|..+++|+.+.+.++ +.......|..+++++.+.+.+ .+.......|..+++|+.+.+..
T Consensus        14 l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~   90 (129)
T PF13306_consen   14 LESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPS   90 (129)
T ss_dssp             --EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETT
T ss_pred             CCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCc
Confidence            44444442 233333344444545555555443 3322233344444455555543 22111122334444455444433

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.75  E-value=0.0019  Score=50.70  Aligned_cols=129  Identities=18%  Similarity=0.166  Sum_probs=72.4

Q ss_pred             CCEEEEEcCCCCCccccCcc----cCCCCCCCEEEccCCcCCCCCCccc-------------ccCCCCCEEEccCCcCCC
Q 027850           69 NRVTRLDLGNGKLSGNLVPE----LGKLERLQYLELYMNNLAGQIPKEL-------------GQLKSLISLDLYHNNLTG  131 (218)
Q Consensus        69 ~~l~~L~l~~~~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~p~~~-------------~~l~~L~~L~l~~n~l~~  131 (218)
                      ++++.++|+.|.+....|+.    ++.-..|..|.+++|.+...--..+             .+-+.|+......|++..
T Consensus        92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen  171 (388)
T COG5238          92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN  171 (388)
T ss_pred             CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc
Confidence            46777777777766555543    3445667777777776652211111             233667777777777652


Q ss_pred             CCc-----ccCCCCCCCCEEEccCCcCCCCCC-----hhccCCCCCCEEEeeCCcccccCCC-----CCCCCCCCccccc
Q 027850          132 PIP-----PSLSRLSNLKFLRLNGNKLTGKIP-----RELTKLGNLKILDVSNNDLCGTIPT-----AGSFSKFSEESFM  196 (218)
Q Consensus       132 ~~p-----~~~~~l~~L~~L~l~~n~l~~~~p-----~~~~~l~~L~~L~l~~N~l~~~~~~-----~~~l~~L~~L~l~  196 (218)
                       .|     ..+....+|+++.+..|.|.-.-.     ..+..+.+|+.||+++|.++-....     ...++.|++|.+.
T Consensus       172 -gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln  250 (388)
T COG5238         172 -GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN  250 (388)
T ss_pred             -CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence             22     123333567777777777652110     1234567788888888876632221     1345556777766


Q ss_pred             CC
Q 027850          197 NN  198 (218)
Q Consensus       197 ~N  198 (218)
                      .|
T Consensus       251 DC  252 (388)
T COG5238         251 DC  252 (388)
T ss_pred             ch
Confidence            66

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.75  E-value=0.00032  Score=55.61  Aligned_cols=88  Identities=31%  Similarity=0.347  Sum_probs=61.4

Q ss_pred             CCCCCCEEEccCCcCCCC--CCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEccCCcCCCC-CChhccCCCCC
Q 027850           91 KLERLQYLELYMNNLAGQ--IPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGK-IPRELTKLGNL  167 (218)
Q Consensus        91 ~l~~L~~L~l~~n~l~~~--~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L  167 (218)
                      ..+.++.+||.+|.|+..  +-..+.+++.|+.|+++.|.+...+...-....+|+++-+.++.+... ....+..+|.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            356788999999999842  223356789999999999988743322113567899999988877532 22345677788


Q ss_pred             CEEEeeCCccc
Q 027850          168 KILDVSNNDLC  178 (218)
Q Consensus       168 ~~L~l~~N~l~  178 (218)
                      +.|+++.|.+.
T Consensus       149 telHmS~N~~r  159 (418)
T KOG2982|consen  149 TELHMSDNSLR  159 (418)
T ss_pred             hhhhhccchhh
Confidence            88888888544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.65  E-value=0.0069  Score=42.02  Aligned_cols=108  Identities=16%  Similarity=0.163  Sum_probs=64.1

Q ss_pred             CcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEccCCcCCCCCChhccCCC
Q 027850           86 VPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLG  165 (218)
Q Consensus        86 ~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~  165 (218)
                      ...|.+..+|+.+.+.. .+.......|..+++|+.+.+..+ +...-...|.++++++.+.+.. .+.......|..++
T Consensus         5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred             HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence            34577888999999885 566455677888999999999886 6533345788888999999976 44434455677899


Q ss_pred             CCCEEEeeCCcccccCCCC-CCCCCCCcccccCC
Q 027850          166 NLKILDVSNNDLCGTIPTA-GSFSKFSEESFMNN  198 (218)
Q Consensus       166 ~L~~L~l~~N~l~~~~~~~-~~l~~L~~L~l~~N  198 (218)
                      +|+.+++..+ +....... ... +++.+.+..+
T Consensus        82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~  113 (129)
T PF13306_consen   82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPSN  113 (129)
T ss_dssp             TECEEEETTT--BEEHTTTTTT--T--EEE-TTB
T ss_pred             cccccccCcc-ccEEchhhhcCC-CceEEEECCC
Confidence            9999999765 44343333 444 7887777654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.38  E-value=2.2e-05  Score=61.97  Aligned_cols=84  Identities=26%  Similarity=0.250  Sum_probs=45.6

Q ss_pred             CEEEEEcCCCCCcccc-CcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCc-CCCC-CcccCCCCCCCCEE
Q 027850           70 RVTRLDLGNGKLSGNL-VPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNN-LTGP-IPPSLSRLSNLKFL  146 (218)
Q Consensus        70 ~l~~L~l~~~~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~~~-~p~~~~~l~~L~~L  146 (218)
                      +++.+||++..|+... ...+..+.+|+.|.+.++++...+-..+..-..|+.++++++. ++.. ..-.+.+++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            4677777777665221 1223445666666666666665544455555666666666643 2211 01123455566666


Q ss_pred             EccCCcC
Q 027850          147 RLNGNKL  153 (218)
Q Consensus       147 ~l~~n~l  153 (218)
                      +++++.+
T Consensus       266 NlsWc~l  272 (419)
T KOG2120|consen  266 NLSWCFL  272 (419)
T ss_pred             CchHhhc
Confidence            6666544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.21  E-value=0.0037  Score=49.16  Aligned_cols=114  Identities=21%  Similarity=0.200  Sum_probs=66.9

Q ss_pred             ccCCCCCCCEEEccCCcCCCCCCcc----cccCCCCCEEEccCCcCCCCCcc-------------cCCCCCCCCEEEccC
Q 027850           88 ELGKLERLQYLELYMNNLAGQIPKE----LGQLKSLISLDLYHNNLTGPIPP-------------SLSRLSNLKFLRLNG  150 (218)
Q Consensus        88 ~~~~l~~L~~L~l~~n~l~~~~p~~----~~~l~~L~~L~l~~n~l~~~~p~-------------~~~~l~~L~~L~l~~  150 (218)
                      .+.+++.|+..+|+.|.+....|..    ++.-+.|.+|.+++|.+.-.-..             ...+-+.|++.....
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            3456777777777777776555543    34556777777777765411111             122346677777777


Q ss_pred             CcCCCCCCh----hccCCCCCCEEEeeCCcccccCCC------CCCCCCCCcccccCCCCCC
Q 027850          151 NKLTGKIPR----ELTKLGNLKILDVSNNDLCGTIPT------AGSFSKFSEESFMNNPRLE  202 (218)
Q Consensus       151 n~l~~~~p~----~~~~l~~L~~L~l~~N~l~~~~~~------~~~l~~L~~L~l~~N~~l~  202 (218)
                      |++..-...    .+..-..|+.+.+..|.|.-..-.      ...+.+|+.|+++.| .++
T Consensus       167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDN-tft  227 (388)
T COG5238         167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFT  227 (388)
T ss_pred             chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeecccc-chh
Confidence            776522111    122224677888888866522110      145678999999999 443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.95  E-value=0.0027  Score=29.85  Aligned_cols=10  Identities=70%  Similarity=0.720  Sum_probs=3.7

Q ss_pred             EEEccCCcCC
Q 027850          121 SLDLYHNNLT  130 (218)
Q Consensus       121 ~L~l~~n~l~  130 (218)
                      +||+++|+++
T Consensus         4 ~Ldls~n~l~   13 (22)
T PF00560_consen    4 YLDLSGNNLT   13 (22)
T ss_dssp             EEEETSSEES
T ss_pred             EEECCCCcCE
Confidence            3333333333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.68  E-value=0.004  Score=29.23  Aligned_cols=19  Identities=47%  Similarity=0.798  Sum_probs=11.0

Q ss_pred             CCEEEccCCcCCCCCCcccc
Q 027850           95 LQYLELYMNNLAGQIPKELG  114 (218)
Q Consensus        95 L~~L~l~~n~l~~~~p~~~~  114 (218)
                      |++|++++|.++ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            566666666666 5554443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.57  E-value=0.00026  Score=55.58  Aligned_cols=99  Identities=22%  Similarity=0.237  Sum_probs=73.8

Q ss_pred             CCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEccCCcCCCCC-ChhccCCCCCCEE
Q 027850           92 LERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKI-PRELTKLGNLKIL  170 (218)
Q Consensus        92 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L  170 (218)
                      +.+.+.|+.=++.+..+  .....++.|+.|.|+-|+|+..  ..+..+++|++|+|..|.|...- -..+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            45667778778887732  2345789999999999999954  44788999999999999987321 1346789999999


Q ss_pred             EeeCCcccccCCCC------CCCCCCCccc
Q 027850          171 DVSNNDLCGTIPTA------GSFSKFSEES  194 (218)
Q Consensus       171 ~l~~N~l~~~~~~~------~~l~~L~~L~  194 (218)
                      .|..|.=.|..+..      .-+++|+.|+
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            99999877654432      4567777766

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.29  E-value=0.00031  Score=53.78  Aligned_cols=84  Identities=27%  Similarity=0.301  Sum_probs=65.7

Q ss_pred             CCCEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEE
Q 027850           68 DNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLR  147 (218)
Q Consensus        68 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  147 (218)
                      ..+++.||++.|++. .....|..++.+..++++.|.+. ..|..+..+..++.+++..|..+ ..|.+++..+.+++++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            357888888888775 34455666777888888888887 77888888888888888888877 7788888888888888


Q ss_pred             ccCCcCC
Q 027850          148 LNGNKLT  154 (218)
Q Consensus       148 l~~n~l~  154 (218)
                      ..+|.+.
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            8887764

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.69  E-value=0.00031  Score=53.78  Aligned_cols=89  Identities=20%  Similarity=0.292  Sum_probs=75.5

Q ss_pred             ccCCCCCCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCCCcccCCCCCCCCEEEccCCcCCCCCChhccCCCCC
Q 027850           88 ELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNL  167 (218)
Q Consensus        88 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L  167 (218)
                      .+..+...+.||++.|++- .+-..|+.++.+..++++.|.+. ..|..++....+..+++..|..+ ..|..+...+.+
T Consensus        37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~  113 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP  113 (326)
T ss_pred             hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence            4556678889999999887 45556788889999999999998 78888888888899999999887 788899999999


Q ss_pred             CEEEeeCCcccc
Q 027850          168 KILDVSNNDLCG  179 (218)
Q Consensus       168 ~~L~l~~N~l~~  179 (218)
                      +++++-.|.+..
T Consensus       114 k~~e~k~~~~~~  125 (326)
T KOG0473|consen  114 KKNEQKKTEFFR  125 (326)
T ss_pred             chhhhccCcchH
Confidence            999999888654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.92  E-value=0.25  Score=23.84  Aligned_cols=13  Identities=46%  Similarity=0.677  Sum_probs=5.6

Q ss_pred             CCCEEEccCCcCC
Q 027850          142 NLKFLRLNGNKLT  154 (218)
Q Consensus       142 ~L~~L~l~~n~l~  154 (218)
                      +|++|++++|+++
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.92  E-value=0.25  Score=23.84  Aligned_cols=13  Identities=46%  Similarity=0.677  Sum_probs=5.6

Q ss_pred             CCCEEEccCCcCC
Q 027850          142 NLKFLRLNGNKLT  154 (218)
Q Consensus       142 ~L~~L~l~~n~l~  154 (218)
                      +|++|++++|+++
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444444

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.32  E-value=0.046  Score=41.17  Aligned_cols=80  Identities=24%  Similarity=0.244  Sum_probs=42.1

Q ss_pred             CEEEEEcCCCCCccccCcccCCCCCCCEEEccCCcCCCC-CCcccc-cCCCCCEEEccCCc-CCCCCcccCCCCCCCCEE
Q 027850           70 RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQ-IPKELG-QLKSLISLDLYHNN-LTGPIPPSLSRLSNLKFL  146 (218)
Q Consensus        70 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~p~~~~-~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L  146 (218)
                      .|+.+|-++..|..+-.+.+..++.++.|.+.++.--+. --+.+. -.++|+.|++++|. |+..--..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            477788888877766666677777777777766643210 000111 23556666666443 332212233444445444


Q ss_pred             Ecc
Q 027850          147 RLN  149 (218)
Q Consensus       147 ~l~  149 (218)
                      .+.
T Consensus       182 ~l~  184 (221)
T KOG3864|consen  182 HLY  184 (221)
T ss_pred             Hhc
Confidence            443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=87.19  E-value=0.31  Score=23.01  Aligned_cols=15  Identities=47%  Similarity=0.676  Sum_probs=7.9

Q ss_pred             CCCCEEEeeCCcccc
Q 027850          165 GNLKILDVSNNDLCG  179 (218)
Q Consensus       165 ~~L~~L~l~~N~l~~  179 (218)
                      ++|++|++++|.|++
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            456666666666553

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=86.86  E-value=0.15  Score=43.47  Aligned_cols=61  Identities=31%  Similarity=0.300  Sum_probs=25.0

Q ss_pred             CCCCCEEEccCCc-CCCCCcccC-CCCCCCCEEEccCCc-CCCC-CChhccCCCCCCEEEeeCCc
Q 027850          116 LKSLISLDLYHNN-LTGPIPPSL-SRLSNLKFLRLNGNK-LTGK-IPRELTKLGNLKILDVSNND  176 (218)
Q Consensus       116 l~~L~~L~l~~n~-l~~~~p~~~-~~l~~L~~L~l~~n~-l~~~-~p~~~~~l~~L~~L~l~~N~  176 (218)
                      +++|+.++++++. ++...-..+ ..+++|++|.+.++. ++.. +-.....+++|++|+++++.
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            4555555555544 332211111 124455555544443 2211 11122344555555555443

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=84.82  E-value=0.77  Score=22.43  Aligned_cols=14  Identities=43%  Similarity=0.546  Sum_probs=8.7

Q ss_pred             CCCCEEEeeCCccc
Q 027850          165 GNLKILDVSNNDLC  178 (218)
Q Consensus       165 ~~L~~L~l~~N~l~  178 (218)
                      .+|+.|++++|+|+
T Consensus         2 ~~L~~L~L~~NkI~   15 (26)
T smart00365        2 TNLEELDLSQNKIK   15 (26)
T ss_pred             CccCEEECCCCccc
Confidence            45666666666654

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=81.86  E-value=0.71  Score=30.46  Aligned_cols=20  Identities=35%  Similarity=0.207  Sum_probs=8.7

Q ss_pred             CchhhhHHHHHHHHHHHHhh
Q 027850            1 MAICRSGLFHLLVALVLSNT   20 (218)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~~   20 (218)
                      ||++...++-+++++++.++
T Consensus         1 MaSK~~llL~l~LA~lLlis   20 (95)
T PF07172_consen    1 MASKAFLLLGLLLAALLLIS   20 (95)
T ss_pred             CchhHHHHHHHHHHHHHHHH
Confidence            88444333333333333333

Some of them may be involved in resistance to environmental stress [].

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=81.74  E-value=1.1  Score=21.89  Aligned_cols=13  Identities=46%  Similarity=0.580  Sum_probs=6.7

Q ss_pred             CCCEEEccCCcCC
Q 027850          118 SLISLDLYHNNLT  130 (218)
Q Consensus       118 ~L~~L~l~~n~l~  130 (218)
                      +|+.|++++|+++
T Consensus         3 ~L~~L~vs~N~Lt   15 (26)
T smart00364        3 SLKELNVSNNQLT   15 (26)
T ss_pred             ccceeecCCCccc
Confidence            3455555555554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=81.02  E-value=0.38  Score=41.00  Aligned_cols=61  Identities=23%  Similarity=0.239  Sum_probs=26.6

Q ss_pred             CCCCCEEEccCCc-CCCCCCcccc-cCCCCCEEEccCCc-CCCC-CcccCCCCCCCCEEEccCCc
Q 027850           92 LERLQYLELYMNN-LAGQIPKELG-QLKSLISLDLYHNN-LTGP-IPPSLSRLSNLKFLRLNGNK  152 (218)
Q Consensus        92 l~~L~~L~l~~n~-l~~~~p~~~~-~l~~L~~L~l~~n~-l~~~-~p~~~~~l~~L~~L~l~~n~  152 (218)
                      +++|+.++++.+. ++...-..+. .+++|+.|.+.++. ++.. +-.....++.|++|+++++.
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            3555555555554 3321111111 24556666544444 2321 11222344556666665554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.65  E-value=0.15  Score=38.48  Aligned_cols=81  Identities=22%  Similarity=0.201  Sum_probs=46.6

Q ss_pred             CCCEEEccCCcCCCCCCcccccCCCCCEEEccCCcCCCC-CcccC-CCCCCCCEEEccCCc-CCCCCChhccCCCCCCEE
Q 027850           94 RLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGP-IPPSL-SRLSNLKFLRLNGNK-LTGKIPRELTKLGNLKIL  170 (218)
Q Consensus        94 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~~-~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L  170 (218)
                      .++.++-+++.|...--+.+..++.++.|.+.++.--+. .-+.+ +-.++|+.|++++|. |+..--..+.++++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            356677777777644444566667777777666642211 00111 133577888888663 554444556667777777


Q ss_pred             EeeC
Q 027850          171 DVSN  174 (218)
Q Consensus       171 ~l~~  174 (218)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            6654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	218
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		8e-19
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		8e-19
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-18
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-10
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		5e-04
4b8c_D	727	Nuclease Module Of The Yeast Ccr4-Not Complex Lengt		6e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 70/151 (46%), Gaps = 7/151 (4%)
Query: 69  NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNN 128
           N +  L L N   +G + P L     L  L L  N L+G IP  LG L  L  L L+ N 
Sbjct: 391 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 450
Query: 129 LTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPT-AGSF 187
           L G IP  L  +  L+ L L+ N LTG+IP  L+   NL  + +SNN L G IP   G  
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 188 SKFSEESFMNNPRLEGPELMGFVRYDVGDCK 218
              +     NN         G +  ++GDC+
Sbjct: 511 ENLAILKLSNN------SFSGNIPAELGDCR 535

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 70/151 (46%), Gaps = 7/151 (4%)
Query: 69  NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNN 128
           N +  L L N   +G + P L     L  L L  N L+G IP  LG L  L  L L+ N 
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 129 LTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPT-AGSF 187
           L G IP  L  +  L+ L L+ N LTG+IP  L+   NL  + +SNN L G IP   G  
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 188 SKFSEESFMNNPRLEGPELMGFVRYDVGDCK 218
              +     NN         G +  ++GDC+
Sbjct: 514 ENLAILKLSNN------SFSGNIPAELGDCR 538

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 89/187 (47%), Gaps = 35/187 (18%)
Query: 29  EGDALFALRRAVKDPQGVLQSWDPTLVDPC--TWFHVTCDADN---RVTRLDL------- 76
           +  AL  +++ + +P   L SW PT  D C  TW  V CD D    RV  LDL       
Sbjct: 7   DKQALLQIKKDLGNPT-TLSSWLPT-TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPK 64
Query: 77  --------------------GNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQL 116
                               G   L G + P + KL +L YL +   N++G IP  L Q+
Sbjct: 65  PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124
Query: 117 KSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNL-KILDVSNN 175
           K+L++LD  +N L+G +PPS+S L NL  +  +GN+++G IP        L   + +S N
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184
Query: 176 DLCGTIP 182
            L G IP
Sbjct: 185 RLTGKIP 191

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 72/183 (39%), Gaps = 47/183 (25%)
Query: 71  VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLI-SLDLYHNNL 129
           +  LD     LSG L P +  L  L  +    N ++G IP   G    L  S+ +  N L
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 130 TGPIPPSLSRLS----------------------------------------------NL 143
           TG IPP+ + L+                                              NL
Sbjct: 187 TGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNL 246
Query: 144 KFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLEG 203
             L L  N++ G +P+ LT+L  L  L+VS N+LCG IP  G+  +F   ++ NN  L G
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306
Query: 204 PEL 206
             L
Sbjct: 307 SPL 309

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 99  ELYMN-NLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKI 157
           ELY++ N    +PKEL   K L  +DL +N ++     S S ++ L  L L+ N+L    
Sbjct: 35  ELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 158 PRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFM 196
           PR    L +L++L +  ND+  ++   G+F+  S  S +
Sbjct: 95  PRTFDGLKSLRLLSLHGNDI--SVVPEGAFNDLSALSHL 131

>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 74  LDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPI 133
           LDL N ++  N+   + K + L  L L  N+L  ++P E+  L +L  LDL HN LT  +
Sbjct: 229 LDLSNLQI-FNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-L 285
Query: 134 PPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
           P  L     LK+     N +T  +P E   L NL+ L V  N L
Sbjct: 286 PAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPL 328

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	218
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-44
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-43
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-40
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-36
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-35
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-35
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-34
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-32
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-32
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-31
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-30
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-28
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-26
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-11
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	9e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	9e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	9e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	5e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	7e-05
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	4e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  149 bits (378), Expect = 3e-44
 Identities = 60/186 (32%), Positives = 86/186 (46%), Gaps = 33/186 (17%)

Query: 29  EGDALFALRRAVKDPQGVLQSWDPTL-VDPCTWFHVTCDAD---NRVTRLDLGNGKLSG- 83
           +  AL  +++ + +P   L SW PT      TW  V CD D    RV  LDL    L   
Sbjct: 7   DKQALLQIKKDLGNP-TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKP 65

Query: 84  --------NLV------------------PELGKLERLQYLELYMNNLAGQIPKELGQLK 117
                   NL                   P + KL +L YL +   N++G IP  L Q+K
Sbjct: 66  YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125

Query: 118 SLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNL-KILDVSNND 176
           +L++LD  +N L+G +PPS+S L NL  +  +GN+++G IP        L   + +S N 
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185

Query: 177 LCGTIP 182
           L G IP
Sbjct: 186 LTGKIP 191

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  147 bits (373), Expect = 2e-43
 Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 2/136 (1%)

Query: 71  VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLT 130
            T + +   +L+G + P    L  L +++L  N L G      G  K+   + L  N+L 
Sbjct: 176 FTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234

Query: 131 GPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKF 190
             +   +    NL  L L  N++ G +P+ LT+L  L  L+VS N+LCG IP  G+  +F
Sbjct: 235 FDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRF 293

Query: 191 SEESFMNNPRLEGPEL 206
              ++ NN  L G  L
Sbjct: 294 DVSAYANNKCLCGSPL 309

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 51.8 bits (125), Expect = 3e-08
 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 7/83 (8%)

Query: 108 QIPKELGQLKSLIS----LDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTG--KIPREL 161
           QI K+LG   +L S     D  +    G +  + ++   +  L L+G  L     IP  L
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 162 TKLGNLKILDVSN-NDLCGTIPT 183
             L  L  L +   N+L G IP 
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPP 95

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  143 bits (363), Expect = 9e-40
 Identities = 49/136 (36%), Positives = 74/136 (54%)

Query: 71  VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLT 130
               ++ +    G+  P       + +L++  N L+G IPKE+G +  L  L+L HN+++
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669

Query: 131 GPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKF 190
           G IP  +  L  L  L L+ NKL G+IP+ ++ L  L  +D+SNN+L G IP  G F  F
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETF 729

Query: 191 SEESFMNNPRLEGPEL 206
               F+NNP L G  L
Sbjct: 730 PPAKFLNNPGLCGYPL 745

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  132 bits (334), Expect = 8e-36
 Identities = 46/137 (33%), Positives = 66/137 (48%), Gaps = 2/137 (1%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
             L L    L G +  EL  ++ L+ L L  N+L G+IP  L    +L  + L +N LTG
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFS 191
            IP  + RL NL  L+L+ N  +G IP EL    +L  LD++ N   GTIP   +  K S
Sbjct: 505 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA--AMFKQS 562

Query: 192 EESFMNNPRLEGPELMG 208
            +   N    +    + 
Sbjct: 563 GKIAANFIAGKRYVYIK 579

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  131 bits (332), Expect = 2e-35
 Identities = 50/111 (45%), Positives = 72/111 (64%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
             L L    LSG +   LG L +L+ L+L++N L G+IP+EL  +K+L +L L  N+LTG
Sbjct: 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIP 182
            IP  LS  +NL ++ L+ N+LTG+IP+ + +L NL IL +SNN   G IP
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  130 bits (329), Expect = 4e-35
 Identities = 45/112 (40%), Positives = 56/112 (50%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
             L L N   +G + P L     L  L L  N L+G IP  LG L  L  L L+ N L G
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPT 183
            IP  L  +  L+ L L+ N LTG+IP  L+   NL  + +SNN L G IP 
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  127 bits (322), Expect = 3e-34
 Identities = 49/133 (36%), Positives = 63/133 (47%), Gaps = 12/133 (9%)

Query: 72  TRLDLGNGKLSGNLVPELGK--LERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNL 129
             LDL +   SG ++P L +     LQ L L  N   G+IP  L     L+SL L  N L
Sbjct: 371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 430

Query: 130 TGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSK 189
           +G IP SL  LS L+ L+L  N L G+IP+EL  +  L+ L +  NDL G IP       
Sbjct: 431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP------- 483

Query: 190 FSEESFMNNPRLE 202
                  N   L 
Sbjct: 484 ---SGLSNCTNLN 493

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  121 bits (305), Expect = 6e-32
 Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 4/112 (3%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
             LD+ +   S  + P LG    LQ+L++  N L+G   + +     L  L++  N   G
Sbjct: 203 EFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELT-KLGNLKILDVSNNDLCGTIP 182
           PIPP    L +L++L L  NK TG+IP  L+     L  LD+S N   G +P
Sbjct: 262 PIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  121 bits (305), Expect = 7e-32
 Identities = 55/238 (23%), Positives = 85/238 (35%), Gaps = 60/238 (25%)

Query: 22  ATSNANVEGDALFALRRAVKDPQGVLQSWDPTLVDPCTWFHVTCDADN------------ 69
            + +   E   L + +  + D   +L  W     +PCT+  VTC  D             
Sbjct: 6   PSQSLYREIHQLISFKDVLPDK-NLLPDWSSN-KNPCTFDGVTCRDDKVTSIDLSSKPLN 63

Query: 70  -------------------------------------RVTRLDLGNGKLSGNL--VPELG 90
                                                 +T LDL    LSG +  +  LG
Sbjct: 64  VGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLG 123

Query: 91  KLERLQYLELYMNNLAGQIPKELG-QLKSLISLDLYHNNLTGPIPPSL---SRLSNLKFL 146
               L++L +  N L        G +L SL  LDL  N+++G              LK L
Sbjct: 124 SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHL 183

Query: 147 RLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLEGP 204
            ++GNK++G +   +++  NL+ LDVS+N+    IP  G  S         N +L G 
Sbjct: 184 AISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGN-KLSGD 238

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  118 bits (298), Expect = 6e-31
 Identities = 54/138 (39%), Positives = 75/138 (54%), Gaps = 6/138 (4%)

Query: 72  TRLDLGNGKLSGNLVPE-LGKLERLQYLELYMNNLAGQIPKELGQLK-SLISLDLYHNNL 129
             L L +   SG L  + L K+  L+ L+L  N  +G++P+ L  L  SL++LDL  NN 
Sbjct: 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380

Query: 130 TGPIPPSLSR--LSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTA-GS 186
           +GPI P+L +   + L+ L L  N  TGKIP  L+    L  L +S N L GTIP++ GS
Sbjct: 381 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS 440

Query: 187 FSKFSEESFMNNPRLEGP 204
            SK  +     N  LEG 
Sbjct: 441 LSKLRDLKLWLN-MLEGE 457

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  117 bits (296), Expect = 1e-30
 Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 4/114 (3%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKEL-GQLKSLISLDLYHNNLT 130
             L++ + +  G + P    L+ LQYL L  N   G+IP  L G   +L  LDL  N+  
Sbjct: 250 KLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307

Query: 131 GPIPPSLSRLSNLKFLRLNGNKLTGKIPRE-LTKLGNLKILDVSNNDLCGTIPT 183
           G +PP     S L+ L L+ N  +G++P + L K+  LK+LD+S N+  G +P 
Sbjct: 308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  110 bits (277), Expect = 3e-28
 Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 4/131 (3%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
             L L    L+G +   L     L ++ L  N L G+IPK +G+L++L  L L +N+ +G
Sbjct: 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFS 191
            IP  L    +L +L LN N   G IP  + K        ++ N + G            
Sbjct: 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ----SGKIAANFIAGKRYVYIKNDGMK 584

Query: 192 EESFMNNPRLE 202
           +E       LE
Sbjct: 585 KECHGAGNLLE 595

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  105 bits (265), Expect = 1e-26
 Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 7/147 (4%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
             + L N +L+G +   +G+LE L  L+L  N+ +G IP ELG  +SLI LDL  N   G
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFS 191
            IP ++ + S      +  N + GK    +   G  K    + N L      +   ++ S
Sbjct: 553 TIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608

Query: 192 EESFMNNPRLEGPELMGFVRYDVGDCK 218
             +  N   +      G       +  
Sbjct: 609 TRNPCN---ITSRVYGGHTSPTFDNNG 632

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  104 bits (261), Expect = 4e-26
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 4/118 (3%)

Query: 74  LDLGNGKLSGNLVPELGKLERLQYLELYMN--NLAGQIPKELGQLKSLISLDLYHNNLTG 131
             +    ++G     +      +      N     G   ++L +L +    ++      G
Sbjct: 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSK 189
              P+     ++ FL ++ N L+G IP+E+  +  L IL++ +ND+ G+IP       
Sbjct: 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD--EVGD 678

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 97.0 bits (242), Expect = 1e-23
 Identities = 27/123 (21%), Positives = 41/123 (33%), Gaps = 1/123 (0%)

Query: 69  NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNN 128
                LDL    L             LQ L+L    +          L  L +L L  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 129 LTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFS 188
           +      + S LS+L+ L      L       +  L  LK L+V++N +  +      FS
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI-QSFKLPEYFS 146

Query: 189 KFS 191
             +
Sbjct: 147 NLT 149

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 95.1 bits (237), Expect = 6e-23
 Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 1/114 (0%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKE-LGQLKSLISLDLYHNNLT 130
             LD+ +             L  L+ L++  N+       +   +L++L  LDL    L 
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 131 GPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTA 184
              P + + LS+L+ L ++ N            L +L++LD S N +  +    
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 537

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 90.5 bits (225), Expect = 3e-21
 Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 2/113 (1%)

Query: 72  TRLDLGNGKLSGNLVPE-LGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLT 130
             L +       N +P+   +L  L +L+L    L    P     L SL  L++ HNN  
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 507

Query: 131 GPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKL-GNLKILDVSNNDLCGTIP 182
                    L++L+ L  + N +     +EL     +L  L+++ ND   T  
Sbjct: 508 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 85.5 bits (212), Expect = 1e-19
 Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 5/122 (4%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKE-LGQLKSLISLDLYHNNLT 130
             LDL    +   +      LE+L++L+   +NL           L++LI LD+ H +  
Sbjct: 376 KYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 131 GPIPPSLSRLSNLKFLRLNGNKLTGKI-PRELTKLGNLKILDVSNNDLCGTIPTAGSFSK 189
                  + LS+L+ L++ GN       P   T+L NL  LD+S   L    P   +F+ 
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP--TAFNS 492

Query: 190 FS 191
            S
Sbjct: 493 LS 494

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 77.4 bits (191), Expect = 8e-17
 Identities = 24/116 (20%), Positives = 43/116 (37%), Gaps = 6/116 (5%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAG-QIPKELGQLKSLISLDLYHNNLT 130
            +L      L+      +G L+ L+ L +  N +   ++P+    L +L  LDL  N + 
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 131 GPIPPSLSRLSNLKF----LRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIP 182
                 L  L  +      L L+ N +    P    ++  L  L + NN     + 
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVM 217

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 74.7 bits (184), Expect = 6e-16
 Identities = 28/117 (23%), Positives = 39/117 (33%), Gaps = 3/117 (2%)

Query: 69  NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNN 128
             +T LDL   +L          L  LQ L +  NN           L SL  LD   N+
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 529

Query: 129 LTGPIPPSLSRL-SNLKFLRLNGNKLTGKIPRE--LTKLGNLKILDVSNNDLCGTIP 182
           +       L    S+L FL L  N        +  L  + + + L V    +    P
Sbjct: 530 IMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATP 586

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 71.2 bits (175), Expect = 1e-14
 Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 3/105 (2%)

Query: 80  KLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLT--GPIPPSL 137
           +L      +   L+      L   +  G        L SL  LDL  N L+  G    S 
Sbjct: 310 ELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 138 SRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIP 182
              ++LK+L L+ N +   +      L  L+ LD  +++L     
Sbjct: 370 FGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE 413

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.0 bits (138), Expect = 7e-10
 Identities = 30/146 (20%), Positives = 41/146 (28%), Gaps = 28/146 (19%)

Query: 70  RVTRLDLGNGKLSGNLV-PELGKLERLQYLELYMNNL------AGQIPKELGQLKSLISL 122
            V RL LG  +  GNL   +   LE L  L +    L         I      L ++ S 
Sbjct: 228 EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287

Query: 123 DLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLT-------------------GKIPRELTK 163
            L    +        S     + L L   K                     G        
Sbjct: 288 SLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD 345

Query: 164 LGNLKILDVSNNDLCGTIPTAGSFSK 189
           L +L+ LD+S N L      + S   
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFG 371

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 22/141 (15%), Positives = 39/141 (27%), Gaps = 24/141 (17%)

Query: 71  VTRLDLGNGKLSGNLVPEL-GKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNL 129
           +    L       + + +L   L  +    L    +                L+L +   
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKF 316

Query: 130 T-------------------GPIPPSLSRLSNLKFLRLNGNKLT--GKIPRELTKLGNLK 168
                               G    S   L +L+FL L+ N L+  G   +      +LK
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 169 ILDVSNNDLCGTIPTAGSFSK 189
            LD+S N +           +
Sbjct: 377 YLDLSFNGVITMSSNFLGLEQ 397

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 54.6 bits (132), Expect = 5e-09
 Identities = 26/151 (17%), Positives = 41/151 (27%), Gaps = 23/151 (15%)

Query: 73  RLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKE-LGQLKSLISLDLYHNNLTG 131
            LDL    ++  + P   K  RL  L L  N  +  + K  +  L  L    L       
Sbjct: 181 SLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

Query: 132 PI---PPSLSRLSNLKFLRLNGNKLT------GKIPRELTKLGNLKILDVSNNDLCGTIP 182
                    S L  L  L +   +L         I      L N+    + +  +     
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299

Query: 183 TAG------------SFSKFSEESFMNNPRL 201
            +              F +F      +  RL
Sbjct: 300 FSYNFGWQHLELVNCKFGQFPTLKLKSLKRL 330

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 94.3 bits (235), Expect = 1e-22
 Identities = 29/114 (25%), Positives = 49/114 (42%)

Query: 71  VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLT 130
           +T L+L + +L         +  +L  L++  N ++   P+   +L  L  L+L HN L+
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86

Query: 131 GPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTA 184
                + +  +NL  L L  N +         K  NL  LD+S+N L  T    
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT 140

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 93.5 bits (233), Expect = 2e-22
 Identities = 31/121 (25%), Positives = 45/121 (37%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
           T LD+G   +S        KL  L+ L L  N L+    K      +L  L L  N++  
Sbjct: 52  TSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK 111

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFS 191
                  +  NL  L L+ N L+        +L NL+ L +SNN +             S
Sbjct: 112 IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANS 171

Query: 192 E 192
            
Sbjct: 172 S 172

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 89.3 bits (222), Expect = 6e-21
 Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 6/138 (4%)

Query: 70  RVTRLDLGNGKLSGNLVPELG---KLERLQYLELYMNNLAGQIPKELGQLK--SLISLDL 124
           R+  L L N +L  +L  +L        ++ L L  + L+         LK  +L  LDL
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255

Query: 125 YHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTA 184
            +NNL      S + L  L++  L  N +       L  L N++ L++  +    +I  A
Sbjct: 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA 315

Query: 185 GSFSKFSEESFMNNPRLE 202
            S  K  + SF     LE
Sbjct: 316 -SLPKIDDFSFQWLKCLE 332

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 87.4 bits (217), Expect = 3e-20
 Identities = 30/134 (22%), Positives = 56/134 (41%), Gaps = 13/134 (9%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIP-KELGQLKSLISLDLYHNNLT 130
             L+L   K+S         L  L+ L+L +N +  ++  +E   L+++  + L +N   
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443

Query: 131 GPIPPSLSRLSNLKFLRLNGNKLTG--KIPRELTKLGNLKILDVSNNDLCGTIPTAGSFS 188
                S + + +L+ L L    L      P     L NL ILD+SNN++          +
Sbjct: 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI----------A 493

Query: 189 KFSEESFMNNPRLE 202
             +++      +LE
Sbjct: 494 NINDDMLEGLEKLE 507

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 86.2 bits (214), Expect = 9e-20
 Identities = 34/137 (24%), Positives = 46/137 (33%), Gaps = 3/137 (2%)

Query: 68  DNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHN 127
            N + RL        G  +  L  L  L  L L  N       +    L  L  +DL  N
Sbjct: 513 HNNLARLW--KHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN 570

Query: 128 NLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPREL-TKLGNLKILDVSNNDLCGTIPTAGS 186
           NL        +   +LK L L  N +T    +       NL  LD+  N    T  +   
Sbjct: 571 NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAW 630

Query: 187 FSKFSEESFMNNPRLEG 203
           F  +  E+  N P L  
Sbjct: 631 FVNWINETHTNIPELSS 647

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 85.8 bits (213), Expect = 1e-19
 Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 5/118 (4%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELG--QLKSLISLDLYHNNL 129
             LDL +  LS   +    +LE LQ L L  N +     +EL      SL  L+L  N +
Sbjct: 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183

Query: 130 TGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELT---KLGNLKILDVSNNDLCGTIPTA 184
               P     +  L  L LN  +L   +  +L       +++ L +SN+ L  T  T 
Sbjct: 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 85.4 bits (212), Expect = 2e-19
 Identities = 32/132 (24%), Positives = 48/132 (36%), Gaps = 9/132 (6%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHN---- 127
           T LDL    L+         L +L+Y  L  NN+       L  L ++  L+L  +    
Sbjct: 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310

Query: 128 -----NLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIP 182
                +L      S   L  L+ L +  N + G      T L NLK L +SN+       
Sbjct: 311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL 370

Query: 183 TAGSFSKFSEES 194
           T  +F   +   
Sbjct: 371 TNETFVSLAHSP 382

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 80.4 bits (199), Expect = 7e-18
 Identities = 35/138 (25%), Positives = 48/138 (34%), Gaps = 10/138 (7%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNL--------AGQIPKELGQLKSLISLD 123
           T LDL N  ++      L  LE+L+ L+L  NNL         G     L  L  L  L+
Sbjct: 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542

Query: 124 LYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPT 183
           L  N            L  LK + L  N L            +LK L++  N +      
Sbjct: 543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602

Query: 184 A--GSFSKFSEESFMNNP 199
               +F   +E     NP
Sbjct: 603 VFGPAFRNLTELDMRFNP 620

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.9 bits (195), Expect = 3e-17
 Identities = 32/155 (20%), Positives = 45/155 (29%), Gaps = 24/155 (15%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAG--QIPKELGQLKSLISLDLYHNNL 129
             + L   K           +  LQ L L    L      P     L++L  LDL +NN+
Sbjct: 433 FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI 492

Query: 130 TGPIPPSLSRLSNLKFLRLNGNKLT--------GKIPRELTKLGNLKILDVSNNDLCGTI 181
                  L  L  L+ L L  N L         G     L  L +L IL++ +N      
Sbjct: 493 ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP 552

Query: 182 PTAGS--------------FSKFSEESFMNNPRLE 202
                               +      F N   L+
Sbjct: 553 VEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLK 587

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.1 bits (193), Expect = 5e-17
 Identities = 26/136 (19%), Positives = 52/136 (38%), Gaps = 15/136 (11%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELG----QLKSLISLDLYHN 127
             L++ +  + G        L  L+YL L  +  + +              L  L+L  N
Sbjct: 332 EHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN 391

Query: 128 NLTGPIPPSLSRLSNLKFLRLNGNKLTGKIP-RELTKLGNLKILDVSNNDLCGTIPTAGS 186
            ++     + S L +L+ L L  N++  ++  +E   L N+  + +S N           
Sbjct: 392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN----------K 441

Query: 187 FSKFSEESFMNNPRLE 202
           + + +  SF   P L+
Sbjct: 442 YLQLTRNSFALVPSLQ 457

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 69.3 bits (170), Expect = 6e-14
 Identities = 26/119 (21%), Positives = 41/119 (34%), Gaps = 6/119 (5%)

Query: 70  RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNL 129
            +  L+L +       V     L  L+ ++L +NNL            SL SL+L  N +
Sbjct: 537 HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 596

Query: 130 TGPIPPSLSR-LSNLKFLRLNGNKLTGKIP-----RELTKLGNLKILDVSNNDLCGTIP 182
           T            NL  L +  N                   +  I ++S++ LC T P
Sbjct: 597 TSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPP 655

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 92.4 bits (230), Expect = 6e-22
 Identities = 24/143 (16%), Positives = 47/143 (32%), Gaps = 11/143 (7%)

Query: 49  SWDPTLVDPCTWFH---VTCDADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNL 105
           +W+    +   W     V+ +++ RVT L L     SG +   +G+L  L+ L L  +  
Sbjct: 59  NWNFN-KELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGE 117

Query: 106 AGQ----IPKELGQLKSLISLDLYHNNLTGPIPPSLSRL--SNLKFLRLNGNKLTGKIPR 159
                   PK +    S         +          R   S+L    +N +     I +
Sbjct: 118 KVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK 177

Query: 160 ELTKLGNLKILDVSNNDLCGTIP 182
                     +   +N++   + 
Sbjct: 178 SSRITLKDTQIGQLSNNI-TFVS 199

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 90.5 bits (225), Expect = 2e-21
 Identities = 21/129 (16%), Positives = 46/129 (35%), Gaps = 14/129 (10%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
            +  +GN       + E  + E  +Y + Y          +   LK L  +++Y+     
Sbjct: 209 RQFYMGNSPFVAENICEAWENENSEYAQQY-----KTEDLKWDNLKDLTDVEVYNCPNLT 263

Query: 132 PIPPSLSRLSNLKFLRLNGNKLT--------GKIPRELTKLGNLKILDVSNNDLCGTIPT 183
            +P  L  L  ++ + +  N+           +   +      ++I+ +  N+L  T P 
Sbjct: 264 KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL-KTFPV 322

Query: 184 AGSFSKFSE 192
             S  K  +
Sbjct: 323 ETSLQKMKK 331

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 90.1 bits (224), Expect = 4e-21
 Identities = 13/148 (8%), Positives = 41/148 (27%), Gaps = 20/148 (13%)

Query: 70  RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNL 129
            + +  + +     ++        +   +    NN+   + K + +L  L    + ++  
Sbjct: 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPF 218

Query: 130 TGP-------------------IPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKIL 170
                                        L +L  + +       K+P  L  L  ++++
Sbjct: 219 VAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278

Query: 171 DVSNNDLCGTIPTAGSFSKFSEESFMNN 198
           +V+ N           +   ++      
Sbjct: 279 NVACNRGISGEQLKDDWQALADAPVGEK 306

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 89.7 bits (223), Expect = 5e-21
 Identities = 29/127 (22%), Positives = 50/127 (39%), Gaps = 7/127 (5%)

Query: 72  TRLDLGNGKL-SGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLT 130
             + +G   L +  +   L K+++L  LE   N L G++P   G    L SL+L +N +T
Sbjct: 308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT 366

Query: 131 GPIPPSLSRLSNLKFLRLNGNKLTGKIPR--ELTKLGNLKILDVSNNDLCGTIPTAGSFS 188
                       ++ L    NKL   IP   +   +  +  +D S N++        +F 
Sbjct: 367 EIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDG--KNFD 423

Query: 189 KFSEESF 195
                 F
Sbjct: 424 PLDPTPF 430

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 87.4 bits (217), Expect = 3e-20
 Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 15/134 (11%)

Query: 72  TRLDLGNGKLSGNLVPEL--GKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYH--- 126
           T +DL   KL+  L  +     L  L  ++L  N+ +   P +     +L    + +   
Sbjct: 491 TSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRD 548

Query: 127 ---NNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPT 183
              N      P  ++   +L  L++  N +   +  ++    N+ +LD+ +N       +
Sbjct: 549 AQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLS 605

Query: 184 AGSFSKFSEESFMN 197
                 + E     
Sbjct: 606 --YVCPYIEAGMYM 617

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 87.4 bits (217), Expect = 3e-20
 Identities = 20/137 (14%), Positives = 42/137 (30%), Gaps = 20/137 (14%)

Query: 72  TRLDLGNGKLSGNLVP---ELGKLERLQYLELYMNNLAG-------QIPKELGQLKSLIS 121
             L   + KL    +P   +   +  +  ++   N +          +     +  ++ S
Sbjct: 380 ENLSFAHNKLKY--IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437

Query: 122 LDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTG-------KIPRELTKLGNLKILDVSN 174
           ++L +N ++       S  S L  + L GN LT                   L  +D+  
Sbjct: 438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF 497

Query: 175 NDLCGTIPTAGSFSKFS 191
           N L   +      +   
Sbjct: 498 NKL-TKLSDDFRATTLP 513

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 84.3 bits (209), Expect = 3e-19
 Identities = 23/126 (18%), Positives = 46/126 (36%), Gaps = 18/126 (14%)

Query: 72  TRLDLGNGKLSG-------NLVPELGKLERLQYLELYMNNLAGQIPKEL--GQLKSLISL 122
           + ++L    L+        +          L  ++L  N L   +  +     L  L+ +
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGI 518

Query: 123 DLYHNNLTGPIPPSLSRLSNLKFLRLN------GNKLTGKIPRELTKLGNLKILDVSNND 176
           DL +N+ +   P      S LK   +       GN+   + P  +T   +L  L + +ND
Sbjct: 519 DLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577

Query: 177 LCGTIP 182
           +   + 
Sbjct: 578 I-RKVN 582

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 78.5 bits (194), Expect = 3e-17
 Identities = 13/110 (11%), Positives = 31/110 (28%), Gaps = 10/110 (9%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYM------NNLAGQIPKELGQLKSLISLDLY 125
             +DL     S     +      L+   +        N    + P+ +    SL  L + 
Sbjct: 516 VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574

Query: 126 HNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNN 175
            N++   +   +    N+  L +  N         +       +  +  +
Sbjct: 575 SNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.1 bits (146), Expect = 6e-11
 Identities = 9/81 (11%), Positives = 25/81 (30%), Gaps = 3/81 (3%)

Query: 74  LDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPI 133
            D    +        +     L  L++  N++  ++ +++    ++  LD+  N      
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI--TPNISVLDIKDNPNISID 603

Query: 134 PPSLSRLSNLKFLRLNGNKLT 154
              +          L  +K  
Sbjct: 604 LSYVCPYIEAGMYMLFYDKTQ 624

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 90.7 bits (225), Expect = 2e-21
 Identities = 17/118 (14%), Positives = 35/118 (29%), Gaps = 10/118 (8%)

Query: 81  LSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRL 140
            + +           +                   LK L  ++LY+      +P  L  L
Sbjct: 455 FANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514

Query: 141 SNLKFLRLNGNKLTG---------KIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSK 189
             L+ L +  N+            ++  +      ++I  +  N+L    P + S  K
Sbjct: 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL-EEFPASASLQK 571

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 81.1 bits (200), Expect = 4e-18
 Identities = 27/164 (16%), Positives = 58/164 (35%), Gaps = 28/164 (17%)

Query: 64  TCDADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELY------MNNLAGQIPKELGQLK 117
             D D R+   DL    ++ N  PE+  +++   + L       + N    I K + +L 
Sbjct: 391 FLDYDQRLNLSDLLQDAINRN--PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLT 448

Query: 118 SLISLDLYHNNLTGP-------------------IPPSLSRLSNLKFLRLNGNKLTGKIP 158
            L  +   ++  T                        S S L +L  + L       ++P
Sbjct: 449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP 508

Query: 159 RELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLE 202
             L  L  L+ L+++ N           +++ +++     P+++
Sbjct: 509 DFLYDLPELQSLNIACNRGISAAQLKADWTRLADD-EDTGPKIQ 551

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 79.5 bits (196), Expect = 2e-17
 Identities = 22/128 (17%), Positives = 46/128 (35%), Gaps = 18/128 (14%)

Query: 70  RVTRLDLGNGKLS-------GNLVPELGKLERLQYLELYMNNLAGQIPKEL--GQLKSLI 120
            ++ + L N  ++                   L  ++L  N L   +  +     L  L 
Sbjct: 698 PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLS 756

Query: 121 SLDLYHNNLTGPIPPSLSRLSNLKFLRL------NGNKLTGKIPRELTKLGNLKILDVSN 174
           ++D+ +N  +   P      S LK   +       GN++  + P  +T   +L  L + +
Sbjct: 757 NMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS 815

Query: 175 NDLCGTIP 182
           ND+   + 
Sbjct: 816 NDI-RKVD 822

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 78.4 bits (193), Expect = 4e-17
 Identities = 17/139 (12%), Positives = 44/139 (31%), Gaps = 20/139 (14%)

Query: 69  NRVTRLDLGNGKLSGNLVP---ELGKLERLQYLELYMNNLAGQIPKELG------QLKSL 119
           ++V  L   + KL    +P       +  +  ++   N + G   + +       +  + 
Sbjct: 619 DQVEGLGFSHNKLKY--IPNIFNAKSVYVMGSVDFSYNKI-GSEGRNISCSMDDYKGINA 675

Query: 120 ISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLT-------GKIPRELTKLGNLKILDV 172
            ++ L +N +        +  S +  + L+ N +T                   L  +D+
Sbjct: 676 STVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDL 735

Query: 173 SNNDLCGTIPTAGSFSKFS 191
             N L  ++      +   
Sbjct: 736 RFNKL-TSLSDDFRATTLP 753

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 75.3 bits (185), Expect = 4e-16
 Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 12/122 (9%)

Query: 72  TRLDLGNGKLSGNLVPE---LGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNN 128
               +G   L     P    L K+ +L  L+   N +  +  +  G    L  L L +N 
Sbjct: 551 QIFYMGYNNLEE--FPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQ 606

Query: 129 LTGPIPPSL-SRLSNLKFLRLNGNKLTGKIPR--ELTKLGNLKILDVSNNDLCGTIPTAG 185
           +   IP    +    ++ L  + NKL   IP       +  +  +D S N +        
Sbjct: 607 IEE-IPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS 664

Query: 186 SF 187
             
Sbjct: 665 CS 666

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 72.2 bits (177), Expect = 6e-15
 Identities = 20/142 (14%), Positives = 43/142 (30%), Gaps = 3/142 (2%)

Query: 39  AVKDPQGVLQSWDPTLVDPCTWFHVTCDADNRVTRLDLGNGKLSGNLVP--ELGKLERLQ 96
            +KD + +   W+        ++  T +        +           P  +L    R+ 
Sbjct: 267 YIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVT 326

Query: 97  YLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGK 156
            L L      G++P  +GQL  L  L    ++ T                    +++   
Sbjct: 327 GLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMH 386

Query: 157 IPRE-LTKLGNLKILDVSNNDL 177
             +  L     L + D+  + +
Sbjct: 387 YKKMFLDYDQRLNLSDLLQDAI 408

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 65.7 bits (160), Expect = 8e-13
 Identities = 18/118 (15%), Positives = 37/118 (31%), Gaps = 15/118 (12%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYM------NNLAGQIPKELGQLKSLISLDLY 125
           + +D+     S     +     +L+   +        N +  Q P  +    SLI L + 
Sbjct: 756 SNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG 814

Query: 126 HNNLTGPIPPSLSRLSNLKFLRLNGNKLT----GKIPRELTKLGNLKILDVSNNDLCG 179
            N++   +   L     L  L +  N         +   +     + + D    D+ G
Sbjct: 815 SNDIRK-VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYD-KTQDIRG 868

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 62.6 bits (152), Expect = 1e-11
 Identities = 19/134 (14%), Positives = 41/134 (30%), Gaps = 21/134 (15%)

Query: 68  DNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHN 127
           + R  R+ +   K+  +    L   + L    +  N     I K+         +    N
Sbjct: 377 EERKHRIRMHYKKMFLDYDQRLNLSD-LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTN 435

Query: 128 NLTGPIPPSLSRLSNLKFLRLNGNKLTG-------------------KIPRELTKLGNLK 168
            +T  I  ++ RL+ L+ +    +  T                          + L +L 
Sbjct: 436 RITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLT 494

Query: 169 ILDVSNNDLCGTIP 182
            +++ N      +P
Sbjct: 495 DVELYNCPNMTQLP 508

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.4 bits (110), Expect = 3e-06
 Identities = 13/81 (16%), Positives = 26/81 (32%)

Query: 121 SLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGT 180
           + +   +         L     +  L L G    G++P  + +L  LK+L    +    +
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 181 IPTAGSFSKFSEESFMNNPRL 201
               G      + S     R+
Sbjct: 363 GRLFGDEELTPDMSEERKHRI 383

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 83.1 bits (206), Expect = 3e-19
 Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 1/107 (0%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
             L + N  LS  L P +  L +L+ L+L         P   G    L  L L   +   
Sbjct: 209 KSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLC 178
            +P  + RL+ L+ L L G     ++P  + +L    I+ V  +   
Sbjct: 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 80.8 bits (200), Expect = 2e-18
 Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 4/112 (3%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
             L L    +  +L   +  L+ L+ L++  + L+  +   +  L  L  LDL       
Sbjct: 186 QSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALR 243

Query: 132 PIPPSLSRLSNLKFLRL-NGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIP 182
             PP     + LK L L + + L   +P ++ +L  L+ LD+        +P
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLP 294

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 76.5 bits (189), Expect = 7e-17
 Identities = 27/115 (23%), Positives = 42/115 (36%), Gaps = 12/115 (10%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
             + +    L   L   + +   L+ L L  N L   +P  +  L  L  L +       
Sbjct: 107 QHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELT 164

Query: 132 PIPPSL---------SRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
            +P  L           L NL+ LRL    +   +P  +  L NLK L + N+ L
Sbjct: 165 ELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPL 218

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 76.5 bits (189), Expect = 8e-17
 Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 5/112 (4%)

Query: 73  RLDLGNGKLSGNLVPELGKL--ERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLT 130
           +++   G+        L          LEL    L  Q P +  +L  L  + +    L 
Sbjct: 59  QIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM 117

Query: 131 GPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIP 182
             +P ++ + + L+ L L  N L   +P  +  L  L+ L +        +P
Sbjct: 118 E-LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELP 167

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 63.4 bits (155), Expect = 3e-12
 Identities = 17/94 (18%), Positives = 30/94 (31%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
             LDL       N  P  G    L+ L L   +    +P ++ +L  L  LDL       
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLG 165
            +P  +++L     + +  +              
Sbjct: 292 RLPSLIAQLPANCIILVPPHLQAQLDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.9 bits (107), Expect = 6e-06
 Identities = 13/105 (12%), Positives = 25/105 (23%), Gaps = 24/105 (22%)

Query: 95  LQYLELYMNNLAGQIPKELGQLKSLISLD--------------------LYHNNLTGPIP 134
            + L    +         L Q +   + D                         L     
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKA-TA 72

Query: 135 PSLSRLS--NLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
             L   +      L L    L  + P +  +L +L+ + +    L
Sbjct: 73  DLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL 116

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 82.4 bits (204), Expect = 2e-18
 Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 2/122 (1%)

Query: 69  NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNN 128
             V  ++L                  LQ L+L   +L+ ++P  L  L +L  L L  N 
Sbjct: 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANK 312

Query: 129 LTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRE-LTKLGNLKILDVSNNDLCGTIPTAGSF 187
                  S S   +L  L + GN    ++    L  L NL+ LD+S++D+  +       
Sbjct: 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372

Query: 188 SK 189
             
Sbjct: 373 RN 374

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 82.4 bits (204), Expect = 2e-18
 Identities = 22/132 (16%), Positives = 37/132 (28%), Gaps = 10/132 (7%)

Query: 71  VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLT 130
              L+     L         +L  L +L+L    +             L +L L  N L 
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94

Query: 131 GPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKF 190
                +LS    LK L      ++      L     L+ L + +N +          S  
Sbjct: 95  FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI----------SSI 144

Query: 191 SEESFMNNPRLE 202
                    +L+
Sbjct: 145 KLPKGFPTEKLK 156

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 82.0 bits (203), Expect = 2e-18
 Identities = 28/135 (20%), Positives = 42/135 (31%), Gaps = 10/135 (7%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
           T LDL   ++            RL  L L  N L       L   K+L  L      ++ 
Sbjct: 60  TFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS 119

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFS 191
                L     L+ L L  N ++     +      LK+LD  NN          +    S
Sbjct: 120 IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN----------AIHYLS 169

Query: 192 EESFMNNPRLEGPEL 206
           +E   +  +     L
Sbjct: 170 KEDMSSLQQATNLSL 184

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 81.2 bits (201), Expect = 3e-18
 Identities = 27/129 (20%), Positives = 46/129 (35%), Gaps = 2/129 (1%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
             L L    L       L   + L++L      ++      L   K+L SL L  N+++ 
Sbjct: 84  DTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS 143

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKI--LDVSNNDLCGTIPTAGSFSK 189
              P       LK L    N +      +++ L       L+++ ND+ G  P A   + 
Sbjct: 144 IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAV 203

Query: 190 FSEESFMNN 198
           F   +F   
Sbjct: 204 FQSLNFGGT 212

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 72.4 bits (178), Expect = 4e-15
 Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 4/109 (3%)

Query: 72  TRLDLGNGKLSGN---LVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNN 128
             L+L               L  L RL+ L L   +L+         LK +  +DL HN 
Sbjct: 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511

Query: 129 LTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
           LT     +LS L  + +L L  N ++  +P  L  L   + +++  N L
Sbjct: 512 LTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 72.4 bits (178), Expect = 5e-15
 Identities = 29/135 (21%), Positives = 46/135 (34%), Gaps = 14/135 (10%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKE-LGQLKSLISLDLYHNNLT 130
             L+L   +          +  +L+ L+L    L  +  +     L  L  L+L H+ L 
Sbjct: 379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD 438

Query: 131 GPIPPSLSRLSNLKFLRLNGNKLTGKI---PRELTKLGNLKILDVSNNDLCGTIPTAGSF 187
                    L  L+ L L GN            L  LG L+IL +S  DL          
Sbjct: 439 ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL---------- 488

Query: 188 SKFSEESFMNNPRLE 202
           S   + +F +   + 
Sbjct: 489 SSIDQHAFTSLKMMN 503

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.0 bits (172), Expect = 3e-14
 Identities = 25/116 (21%), Positives = 49/116 (42%), Gaps = 4/116 (3%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKE---LGQLKSLISLDLYHNN 128
             L+L +  L  +       L  LQ+L L  N+      ++   L  L  L  L L   +
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487

Query: 129 LTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTA 184
           L+     + + L  +  + L+ N+LT      L+ L  +  L++++N +   +P+ 
Sbjct: 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSL 542

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 69.7 bits (171), Expect = 3e-14
 Identities = 32/137 (23%), Positives = 53/137 (38%), Gaps = 14/137 (10%)

Query: 70  RVTRLDLGNGKLSGNLVPE-LGKLERLQYLELYMNNLA--GQIPKELGQLKSLISLDLYH 126
            +T L +        L    L  LE L+ L+L  +++        +L  L  L SL+L +
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385

Query: 127 NNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRE-LTKLGNLKILDVSNNDLCGTIPTAG 185
           N        +      L+ L L   +L  K  +     L  LK+L++S++ L        
Sbjct: 386 NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL-------- 437

Query: 186 SFSKFSEESFMNNPRLE 202
                SE+ F   P L+
Sbjct: 438 --DISSEQLFDGLPALQ 452

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 64.7 bits (158), Expect = 2e-12
 Identities = 25/141 (17%), Positives = 53/141 (37%), Gaps = 15/141 (10%)

Query: 70  RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSL--ISLDLYHN 127
            +  L LG+  +S   +P+    E+L+ L+   N +     +++  L+    +SL+L  N
Sbjct: 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189

Query: 128 NLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPREL--TKLGNLKILDVSNNDLCGTIPTAG 185
           ++ G I P     +  + L   G +    I + L  + + +L +    + D         
Sbjct: 190 DIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD-------- 240

Query: 186 SFSKFSEESFMNNPRLEGPEL 206
                S   F     +    +
Sbjct: 241 --EDISPAVFEGLCEMSVESI 259

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.9 bits (156), Expect = 3e-12
 Identities = 22/100 (22%), Positives = 32/100 (32%), Gaps = 13/100 (13%)

Query: 103 NNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELT 162
             L  +IP  L    S   L+   N L      + SRL NL FL L   ++         
Sbjct: 22  LGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQ 78

Query: 163 KLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLE 202
               L  L ++ N L             +E +      L+
Sbjct: 79  SQHRLDTLVLTANPL----------IFMAETALSGPKALK 108

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.8 bits (148), Expect = 3e-11
 Identities = 18/112 (16%), Positives = 33/112 (29%), Gaps = 5/112 (4%)

Query: 70  RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELG--QLKSLISLDLYHN 127
               L+L    ++G + P        Q L          I K L    ++SL        
Sbjct: 180 TNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238

Query: 128 NLTGPIPPSLSRLS--NLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
           +     P     L   +++ + L  +               L+ LD++   L
Sbjct: 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL 290

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 57.7 bits (140), Expect = 4e-10
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 1/86 (1%)

Query: 70  RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNL 129
           R+  L L    LS         L+ + +++L  N L     + L  LK +  L+L  N++
Sbjct: 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHI 535

Query: 130 TGPIPPSLSRLSNLKFLRLNGNKLTG 155
           +  +P  L  LS  + + L  N L  
Sbjct: 536 SIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.2 bits (123), Expect = 6e-08
 Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 13/82 (15%)

Query: 121 SLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGT 180
           + +  +  L   IP +L   ++ + L  + N L        ++L NL  LD++   +   
Sbjct: 16  TYNCENLGLNE-IPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI--- 69

Query: 181 IPTAGSFSKFSEESFMNNPRLE 202
                      E++F +  RL+
Sbjct: 70  -------YWIHEDTFQSQHRLD 84

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 82.4 bits (204), Expect = 2e-18
 Identities = 29/121 (23%), Positives = 46/121 (38%), Gaps = 1/121 (0%)

Query: 71  VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLT 130
              +DL    L             LQ+L+L    +     K    L  L +L L  N + 
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93

Query: 131 GPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKF 190
              P S S L++L+ L     KL       + +L  LK L+V++N +  +      FS  
Sbjct: 94  SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFI-HSCKLPAYFSNL 152

Query: 191 S 191
           +
Sbjct: 153 T 153

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 80.5 bits (199), Expect = 7e-18
 Identities = 23/117 (19%), Positives = 36/117 (30%), Gaps = 1/117 (0%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKE-LGQLKSLISLDLYHNNLT 130
             LD+       +       L  L  L++  N+              +L  LDL    L 
Sbjct: 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486

Query: 131 GPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSF 187
                    L  L+ L ++ N L         +L +L  LD S N +  +      F
Sbjct: 487 QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHF 543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 77.4 bits (191), Expect = 9e-17
 Identities = 20/107 (18%), Positives = 37/107 (34%), Gaps = 1/107 (0%)

Query: 72  TRLDLGNGKLSGNLVPE-LGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLT 130
             L +       N +         L +L+L    L          L  L  L++ HNNL 
Sbjct: 451 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 510

Query: 131 GPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
                  ++L +L  L  + N++            +L   +++NN +
Sbjct: 511 FLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 72.8 bits (179), Expect = 3e-15
 Identities = 29/131 (22%), Positives = 44/131 (33%), Gaps = 13/131 (9%)

Query: 74  LDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKE-LGQLKSLISLDLYHNNLTGP 132
           LDL        +      LE LQ+L+   + L           L+ L+ LD+ + N    
Sbjct: 381 LDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID 439

Query: 133 IPPSLSRLSNLKFLRLNGNKLTGKIPRE-LTKLGNLKILDVSNNDLCGTIPTAGSFSKFS 191
                  L++L  L++ GN               NL  LD+S   L           + S
Sbjct: 440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL----------EQIS 489

Query: 192 EESFMNNPRLE 202
              F    RL+
Sbjct: 490 WGVFDTLHRLQ 500

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 66.2 bits (162), Expect = 5e-13
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 13/100 (13%)

Query: 103 NNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELT 162
             L+ ++P ++    S  ++DL  N L      S S  S L++L L+  ++     +   
Sbjct: 21  QKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWH 77

Query: 163 KLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLE 202
            L +L  L ++ N +            FS  SF     LE
Sbjct: 78  GLHHLSNLILTGNPI----------QSFSPGSFSGLTSLE 107

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.8 bits (161), Expect = 7e-13
 Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 6/116 (5%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAG-QIPKELGQLKSLISLDLYHNNLT 130
             L     KL+      +G+L  L+ L +  N +   ++P     L +L+ +DL +N + 
Sbjct: 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166

Query: 131 GPIPPSLSRLSNLKF----LRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIP 182
                 L  L         L ++ N +   I  +  +   L  L +  N     I 
Sbjct: 167 TITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIM 221

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.0 bits (151), Expect = 1e-11
 Identities = 30/123 (24%), Positives = 46/123 (37%), Gaps = 9/123 (7%)

Query: 68  DNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHN 127
             +   L +   +L          L  L+ L L MN     I  +   L SL  LDL  N
Sbjct: 306 HFKWQSLSIIRCQLKQF---PTLDLPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRN 360

Query: 128 NLTGPIPPSLSRL--SNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAG 185
            L+     S S L  ++L+ L L+ N     +      L  L+ LD  ++ L   +    
Sbjct: 361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTL-KRVTEFS 418

Query: 186 SFS 188
           +F 
Sbjct: 419 AFL 421

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.0 bits (133), Expect = 4e-09
 Identities = 18/129 (13%), Positives = 38/129 (29%), Gaps = 13/129 (10%)

Query: 59  TWFHVTCDADNRVTRLDLGNGKLSGNLVPELGK-LERLQYLELYMNNLAG---------Q 108
            +         ++  L L     S N++    + L  L    L +               
Sbjct: 194 DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPS 253

Query: 109 IPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLK 168
           I + L  + ++    L + N           L+N+  + L G  +      ++ K    +
Sbjct: 254 IMEGLCDV-TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQ 310

Query: 169 ILDVSNNDL 177
            L +    L
Sbjct: 311 SLSIIRCQL 319

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 13/96 (13%), Positives = 34/96 (35%), Gaps = 14/96 (14%)

Query: 107 GQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGN 166
           G +   +  + ++ +       L+  +P  +   S+ K + L+ N L        +    
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLSK-VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSE 57

Query: 167 LKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLE 202
           L+ LD+S  ++              ++++     L 
Sbjct: 58  LQWLDLSRCEI----------ETIEDKAWHGLHHLS 83

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 77.6 bits (192), Expect = 4e-17
 Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 7/111 (6%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
             L+L   +++   +  L  L +L  L +  N +       L  L +L  L L  +N++ 
Sbjct: 69  EYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISD 124

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIP 182
             P  L+ L+ +  L L  N     +   L+ +  L  L V+ + +    P
Sbjct: 125 ISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP 172

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 75.7 bits (187), Expect = 2e-16
 Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 6/106 (5%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
           T L++G  ++S   +  +  L +L+ L +  N ++      L  L  L SL L +N L  
Sbjct: 246 TWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGN 301

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
                +  L+NL  L L+ N +T   P  L  L  +   D +N  +
Sbjct: 302 EDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 75.3 bits (186), Expect = 2e-16
 Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 8/121 (6%)

Query: 69  NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNN 128
             +T+L +   K++   +  +  L  L+YL L  N +    P  L  L  L +L +  N 
Sbjct: 44  ESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNK 99

Query: 129 LTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFS 188
           +T     +L  L+NL+ L LN + ++   P  L  L  +  L++  N     +    + +
Sbjct: 100 IT--DISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMT 155

Query: 189 K 189
            
Sbjct: 156 G 156

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 75.3 bits (186), Expect = 3e-16
 Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 7/106 (6%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
             L L    +S   +  L  L ++  L L  N+        L  +  L  L +  + +  
Sbjct: 113 RELYLNEDNISD--ISPLANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKD 169

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
             P  ++ L++L  L LN N++    P  L  L +L       N +
Sbjct: 170 VTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQI 211

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 73.3 bits (181), Expect = 1e-15
 Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 8/106 (7%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
             L +   K+    V  +  L  L  L L  N +    P  L  L SL     Y N +T 
Sbjct: 158 NYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD 213

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
             P  ++ ++ L  L++  NK+T   P  L  L  L  L++  N +
Sbjct: 214 ITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI 255

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 72.6 bits (179), Expect = 2e-15
 Identities = 22/113 (19%), Positives = 44/113 (38%), Gaps = 8/113 (7%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
                   +++   +  +  + RL  L++  N +    P  L  L  L  L++  N ++ 
Sbjct: 202 HYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD 257

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTA 184
               ++  L+ LK L +  N+++      L  L  L  L ++NN L       
Sbjct: 258 --INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEV 306

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 71.4 bits (176), Expect = 5e-15
 Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 8/107 (7%)

Query: 71  VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLT 130
             R  L    ++   V    +LE +  L +    +A    + +  L +L  L+L  N +T
Sbjct: 24  GIRAVLQKASVTD--VVTQEELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGNQIT 79

Query: 131 GPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
              P  LS L  L  L +  NK+T      L  L NL+ L ++ +++
Sbjct: 80  DISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNI 122

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 66.4 bits (163), Expect = 3e-13
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
             L++G+ ++S   +  L  L +L  L L  N L  +  + +G L +L +L L  N++T 
Sbjct: 268 KMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325

Query: 132 PIPPSLSRLSNLKFLRLNGNKLT 154
             P  L+ LS +         + 
Sbjct: 326 IRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 66.0 bits (162), Expect = 5e-13
 Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 8/106 (7%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
             L      +  N +     L       L   ++   +     +L+S+  L +    +  
Sbjct: 3   ATLATLPAPI--NQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS 58

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
                +  L+NL++L LNGN++T   P  L+ L  L  L +  N +
Sbjct: 59  --IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI 100

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 53.3 bits (129), Expect = 9e-09
 Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 6/83 (7%)

Query: 95  LQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLT 154
              L      +    P     L   I   L   ++T  +      L ++  L + G K+ 
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 155 GKIPRELTKLGNLKILDVSNNDL 177
             I   +  L NL+ L+++ N +
Sbjct: 58  -SIQ-GIEYLTNLEYLNLNGNQI 78

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 73.8 bits (182), Expect = 1e-16
 Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 3/104 (2%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
            RL +    ++ + +P L  L  L  L++  +     I  ++  L  + S+DL +N    
Sbjct: 91  ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNN 175
            I P L  L  LK L +  + +       +     L  L   + 
Sbjct: 151 DIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 70.8 bits (174), Expect = 2e-15
 Identities = 21/113 (18%), Positives = 47/113 (41%), Gaps = 4/113 (3%)

Query: 69  NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNN 128
           N +T + L N  ++   +  +     ++ L +   +        +  L +L  L +   +
Sbjct: 44  NSLTYITLANINVTD--LTGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKD 99

Query: 129 LTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTI 181
           +T    P+LS L++L  L ++ +     I  ++  L  +  +D+S N     I
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 59.2 bits (144), Expect = 4e-11
 Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 6/109 (5%)

Query: 78  NGKLSGNLVPEL--GKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPP 135
           NG L  +    +   ++  L Y+ L   N+       +    ++  L + + + T   P 
Sbjct: 27  NGLLGQSSTANITEAQMNSLTYITLANINV--TDLTGIEYAHNIKDLTINNIHATNYNP- 83

Query: 136 SLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTA 184
            +S LSNL+ LR+ G  +T      L+ L +L +LD+S++    +I T 
Sbjct: 84  -ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK 131

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.5 bits (137), Expect = 3e-10
 Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 3/84 (3%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
           T LD+ +     +++ ++  L ++  ++L  N     I   L  L  L SL++  + +  
Sbjct: 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHD 173

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTG 155
                +     L  L      + G
Sbjct: 174 YRG--IEDFPKLNQLYAFSQTIGG 195

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 75.8 bits (187), Expect = 1e-16
 Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 5/107 (4%)

Query: 72  TRLDLGNGKLSG-NLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLT 130
             LDL   ++   N        + L++L L  N +   +  ++     L +LDL  N L 
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA 204

Query: 131 GPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
             + P     + + ++ L  NKL   I + L    NL+  D+  N  
Sbjct: 205 F-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 74.6 bits (184), Expect = 4e-16
 Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 7/109 (6%)

Query: 69  NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNN 128
           NR     + +  L   L         ++ L+L  N L+     +L     L  L+L  N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 129 LTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
           L       L  LS L+ L LN N +      EL    +++ L  +NN++
Sbjct: 70  LYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI 111

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 69.6 bits (171), Expect = 2e-14
 Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 2/86 (2%)

Query: 92  LERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGN 151
             R +  ++  ++L   +        ++  LDL  N L+      L+  + L+ L L+ N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 152 KLTGKIPRELTKLGNLKILDVSNNDL 177
            L  +   +L  L  L+ LD++NN +
Sbjct: 69  VLY-ETL-DLESLSTLRTLDLNNNYV 92

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 66.6 bits (163), Expect = 3e-13
 Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 4/98 (4%)

Query: 81  LSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRL 140
           L+ N V EL     ++ L    NN++ ++    GQ     ++ L +N +T          
Sbjct: 87  LNNNYVQELLVGPSIETLHAANNNIS-RVSCSRGQ--GKKNIYLANNKITMLRDLDEGCR 143

Query: 141 SNLKFLRLNGNKLTG-KIPRELTKLGNLKILDVSNNDL 177
           S +++L L  N++              L+ L++  N +
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 57.3 bits (139), Expect = 4e-10
 Identities = 15/69 (21%), Positives = 29/69 (42%)

Query: 109 IPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLK 168
           I +            +  ++L   +        N+K L L+GN L+     +L     L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 169 ILDVSNNDL 177
           +L++S+N L
Sbjct: 62  LLNLSSNVL 70

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 54.2 bits (131), Expect = 5e-09
 Identities = 24/112 (21%), Positives = 42/112 (37%), Gaps = 6/112 (5%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLT- 130
             LDL + KL+  + PE      + ++ L  N L   I K L   ++L   DL  N    
Sbjct: 194 KTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC 251

Query: 131 GPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIP 182
           G +    S+   ++ +     K   K+  +  +   +  L       C  +P
Sbjct: 252 GTLRDFFSKNQRVQTVAKQTVK---KLTGQNEEECTVPTLGHYGAYCCEDLP 300

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 76.3 bits (188), Expect = 2e-16
 Identities = 27/121 (22%), Positives = 41/121 (33%), Gaps = 1/121 (0%)

Query: 71  VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLT 130
              LDL    L             LQ L+L    +          L  L +L L  N + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 131 GPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKF 190
                + S LS+L+ L      L       +  L  LK L+V++N +  +      FS  
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI-QSFKLPEYFSNL 148

Query: 191 S 191
           +
Sbjct: 149 T 149

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 72.4 bits (178), Expect = 4e-15
 Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 15/134 (11%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKE--LGQLKSLISLDLYHNNL 129
             LDL    +   +      LE+L++L+   +NL  Q+ +      L++LI LD+ H + 
Sbjct: 376 KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHT 433

Query: 130 TGPIPPSLSRLSNLKFLRLNGNKLTGKIPRE-LTKLGNLKILDVSNNDLCGTIPTAGSFS 188
                   + LS+L+ L++ GN        +  T+L NL  LD+S   L           
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL----------E 483

Query: 189 KFSEESFMNNPRLE 202
           + S  +F +   L+
Sbjct: 484 QLSPTAFNSLSSLQ 497

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 67.0 bits (164), Expect = 2e-13
 Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 1/120 (0%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKE-LGQLKSLISLDLYHNNLT 130
             LD+ +             L  L+ L++  N+       +   +L++L  LDL    L 
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 131 GPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKF 190
              P + + LS+L+ L +  N+L         +L +L+ + +  N    + P     S++
Sbjct: 484 QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 63.2 bits (154), Expect = 7e-12
 Identities = 25/116 (21%), Positives = 42/116 (36%), Gaps = 6/116 (5%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLA-GQIPKELGQLKSLISLDLYHNNLT 130
            +L      L+      +G L+ L+ L +  N +   ++P+    L +L  LDL  N + 
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 131 GPIPPSLSRLSNLKF----LRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIP 182
                 L  L  +      L L+ N +   I     K   L  L + NN     + 
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVM 217

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 61.7 bits (150), Expect = 2e-11
 Identities = 33/120 (27%), Positives = 49/120 (40%), Gaps = 9/120 (7%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLT- 130
             L+L N        P L KL+ L+ L    N   G    E+  L SL  LDL  N L+ 
Sbjct: 307 QHLELVN--CKFGQFPTL-KLKSLKRLTFTSNKG-GNAFSEVD-LPSLEFLDLSRNGLSF 361

Query: 131 -GPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSK 189
            G    S    ++LK+L L+ N +   +      L  L+ LD  +++L   +     F  
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFLS 419

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 13/100 (13%)

Query: 103 NNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELT 162
            N   +IP  L    S  +LDL  N L      S      L+ L L+  ++         
Sbjct: 17  LNFY-KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ 73

Query: 163 KLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLE 202
            L +L  L ++ N +             +  +F     L+
Sbjct: 74  SLSHLSTLILTGNPI----------QSLALGAFSGLSSLQ 103

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 24/133 (18%), Positives = 42/133 (31%), Gaps = 16/133 (12%)

Query: 71  VTRLDLGNGKLSGNLVPEL-GKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNL 129
           +    L       + + +L   L  +    L    +  ++  +         L+L +   
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVK-DFSYNFGWQHLELVNCKF 316

Query: 130 TGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSK 189
               P    +L +LK L    NK           L +L+ LD+S N L        SF  
Sbjct: 317 GQ-FPTL--KLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGL--------SFKG 363

Query: 190 FSEESFMNNPRLE 202
              +S      L+
Sbjct: 364 CCSQSDFGTTSLK 376

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 76.0 bits (187), Expect = 3e-16
 Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 7/109 (6%)

Query: 69  NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNN 128
           NR     + +  L   L         ++ L+L  N L+     +L     L  L+L  N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 129 LTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
           L       L  LS L+ L LN N +      EL    +++ L  +NN++
Sbjct: 70  LYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI 111

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 72.6 bits (178), Expect = 3e-15
 Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 6/113 (5%)

Query: 72  TRLDLGNGKLSG-NLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLT 130
             LDL   ++   N        + L++L L  N +   +  ++     L +LDL  N L 
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA 204

Query: 131 GPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL-CGTIP 182
             + P     + + ++ L  NKL   I + L    NL+  D+  N   CGT+ 
Sbjct: 205 F-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLR 255

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 70.6 bits (173), Expect = 2e-14
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 2/86 (2%)

Query: 92  LERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGN 151
             R +  ++  ++L   +        ++  LDL  N L+      L+  + L+ L L+ N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 152 KLTGKIPRELTKLGNLKILDVSNNDL 177
            L      +L  L  L+ LD++NN +
Sbjct: 69  VLYE--TLDLESLSTLRTLDLNNNYV 92

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 64.9 bits (158), Expect = 1e-12
 Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 4/98 (4%)

Query: 81  LSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRL 140
           L+ N V EL     ++ L    NN++ ++    GQ     ++ L +N +T          
Sbjct: 87  LNNNYVQELLVGPSIETLHAANNNIS-RVSCSRGQ--GKKNIYLANNKITMLRDLDEGCR 143

Query: 141 SNLKFLRLNGNKLTG-KIPRELTKLGNLKILDVSNNDL 177
           S +++L L  N++              L+ L++  N +
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 56.4 bits (136), Expect = 1e-09
 Identities = 15/69 (21%), Positives = 29/69 (42%)

Query: 109 IPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLK 168
           I +            +  ++L   +        N+K L L+GN L+     +L     L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 169 ILDVSNNDL 177
           +L++S+N L
Sbjct: 62  LLNLSSNVL 70

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 55.6 bits (134), Expect = 2e-09
 Identities = 18/106 (16%), Positives = 32/106 (30%), Gaps = 3/106 (2%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
             LDL + KL+  + PE      + ++ L  N L   I K L   ++L   DL  N    
Sbjct: 194 KTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC 251

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
                     N +   +    +     +   +     +        
Sbjct: 252 GTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCC 296

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 13/99 (13%), Positives = 22/99 (22%), Gaps = 4/99 (4%)

Query: 74  LDLGNGKLSGNLVPELGKLERLQYLELYMNNLAG----QIPKELGQLKSLISLDLYHNNL 129
              G         P   +L  L+  E  + +  G    ++  E         +D      
Sbjct: 289 GHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQY 348

Query: 130 TGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLK 168
              I     R      L      L  ++         L 
Sbjct: 349 RTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELD 387

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 75.4 bits (186), Expect = 4e-16
 Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 8/106 (7%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
            RLD+ + K+S   +  L KL  L+ L    N ++   P  LG L +L  L L  N L  
Sbjct: 180 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD 235

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
               +L+ L+NL  L L  N+++   P  L+ L  L  L +  N +
Sbjct: 236 I--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 277

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 74.6 bits (184), Expect = 7e-16
 Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 8/134 (5%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
           T L+L   +L    +  +  L+ L YL LY NN++   P  +  L  L  L  Y+N ++ 
Sbjct: 290 TNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD 345

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFS 191
               SL+ L+N+ +L    N+++   P  L  L  +  L +++           +     
Sbjct: 346 V--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIP 401

Query: 192 EESFMNNPRLEGPE 205
                    L  P 
Sbjct: 402 NTVKNVTGALIAPA 415

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 73.5 bits (181), Expect = 1e-15
 Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 8/112 (7%)

Query: 71  VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLT 130
             +  LG   ++         L+++  L+     +  +    +  L +L  ++  +N LT
Sbjct: 26  KMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLT 81

Query: 131 GPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIP 182
              P  L  L+ L  + +N N++    P  L  L NL  L + NN +    P
Sbjct: 82  DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP 129

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 73.1 bits (180), Expect = 2e-15
 Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 8/111 (7%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
           T L LG  ++S   +  L  L  L  LEL  N L       +  LK+L  L LY NN++ 
Sbjct: 268 TELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD 323

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIP 182
             P  +S L+ L+ L    NK++      L  L N+  L   +N +    P
Sbjct: 324 ISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP 370

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 72.3 bits (178), Expect = 4e-15
 Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
             L L   +L    +  L  L  L  L+L  N ++   P  L  L  L  L L  N ++ 
Sbjct: 224 DELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 279

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIP 182
             P  L+ L+ L  L LN N+L    P  ++ L NL  L +  N++    P
Sbjct: 280 ISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 326

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 71.1 bits (175), Expect = 9e-15
 Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 9/106 (8%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
            RL+L +  +S   +  L  L  LQ L    N +    P  L  L +L  LD+  N ++ 
Sbjct: 137 NRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSD 191

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
                L++L+NL+ L    N+++   P  L  L NL  L ++ N L
Sbjct: 192 --ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL 233

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 68.8 bits (169), Expect = 6e-14
 Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 9/111 (8%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
           T L L N +++   +  L  L  L  LEL  N ++      L  L SL  L    N +T 
Sbjct: 115 TGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD 169

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIP 182
             P  L+ L+ L+ L ++ NK++      L KL NL+ L  +NN +    P
Sbjct: 170 LKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP 216

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 68.1 bits (167), Expect = 1e-13
 Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 9/106 (8%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
             + + N +++   +  L  L  L  L L+ N +    P  L  L +L  L+L  N ++ 
Sbjct: 93  VDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD 148

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
               +LS L++L+ L    N++T   P  L  L  L+ LD+S+N +
Sbjct: 149 --ISALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKV 189

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 66.1 bits (162), Expect = 5e-13
 Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 6/89 (6%)

Query: 89  LGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRL 148
              L       L   N+   +      L  + +L      +       +  L+NL  +  
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQINF 75

Query: 149 NGNKLTGKIPRELTKLGNLKILDVSNNDL 177
           + N+LT   P  L  L  L  + ++NN +
Sbjct: 76  SNNQLTDITP--LKNLTKLVDILMNNNQI 102

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.7 bits (148), Expect = 3e-11
 Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 6/104 (5%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
            RL   N K+S   V  L  L  + +L    N ++   P  L  L  +  L L     T 
Sbjct: 334 QRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNN 175
                 + +S    ++     L    P  ++  G+    D++ N
Sbjct: 390 APVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWN 431

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 72.5 bits (178), Expect = 4e-15
 Identities = 34/124 (27%), Positives = 48/124 (38%), Gaps = 4/124 (3%)

Query: 71  VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKE-LGQLKSLISLDLYHNNL 129
             RL L    +          LE+LQ LEL        I KE    L +L  LDL  + +
Sbjct: 26  TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85

Query: 130 TGPIPPSLSRLSNLKFLRLNGNKLTGKI--PRELTKLGNLKILDVSNNDLCGTIPTAGSF 187
               P +   L +L  LRL    L+  +        L  L  LD+S N +  ++    SF
Sbjct: 86  YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI-RSLYLHPSF 144

Query: 188 SKFS 191
            K +
Sbjct: 145 GKLN 148

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 66.8 bits (163), Expect = 4e-13
 Identities = 28/126 (22%), Positives = 44/126 (34%), Gaps = 7/126 (5%)

Query: 64  TCDADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLD 123
           +C  D R+         L+   VP++  L   + L L  N +          L+ L  L+
Sbjct: 1   SCSFDGRI--AFYRFCNLTQ--VPQV--LNTTERLLLSFNYIRTVTASSFPFLEQLQLLE 54

Query: 124 LYHNNLTGPIPP-SLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIP 182
           L        I   +   L NL+ L L  +K+    P     L +L  L +    L   + 
Sbjct: 55  LGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVL 114

Query: 183 TAGSFS 188
             G F 
Sbjct: 115 KDGYFR 120

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 65.6 bits (160), Expect = 1e-12
 Identities = 25/107 (23%), Positives = 43/107 (40%)

Query: 71  VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLT 130
           V  LDL +G +          L+ L+ L L  N +     +    L +L  L+L +N L 
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327

Query: 131 GPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
                +   L  + ++ L  N +     +    L  L+ LD+ +N L
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 64.8 bits (158), Expect = 2e-12
 Identities = 42/147 (28%), Positives = 56/147 (38%), Gaps = 10/147 (6%)

Query: 72  TRLDLGNGKLSGNLVPEL-GKLERLQYLELYMNNLAGQIPKEL-----GQLKSLISLDLY 125
             L L   + S     +   +   L+ L L  N L      EL       L  L  L L 
Sbjct: 429 QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLN 488

Query: 126 HNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAG 185
           HN L    P   S L+ L+ L LN N+LT  +        NL+ILD+S N L    P   
Sbjct: 489 HNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHN-DLPANLEILDISRNQL--LAPNPD 544

Query: 186 SFSKFSEESFMNNPRLEGPELMGFVRY 212
            F   S     +N  +   EL  F+ +
Sbjct: 545 VFVSLSVLDITHNKFICECELSTFINW 571

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 61.0 bits (148), Expect = 4e-11
 Identities = 37/148 (25%), Positives = 54/148 (36%), Gaps = 13/148 (8%)

Query: 72  TRLDLGNGKLSGNLVPE--LGKLERLQYLELYMNNLAG-QIPKELGQLKSLISLDLYHNN 128
             L L    LS  ++ +     L+ L  L+L  N +    +    G+L SL S+D   N 
Sbjct: 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159

Query: 129 LTGPIPPSLSRLS--NLKFLRLNGNKLTGKIPRELTKLGN------LKILDVSNNDLCGT 180
           +       L  L    L F  L  N L  ++  +  K  N      L+ILDVS N     
Sbjct: 160 IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVD 219

Query: 181 IPTA--GSFSKFSEESFMNNPRLEGPEL 206
           I      + SK    S +    + G   
Sbjct: 220 ITGNFSNAISKSQAFSLILAHHIMGAGF 247

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 59.0 bits (143), Expect = 2e-10
 Identities = 23/101 (22%), Positives = 36/101 (35%), Gaps = 15/101 (14%)

Query: 103 NNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRE-L 161
            NL  Q+P+ L    +   L L  N +      S   L  L+ L L        I +E  
Sbjct: 14  CNLT-QVPQVL---NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAF 69

Query: 162 TKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLE 202
             L NL+ILD+ ++ +               ++F     L 
Sbjct: 70  RNLPNLRILDLGSSKI----------YFLHPDAFQGLFHLF 100

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 58.7 bits (142), Expect = 2e-10
 Identities = 29/139 (20%), Positives = 46/139 (33%), Gaps = 14/139 (10%)

Query: 68  DNRVTRLDLGN--GKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLK--SLISLD 123
            N  T    GN    +S +    L     +       +N+          L   S+  LD
Sbjct: 213 GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLD 272

Query: 124 LYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPT 183
           L H  +          L +LK L L  NK+          L NL++L++S N L      
Sbjct: 273 LSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL------ 326

Query: 184 AGSFSKFSEESFMNNPRLE 202
                +    +F   P++ 
Sbjct: 327 ----GELYSSNFYGLPKVA 341

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 58.3 bits (141), Expect = 3e-10
 Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 5/108 (4%)

Query: 70  RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNL 129
            +  L+L   K++         L+ LQ L L  N L          L  +  +DL  N++
Sbjct: 291 DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI 350

Query: 130 TGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
                 +   L  L+ L L  N LT      +  + ++  + +S N L
Sbjct: 351 AIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKL 393

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.8 bits (132), Expect = 4e-09
 Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 11/124 (8%)

Query: 81  LSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG-PIPPSLSR 139
           L  N +  +  +  +  + L  N L   +PK       +    L  N L    I   L R
Sbjct: 369 LRDNALTTIHFIPSIPDIFLSGNKLV-TLPKINLTANLI---HLSENRLENLDILYFLLR 424

Query: 140 LSNLKFLRLNGNKLTGKIPREL-TKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNN 198
           + +L+ L LN N+ +     +  ++  +L+ L +  N L          ++   + F   
Sbjct: 425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENML-----QLAWETELCWDVFEGL 479

Query: 199 PRLE 202
             L+
Sbjct: 480 SHLQ 483

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 69.1 bits (169), Expect = 4e-14
 Identities = 36/140 (25%), Positives = 54/140 (38%), Gaps = 19/140 (13%)

Query: 68  DNRVTRLDLGNGKLSGNLVPE--LGKLERLQYLELYMNNLAGQIPKE-LGQLKSLISLDL 124
            +    LDL +  LS  L  E    +L  L  L L  N+L   I  E    + +L  LDL
Sbjct: 38  PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDL 95

Query: 125 YHNNLTGPIPP-SLSRLSNLKFLRLNGNKLTGKIPRE-LTKLGNLKILDVSNNDLCGTIP 182
             N+L   +     S L  L+ L L  N +   + R     +  L+ L +S N +     
Sbjct: 96  SSNHLHT-LDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQI----- 148

Query: 183 TAGSFSKFSEESFMNNPRLE 202
                S+F  E   +  +L 
Sbjct: 149 -----SRFPVELIKDGNKLP 163

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.2 bits (125), Expect = 2e-08
 Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 11/112 (9%)

Query: 72  TRLDLGNGKLSGNLVPE--LGKLERLQYLELYMNNLAGQIPKE-LGQLKSLISLDLYHNN 128
             LDL +  L    + E     L+ L+ L LY N++   + +     +  L  L L  N 
Sbjct: 91  RYLDLSSNHLHT--LDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQ 147

Query: 129 LTGPIPP----SLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNND 176
           ++   P       ++L  L  L L+ NKL      +L KL       +  ++
Sbjct: 148 ISR-FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 68.2 bits (167), Expect = 1e-13
 Identities = 30/135 (22%), Positives = 52/135 (38%), Gaps = 14/135 (10%)

Query: 70  RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKE-LGQLKSLISLDLYHNN 128
           R+  L++ +      + P       L  L +   NL   +P   +  L  L  L+L +N 
Sbjct: 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNP 259

Query: 129 LTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRE-LTKLGNLKILDVSNNDLCGTIPTAGSF 187
           ++      L  L  L+ ++L G +L   +       L  L++L+VS N L          
Sbjct: 260 ISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQL---------- 308

Query: 188 SKFSEESFMNNPRLE 202
           +   E  F +   LE
Sbjct: 309 TTLEESVFHSVGNLE 323

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 67.0 bits (164), Expect = 2e-13
 Identities = 31/132 (23%), Positives = 46/132 (34%), Gaps = 12/132 (9%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKE-LGQLKSLISLDLYHNNLT 130
             L++G+  L          L  L+ L L   NL   IP E L  L  LI L L H N+ 
Sbjct: 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN 189

Query: 131 GPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKF 190
                S  RL  LK L ++       +        NL  L +++ +L          +  
Sbjct: 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL----------TAV 239

Query: 191 SEESFMNNPRLE 202
              +  +   L 
Sbjct: 240 PYLAVRHLVYLR 251

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 65.9 bits (161), Expect = 7e-13
 Identities = 37/133 (27%), Positives = 52/133 (39%), Gaps = 10/133 (7%)

Query: 70  RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNL 129
               LDLG  ++      E      L+ LEL  N ++   P     L +L +L L  N L
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 130 TGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSK 189
                   + LSNL  L ++ NK+   +      L NLK L+V +NDL            
Sbjct: 93  KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL----------VY 142

Query: 190 FSEESFMNNPRLE 202
            S  +F     LE
Sbjct: 143 ISHRAFSGLNSLE 155

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 63.6 bits (155), Expect = 3e-12
 Identities = 27/132 (20%), Positives = 49/132 (37%), Gaps = 12/132 (9%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
             L L +  ++        +L RL+ LE+        +        +L SL + H NLT 
Sbjct: 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA 238

Query: 132 PIPP-SLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKF 190
            +P  ++  L  L+FL L+ N ++      L +L  L+ + +    L          +  
Sbjct: 239 -VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL----------AVV 287

Query: 191 SEESFMNNPRLE 202
              +F     L 
Sbjct: 288 EPYAFRGLNYLR 299

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 59.7 bits (145), Expect = 8e-11
 Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 16/134 (11%)

Query: 72  TRLDLGNGKLSGNLVPE--LGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNL 129
             L L + +L   L+P      L  L  L++  N +   +      L +L SL++  N+L
Sbjct: 83  RTLGLRSNRLK--LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140

Query: 130 TGPIPPSLSRLSNLKFLRLNGNKLTGKIPRE-LTKLGNLKILDVSNNDLCGTIPTAGSFS 188
                 + S L++L+ L L    LT  IP E L+ L  L +L + + ++          +
Sbjct: 141 VYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNI----------N 189

Query: 189 KFSEESFMNNPRLE 202
              + SF    RL+
Sbjct: 190 AIRDYSFKRLYRLK 203

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 44.7 bits (106), Expect = 9e-06
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 6/85 (7%)

Query: 72  TRLDLGNGKLSGNLVPE--LGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNL 129
             L+L    +S   +    L +L RLQ ++L    LA   P     L  L  L++  N L
Sbjct: 251 RFLNLSYNPIS--TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308

Query: 130 TGPIPPSL-SRLSNLKFLRLNGNKL 153
           T  +  S+   + NL+ L L+ N L
Sbjct: 309 TT-LEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 10/68 (14%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 121 SLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGT 180
           ++  +       +P  +   +  + L L  N++      E     +L+ L+++ N +   
Sbjct: 15  AVLCHRKRFVA-VPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-SA 70

Query: 181 IPTAGSFS 188
           +   G+F+
Sbjct: 71  VE-PGAFN 77

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 67.1 bits (164), Expect = 1e-13
 Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 7/119 (5%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
           T+L+L   +L+   +   G L  L  L+L  N L   +P     L +L  LD+  N LT 
Sbjct: 58  TQLNLDRAELTK--LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS 114

Query: 132 PIPPSL-SRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSK 189
            +P      L  L+ L L GN+L    P  LT    L+ L ++NN+L   +P AG  + 
Sbjct: 115 -LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL-TELP-AGLLNG 170

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.5 bits (147), Expect = 3e-11
 Identities = 39/118 (33%), Positives = 50/118 (42%), Gaps = 7/118 (5%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
             LDL + +L  +L      L  L  L++  N L       L  L  L  L L  N L  
Sbjct: 80  GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138

Query: 132 PIPPSL-SRLSNLKFLRLNGNKLTGKIPREL-TKLGNLKILDVSNNDLCGTIPTAGSF 187
            +PP L +    L+ L L  N LT ++P  L   L NL  L +  N L  TIP  G F
Sbjct: 139 -LPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIP-KGFF 192

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 50.5 bits (121), Expect = 7e-08
 Identities = 35/107 (32%), Positives = 44/107 (41%), Gaps = 7/107 (6%)

Query: 72  TRLDLGNGKLSGNLVPE--LGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNL 129
           T LD+   +L+   +P   L  L  LQ L L  N L    P  L     L  L L +NNL
Sbjct: 103 TVLDVSFNRLTS--LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160

Query: 130 TGPIPPSL-SRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNN 175
           T  +P  L + L NL  L L  N L   IP+       L    +  N
Sbjct: 161 TE-LPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 122 LDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTI 181
           L L  N L      +L   + L  L L+  +LT K+      L  L  LD+S+N L  ++
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQ-SL 92

Query: 182 PTA 184
           P  
Sbjct: 93  PLL 95

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 67.8 bits (166), Expect = 1e-13
 Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 15/133 (11%)

Query: 72  TRLDLGNGKLSGNLVPE-LGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLT 130
            RLDLG  K    +       L  L+YL L M N+   +P  L  L  L  L++  N+  
Sbjct: 174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFP 231

Query: 131 GPIPPSLSRLSNLKFLRLNGNKLTGKIPRE-LTKLGNLKILDVSNNDLCGTIPTAGSFSK 189
              P S   LS+LK L +  ++++  I R     L +L  L++++N+L          S 
Sbjct: 232 EIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNL----------SS 280

Query: 190 FSEESFMNNPRLE 202
              + F     L 
Sbjct: 281 LPHDLFTPLRYLV 293

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 62.8 bits (153), Expect = 7e-12
 Identities = 37/151 (24%), Positives = 56/151 (37%), Gaps = 27/151 (17%)

Query: 72  TRLDLGNGKLSGNLVPE--LGKLERLQYLELYMNNLAGQIPKE-LGQLKSLISLDLYHNN 128
             L+L +  L+  ++P      L +L+ L L  N +   IP     ++ SL+ LDL    
Sbjct: 126 NTLELFDNWLT--VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELK 182

Query: 129 LTGPIPP-SLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSF 187
               I   +   L NLK+L L    +   +P  LT L  L+ L++S N         GSF
Sbjct: 183 KLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHF--PEIRPGSF 238

Query: 188 ----------------SKFSEESFMNNPRLE 202
                           S     +F     L 
Sbjct: 239 HGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 62.8 bits (153), Expect = 7e-12
 Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 9/126 (7%)

Query: 65  CDADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDL 124
           C   N+ +++      LS   VP+ G     +YL L  NN+          L  L  L L
Sbjct: 50  CSCSNQFSKVVCTRRGLSE--VPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQL 106

Query: 125 YHNNLTGPIPP-SLSRLSNLKFLRLNGNKLTGKIPRE-LTKLGNLKILDVSNNDLCGTIP 182
             N++   I   + + L++L  L L  N LT  IP      L  L+ L + NN +  +IP
Sbjct: 107 GRNSIRQ-IEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPI-ESIP 163

Query: 183 TAGSFS 188
            + +F+
Sbjct: 164 -SYAFN 168

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.5 bits (108), Expect = 5e-06
 Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 6/85 (7%)

Query: 70  RVTRLDLGNGKLSGNLVPE--LGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHN 127
            +  L++         +       L  L+ L +  + ++         L SL+ L+L HN
Sbjct: 219 GLEELEMSGNHFPE--IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276

Query: 128 NLTGPIPPS-LSRLSNLKFLRLNGN 151
           NL+  +P    + L  L  L L+ N
Sbjct: 277 NLSS-LPHDLFTPLRYLVELHLHHN 300

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 67.6 bits (165), Expect = 2e-13
 Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 7/110 (6%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELG---QLKSLISLDLYHNN 128
             LD  N  L+  +    G L  L+ L L MN L  ++ K      Q+KSL  LD+  N+
Sbjct: 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNS 385

Query: 129 LTGPIPPSL-SRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
           ++        S   +L  L ++ N LT  I R L     +K+LD+ +N +
Sbjct: 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP--RIKVLDLHSNKI 433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 62.2 bits (151), Expect = 1e-11
 Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 8/123 (6%)

Query: 72  TRLDLGNGKLS--GNLVPELGKLERLQYLELYMNNLAGQIPKEL-GQLKSLISLDLYHNN 128
             L L   +L     +     +++ LQ L++  N+++    K      KSL+SL++  N 
Sbjct: 351 ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410

Query: 129 LTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFS 188
           LT  I   L     +K L L+ NK+   IP+++ KL  L+ L+V++N L  ++P  G F 
Sbjct: 411 LTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL-KSVP-DGIFD 465

Query: 189 KFS 191
           + +
Sbjct: 466 RLT 468

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 61.0 bits (148), Expect = 3e-11
 Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 4/108 (3%)

Query: 71  VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLT 130
            T L++    +S     ++  L +L+ L +  N +           + L  LDL HN L 
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82

Query: 131 GPIPPSLSRLSNLKFLRLNGNKLTG-KIPRELTKLGNLKILDVSNNDL 177
                S     NLK L L+ N      I +E   +  LK L +S   L
Sbjct: 83  K---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 60.3 bits (146), Expect = 6e-11
 Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 4/95 (4%)

Query: 95  LQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLT 154
              L +  N ++     ++  L  L  L + HN +             L++L L+ NKL 
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82

Query: 155 GKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSK 189
            KI        NLK LD+S N     +P    F  
Sbjct: 83  -KIS--CHPTVNLKHLDLSFNAF-DALPICKEFGN 113

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.9 bits (132), Expect = 3e-09
 Identities = 29/125 (23%), Positives = 43/125 (34%), Gaps = 5/125 (4%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
             L + + ++    +      + L+YL+L  N L   I        +L  LDL  N    
Sbjct: 48  RILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-IS--CHPTVNLKHLDLSFNAFDA 104

Query: 132 -PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKF 190
            PI      +S LKFL L+   L       +  L   K+L V                 F
Sbjct: 105 LPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDP-EGLQDF 163

Query: 191 SEESF 195
           + ES 
Sbjct: 164 NTESL 168

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.5 bits (131), Expect = 4e-09
 Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 6/106 (5%)

Query: 72  TRLDLGNGKLSGNLVPEL-GKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLT 130
            +LD+    +S +         + L  L +  N L   I + L     +  LDL+ N + 
Sbjct: 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK 434

Query: 131 GPIPPSLSRLSNLKFLRLNGNKLTGKIPRE-LTKLGNLKILDVSNN 175
             IP  + +L  L+ L +  N+L   +P     +L +L+ + +  N
Sbjct: 435 S-IPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 53.3 bits (128), Expect = 1e-08
 Identities = 20/129 (15%), Positives = 37/129 (28%), Gaps = 5/129 (3%)

Query: 69  NRVTRLDLGNGKLSGNLVPELG-----KLERLQYLELYMNNLAGQIPKELGQLKSLISLD 123
             V    + N KL G L           L+ L   ++  +              ++   +
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKN 306

Query: 124 LYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPT 183
              +          S++S    L  + N LT  +      L  L+ L +  N L      
Sbjct: 307 FTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI 366

Query: 184 AGSFSKFSE 192
           A   ++   
Sbjct: 367 AEMTTQMKS 375

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.0 bits (122), Expect = 7e-08
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 3/75 (4%)

Query: 103 NNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELT 162
           N L   +PK+L   +    L++  N ++      +  LS L+ L ++ N++         
Sbjct: 10  NGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFK 66

Query: 163 KLGNLKILDVSNNDL 177
               L+ LD+S+N L
Sbjct: 67  FNQELEYLDLSHNKL 81

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 64  TCDADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLD 123
            C     +  L++ +  L+  +   L    R++ L+L+ N +   IPK++ +L++L  L+
Sbjct: 394 DCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELN 450

Query: 124 LYHNNLTGPIPPSLSRLSNLKFLRLNGN 151
           +  N L         RL++L+ + L+ N
Sbjct: 451 VASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 65.8 bits (161), Expect = 5e-13
 Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 5/109 (4%)

Query: 72  TRLDLGNGKLSGNLVPE--LGKLERLQYLELYMNNLAGQIPKE-LGQLKSLISLDLYHNN 128
             LD+ +      +        L  L+ L++  N+       +   +L++L  LDL    
Sbjct: 129 IYLDISHTHTR--VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186

Query: 129 LTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
           L    P + + LS+L+ L ++ N            L +L++LD S N +
Sbjct: 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 64.3 bits (157), Expect = 1e-12
 Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 7/122 (5%)

Query: 70  RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKE--LGQLKSLISLDLYHN 127
            +  LDL    +   +      LE+L++L+   +NL  Q+ +      L++LI LD+ H 
Sbjct: 79  SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHT 136

Query: 128 NLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRE-LTKLGNLKILDVSNNDLCGTIPTAGS 186
           +         + LS+L+ L++ GN        +  T+L NL  LD+S   L   +    +
Sbjct: 137 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-EQLS-PTA 194

Query: 187 FS 188
           F+
Sbjct: 195 FN 196

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 63.5 bits (155), Expect = 3e-12
 Identities = 29/120 (24%), Positives = 45/120 (37%), Gaps = 7/120 (5%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLT- 130
           T +   +  L+   VP  G       LEL  N L         +L  L  L L  N L+ 
Sbjct: 10  TEIRCNSKGLTS--VPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 131 -GPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSK 189
            G    S    ++LK+L L+ N +   +      L  L+ LD  +++L   +     F  
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFLS 124

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 15/97 (15%)

Query: 108 QIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGK--IPRELTKLG 165
            +P  +    S   L+L  N L         +L+ L  L L+ N L+ K    +      
Sbjct: 21  SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78

Query: 166 NLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLE 202
           +LK LD+S N +  T+ +           F+   +LE
Sbjct: 79  SLKYLDLSFNGV-ITMSSN----------FLGLEQLE 104

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 23/86 (26%), Positives = 29/86 (33%), Gaps = 7/86 (8%)

Query: 72  TRLDLGNGKLSGNLVPE--LGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNL 129
           T LDL   +L    +       L  LQ L +  NN           L SL  LD   N++
Sbjct: 178 TFLDLSQCQLEQ--LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235

Query: 130 TGPIPPSL--SRLSNLKFLRLNGNKL 153
                        S+L FL L  N  
Sbjct: 236 MT-SKKQELQHFPSSLAFLNLTQNDF 260

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.5 bits (160), Expect = 1e-12
 Identities = 38/133 (28%), Positives = 58/133 (43%), Gaps = 15/133 (11%)

Query: 72  TRLDLGNGKLSGNLVPE-LGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLT 130
            RLDLG  K    +       L  L+YL L M NL  +IP  L  L  L  LDL  N+L+
Sbjct: 163 RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS 220

Query: 131 GPIPPSLSRLSNLKFLRLNGNKLTGKIPRE-LTKLGNLKILDVSNNDLCGTIPTAGSFSK 189
              P S   L +L+ L +  +++   I R     L +L  +++++N+L          + 
Sbjct: 221 AIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNL----------TL 269

Query: 190 FSEESFMNNPRLE 202
              + F     LE
Sbjct: 270 LPHDLFTPLHHLE 282

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 63.6 bits (155), Expect = 3e-12
 Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 7/125 (5%)

Query: 65  CDADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDL 124
           C   N+ +++      L    VP+ G     + L L+ N +          L+ L  L L
Sbjct: 39  CSCSNQFSKVICVRKNLRE--VPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQL 95

Query: 125 YHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRE-LTKLGNLKILDVSNNDLCGTIPT 183
             N++      + + L+NL  L L  N+LT  IP      L  LK L + NN +  +IP 
Sbjct: 96  SRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPI-ESIP- 152

Query: 184 AGSFS 188
           + +F+
Sbjct: 153 SYAFN 157

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.1 bits (138), Expect = 7e-10
 Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 9/111 (8%)

Query: 72  TRLDLGNGKLSGNLVPE-LGKLERLQYLELYMNNLAGQIPKE-LGQLKSLISLDLYHNNL 129
             L L    +   +       L  L  LEL+ N L   IP      L  L  L L +N +
Sbjct: 91  EILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPI 148

Query: 130 TGPIPPSL-SRLSNLKFLRL-NGNKLTGKIPRE-LTKLGNLKILDVSNNDL 177
              IP    +R+ +L+ L L    +L+  I       L NL+ L+++  +L
Sbjct: 149 ES-IPSYAFNRIPSLRRLDLGELKRLS-YISEGAFEGLSNLRYLNLAMCNL 197

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 64.3 bits (157), Expect = 2e-12
 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 5/99 (5%)

Query: 81  LSGNLVPEL--GKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLS 138
            S N +  +       L  L+L  NNL       L     L+ +DL +N L   +     
Sbjct: 212 ASHNSINVVRGPVNVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFV 269

Query: 139 RLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
           ++  L+ L ++ N+L   +      +  LK+LD+S+N L
Sbjct: 270 KMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHL 307

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.8 bits (148), Expect = 3e-11
 Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 6/111 (5%)

Query: 70  RVTRLDLGNGKLSGNLVPE-LGKLERLQYLELYMNNLAGQIPKELGQ-LKSLISLDLYHN 127
           +V  L+L + ++   +          +Q L +  N +   +P  + Q +  L  L L  N
Sbjct: 70  QVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERN 127

Query: 128 NLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRE-LTKLGNLKILDVSNNDL 177
           +L+            L  L ++ N L  +I  +      +L+ L +S+N L
Sbjct: 128 DLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRL 177

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.1 bits (146), Expect = 5e-11
 Identities = 18/116 (15%), Positives = 36/116 (31%), Gaps = 10/116 (8%)

Query: 87  PELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFL 146
            E   L   + +    + +       L   + +  L+L    +      + +    ++ L
Sbjct: 39  FEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKL 98

Query: 147 RLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLE 202
            +  N +    P     +  L +L +  NDL          S      F N P+L 
Sbjct: 99  YMGFNAIRYLPPHVFQNVPLLTVLVLERNDL----------SSLPRGIFHNTPKLT 144

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 29/131 (22%), Positives = 47/131 (35%), Gaps = 23/131 (17%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
             L L + +L+     +L  +  L +  +  N L       L    ++  LD  HN++  
Sbjct: 168 QNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSINV 219

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFS 191
            +   +     L  L+L  N LT      L     L  +D+S N+L           K  
Sbjct: 220 -VRGPV--NVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNEL----------EKIM 264

Query: 192 EESFMNNPRLE 202
              F+   RLE
Sbjct: 265 YHPFVKMQRLE 275

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 7/106 (6%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
            RL + N +L   L      +  L+ L+L  N+L   + +   Q   L +L L HN++  
Sbjct: 275 ERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV- 331

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
            +  S      LK L L+ N       R L    N+    V + D 
Sbjct: 332 TLKLST--HHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQ 373

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 64.7 bits (158), Expect = 2e-12
 Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 9/113 (7%)

Query: 70  RVTRLDLGNGKLSGNLVPE---LGKLERLQYLELYMNNLA--GQIPKELGQLKSLISLDL 124
            +  LDL    +    +      G    LQ L L  N+L    +  + L  LK+L SLD+
Sbjct: 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDI 394

Query: 125 YHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
             N    P+P S      ++FL L+   +   +   +     L++LDVSNN+L
Sbjct: 395 SRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNL 443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 64.4 bits (157), Expect = 3e-12
 Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 6/123 (4%)

Query: 72  TRLDLGNGKLSGNLVPE-LGKLERLQYLELYMNNLAG-QIPKELGQLKSLISLDLYHNNL 129
             LDL +  LS +L     G L  L+YL L  N      +      L +L +L + +   
Sbjct: 77  EHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 135

Query: 130 TGPIPP-SLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFS 188
              I     + L++L  L +    L     + L  + ++  L +  ++            
Sbjct: 136 FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES--AFLLEIFAD 193

Query: 189 KFS 191
             S
Sbjct: 194 ILS 196

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 63.2 bits (154), Expect = 6e-12
 Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 9/128 (7%)

Query: 63  VTCDADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISL 122
           ++CDA       D  +   +   +P  G    ++ L+L  N +      +L    +L  L
Sbjct: 2   LSCDASGVC---DGRSRSFTS--IPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVL 55

Query: 123 DLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRE-LTKLGNLKILDVSNNDLCGTI 181
            L  + +      +   L +L+ L L+ N L+  +       L +LK L++  N    T+
Sbjct: 56  ILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPY-QTL 113

Query: 182 PTAGSFSK 189
                F  
Sbjct: 114 GVTSLFPN 121

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.8 bits (140), Expect = 4e-10
 Identities = 21/113 (18%), Positives = 44/113 (38%), Gaps = 5/113 (4%)

Query: 84  NLVPELGKLE--RLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLS 141
           ++V ELGK+E   ++ L +    L   +      L+ +  + + ++ +          L 
Sbjct: 275 DVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLK 334

Query: 142 NLKFLRLNGNKLTGKIPRE---LTKLGNLKILDVSNNDLCGTIPTAGSFSKFS 191
           +L+FL L+ N +  +  +         +L+ L +S N L     T        
Sbjct: 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 53.2 bits (128), Expect = 2e-08
 Identities = 17/105 (16%), Positives = 34/105 (32%), Gaps = 1/105 (0%)

Query: 72  TRLDLGNGKLSGNLVPE-LGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLT 130
             L +GN +    +       L  L  LE+   +L     + L  ++ +  L L+ +   
Sbjct: 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185

Query: 131 GPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNN 175
             +      LS++++L L    L       L        +     
Sbjct: 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF 230

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 51.3 bits (123), Expect = 5e-08
 Identities = 21/121 (17%), Positives = 46/121 (38%), Gaps = 13/121 (10%)

Query: 59  TWFHVTCDADNRVTRLDLGNGKLSGNLVPEL--GKLERLQYLELYMNNLAGQIPKELGQL 116
                +C    ++  L+L     S   +  +     + L+ L++  NNL       L +L
Sbjct: 400 HPMPDSCQWPEKMRFLNL-----SSTGIRVVKTCIPQTLEVLDVSNNNLD-SFSLFLPRL 453

Query: 117 KSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNND 176
           + L    +  N L   +P +      L  ++++ N+L         +L +L+ + +  N 
Sbjct: 454 QEL---YISRNKLKT-LPDASL-FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508

Query: 177 L 177
            
Sbjct: 509 W 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.1 bits (107), Expect = 7e-06
 Identities = 22/142 (15%), Positives = 46/142 (32%), Gaps = 12/142 (8%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
             L++    L       L  +  + +L L+++  A  +      L S+  L+L   NL  
Sbjct: 151 NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTG----------KIPRELTKLGNLKILDVSNNDLCGTI 181
                L        ++    + +           K+ R + +L  ++  D + N L    
Sbjct: 211 FQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFN 270

Query: 182 PTAGSFSKFSEESFMNNPRLEG 203
           P+       SE   +    +  
Sbjct: 271 PS--ESDVVSELGKVETVTIRR 290

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.9 bits (156), Expect = 2e-12
 Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 8/107 (7%)

Query: 71  VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLT 130
             ++  G   ++         L+ +  L  +   +   I   +  L +LI L+L  N +T
Sbjct: 21  AIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQIT 76

Query: 131 GPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
             + P L  L+ +  L L+GN L   +   +  L ++K LD+++  +
Sbjct: 77  D-LAP-LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQI 119

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 8/106 (7%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
           T L+L    L    V  +  L+ ++ L+L    +    P  L  L +L  L L  N +T 
Sbjct: 88  TELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITN 143

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
            I P L+ L+NL++L +   +++  +   L  L  L  L   +N +
Sbjct: 144 -ISP-LAGLTNLQYLSIGNAQVS-DLT-PLANLSKLTTLKADDNKI 185

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 6/106 (5%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
             L +GN ++S   +  L  L +L  L+   N ++  I   L  L +LI + L +N ++ 
Sbjct: 154 QYLSIGNAQVSD--LTPLANLSKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQISD 209

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
             P  L+  SNL  + L    +T +       L    ++   +   
Sbjct: 210 VSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.4 bits (113), Expect = 9e-07
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 113 LGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDV 172
              L + I +    +N+T  +    + L  +  L   G  +T  I   +  L NL  L++
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLEL 70

Query: 173 SNNDL 177
            +N +
Sbjct: 71  KDNQI 75

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 64.4 bits (156), Expect = 2e-12
 Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 8/107 (7%)

Query: 71  VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLT 130
             + +L    ++        +L  +  +    +++   + + +  L ++  L L  N LT
Sbjct: 23  TIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLT 78

Query: 131 GPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
             I P L+ L NL +L L+ NK+   +   L  L  LK L + +N +
Sbjct: 79  D-IKP-LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGI 121

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 63.6 bits (154), Expect = 4e-12
 Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 8/106 (7%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
             L L   K+  +L   L  L++L+ L L  N ++  I   L  L  L SL L +N +T 
Sbjct: 90  GWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKITD 145

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
                LSRL+ L  L L  N+++  I   L  L  L+ L +S N +
Sbjct: 146 ITV--LSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHI 187

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.7 bits (144), Expect = 8e-11
 Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 8/106 (7%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
             L L +  +S   +  L  L +L+ L L  N +       L +L  L +L L  N ++ 
Sbjct: 112 KSLSLEHNGIS--DINGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISD 167

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
            I P L+ L+ L+ L L+ N ++    R L  L NL +L++ + + 
Sbjct: 168 -IVP-LAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQEC 209

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 57.4 bits (138), Expect = 5e-10
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 6/89 (6%)

Query: 89  LGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRL 148
                      L   ++   +     +L S+  +   ++++   +   +  L N+  L L
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQG-IQYLPNVTKLFL 72

Query: 149 NGNKLTGKIPRELTKLGNLKILDVSNNDL 177
           NGNKLT  I   LT L NL  L +  N +
Sbjct: 73  NGNKLT-DIK-PLTNLKNLGWLFLDENKI 99

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.2 bits (101), Expect = 3e-05
 Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 6/104 (5%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
             L L + ++S   +  L  L +LQ L L  N+++    + L  LK+L  L+L+      
Sbjct: 156 DTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLN 211

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNN 175
                 S L     ++     L    P  ++  G+ +  +V  +
Sbjct: 212 KPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWH 253

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 63.1 bits (154), Expect = 3e-12
 Identities = 32/134 (23%), Positives = 48/134 (35%), Gaps = 16/134 (11%)

Query: 72  TRLDLGNGKLSGNLVPE--LGKLERLQYLELYMNNLAGQIPKE-LGQLKSLISLDLYHNN 128
             L L    L    +       L  LQYL L  N L   +P +    L +L  L L+ N 
Sbjct: 108 HTLHLDRCGLQ--ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNR 164

Query: 129 LTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFS 188
           ++     +   L +L  L L+ N++    P     LG L  L +  N+L          S
Sbjct: 165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL----------S 214

Query: 189 KFSEESFMNNPRLE 202
               E+      L+
Sbjct: 215 ALPTEALAPLRALQ 228

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 27/127 (21%), Positives = 44/127 (34%), Gaps = 7/127 (5%)

Query: 64  TCDADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLD 123
            C  + +VT        L    VP  G     Q + L+ N ++          ++L  L 
Sbjct: 7   VCYNEPKVT-TSCPQQGLQA--VPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILW 62

Query: 124 LYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRE-LTKLGNLKILDVSNNDLCGTIP 182
           L+ N L      + + L+ L+ L L+ N     +       LG L  L +    L   + 
Sbjct: 63  LHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELG 121

Query: 183 TAGSFSK 189
             G F  
Sbjct: 122 -PGLFRG 127

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 72  TRLDLGNGKLSGNLVPE--LGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNL 129
           T L L   ++S   VPE     L  L  L L+ N +A   P     L  L++L L+ NNL
Sbjct: 156 THLFLHGNRISS--VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213

Query: 130 TGPIPPS-LSRLSNLKFLRLNGN 151
           +  +P   L+ L  L++LRLN N
Sbjct: 214 SA-LPTEALAPLRALQYLRLNDN 235

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 64.2 bits (156), Expect = 3e-12
 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 6/108 (5%)

Query: 70  RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNL 129
            V  LD  +  ++   V        L  L+L  NNL       L     L+ +DL +N L
Sbjct: 212 AVEELDASHNSINV--VRG-PVNVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNEL 266

Query: 130 TGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
              +     ++  L+ L ++ N+L   +      +  LK+LD+S+N L
Sbjct: 267 EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHL 313

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 59.2 bits (143), Expect = 1e-10
 Identities = 21/146 (14%), Positives = 44/146 (30%), Gaps = 19/146 (13%)

Query: 64  TCDADNRVTRLDLGNGKLSGN-----LVPELGKLERLQYLELYMNNLAGQIPKE-LGQLK 117
            C   N        +  +           E   L   + +    + +  ++P   L   +
Sbjct: 17  KCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFR 75

Query: 118 SLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRE-LTKLGNLKILDVSNND 176
            +  L+L    +      + +    ++ L +  N +   +P      +  L +L +  ND
Sbjct: 76  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERND 134

Query: 177 LCGTIPTAGSFSKFSEESFMNNPRLE 202
           L          S      F N P+L 
Sbjct: 135 L----------SSLPRGIFHNTPKLT 150

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 55.7 bits (134), Expect = 2e-09
 Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 11/110 (10%)

Query: 72  TRLDLGNGKLSGNLVPE--LGKLERLQYLELYMNNLAGQIPKEL-GQLKSLISLDLYHNN 128
            +L +G   +    +P      +  L  L L  N+L+  +P+ +      L +L + +NN
Sbjct: 102 QKLYMGFNAIRY--LPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNN 158

Query: 129 LTGPIPPS-LSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
           L   I        ++L+ L+L+ N+LT  +   L  + +L   +VS N L
Sbjct: 159 LER-IEDDTFQATTSLQNLQLSSNRLT-HVDLSL--IPSLFHANVSYNLL 204

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 55.7 bits (134), Expect = 2e-09
 Identities = 28/124 (22%), Positives = 44/124 (35%), Gaps = 22/124 (17%)

Query: 81  LSGNLVPEL--GKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLS 138
           LS N +  +    +  L +  +  N L       L    ++  LD  HN++   +   + 
Sbjct: 178 LSSNRLTHVDLSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSINV-VRGPV- 230

Query: 139 RLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNN 198
               L  L+L  N LT      L     L  +D+S N+L           K     F+  
Sbjct: 231 -NVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNEL----------EKIMYHPFVKM 277

Query: 199 PRLE 202
            RLE
Sbjct: 278 QRLE 281

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 52.6 bits (126), Expect = 2e-08
 Identities = 28/129 (21%), Positives = 49/129 (37%), Gaps = 6/129 (4%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
            RL + N +L   L      +  L+ L+L  N+L   + +   Q   L +L L HN++  
Sbjct: 281 ERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV- 337

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPREL-TKLGNLKILDVSNNDLCGTIPTAGSFSKF 190
            +  S      LK L L+ N       R L   +    + D   +         G   K 
Sbjct: 338 TLKLST--HHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKE 395

Query: 191 SEESFMNNP 199
           S++ +++  
Sbjct: 396 SDKPYLDRL 404

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 63.4 bits (154), Expect = 3e-12
 Identities = 32/114 (28%), Positives = 42/114 (36%), Gaps = 11/114 (9%)

Query: 72  TRLDLGNGKLSGNLVPE----LGKLERLQYLELYMNNLA---GQIPKELGQLKSLISLDL 124
           + LDL +    G           K   LQ L L    +    G           L  LDL
Sbjct: 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDL 235

Query: 125 YHNNLTG-PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
            HN+L      PS    S L  L L+   L  ++P+ L     L +LD+S N L
Sbjct: 236 SHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPA--KLSVLDLSYNRL 286

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 58.0 bits (140), Expect = 3e-10
 Identities = 19/116 (16%), Positives = 34/116 (29%), Gaps = 8/116 (6%)

Query: 70  RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKE----LGQLKSLISLDLY 125
            +  L +           ++     L  L+L  N   G+          +  +L  L L 
Sbjct: 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR 209

Query: 126 HNNLT---GPIPPSLSRLSNLKFLRLNGNKLTGKIPREL-TKLGNLKILDVSNNDL 177
           +  +    G      +    L+ L L+ N L              L  L++S   L
Sbjct: 210 NAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.5 bits (131), Expect = 4e-09
 Identities = 23/123 (18%), Positives = 42/123 (34%), Gaps = 11/123 (8%)

Query: 71  VTRLDLGNGKLSG--NLVPELG--KLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYH 126
           +  L+L N   +     + EL       L+ L +   +      +++    +L +LDL  
Sbjct: 123 LNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSD 182

Query: 127 NNLTGPIPPSLS----RLSNLKFLRLNGNKLT---GKIPRELTKLGNLKILDVSNNDLCG 179
           N   G      +    +   L+ L L    +    G           L+ LD+S+N L  
Sbjct: 183 NPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242

Query: 180 TIP 182
              
Sbjct: 243 AAG 245

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 25/85 (29%), Positives = 30/85 (35%), Gaps = 6/85 (7%)

Query: 72  TRLDLGNGKLSGNLVPEL-GKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLT 130
             LDL +  L             +L  L L    L  Q+PK L     L  LDL +N L 
Sbjct: 231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPA--KLSVLDLSYNRLD 287

Query: 131 GPIPPSLSRLSNLKFLRLNGNKLTG 155
               PS   L  +  L L GN    
Sbjct: 288 RN--PSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 6/106 (5%)

Query: 95  LQYLELYMNNLAGQIP-KELGQLKSLISLDLYHNNLTGPIPPSLSRL---SNLKFLRLNG 150
           L+YL   ++  A      ++ +  SL  L +    +   I     R+   S L+ L L  
Sbjct: 45  LEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLEN 104

Query: 151 NKLTGKIPRELTKLG--NLKILDVSNNDLCGTIPTAGSFSKFSEES 194
            ++TG  P  L +    +L IL++ N              ++ +  
Sbjct: 105 LEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPG 150

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 63.1 bits (154), Expect = 4e-12
 Identities = 29/137 (21%), Positives = 59/137 (43%), Gaps = 12/137 (8%)

Query: 69  NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKE-LGQLKSLISLDLYHN 127
            +++ + + +  ++   +P+ G    L  L L  N +  ++    L  L +L  L L  N
Sbjct: 171 KKLSYIRIADTNITT--IPQ-GLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFN 226

Query: 128 NLTGPIPP-SLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGS 186
           +++  +   SL+   +L+ L LN NKL  K+P  L     ++++ + NN++   I  +  
Sbjct: 227 SISA-VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI-SAIG-SND 282

Query: 187 FSKFSEESFMNNPRLEG 203
           F               G
Sbjct: 283 FC--PPGYNTKKASYSG 297

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 61.9 bits (151), Expect = 1e-11
 Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 5/119 (4%)

Query: 71  VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLT 130
              LDL N K++     +   L+ L  L L  N ++   P     L  L  L L  N L 
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113

Query: 131 GPIPPSLSRLSNLKFLRLNGNKLTGKIPRE-LTKLGNLKILDVSNNDLCGTIPTAGSFS 188
             +P  +     L+ LR++ N++T K+ +     L  + ++++  N L  +    G+F 
Sbjct: 114 E-LPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 26/125 (20%), Positives = 46/125 (36%), Gaps = 11/125 (8%)

Query: 72  TRLDLGNGKLSGNLVPE--LGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNL 129
           T L L   K++   V    L  L  L  L L  N+++      L     L  L L +N L
Sbjct: 195 TELHLDGNKITK--VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252

Query: 130 TGPIPPSLSRLSNLKFLRLNGNKLTG------KIPRELTKLGNLKILDVSNNDLCGTIPT 183
              +P  L+    ++ + L+ N ++         P   TK  +   + + +N +      
Sbjct: 253 VK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 311

Query: 184 AGSFS 188
             +F 
Sbjct: 312 PSTFR 316

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 60.0 bits (146), Expect = 5e-11
 Identities = 35/136 (25%), Positives = 54/136 (39%), Gaps = 21/136 (15%)

Query: 72  TRLDLGNGKLSGNLVPE--LGKLERLQYLELYMNNL-AGQIPKE-LGQLKSLISLDLYHN 127
             L +   +++   V +     L ++  +EL  N L +  I       +K L  + +   
Sbjct: 124 QELRVHENEIT--KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181

Query: 128 NLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRE-LTKLGNLKILDVSNNDLCGTIPTAGS 186
           N+T  IP  L    +L  L L+GNK+T K+    L  L NL  L +S N +         
Sbjct: 182 NITT-IPQGL--PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSI--------- 228

Query: 187 FSKFSEESFMNNPRLE 202
            S     S  N P L 
Sbjct: 229 -SAVDNGSLANTPHLR 243

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 56.9 bits (138), Expect = 5e-10
 Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 13/114 (11%)

Query: 72  TRLDLGNGKLSGNLVPE--LGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNL 129
            +L L    +S   V    L     L+ L L  N L  ++P  L   K +  + L++NN+
Sbjct: 219 AKLGLSFNSISA--VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275

Query: 130 TG------PIPPSLSRLSNLKFLRLNGNKLT-GKIPREL-TKLGNLKILDVSNN 175
           +         P   ++ ++   + L  N +   +I       +     + + N 
Sbjct: 276 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 3/83 (3%)

Query: 95  LQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLT 154
           L+ ++     L  ++PK+L        LDL +N +T         L NL  L L  NK++
Sbjct: 33  LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 155 GKIPRELTKLGNLKILDVSNNDL 177
              P     L  L+ L +S N L
Sbjct: 90  KISPGAFAPLVKLERLYLSKNQL 112

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.5 bits (98), Expect = 8e-05
 Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 9/89 (10%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNL------AGQIPKELGQLKSLISLDLY 125
             L L N KL   +   L   + +Q + L+ NN+          P    +  S   + L+
Sbjct: 243 RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLF 301

Query: 126 HNNLT-GPIPPSL-SRLSNLKFLRLNGNK 152
            N +    I PS    +     ++L   K
Sbjct: 302 SNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 63.2 bits (153), Expect = 5e-12
 Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 7/120 (5%)

Query: 94  RLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKL 153
            ++ L L   +L   +   L QL  +  LDL HN L   +PP+L+ L  L+ L+ + N L
Sbjct: 442 DVRVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNAL 498

Query: 154 TGKIPRELTKLGNLKILDVSNNDLCG--TIPTAGSFSKFSEESFMNNPRLEGPELMGFVR 211
              +   +  L  L+ L + NN L     I    S  +    +   N   +   +   + 
Sbjct: 499 E-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLA 556

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.5 bits (138), Expect = 5e-10
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 3/84 (3%)

Query: 94  RLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKL 153
           R  YL+   +    +      +   +  L L H +LT  +   L +L  +  L L+ N+L
Sbjct: 418 RAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRL 475

Query: 154 TGKIPRELTKLGNLKILDVSNNDL 177
              +P  L  L  L++L  S+N L
Sbjct: 476 R-ALPPALAALRCLEVLQASDNAL 498

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 63.1 bits (153), Expect = 6e-12
 Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 9/98 (9%)

Query: 80  KLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSR 139
               +      K E+        N     + +    +     L L   NL+  +P +L  
Sbjct: 24  GTYADYFSAWDKWEKQALPGENRNEAVSLLKE--CLINQFSELQLNRLNLSS-LPDNL-- 78

Query: 140 LSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
              +  L +  N L   +P       +L+ LD  +N L
Sbjct: 79  PPQITVLEITQNALI-SLPEL---PASLEYLDACDNRL 112

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 62.7 bits (152), Expect = 8e-12
 Identities = 23/110 (20%), Positives = 39/110 (35%), Gaps = 10/110 (9%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSL----ISLDLYHN 127
             L + N +L    +PEL   E L+ L++  N L   +P    +        I      N
Sbjct: 163 EVLSVRNNQL--TFLPEL--PESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCREN 217

Query: 128 NLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
            +T  IP ++  L     + L  N L+ +I   L++              
Sbjct: 218 RITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 62.3 bits (151), Expect = 1e-11
 Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 15/109 (13%)

Query: 69  NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNN 128
           N+ + L L    LS +L   L    ++  LE+  N L   +P+    L+ L   D   N 
Sbjct: 59  NQFSELQLNRLNLS-SLPDNLPP--QITVLEITQNAL-ISLPELPASLEYL---DACDNR 111

Query: 129 LTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
           L+  +P   +   +LK L ++ N+LT  +P        L+ ++  NN L
Sbjct: 112 LST-LPELPA---SLKHLDVDNNQLT-MLPELP---ALLEYINADNNQL 152

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 61.1 bits (148), Expect = 3e-11
 Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 16/106 (15%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
             LD  + +LS   +PEL     L++L++  N L   +P+    L+ +   +  +N LT 
Sbjct: 103 EYLDACDNRLST--LPEL--PASLKHLDVDNNQLT-MLPELPALLEYI---NADNNQLTM 154

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
            +P   +   +L+ L +  N+LT  +P       +L+ LDVS N L
Sbjct: 155 -LPELPT---SLEVLSVRNNQLT-FLPEL---PESLEALDVSTNLL 192

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 47.3 bits (112), Expect = 2e-06
 Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 6/95 (6%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQ----YLELYMNNLAGQIPKELGQLKSLISLDLYHN 127
             LD+    L  +L     +    +    +     N +   IP+ +  L    ++ L  N
Sbjct: 183 EALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDN 240

Query: 128 NLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELT 162
            L+  I  SLS+ +            +    ++ T
Sbjct: 241 PLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNT 275

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 62.6 bits (152), Expect = 9e-12
 Identities = 28/109 (25%), Positives = 43/109 (39%), Gaps = 16/109 (14%)

Query: 69  NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNN 128
             +T L + +  L+   +P L     L+ LE+  N L   +P     L  L        +
Sbjct: 61  AHITTLVIPDNNLTS--LPAL--PPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTH 115

Query: 129 LTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
           L        +  S L  L + GN+LT  +P        L+ L VS+N L
Sbjct: 116 LP-------ALPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQL 153

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 61.8 bits (150), Expect = 2e-11
 Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 16/106 (15%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
             L + + +L+ +L     +L +L       NN    +P     LK L    +  N LT 
Sbjct: 184 QELSVSDNQLA-SLPTLPSELYKLWAY----NNRLTSLPALPSGLKEL---IVSGNRLTS 235

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
            +P   S    LK L ++GN+LT  +P        L  L V  N L
Sbjct: 236 -LPVLPS---ELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQL 273

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 59.5 bits (144), Expect = 1e-10
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 8/86 (9%)

Query: 92  LERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGN 151
                 L +  + L   +P  L     + +L +  NNLT  +P        L+ L ++GN
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPAL---PPELRTLEVSGN 91

Query: 152 KLTGKIPRELTKLGNLKILDVSNNDL 177
           +LT  +P     L  L I       L
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHL 116

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 58.4 bits (141), Expect = 3e-10
 Identities = 35/106 (33%), Positives = 48/106 (45%), Gaps = 16/106 (15%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
            +L   N +L+   +P L     LQ L +  N LA  +P    +L     L  Y+N LT 
Sbjct: 164 CKLWAYNNQLTS--LPML--PSGLQELSVSDNQLA-SLPTLPSELY---KLWAYNNRLT- 214

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
            +P      S LK L ++GN+LT  +P        LK L VS N L
Sbjct: 215 SLPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRL 253

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 58.4 bits (141), Expect = 3e-10
 Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 16/106 (15%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
            +L +   +L+   +P L     LQ L +  N LA  +P    +L  L     Y+N LT 
Sbjct: 124 CKLWIFGNQLTS--LPVL--PPGLQELSVSDNQLA-SLPALPSELCKL---WAYNNQLTS 175

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
            +P      S L+ L ++ N+L   +P        L  L   NN L
Sbjct: 176 -LPML---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRL 213

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 8/116 (6%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
             L +   +L+   +P L     L  L +Y N L  ++P+ L  L S  +++L  N L+ 
Sbjct: 244 KELMVSGNRLTS--LPML--PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 298

Query: 132 PIPPSLSRLSNLKFL---RLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTA 184
               +L  +++        +  +      PRE   L       +         P  
Sbjct: 299 RTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPAD 354

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 62.1 bits (151), Expect = 1e-11
 Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 5/97 (5%)

Query: 95  LQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPP-SLSRLSNLKFLRLNGNKL 153
           ++ L+L  N +      +L +  +L +L L  N +   I   S S L +L+ L L+ N L
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSLEHLDLSYNYL 112

Query: 154 TGKIPREL-TKLGNLKILDVSNNDLCGTIPTAGSFSK 189
           +  +       L +L  L++  N    T+     FS 
Sbjct: 113 S-NLSSSWFKPLSSLTFLNLLGNPY-KTLGETSLFSH 147

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 58.6 bits (142), Expect = 2e-10
 Identities = 25/141 (17%), Positives = 55/141 (39%), Gaps = 7/141 (4%)

Query: 72  TRLDLGNGKLSGNLVPE--LGKLERLQYLELYMNNLAGQIPKE-LGQLKSLISLDLYHNN 128
           T L+L        L        L +LQ L +   +   +I ++    L  L  L++  ++
Sbjct: 127 TFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185

Query: 129 LTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCG---TIPTAG 185
           L    P SL  + N+  L L+  +    +   +    +++ L++ + DL     +  + G
Sbjct: 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG 245

Query: 186 SFSKFSEESFMNNPRLEGPEL 206
             +   ++    N ++    L
Sbjct: 246 ETNSLIKKFTFRNVKITDESL 266

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 51.7 bits (124), Expect = 4e-08
 Identities = 19/115 (16%), Positives = 43/115 (37%), Gaps = 11/115 (9%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKEL-GQLKSLISLDLYHNNLT 130
             L++    L       L  ++ + +L L+M      + +       S+  L+L   +L 
Sbjct: 177 EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLD 235

Query: 131 GP----IPP----SLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
                 +      SL +    + +++    L  ++ + L ++  L  L+ S N L
Sbjct: 236 TFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQL 289

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 17/94 (18%), Positives = 38/94 (40%), Gaps = 11/94 (11%)

Query: 91  KLERLQYLELYMNNLAGQIPKEL--------GQLKSLISLDLYHNNLTGPIPPSLSRLSN 142
               ++ LEL   +L      EL         +  +  ++ +   +L   +   L+++S 
Sbjct: 220 VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISG 278

Query: 143 LKFLRLNGNKLTGKIPRE-LTKLGNLKILDVSNN 175
           L  L  + N+L   +P     +L +L+ + +  N
Sbjct: 279 LLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 48.6 bits (116), Expect = 4e-07
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 118 SLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
           ++ SLDL +N +T      L R  NL+ L L  N +        + LG+L+ LD+S N L
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112

Query: 178 CGTIPTAGSFSK 189
              +  +  F  
Sbjct: 113 -SNLS-SSWFKP 122

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 11/95 (11%)

Query: 69  NRVTRLDLGNGKLSGNLVPEL--------GKLERLQYLELYMNNLAGQIPKELGQLKSLI 120
           + V  L+L +  L      EL         K    + +++   +L  Q+ K L Q+  L+
Sbjct: 222 SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLL 280

Query: 121 SLDLYHNNLTGPIPPS-LSRLSNLKFLRLNGNKLT 154
            L+   N L   +P     RL++L+ + L+ N   
Sbjct: 281 ELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 62.1 bits (151), Expect = 1e-11
 Identities = 27/113 (23%), Positives = 42/113 (37%), Gaps = 8/113 (7%)

Query: 69  NRVTRLDLGNGKLSGNLVPE--LGKLERLQYLELYMNNLAGQIPKE-LGQLKSLISLDLY 125
           + V   DL   K+    + +        L+ L L  N +  +I       L  L+ L+L 
Sbjct: 275 SGVKTCDLSKSKIFA--LLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLS 331

Query: 126 HNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPREL-TKLGNLKILDVSNNDL 177
            N L          L  L+ L L+ N +   +  +    L NLK L +  N L
Sbjct: 332 QNFLGSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDTNQL 383

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 59.8 bits (145), Expect = 7e-11
 Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 1/96 (1%)

Query: 95  LQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPP-SLSRLSNLKFLRLNGNKL 153
           + Y++L +N++A        +L+ L  L +        I   +   LS+L  L+L+ N+ 
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 154 TGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSK 189
                     L NL++L ++  +L G + +   F  
Sbjct: 92  LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKP 127

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 51.7 bits (124), Expect = 4e-08
 Identities = 23/136 (16%), Positives = 36/136 (26%), Gaps = 7/136 (5%)

Query: 72  TRLDLGNGKLSGNLVPE--LGKLERLQYLELYMNNL-AGQIPKEL-GQLKSLISLDLYHN 127
             L L   +     +       L  L+ L L   NL    +       L SL  L L  N
Sbjct: 82  IILKLDYNQFLQ--LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139

Query: 128 NLTGPIPPSL-SRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGS 186
           N+    P S    +     L L  NK+      +L          +  + +         
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199

Query: 187 FSKFSEESFMNNPRLE 202
                  +   N  + 
Sbjct: 200 LGWEKCGNPFKNTSIT 215

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 48.6 bits (116), Expect = 4e-07
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 121 SLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPREL-TKLGNLKILDVSNNDLCG 179
            +DL  N++      S SRL +L+FL++        I       L +L IL +  N    
Sbjct: 34  YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF-L 92

Query: 180 TIPTAGSFSKFS 191
            +   G+F+  +
Sbjct: 93  QLE-TGAFNGLA 103

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.0 bits (99), Expect = 7e-05
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 9/78 (11%)

Query: 81  LSGNLVPELG-----KLERLQYLELYMNNLAGQIPKEL-GQLKSLISLDLYHNNLTGPIP 134
           LS N +  +       L++L+ L+L  N++   +  +    L +L  L L  N L   +P
Sbjct: 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLKELALDTNQLKS-VP 387

Query: 135 PS-LSRLSNLKFLRLNGN 151
                RL++L+ + L+ N
Sbjct: 388 DGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 41.7 bits (98), Expect = 9e-05
 Identities = 25/166 (15%), Positives = 47/166 (28%), Gaps = 40/166 (24%)

Query: 72  TRLDLGNGKLSGNLVPE--LGKLERLQYLELYMNNLAGQIPKEL-GQLKSLISLDLYHNN 128
             L L    L G ++       L  L+ L L  NN+    P      ++    LDL  N 
Sbjct: 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165

Query: 129 LT----------------------------------GPIPPSLSRLSNLKFLRLNGNKLT 154
           +                                        +  + +++  L L+GN   
Sbjct: 166 VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK 225

Query: 155 GKIPRELTKLGN---LKILDVSNNDLCGTIPTAGSFSKFSEESFMN 197
             + +          ++ L +SN+   G+     +F      +F  
Sbjct: 226 ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.9 bits (151), Expect = 1e-11
 Identities = 26/121 (21%), Positives = 42/121 (34%), Gaps = 22/121 (18%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPK---------------ELGQL 116
             L      L+  L      L+ L      +  L+   P                EL   
Sbjct: 94  ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNS 152

Query: 117 KSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNND 176
             L  +D+ +N+L   +P       +L+F+    N+L  ++P EL  L  L  +   NN 
Sbjct: 153 SFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNS 206

Query: 177 L 177
           L
Sbjct: 207 L 207

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 60.0 bits (146), Expect = 5e-11
 Identities = 18/122 (14%), Positives = 39/122 (31%), Gaps = 19/122 (15%)

Query: 74  LDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQL-------------KSLI 120
               +  L+  +  E   ++         +      P   G+              +   
Sbjct: 16  PLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAH 74

Query: 121 SLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGT 180
            L+L +  L+  +P       +L+ L  + N LT ++P     L +L + + +   L   
Sbjct: 75  ELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDL 129

Query: 181 IP 182
            P
Sbjct: 130 PP 131

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.9 bits (138), Expect = 6e-10
 Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 25/124 (20%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAG------------------QIPKEL 113
             +  GN +L    +PEL  L  L  +    N+L                    +   EL
Sbjct: 176 EFIAAGNNQLEE--LPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPEL 233

Query: 114 GQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVS 173
             L  L ++   +N L   +P       +L+ L +  N LT  +P     L  L + +  
Sbjct: 234 QNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLT-DLPELPQSLTFLDVSENI 288

Query: 174 NNDL 177
            + L
Sbjct: 289 FSGL 292

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.9 bits (138), Expect = 7e-10
 Identities = 21/104 (20%), Positives = 31/104 (29%), Gaps = 18/104 (17%)

Query: 87  PELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLS----- 141
           P       LQ    + +NL  ++P E   +KS        +      PP           
Sbjct: 5   PRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVS 63

Query: 142 --------NLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
                       L LN   L+  +P       +L+ L  S N L
Sbjct: 64  RLRDCLDRQAHELELNNLGLS-SLPEL---PPHLESLVASCNSL 103

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 29/139 (20%), Positives = 46/139 (33%), Gaps = 40/139 (28%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAG-------------------QIPKE 112
             +  GN  L    +PEL  L  L  +    N L                      +P+ 
Sbjct: 218 ESIVAGNNILE--ELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPEL 275

Query: 113 LGQLKSLISLDLYHNNLTGPIPPSLSRL--------------SNLKFLRLNGNKLTGKIP 158
              L  L   +   + L+  +PP+L  L               +L+ L ++ NKL  ++P
Sbjct: 276 PQSLTFLDVSENIFSGLS-ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELP 333

Query: 159 RELTKLGNLKILDVSNNDL 177
                   L+ L  S N L
Sbjct: 334 AL---PPRLERLIASFNHL 349

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 54.2 bits (131), Expect = 6e-09
 Identities = 27/114 (23%), Positives = 39/114 (34%), Gaps = 26/114 (22%)

Query: 81  LSGNLVPEL-GKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSR 139
            S N +  L      L+ L +  N L  ++P    +L+ L       N+L   +P     
Sbjct: 304 ASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNHLAE-VPELPQ- 357

Query: 140 LSNLKFLRLNGNKLTGKIPRELTKL----------------GNLKILDVSNNDL 177
             NLK L +  N L  + P     +                 NLK L V  N L
Sbjct: 358 --NLKQLHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL 408

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 27/106 (25%), Positives = 40/106 (37%), Gaps = 16/106 (15%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
           T LD+       + + EL     L YL    N +   +        SL  L++ +N L  
Sbjct: 280 TFLDVSE--NIFSGLSEL--PPNLYYLNASSNEIR-SLC---DLPPSLEELNVSNNKLIE 331

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
            +P        L+ L  + N L  ++P       NLK L V  N L
Sbjct: 332 -LPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPL 369

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 29/146 (19%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
             L++ N KL    +P L    RL+ L    N+LA ++P+    LK L    + +N L  
Sbjct: 320 EELNVSNNKLIE--LPAL--PPRLERLIASFNHLA-EVPELPQNLKQL---HVEYNPLRE 371

Query: 132 PIPPSLSRL----------------SNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNN 175
             P     +                 NLK L +  N L  + P       +++ L +++ 
Sbjct: 372 -FPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIP---ESVEDLRMNSE 426

Query: 176 DLCGTIPTAGSFSKFSEESFMNNPRL 201
            +      A   +   E+    +   
Sbjct: 427 RVVDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 9/79 (11%), Positives = 26/79 (32%), Gaps = 4/79 (5%)

Query: 76  LGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPP 135
           + + +++ +L       + L+ L +  N L  + P     ++ L    +    +  P   
Sbjct: 379 VEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPESVEDL---RMNSERVVDPYEF 434

Query: 136 SLSRLSNLKFLRLNGNKLT 154
           +      L+      +   
Sbjct: 435 AHETTDKLEDDVFEHHHHH 453

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 11/135 (8%)

Query: 71  VTRLDLGNGKLSGNLVPE-LGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNL 129
           +T + L    +   + P      ++L+ ++L  N ++   P     L+SL SL LY N +
Sbjct: 34  ITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92

Query: 130 TGPIPPSL-SRLSNLKFLRLNGNKLTGKIPREL-TKLGNLKILDVSNNDLCGTIPTAGSF 187
           T  +P SL   L +L+ L LN NK+   +  +    L NL +L + +N L  TI   G+F
Sbjct: 93  TE-LPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKL-QTIA-KGTF 148

Query: 188 SKFSEESFM---NNP 199
           S       M    NP
Sbjct: 149 SPLRAIQTMHLAQNP 163

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.5 bits (129), Expect = 5e-09
 Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 8/111 (7%)

Query: 69  NRVTRLDLGNGKLSGNLVPE--LGKLERLQYLELYMNNLAGQIPKEL-GQLKSLISLDLY 125
            ++ R+DL N ++S   +       L  L  L LY N +  ++PK L   L SL  L L 
Sbjct: 56  KKLRRIDLSNNQISE--LAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLN 112

Query: 126 HNNLTGPIPP-SLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNN 175
            N +   +   +   L NL  L L  NKL        + L  ++ + ++ N
Sbjct: 113 ANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 61.3 bits (148), Expect = 2e-11
 Identities = 21/116 (18%), Positives = 40/116 (34%), Gaps = 8/116 (6%)

Query: 64  TCDADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKE-LGQLKSLISL 122
                + +     G    + + +  L   E L  L +        +    L  L  L +L
Sbjct: 6   CPHGSSGLRCTRDG----ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNL 61

Query: 123 DLYHNNLTGPIPP-SLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
            +  + L   + P +      L  L L+ N L   +  +  +  +L+ L +S N L
Sbjct: 62  TIVKSGLR-FVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.0 bits (116), Expect = 3e-07
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 4/87 (4%)

Query: 70  RVTRLDLGNGKLSGNLVPE-LGKLERLQYLELYMNNLAGQIPKE-LGQLKSLISLDLYHN 127
            +T L + N +   +L    L  L  L+ L +  + L   +  +       L  L+L  N
Sbjct: 32  NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFN 90

Query: 128 NLTGPIPPSLSRLSNLKFLRLNGNKLT 154
            L   +     +  +L+ L L+GN L 
Sbjct: 91  ALES-LSWKTVQGLSLQELVLSGNPLH 116

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 60.1 bits (146), Expect = 2e-11
 Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 9/122 (7%)

Query: 71  VTRLDLGNGKLSGNLVPE--LGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNN 128
              L L N + +  L       KL +L+ +    N +             +  + L  N 
Sbjct: 34  TAELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92

Query: 129 LTGPIPPSL-SRLSNLKFLRLNGNKLTGKIPREL-TKLGNLKILDVSNNDLCGTIPTAGS 186
           L   +   +   L +LK L L  N++T  +  +    L ++++L + +N +  T+   G+
Sbjct: 93  LEN-VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQI-TTVA-PGA 148

Query: 187 FS 188
           F 
Sbjct: 149 FD 150

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 5/96 (5%)

Query: 96  QYLELYMNNLAGQIPK-ELGQLKSLISLDLYHNNLTGPIPP-SLSRLSNLKFLRLNGNKL 153
             L L  N            +L  L  ++  +N +T  I   +    S +  + L  N+L
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD-IEEGAFEGASGVNEILLTSNRL 93

Query: 154 TGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSK 189
                +    L +LK L + +N +   +    SF  
Sbjct: 94  ENVQHKMFKGLESLKTLMLRSNRI-TCVG-NDSFIG 127

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 8/111 (7%)

Query: 69  NRVTRLDLGNGKLSGNLVPE--LGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYH 126
            ++ +++  N K++   + E        +  + L  N L     K    L+SL +L L  
Sbjct: 57  PQLRKINFSNNKITD--IEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRS 114

Query: 127 NNLTGPIPP-SLSRLSNLKFLRLNGNKLTGKIPRE-LTKLGNLKILDVSNN 175
           N +T  +   S   LS+++ L L  N++T  +       L +L  L++  N
Sbjct: 115 NRITC-VGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 59.2 bits (144), Expect = 3e-11
 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 96  QYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTG 155
             L L  N     +PKEL   K L  +DL +N ++     S S ++ L  L L+ N+L  
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 156 KIPRELTKLGNLKILDVSNNDL 177
             PR    L +L++L +  ND+
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDI 114

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 121 SLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGT 180
            L L  N  T  +P  LS   +L  + L+ N+++    +  + +  L  L +S N L   
Sbjct: 35  ELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL-RC 92

Query: 181 IPTAGSFSK 189
           IP   +F  
Sbjct: 93  IP-PRTFDG 100

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 59.7 bits (145), Expect = 8e-11
 Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 13/140 (9%)

Query: 69  NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNN 128
             +T LD  N  ++   +  + KL  L  L    NN+      +L Q  +L  L    N 
Sbjct: 42  ATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNK 96

Query: 129 LTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFS 188
           LT      ++ L+ L +L  + NKLT K+   +++   L  L+ + N L  T       +
Sbjct: 97  LTN---LDVTPLTKLTYLNCDTNKLT-KLD--VSQNPLLTYLNCARNTL--TEIDVSHNT 148

Query: 189 KFSEESFMNNPRLEGPELMG 208
           + +E     N ++   ++  
Sbjct: 149 QLTELDCHLNKKITKLDVTP 168

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 55.5 bits (134), Expect = 3e-09
 Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 16/118 (13%)

Query: 68  DNRVTRLDLGNGK------LSGNLVPEL--GKLERLQYLELYMNNLAGQIPKELGQLKSL 119
            N++T+LD+           + N + E+      +L  L+ ++N    ++   +     L
Sbjct: 115 TNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLD--VTPQTQL 172

Query: 120 ISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
            +LD   N +T      +S+   L  L  + N +T K+   L +   L  LD S+N L
Sbjct: 173 TTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKL 224

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 54.3 bits (131), Expect = 6e-09
 Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 9/110 (8%)

Query: 68  DNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHN 127
           DN  + +       + + +    +L  L  L+ + +++       + +L  L  L    N
Sbjct: 18  DNFASEVAAAFEMQATDTIS-EEQLATLTSLDCHNSSI--TDMTGIEKLTGLTKLICTSN 74

Query: 128 NLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
           N+T      LS+ +NL +L  + NKLT  +   +T L  L  L+   N L
Sbjct: 75  NITT---LDLSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKL 118

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.9 bits (130), Expect = 7e-09
 Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 12/116 (10%)

Query: 68  DNRVTRLDLGNGK------LSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLIS 121
            N +T LD+               + E+      Q +             ++     L  
Sbjct: 242 VNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYL 301

Query: 122 LDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
           LD     +T      LS+   L +L LN  +LT ++   ++    LK L   N  +
Sbjct: 302 LDCQAAGIT---ELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHI 351

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 24/104 (23%), Positives = 36/104 (34%), Gaps = 12/104 (11%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
            RL+     ++     +L +  +L +L+   N L  +I   +  L  L   D   N LT 
Sbjct: 194 NRLNCDTNNITK---LDLNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT- 246

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNN 175
            +  S   LS L  L      L  +I   LT    L        
Sbjct: 247 ELDVST--LSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGC 285

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 21/112 (18%), Positives = 41/112 (36%), Gaps = 15/112 (13%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
             LD     ++  L  +L +  +L YL L    L  ++   +     L SL   + ++  
Sbjct: 300 YLLDCQAAGIT-EL--DLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQD 353

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRE------LTKLGNLKILDVSNNDL 177
               S+ ++  L        +    +P+E      LT   +  +LD   N +
Sbjct: 354 F--SSVGKIPALNNNFEAEGQTI-TMPKETLTNNSLTIAVSPDLLDQFGNPM 402

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.8 bits (143), Expect = 1e-10
 Identities = 29/121 (23%), Positives = 43/121 (35%), Gaps = 7/121 (5%)

Query: 72  TRLDLGNGKLSGNLVPE-LGKLERLQYLELYMNNLAGQIPKEL-GQLKSLISLDLYHNNL 129
             LDL    L  +L          LQ L+L    +   I       L  L +L L  N +
Sbjct: 31  KNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPI 88

Query: 130 TGPIPPSL-SRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFS 188
              +     S LS+L+ L      L       +  L  LK L+V++N +  +      FS
Sbjct: 89  QS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFS 146

Query: 189 K 189
            
Sbjct: 147 N 147

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 57.7 bits (140), Expect = 3e-10
 Identities = 26/124 (20%), Positives = 40/124 (32%), Gaps = 13/124 (10%)

Query: 72  TRLDLGNGKLSGNLVPE--LGKLERLQYLELYMNNLAGQIPKEL-GQLKSLISLDLYHNN 128
             LDL   ++    + +     L  L  L L  N +   +       L SL  L     N
Sbjct: 55  QVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETN 111

Query: 129 LTGPIPPSL-SRLSNLKFLRLNGNKLTGKIPRE--LTKLGNLKILDVSNNDLCGTIPTAG 185
           L   +       L  LK L +  N +          + L NL+ LD+S+N +        
Sbjct: 112 LAS-LENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKI--QSIYCT 167

Query: 186 SFSK 189
               
Sbjct: 168 DLRV 171

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 12/112 (10%)

Query: 72  TRLDLGNGKLSGNLVPELG---KLERLQYLELYMNNLAGQIPKE----LGQLKSL-ISLD 123
             L++ +  +             L  L++L+L  N +   I       L Q+  L +SLD
Sbjct: 127 KELNVAHNLIQS--FKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLD 183

Query: 124 LYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNN 175
           L  N +   I P   +   LK L L+ N+L         +L +L+ + +  N
Sbjct: 184 LSLNPMNF-IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 118 SLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPREL-TKLGNLKILDVSNND 176
           S  +LDL  N L      S      L+ L L+  ++   I       L +L  L ++ N 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87

Query: 177 LCGTIPTAGSFSK 189
           +  ++   G+FS 
Sbjct: 88  I-QSLA-LGAFSG 98

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.4 bits (139), Expect = 3e-10
 Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 8/107 (7%)

Query: 71  VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLT 130
             + +L    ++        +L  +  +    +++   + + +  L ++  L L  N LT
Sbjct: 26  TIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLT 81

Query: 131 GPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
             I P L+ L NL +L L+ NK+   +   L  L  LK L + +N +
Sbjct: 82  D-IKP-LANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGI 124

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 54.3 bits (131), Expect = 4e-09
 Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 8/109 (7%)

Query: 69  NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNN 128
           N + ++   N  +    V  +  L  +  L L  N L   I K L  LK+L  L L  N 
Sbjct: 46  NSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNGNKLT-DI-KPLANLKNLGWLFLDENK 101

Query: 129 LTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
           +   +   L  L  LK L L  N ++  I   L  L  L+ L + NN +
Sbjct: 102 VKD-LSS-LKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKI 146

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.5 bits (129), Expect = 8e-09
 Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 8/106 (7%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
           T+L L   KL+   +  L  L+ L +L L  N +   +   L  LK L SL L HN ++ 
Sbjct: 71  TKLFLNGNKLTD--IKPLANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGISD 126

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
            I   L  L  L+ L L  NK+T  I   L++L  L  L + +N +
Sbjct: 127 -ING-LVHLPQLESLYLGNNKIT-DIT-VLSRLTKLDTLSLEDNQI 168

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 6/89 (6%)

Query: 89  LGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRL 148
                      L   ++   +     +L S+  +   ++++   +   +  L N+  L L
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQG-IQYLPNVTKLFL 75

Query: 149 NGNKLTGKIPRELTKLGNLKILDVSNNDL 177
           NGNKLT  I   L  L NL  L +  N +
Sbjct: 76  NGNKLT-DIK-PLANLKNLGWLFLDENKV 102

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 6/106 (5%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
             L LGN K++   +  L +L +L  L L  N ++  I   L  L  L +L L  N+++ 
Sbjct: 137 ESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHISD 192

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
            +   L+ L NL  L L   +   K     + L     +  ++  L
Sbjct: 193 -LRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 6/104 (5%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
             L L + ++S   +  L  L +LQ L L  N+++    + L  LK+L  L+L+      
Sbjct: 159 DTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLN 214

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNN 175
                 S L     ++     L    P  ++  G+ +  +V  +
Sbjct: 215 KPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWH 256

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 57.3 bits (139), Expect = 3e-10
 Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 10/122 (8%)

Query: 72  TRLDLGNGKLSGNLVPE--LGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNL 129
             L L + KL    +P     +L+ L+ L +  N L         QL +L  L L  N L
Sbjct: 64  RLLYLNDNKLQT--LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL 121

Query: 130 TGPIPPSL-SRLSNLKFLRLNGNKLTGKIPREL-TKLGNLKILDVSNNDLCGTIPTAGSF 187
              +PP +   L+ L +L L  N+L   +P+ +  KL +LK L + NN L   +P  G+F
Sbjct: 122 KS-LPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQL-KRVP-EGAF 177

Query: 188 SK 189
            K
Sbjct: 178 DK 179

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 6/120 (5%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
            +LDL + KLS        +L +L+ L L  N L         +LK+L +L +  N L  
Sbjct: 40  KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99

Query: 132 PIPPSL-SRLSNLKFLRLNGNKLTGKIPREL-TKLGNLKILDVSNNDLCGTIPTAGSFSK 189
            +P  +  +L NL  LRL+ N+L   +P  +   L  L  L +  N+L  ++P  G F K
Sbjct: 100 -LPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNEL-QSLP-KGVFDK 155

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.5 bits (124), Expect = 3e-08
 Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 6/97 (6%)

Query: 95  LQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSL-SRLSNLKFLRLNGNKL 153
            + L+L  N L+    K   +L  L  L L  N L   +P  +   L NL+ L +  NKL
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKL 97

Query: 154 TGKIPREL-TKLGNLKILDVSNNDLCGTIPTAGSFSK 189
              +P  +  +L NL  L +  N L  ++P    F  
Sbjct: 98  Q-ALPIGVFDQLVNLAELRLDRNQL-KSLP-PRVFDS 131

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.7 bits (122), Expect = 5e-08
 Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 8/110 (7%)

Query: 72  TRLDLGNGKLSGNLVPE--LGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNL 129
             L + + KL    +P     +L  L  L L  N L    P+    L  L  L L +N L
Sbjct: 88  ETLWVTDNKLQA--LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145

Query: 130 TGPIPPSL-SRLSNLKFLRLNGNKLTGKIPREL-TKLGNLKILDVSNNDL 177
              +P  +  +L++LK LRL  N+L  ++P     KL  LK L + NN L
Sbjct: 146 QS-LPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQL 193

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 57.3 bits (139), Expect = 4e-10
 Identities = 27/126 (21%), Positives = 46/126 (36%), Gaps = 13/126 (10%)

Query: 72  TRLDLGNGKLSGNLVPE--LGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNL 129
             L L + K+    +    L +  +L  L L  N +       L  L +L  L L +N L
Sbjct: 196 NELHLDHNKIQ--AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL 253

Query: 130 TGPIPPSLSRLSNLKFLRLNGNKLTGKIPRE-------LTKLGNLKILDVSNNDLCGTIP 182
           +  +P  L  L  L+ + L+ N +T K+            K      + + NN +     
Sbjct: 254 SR-VPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV 311

Query: 183 TAGSFS 188
              +F 
Sbjct: 312 QPATFR 317

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 56.6 bits (137), Expect = 7e-10
 Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 6/108 (5%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
             L L N K+S         L +LQ L +  N+L  +IP  L    SL+ L ++ N +  
Sbjct: 81  YALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRK 137

Query: 132 PIPP-SLSRLSNLKFLRLNGNKLT-GKIPRELTKLGNLKILDVSNNDL 177
            +P    S L N+  + + GN L              L  L +S   L
Sbjct: 138 -VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL 184

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 55.0 bits (133), Expect = 3e-09
 Identities = 26/110 (23%), Positives = 41/110 (37%), Gaps = 10/110 (9%)

Query: 72  TRLDLGNGKLSGNLVPE--LGKLERLQYLELYMNNLA-GQIPKELGQLKSLISLDLYHNN 128
             L + + ++    VP+     L  +  +E+  N L              L  L +    
Sbjct: 126 VELRIHDNRIR--KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK 183

Query: 129 LTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRE-LTKLGNLKILDVSNNDL 177
           LTG IP  L     L  L L+ NK+   I  E L +   L  L + +N +
Sbjct: 184 LTG-IPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQI 229

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 5/84 (5%)

Query: 95  LQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPP-SLSRLSNLKFLRLNGNKL 153
           L+ ++     L   +PKE+        LDL +N+++  +       L +L  L L  NK+
Sbjct: 35  LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISE-LRKDDFKGLQHLYALVLVNNKI 90

Query: 154 TGKIPRELTKLGNLKILDVSNNDL 177
           +    +  + L  L+ L +S N L
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHL 114

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 57.6 bits (139), Expect = 4e-10
 Identities = 28/104 (26%), Positives = 54/104 (51%), Gaps = 6/104 (5%)

Query: 89  LGKLERLQYLELYMNNLAGQIPKELGQL-KSLISLDLYHNNLTGPIPPSLSRLSNLKFLR 147
              +  L+ L++ +N+L            +S++ L+L  N LTG +   L     +K L 
Sbjct: 399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLD 456

Query: 148 LNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFS 191
           L+ N++   IP+++T L  L+ L+V++N L  ++P  G F + +
Sbjct: 457 LHNNRIM-SIPKDVTHLQALQELNVASNQL-KSVP-DGVFDRLT 497

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 55.3 bits (133), Expect = 3e-09
 Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 6/98 (6%)

Query: 95  LQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSL-SRLSNLKFLRLNGNKL 153
            + L L  N+++     ++  L  L  L L HN +   +   +     +L++L ++ N+L
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS-LDFHVFLFNQDLEYLDVSHNRL 112

Query: 154 TGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFS 191
              I      + +L+ LD+S ND    +P    F   +
Sbjct: 113 Q-NISC--CPMASLRHLDLSFNDF-DVLPVCKEFGNLT 146

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 53.0 bits (127), Expect = 2e-08
 Identities = 25/110 (22%), Positives = 42/110 (38%), Gaps = 8/110 (7%)

Query: 71  VTRLDLGNGKLSGNLVP-ELGKLERLQYLELYMNNLAGQIPKEL-GQLKSLISLDLYHNN 128
              L L    +S  L   ++  L  L+ L L  N +   +   +    + L  LD+ HN 
Sbjct: 54  TKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNR 111

Query: 129 LTGPIPPSLSRLSNLKFLRLNGNKLTG-KIPRELTKLGNLKILDVSNNDL 177
           L   I      +++L+ L L+ N      + +E   L  L  L +S    
Sbjct: 112 LQN-ISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 52.2 bits (125), Expect = 3e-08
 Identities = 23/134 (17%), Positives = 39/134 (29%), Gaps = 29/134 (21%)

Query: 71  VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLT 130
           +    L         +          +L    N     + +    LK L +L L  N L 
Sbjct: 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

Query: 131 ---------------------------GPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTK 163
                                           + +   ++  L L+ N LTG + R L  
Sbjct: 391 NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP 450

Query: 164 LGNLKILDVSNNDL 177
              +K+LD+ NN +
Sbjct: 451 --KVKVLDLHNNRI 462

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.9 bits (119), Expect = 2e-07
 Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 14/115 (12%)

Query: 72  TRLDLGNGKLSGNLVPE--LGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNL 129
             L L + ++    +        + L+YL++  N L   I      + SL  LDL  N+ 
Sbjct: 79  RVLRLSHNRIRS--LDFHVFLFNQDLEYLDVSHNRLQN-IS--CCPMASLRHLDLSFNDF 133

Query: 130 TG-PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKL------GNLKILDVSNNDL 177
              P+      L+ L FL L+  K        +  L       +L    +   + 
Sbjct: 134 DVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGET 188

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.6 bits (113), Expect = 1e-06
 Identities = 17/113 (15%), Positives = 33/113 (29%), Gaps = 5/113 (4%)

Query: 70  RVTRLDLGNGKLSGNLVPELG-----KLERLQYLELYMNNLAGQIPKELGQLKSLISLDL 124
            V  L++ N  ++  +  E        L+ L    +                  +    L
Sbjct: 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336

Query: 125 YHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
             ++            S+  FL    N  T  + +  + L  L+ L +  N L
Sbjct: 337 SISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL 389

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 23/130 (17%), Positives = 43/130 (33%), Gaps = 7/130 (5%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIP--KELGQLKSLISLDLYHNNL 129
             LD+ + +L    +     +  L++L+L  N+    +P  KE G L  L  L L     
Sbjct: 103 EYLDVSHNRLQN--IS-CCPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKF 158

Query: 130 TGPIPPSLSRLS-NLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFS 188
                  ++ L  +   L L    + G     L       +  V + +   ++    S +
Sbjct: 159 RQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVN 218

Query: 189 KFSEESFMNN 198
                   N 
Sbjct: 219 ALGHLQLSNI 228

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 55.9 bits (135), Expect = 9e-10
 Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 6/120 (5%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
            +LDL +  L+         L +L +L L  N L          L  L +L L +N L  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 132 PIPPSL-SRLSNLKFLRLNGNKLTGKIPREL-TKLGNLKILDVSNNDLCGTIPTAGSFSK 189
            +P  +   L+ L  L L GN+L   +P  +  +L  LK L ++ N L  +IP AG+F K
Sbjct: 98  -LPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQL-QSIP-AGAFDK 153

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.1 bits (120), Expect = 9e-08
 Identities = 38/113 (33%), Positives = 49/113 (43%), Gaps = 8/113 (7%)

Query: 69  NRVTRLDLGNGKLSGNLVPE--LGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYH 126
            ++T L+L   +L    +       L  L  L L  N LA         L  L  L L  
Sbjct: 59  TKLTWLNLDYNQLQT--LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG 116

Query: 127 NNLTGPIPPSL-SRLSNLKFLRLNGNKLTGKIPREL-TKLGNLKILDVSNNDL 177
           N L   +P  +  RL+ LK LRLN N+L   IP     KL NL+ L +S N L
Sbjct: 117 NQLKS-LPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQL 167

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 55.5 bits (134), Expect = 1e-09
 Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 3/107 (2%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
             L L + +++         L  L+ L L  N L          L  L  LDL  N LT 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 132 PIPPSL-SRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
            +P ++  RL +LK L +  NKLT ++PR + +L +L  L +  N L
Sbjct: 103 -LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 54.3 bits (131), Expect = 3e-09
 Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 9/107 (8%)

Query: 71  VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLT 130
             + +LG   ++   +    +L  +Q      +N+  Q    +    +L  L L HN ++
Sbjct: 21  AVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNI--QSLAGMQFFTNLKELHLSHNQIS 76

Query: 131 GPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
             + P L  L+ L+ L +N N+L   +         L  L + NN+L
Sbjct: 77  D-LSP-LKDLTKLEELSVNRNRLK-NL--NGIPSACLSRLFLDNNEL 118

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 17/89 (19%), Positives = 37/89 (41%), Gaps = 6/89 (6%)

Query: 89  LGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRL 148
              L       L   ++   +     +L  + + +  ++N+   +   +   +NLK L L
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQS-LAG-MQFFTNLKELHL 70

Query: 149 NGNKLTGKIPRELTKLGNLKILDVSNNDL 177
           + N+++  +   L  L  L+ L V+ N L
Sbjct: 71  SHNQIS-DLS-PLKDLTKLEELSVNRNRL 97

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 8/100 (8%)

Query: 81  LSGNLVPELGKLE--RLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLS 138
           ++ N +  L  +    L  L L  N L  +    L  LK+L  L + +N L   I   L 
Sbjct: 92  VNRNRLKNLNGIPSACLSRLFLDNNEL--RDTDSLIHLKNLEILSIRNNKLKS-IVM-LG 147

Query: 139 RLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLC 178
            LS L+ L L+GN++T      LT+L  +  +D++     
Sbjct: 148 FLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 6/106 (5%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
           +RL L N +L       L  L+ L+ L +  N L  +    LG L  L  LDL+ N +T 
Sbjct: 109 SRLFLDNNELRD--TDSLIHLKNLEILSIRNNKL--KSIVMLGFLSKLEVLDLHGNEITN 164

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
                L+RL  + ++ L G K   +  +   +L     +   +   
Sbjct: 165 TGG--LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 8/107 (7%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
             L + N KL    +  LG L +L+ L+L+ N +       L +LK +  +DL       
Sbjct: 131 EILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEI--TNTGGLTRLKKVNWIDLTGQKCVN 186

Query: 132 PIPPSLSRLSNLKFLR-LNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
                   L     ++  +G  ++   P  ++  G+     V     
Sbjct: 187 EPVKYQPELYITNTVKDPDGRWIS---PYYISNGGSYVDGCVLWELP 230

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 53.9 bits (130), Expect = 4e-09
 Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 10/130 (7%)

Query: 71  VTRLDLGNGKLSGNLVPE--LGKLERLQYLELYMNNLAGQIPKEL-GQLKSLISLDLYHN 127
              L L    L    +P      L  +  + + ++    Q+       L  +  +++ + 
Sbjct: 33  TQTLKLIETHLR--TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 128 NLTGPIPPS-LSRLSNLKFLRLNGNKLTGKIP--RELTKLGNLKILDVSNNDLCGTIPTA 184
                I P  L  L  LKFL +    L    P   ++       IL++++N    +IP  
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIP-V 148

Query: 185 GSFSKFSEES 194
            +F     E+
Sbjct: 149 NAFQGLCNET 158

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 31/137 (22%), Positives = 50/137 (36%), Gaps = 12/137 (8%)

Query: 72  TRLDLGNGKLSGNLVPELGK---LERLQYLELYMNNLAGQIPKEL--GQLKSLISLDLYH 126
             L + N  L   + P+L K    +    LE+  N     IP     G     ++L LY+
Sbjct: 108 KFLGIFNTGLK--MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165

Query: 127 NNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRE-LTKLGN-LKILDVSNNDLCGTIPTA 184
           N  T  +       + L  + LN NK    I ++    + +   +LDVS   +   +P +
Sbjct: 166 NGFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV-TALP-S 222

Query: 185 GSFSKFSEESFMNNPRL 201
                  E    N   L
Sbjct: 223 KGLEHLKELIARNTWTL 239

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 52.8 bits (127), Expect = 7e-09
 Identities = 34/107 (31%), Positives = 43/107 (40%), Gaps = 2/107 (1%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
           T LDL    L         +L  L  L L  N L         +L SL  L+L  N L  
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90

Query: 132 PIPPSL-SRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
            +P  +  +L+ LK L LN N+L         KL  LK L +  N L
Sbjct: 91  -LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 53.1 bits (128), Expect = 9e-09
 Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 8/110 (7%)

Query: 72  TRLDLGNGKLSGNLVPE--LGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNL 129
           T L L   +L    +P     KL  L+ L L  N L         +L +L  L+L HN L
Sbjct: 88  TYLILTGNQLQS--LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL 145

Query: 130 TGPIPPSL-SRLSNLKFLRLNGNKLTGKIPREL-TKLGNLKILDVSNNDL 177
              +P  +  +L+NL  L L+ N+L   +P  +  KL  LK L +  N L
Sbjct: 146 QS-LPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 12/116 (10%)

Query: 66  DADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELG---QLKSLISL 122
           +  N + ++   N  +    V  +  L  ++YL L  N L      ++    +L +L  L
Sbjct: 38  NELNSIDQIIANNSDIK--SVQGIQYLPNVRYLALGGNKL-----HDISALKELTNLTYL 90

Query: 123 DLYHNNLTGPIPPSL-SRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
            L  N L   +P  +  +L+NLK L L  N+L         KL NL  L++++N L
Sbjct: 91  ILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL 145

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 51.9 bits (125), Expect = 1e-08
 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 5/94 (5%)

Query: 96  QYLELYMNNLAGQIPKEL-GQLKSLISLDLYHNNLTGPIPPSL-SRLSNLKFLRLNGNKL 153
             L L  N L       L G+L  L+ L+L  N LTG I P+     S+++ L+L  NK+
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKI 90

Query: 154 TGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSF 187
                +    L  LK L++ +N +   +   GSF
Sbjct: 91  KEISNKMFLGLHQLKTLNLYDNQI-SCVMP-GSF 122

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.9 bits (127), Expect = 2e-08
 Identities = 27/129 (20%), Positives = 46/129 (35%), Gaps = 9/129 (6%)

Query: 71  VTRLDLGNGKLSGNLVPE--LGKLERLQYLELYMNNLAGQIPKE-LGQLKSLISLDLYHN 127
              L     KL    + +        L+ +E+  N++   I  +    L  L  + +   
Sbjct: 32  AIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 128 NLTGPIPPS-LSRLSNLKFLRLNGNKLTGKIPREL-TKLGNLKILDVSNNDLCGTIPTAG 185
           N    I P     L NL++L ++   +   +P           +LD+ +N    TI    
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIE-RN 147

Query: 186 SFSKFSEES 194
           SF   S ES
Sbjct: 148 SFVGLSFES 156

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.1 bits (99), Expect = 5e-05
 Identities = 17/114 (14%), Positives = 37/114 (32%), Gaps = 6/114 (5%)

Query: 69  NRVTRLDLGNGKLSGNLVPE-LGKLERLQYLELYMNNLAGQIPKE-LGQLKSLISLDLYH 126
             + ++++    +   +  +    L +L  + +   N    I  E    L +L  L + +
Sbjct: 54  GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN 113

Query: 127 NNLTGPIPP-SLSRLSNLKFLRLNGNKLTGKIPRE-LTKL-GNLKILDVSNNDL 177
             +   +P            L +  N     I R     L     IL ++ N +
Sbjct: 114 TGIKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.1 bits (99), Expect = 6e-05
 Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 16/98 (16%)

Query: 108 QIPKELGQLKSLISLDLYHNNLTGPIPP-SLSRLSNLKFLRLNGNKLTGKIPRE-LTKLG 165
           +IP +L   ++ I L      L   I   + S   +L+ + ++ N +   I  +  + L 
Sbjct: 23  EIPSDL--PRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP 79

Query: 166 NLKILDVSN-NDLCGTIPTAGSFSKFSEESFMNNPRLE 202
            L  + +   N+L             + E+F N P L+
Sbjct: 80  KLHEIRIEKANNL----------LYINPEAFQNLPNLQ 107

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 7/87 (8%)

Query: 94  RLQYLELYMNNLAGQIPKE-LGQLKSLISLDLYHNNLTGPIPP-SLSRLSNLKFLRLNGN 151
           +L  L L  NN   ++P +        + LD+    +   +P   L  L  L+       
Sbjct: 178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNL 236

Query: 152 KLTGKIPRELTKLGNLKILDVSNNDLC 178
           K   K+P  L KL  L    ++    C
Sbjct: 237 K---KLPT-LEKLVALMEASLTYPSHC 259

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 48.0 bits (115), Expect = 3e-07
 Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 4/84 (4%)

Query: 96  QYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSL-SRLSNLKFLRLNGNKLT 154
             LEL  N L         +L  L  L L  N +   +P  +  +L+ L  L L+ NKL 
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYLHENKLQ 89

Query: 155 GKIPREL-TKLGNLKILDVSNNDL 177
             +P  +  KL  LK L +  N L
Sbjct: 90  -SLPNGVFDKLTQLKELALDTNQL 112

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 40.7 bits (96), Expect = 9e-05
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 121 SLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGT 180
            L+L  N L         +L+ L  L L+ N++         KL  L IL +  N L  +
Sbjct: 32  RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL-QS 90

Query: 181 IPTAGSFSK 189
           +P  G F K
Sbjct: 91  LP-NGVFDK 98

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 26/125 (20%), Positives = 45/125 (36%), Gaps = 8/125 (6%)

Query: 80  KLSGNLV---PELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPS 136
           KL+  L+    +     R + L+L    +   I      L    ++D   N +   +   
Sbjct: 3   KLTAELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDG- 59

Query: 137 LSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLC--GTIPTAGSFSKFSEES 194
              L  LK L +N N++          L +L  L ++NN L   G +    S    +   
Sbjct: 60  FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 119

Query: 195 FMNNP 199
            + NP
Sbjct: 120 ILRNP 124

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 11/100 (11%)

Query: 81  LSGNLVPELG---KLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGP--IPP 135
            S N + +L     L RL+ L +  N +          L  L  L L +N+L     + P
Sbjct: 49  FSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDP 108

Query: 136 SLSRLSNLKFLRLNGNKLTGKIP--RE--LTKLGNLKILD 171
            L+ L +L +L +  N +T      R   + K+  +++LD
Sbjct: 109 -LASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 25/115 (21%), Positives = 41/115 (35%), Gaps = 14/115 (12%)

Query: 70  RVTRLDLGNGKLS--GNLVPELGKLERLQYLELYMNNLAG-QIPK--ELGQLKSLISLDL 124
           R   LDL   K+    NL   L + + +        + +  +I K      L+ L +L +
Sbjct: 20  RDRELDLRGYKIPVIENLGATLDQFDAI--------DFSDNEIRKLDGFPLLRRLKTLLV 71

Query: 125 YHNNLTGPIPPSLSRLSNLKFLRLNGNKLTG-KIPRELTKLGNLKILDVSNNDLC 178
            +N +          L +L  L L  N L        L  L +L  L +  N + 
Sbjct: 72  NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 48.8 bits (115), Expect = 3e-07
 Identities = 20/141 (14%), Positives = 49/141 (34%), Gaps = 18/141 (12%)

Query: 55  VDPCTWFHVTCDADNRVTRLDLGNGKLSGNLVPELG--KLERLQYLELYM---NNLAGQI 109
           +       +       +  L++ +G L  ++V ++    L  L+ L LY+   +      
Sbjct: 179 IKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGD 238

Query: 110 PKEL------GQLKSLISLDLYHNNLTGPIPPSLSR---LSNLKFLRLNGNKLTGK---- 156
                      +  +L  L +        +         L  L+ + ++   LT +    
Sbjct: 239 MNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARL 298

Query: 157 IPRELTKLGNLKILDVSNNDL 177
           +   + K+ +LK +++  N L
Sbjct: 299 LLDHVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 47.6 bits (112), Expect = 8e-07
 Identities = 19/94 (20%), Positives = 44/94 (46%), Gaps = 8/94 (8%)

Query: 90  GKLERLQYLELYMNNLAGQIPKELGQ---LKSLISLDLYHNNLTG----PIPPSLSRLSN 142
            +   L++L +        + +   +   L  L ++D+    LT      +   + ++ +
Sbjct: 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH 308

Query: 143 LKFLRLNGNKLTGKIPRELTKLGNLKILDVSNND 176
           LKF+ +  N L+ ++ +EL K   +K +DVS++ 
Sbjct: 309 LKFINMKYNYLSDEMKKELQKSLPMK-IDVSDSQ 341

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.9 bits (97), Expect = 7e-05
 Identities = 11/76 (14%), Positives = 32/76 (42%), Gaps = 7/76 (9%)

Query: 70  RVTRLDLGNGKLSGNLVPELGK---LERLQYLELYMNNL----AGQIPKELGQLKSLISL 122
            +  L + + +    +V    +   L +L+ +++    L    A  +   + ++K L  +
Sbjct: 253 NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFI 312

Query: 123 DLYHNNLTGPIPPSLS 138
           ++ +N L+  +   L 
Sbjct: 313 NMKYNYLSDEMKKELQ 328

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 38.8 bits (89), Expect = 9e-04
 Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 14/113 (12%)

Query: 80  KLSGNLVPELGKLERLQYLELYMNNLAGQIPKELG--QLKSLISLDLY--HNNLTGPIPP 135
           K + NL         L+ LE+    L   + +++    L +L  L LY    +       
Sbjct: 180 KGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM 239

Query: 136 -------SLSRLSNLKFLRLNGNKLTGKIPRELTK---LGNLKILDVSNNDLC 178
                  S  R  NLK+L +   +    +     +   L  L+ +D+S   L 
Sbjct: 240 NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT 292

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.4 bits (113), Expect = 4e-07
 Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 4/114 (3%)

Query: 67  ADNRVTRLDLGNGKLSGNLVPELG-KLERLQYLELYMNNLAGQIPKELGQLKSLISLDLY 125
               V  L L N K +   +  L  +   L++L L    L       L +L  L  L+L 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL--ISVSNLPKLPKLKKLELS 79

Query: 126 HNNLTGPIPPSLSRLSNLKFLRLNGNKLTG-KIPRELTKLGNLKILDVSNNDLC 178
            N + G +     +L NL  L L+GNKL        L KL  LK LD+ N ++ 
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 7/124 (5%)

Query: 81  LSGNLVPELGKLERLQYLELYMNNLAGQIPKELG---QLKSLISLDLYHNNLTGPIPPSL 137
           +   +  EL         EL ++N      K  G   +  +L  L L +  L      +L
Sbjct: 10  MKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI--SVSNL 67

Query: 138 SRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLC--GTIPTAGSFSKFSEESF 195
            +L  LK L L+ N++ G +     KL NL  L++S N L    T+              
Sbjct: 68  PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL 127

Query: 196 MNNP 199
            N  
Sbjct: 128 FNCE 131

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 29/121 (23%), Positives = 45/121 (37%), Gaps = 14/121 (11%)

Query: 71  VTRLDLGNGKLSGNLVPELGK-LERLQYLELYMNNL----AGQIPKELGQLKSLISLDLY 125
           +  LD+   +LS     EL   L++ Q + L    L       I   L    +L  L+L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 126 HNNLTGPIPPSLSRL-----SNLKFLRLNGNKLTGK----IPRELTKLGNLKILDVSNND 176
            N L       + +        ++ L L    LTG     +   L  L  L+ L +S+N 
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124

Query: 177 L 177
           L
Sbjct: 125 L 125

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 45.0 bits (107), Expect = 7e-06
 Identities = 29/124 (23%), Positives = 44/124 (35%), Gaps = 18/124 (14%)

Query: 72  TRLDLGNGKLSGNLVPELGKL-----ERLQYLELYMNNL----AGQIPKELGQLKSLISL 122
             L+L + +L    V  + +       ++Q L L    L     G +   L  L +L  L
Sbjct: 59  AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 118

Query: 123 DLYHNNLTGPIPPSLSRL-----SNLKFLRLNGNKLTGK----IPRELTKLGNLKILDVS 173
            L  N L       L          L+ L+L    L+      +   L    + K L VS
Sbjct: 119 HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 178

Query: 174 NNDL 177
           NND+
Sbjct: 179 NNDI 182

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 20/125 (16%), Positives = 42/125 (33%), Gaps = 18/125 (14%)

Query: 71  VTRLDLGNGKLSGNLVPELGKLER-----LQYLELYMNNL----AGQIPKELGQLKSLIS 121
           +  L L +  L    +  L +        L+ L+L   +L       +   L        
Sbjct: 115 LQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKE 174

Query: 122 LDLYHNNLTGP----IPPSLSR-LSNLKFLRLNGNKLTGK----IPRELTKLGNLKILDV 172
           L + +N++       +   L      L+ L+L    +T      +   +    +L+ L +
Sbjct: 175 LTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL 234

Query: 173 SNNDL 177
            +N L
Sbjct: 235 GSNKL 239

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.9 bits (99), Expect = 9e-05
 Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 18/124 (14%)

Query: 72  TRLDLGNGKLSGNLVPELGKL-----ERLQYLELYMNNL----AGQIPKELGQLKSLISL 122
             L + N  ++   V  L +       +L+ L+L    +       +   +    SL  L
Sbjct: 173 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL 232

Query: 123 DLYHNNLTGP-----IPPSLSRLSNLKFLRLNGNKLTGK----IPRELTKLGNLKILDVS 173
            L  N L         P  L   S L+ L +    +T K    + R L    +LK L ++
Sbjct: 233 ALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLA 292

Query: 174 NNDL 177
            N+L
Sbjct: 293 GNEL 296

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 29/125 (23%), Positives = 43/125 (34%), Gaps = 18/125 (14%)

Query: 71  VTRLDLGNGKLSGNLVPELGK-----LERLQYLELYMNNL----AGQIPKELGQLKSLIS 121
           +  L LG+ KL    + EL         RL+ L ++   +     G + + L   +SL  
Sbjct: 229 LRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKE 288

Query: 122 LDLYHNNLTGPIPPSLSRL-----SNLKFLRLNGNKLTGK----IPRELTKLGNLKILDV 172
           L L  N L       L          L+ L +     T          L +   L  L +
Sbjct: 289 LSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQI 348

Query: 173 SNNDL 177
           SNN L
Sbjct: 349 SNNRL 353

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 1e-06
 Identities = 40/227 (17%), Positives = 77/227 (33%), Gaps = 59/227 (25%)

Query: 8   LFHLLVALVLSNTIATSNANVEGDAL-FALRRAVKDPQG-----VLQS-WDPTLVDPCTW 60
           L + +     S +  +SN  +   ++   LRR +K         VL +  +    +    
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA--- 261

Query: 61  FHVTCDADNRV---TR----LDLGNGKLSGNLVPE-----LGKLERLQYLELYMNNLAGQ 108
           F+++C    ++   TR     D  +   + ++  +     L   E    L  Y++     
Sbjct: 262 FNLSC----KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 109 IPKELGQLKSL-ISL--DLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKI-------- 157
           +P+E+       +S+  +   +         L+   N K   +N +KLT  I        
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDG--------LATWDNWK--HVNCDKLTTIIESSLNVLE 367

Query: 158 PRELTKL-GNLKILDVSNNDLCGTIPTA------GSFSKFSEESFMN 197
           P E  K+   L +   S +     IPT           K      +N
Sbjct: 368 PAEYRKMFDRLSVFPPSAH-----IPTILLSLIWFDVIKSDVMVVVN 409

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 4/112 (3%)

Query: 69  NRVTRLDLGNGKLSGNLVPELG-KLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHN 127
           + V  L L N + +   +  L  + E L++L      L   I   L +L  L  L+L  N
Sbjct: 17  SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDN 74

Query: 128 NLTGPIPPSLSRLSNLKFLRLNGNKLTG-KIPRELTKLGNLKILDVSNNDLC 178
            ++G +     +  NL  L L+GNK+        L KL NLK LD+ N ++ 
Sbjct: 75  RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 91  KLERLQYLELYMN-NLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLN 149
               ++ L L  + +  G++     + + L  L   +  LT     +L +L+ LK L L+
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--SIANLPKLNKLKKLELS 72

Query: 150 GNKLTGKIPRELTKLGNLKILDVSNNDLC--GTIPTAGSFSKFSEESFMNNP 199
            N+++G +     K  NL  L++S N +    TI               N  
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 10/111 (9%)

Query: 67  ADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPK--ELGQLKSLISLDL 124
            +     L      +   +   L  L+  ++L L  N     I K   L  +++L  L L
Sbjct: 23  TEAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTN----NIEKISSLSGMENLRILSL 77

Query: 125 YHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNN 175
             N +   I    +    L+ L ++ N++   +   + KL NL++L +SNN
Sbjct: 78  GRNLIKK-IENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNN 125

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.9 bits (104), Expect = 8e-06
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 119 LISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
            + L      +   +  +LS L   K L L+ N +  KI   L+ + NL+IL +  N +
Sbjct: 27  KVELHGMIPPIEK-MDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLI 82

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 10/92 (10%)

Query: 88  ELGKLERLQYLELYMN-NLAGQIPKELGQLKSLISLDLYHNNLT---GPIPPSLSRLSNL 143
           +       + +EL+       ++   L  LK+   L L  NN+          LS + NL
Sbjct: 18  KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-----LSGMENL 72

Query: 144 KFLRLNGNKLTGKIPRELTKLGNLKILDVSNN 175
           + L L  N +  KI         L+ L +S N
Sbjct: 73  RILSLGRNLIK-KIENLDAVADTLEELWISYN 103

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 7/126 (5%)

Query: 81  LSGNLVPE---LGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSL 137
           LS N + +   L  +E L+ L L  N +  +I        +L  L + +N +   +   +
Sbjct: 55  LSTNNIEKISSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LSG-I 111

Query: 138 SRLSNLKFLRLNGNKLTG-KIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFM 196
            +L NL+ L ++ NK+T      +L  L  L+ L ++ N L        + S++  E   
Sbjct: 112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171

Query: 197 NNPRLE 202
             P L+
Sbjct: 172 RLPNLK 177

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 17/106 (16%)

Query: 81  LSGNLVPELGKLE----RLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIP-P 135
           L  NL+ ++  L+     L+ L +  N +       + +L +L  L + +N +T      
Sbjct: 77  LGRNLIKKIENLDAVADTLEELWISYNQI--ASLSGIEKLVNLRVLYMSNNKITNWGEID 134

Query: 136 SLSRLSNLKFLRLNGNKLTGKIPRE----------LTKLGNLKILD 171
            L+ L  L+ L L GN L                 + +L NLK LD
Sbjct: 135 KLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 18/115 (15%), Positives = 36/115 (31%), Gaps = 13/115 (11%)

Query: 76  LGNGKLSGNLVPELGKLERLQYLELYMNNL----AGQIPKELGQLKSLISLDLYHNNLT- 130
           +        +  +      L+ +    N L      +  K     + L ++ +  N +  
Sbjct: 142 IARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP 201

Query: 131 ----GPIPPSLSRLSNLKFLRLNGNKLTGK----IPRELTKLGNLKILDVSNNDL 177
                 +   L+    LK L L  N  T      +   L    NL+ L +++  L
Sbjct: 202 EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 256

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 21/57 (36%), Positives = 27/57 (47%)

Query: 121 SLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
            L L +N +T   P     L NL+ L  N NKLT        KL  L  LD+++N L
Sbjct: 37  RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 41.1 bits (97), Expect = 7e-05
 Identities = 20/56 (35%), Positives = 27/56 (48%)

Query: 122 LDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
           L LY N +T   P    RL+ L  L L+ N+LT        KL  L  L +++N L
Sbjct: 35  LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 39.2 bits (91), Expect = 4e-04
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 103 NNLAGQIPKELGQLKSLISLDLYHNNLTG--PIPPSLSRLSNLKFLRLNGNKLTGKIPRE 160
           + +A  +      +  L+SL+L +N L     +   + +  NLK L L+GN+L  K  RE
Sbjct: 156 SCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL--KSERE 213

Query: 161 LTKLGNLKI--LDVSNNDLCGTIPTAGSF 187
           L K+  LK+  L +  N LC T     ++
Sbjct: 214 LDKIKGLKLEELWLDGNSLCDTFRDQSTY 242

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	218
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-09
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-08
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	4e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	7e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	7e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	9e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	1e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-05
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	2e-05
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	5e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.004
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	5e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	3e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	4e-04

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 71.7 bits (174), Expect = 2e-15
 Identities = 54/162 (33%), Positives = 77/162 (47%), Gaps = 10/162 (6%)

Query: 29  EGDALFALRRAVKDPQGVLQSWDPTLVDPC--TWFHVTCDADN---RVTRLDLGNGKLSG 83
           +  AL  +++ + +P   L SW PT  D C  TW  V CD D    RV  LDL    L  
Sbjct: 7   DKQALLQIKKDLGNP-TTLSSWLPT-TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPK 64

Query: 84  N--LVPELGKLERLQYLELYMN-NLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRL 140
              +   L  L  L +L +    NL G IP  + +L  L  L + H N++G IP  LS++
Sbjct: 65  PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124

Query: 141 SNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIP 182
             L  L  + N L+G +P  ++ L NL  +    N + G IP
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 68.6 bits (166), Expect = 2e-14
 Identities = 24/59 (40%), Positives = 35/59 (59%)

Query: 148 LNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLEGPEL 206
           L  N++ G +P+ LT+L  L  L+VS N+LCG IP  G+  +F   ++ NN  L G  L
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 67.5 bits (163), Expect = 5e-14
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 123 DLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNND-LCG 179
           DL +N + G +P  L++L  L  L ++ N L G+IP +   L    +   +NN  LCG
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCG 306

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 64.0 bits (154), Expect = 9e-13
 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 96  QYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTG 155
             L+L  N + G +P+ L QLK L SL++  NNL G I P    L          NK   
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNKCLC 305

Query: 156 KIP 158
             P
Sbjct: 306 GSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 59.0 bits (141), Expect = 4e-11
 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 2/82 (2%)

Query: 58  CTWFHVTCDADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLK 117
             +          +  LDL N ++ G L   L +L+ L  L +  NNL G+IP + G L+
Sbjct: 233 LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQ 291

Query: 118 SLISLDLYHNN-LTGPIPPSLS 138
                   +N  L G   P+ +
Sbjct: 292 RFDVSAYANNKCLCGSPLPACT 313

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 72.0 bits (175), Expect = 2e-15
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 92  LERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGN 151
           L+ L YL LY NN++   P  +  L  L  L   +N ++     SL+ L+N+ +L    N
Sbjct: 306 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHN 361

Query: 152 KLTGKIPRELTKLGNLKILDVSNN 175
           +++   P  L  L  +  L +++ 
Sbjct: 362 QISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 65.8 bits (159), Expect = 3e-13
 Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 6/94 (6%)

Query: 58  CTWFHVTCDADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLK 117
                        +T L L    +S   +  +  L +LQ L    N ++      L  L 
Sbjct: 296 QLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFANNKVSD--VSSLANLT 351

Query: 118 SLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGN 151
           ++  L   HN ++   P  L+ L+ +  L LN  
Sbjct: 352 NINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 64.6 bits (156), Expect = 6e-13
 Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 26/129 (20%)

Query: 74  LDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIP--------------------KEL 113
           LDL N ++S   +  L  L +L  L+L  N ++   P                      +
Sbjct: 246 LDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI 303

Query: 114 GQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVS 173
             LK+L  L LY NN++   P  +S L+ L+ L    NK++      L  L N+  L   
Sbjct: 304 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAG 359

Query: 174 NNDLCGTIP 182
           +N +    P
Sbjct: 360 HNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 5e-08
 Identities = 38/171 (22%), Positives = 60/171 (35%), Gaps = 28/171 (16%)

Query: 58  CTWFHVTCDADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLK 117
                        +  L   N ++S   +  LG L  L  L L  N L       L  L 
Sbjct: 186 KVSDISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD--IGTLASLT 241

Query: 118 SLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIP------------------- 158
           +L  LDL +N ++   P  LS L+ L  L+L  N+++   P                   
Sbjct: 242 NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED 299

Query: 159 -RELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLEGPELMG 208
              ++ L NL  L +  N++    P   S +K     F NN ++     + 
Sbjct: 300 ISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANN-KVSDVSSLA 348

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 3e-06
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 6/87 (6%)

Query: 92  LERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGN 151
           L       L   N+   + +    L  + +L      +       +  L+NL  +  + N
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNN 76

Query: 152 KLTGKIPRELTKLGNLKILDVSNNDLC 178
           +LT   P  L  L  L  + ++NN + 
Sbjct: 77  QLTDITP--LKNLTKLVDILMNNNQIA 101

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 2e-05
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 116 LKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNN 175
           L   +   L   N+T  +  S + L  +  L+ +   +   I   +  L NL  ++ SNN
Sbjct: 21  LAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNN 76

Query: 176 DLCGTIP 182
            L    P
Sbjct: 77  QLTDITP 83

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 1e-04
 Identities = 13/76 (17%), Positives = 29/76 (38%), Gaps = 6/76 (7%)

Query: 71  VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLT 130
             +  LG   ++         L+++  L+     +  +    +  L +L  ++  +N LT
Sbjct: 24  KMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLT 79

Query: 131 GPIPPSLSRLSNLKFL 146
              P  L  L+ L  +
Sbjct: 80  DITP--LKNLTKLVDI 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (127), Expect = 3e-09
 Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 13/89 (14%)

Query: 95  LQYLELYMNNL----AGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSR-----LSNLKF 145
           L+ L L   ++       +   L    SL  LDL +N L       L          L+ 
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430

Query: 146 LRLNGNKLTGKIPRELTKLG----NLKIL 170
           L L     + ++   L  L     +L+++
Sbjct: 431 LVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (125), Expect = 6e-09
 Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 10/94 (10%)

Query: 95  LQYLELYMNNLAGQIPKEL-GQLKSLISLDLYHNNLTG----PIPPSLSRLSNLKFLRLN 149
           +Q L++    L+     EL   L+    + L    LT      I  +L     L  L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 150 GNKLTGKIPRELTKL-----GNLKILDVSNNDLC 178
            N+L       + +        ++ L + N  L 
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (117), Expect = 7e-08
 Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 10/91 (10%)

Query: 71  VTRLDLGNGKLSGNLVPEL-GKLERLQYLELYMNNL----AGQIPKELGQLKSLISLDLY 125
           +  LD+   +LS     EL   L++ Q + L    L       I   L    +L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 126 HNNLTGPIPPSLSRL-----SNLKFLRLNGN 151
            N L       + +        ++ L L   
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 8e-08
 Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 5/72 (6%)

Query: 118 SLISLDLYHNNLT-GPIPPSLSRLSNLKFLRLNGNKLTGK----IPRELTKLGNLKILDV 172
            + SLD+    L+       L  L   + +RL+   LT      I   L     L  L++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 173 SNNDLCGTIPTA 184
            +N+L       
Sbjct: 63  RSNELGDVGVHC 74

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 5e-07
 Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 15/94 (15%)

Query: 117 KSLISLDLYHNNLTG----PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTK-----LGNL 167
             L  L L   +++      +  +L    +L+ L L+ N L      +L +        L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 168 KILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRL 201
           + L + +      +          +    + P L
Sbjct: 429 EQLVLYDIYWSEEME------DRLQALEKDKPSL 456

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 5e-09
 Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 3/101 (2%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
             LDL    L  ++   L     +       + +   + +     + +  +DL ++ +  
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEV 60

Query: 132 -PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILD 171
             +   LS+ S L+ L L G +L+  I   L K  NL  L+
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 101

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.9 bits (125), Expect = 6e-09
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 8/78 (10%)

Query: 100 LYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPR 159
            Y+N  + +I        SL  L++ +N L   +P        L+ L  + N L  ++P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE 321

Query: 160 ELTKLGNLKILDVSNNDL 177
                 NLK L V  N L
Sbjct: 322 L---PQNLKQLHVEYNPL 336

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 3e-04
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 8/63 (12%)

Query: 117 KSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNND 176
           +    L+L +  L+  +P       +L+ L  + N LT ++P       +LK L V NN+
Sbjct: 38  RQAHELELNNLGLSS-LPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNN 89

Query: 177 LCG 179
           L  
Sbjct: 90  LKA 92

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.7 bits (125), Expect = 6e-09
 Identities = 23/107 (21%), Positives = 45/107 (42%), Gaps = 3/107 (2%)

Query: 95  LQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLT 154
              L+L  N +      +   LK+L +L L +N ++   P + + L  L+ L L+ N+L 
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 155 GKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRL 201
             +P ++ K   L+ L V  N++     +  +         +    L
Sbjct: 93  E-LPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL 136

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.6 bits (109), Expect = 6e-07
 Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 3/111 (2%)

Query: 91  KLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNG 150
               +  L       +G        +K L  + +   N+T  IP  L    +L  L L+G
Sbjct: 124 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDG 180

Query: 151 NKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRL 201
           NK+T      L  L NL  L +S N +      + + +    E  +NN +L
Sbjct: 181 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 231

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.9 bits (97), Expect = 3e-05
 Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 7/112 (6%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
           T L L   K++      L  L  L  L L  N+++      L     L  L L +N L  
Sbjct: 174 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV- 232

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTG------KIPRELTKLGNLKILDVSNNDL 177
            +P  L+    ++ + L+ N ++         P   TK  +   + + +N +
Sbjct: 233 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.6 bits (96), Expect = 3e-05
 Identities = 32/126 (25%), Positives = 48/126 (38%), Gaps = 3/126 (2%)

Query: 74  LDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPI 133
           L     K SG        +++L Y+ +   N+   IP+  G   SL  L L  N +T   
Sbjct: 131 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQ--GLPPSLTELHLDGNKITKVD 187

Query: 134 PPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEE 193
             SL  L+NL  L L+ N ++      L    +L+ L ++NN L                
Sbjct: 188 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVV 247

Query: 194 SFMNNP 199
              NN 
Sbjct: 248 YLHNNN 253

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.7 bits (118), Expect = 9e-09
 Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 6/107 (5%)

Query: 74  LDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPI 133
           L L +  L+   +  L +L  + +L+L  N L    P  L  L+ L  L    N      
Sbjct: 3   LHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNA--LEN 57

Query: 134 PPSLSRLSNLKFLRLNGNKLTG-KIPRELTKLGNLKILDVSNNDLCG 179
              ++ L  L+ L L  N+L      + L     L +L++  N LC 
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.9 bits (115), Expect = 7e-08
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 113 LGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDV 172
           L  L  L +L    N ++   P  L+ L NL  + L  N+++   P  L    NL I+ +
Sbjct: 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

Query: 173 SN 174
           +N
Sbjct: 225 TN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 1e-06
 Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 4/100 (4%)

Query: 50  WDPTLVDPCTWFHVTCDADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQI 109
               L                     L  G    + +  L  L +L  L+   N ++   
Sbjct: 130 NLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS 189

Query: 110 PKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLN 149
           P  L  L +LI + L +N ++   P  L+  SNL  + L 
Sbjct: 190 P--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.6 bits (104), Expect = 2e-06
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 115 QLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSN 174
            L + I +    +N+T  +  + + L  +  L   G  +T  I   +  L NL  L++ +
Sbjct: 17  ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKD 72

Query: 175 NDLC 178
           N + 
Sbjct: 73  NQIT 76

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 92  LERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGN 151
           L     +    +N+   + +    L  + +L  +   +T      +  L+NL  L L  N
Sbjct: 18  LANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDN 73

Query: 152 KL 153
           ++
Sbjct: 74  QI 75

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 2/41 (4%)

Query: 86  VPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYH 126
           +  L  L  L  + L  N ++   P  L    +L  + L +
Sbjct: 188 ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 6e-07
 Identities = 29/142 (20%), Positives = 42/142 (29%), Gaps = 1/142 (0%)

Query: 72  TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG 131
             L L    L          L  LQYL L  N L          L +L  L L+ N ++ 
Sbjct: 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167

Query: 132 PIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNN-DLCGTIPTAGSFSKF 190
               +   L +L  L L+ N++    P     LG L  L +  N                
Sbjct: 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227

Query: 191 SEESFMNNPRLEGPELMGFVRY 212
                 +NP +          +
Sbjct: 228 QYLRLNDNPWVCDCRARPLWAW 249

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 4e-06
 Identities = 32/139 (23%), Positives = 46/139 (33%), Gaps = 1/139 (0%)

Query: 47  LQSWDPTLVDPCTWFHVTCDADNRVTRLDLGNGKLSGNLVP-ELGKLERLQYLELYMNNL 105
           L                       + +LDL +     ++ P     L RL  L L    L
Sbjct: 58  LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 117

Query: 106 AGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLG 165
               P     L +L  L L  N L      +   L NL  L L+GN+++    R    L 
Sbjct: 118 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177

Query: 166 NLKILDVSNNDLCGTIPTA 184
           +L  L +  N +    P A
Sbjct: 178 SLDRLLLHQNRVAHVHPHA 196

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 6e-06
 Identities = 23/131 (17%), Positives = 40/131 (30%), Gaps = 28/131 (21%)

Query: 73  RLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLK--------------- 117
            L L   ++S         L  L  L L+ N +A   P     L                
Sbjct: 157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 216

Query: 118 ---------SLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLK 168
                    +L  L L  N        +    + L+  R + +++   +P+ L       
Sbjct: 217 PTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQRLA---GRD 272

Query: 169 ILDVSNNDLCG 179
           +  ++ NDL G
Sbjct: 273 LKRLAANDLQG 283

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 1e-06
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 112 ELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILD 171
           E+ ++ S + ++    NLT  +PP L +  +   L L+ N L       L     L  L+
Sbjct: 5   EVSKVASHLEVNCDKRNLTA-LPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 172 VSNNDLC 178
           +   +L 
Sbjct: 62  LDRAELT 68

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 7e-06
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 101 YMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKL 153
             NNL       L  L++L +L L  N+L   IP        L F  L+GN  
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 2e-05
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 88  ELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLR 147
           E+ K+     +     NL   +P +L   K    L L  N L      +L   + L  L 
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 148 LNGNK 152
           L+  +
Sbjct: 62  LDRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 1e-04
 Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 125 YHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDL 177
            +NNLT      L+ L NL  L L  N L   IP+       L    +  N  
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.9 bits (104), Expect = 3e-06
 Identities = 14/108 (12%), Positives = 35/108 (32%), Gaps = 8/108 (7%)

Query: 118 SLISLDLYHNNLTG----PIPPSLSRLSNLKFLRLNGNKLTGK----IPRELTKLGNLKI 169
           S+    L  + +T      +   L    ++K + L+GN +  +    +   +    +L+I
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 170 LDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLEGPELMGFVRYDVGDC 217
            + S+              +   ++ +  P+L    L           
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE 111

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.1 bits (102), Expect = 5e-06
 Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 19/91 (20%)

Query: 100 LYMNNLAGQIPKELGQ------LKSLISLDLYHNNLTGPIPPSL-----SRLSNLKFLRL 148
           L    L+ +    +           L +L L +N +      +L      ++ +L FL L
Sbjct: 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 309

Query: 149 NGNKLT--GKIPRELTKL------GNLKILD 171
           NGN+ +    +  E+ ++      G L  LD
Sbjct: 310 NGNRFSEEDDVVDEIREVFSTRGRGELDELD 340

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.3 bits (87), Expect = 4e-04
 Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 11/65 (16%)

Query: 124 LYHNNLTGPIPPSLSR------LSNLKFLRLNGNKLTGKIPREL-----TKLGNLKILDV 172
           L    L+     ++           L+ LRL  N++     R L      K+ +L  L++
Sbjct: 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 309

Query: 173 SNNDL 177
           + N  
Sbjct: 310 NGNRF 314

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 36.8 bits (83), Expect = 0.001
 Identities = 15/109 (13%), Positives = 30/109 (27%), Gaps = 10/109 (9%)

Query: 48  QSWDPTLVDPCTWFHVTCDADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAG 107
            S     +            D  ++    G   +         +   LQ L L  N +  
Sbjct: 232 SSALAIALKSWPNLRELGLNDCLLS--ARGAAAVVDAF--SKLENIGLQTLRLQYNEIEL 287

Query: 108 QIPKEL-----GQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGN 151
              + L      ++  L+ L+L  N  +      +  +  +   R  G 
Sbjct: 288 DAVRTLKTVIDEKMPDLLFLELNGNRFSE-EDDVVDEIREVFSTRGRGE 335

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 36.8 bits (83), Expect = 0.001
 Identities = 8/80 (10%), Positives = 21/80 (26%), Gaps = 4/80 (5%)

Query: 103 NNLAGQIPKELGQLKSLISLDLYHNNLTGP----IPPSLSRLSNLKFLRLNGNKLTGKIP 158
                 +   L +  S+  + L  N +       +  +++   +L+    +         
Sbjct: 17  TEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKD 76

Query: 159 RELTKLGNLKILDVSNNDLC 178
                L  L    +    L 
Sbjct: 77  EIPEALRLLLQALLKCPKLH 96

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 7e-06
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 92  LERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGN 151
                   L   ++   + +   +L S+  +   ++++       +  L N+  L LNGN
Sbjct: 23  FAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN 78

Query: 152 KLTG 155
           KLT 
Sbjct: 79  KLTD 82

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 2e-05
 Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 115 QLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSN 174
                I  +L   ++T  +  + + L+++  +  N + +       +  L N+  L ++ 
Sbjct: 22  AFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77

Query: 175 NDLCGTIPTAG 185
           N L    P A 
Sbjct: 78  NKLTDIKPLAN 88

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 3e-04
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 125 YHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSN 174
              +        L+ L+ L+ L L+ N ++    R L  L NL +L++ +
Sbjct: 162 SLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 7e-04
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 112 ELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNG 150
            L  L  L +L L  N+++     +L+ L NL  L L  
Sbjct: 173 PLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFS 209

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 9e-06
 Identities = 11/103 (10%), Positives = 20/103 (19%)

Query: 50  WDPTLVDPCTWFHVTCDADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQI 109
               +       +           L L    +           +  +      NNL    
Sbjct: 134 IQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELP 193

Query: 110 PKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNK 152
                     + LD+    +       L  L  L+       K
Sbjct: 194 NDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 2e-04
 Identities = 14/88 (15%), Positives = 23/88 (26%), Gaps = 3/88 (3%)

Query: 96  QYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTG 155
             L L  N +           +        +NNL           S    L ++  ++  
Sbjct: 156 VILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 215

Query: 156 KIPRELTKLGNLKILDVSNNDLCGTIPT 183
                L  L  L+     N      +PT
Sbjct: 216 LPSYGLENLKKLRARSTYN---LKKLPT 240

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 1e-05
 Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 3/122 (2%)

Query: 87  PELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTG--PIPPSLSRLSNLK 144
           P+L        L    +++A  +      +  L+SL+L +N L     +   + +  NLK
Sbjct: 36  PDLVAQNIDVVLNR-RSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLK 94

Query: 145 FLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLEGP 204
            L L+GN+L  +   +  K   L+ L +  N L  T     ++     E F    RL+G 
Sbjct: 95  ILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLDGH 154

Query: 205 EL 206
           EL
Sbjct: 155 EL 156

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 41.7 bits (96), Expect = 2e-05
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 5/129 (3%)

Query: 50  WDPTLVDPCTWFHVTCDADNRVTRLDLGNGKLSGNLVPE-LGKLERLQYLELYMNNLAGQ 108
                 +  T             +           +  +    L +L+ L LY N ++  
Sbjct: 58  KLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV 117

Query: 109 IPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLK 168
           +P     L SL SL+L  N        +      L+   LNG       P   +K+ +++
Sbjct: 118 MPGSFEHLNSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAP---SKVRDVQ 173

Query: 169 ILDVSNNDL 177
           I D+ +++ 
Sbjct: 174 IKDLPHSEF 182

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.6 bits (96), Expect = 2e-05
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 116 LKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNN 175
           L   +   L   N+T  +  S + L  +  L+ +   +   I   +  L NL  ++ SNN
Sbjct: 17  LAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNN 72

Query: 176 DLCG 179
            L  
Sbjct: 73  QLTD 76

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 5e-04
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 110 PKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFL 146
            K L  L +L  LD+  N ++      L++L+NL+ L
Sbjct: 165 LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 34.6 bits (78), Expect = 0.004
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 125 YHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKIL 170
             N +T   P  L+ L+ L+ L ++ NK++      L KL NL+ L
Sbjct: 158 SSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESL 199

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 40.4 bits (93), Expect = 5e-05
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 8/74 (10%)

Query: 111 KELGQLKSLISLDLYHNNLTGPIPP------SLSRLSNLKFLRLNGNKLTGKIPRELTKL 164
           +   + KS+++ +     L G IPP      +LS L   K L L+ N +  KI   L+ +
Sbjct: 12  RIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSGM 69

Query: 165 GNLKILDVSNNDLC 178
            NL+IL +  N + 
Sbjct: 70  ENLRILSLGRNLIK 83

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 1e-04
 Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 1/44 (2%)

Query: 135 PSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLC 178
              +     + L L G K+   I      L     +D S+N++ 
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR 54

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 3e-04
 Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 6/82 (7%)

Query: 80  KLSGNLV---PELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPS 136
           KL+  L+    +     R + L+L    +   I      L    ++D   N +       
Sbjct: 2   KLTAELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDG 58

Query: 137 LSRLSNLKFLRLNGNKLTGKIP 158
              L  LK L +N N++     
Sbjct: 59  FPLLRRLKTLLVNNNRICRIGE 80

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 4e-04
 Identities = 20/111 (18%), Positives = 32/111 (28%), Gaps = 1/111 (0%)

Query: 103 NNLAGQIPKELGQLKSLISLDLYHNNLTGPIPP-SLSRLSNLKFLRLNGNKLTGKIPREL 161
            + A      L   ++L  L + +      +    L  L  L+ L +  + L    P   
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 162 TKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLEGPELMGFVRY 212
                L  L++S N L              E     NP      L    R+
Sbjct: 77  HFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRW 127

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	218
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.87
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.85
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.84
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.82
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.8
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.72
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.72
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.71
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.71
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.7
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.68
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.67
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.58
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.58
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.57
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.57
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.55
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.5
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.43
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.42
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.38
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.26
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.19
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.14
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.1
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.07
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.93
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.82
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.78
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.72
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.67
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.15
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.69
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.31
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.98

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=3.7e-37  Score=177.73  Aligned_cols=157  Identities=35%  Similarity=0.606  Sum_probs=115.6

Q ss_pred             CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC--CCCEEEECCC---CCEEEEECCCCCCCC--CCCCCCCCCCCCCE
Q ss_conf             9802799999999955899999889999999998--7431573999---978999839999731--16845679999988
Q 027850           25 NANVEGDALFALRRAVKDPQGVLQSWDPTLVDPC--TWFHVTCDAD---NRVTRLDLGNGKLSG--NLVPELGKLERLQY   97 (218)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~c--~~~gv~c~~~---~~l~~L~Ls~~~l~~--~~~~~~~~l~~L~~   97 (218)
                      +.++|++||.+||+++.++. .+.+|... .++|  .|.||+|+..   .+|+.|+++++.+.+  .+|..+..++.|++
T Consensus         3 c~~~e~~aLl~~k~~~~~~~-~l~sW~~~-~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~   80 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLGNPT-TLSSWLPT-TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF   80 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTCCG-GGTTCCTT-SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred             CCHHHHHHHHHHHHHCCCCC-CCCCCCCC-CCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCHHHHCCCCCCC
T ss_conf             89899999999999779998-67788999-99988948896974899947988998989988888879847846753352


Q ss_pred             EECCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEEEECCC
Q ss_conf             97337-85787788000268889889733885789996137899999989811884888898110289999999814781
Q 027850           98 LELYM-NNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNND  176 (218)
Q Consensus        98 L~L~~-n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~  176 (218)
                      |++++ |.+.+.+|..+..+++|++|++++|++.+..+..+..+..|+.++++.|.+.+.+|..+..++.++.+++++|.
T Consensus        81 L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~  160 (313)
T d1ogqa_          81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR  160 (313)
T ss_dssp             EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCC
T ss_conf             02026543330024311454200110203564344332222201110011112245555685122067400000023553


Q ss_pred             CCCCCCC
Q ss_conf             4413899
Q 027850          177 LCGTIPT  183 (218)
Q Consensus       177 l~~~~~~  183 (218)
                      +.+.+|.
T Consensus       161 l~~~ip~  167 (313)
T d1ogqa_         161 ISGAIPD  167 (313)
T ss_dssp             CEEECCG
T ss_pred             CCCCCCC
T ss_conf             3562031

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.3e-22  Score=113.54  Aligned_cols=138  Identities=27%  Similarity=0.206  Sum_probs=85.0

Q ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf             89998399997311684567999998897337857877880002688898897338857899961378999999898118
Q 027850           71 VTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNG  150 (218)
Q Consensus        71 l~~L~Ls~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~  150 (218)
                      ++.|++++|.+.. .+..+..++.|+.|+++++.+....+..+..+..++.+++++|.+....+..+..++.++.+++++
T Consensus        79 L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~  157 (266)
T d1p9ag_          79 LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN  157 (266)
T ss_dssp             CCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHCCCCC
T ss_conf             2111112222211-111212222222222222311011001122221111221243421022123332211100000001


Q ss_pred             CCCCCCCCHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             84888898110289999999814781441389999877778102347878889886676
Q 027850          151 NKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLEGPELMGF  209 (218)
Q Consensus       151 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~l~l~~N~~l~~~~~~~~  209 (218)
                      |++++..+..+..+++|++|++++|+++..++....+++|+.+++++||..|++++.++
T Consensus       158 N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~CdC~~~~l  216 (266)
T d1p9ag_         158 NNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYF  216 (266)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSGGGHHH
T ss_pred             CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCHHHH
T ss_conf             56522372001342124234301397855686677788899998369998788643799

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.89  E-value=7.3e-23  Score=114.67  Aligned_cols=124  Identities=25%  Similarity=0.311  Sum_probs=69.7

Q ss_pred             CCCCCCEEEECC----------CCCEEEEECCCCCCCCC-CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf             998743157399----------99789998399997311-6845679999988973378578778800026888988973
Q 027850           56 DPCTWFHVTCDA----------DNRVTRLDLGNGKLSGN-LVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDL  124 (218)
Q Consensus        56 ~~c~~~gv~c~~----------~~~l~~L~Ls~~~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l  124 (218)
                      +.|.+..|.|..          +.+++.|++++|.+... .+..|..+++|+.|++++|.+....+..+..++.|++|++
T Consensus         6 C~C~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_           6 CHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             SEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf             89769999970899670298989787889848987755302002578762721301363221212122211222210100


Q ss_pred             CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEEEECCCCCC
Q ss_conf             3885789996137899999989811884888898110289999999814781441
Q 027850          125 YHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCG  179 (218)
Q Consensus       125 s~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  179 (218)
                      ++|++....+..|.++++|++|++++|+++...+..|..+++|+++++++|.+..
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCC
T ss_conf             3553443497998079746552457745353597785687533420003644343

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=7.3e-23  Score=114.69  Aligned_cols=140  Identities=23%  Similarity=0.210  Sum_probs=114.4

Q ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf             97899983999973116845679999988973378578778800026888988973388578999613789999998981
Q 027850           69 NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRL  148 (218)
Q Consensus        69 ~~l~~L~Ls~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l  148 (218)
                      .+++.++++++.+....+..+.....|+.+++++|.+.+..+..|..++.|+.+++++|.+....+..+..+++|+.+++
T Consensus       105 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l  184 (284)
T d1ozna_         105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL  184 (284)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCCCCCCCCCCCCHHCCCCHHHHCCCCCCCCCHHHHCCCCCHHHCCCCCCCCCCCCHHHHCCCCCCCHHHH
T ss_conf             02778756885443201353320001211020014314458057404340502231417656625666546563413142


Q ss_pred             CCCCCCCCCCHHCCCCCCCCEEEEECCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             188488889811028999999981478144138999-987777810234787888988667
Q 027850          149 NGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTA-GSFSKFSEESFMNNPRLEGPELMG  208 (218)
Q Consensus       149 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~l~~L~~l~l~~N~~l~~~~~~~  208 (218)
                      ++|++++..|..|..+++|+++++++|.+.+.++.. ..+.+|+.+++++||..|.++..+
T Consensus       185 ~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~  245 (284)
T d1ozna_         185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP  245 (284)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHH
T ss_pred             HHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHH
T ss_conf             1143466281676653200023333352210000023554656889811998878756469

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=1.8e-20  Score=104.09  Aligned_cols=75  Identities=27%  Similarity=0.316  Sum_probs=45.6

Q ss_pred             CCCCCCEEEECC----------CCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             998743157399----------9978999839999731168456799999889733785787788000268889889733
Q 027850           56 DPCTWFHVTCDA----------DNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLY  125 (218)
Q Consensus        56 ~~c~~~gv~c~~----------~~~l~~L~Ls~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls  125 (218)
                      +.|.|.+|.|..          +..++.|++++|.++...+..|.+++.|+.|++++|.+....|..|..++.|+.++++
T Consensus         8 c~c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_           8 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEECCCEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCEECCC
T ss_conf             89559999855999885198889997989784991898696576046565231123443445235665279855783156


Q ss_pred             CCCCC
Q ss_conf             88578
Q 027850          126 HNNLT  130 (218)
Q Consensus       126 ~n~l~  130 (218)
                      +|+++
T Consensus        88 ~n~l~   92 (305)
T d1xkua_          88 KNQLK   92 (305)
T ss_dssp             SSCCS
T ss_pred             CCCCC
T ss_conf             87567

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.84  E-value=1.4e-21  Score=109.02  Aligned_cols=142  Identities=23%  Similarity=0.308  Sum_probs=120.3

Q ss_pred             CEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf             31573999978999839999731168456799999889733785787-78800026888988973388578999613789
Q 027850           61 FHVTCDADNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAG-QIPKELGQLKSLISLDLYHNNLTGPIPPSLSR  139 (218)
Q Consensus        61 ~gv~c~~~~~l~~L~Ls~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~  139 (218)
                      .+..|.    .+.++.++++++ .+|..+.  +.+++|++++|.++. ..+..|..+++|+.|++++|.+....+..+..
T Consensus         4 ~~C~C~----~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~   76 (192)
T d1w8aa_           4 AMCHCE----GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG   76 (192)
T ss_dssp             TTSEEE----TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT
T ss_pred             CCCEEC----CCEEEEECCCCC-CCCCCCC--CCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC
T ss_conf             998976----999997089967-0298989--787889848987755302002578762721301363221212122211


Q ss_pred             CCCCCEEECCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             999998981188488889811028999999981478144138999-9877778102347878889886676
Q 027850          140 LSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTA-GSFSKFSEESFMNNPRLEGPELMGF  209 (218)
Q Consensus       140 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~l~~L~~l~l~~N~~l~~~~~~~~  209 (218)
                      ++.|++|++++|+++...+..|..+++|++|+|++|++++..+.. ..+++|+.+++++|+..+.++..+.
T Consensus        77 ~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~  147 (192)
T d1w8aa_          77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF  147 (192)
T ss_dssp             CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH
T ss_pred             CCCCCEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf             22221010035534434979980797465524577453535977856875334200036443435302777

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.4e-19  Score=100.16  Aligned_cols=132  Identities=27%  Similarity=0.253  Sum_probs=85.5

Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             99789998399997311684567999998897337857877880002688898897338857899961378999999898
Q 027850           68 DNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLR  147 (218)
Q Consensus        68 ~~~l~~L~Ls~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~  147 (218)
                      +..++.|+|++|.+....+..|..+++|+.|++++|.++. ++ .+..+++|+.|++++|++. ..+..+..++.|+.++
T Consensus        30 p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~  106 (266)
T d1p9ag_          30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD  106 (266)
T ss_dssp             CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCC-CC-CCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCC
T ss_conf             7688989884992898597786345655221356654444-31-1111223211111222221-1111212222222222


Q ss_pred             CCC------------------------CCCCCCCCHHCCCCCCCCEEEEECCCCCCCCCCC-CCCCCCCCCCCCCCCCCC
Q ss_conf             118------------------------8488889811028999999981478144138999-987777810234787888
Q 027850          148 LNG------------------------NKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTA-GSFSKFSEESFMNNPRLE  202 (218)
Q Consensus       148 l~~------------------------n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~l~~L~~l~l~~N~~l~  202 (218)
                      +++                        |.+....+..+..++.++.+++++|++++..+.. ..+++|+.|++++| .++
T Consensus       107 l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~L~  185 (266)
T d1p9ag_         107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLY  185 (266)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSS-CCC
T ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCC-CCC
T ss_conf             2223110110011222211112212434210221233322111000000015652237200134212423430139-785


Q ss_pred             C
Q ss_conf             9
Q 027850          203 G  203 (218)
Q Consensus       203 ~  203 (218)
                      .
T Consensus       186 ~  186 (266)
T d1p9ag_         186 T  186 (266)
T ss_dssp             C
T ss_pred             C
T ss_conf             5

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1e-18  Score=96.40  Aligned_cols=130  Identities=23%  Similarity=0.220  Sum_probs=58.5

Q ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-------------------------CCCCCCCCCCCEEE
Q ss_conf             97899983999973116845679999988973378578778-------------------------80002688898897
Q 027850           69 NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQI-------------------------PKELGQLKSLISLD  123 (218)
Q Consensus        69 ~~l~~L~Ls~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-------------------------p~~~~~l~~L~~L~  123 (218)
                      ..++.|++++|.++...+..|.+++.|+.+++++|.+....                         +..+..+++|+.++
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEE
T ss_conf             99888977488179879778641421300001344543321112122222222222210223544620101010277875


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCCCCCC-CCCCCCCCCCCCCC
Q ss_conf             3388578999613789999998981188488889811028999999981478144138999-98777781023478
Q 027850          124 LYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTA-GSFSKFSEESFMNN  198 (218)
Q Consensus       124 ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~l~~L~~l~l~~N  198 (218)
                      +++|.+....+..+....+|+.+++++|.++...+..+..++.|+.|++++|.+.+..+.. ..+++|+.+.+.+|
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N  187 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN  187 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCCCCCCCCCCCCCCHHCCCCHHHHCCCCCCCCCHHHHCCCCCHHHCCCCCCCCCCCCHHHHCCCCCCCHHHHHHC
T ss_conf             6885443201353320001211020014314458057404340502231417656625666546563413142114

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.72  E-value=3.4e-18  Score=94.09  Aligned_cols=138  Identities=34%  Similarity=0.559  Sum_probs=96.5

Q ss_pred             CCEEEEECCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC------------------------CCCCCEEE
Q ss_conf             9789998399-9973116845679999988973378578778800026------------------------88898897
Q 027850           69 NRVTRLDLGN-GKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQ------------------------LKSLISLD  123 (218)
Q Consensus        69 ~~l~~L~Ls~-~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~------------------------l~~L~~L~  123 (218)
                      .+++.+++++ |++.|.+|..+.++++|++|++++|.+.+..+..+..                        ++.++.++
T Consensus        76 ~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~  155 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT  155 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHCCCCCCCEEE
T ss_conf             53352020265433300243114542001102035643443322222011100111122455556851220674000000


Q ss_pred             CCCCCCCC-----------------------------------------------------------------------C
Q ss_conf             33885789-----------------------------------------------------------------------9
Q 027850          124 LYHNNLTG-----------------------------------------------------------------------P  132 (218)
Q Consensus       124 ls~n~l~~-----------------------------------------------------------------------~  132 (218)
                      +++|.+.+                                                                       .
T Consensus       156 l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~  235 (313)
T d1ogqa_         156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF  235 (313)
T ss_dssp             CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             23553356203121443112323102246435332433222222233333343322222222222221112222222222


Q ss_pred             CCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             96137899999989811884888898110289999999814781441389999877778102347878889886
Q 027850          133 IPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLEGPEL  206 (218)
Q Consensus       133 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~l~l~~N~~l~~~~~  206 (218)
                      .+..+..+++++.+++++|++++.+|..+..+++|++|++++|+++|.+|..+.+++|+.+++.+|+.+||.++
T Consensus       236 ~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~pl  309 (313)
T d1ogqa_         236 DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL  309 (313)
T ss_dssp             BGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTS
T ss_pred             CCCCCCCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCC
T ss_conf             22222245544444476570666087688479999989795883516689866679989788688950019898

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.72  E-value=5.5e-17  Score=88.77  Aligned_cols=128  Identities=22%  Similarity=0.303  Sum_probs=95.3

Q ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf             97899983999973116845679999988973378578778800026888988973388578999613789999998981
Q 027850           69 NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRL  148 (218)
Q Consensus        69 ~~l~~L~Ls~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l  148 (218)
                      ..++.++++++.+.. ++..  .+++++.|++++|......+..+..++.++.+++++|.+.+..+..+..+++|++|++
T Consensus       150 ~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L  226 (305)
T d1xkua_         150 KKLSYIRIADTNITT-IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL  226 (305)
T ss_dssp             TTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEEC
T ss_pred             CCCCCCCCCCCCCCC-CCCC--CCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC
T ss_conf             656712034677451-6710--1776678989788677888267641341330154455332223454334433224302


Q ss_pred             CCCCCCCCCCHHCCCCCCCCEEEEECCCCCCCCCCC-------CCCCCCCCCCCCCCCC
Q ss_conf             188488889811028999999981478144138999-------9877778102347878
Q 027850          149 NGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTA-------GSFSKFSEESFMNNPR  200 (218)
Q Consensus       149 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~-------~~l~~L~~l~l~~N~~  200 (218)
                      ++|.++ .+|..+..+++|++|++++|+++......       ....+|+.+++++||.
T Consensus       227 ~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         227 NNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             CSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             CCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCHHHCCCCCHHCCCCCCCEEECCCCCC
T ss_conf             554002-4631103346789898989865763810026721002158889788989957

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=4.5e-17  Score=89.14  Aligned_cols=104  Identities=28%  Similarity=0.388  Sum_probs=84.5

Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf             99983999973116845679999988973378578778800026888988973388578999613789999998981188
Q 027850           72 TRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGN  151 (218)
Q Consensus        72 ~~L~Ls~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n  151 (218)
                      +.+++++|.++. ++ .+..++.|++|++++|.+. .+|..+..+++|+.+++++|.+.. .+ .+..+++|+.+++++|
T Consensus         1 R~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEECCCCCCCC-CC-CCCCCCCCCEEECCCCCCC-CCHHHHHHHHCCCCCCCCCCCCCC-CC-CCCCCCCCCEEECCCC
T ss_conf             989868998988-71-0105898898979787168-652156554313545324321123-57-4123355576888898


Q ss_pred             CCCCCC-CHHCCCCCCCCEEEEECCCCCCC
Q ss_conf             488889-81102899999998147814413
Q 027850          152 KLTGKI-PRELTKLGNLKILDVSNNDLCGT  180 (218)
Q Consensus       152 ~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~  180 (218)
                      ++.... ...+..+++|+.+++++|.++..
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             CCCCCCCCHHHCCCCCCCEEECCCCCCCCC
T ss_conf             658888825653799999998979968868

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.8e-17  Score=90.08  Aligned_cols=102  Identities=21%  Similarity=0.135  Sum_probs=75.0

Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCEEECCCC-CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf             83999973116845679999988973378-57877880002688898897338857899961378999999898118848
Q 027850           75 DLGNGKLSGNLVPELGKLERLQYLELYMN-NLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKL  153 (218)
Q Consensus        75 ~Ls~~~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l  153 (218)
                      +.+++++. ..|..+..+++++.|++.++ .+....+..|..++.|+.|++++|+++...+..|..+++|++|++++|++
T Consensus        14 ~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l   92 (156)
T d2ifga3          14 RCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL   92 (156)
T ss_dssp             ECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred             EECCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEECCCCCC
T ss_conf             85289976-58600257656574316898664436921225666667216202124774201112455433332267878


Q ss_pred             CCCCCHHCCCCCCCCEEEEECCCCC
Q ss_conf             8889811028999999981478144
Q 027850          154 TGKIPRELTKLGNLKILDVSNNDLC  178 (218)
Q Consensus       154 ~~~~p~~~~~l~~L~~L~Ls~N~l~  178 (218)
                      + .++........|+.|++++|.+.
T Consensus        93 ~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          93 E-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             S-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             C-CCCHHHHCCCCCCCCCCCCCCCC
T ss_conf             5-15745633532124335798633

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.5e-17  Score=91.27  Aligned_cols=124  Identities=18%  Similarity=0.103  Sum_probs=93.2

Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             99789998399997311684567999998897337857877880002688898897338857899961378999999898
Q 027850           68 DNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLR  147 (218)
Q Consensus        68 ~~~l~~L~Ls~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~  147 (218)
                      ...+++|++++|.+.. ++..+..+++|+.|++++|.+... + .+..++.|+.|++++|++....+..+..++++++|+
T Consensus        17 ~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l-~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          17 AVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL-D-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             TTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE-C-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             CCCCCEEECCCCCCCC-CCCCCCCCCCCCEEECCCCCCCCC-C-CCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf             5748489788997886-576200414599898979978764-7-744576130643102134577763223345344342


Q ss_pred             CCCCCCCCCCC-HHCCCCCCCCEEEEECCCCCCCCC---C-CCCCCCCCCCC
Q ss_conf             11884888898-110289999999814781441389---9-99877778102
Q 027850          148 LNGNKLTGKIP-RELTKLGNLKILDVSNNDLCGTIP---T-AGSFSKFSEES  194 (218)
Q Consensus       148 l~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~---~-~~~l~~L~~l~  194 (218)
                      +++|.+..... ..+..+++|+++++++|.++....   . ...+++|+.|+
T Consensus        94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          94 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHCCCCCEEC
T ss_conf             0300016654211001365320664079963456106999998789958337

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=8.5e-17  Score=87.93  Aligned_cols=101  Identities=28%  Similarity=0.354  Sum_probs=85.4

Q ss_pred             CEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEEEECC
Q ss_conf             88973378578778800026888988973388578999613789999998981188488889811028999999981478
Q 027850           96 QYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNN  175 (218)
Q Consensus        96 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N  175 (218)
                      +.|++++|.++ .++ .+..++.|+++++++|+++ .+|+.+..+++|+.+++++|.++ .++ .+..+++|+.+++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSS
T ss_pred             CEEECCCCCCC-CCC-CCCCCCCCCEEECCCCCCC-CCHHHHHHHHCCCCCCCCCCCCC-CCC-CCCCCCCCCEEECCCC
T ss_conf             98986899898-871-0105898898979787168-65215655431354532432112-357-4123355576888898


Q ss_pred             CCCCCCC--CCCCCCCCCCCCCCCCCCC
Q ss_conf             1441389--9998777781023478788
Q 027850          176 DLCGTIP--TAGSFSKFSEESFMNNPRL  201 (218)
Q Consensus       176 ~l~~~~~--~~~~l~~L~~l~l~~N~~l  201 (218)
                      ++.....  ....+++|+.+++++|+.-
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCCCCCHHHCCCCCCCEEECCCCCCC
T ss_conf             6588888256537999999989799688

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=5.7e-17  Score=88.68  Aligned_cols=111  Identities=20%  Similarity=0.184  Sum_probs=91.7

Q ss_pred             CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCC
Q ss_conf             45679999988973378578778800026888988973388578999613789999998981188488889811028999
Q 027850           87 PELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGN  166 (218)
Q Consensus        87 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  166 (218)
                      +.+.+...++.|++++|.+.. ++..+..++.|+.+++++|.+. .+ +.+..+++|++|++++|.++...+..+..+++
T Consensus        12 ~~~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~-~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~   88 (162)
T d1a9na_          12 AQYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   88 (162)
T ss_dssp             CEEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCC-EE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             HHCCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCEEECCCCCCC-CC-CCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             751685748489788997886-5762004145998989799787-64-77445761306431021345777632233453


Q ss_pred             CCEEEEECCCCCCCCC--CCCCCCCCCCCCCCCCCC
Q ss_conf             9999814781441389--999877778102347878
Q 027850          167 LKILDVSNNDLCGTIP--TAGSFSKFSEESFMNNPR  200 (218)
Q Consensus       167 L~~L~Ls~N~l~~~~~--~~~~l~~L~~l~l~~N~~  200 (218)
                      |+.|++++|.+.....  ....+++|+.+++++|+.
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i  124 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV  124 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred             CCCCEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCC
T ss_conf             443420300016654211001365320664079963

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=3.3e-16  Score=85.36  Aligned_cols=127  Identities=24%  Similarity=0.334  Sum_probs=74.6

Q ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC---------------
Q ss_conf             97899983999973116845679999988973378578778800026888988973388578999---------------
Q 027850           69 NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPI---------------  133 (218)
Q Consensus        69 ~~l~~L~Ls~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~---------------  133 (218)
                      .+++.++++++.+..  .+.+..++.++.+++++|.+.+..+  +..++.|+.++++++++.+..               
T Consensus       219 ~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~  294 (384)
T d2omza2         219 TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNE  294 (384)
T ss_dssp             TTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCS
T ss_pred             CCCCEEECCCCCCCC--CCHHHCCCCCCHHCCCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             778788887777789--6134325653410044674478775--355466877545674457877323565222233232


Q ss_pred             -----CCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             -----6137899999989811884888898110289999999814781441389999877778102347878889
Q 027850          134 -----PPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLEG  203 (218)
Q Consensus       134 -----p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~l~l~~N~~l~~  203 (218)
                           ...+..+++++.+++++|++++. + .+..+++|+.|++++|++++. +....+++|+.+++++| .+++
T Consensus       295 n~l~~~~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~l-~~l~~l~~L~~L~l~~N-~l~~  365 (384)
T d2omza2         295 NQLEDISPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVSDV-SSLANLTNINWLSAGHN-QISD  365 (384)
T ss_dssp             SCCSCCGGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECCSS-CCCB
T ss_pred             CCCCCCCCCCHHCCCCEEECCCCCCCCC-C-CCCCCCCCCEEECCCCCCCCC-HHHCCCCCCCEEECCCC-CCCC
T ss_conf             3333322100002467677778877898-4-536689889898989989997-46708999998989799-5899

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=8.6e-16  Score=83.50  Aligned_cols=128  Identities=25%  Similarity=0.396  Sum_probs=103.5

Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             99789998399997311684567999998897337857877880002688898897338857899961378999999898
Q 027850           68 DNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLR  147 (218)
Q Consensus        68 ~~~l~~L~Ls~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~  147 (218)
                      ..+++.|++++|.+.+..  .+..+++|+.|++++|.+.. ++ .+..++.|+.++++++.....  ..+..+++|+.++
T Consensus        61 l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~  134 (199)
T d2omxa2          61 LNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLE  134 (199)
T ss_dssp             CTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEE
T ss_pred             CCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCC-CC-CCCCCCCCCCCCCCCCCCCCC--CCCCHHHHHHHHH
T ss_conf             788675754565566764--01677522311112222222-21-111122322211122222232--1000122367764


Q ss_pred             CCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             1188488889811028999999981478144138999987777810234787888988
Q 027850          148 LNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLEGPE  205 (218)
Q Consensus       148 l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~l~l~~N~~l~~~~  205 (218)
                      +++|.+. .+ ..+..+++++.+++.+|++++. +....+++|+.|++++| .++..+
T Consensus       135 l~~n~l~-~~-~~l~~~~~L~~L~l~~n~l~~l-~~l~~l~~L~~L~ls~N-~i~~i~  188 (199)
T d2omxa2         135 LSSNTIS-DI-SALSGLTSLQQLNFSSNQVTDL-KPLANLTTLERLDISSN-KVSDIS  188 (199)
T ss_dssp             CCSSCCC-CC-GGGTTCTTCSEEECCSSCCCCC-GGGTTCTTCCEEECCSS-CCCCCG
T ss_pred             HHHHHHC-CC-CCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCEEECCCC-CCCCCC
T ss_conf             3111100-23-4333211111122345555677-01167998999978799-799881

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=3.2e-15  Score=80.95  Aligned_cols=127  Identities=24%  Similarity=0.366  Sum_probs=101.8

Q ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf             97899983999973116845679999988973378578778800026888988973388578999613789999998981
Q 027850           69 NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRL  148 (218)
Q Consensus        69 ~~l~~L~Ls~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l  148 (218)
                      .+++.++++++.+...  ..+..+++|++|++++|.+.+..+  +..+++|+++++++|.+. ..+ .+..++.|+.+++
T Consensus        40 ~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l  113 (199)
T d2omxa2          40 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTL  113 (199)
T ss_dssp             TTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEEC
T ss_pred             CCCCEEECCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCC-CCC-CCCCCCCCCCCCC
T ss_conf             6878998999999775--202137886757545655667640--167752231111222222-221-1111223222111


Q ss_pred             CCCCCCCCCCHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             188488889811028999999981478144138999987777810234787888988
Q 027850          149 NGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLEGPE  205 (218)
Q Consensus       149 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~l~l~~N~~l~~~~  205 (218)
                      +++....  ...+..+++|+.+++++|.+.. ++....+++++.+.+.+| .+++.+
T Consensus       114 ~~~~~~~--~~~~~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~L~l~~n-~l~~l~  166 (199)
T d2omxa2         114 FNNQITD--IDPLKNLTNLNRLELSSNTISD-ISALSGLTSLQQLNFSSN-QVTDLK  166 (199)
T ss_dssp             CSSCCCC--CGGGTTCTTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSS-CCCCCG
T ss_pred             CCCCCCC--CCCCCHHHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCC-CCCCCC
T ss_conf             2222223--2100012236776431111002-343332111111223455-556770

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=3.1e-15  Score=81.02  Aligned_cols=127  Identities=29%  Similarity=0.381  Sum_probs=99.7

Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             99789998399997311684567999998897337857877880002688898897338857899961378999999898
Q 027850           68 DNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLR  147 (218)
Q Consensus        68 ~~~l~~L~Ls~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~  147 (218)
                      ..+++.|++++|.+.+. + .+..+++|+.|++++|.+.+ ++ .+..++.|+.+++++|.+. .. ..+..++.++.++
T Consensus        67 l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~-~~-~~l~~l~~l~~l~  140 (210)
T d1h6ta2          67 LPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLY  140 (210)
T ss_dssp             CTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCC-CC-GGGGGCTTCCEEE
T ss_pred             CCCCCEEECCCCCCCCC-C-CCCCCCCCCCCCCCCCCCCC-CC-CCCCCCCCCCCCCCCCCCC-CC-CCCCCCCCCCCCC
T ss_conf             89989876989602586-0-11358621201433333212-22-1212221112234565322-11-2201111122211


Q ss_pred             CCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             118848888981102899999998147814413899998777781023478788898
Q 027850          148 LNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLEGP  204 (218)
Q Consensus       148 l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~l~l~~N~~l~~~  204 (218)
                      +++|.++.  +..+..+++|+.+++++|++++. +....+++|+.|++++| .++..
T Consensus       141 ~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~~l~~l~~L~~L~Ls~N-~i~~l  193 (210)
T d1h6ta2         141 LGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKN-HISDL  193 (210)
T ss_dssp             CCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-GGGTTCTTCCEEECCSS-CCCBC
T ss_pred             CCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCEEECCCC-CCCCC
T ss_conf             22233345--43100013321001346430256-45367898999989799-89987

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=1e-14  Score=78.72  Aligned_cols=81  Identities=25%  Similarity=0.468  Sum_probs=43.0

Q ss_pred             CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             02688898897338857899961378999999898118848888981102899999998147814413899998777781
Q 027850          113 LGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSE  192 (218)
Q Consensus       113 ~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~  192 (218)
                      +..+..++.+++++|++.+. + .+..+++|++|++++|.++ .++ .+..+++|++|++++|++++.+| ...+++|+.
T Consensus       303 ~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~  377 (384)
T d2omza2         303 ISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQ  377 (384)
T ss_dssp             GGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSE
T ss_pred             CCHHCCCCEEECCCCCCCCC-C-CCCCCCCCCEEECCCCCCC-CCH-HHCCCCCCCEEECCCCCCCCCHH-HCCCCCCCE
T ss_conf             00002467677778877898-4-5366898898989899899-974-67089999989897995899800-003999999


Q ss_pred             CCCCCC
Q ss_conf             023478
Q 027850          193 ESFMNN  198 (218)
Q Consensus       193 l~l~~N  198 (218)
                      |++++|
T Consensus       378 L~L~~N  383 (384)
T d2omza2         378 LGLNDQ  383 (384)
T ss_dssp             EECCCE
T ss_pred             EECCCC
T ss_conf             639789

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=7.9e-15  Score=79.24  Aligned_cols=114  Identities=18%  Similarity=0.036  Sum_probs=64.8

Q ss_pred             CCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC-CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEEEE
Q ss_conf             988973378578778800026888988973388-5789996137899999989811884888898110289999999814
Q 027850           95 LQYLELYMNNLAGQIPKELGQLKSLISLDLYHN-NLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVS  173 (218)
Q Consensus        95 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n-~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls  173 (218)
                      .+.++.+++.+. ..|..+..+++++.+++.+| .++...+..|..+++|+.|++++|+++...+..|..+++|++|+|+
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCEEEECCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEECC
T ss_conf             996985289976-5860025765657431689866443692122566666721620212477420111245543333226


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             781441389999877778102347878889886676
Q 027850          174 NNDLCGTIPTAGSFSKFSEESFMNNPRLEGPELMGF  209 (218)
Q Consensus       174 ~N~l~~~~~~~~~l~~L~~l~l~~N~~l~~~~~~~~  209 (218)
                      +|+++...+......+++.+++++||.-|++++.++
T Consensus        89 ~N~l~~l~~~~~~~~~l~~L~L~~Np~~C~C~~~~l  124 (156)
T d2ifga3          89 FNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWL  124 (156)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCCCCCGGGHHH
T ss_pred             CCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf             787851574563353212433579863388117999

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.3e-14  Score=78.31  Aligned_cols=99  Identities=19%  Similarity=0.254  Sum_probs=67.7

Q ss_pred             CCCCCCEEEECC----------CCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEEEC
Q ss_conf             998743157399----------997899983999973116845679999988973378578778-800026888988973
Q 027850           56 DPCTWFHVTCDA----------DNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQI-PKELGQLKSLISLDL  124 (218)
Q Consensus        56 ~~c~~~gv~c~~----------~~~l~~L~Ls~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~l  124 (218)
                      +.|....|.|..          +..++.|++++|.+....+..|.++++|++|++++|.+...+ +..|..++.++++.+
T Consensus         6 C~C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~   85 (242)
T d1xwdc1           6 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   85 (242)
T ss_dssp             EEECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE
T ss_pred             CCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCC
T ss_conf             88739999981899887688889988999876991896496686146432321102211242010011222222222111


Q ss_pred             CC-CCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf             38-8578999613789999998981188488
Q 027850          125 YH-NNLTGPIPPSLSRLSNLKFLRLNGNKLT  154 (218)
Q Consensus       125 s~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~  154 (218)
                      .. |.+....+..+..+++|+.+++++|.+.
T Consensus        86 ~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          86 EKANNLLYINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             ECCTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHC
T ss_conf             1123432222221222222222234211112

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.57  E-value=2e-14  Score=77.43  Aligned_cols=120  Identities=25%  Similarity=0.277  Sum_probs=54.4

Q ss_pred             CEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             78999839999731168456799999889733785787788000268889889733885789996137899999989811
Q 027850           70 RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLN  149 (218)
Q Consensus        70 ~l~~L~Ls~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~  149 (218)
                      .++.++++++.+...  ..+..+++|+.|++++|.+.+..  .+..+++|+++++++|+++ .++ .+..+++|+.++++
T Consensus        47 ~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          47 SIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             TCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECT
T ss_pred             CCCEEECCCCCCCCC--HHHHHCCCCCEEECCCCCCCCCC--CCCCCCCCCCCCCCCCCCC-CCC-CCCCCCCCCCCCCC
T ss_conf             845897827988874--44764899898769896025860--1135862120143333321-222-12122211122345


Q ss_pred             CCCCCCCCCHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             8848888981102899999998147814413899998777781023478
Q 027850          150 GNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNN  198 (218)
Q Consensus       150 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~l~l~~N  198 (218)
                      +|.+. . ...+..++.++.++++.|.+.+. +....+++|+.+++++|
T Consensus       121 ~~~~~-~-~~~l~~l~~l~~l~~~~n~l~~~-~~~~~l~~L~~l~l~~n  166 (210)
T d1h6ta2         121 HNGIS-D-INGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN  166 (210)
T ss_dssp             TSCCC-C-CGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS
T ss_pred             CCCCC-C-CCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCC
T ss_conf             65322-1-12201111122211222333454-31000133210013464

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.55  E-value=2.8e-14  Score=76.85  Aligned_cols=129  Identities=23%  Similarity=0.376  Sum_probs=91.2

Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC--------------
Q ss_conf             997899983999973116845679999988973378578778800026888988973388578999--------------
Q 027850           68 DNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPI--------------  133 (218)
Q Consensus        68 ~~~l~~L~Ls~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~--------------  133 (218)
                      ..+++.+++++|.+.+..  .+..++.++.+++++|.+.. ++ .+..++.|+.++++++...+..              
T Consensus        62 l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~-i~-~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~  137 (227)
T d1h6ua2          62 LNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLD  137 (227)
T ss_dssp             CTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECC
T ss_pred             CCCCCEEECCCCEEECCC--CCCCCCCCCCCCCCCCCCCC-CC-CCCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCH
T ss_conf             888837635785320254--31123343201211122222-22-222222221221222443311000002301222000


Q ss_pred             ------CCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             ------61378999999898118848888981102899999998147814413899998777781023478788898
Q 027850          134 ------PPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLEGP  204 (218)
Q Consensus       134 ------p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~l~l~~N~~l~~~  204 (218)
                            ...+...++++.+++++|.+...  ..+..+++|+.|++++|++.+. +....+++|++|++++| .++..
T Consensus       138 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l-~~l~~l~~L~~L~Ls~N-~lt~i  210 (227)
T d1h6ua2         138 LNQITNISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDI-SPLASLPNLIEVHLKNN-QISDV  210 (227)
T ss_dssp             SSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECTTS-CCCBC
T ss_pred             HHHHCHHHHHCCCCCCCCCCCCCCCCCCC--HHHCCCCCCEECCCCCCCCCCC-HHHCCCCCCCEEECCCC-CCCCC
T ss_conf             00000000001021110023333333310--0105646335644588841778-53447999998979599-68998

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.50  E-value=2.7e-17  Score=90.11  Aligned_cols=111  Identities=23%  Similarity=0.279  Sum_probs=75.6

Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             99789998399997311684567999998897337857877880002688898897338857899961378999999898
Q 027850           68 DNRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLR  147 (218)
Q Consensus        68 ~~~l~~L~Ls~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~  147 (218)
                      ..+++.|++++|.+.. + +.+..+++|+.|++++|.+. .+|.....++.|+.+++++|.+.. + +.+..+++|+.|+
T Consensus        47 L~~L~~L~Ls~n~I~~-i-~~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l~~L~~L~  121 (198)
T d1m9la_          47 LKACKHLALSTNNIEK-I-SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEKLVNLRVLY  121 (198)
T ss_dssp             TTTCCEEECSEEEESC-C-CCHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHHHHHSSEEE
T ss_pred             CCCCCEEECCCCCCCC-C-CCCCCCCCCCCHHHCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCC-C-CCCCCCCCCCCCC
T ss_conf             6046151994468998-6-44247825357341353432-100003322123333333322222-2-2222222341112


Q ss_pred             CCCCCCCCCCC-HHCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf             11884888898-1102899999998147814413899
Q 027850          148 LNGNKLTGKIP-RELTKLGNLKILDVSNNDLCGTIPT  183 (218)
Q Consensus       148 l~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~~  183 (218)
                      +++|.++.... ..+..+++|+.|++++|.+....+.
T Consensus       122 L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  158 (198)
T d1m9la_         122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             ESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCT
T ss_pred             CCCCHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
T ss_conf             3410212554221236777630234279843467632

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.43  E-value=1.5e-16  Score=86.90  Aligned_cols=112  Identities=24%  Similarity=0.293  Sum_probs=91.0

Q ss_pred             CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCC
Q ss_conf             16845679999988973378578778800026888988973388578999613789999998981188488889811028
Q 027850           84 NLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPRELTK  163 (218)
Q Consensus        84 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~  163 (218)
                      ..+.++..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+. .++.....++.|+.|++++|.++. + ..+..
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~  113 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEK  113 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHH
T ss_pred             HHHHHHHCCCCCCEEECCCCCCCC-CC-CCCCCCCCCCHHHCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCC-C-CCCCC
T ss_conf             024677626046151994468998-64-4247825357341353432-100003322123333333322222-2-22222


Q ss_pred             CCCCCEEEEECCCCCCCCC--CCCCCCCCCCCCCCCCCC
Q ss_conf             9999999814781441389--999877778102347878
Q 027850          164 LGNLKILDVSNNDLCGTIP--TAGSFSKFSEESFMNNPR  200 (218)
Q Consensus       164 l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~l~l~~N~~  200 (218)
                      +++|+.|++++|.++....  ....+++|+.+++++||.
T Consensus       114 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             CCCCCCCCCCCCHHCCCCCCCCCCCCCCCCEEECCCCCC
T ss_conf             223411123410212554221236777630234279843

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.42  E-value=1.1e-12  Score=69.88  Aligned_cols=126  Identities=23%  Similarity=0.310  Sum_probs=63.0

Q ss_pred             CEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             78999839999731168456799999889733785787788000268889889733885789996137899999989811
Q 027850           70 RVTRLDLGNGKLSGNLVPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLN  149 (218)
Q Consensus        70 ~l~~L~Ls~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~  149 (218)
                      .++.+++.++++.. + +.+..+++|+.+++++|.+.+..|  +..++.++++++++|.++ .+ ..+..+++|+.+.++
T Consensus        42 ~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~-~i-~~l~~l~~L~~l~l~  115 (227)
T d1h6ua2          42 GITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NV-SAIAGLQSIKTLDLT  115 (227)
T ss_dssp             TCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CC-GGGTTCTTCCEEECT
T ss_pred             CCCEEECCCCCCCC-C-HHHHCCCCCCEEECCCCEEECCCC--CCCCCCCCCCCCCCCCCC-CC-CCCCCCCCCCCCCCC
T ss_conf             86899777999976-6-457448888376357853202543--112334320121112222-22-222222222122122


Q ss_pred             CCCCCCC--------------------CCHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             8848888--------------------98110289999999814781441389999877778102347878889
Q 027850          150 GNKLTGK--------------------IPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNPRLEG  203 (218)
Q Consensus       150 ~n~l~~~--------------------~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~l~l~~N~~l~~  203 (218)
                      .+...+.                    ....+...++|+.+++++|.+.+.. ....+++|+.+++++| .+++
T Consensus       116 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~Ls~n-~l~~  187 (227)
T d1h6ua2         116 STQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDN-KISD  187 (227)
T ss_dssp             TSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSS-CCCC
T ss_pred             CCCCCCCCHHCCCCCHHHHHCHHHHHCHHHHHCCCCCCCCCCCCCCCCCCCH-HHCCCCCCEECCCCCC-CCCC
T ss_conf             2443311000002301222000000000000010211100233333333100-1056463356445888-4177

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.6e-12  Score=68.16  Aligned_cols=132  Identities=17%  Similarity=0.118  Sum_probs=67.5

Q ss_pred             CCEEEEECCCCCCCCCC-CCCCCCCCCCCEEECCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC------------
Q ss_conf             97899983999973116-84567999998897337-85787788000268889889733885789996------------
Q 027850           69 NRVTRLDLGNGKLSGNL-VPELGKLERLQYLELYM-NNLAGQIPKELGQLKSLISLDLYHNNLTGPIP------------  134 (218)
Q Consensus        69 ~~l~~L~Ls~~~l~~~~-~~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p------------  134 (218)
                      .+++.+++++|.+...+ +..|..++.++.+.+.. |.+....+..+..++.|+.+++++|.+....+            
T Consensus        53 ~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~  132 (242)
T d1xwdc1          53 GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL  132 (242)
T ss_dssp             TTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEE
T ss_pred             CHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCC
T ss_conf             43232110221124201001122222222211111234322222212222222222342111125543332221111222


Q ss_pred             -------------CCCCCC-CCCCEEECCCCCCCCCCCHHCCCCCCCCEE-EEECCCCCCCCCCC-CCCCCCCCCCCCCC
Q ss_conf             -------------137899-999989811884888898110289999999-81478144138999-98777781023478
Q 027850          135 -------------PSLSRL-SNLKFLRLNGNKLTGKIPRELTKLGNLKIL-DVSNNDLCGTIPTA-GSFSKFSEESFMNN  198 (218)
Q Consensus       135 -------------~~~~~l-~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L-~Ls~N~l~~~~~~~-~~l~~L~~l~l~~N  198 (218)
                                   ..+..+ ..++.+++++|+++. ++.......++..+ ++++|.++...+.. ..+++|+.|++++|
T Consensus       133 ~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~-i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N  211 (242)
T d1xwdc1         133 DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT  211 (242)
T ss_dssp             EEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTS
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC-CCCCCCCCHHHHCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCC
T ss_conf             22221211122222222223310012200123333-22222220111012123543246424788668999998989799


Q ss_pred             CCCC
Q ss_conf             7888
Q 027850          199 PRLE  202 (218)
Q Consensus       199 ~~l~  202 (218)
                      + ++
T Consensus       212 ~-l~  214 (242)
T d1xwdc1         212 R-IH  214 (242)
T ss_dssp             C-CC
T ss_pred             C-CC
T ss_conf             2-89

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.26  E-value=1e-10  Score=61.12  Aligned_cols=13  Identities=15%  Similarity=0.171  Sum_probs=5.3

Q ss_pred             CEEEEECCCCCCC
Q ss_conf             7899983999973
Q 027850           70 RVTRLDLGNGKLS   82 (218)
Q Consensus        70 ~l~~L~Ls~~~l~   82 (218)
                      +++.|++++|.++
T Consensus        59 ~L~~L~Ls~N~l~   71 (353)
T d1jl5a_          59 HLESLVASCNSLT   71 (353)
T ss_dssp             TCSEEECCSSCCS
T ss_pred             CCCEEECCCCCCC
T ss_conf             9888989999796

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.19  E-value=2e-10  Score=59.86  Aligned_cols=51  Identities=27%  Similarity=0.328  Sum_probs=20.2

Q ss_pred             CCCEEECCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9998981188488889811028999999981478144138999987777810234787
Q 027850          142 NLKFLRLNGNKLTGKIPRELTKLGNLKILDVSNNDLCGTIPTAGSFSKFSEESFMNNP  199 (218)
Q Consensus       142 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~l~l~~N~  199 (218)
                      +|++|++++|+++ .+|.   .+++|+.|++++|+++. +|.  .+.+|+.|++++|+
T Consensus       285 ~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~~-l~~--~~~~L~~L~L~~N~  335 (353)
T d1jl5a_         285 SLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLAE-VPE--LPQNLKQLHVEYNP  335 (353)
T ss_dssp             TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSC
T ss_pred             CCCEEECCCCCCC-CCCC---CCCCCCEEECCCCCCCC-CCC--CCCCCCEEECCCCC
T ss_conf             8898979799168-3566---54879989899996875-453--22888989876991

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=4.2e-12  Score=67.22  Aligned_cols=59  Identities=24%  Similarity=0.224  Sum_probs=29.4

Q ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCC-CCCCC-CCCCCCCCCCCCEEECCCC
Q ss_conf             97899983999973116845679999988973378-57877-8800026888988973388
Q 027850           69 NRVTRLDLGNGKLSGNLVPELGKLERLQYLELYMN-NLAGQ-IPKELGQLKSLISLDLYHN  127 (218)
Q Consensus        69 ~~l~~L~Ls~~~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L~ls~n  127 (218)
                      .+++.++++++.+.+.....+..+++|+.|+++++ .++.. .......++.|++++++++
T Consensus        71 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c  131 (284)
T d2astb2          71 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC  131 (284)
T ss_dssp             CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCC
T ss_conf             7765145234679867899985189975715100134123554036578874356522453

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.7e-12  Score=68.05  Aligned_cols=57  Identities=28%  Similarity=0.315  Sum_probs=26.3

Q ss_pred             CEEEEECCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf             7899983999973116-84567999998897337857877880002688898897338
Q 027850           70 RVTRLDLGNGKLSGNL-VPELGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYH  126 (218)
Q Consensus        70 ~l~~L~Ls~~~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~  126 (218)
                      +++.+|++++.+.... ...+..+++|++|++.++.+.+..+..+..+++|++|++++
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             CCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC
T ss_conf             7887889898457779999997487765145234679867899985189975715100

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2.7e-12  Score=68.07  Aligned_cols=107  Identities=20%  Similarity=0.145  Sum_probs=56.6

Q ss_pred             CCCCCEEECCCCCCCCCCCCC----CCCCCCCCEEECCCCCCCCC----CCCCC-CCCCCCCEEECCCCCCCCC----CC
Q ss_conf             999988973378578778800----02688898897338857899----96137-8999999898118848888----98
Q 027850           92 LERLQYLELYMNNLAGQIPKE----LGQLKSLISLDLYHNNLTGP----IPPSL-SRLSNLKFLRLNGNKLTGK----IP  158 (218)
Q Consensus        92 l~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L~ls~n~l~~~----~p~~~-~~l~~L~~L~l~~n~l~~~----~p  158 (218)
                      ...|+.++++++.+.......    +....+|++|++++|.+...    +...+ .....|++|++++|.++..    +.
T Consensus       311 ~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~  390 (460)
T d1z7xw1         311 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA  390 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred             CCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHEEEECCCCCCCCHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHH
T ss_conf             44433332333410233443213322110111132012101357664001112204567778898979979759999999


Q ss_pred             HHCCCCCCCCEEEEECCCCCCCCCC----C--CCCCCCCCCCCCCC
Q ss_conf             1102899999998147814413899----9--98777781023478
Q 027850          159 RELTKLGNLKILDVSNNDLCGTIPT----A--GSFSKFSEESFMNN  198 (218)
Q Consensus       159 ~~~~~l~~L~~L~Ls~N~l~~~~~~----~--~~l~~L~~l~l~~N  198 (218)
                      ..+...++|++|++++|.++.....    .  .....|+.+.+.+|
T Consensus       391 ~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~  436 (460)
T d1z7xw1         391 ATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI  436 (460)
T ss_dssp             HHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTC
T ss_pred             HHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCC
T ss_conf             9996299889898999969879999999999747886678989898

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.93  E-value=2.6e-11  Score=63.74  Aligned_cols=110  Identities=19%  Similarity=0.187  Sum_probs=56.8

Q ss_pred             CCCCCCCEEECCCCCCCCC-----CCCCCCCCCCCCEEECCCCCCCCC----CCCCCCCCCCCCEEECCCCCCCCCCCHH
Q ss_conf             7999998897337857877-----880002688898897338857899----9613789999998981188488889811
Q 027850           90 GKLERLQYLELYMNNLAGQ-----IPKELGQLKSLISLDLYHNNLTGP----IPPSLSRLSNLKFLRLNGNKLTGKIPRE  160 (218)
Q Consensus        90 ~~l~~L~~L~L~~n~l~~~-----~p~~~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~p~~  160 (218)
                      .....++.+++++|.+...     +...+...+.|+.|++++|.+...    +...+...++|++|++++|.+.......
T Consensus       183 ~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~  262 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  262 (344)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHH
T ss_conf             23332133543332222222320024332110121122233332222222234443323221111030047567156678


Q ss_pred             ----CC--CCCCCCEEEEECCCCCCCC----CCC--CCCCCCCCCCCCCCC
Q ss_conf             ----02--8999999981478144138----999--987777810234787
Q 027850          161 ----LT--KLGNLKILDVSNNDLCGTI----PTA--GSFSKFSEESFMNNP  199 (218)
Q Consensus       161 ----~~--~l~~L~~L~Ls~N~l~~~~----~~~--~~l~~L~~l~l~~N~  199 (218)
                          +.  ....|+.|++++|.+....    ...  ...++|+.+++++|.
T Consensus       263 l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         263 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             HHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCC
T ss_conf             887763156888898989898698089999999997038999989787980

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.82  E-value=2.9e-10  Score=59.12  Aligned_cols=108  Identities=19%  Similarity=0.152  Sum_probs=58.3

Q ss_pred             CCCCCEEECCCCCCCCC----CCCCCCCCCCCCEEECCCCCCCCC-----CCCCCCCCCCCCEEECCCCCCCCC----CC
Q ss_conf             99998897337857877----880002688898897338857899-----961378999999898118848888----98
Q 027850           92 LERLQYLELYMNNLAGQ----IPKELGQLKSLISLDLYHNNLTGP-----IPPSLSRLSNLKFLRLNGNKLTGK----IP  158 (218)
Q Consensus        92 l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~-----~p~~~~~l~~L~~L~l~~n~l~~~----~p  158 (218)
                      .+.++.+.+++|.+...    +...+.....++.+++++|.+...     +...+...++|+.|++++|.++..    +.
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~  236 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  236 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             76421110136501355433221111233321335433322222223200243321101211222333322222222344


Q ss_pred             HHCCCCCCCCEEEEECCCCCCCCCC----C---CCCCCCCCCCCCCCC
Q ss_conf             1102899999998147814413899----9---987777810234787
Q 027850          159 RELTKLGNLKILDVSNNDLCGTIPT----A---GSFSKFSEESFMNNP  199 (218)
Q Consensus       159 ~~~~~l~~L~~L~Ls~N~l~~~~~~----~---~~l~~L~~l~l~~N~  199 (218)
                      ..+...+.|+.|++++|.+.+....    .   .....|+.|++++|.
T Consensus       237 ~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~  284 (344)
T d2ca6a1         237 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE  284 (344)
T ss_dssp             HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             CCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCC
T ss_conf             433232211110300475671566788877631568888989898986

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=4.9e-11  Score=62.50  Aligned_cols=81  Identities=23%  Similarity=0.185  Sum_probs=35.2

Q ss_pred             CCCCCCEEECCCCCCCCCC--CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCH-------HC
Q ss_conf             9999988973378578778--80002688898897338857899961378999999898118848888981-------10
Q 027850           91 KLERLQYLELYMNNLAGQI--PKELGQLKSLISLDLYHNNLTGPIPPSLSRLSNLKFLRLNGNKLTGKIPR-------EL  161 (218)
Q Consensus        91 ~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-------~~  161 (218)
                      .++.|+.|++++|.++...  +..+..+++|+.|++++|.+....+-.......++.+++.+|.+......       .+
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~  142 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR  142 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred             HCCCCCEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf             48787886377766667731588986588561000435721342344222033104266489976767666156999999


Q ss_pred             CCCCCCCEEE
Q ss_conf             2899999998
Q 027850          162 TKLGNLKILD  171 (218)
Q Consensus       162 ~~l~~L~~L~  171 (218)
                      ..+++|+.||
T Consensus       143 ~~~P~L~~LD  152 (162)
T d1koha1         143 ERFPKLLRLD  152 (162)
T ss_dssp             TTSTTCCEET
T ss_pred             HHCCCCCEEC
T ss_conf             9889978799

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=3.2e-10  Score=58.91  Aligned_cols=134  Identities=20%  Similarity=0.149  Sum_probs=83.4

Q ss_pred             CCEEEEECCCCCCCCCC----CCCCCCCCCCCEEECCCCCCCCCCCCCC-----CCCCCCCEEECCCCCCCCCCCC----
Q ss_conf             97899983999973116----8456799999889733785787788000-----2688898897338857899961----
Q 027850           69 NRVTRLDLGNGKLSGNL----VPELGKLERLQYLELYMNNLAGQIPKEL-----GQLKSLISLDLYHNNLTGPIPP----  135 (218)
Q Consensus        69 ~~l~~L~Ls~~~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~p~~~-----~~l~~L~~L~ls~n~l~~~~p~----  135 (218)
                      ..++.++++++.+....    ...+...+.++.+++++|.+.......+     .....|+.++++++.+......    
T Consensus       255 ~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~  334 (460)
T d1z7xw1         255 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS  334 (460)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC
T ss_conf             11000013454332123343322111234333444443332245642111012333444333323334102334432133


Q ss_pred             CCCCCCCCCEEECCCCCCCCC----CCHHCC-CCCCCCEEEEECCCCCCC----CCCC-CCCCCCCCCCCCCCCCCCC
Q ss_conf             378999999898118848888----981102-899999998147814413----8999-9877778102347878889
Q 027850          136 SLSRLSNLKFLRLNGNKLTGK----IPRELT-KLGNLKILDVSNNDLCGT----IPTA-GSFSKFSEESFMNNPRLEG  203 (218)
Q Consensus       136 ~~~~l~~L~~L~l~~n~l~~~----~p~~~~-~l~~L~~L~Ls~N~l~~~----~~~~-~~l~~L~~l~l~~N~~l~~  203 (218)
                      .+....+|++|++++|.+...    +...+. ..+.|+.|++++|.++..    +... ...++|++|++++| .++.
T Consensus       335 ~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N-~i~~  411 (460)
T d1z7xw1         335 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN-CLGD  411 (460)
T ss_dssp             HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS-SCCH
T ss_pred             CCCCCCCHHHHHEEEECCCCCCCCHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCC-CCCH
T ss_conf             2211011113201210135766400111220456777889897997975999999999962998898989999-6987

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=2.3e-09  Score=55.12  Aligned_cols=105  Identities=24%  Similarity=0.187  Sum_probs=68.4

Q ss_pred             CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC--CCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCC
Q ss_conf             679999988973378578778800026888988973388578999--613789999998981188488889811028999
Q 027850           89 LGKLERLQYLELYMNNLAGQIPKELGQLKSLISLDLYHNNLTGPI--PPSLSRLSNLKFLRLNGNKLTGKIPRELTKLGN  166 (218)
Q Consensus        89 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~--p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  166 (218)
                      +..+..+..++...+... .++.....++.|+.|++++|+++...  +..+..+++|+.|++++|.++...+-.......
T Consensus        38 l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~  116 (162)
T d1koha1          38 LVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK  116 (162)
T ss_dssp             TTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCC
T ss_pred             HHHCCCHHHCCHHHHHHH-HHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCC
T ss_conf             554664011225556766-6078897487878863777666677315889865885610004357213423442220331


Q ss_pred             CCEEEEECCCCCCCCCCC--------CCCCCCCCCC
Q ss_conf             999981478144138999--------9877778102
Q 027850          167 LKILDVSNNDLCGTIPTA--------GSFSKFSEES  194 (218)
Q Consensus       167 L~~L~Ls~N~l~~~~~~~--------~~l~~L~~l~  194 (218)
                      |+.+++++|.+.......        ..+++|+.|+
T Consensus       117 L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         117 LEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             CSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             CCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEC
T ss_conf             042664899767676661569999999889978799

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.15  E-value=4.7e-07  Score=44.94  Aligned_cols=110  Identities=13%  Similarity=0.148  Sum_probs=67.8

Q ss_pred             CCCEEEEECCCC-CCCCC----CCCCCCCCCCCCEEECCCCCCCCC----CCCCCCCCCCCCEEECCCCCCCCC----CC
Q ss_conf             997899983999-97311----684567999998897337857877----880002688898897338857899----96
Q 027850           68 DNRVTRLDLGNG-KLSGN----LVPELGKLERLQYLELYMNNLAGQ----IPKELGQLKSLISLDLYHNNLTGP----IP  134 (218)
Q Consensus        68 ~~~l~~L~Ls~~-~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~----~p  134 (218)
                      ..+++.++++++ .+...    +-..+...+.|+.|++++|.+...    +...+...+.|+.|++++|.+...    +-
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEHHHCCHHHHHHHH
T ss_conf             99981978279999898999999999763776454012015621567988753100023433003301021459999999


Q ss_pred             CCCCCCCCCCEEECCCCCCCCC-------CCHHCCCCCCCCEEEEECCCC
Q ss_conf             1378999999898118848888-------981102899999998147814
Q 027850          135 PSLSRLSNLKFLRLNGNKLTGK-------IPRELTKLGNLKILDVSNNDL  177 (218)
Q Consensus       135 ~~~~~l~~L~~L~l~~n~l~~~-------~p~~~~~l~~L~~L~Ls~N~l  177 (218)
                      ..+...++|++|++++|.....       +...+..-++|+.++++.+..
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCC
T ss_conf             99984893898778877688865799999999997299853864868886

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.69  E-value=7.3e-06  Score=39.70  Aligned_cols=109  Identities=10%  Similarity=0.058  Sum_probs=67.4

Q ss_pred             CCCCCCCEEECCCC-CCCCC----CCCCCCCCCCCCEEECCCCCCCCC----CCCCCCCCCCCCEEECCCCCCCCCC---
Q ss_conf             79999988973378-57877----880002688898897338857899----9613789999998981188488889---
Q 027850           90 GKLERLQYLELYMN-NLAGQ----IPKELGQLKSLISLDLYHNNLTGP----IPPSLSRLSNLKFLRLNGNKLTGKI---  157 (218)
Q Consensus        90 ~~l~~L~~L~L~~n-~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~---  157 (218)
                      .+.+.|+.|+++++ .+...    +-..+...+.|+.|++++|.+...    +...+...+.|++|++++|.+....   
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             HCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEHHHCCHHHHHH
T ss_conf             28999819782799998989999999997637764540120156215679887531000234330033010214599999


Q ss_pred             -CHHCCCCCCCCEEEEECCCCCCCC-------CCC-CCCCCCCCCCCCCC
Q ss_conf             -811028999999981478144138-------999-98777781023478
Q 027850          158 -PRELTKLGNLKILDVSNNDLCGTI-------PTA-GSFSKFSEESFMNN  198 (218)
Q Consensus       158 -p~~~~~l~~L~~L~Ls~N~l~~~~-------~~~-~~l~~L~~l~l~~N  198 (218)
                       -..+..-++|++|++++|.+....       ... ..-++|+.++++.+
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCC
T ss_conf             99999848938987788776888657999999999972998538648688

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.31  E-value=1.4e-05  Score=38.50  Aligned_cols=109  Identities=17%  Similarity=0.170  Sum_probs=65.4

Q ss_pred             CCEEEEECCC-CCCCCC----CCCCCCCCCCCCEEECCCCCCCCCC----CCCCCCCCCCCEEECCCCCCCCC----CCC
Q ss_conf             9789998399-997311----6845679999988973378578778----80002688898897338857899----961
Q 027850           69 NRVTRLDLGN-GKLSGN----LVPELGKLERLQYLELYMNNLAGQI----PKELGQLKSLISLDLYHNNLTGP----IPP  135 (218)
Q Consensus        69 ~~l~~L~Ls~-~~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~ls~n~l~~~----~p~  135 (218)
                      ..++.+++++ +.+...    +-..+...++|+.|++++|.+....    -..+...+.++.++++++.+...    +..
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHH
T ss_conf             99868876899998989999999888419825743015896117789999987752122101210254322014788999


Q ss_pred             CCCCCCCCCEEECC--CCCCCC----CCCHHCCCCCCCCEEEEECCCC
Q ss_conf             37899999989811--884888----8981102899999998147814
Q 027850          136 SLSRLSNLKFLRLN--GNKLTG----KIPRELTKLGNLKILDVSNNDL  177 (218)
Q Consensus       136 ~~~~l~~L~~L~l~--~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l  177 (218)
                      .+...++++.+++.  .|.+..    .+...+...+.|+.|+++.+..
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCC
T ss_conf             998486524773216778676799999999998499847885818987

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.98  E-value=0.00079  Score=30.73  Aligned_cols=110  Identities=14%  Similarity=0.147  Sum_probs=66.0

Q ss_pred             CCCCCCCCEEECCC-CCCCCC----CCCCCCCCCCCCEEECCCCCCCCCC----CCCCCCCCCCCEEECCCCCCCCC---
Q ss_conf             67999998897337-857877----8800026888988973388578999----61378999999898118848888---
Q 027850           89 LGKLERLQYLELYM-NNLAGQ----IPKELGQLKSLISLDLYHNNLTGPI----PPSLSRLSNLKFLRLNGNKLTGK---  156 (218)
Q Consensus        89 ~~~l~~L~~L~L~~-n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~~----p~~~~~l~~L~~L~l~~n~l~~~---  156 (218)
                      ..+.+.|+.|++++ +.++..    +-.++...+.|+.|++++|.+....    ...+.....++.++++++.+...   
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HHCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHH
T ss_conf             95599986887689999898999999988841982574301589611778999998775212210121025432201478


Q ss_pred             -CCHHCCCCCCCCEEEEE--CCCCCCCC----CCC-CCCCCCCCCCCCCC
Q ss_conf             -98110289999999814--78144138----999-98777781023478
Q 027850          157 -IPRELTKLGNLKILDVS--NNDLCGTI----PTA-GSFSKFSEESFMNN  198 (218)
Q Consensus       157 -~p~~~~~l~~L~~L~Ls--~N~l~~~~----~~~-~~l~~L~~l~l~~N  198 (218)
                       +...+...++|+.++++  .|.+....    ... ...+.|+.+++..+
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCC
T ss_conf             89999984865247732167786767999999999984998478858189