Citrus Sinensis ID: 027856

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------
Protein Sequence
MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDPAALPKGQTINVGTKDDVSAVKKVGCCSN
Secondary Structure (PSIPRED)
cccccccccccEEEEEEEEccccccHHHHHHHHHccccccccccccEEEEEEEEEEEccEEEEEEEEcccccHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHHHHcccccEEEEEEEcccccccccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEEEEccccccHHHHHHHHHcccccccccccccEEEEEEEEEccccEEEEEEEEEcccHHHHHHHHHHHccccEEEEEEEcccHHHHHcHHHHHHHHHHHcccccEEEEEEEccccHHHccccHHHHHHHHHHHccEEEEcEccccEcHHHHHHHHHHHHHHHHcHHHccccccccccccccEEEcccccccccccccccccc
Coil and Loop (DISEMBL)
mgayradddydYLFKVVLIGdsgvgksnllsrftrnefsleskstigvefatrsircddkIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKaleigddpaalpkgqtinvgtkddvsavkkvgccsn
Flexible Loop (DISEMBL)
mgayradddydYLFKVVLIGdsgvgksnllsrftrnefsleskstigvefatrsircddkiVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLkelrdhtdsnIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALeigddpaalpkgqtinvgtkddvsavkkvgccsn
Low Complexity Region (SEG)
MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDPAALPKGQTINVGTKDDVSAVKKVGCCSN
Disordered region (IsUnstruct)
*******DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDD*********INV*****************
Disordered Region (DISOPRED)
******D****YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIY************************************VGCCS*
Disordered Region (DISEMBL)
MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDPAALPKGQTINVGTKDDVSAVKKVGCCSN
Disordered Region (DISPRO)
******DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKAL**********************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDPAALPKGQTINVGTKDDVSAVKKVGCCSN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	217	2.2.26 [Sep-21-2011]
Q9FJH0	217	Ras-related protein RABA1	yes	no	1.0	1.0	0.953	1e-119
Q40521	217	Ras-related protein Rab11	N/A	no	0.990	0.990	0.921	1e-114
Q9LK99	217	Ras-related protein RABA1	no	no	1.0	1.0	0.898	1e-113
Q9S810	218	Ras-related protein RABA1	no	no	0.995	0.990	0.889	1e-112
Q1PEX3	218	Ras-related protein RABA1	no	no	0.995	0.990	0.861	1e-108
O49513	217	Ras-related protein RABA1	no	no	0.995	0.995	0.833	1e-106
Q9SN35	214	Ras-related protein RABA1	no	no	0.981	0.995	0.807	1e-100
P40393	217	Ras-related protein RIC2	no	no	0.981	0.981	0.814	1e-99
Q9FK68	216	Ras-related protein RABA1	no	no	0.990	0.995	0.784	1e-97
Q01111	218	Ras-related protein YPT3	N/A	no	0.990	0.986	0.768	7e-97

>sp|Q9FJH0|RAA1F_ARATH Ras-related protein RABA1f OS=Arabidopsis thaliana GN=RABA1F PE=2 SV=1

 Score =  429 bits (1102), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/217 (95%), Positives = 212/217 (97%)

Query: 1   MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK 60
           M AYRADD+YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSI  DDK
Sbjct: 1   MAAYRADDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDDK 60

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV 120
           IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD+NIV
Sbjct: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIV 120

Query: 121 IMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSR 180
           IM VGNKADLRHLRAVSTEDA AFAERENTFFMETSALESMNVENAFTEVL+QIYRVVSR
Sbjct: 121 IMFVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLSQIYRVVSR 180

Query: 181 KALEIGDDPAALPKGQTINVGTKDDVSAVKKVGCCSN 217
           KAL+IGDDPAALPKGQTINVG+KDDVSAVKKVGCCSN
Sbjct: 181 KALDIGDDPAALPKGQTINVGSKDDVSAVKKVGCCSN 217

Intracellular vesicle trafficking and protein transport.
Arabidopsis thaliana (taxid: 3702)

>sp|Q40521|RB11B_TOBAC Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1

 Score =  412 bits (1059), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/216 (92%), Positives = 210/216 (97%), Gaps = 1/216 (0%)

Query: 2   GAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKI 61
           G YRA+DDYDYLFK+VLIGDSGVGKSNLLSRF+RNEF+LESKSTIGVEFATRSIR DDKI
Sbjct: 3   GGYRAEDDYDYLFKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKI 62

Query: 62  VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVI 121
           VKAQIWDTAGQERYRAITSAYYRGAVGAL+VYD+TRHVTFENVERWLKELRDHTD NIVI
Sbjct: 63  VKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVI 122

Query: 122 MLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRK 181
           MLVGNKADLRHLRAVSTEDA AFAERENTFFMETSALES+NVENAFTEVLT+IY+VV RK
Sbjct: 123 MLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAFTEVLTEIYKVVCRK 182

Query: 182 ALEIGDDPAALPKGQTINVGTKDDVSAVKKVGCCSN 217
           ALE+GDDPAALPKGQTINVG KDDVSAVKKVGCCS+
Sbjct: 183 ALEVGDDPAALPKGQTINVG-KDDVSAVKKVGCCSS 217

Nicotiana tabacum (taxid: 4097)

>sp|Q9LK99|RAA1G_ARATH Ras-related protein RABA1g OS=Arabidopsis thaliana GN=RABA1G PE=2 SV=1

 Score =  408 bits (1048), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 195/217 (89%), Positives = 208/217 (95%)

Query: 1   MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK 60
           M AYRADDDYD+L+KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSI  D+K
Sbjct: 1   MAAYRADDDYDFLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDEK 60

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV 120
           IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHT++NIV
Sbjct: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTEANIV 120

Query: 121 IMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSR 180
           IMLVGNKADLRHLRAVSTEDA AFAERENTFFMETSALE++NVENAFTEVL+QIYRV S+
Sbjct: 121 IMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALEALNVENAFTEVLSQIYRVASK 180

Query: 181 KALEIGDDPAALPKGQTINVGTKDDVSAVKKVGCCSN 217
           KAL+IGDD   LPKGQ+INVG+KDDVS VKKVGCCS+
Sbjct: 181 KALDIGDDHTTLPKGQSINVGSKDDVSEVKKVGCCSS 217

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S810|RAA1I_ARATH Ras-related protein RABA1i OS=Arabidopsis thaliana GN=RABA1I PE=2 SV=1

 Score =  402 bits (1034), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 193/217 (88%), Positives = 208/217 (95%), Gaps = 1/217 (0%)

Query: 1   MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK 60
           MGAYRA+DDYDYLFKVVL GDSGVGKSNLLSRFTRN+FS +S++TIGVEFATRSI+CDDK
Sbjct: 1   MGAYRAEDDYDYLFKVVLTGDSGVGKSNLLSRFTRNDFSHDSRATIGVEFATRSIQCDDK 60

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV 120
           IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD+NIV
Sbjct: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIV 120

Query: 121 IMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSR 180
           IMLVGNKADLRHLRA+STE+A AFAERENTFFMETSALE++NV+NAFTEVLTQIYRVVS+
Sbjct: 121 IMLVGNKADLRHLRAISTEEAKAFAERENTFFMETSALEAVNVDNAFTEVLTQIYRVVSK 180

Query: 181 KALEIGDDP-AALPKGQTINVGTKDDVSAVKKVGCCS 216
           KALE GDDP  ALPKGQ INVG +DD+SAVKK GCCS
Sbjct: 181 KALEAGDDPTTALPKGQMINVGGRDDISAVKKPGCCS 217

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q1PEX3|RAA1H_ARATH Ras-related protein RABA1h OS=Arabidopsis thaliana GN=RABA1H PE=2 SV=1

 Score =  389 bits (1000), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 187/217 (86%), Positives = 203/217 (93%), Gaps = 1/217 (0%)

Query: 1   MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK 60
           MG Y+A+DDYDYLFKVVL GDSGVGKSNLLSRFTRN+FS +S+STIGVEFATRSI+ DDK
Sbjct: 1   MGTYKAEDDYDYLFKVVLTGDSGVGKSNLLSRFTRNDFSHDSRSTIGVEFATRSIQVDDK 60

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV 120
           IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD+N V
Sbjct: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANTV 120

Query: 121 IMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSR 180
           IMLVGNKADL HLRA+STE+   FAERENTFFMETSALE++NVENAFTEVLTQIYRVVS+
Sbjct: 121 IMLVGNKADLNHLRAISTEEVKDFAERENTFFMETSALEAINVENAFTEVLTQIYRVVSK 180

Query: 181 KALEIGDDP-AALPKGQTINVGTKDDVSAVKKVGCCS 216
           KAL+ GDDP  ALPKGQ INVG++DDVSAVKK GCC+
Sbjct: 181 KALDAGDDPTTALPKGQMINVGSRDDVSAVKKSGCCA 217

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|O49513|RAA1E_ARATH Ras-related protein RABA1e OS=Arabidopsis thaliana GN=RABA1E PE=2 SV=1

 Score =  385 bits (990), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 180/216 (83%), Positives = 201/216 (93%)

Query: 1   MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK 60
           MGAYRADDDYDYLFK+VLIGDSGVGKSNLLSRFTRNEFS+ESKSTIGVEFATRS+  D+K
Sbjct: 1   MGAYRADDDYDYLFKLVLIGDSGVGKSNLLSRFTRNEFSIESKSTIGVEFATRSVHVDEK 60

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV 120
           I+KAQ+WDTAGQERYRAITSAYYRGAVGALLVYD+TRH+TFENVERWLKELRDHTD+N+V
Sbjct: 61  IIKAQLWDTAGQERYRAITSAYYRGAVGALLVYDITRHITFENVERWLKELRDHTDANVV 120

Query: 121 IMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSR 180
           IMLVGNKADLRHLRAV TE+A +F+EREN FFMETSAL++ NVE AFT VLTQIYRV+SR
Sbjct: 121 IMLVGNKADLRHLRAVPTEEARSFSERENMFFMETSALDATNVEQAFTHVLTQIYRVMSR 180

Query: 181 KALEIGDDPAALPKGQTINVGTKDDVSAVKKVGCCS 216
           KAL+   DP +LPKGQTI++G KDDV+AVK  GCCS
Sbjct: 181 KALDGTGDPMSLPKGQTIDIGNKDDVTAVKSSGCCS 216

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SN35|RAA1D_ARATH Ras-related protein RABA1d OS=Arabidopsis thaliana GN=RABA1D PE=2 SV=1

 Score =  363 bits (931), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 176/218 (80%), Positives = 194/218 (88%), Gaps = 5/218 (2%)

Query: 1   MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK 60
           M  YRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRS+  ++K
Sbjct: 1   MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVNEK 60

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV 120
           ++KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH TFENVERWL+ELRDHTD NIV
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV 120

Query: 121 IMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSR 180
           +MLVGNK+DLRHL AV TEDA +FAE E+ +FMETSALES NVENAF+EVLTQIY VVS+
Sbjct: 121 VMLVGNKSDLRHLVAVQTEDAKSFAENESLYFMETSALESTNVENAFSEVLTQIYHVVSK 180

Query: 181 KALEIGDDPAALP-KGQTINVGTKDDVSAVKKVGCCSN 217
           KA+E G+D   +P KG+ I+V    DVSAVKK GCCSN
Sbjct: 181 KAMEAGEDSGNVPSKGEKIDV----DVSAVKKTGCCSN 214

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|P40393|RIC2_ORYSJ Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2

 Score =  362 bits (929), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 176/216 (81%), Positives = 194/216 (89%), Gaps = 3/216 (1%)

Query: 3   AYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIV 62
            YRA+DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRS++ D K+V
Sbjct: 4   GYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKVV 63

Query: 63  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM 122
           KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH TFENVERWLKELRDHTD NIV+M
Sbjct: 64  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVVM 123

Query: 123 LVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKA 182
           LVGNK+DLRHL AV T++  AFAERE+ +FMETSALES NVENAF EVLTQIYR+VS+++
Sbjct: 124 LVGNKSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFAEVLTQIYRIVSKRS 183

Query: 183 LEIGDDPAALP-KGQTINVGTKDDVSAVKKVGCCSN 217
           +E GDD  + P KG+ IN+  KDDVSAVKK GCCS 
Sbjct: 184 VEAGDDAGSGPGKGEKINI--KDDVSAVKKGGCCSG 217

Possesses GTPase activity.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FK68|RAA1C_ARATH Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1

 Score =  355 bits (911), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 171/218 (78%), Positives = 192/218 (88%), Gaps = 3/218 (1%)

Query: 1   MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK 60
           M  YRADD+YDYLFKVVLIGDSGVGKSNLLSRFT+NEFSLESKSTIGVEFATRS+  DDK
Sbjct: 1   MAGYRADDEYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDK 60

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV 120
           ++KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH TFENVE WLKELR+HTD NIV
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIV 120

Query: 121 IMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSR 180
           +MLVGNK+DLRHL AV TEDA +FAE+E+ +FMETSALE+ NVENAF EVLTQI+ +VS+
Sbjct: 121 VMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSK 180

Query: 181 KALEIGDDPAALP-KGQTINVGTKDDVSAVKKVGCCSN 217
           KA+E   + A +P KG  I++G   DVSAVKK GCCSN
Sbjct: 181 KAMEAASESANVPSKGDKIDIGK--DVSAVKKGGCCSN 216

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q01111|YPT3_NICPL Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1

 Score =  353 bits (905), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 169/220 (76%), Positives = 195/220 (88%), Gaps = 5/220 (2%)

Query: 1   MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK 60
           M  YRADD+YDYLFK+VLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFAT+S+  D+K
Sbjct: 1   MAGYRADDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNK 60

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV 120
           ++KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVT+ENV RWLKELRDHTD NIV
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIV 120

Query: 121 IMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSR 180
           +ML+GNK+DLRHL AVST++A   AERE  +FMETSALE+ NVENAFTE LTQIYR+VS+
Sbjct: 121 VMLIGNKSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYRIVSK 180

Query: 181 KALEIGDDPA---ALPKGQTINVGTKDDVSAVKKVGCCSN 217
           KA+E GD+ A   A PKG+TIN+  KD+ S+ KK GCCS+
Sbjct: 181 KAVEAGDEGATSSAPPKGETINI--KDEGSSWKKFGCCSS 218

Protein transport. Probably involved in vesicular traffic.

Nicotiana plumbaginifolia (taxid: 4092)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
225443554	217	PREDICTED: ras-related protein RABA1f [V	0.995	0.995	0.967	1e-119
297793649	217	hypothetical protein ARALYDRAFT_919325 [	1.0	1.0	0.958	1e-118
15239462	217	RAB GTPase homolog A1F [Arabidopsis thal	1.0	1.0	0.953	1e-118
357446819	217	GTP-binding protein ras-like protein [Me	0.995	0.995	0.944	1e-117
388512933	217	unknown [Lotus japonicus]	1.0	1.0	0.940	1e-117
449456603	217	PREDICTED: ras-related protein RABA1f-li	1.0	1.0	0.949	1e-117
356548648	217	PREDICTED: ras-related protein RABA1f-li	0.995	0.995	0.944	1e-117
357474509	217	GTP-binding protein ras-like protein [Me	0.995	0.995	0.944	1e-117
255563016	217	protein with unknown function [Ricinus c	1.0	1.0	0.930	1e-117
303742	217	GTP-binding protein [Pisum sativum] gi|7	0.995	0.995	0.935	1e-116

>gi|225443554|ref|XP_002277579.1| PREDICTED: ras-related protein RABA1f [Vitis vinifera]

 Score =  432 bits (1110), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 209/216 (96%), Positives = 212/216 (98%)

Query: 1   MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK 60
           M +YRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIR DDK
Sbjct: 1   MASYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVDDK 60

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV 120
           +VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV
Sbjct: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV 120

Query: 121 IMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSR 180
           IMLVGNKADLRHLRAVSTEDA AFAEREN FFMETSALESMNVENAFTEVLTQIYRVVSR
Sbjct: 121 IMLVGNKADLRHLRAVSTEDAKAFAERENNFFMETSALESMNVENAFTEVLTQIYRVVSR 180

Query: 181 KALEIGDDPAALPKGQTINVGTKDDVSAVKKVGCCS 216
           KAL+IGDDPAALPKGQTINVGTKDDVSAVKKVGCCS
Sbjct: 181 KALDIGDDPAALPKGQTINVGTKDDVSAVKKVGCCS 216

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793649|ref|XP_002864709.1| hypothetical protein ARALYDRAFT_919325 [Arabidopsis lyrata subsp. lyrata] gi|297310544|gb|EFH40968.1| hypothetical protein ARALYDRAFT_919325 [Arabidopsis lyrata subsp. lyrata]

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/217 (95%), Positives = 212/217 (97%)

Query: 1   MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK 60
           M AYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSI  DDK
Sbjct: 1   MAAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDDK 60

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV 120
           IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFEN+ERWLKELRDHTDSNIV
Sbjct: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENLERWLKELRDHTDSNIV 120

Query: 121 IMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSR 180
           IM VGNKADLRHLRAVSTEDA AFAERENTFFMETSALESMNVENAFTEVL+QIYRVVSR
Sbjct: 121 IMFVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLSQIYRVVSR 180

Query: 181 KALEIGDDPAALPKGQTINVGTKDDVSAVKKVGCCSN 217
           KAL+IGDDPAALPKGQTINVG+KDDVSAVKKVGCCSN
Sbjct: 181 KALDIGDDPAALPKGQTINVGSKDDVSAVKKVGCCSN 217

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239462|ref|NP_200894.1| RAB GTPase homolog A1F [Arabidopsis thaliana] gi|75171043|sp|Q9FJH0.1|RAA1F_ARATH RecName: Full=Ras-related protein RABA1f; Short=AtRABA1f gi|10176913|dbj|BAB10106.1| GTP-binding protein, ras-like [Arabidopsis thaliana] gi|26452359|dbj|BAC43265.1| putative GTP-binding protein [Arabidopsis thaliana] gi|28950757|gb|AAO63302.1| At5g60860 [Arabidopsis thaliana] gi|332010004|gb|AED97387.1| RAB GTPase homolog A1F [Arabidopsis thaliana]

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/217 (95%), Positives = 212/217 (97%)

Query: 1   MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK 60
           M AYRADD+YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSI  DDK
Sbjct: 1   MAAYRADDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDDK 60

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV 120
           IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD+NIV
Sbjct: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIV 120

Query: 121 IMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSR 180
           IM VGNKADLRHLRAVSTEDA AFAERENTFFMETSALESMNVENAFTEVL+QIYRVVSR
Sbjct: 121 IMFVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLSQIYRVVSR 180

Query: 181 KALEIGDDPAALPKGQTINVGTKDDVSAVKKVGCCSN 217
           KAL+IGDDPAALPKGQTINVG+KDDVSAVKKVGCCSN
Sbjct: 181 KALDIGDDPAALPKGQTINVGSKDDVSAVKKVGCCSN 217

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357446819|ref|XP_003593685.1| GTP-binding protein ras-like protein [Medicago truncatula] gi|355482733|gb|AES63936.1| GTP-binding protein ras-like protein [Medicago truncatula]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/216 (94%), Positives = 213/216 (98%)

Query: 1   MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK 60
           MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFT+NEFSLESKSTIGVEFATRSIR DDK
Sbjct: 1   MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDK 60

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV 120
           +VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD+NIV
Sbjct: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIV 120

Query: 121 IMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSR 180
           +MLVGNKADLRHLRAVSTED+TAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVS+
Sbjct: 121 VMLVGNKADLRHLRAVSTEDSTAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSK 180

Query: 181 KALEIGDDPAALPKGQTINVGTKDDVSAVKKVGCCS 216
           KALEIGDDP ALPKGQTI+VG++DDVSAVKK GCCS
Sbjct: 181 KALEIGDDPTALPKGQTIDVGSRDDVSAVKKSGCCS 216

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512933|gb|AFK44528.1| unknown [Lotus japonicus]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/217 (94%), Positives = 214/217 (98%)

Query: 1   MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK 60
           MGAYRADDDYDY FKVVLIGDSGVGKSNLLSRFT+NEFSLESKSTIGVEFATRSIR DDK
Sbjct: 1   MGAYRADDDYDYPFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDK 60

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV 120
           +VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD+NIV
Sbjct: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDTNIV 120

Query: 121 IMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSR 180
           +MLVGNKADLRHLRAVSTED+TAFAERENTFFMETSALES+NVENAFTEVLTQIYRVVS+
Sbjct: 121 VMLVGNKADLRHLRAVSTEDSTAFAERENTFFMETSALESLNVENAFTEVLTQIYRVVSK 180

Query: 181 KALEIGDDPAALPKGQTINVGTKDDVSAVKKVGCCSN 217
           KALEIGDDPAALPKGQTINVG++DDVSAVKK GCCS+
Sbjct: 181 KALEIGDDPAALPKGQTINVGSRDDVSAVKKSGCCSS 217

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456603|ref|XP_004146038.1| PREDICTED: ras-related protein RABA1f-like [Cucumis sativus] gi|449510339|ref|XP_004163637.1| PREDICTED: ras-related protein RABA1f-like [Cucumis sativus] gi|307135941|gb|ADN33802.1| GTP-binding protein [Cucumis melo subsp. melo]

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 206/217 (94%), Positives = 211/217 (97%)

Query: 1   MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK 60
           M AYR DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIR DDK
Sbjct: 1   MAAYRTDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVDDK 60

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV 120
           IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV
Sbjct: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV 120

Query: 121 IMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSR 180
           IMLVGNKADLRHLRAVSTEDA AFAE+ENTFFMETSALES+NVENAFTEVLTQIYRVV R
Sbjct: 121 IMLVGNKADLRHLRAVSTEDAQAFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVCR 180

Query: 181 KALEIGDDPAALPKGQTINVGTKDDVSAVKKVGCCSN 217
           KALEIG+DPAALPKGQTINVG KDDVSA+KKVGCCS+
Sbjct: 181 KALEIGEDPAALPKGQTINVGNKDDVSAMKKVGCCSS 217

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548648|ref|XP_003542712.1| PREDICTED: ras-related protein RABA1f-like [Glycine max]

 Score =  425 bits (1092), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/216 (94%), Positives = 211/216 (97%)

Query: 1   MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK 60
           MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIR DDK
Sbjct: 1   MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVDDK 60

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV 120
           +VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD+NIV
Sbjct: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIV 120

Query: 121 IMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSR 180
           +MLVGNKADLRHLRAVSTEDA  FAERENTFFMETSALES+NVENAFTEVLTQIY VVS+
Sbjct: 121 VMLVGNKADLRHLRAVSTEDARTFAERENTFFMETSALESLNVENAFTEVLTQIYHVVSK 180

Query: 181 KALEIGDDPAALPKGQTINVGTKDDVSAVKKVGCCS 216
           KALEIGDDPAALPKGQTINVG++DDVSAVKK GCCS
Sbjct: 181 KALEIGDDPAALPKGQTINVGSRDDVSAVKKSGCCS 216

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357474509|ref|XP_003607539.1| GTP-binding protein ras-like protein [Medicago truncatula] gi|355508594|gb|AES89736.1| GTP-binding protein ras-like protein [Medicago truncatula]

 Score =  425 bits (1092), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/216 (94%), Positives = 212/216 (98%)

Query: 1   MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK 60
           MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFT+NEFSLESKSTIGVEFATRSI  DDK
Sbjct: 1   MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIHVDDK 60

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV 120
           IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD+NIV
Sbjct: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIV 120

Query: 121 IMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSR 180
           IMLVGNKADLRHLRAVST+DA AFAERENTFFMETSALES+NV+N+FTEVLTQIYRVVSR
Sbjct: 121 IMLVGNKADLRHLRAVSTDDAKAFAERENTFFMETSALESLNVDNSFTEVLTQIYRVVSR 180

Query: 181 KALEIGDDPAALPKGQTINVGTKDDVSAVKKVGCCS 216
           K LEIGDDPAALPKGQTINVG++DDVSAVKKVGCCS
Sbjct: 181 KTLEIGDDPAALPKGQTINVGSRDDVSAVKKVGCCS 216

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563016|ref|XP_002522512.1| protein with unknown function [Ricinus communis] gi|223538203|gb|EEF39812.1| protein with unknown function [Ricinus communis]

 Score =  424 bits (1091), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 202/217 (93%), Positives = 213/217 (98%)

Query: 1   MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK 60
           MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSI  DDK
Sbjct: 1   MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDDK 60

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV 120
           +VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD+NIV
Sbjct: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIV 120

Query: 121 IMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSR 180
           IMLVGNKADLRHLRA++ EDATAFA+R+NTFFMETSALESMNVENAFTEVLTQIYRVVSR
Sbjct: 121 IMLVGNKADLRHLRAITIEDATAFAQRQNTFFMETSALESMNVENAFTEVLTQIYRVVSR 180

Query: 181 KALEIGDDPAALPKGQTINVGTKDDVSAVKKVGCCSN 217
           KAL+IGDDPAALP+GQTINVG++DDVSAVKK GCCS+
Sbjct: 181 KALDIGDDPAALPRGQTINVGSRDDVSAVKKAGCCSS 217

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|303742|dbj|BAA02112.1| GTP-binding protein [Pisum sativum] gi|738936|prf||2001457D GTP-binding protein

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/216 (93%), Positives = 214/216 (99%)

Query: 1   MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK 60
           MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFT+NEFSLESKSTIGVEFATRSIR DDK
Sbjct: 1   MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDK 60

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV 120
           +VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD+NIV
Sbjct: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIV 120

Query: 121 IMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSR 180
           +MLVGNKADLRHLRAVSTED+T+FAERE+TFFMETSALES+NVE+AFTEVLTQIYRVVS+
Sbjct: 121 VMLVGNKADLRHLRAVSTEDSTSFAEREHTFFMETSALESLNVESAFTEVLTQIYRVVSK 180

Query: 181 KALEIGDDPAALPKGQTINVGTKDDVSAVKKVGCCS 216
           KALEIGDDPAALPKGQTINVG++DDVSAVKK GCCS
Sbjct: 181 KALEIGDDPAALPKGQTINVGSRDDVSAVKKGGCCS 216

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
TAIR|locus:2159285	217	RABA1f "RAB GTPase homolog A1F	1.0	1.0	0.953	1.2e-106
TAIR|locus:2086290	217	RABA1g "RAB GTPase homolog A1G	1.0	1.0	0.898	3e-101
TAIR|locus:2018698	218	RABA1i "RAB GTPase homolog A1I	0.995	0.990	0.889	1.3e-100
TAIR|locus:2057624	218	ArRABA1h "RAB GTPase homolog A	0.995	0.990	0.861	4.1e-97
TAIR|locus:2124593	217	RABA1e "RAB GTPase homolog A1E	0.995	0.995	0.833	9.7e-96
TAIR|locus:2124092	214	RABA1d "RAB GTPase homolog A1D	0.981	0.995	0.807	1.4e-89
TAIR|locus:2171943	216	RABA1c "RAB GTPase homolog A1C	0.990	0.995	0.784	1.4e-87
TAIR|locus:2015576	216	RABA1b "RAB GTPase homolog A1B	0.990	0.995	0.756	1.8e-85
TAIR|locus:2202280	216	ARA-2 [Arabidopsis thaliana (t	0.990	0.995	0.733	4.4e-84
UNIPROTKB|Q3MHP2	218	RAB11B "Ras-related protein Ra	0.963	0.958	0.706	5e-76

TAIR|locus:2159285 RABA1f "RAB GTPase homolog A1F" [Arabidopsis thaliana (taxid:3702)]

 Score = 1055 (376.4 bits), Expect = 1.2e-106, P = 1.2e-106
 Identities = 207/217 (95%), Positives = 212/217 (97%)

Query:     1 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK 60
             M AYRADD+YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSI  DDK
Sbjct:     1 MAAYRADDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDDK 60

Query:    61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV 120
             IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD+NIV
Sbjct:    61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIV 120

Query:   121 IMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSR 180
             IM VGNKADLRHLRAVSTEDA AFAERENTFFMETSALESMNVENAFTEVL+QIYRVVSR
Sbjct:   121 IMFVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLSQIYRVVSR 180

Query:   181 KALEIGDDPAALPKGQTINVGTKDDVSAVKKVGCCSN 217
             KAL+IGDDPAALPKGQTINVG+KDDVSAVKKVGCCSN
Sbjct:   181 KALDIGDDPAALPKGQTINVGSKDDVSAVKKVGCCSN 217

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005829 "cytosol" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2086290 RABA1g "RAB GTPase homolog A1G" [Arabidopsis thaliana (taxid:3702)]

 Score = 1004 (358.5 bits), Expect = 3.0e-101, P = 3.0e-101
 Identities = 195/217 (89%), Positives = 208/217 (95%)

Query:     1 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK 60
             M AYRADDDYD+L+KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSI  D+K
Sbjct:     1 MAAYRADDDYDFLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDEK 60

Query:    61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV 120
             IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHT++NIV
Sbjct:    61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTEANIV 120

Query:   121 IMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSR 180
             IMLVGNKADLRHLRAVSTEDA AFAERENTFFMETSALE++NVENAFTEVL+QIYRV S+
Sbjct:   121 IMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALEALNVENAFTEVLSQIYRVASK 180

Query:   181 KALEIGDDPAALPKGQTINVGTKDDVSAVKKVGCCSN 217
             KAL+IGDD   LPKGQ+INVG+KDDVS VKKVGCCS+
Sbjct:   181 KALDIGDDHTTLPKGQSINVGSKDDVSEVKKVGCCSS 217

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2018698 RABA1i "RAB GTPase homolog A1I" [Arabidopsis thaliana (taxid:3702)]

 Score = 998 (356.4 bits), Expect = 1.3e-100, P = 1.3e-100
 Identities = 193/217 (88%), Positives = 208/217 (95%)

Query:     1 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK 60
             MGAYRA+DDYDYLFKVVL GDSGVGKSNLLSRFTRN+FS +S++TIGVEFATRSI+CDDK
Sbjct:     1 MGAYRAEDDYDYLFKVVLTGDSGVGKSNLLSRFTRNDFSHDSRATIGVEFATRSIQCDDK 60

Query:    61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV 120
             IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD+NIV
Sbjct:    61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIV 120

Query:   121 IMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSR 180
             IMLVGNKADLRHLRA+STE+A AFAERENTFFMETSALE++NV+NAFTEVLTQIYRVVS+
Sbjct:   121 IMLVGNKADLRHLRAISTEEAKAFAERENTFFMETSALEAVNVDNAFTEVLTQIYRVVSK 180

Query:   181 KALEIGDDPA-ALPKGQTINVGTKDDVSAVKKVGCCS 216
             KALE GDDP  ALPKGQ INVG +DD+SAVKK GCCS
Sbjct:   181 KALEAGDDPTTALPKGQMINVGGRDDISAVKKPGCCS 217

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

TAIR|locus:2057624 ArRABA1h "RAB GTPase homolog A1H" [Arabidopsis thaliana (taxid:3702)]

 Score = 965 (344.8 bits), Expect = 4.1e-97, P = 4.1e-97
 Identities = 187/217 (86%), Positives = 203/217 (93%)

Query:     1 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK 60
             MG Y+A+DDYDYLFKVVL GDSGVGKSNLLSRFTRN+FS +S+STIGVEFATRSI+ DDK
Sbjct:     1 MGTYKAEDDYDYLFKVVLTGDSGVGKSNLLSRFTRNDFSHDSRSTIGVEFATRSIQVDDK 60

Query:    61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV 120
             IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD+N V
Sbjct:    61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANTV 120

Query:   121 IMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSR 180
             IMLVGNKADL HLRA+STE+   FAERENTFFMETSALE++NVENAFTEVLTQIYRVVS+
Sbjct:   121 IMLVGNKADLNHLRAISTEEVKDFAERENTFFMETSALEAINVENAFTEVLTQIYRVVSK 180

Query:   181 KALEIGDDPA-ALPKGQTINVGTKDDVSAVKKVGCCS 216
             KAL+ GDDP  ALPKGQ INVG++DDVSAVKK GCC+
Sbjct:   181 KALDAGDDPTTALPKGQMINVGSRDDVSAVKKSGCCA 217

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

TAIR|locus:2124593 RABA1e "RAB GTPase homolog A1E" [Arabidopsis thaliana (taxid:3702)]

 Score = 952 (340.2 bits), Expect = 9.7e-96, P = 9.7e-96
 Identities = 180/216 (83%), Positives = 201/216 (93%)

Query:     1 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK 60
             MGAYRADDDYDYLFK+VLIGDSGVGKSNLLSRFTRNEFS+ESKSTIGVEFATRS+  D+K
Sbjct:     1 MGAYRADDDYDYLFKLVLIGDSGVGKSNLLSRFTRNEFSIESKSTIGVEFATRSVHVDEK 60

Query:    61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV 120
             I+KAQ+WDTAGQERYRAITSAYYRGAVGALLVYD+TRH+TFENVERWLKELRDHTD+N+V
Sbjct:    61 IIKAQLWDTAGQERYRAITSAYYRGAVGALLVYDITRHITFENVERWLKELRDHTDANVV 120

Query:   121 IMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSR 180
             IMLVGNKADLRHLRAV TE+A +F+EREN FFMETSAL++ NVE AFT VLTQIYRV+SR
Sbjct:   121 IMLVGNKADLRHLRAVPTEEARSFSERENMFFMETSALDATNVEQAFTHVLTQIYRVMSR 180

Query:   181 KALEIGDDPAALPKGQTINVGTKDDVSAVKKVGCCS 216
             KAL+   DP +LPKGQTI++G KDDV+AVK  GCCS
Sbjct:   181 KALDGTGDPMSLPKGQTIDIGNKDDVTAVKSSGCCS 216

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2124092 RABA1d "RAB GTPase homolog A1D" [Arabidopsis thaliana (taxid:3702)]

 Score = 894 (319.8 bits), Expect = 1.4e-89, P = 1.4e-89
 Identities = 176/218 (80%), Positives = 194/218 (88%)

Query:     1 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK 60
             M  YRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRS+  ++K
Sbjct:     1 MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVNEK 60

Query:    61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV 120
             ++KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH TFENVERWL+ELRDHTD NIV
Sbjct:    61 VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV 120

Query:   121 IMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSR 180
             +MLVGNK+DLRHL AV TEDA +FAE E+ +FMETSALES NVENAF+EVLTQIY VVS+
Sbjct:   121 VMLVGNKSDLRHLVAVQTEDAKSFAENESLYFMETSALESTNVENAFSEVLTQIYHVVSK 180

Query:   181 KALEIGDDPAALP-KGQTINVGTKDDVSAVKKVGCCSN 217
             KA+E G+D   +P KG+ I+V    DVSAVKK GCCSN
Sbjct:   181 KAMEAGEDSGNVPSKGEKIDV----DVSAVKKTGCCSN 214

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0031901 "early endosome membrane" evidence=IDA

GO:0032588 "trans-Golgi network membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2171943 RABA1c "RAB GTPase homolog A1C" [Arabidopsis thaliana (taxid:3702)]

 Score = 875 (313.1 bits), Expect = 1.4e-87, P = 1.4e-87
 Identities = 171/218 (78%), Positives = 192/218 (88%)

Query:     1 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK 60
             M  YRADD+YDYLFKVVLIGDSGVGKSNLLSRFT+NEFSLESKSTIGVEFATRS+  DDK
Sbjct:     1 MAGYRADDEYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDK 60

Query:    61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV 120
             ++KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH TFENVE WLKELR+HTD NIV
Sbjct:    61 VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIV 120

Query:   121 IMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSR 180
             +MLVGNK+DLRHL AV TEDA +FAE+E+ +FMETSALE+ NVENAF EVLTQI+ +VS+
Sbjct:   121 VMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSK 180

Query:   181 KALEIGDDPAALP-KGQTINVGTKDDVSAVKKVGCCSN 217
             KA+E   + A +P KG  I++G   DVSAVKK GCCSN
Sbjct:   181 KAMEAASESANVPSKGDKIDIGK--DVSAVKKGGCCSN 216

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2015576 RABA1b "RAB GTPase homolog A1B" [Arabidopsis thaliana (taxid:3702)]

 Score = 855 (306.0 bits), Expect = 1.8e-85, P = 1.8e-85
 Identities = 165/218 (75%), Positives = 193/218 (88%)

Query:     1 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK 60
             M  YR +DDYDYLFKVVLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFATR+++ D K
Sbjct:     1 MAGYRVEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGK 60

Query:    61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV 120
             +VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR  TFENV+RWLKEL++HTD NIV
Sbjct:    61 VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIV 120

Query:   121 IMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSR 180
             +MLVGNK+DLRHL AV TED  ++AE+E+  FMETSALE+ NVE+AF EVLTQIYR+ S+
Sbjct:   121 VMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSK 180

Query:   181 KALEIGDDP-AALPKGQTINVGTKDDVSAVKKVGCCSN 217
             K +E G+D  A++PKG+ I V  K+DVSA+KK+GCCSN
Sbjct:   181 KQVEAGEDGNASVPKGEKIEV--KNDVSALKKLGCCSN 216

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=NAS

GO:0016020 "membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=TAS

GO:0005773 "vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=IMP

TAIR|locus:2202280 ARA-2 [Arabidopsis thaliana (taxid:3702)]

 Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
 Identities = 160/218 (73%), Positives = 193/218 (88%)

Query:     1 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK 60
             M  YRAD++YDYLFK+VLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFAT++ + + K
Sbjct:     1 MAGYRADEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGK 60

Query:    61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV 120
             +VKAQIWDTAGQERYRAITSAYYRGAVGALL+YDVTRH TFEN  RWL+ELR HTD NIV
Sbjct:    61 VVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIV 120

Query:   121 IMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSR 180
             +ML+GNK DLRHL AV TE+A AFAERE+ +FMETSAL++ NVENAFTEVLTQI+++VS+
Sbjct:   121 VMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSK 180

Query:   181 KALEIGDDPAALP-KGQTINVGTKDDVSAVKKVGCCSN 217
             ++++ G + A LP KG+TINV  K+D S +K++GCCSN
Sbjct:   181 RSVDGGGESADLPGKGETINV--KEDGSVLKRMGCCSN 216

GO:0005525 "GTP binding" evidence=IEA;ISS;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009733 "response to auxin stimulus" evidence=IMP

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

GO:0003924 "GTPase activity" evidence=IDA

UNIPROTKB|Q3MHP2 RAB11B "Ras-related protein Rab-11B" [Bos taurus (taxid:9913)]

 Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
 Identities = 152/215 (70%), Positives = 175/215 (81%)

Query:     7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQI 66
             DD+YDYLFKVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRSI+ D K +KAQI
Sbjct:     5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 64

Query:    67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGN 126
             WDTAGQERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH DSNIVIMLVGN
Sbjct:    65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 124

Query:   127 KADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIG 186
             K+DLRHLRAV T++A AFAE+ N  F+ETSAL+S NVE AF  +LT+IYR+VS+K  +I 
Sbjct:   125 KSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQK--QIA 182

Query:   187 DDPA--ALPKGQTINVGTKDDVSAVK--KVGCCSN 217
             D  A    P    +++         K  K+ CC N
Sbjct:   183 DRAAHDESPGNNVVDISVPPTTDGQKPNKLQCCQN 217

GO:0045335 "phagocytic vesicle" evidence=ISS

GO:0055037 "recycling endosome" evidence=ISS

GO:0032402 "melanosome transport" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0030670 "phagocytic vesicle membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q15907	RB11B_HUMAN	No assigned EC number	0.7069	0.9631	0.9587	no	no
Q40520	RB11C_TOBAC	No assigned EC number	0.5852	0.9677	0.9459	N/A	no
Q5R9M7	RB11A_PONAB	No assigned EC number	0.7014	0.9723	0.9768	yes	no
Q40523	RB11A_TOBAC	No assigned EC number	0.6682	0.9723	0.9768	N/A	no
Q1PEX3	RAA1H_ARATH	No assigned EC number	0.8617	0.9953	0.9908	no	no
Q40521	RB11B_TOBAC	No assigned EC number	0.9212	0.9907	0.9907	N/A	no
Q40195	RB11E_LOTJA	No assigned EC number	0.7409	0.9907	0.9862	N/A	no
Q40194	RB11D_LOTJA	No assigned EC number	0.7671	0.9861	0.9816	N/A	no
Q9FJH0	RAA1F_ARATH	No assigned EC number	0.9539	1.0	1.0	yes	no
Q40191	RB11A_LOTJA	No assigned EC number	0.6139	0.9631	0.9247	N/A	no
Q39222	RAA1B_ARATH	No assigned EC number	0.7568	0.9907	0.9953	no	no
P17610	YPT3_SCHPO	No assigned EC number	0.6872	0.9631	0.9766	yes	no
Q40193	RB11C_LOTJA	No assigned EC number	0.6774	0.9723	0.9768	N/A	no
P40393	RIC2_ORYSJ	No assigned EC number	0.8148	0.9815	0.9815	no	no
Q9S810	RAA1I_ARATH	No assigned EC number	0.8894	0.9953	0.9908	no	no
P28185	RAA1A_ARATH	No assigned EC number	0.7339	0.9907	0.9953	no	no
Q9FK68	RAA1C_ARATH	No assigned EC number	0.7844	0.9907	0.9953	no	no
P36412	RB11A_DICDI	No assigned EC number	0.6186	0.9861	1.0	yes	no
O35509	RB11B_RAT	No assigned EC number	0.7069	0.9631	0.9587	no	no
Q39434	RB2BV_BETVU	No assigned EC number	0.6837	0.9723	0.9859	N/A	no
Q9LK99	RAA1G_ARATH	No assigned EC number	0.8986	1.0	1.0	no	no
Q01111	YPT3_NICPL	No assigned EC number	0.7681	0.9907	0.9862	N/A	no
P46638	RB11B_MOUSE	No assigned EC number	0.7023	0.9631	0.9587	no	no
Q5ZJN2	RB11A_CHICK	No assigned EC number	0.6966	0.9723	0.9768	yes	no
P22129	RB11B_DIPOM	No assigned EC number	0.6948	0.9723	0.9678	N/A	no
Q3MHP2	RB11B_BOVIN	No assigned EC number	0.7069	0.9631	0.9587	yes	no
P38555	YPT31_YEAST	No assigned EC number	0.5674	0.9539	0.9282	yes	no
Q40522	RB11D_TOBAC	No assigned EC number	0.5990	0.9677	0.9459	N/A	no
Q9SN35	RAA1D_ARATH	No assigned EC number	0.8073	0.9815	0.9953	no	no
O49513	RAA1E_ARATH	No assigned EC number	0.8333	0.9953	0.9953	no	no
Q39572	YPTC6_CHLRE	No assigned EC number	0.7302	0.9861	0.9907	N/A	no
Q52NJ1	RB11A_PIG	No assigned EC number	0.7014	0.9723	0.9768	yes	no
P62491	RB11A_HUMAN	No assigned EC number	0.7014	0.9723	0.9768	yes	no
P62490	RB11A_CANFA	No assigned EC number	0.7014	0.9723	0.9768	yes	no
P62493	RB11A_RABIT	No assigned EC number	0.7014	0.9723	0.9768	yes	no
P62492	RB11A_MOUSE	No assigned EC number	0.7014	0.9723	0.9768	yes	no
P62494	RB11A_RAT	No assigned EC number	0.7014	0.9723	0.9768	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00003022001 SubName- Full=Chromosome chr10 scaffold_138, whole genome shotgun sequence; (217 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	217
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	1e-128
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	1e-114
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	1e-105
pfam00071	162	pfam00071, Ras, Ras family	1e-89
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	2e-85
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	1e-73
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	1e-71
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	3e-69
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	4e-68
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	8e-68
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	1e-65
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	2e-64
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	4e-62
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	2e-59
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	2e-58
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	1e-57
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	2e-55
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	3e-53
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	1e-52
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	5e-52
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	3e-50
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	7e-47
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	8e-46
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	1e-45
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	6e-45
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	2e-44
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	1e-43
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	4e-43
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	1e-42
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	1e-42
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	1e-40
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	3e-40
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	1e-38
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	3e-37
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	3e-37
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	2e-36
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	1e-34
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	2e-32
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	5e-32
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	2e-31
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	5e-31
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	1e-30
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	8e-30
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	1e-29
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	3e-29
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	4e-29
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	1e-28
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	1e-28
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	4e-28
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	4e-27
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	4e-27
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	5e-27
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	6e-27
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	2e-26
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	1e-25
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	2e-25
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	4e-25
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	7e-25
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	1e-24
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	2e-24
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	4e-24
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	7e-24
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	1e-22
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	1e-22
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	1e-21
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	1e-21
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	1e-21
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	2e-21
pfam08477	116	pfam08477, Miro, Miro-like protein	3e-20
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	7e-19
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	2e-18
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	6e-18
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	1e-17
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	3e-17
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	5e-17
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	4e-16
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	3e-15
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	3e-15
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	1e-14
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	7e-14
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	3e-13
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	6e-12
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	1e-11
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	2e-10
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	3e-10
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	9e-10
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	5e-09
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	7e-09
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	2e-08
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	3e-08
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	9e-08
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	1e-07
cd01897	167	cd01897, NOG, Nucleolar GTP-binding protein (NOG)	2e-07
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	3e-07
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	8e-07
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	1e-06
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	1e-06
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	2e-06
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	3e-06
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	6e-06
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	2e-05
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	1e-04
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	2e-04
COG0486	454	COG0486, ThdF, Predicted GTPase [General function	0.002
pfam05783	490	pfam05783, DLIC, Dynein light intermediate chain (	0.003

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  358 bits (922), Expect = e-128
 Identities = 133/165 (80%), Positives = 149/165 (90%)

Query: 11  DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTA 70
           DYLFK+VLIGDSGVGKSNLLSRFTRNEF+L+SKSTIGVEFATR+I+ D K +KAQIWDTA
Sbjct: 1   DYLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTA 60

Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL 130
           GQERYRAITSAYYRGAVGALLVYD+T+  TFENVERWLKELRDH DSNIVIMLVGNK+DL
Sbjct: 61  GQERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHADSNIVIMLVGNKSDL 120

Query: 131 RHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
           RHLRAV TE+A AFAE+    F+ETSAL+  NVE AF ++LT+IY
Sbjct: 121 RHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEIY 165

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  323 bits (830), Expect = e-114
 Identities = 147/218 (67%), Positives = 174/218 (79%), Gaps = 6/218 (2%)

Query: 3   AYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIV 62
           A+R D +YDYLFK+VLIGDSGVGKSN+LSRFTRNEF LESKSTIGVEFATR+++ + K V
Sbjct: 2   AHRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTV 61

Query: 63  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM 122
           KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+T+  TF+NV+RWL+ELRDH DSNIVIM
Sbjct: 62  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIM 121

Query: 123 LVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKA 182
           + GNK+DL HLR+V+ ED  A AE+E   F+ETSALE+ NVE AF  +L +IY ++S+KA
Sbjct: 122 MAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHIISKKA 181

Query: 183 LEIGDDPA--ALP-KGQTINVGTKDDVSAVKKVGCCSN 217
           L   +  A   LP +G TINV    D S   K GCCS 
Sbjct: 182 LAAQEAAANSGLPGQGTTINVA---DTSGNNKRGCCST 216

Length = 216

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  299 bits (767), Expect = e-105
 Identities = 103/163 (63%), Positives = 126/163 (77%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK++LIGDSGVGKS+LLSRFT  +FS + KSTIGV+F T++I  D K VK QIWDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           R+R+ITS+YYRGAVGALLVYD+T   +FEN+E WLKELR++   N+VIMLVGNK+DL   
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVGNKSDLEEQ 120

Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
           R VS E+A AFAE     F ETSA  + NVE AF E+  +I +
Sbjct: 121 RQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILK 163

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  260 bits (666), Expect = 1e-89
 Identities = 91/162 (56%), Positives = 115/162 (70%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+VL+GD GVGKS+LL RFT+N+F  E   TIGV+F T++I  D K VK QIWDTAGQER
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLR 134
           +RA+   YYRGA G LLVYD+T   +FENV++WL+E+  H D N+ I+LVGNK DL   R
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCDLEDQR 120

Query: 135 AVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
            VSTE+  A A+     FMETSA  + NVE AF E+  +I +
Sbjct: 121 VVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  249 bits (638), Expect = 2e-85
 Identities = 92/157 (58%), Positives = 117/157 (74%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK+VLIGDSGVGK++LL RF  N+FS   KSTIGV+F +++I  D K VK QIWDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           R+R+ITS+YYRGA GA+LVYDVT   +FEN+++WL EL+++   NI I+LVGNK+DL   
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSDLEDE 120

Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170
           R VSTE+A  FA+     F ETSA    NV+ AF  +
Sbjct: 121 RQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESL 157

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  219 bits (561), Expect = 1e-73
 Identities = 84/162 (51%), Positives = 111/162 (68%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK+VL+GDS VGKS+++ RF +NEFS   +STIG  F T+++  DD  VK +IWDTAGQE
Sbjct: 2   FKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE 61

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           RYR++   YYRGA  A++VYD+T   +FE  + W+KEL++H   NIVI L GNKADL   
Sbjct: 62  RYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGNKADLESK 121

Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
           R VSTE+A  +A+     FMETSA    NV   FTE+  ++ 
Sbjct: 122 RQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKLP 163

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  214 bits (548), Expect = 1e-71
 Identities = 91/167 (54%), Positives = 111/167 (66%)

Query: 10  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDT 69
           Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I  D K +K QIWDT
Sbjct: 1   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 60

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKAD 129
           AGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H++SN+ IML+GNK D
Sbjct: 61  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCD 120

Query: 130 LRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
           L   R VS E+  AFA      FMETSA  + NVE AF     +IY 
Sbjct: 121 LESRREVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYD 167

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  209 bits (533), Expect = 3e-69
 Identities = 83/164 (50%), Positives = 113/164 (68%)

Query: 11  DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTA 70
           DYLFK++LIGDSGVGKS LL RF+ + F+    STIG++F  R+I  D K +K QIWDTA
Sbjct: 1   DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTA 60

Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL 130
           GQER+R IT++YYRGA+G +LVYD+T   +FEN++ W++ + +H   ++  MLVGNK D+
Sbjct: 61  GQERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVGNKCDM 120

Query: 131 RHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              R VS E+  A A      F+ETSA  ++NVE AF  +   I
Sbjct: 121 EEKRVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAKDI 164

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  207 bits (528), Expect = 4e-68
 Identities = 96/208 (46%), Positives = 129/208 (62%), Gaps = 2/208 (0%)

Query: 10  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDT 69
           Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I  D+K +K QIWDT
Sbjct: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKAD 129
           AGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H ++N+ IML+GNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122

Query: 130 LRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDP 189
           L H RAVSTE+   FA+     FME SA  + NVE AF +   +IY+ +     ++ ++ 
Sbjct: 123 LAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKKIQDGVFDVSNES 182

Query: 190 AALPKG--QTINVGTKDDVSAVKKVGCC 215
             +  G           D ++ +  GCC
Sbjct: 183 YGIKVGYGAIPGASGGRDGTSSQGGGCC 210

Length = 210

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  205 bits (523), Expect = 8e-68
 Identities = 84/163 (51%), Positives = 110/163 (67%)

Query: 12  YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAG 71
           YLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R+I  D K VK QIWDTAG
Sbjct: 1   YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAG 60

Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR 131
           QER+R ITS+YYRGA G ++VYDVT   +F NV++WL+E+  +   N+  +LVGNK DL 
Sbjct: 61  QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 120

Query: 132 HLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
             + V   +A  FA+     F+ETSA  + NVE AF  +  +I
Sbjct: 121 DKKVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREI 163

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  199 bits (508), Expect = 1e-65
 Identities = 85/165 (51%), Positives = 113/165 (68%)

Query: 12  YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAG 71
           Y+FK ++IGD GVGKS LL +FT  +F  +   TIGVEF TR I  + + +K QIWDTAG
Sbjct: 1   YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAG 60

Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR 131
           QER+RA+T +YYRGA GAL+VYD+TR  T+ ++  WL + R+ T+ N VI L+GNKADL 
Sbjct: 61  QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 120

Query: 132 HLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
             R V+ E+A  FA+     F+E SA    NVE+AF E   +IY+
Sbjct: 121 AQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIYQ 165

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  196 bits (500), Expect = 2e-64
 Identities = 79/165 (47%), Positives = 110/165 (66%), Gaps = 1/165 (0%)

Query: 11  DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTA 70
           D+LFK++LIGDS VGK+ ++ RF    FS    +TIGV+F  +++    K VK QIWDTA
Sbjct: 1   DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTA 60

Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL 130
           GQER+R IT +YYR A GA++ YD+TR  +FE+V  W++E+  +  SN+V++L+GNK DL
Sbjct: 61  GQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDL 120

Query: 131 RHLRAVSTEDATAFAERENTFF-METSALESMNVENAFTEVLTQI 174
              R V  E+A   AE       +ETSA ES NVE AF  + T++
Sbjct: 121 EEQREVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMATEL 165

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  190 bits (485), Expect = 4e-62
 Identities = 83/162 (51%), Positives = 113/162 (69%), Gaps = 2/162 (1%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K++LIGDSGVGKS+LL RFT + F  +  STIGV+F  +++  D K VK  IWDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIMLVGNKADLRH 132
           R+R +TS+YYRGA G +LVYDVTR  TF+N++ WL EL  ++ + + V MLVGNK D + 
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKID-KE 119

Query: 133 LRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
            R V+ E+   FA + N  F+ETSA   + V+ AF E++ +I
Sbjct: 120 NREVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  183 bits (467), Expect = 2e-59
 Identities = 79/156 (50%), Positives = 103/156 (66%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK ++IG +G GKS LL +F  N+F  +S  TIGVEF +R +    K VK QIWDTAGQE
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           R+R++T +YYRGA GALLVYD+T   +F  +  WL + R     +IVI+LVGNK DL   
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPDIVIILVGNKKDLEDD 120

Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTE 169
           R V+  +A+ FA+     F+ETSAL   NVE AF +
Sbjct: 121 REVTFLEASRFAQENGLLFLETSALTGENVEEAFLK 156

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  182 bits (464), Expect = 2e-58
 Identities = 80/178 (44%), Positives = 111/178 (62%), Gaps = 2/178 (1%)

Query: 12  YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDD-KIVKAQIWDTA 70
           Y F++++IGDS VGKS+LL RFT   F+  S  T+GV+F +R I  +    +K Q+WDTA
Sbjct: 1   YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTA 60

Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKAD 129
           GQER+R+IT +YYR +VG LLV+D+T   +FE+V  WL+E R H      V +LVG+K D
Sbjct: 61  GQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCD 120

Query: 130 LRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGD 187
           L   R V+ E+A   A+     ++ETSA    NVE AF  +  +IY  + R  L   D
Sbjct: 121 LESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIKRGELCALD 178

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  178 bits (455), Expect = 1e-57
 Identities = 63/157 (40%), Positives = 108/157 (68%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K+V +GD  VGK+++++RF  + F  + ++TIG++F ++++  DDK V+ Q+WDTAGQE
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           R+R++  +Y R +  A++VYD+T   +F+N ++W+ ++RD   ++++I+LVGNK DL   
Sbjct: 61  RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDK 120

Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170
           R VSTE+    A+  N  F+ETSA    NV+  F ++
Sbjct: 121 RQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKI 157

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  175 bits (444), Expect = 2e-55
 Identities = 94/206 (45%), Positives = 124/206 (60%), Gaps = 8/206 (3%)

Query: 9   DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWD 68
           DYD+LFK+++IGDSGVGKS+LL RF  N FS    +TIGV+F  R++  + + VK QIWD
Sbjct: 2   DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWD 61

Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKA 128
           TAGQER+R ITS YYRG  G ++VYDVT   +F NV+RWL+E+  + D  +  +LVGNK 
Sbjct: 62  TAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDD-VCKVLVGNKN 120

Query: 129 DLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDD 188
           D    + V TEDA  FA +      ETSA E++NVE  F  +      V+  K     D+
Sbjct: 121 DDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITEL---VLRAKK----DN 173

Query: 189 PAALPKGQTINVGTKDDVSAVKKVGC 214
            A   + Q  +V      S  KK  C
Sbjct: 174 LAKQQQQQQNDVVKLPKNSKRKKRCC 199

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  168 bits (426), Expect = 3e-53
 Identities = 72/167 (43%), Positives = 114/167 (68%)

Query: 8   DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIW 67
           +DYD+LFK+VLIG++GVGK+ L+ RFT+  F     +TIGV+F  +++    + +K QIW
Sbjct: 2   EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIW 61

Query: 68  DTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNK 127
           DTAGQER+R+IT +YYR A   +L YD+T   +F  +  WL+E+  + ++ ++ +LVGNK
Sbjct: 62  DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNK 121

Query: 128 ADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
            DL   R VS + A  F++ ++ +++ETSA ES NVE  F ++  ++
Sbjct: 122 IDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  166 bits (422), Expect = 1e-52
 Identities = 64/161 (39%), Positives = 98/161 (60%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FKVVL+G+  VGK++L+ R+  N+F+ + +ST    F  +++    K +   IWDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           RY A+   YYR A GA+LVYD+T   +F+ V++W+KEL+    +NI +++VGNK DL   
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ 120

Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           R VS  +A  +A+       ETSA     +E  F  +  ++
Sbjct: 121 RVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  165 bits (419), Expect = 5e-52
 Identities = 71/176 (40%), Positives = 111/176 (63%), Gaps = 13/176 (7%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            KV+++GDSGVGK++L++++   +FS + K+TIG +F T+ +  DD++V  QIWDTAGQE
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD----SNIVIMLVGNKAD 129
           R++++  A+YRGA   +LVYDVT   +FE+++ W  E           N   +++GNK D
Sbjct: 61  RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKID 120

Query: 130 LRHLRAVSTEDATAFAE-RENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALE 184
           L   R VST+ A  + + + N  + ETSA E++NV+ AF          ++R ALE
Sbjct: 121 LEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFET--------IARLALE 168

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  161 bits (408), Expect = 3e-50
 Identities = 88/204 (43%), Positives = 119/204 (58%), Gaps = 15/204 (7%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKS-TIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
           FKV+L+GDSGVGK+ LL RF    F   S   T+G++F  + +  D   VK QIWDTAGQ
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH 132
           ER+R++T AYYR A   LL+YDVT   +F+N+  WL E+ ++  S++VIML+GNKAD+  
Sbjct: 61  ERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKADMSG 120

Query: 133 LRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDPAAL 192
            R V  ED    A+     FMETSA   +NVE AFT V  ++      +++E  D+P   
Sbjct: 121 ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKEL----KHRSVEQPDEPK-- 174

Query: 193 PKGQTINVGTKDDV-SAVKKVGCC 215
                     +D V    K  GCC
Sbjct: 175 -------FKIQDYVEKQKKSSGCC 191

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  153 bits (387), Expect = 7e-47
 Identities = 92/214 (42%), Positives = 121/214 (56%), Gaps = 20/214 (9%)

Query: 10  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKS-TIGVEFATRSIRCDDKIVKAQIWD 68
           YD  FK++LIGDSGVGKS+LL  F  +  S+E  + TIGV+F  + +    K +K  IWD
Sbjct: 11  YDLSFKILLIGDSGVGKSSLLVSFISS--SVEDLAPTIGVDFKIKQLTVGGKRLKLTIWD 68

Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFEN-VERWLKELRDH-TDSNIVIMLVGN 126
           TAGQER+R +TS+YYR A G +LVYDVTR  TF N  + W KE+  + T+ + V MLVGN
Sbjct: 69  TAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGN 128

Query: 127 KADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIG 186
           K D    R VS E+  A A+     F+E SA    NVE  F E+           AL+I 
Sbjct: 129 KVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEEL-----------ALKIM 177

Query: 187 DDPAALPKGQTIN----VGTKDDVSAVKKVGCCS 216
           + P+ L +G T      +  K +       GCCS
Sbjct: 178 EVPSLLEEGSTAVKRNILKQKPEHQPPPNGGCCS 211

Length = 211

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score =  149 bits (377), Expect = 8e-46
 Identities = 61/162 (37%), Positives = 84/162 (51%), Gaps = 4/162 (2%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
            K+V++GD  VGKS LL+R   N+ S  E K      + T  I  D K  K  + DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHV--TFENVERWLKELRDHTDSNIVIMLVGNKADL 130
           E Y AI   YYR    +L V+D+   V    E +E+  KE+  H +S + I+LVGNK DL
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDL 121

Query: 131 RHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLT 172
           R  + + T  A  FA+      +  SA    N+++AF  V  
Sbjct: 122 RDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVEA 162

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  148 bits (376), Expect = 1e-45
 Identities = 67/162 (41%), Positives = 107/162 (66%)

Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
           +FK+++IG+S VGK++ L R+  + F+    ST+G++F  +++  +DK +K QIWDTAGQ
Sbjct: 1   MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQ 60

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH 132
           ERYR IT+AYYRGA+G +L+YD+T   +F  V+ W  +++ ++  N  ++LVGNK D+  
Sbjct: 61  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMED 120

Query: 133 LRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
            R VS E     A++    F E SA E++NV+  F  ++  I
Sbjct: 121 ERVVSAERGRQLADQLGFEFFEASAKENINVKQVFERLVDII 162

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  148 bits (375), Expect = 6e-45
 Identities = 71/162 (43%), Positives = 101/162 (62%), Gaps = 9/162 (5%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDD-KIVKAQIWDTAGQ 72
           FKV++IGD GVGK++++ R+    FS   K+TIGV+FA + I  D   +V+ Q+WD AGQ
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRD--HTDSN--IVIMLVGNKA 128
           ER+  +T  YY+GAVGA++V+DVTR  TFE V +W  +L       +   I  +L+ NK 
Sbjct: 61  ERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLANKC 120

Query: 129 DLRHLR-AVSTEDATAFAERENTF--FMETSALESMNVENAF 167
           DL+  R A   E    F  +EN F  + ETSA E++N+E A 
Sbjct: 121 DLKKERLAKDPEQMDQFC-KENGFIGWFETSAKENINIEEAM 161

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  145 bits (368), Expect = 2e-44
 Identities = 68/157 (43%), Positives = 99/157 (63%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           F+++LIGDSGVGK+ LL RFT NEF     STIGV+F  ++I  D   V+ QIWDTAGQE
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           RY+ IT  YYR A G  LVYD++   +++++ +W+ ++ ++    +  +L+GNKAD    
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK 120

Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170
           R V  E     A+     F ETSA  + N++ +FT +
Sbjct: 121 RQVGDEQGNKLAKEYGMDFFETSACTNKNIKESFTRL 157

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  143 bits (362), Expect = 1e-43
 Identities = 60/161 (37%), Positives = 89/161 (55%), Gaps = 2/161 (1%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+V++G  GVGKS L  RF   EF  E   TI  +   + I  D +     I DTAGQE 
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIE-DSYRKQIVVDGETYTLDILDTAGQEE 59

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIMLVGNKADLRHL 133
           + A+   Y R   G +LVY +T   +FE ++   +++    D  ++ I+LVGNK DL + 
Sbjct: 60  FSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIVLVGNKCDLENE 119

Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           R VSTE+  A AE     F+ETSA  ++N++  F  ++ +I
Sbjct: 120 RQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  144 bits (364), Expect = 4e-43
 Identities = 68/190 (35%), Positives = 95/190 (50%), Gaps = 18/190 (9%)

Query: 10  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDT 69
           +   FK+V++GD GVGK+ LL+R   +EF      TIG     ++I    + +K Q+WDT
Sbjct: 2   FMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDT 61

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHV-TFENVERWLKELRDHTDSNIVIMLVGNKA 128
           AGQE YR++   YYRGA G L+VYD T    + E  E WL+ELR+    ++ I+LVGNK 
Sbjct: 62  AGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKI 121

Query: 129 DLRH------------LRAVSTEDATAFAERENTF---FMETSA--LESMNVENAFTEVL 171
           DL               R V        A          +ETSA  L   NV   F E+L
Sbjct: 122 DLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELL 181

Query: 172 TQIYRVVSRK 181
            ++   + + 
Sbjct: 182 RKLLEEIEKL 191

Length = 219

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  141 bits (357), Expect = 1e-42
 Identities = 68/168 (40%), Positives = 102/168 (60%), Gaps = 11/168 (6%)

Query: 10  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSI----------RCDD 59
           YDYL K++ +GDSGVGK+  L R+T N+F+ +  +T+G++F  + +              
Sbjct: 1   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKA 60

Query: 60  KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-N 118
             V  Q+WDTAGQER+R++T+A++R A+G LL++D+T   +F NV  W+ +L+ H    N
Sbjct: 61  FRVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCEN 120

Query: 119 IVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA 166
             I+L+GNKADL   R VS   A   A++    + ETSA    NVE A
Sbjct: 121 PDIVLIGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEKA 168

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  141 bits (356), Expect = 1e-42
 Identities = 68/171 (39%), Positives = 101/171 (59%), Gaps = 8/171 (4%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK+++IGDS VGK+ L  RF    F   +++TIGV+F  R++  D + +K Q+WDTAGQE
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62

Query: 74  RYR-AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVI-MLVGNKADLR 131
           R+R ++   YYR     + VYDVT   +F ++  W++E   H+  N V  +LVGNK DLR
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR 122

Query: 132 HLRAVSTEDATAFAERENTFFMETSA---LESMNVENAFTEVLTQIYRVVS 179
               V T+ A  FA+  +    ETSA    E+ +VE  F   +T  +++ S
Sbjct: 123 EQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF---MTLAHKLKS 170

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score =  136 bits (344), Expect = 1e-40
 Identities = 69/169 (40%), Positives = 102/169 (60%), Gaps = 15/169 (8%)

Query: 9   DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKST-------IGVEFATRSIRCDDKI 61
            YDYL K +L+GDS VGK  +L+       SL+  ST       +G+++ T +I  D + 
Sbjct: 2   AYDYLLKFLLVGDSDVGKGEILA-------SLQDGSTESPYGYNMGIDYKTTTILLDGRR 54

Query: 62  VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVI 121
           VK Q+WDT+GQ R+  I  +Y RGA G +LVYD+T   +F+ ++RW+KE+ +H    +  
Sbjct: 55  VKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA-PGVPK 113

Query: 122 MLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170
           +LVGN+  L   R V+TE A A+AER    F E S L + N+  +FTE+
Sbjct: 114 ILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTEL 162

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  135 bits (342), Expect = 3e-40
 Identities = 66/172 (38%), Positives = 109/172 (63%), Gaps = 4/172 (2%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           +V++IG  GVGK++L+ RFT + F    KST+GV+F  +++    K ++ QIWDTAGQER
Sbjct: 2   QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 61

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLR 134
           + +ITSAYYR A G +LVYD+T+  TF+++ +W+K +  +   +  ++LVGNK D    R
Sbjct: 62  FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR 121

Query: 135 AVSTEDATAFAER-ENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEI 185
            ++ +    FA++     F E SA ++ NV+  F +++  I   + +  L+I
Sbjct: 122 EITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI---LKKMPLDI 170

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  131 bits (330), Expect = 1e-38
 Identities = 66/167 (39%), Positives = 102/167 (61%), Gaps = 6/167 (3%)

Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
           L KV+L+GD GVGKS+L++R+  N+F  +   TIGVEF  + +  D   V  QIWDTAGQ
Sbjct: 5   LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ 64

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD----SNIVIMLVGNKA 128
           ER+R++ + +YRG+   LL + V    +F+N+  W KE   + D     +   +++GNK 
Sbjct: 65  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 124

Query: 129 DLRHLRAVSTEDATAF-AERENTFFMETSALESMNVENAFTEVLTQI 174
           D+   R VSTE+A A+  +  +  + ETSA ++ NV  AF E + ++
Sbjct: 125 DIPE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 170

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  127 bits (321), Expect = 3e-37
 Identities = 62/165 (37%), Positives = 93/165 (56%), Gaps = 4/165 (2%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           +K+V++G  GVGKS L  +F +  F  E   TI  +   + I  D ++    I DTAGQE
Sbjct: 3   YKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 61

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE--LRDHTDSNIVIMLVGNKADLR 131
            + A+   Y R   G LLVY +T   +FE + +  +E  LR     ++ I+LVGNK DL 
Sbjct: 62  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAK-FREQILRVKDRDDVPIVLVGNKCDLE 120

Query: 132 HLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
           + R VSTE+    A +    F+ETSA E +NV+ AF +++ +I +
Sbjct: 121 NERVVSTEEGKELARQWGCPFLETSAKERINVDEAFYDLVREIRK 165

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  127 bits (321), Expect = 3e-37
 Identities = 61/165 (36%), Positives = 93/165 (56%), Gaps = 4/165 (2%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           +K+V++G  GVGKS L  +F +  F  +   TI  +   + I  D ++    I DTAGQE
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 59

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE--LRDHTDSNIVIMLVGNKADLR 131
            + A+   Y R   G LLVY +T   +FE +++  +E  LR     ++ I+LVGNK DL 
Sbjct: 60  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKK-FREQILRVKDRDDVPIVLVGNKCDLE 118

Query: 132 HLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
             R VSTE+    A +    F+ETSA E +NV+ AF +++ +I +
Sbjct: 119 SERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREIRK 163

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  125 bits (315), Expect = 2e-36
 Identities = 61/155 (39%), Positives = 90/155 (58%), Gaps = 3/155 (1%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSI--RCDDKIVKAQIWDTAGQ 72
           KV+++G+  VGKS+++ RF +  F+ + K TIGV+F  + I  R  D+ V+  +WDTAGQ
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH 132
           E + AIT AYYRGA   +LV+  T   +FE +E W KE  +    +I ++LV  K DL  
Sbjct: 62  EEFDAITKAYYRGAQACILVFSTTDRESFEAIESW-KEKVEAECGDIPMVLVQTKIDLLD 120

Query: 133 LRAVSTEDATAFAERENTFFMETSALESMNVENAF 167
              ++ E+A A A+R       TS  +  NV   F
Sbjct: 121 QAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELF 155

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  120 bits (303), Expect = 1e-34
 Identities = 54/167 (32%), Positives = 89/167 (53%), Gaps = 5/167 (2%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           KV+ +G+SGVGKS ++ R+    F  +   TIG+++  + +   +K V+   +D +G   
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE 61

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-----NIVIMLVGNKAD 129
           Y  + + +Y+   G LLVYDVT   +FE ++ WLKE++          NIV+++  NK D
Sbjct: 62  YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKID 121

Query: 130 LRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
           L   RAVS ++   +AE +   + ETSA     V   F  + + I  
Sbjct: 122 LTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSIVD 168

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score =  114 bits (287), Expect = 2e-32
 Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 4/157 (2%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K++L+GDS VGKS L+ RF  + +  +  ST  +     + + + K +    WDTAGQER
Sbjct: 2   KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER 61

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLR 134
           ++ + ++YY  A   +LV+DVTR +T++N+ +W +ELR++    I  ++V NK D   L 
Sbjct: 62  FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPE-IPCIVVANKID---LD 117

Query: 135 AVSTEDATAFAERENTFFMETSALESMNVENAFTEVL 171
              T+    FAE+ N      SA +  NV   F + +
Sbjct: 118 PSVTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAI 154

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  114 bits (287), Expect = 5e-32
 Identities = 65/184 (35%), Positives = 99/184 (53%), Gaps = 11/184 (5%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATR-SIRCDDKIVKAQIWDTAGQE 73
           K+V++GD GVGK+ L  +   N F      TI  E + R  +  D +    ++ DTAGQE
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTI--EDSYRKQVVVDGQPCMLEVLDTAGQE 58

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR---DHTDSNIVIMLVGNKADL 130
            Y A+   + R   G +LVY +T   TFE VER+ ++++   D + +++ IM+VGNK D 
Sbjct: 59  EYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDK 118

Query: 131 RHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDPA 190
            + R VSTE+  A A R    F+E SA  ++NVE AF  ++  +     R+  + G  P 
Sbjct: 119 VYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRAL-----RQQRQGGQGPK 173

Query: 191 ALPK 194
             P 
Sbjct: 174 GGPT 177

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score =  113 bits (284), Expect = 2e-31
 Identities = 60/161 (37%), Positives = 92/161 (57%), Gaps = 6/161 (3%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           KVV++G   VGK++L+ R+  + F +   ++TIG  F  + +   +++V   IWDTAG E
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL--- 130
           RY A++  YYRGA  A++ YD+T   +FE  + W+KEL++  + +  I L G K+DL   
Sbjct: 62  RYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQN-LEEHCKIYLCGTKSDLIEQ 120

Query: 131 -RHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170
            R LR V   D   FA+       ETS+    NV+  F +V
Sbjct: 121 DRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKV 161

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score =  111 bits (279), Expect = 5e-31
 Identities = 51/139 (36%), Positives = 89/139 (64%)

Query: 36  NEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDV 95
           + F    +STIG++F ++++  D+  V+ Q+WDTAGQER+R++  +Y R +  A++VYD+
Sbjct: 3   DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDI 62

Query: 96  TRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMET 155
           T   +FEN  +W++++ +    +++I LVGNK DL  LR V+ E+    A+  NT F ET
Sbjct: 63  TNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHET 122

Query: 156 SALESMNVENAFTEVLTQI 174
           SA    N++  F ++  ++
Sbjct: 123 SAKAGHNIKVLFKKIAAKL 141

Length = 176

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  110 bits (276), Expect = 1e-30
 Identities = 59/162 (36%), Positives = 91/162 (56%), Gaps = 2/162 (1%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           +K+V++G  GVGKS L  +F ++ F  +   TI   + T+    D +  +  I DTAGQE
Sbjct: 3   YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWARLDILDTAGQE 61

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLRH 132
            + A+   Y R   G LLV+ VT   +FE V+++  + LR        ++LVGNKADL H
Sbjct: 62  EFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEH 121

Query: 133 LRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
            R VS E+    A +    ++ETSA + +NV+ AF +++  I
Sbjct: 122 QRQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDLVRVI 163

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score =  108 bits (272), Expect = 8e-30
 Identities = 59/164 (35%), Positives = 86/164 (52%), Gaps = 2/164 (1%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+ ++G   VGKS+L  +F    F      TI   F ++ I    +    +I DTAGQ+ 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIITYKGQEYHLEIVDTAGQDE 61

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVER-WLKELRDHTDSNIVIMLVGNKADLRHL 133
           Y  +   Y  G  G +LVY VT   +FE V+  + K L      ++ I+LVGNK+DL   
Sbjct: 62  YSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHME 121

Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRV 177
           R VS E+    AE     F+E+SA E+ NVE AF  ++ +I +V
Sbjct: 122 RQVSAEEGKKLAESWGAAFLESSAKENENVEEAFELLIEEIEKV 165

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score =  107 bits (270), Expect = 1e-29
 Identities = 58/161 (36%), Positives = 86/161 (53%), Gaps = 17/161 (10%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVE-----FATRS--IRCDDKIVKAQI 66
           FK+VL+GD G GK+  + R    EF  +  +T+GVE     F T    IR +       +
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFN-------V 53

Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGN 126
           WDTAGQE++  +   YY     A++++DVT  VT++NV  W ++L      NI I+L GN
Sbjct: 54  WDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGN 112

Query: 127 KADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAF 167
           K D++  R V  +  T F  ++N  + E SA  + N E  F
Sbjct: 113 KVDIKD-RKVKPKQIT-FHRKKNLQYYEISAKSNYNFEKPF 151

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  106 bits (268), Expect = 3e-29
 Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 15/168 (8%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+V++GD  VGK+ LL  +T N+F  E   T+  +  + ++  D K V   +WDTAGQE 
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV-FDNYSANVTVDGKQVNLGLWDTAGQEE 60

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVER-WLKELRDHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      LL + V    +FENV+  W  E++ +   N+ I+LVG K DLR  
Sbjct: 61  YDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYC-PNVPIILVGTKIDLRDD 119

Query: 132 ---------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTE 169
                      + ++ E+    A+      +ME SAL    ++  F E
Sbjct: 120 GNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVFDE 167

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  106 bits (266), Expect = 4e-29
 Identities = 61/167 (36%), Positives = 91/167 (54%), Gaps = 8/167 (4%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            KV+++G  GVGKS L  +F  +EF  + + T    +  + +  D + V+  I DTAGQE
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQLNILDTAGQE 59

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTF----ENVERWLKELRDHTDSNIVIMLVGNKAD 129
            Y AI   Y+R   G LLV+ +T   +F    E  E+ L   R   D N+ ++LVGNK D
Sbjct: 60  DYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQIL---RVKEDDNVPLLLVGNKCD 116

Query: 130 LRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
           L   R VS E+A   AE+    ++ETSA    NV+  F +++ +I +
Sbjct: 117 LEDKRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVREIRQ 163

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =  105 bits (264), Expect = 1e-28
 Identities = 55/168 (32%), Positives = 80/168 (47%), Gaps = 16/168 (9%)

Query: 16  VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY 75
           +V++GD  VGK+ LL  +T N F  +   T+   ++   +  D K V+  +WDTAGQE Y
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTVFENYSA-DVEVDGKPVELGLWDTAGQEDY 59

Query: 76  RAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR--- 131
             +    Y      L+ + V    +FENV E+W  E++ H   N+ I+LVG K DLR   
Sbjct: 60  DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVK-HFCPNVPIILVGTKLDLRNDK 118

Query: 132 ---------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTE 169
                        V+ E   A A+R     ++E SAL    V   F E
Sbjct: 119 STLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVFEE 166

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score =  105 bits (264), Expect = 1e-28
 Identities = 59/162 (36%), Positives = 88/162 (54%), Gaps = 2/162 (1%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           +K+V++G  GVGKS L  +F +N F  E   TI   +  +    D++     I DTAGQE
Sbjct: 6   YKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQE 64

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLRH 132
            Y A+   Y R   G L VY +T   +FE +  + ++ LR      + ++LVGNK DL  
Sbjct: 65  EYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS 124

Query: 133 LRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
            R VST +    A+     F+ETSA + +NV+ AF E++ +I
Sbjct: 125 ERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREI 166

Length = 189

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score =  103 bits (259), Expect = 4e-28
 Identities = 57/159 (35%), Positives = 90/159 (56%), Gaps = 3/159 (1%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           KV+++GD  VGK+ L++RF ++ F    K+TIGV+F              Q+WDTAGQER
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLRHL 133
           ++ I S YYRGA   ++V+D+T   + E+  +WL++ L+++  S++++ LVG K DL   
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSP 121

Query: 134 RAVS--TEDATAFAERENTFFMETSALESMNVENAFTEV 170
              +   +DA   A      +   SAL   NV + F  V
Sbjct: 122 AQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFFFRV 160

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score =  102 bits (257), Expect = 4e-27
 Identities = 55/159 (34%), Positives = 87/159 (54%), Gaps = 13/159 (8%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVE-----FATRSIRCDDKIVKAQIWD 68
           FK+V++GD G GK+  + R    EF  + + TIGVE     F T   +     ++   WD
Sbjct: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-----IRFYCWD 68

Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKA 128
           TAGQE++  +   YY     A++++DVT  +T++NV  W ++L    + NI I+L GNK 
Sbjct: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKV 127

Query: 129 DLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAF 167
           D+++ R V  +  T F  ++N  + E SA  + N E  F
Sbjct: 128 DVKN-RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPF 164

Length = 219

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score =  102 bits (256), Expect = 4e-27
 Identities = 59/179 (32%), Positives = 93/179 (51%), Gaps = 5/179 (2%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKI-VKAQIWDTAGQ 72
            K+V++GD   GK++L+ RF +  F    K TIG++F +R I     + V  Q+WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWL---KELRDHTDSNIVIMLVGNKAD 129
           +    +   Y  GA    LVYD+T   +FEN+E WL   K++ + +++   ++LVGNK D
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNKTD 120

Query: 130 LRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRV-VSRKALEIGD 187
           L H R V+ E    FA+  +   +  SA     V   F  +  ++  V +S+  LE   
Sbjct: 121 LEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAELLGVKLSQAELEQSQ 179

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score =  100 bits (252), Expect = 5e-27
 Identities = 56/162 (34%), Positives = 84/162 (51%), Gaps = 3/162 (1%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           +K+V++G  GVGKS L  +  +N F  E   TI   +  + +  D +     I DTAGQE
Sbjct: 2   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++  + ++++   DS+ V M LVGNK DL  
Sbjct: 61  EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA 120

Query: 133 LRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
            R VST      A+     ++ETSA     VE AF  ++ +I
Sbjct: 121 -RTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score =  102 bits (255), Expect = 6e-27
 Identities = 58/186 (31%), Positives = 95/186 (51%), Gaps = 6/186 (3%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK++L+GD GVGK+  + R    EF  +   T+GVE        +   +   +WDTAGQE
Sbjct: 10  FKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQE 69

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           ++  +   YY     A++++DVT  +T++NV  W +++    + NI I+LVGNK D++  
Sbjct: 70  KFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCE-NIPIVLVGNKVDVKD- 127

Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDPAALP 193
           R V     T F  ++N  + + SA  + N E  F  +     R+ +   L     PA  P
Sbjct: 128 RQVKARQIT-FHRKKNLQYYDISAKSNYNFEKPFLWLAR---RLTNDPNLVFVGAPALAP 183

Query: 194 KGQTIN 199
           +   I+
Sbjct: 184 EEIQID 189

Length = 215

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 99.1 bits (247), Expect = 2e-26
 Identities = 55/161 (34%), Positives = 80/161 (49%), Gaps = 4/161 (2%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           ++VV+ G  GVGKS+L+ RF +  F      TI   +  + I C   I   QI DT G  
Sbjct: 2   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKSICTLQITDTTGSH 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVE---RWLKELRDHTDSNIVIMLVGNKADL 130
           ++ A+           +LVY +T   + E ++     + E++ +    I IMLVGNK D 
Sbjct: 61  QFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCDE 120

Query: 131 RHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVL 171
              R VS+ +  A A   N  FMETSA  + NV+  F E+L
Sbjct: 121 SPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELFQELL 161

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 97.6 bits (243), Expect = 1e-25
 Identities = 59/167 (35%), Positives = 87/167 (52%), Gaps = 11/167 (6%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           +K+V++G  GVGKS L  +F +N F      TI   +  + +  D +    +I DTAG E
Sbjct: 2   YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQ-VEIDGRQCDLEILDTAGTE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHT-----DSNIVIMLVGNKA 128
           ++ A+   Y +   G LLVY VT     E     L ELR+         N+ ++LVGNKA
Sbjct: 61  QFTAMRELYIKSGQGFLLVYSVTS----EASLNELGELREQVLRIKDSDNVPMVLVGNKA 116

Query: 129 DLRHLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVLTQI 174
           DL   R VS ED  + +++     F ETSA +  NV+  F +++ QI
Sbjct: 117 DLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQI 163

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 97.8 bits (244), Expect = 2e-25
 Identities = 53/174 (30%), Positives = 81/174 (46%), Gaps = 17/174 (9%)

Query: 11  DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDD-KIVKAQIWDT 69
           D   K+V++GD G GK+ LL  + +  F  E   T+  E    +++  + KI++  +WDT
Sbjct: 1   DLKVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTV-FENYVTTLQVPNGKIIELALWDT 59

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKA 128
           AGQE Y  +    Y      L+ Y V    + +NV ++W  E+  H      I+LVG K 
Sbjct: 60  AGQEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVN-HFCPGTPIVLVGLKT 118

Query: 129 DLR-------HLRA-----VSTEDATAFAERENTF-FMETSALESMNVENAFTE 169
           DLR        LRA     V+ E   + A+      ++E SA    NV+  F  
Sbjct: 119 DLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDA 172

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 96.2 bits (240), Expect = 4e-25
 Identities = 59/167 (35%), Positives = 87/167 (52%), Gaps = 6/167 (3%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+ ++G SGVGKS L  RF    F  E +  +   + +R +  D + V  +I DT GQ++
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLY-SRQVTIDGEQVSLEIQDTPGQQQ 59

Query: 75  YRA--ITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDH--TDSNIVIMLVGNKADL 130
                      R A G +LVY +T   +F+ V + L+ +R+    D  I ++LVGNKADL
Sbjct: 60  NEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGNKADL 119

Query: 131 RHLRAVSTEDATAFAERENTFFMETSALESMN-VENAFTEVLTQIYR 176
            H R VSTE+    A      F E SA E+   V+N F E+  ++ R
Sbjct: 120 LHSRQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVFHELCREVRR 166

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 95.3 bits (237), Expect = 7e-25
 Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 4/165 (2%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           +K+V++G  GVGKS L  +F +  F  +   TI   +  + +  D +    +I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE--LRDHTDSNIVIMLVGNKADLR 131
           ++ A+   Y +   G +LVY +T   TF +++  L+E  LR     ++ ++LVGNK DL 
Sbjct: 61  QFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLE 119

Query: 132 HLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
             R V  E     A +    F+ETSA   +NV   F +++ QI R
Sbjct: 120 DERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQINR 164

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 94.5 bits (235), Expect = 1e-24
 Identities = 54/163 (33%), Positives = 85/163 (52%), Gaps = 4/163 (2%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           +KVV++G  GVGKS L  +F    F  +   TI  +F  + I  D      +I DTAG E
Sbjct: 2   YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE--LRDHTDSNIVIMLVGNKADLR 131
           ++ ++   Y +   G ++VY +    TF+++ + +++  +R      + I+LVGNK DL 
Sbjct: 61  QFASMRDLYIKNGQGFIVVYSLVNQQTFQDI-KPMRDQIVRVKGYEKVPIILVGNKVDLE 119

Query: 132 HLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
             R VS+ +  A AE     FMETSA     V   F E++ Q+
Sbjct: 120 SEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 94.1 bits (234), Expect = 2e-24
 Identities = 51/161 (31%), Positives = 76/161 (47%), Gaps = 5/161 (3%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRN--EFSLESKSTIGVEFATRSIRCDD--KIVKAQIWDTA 70
           +  ++GD  VGKS L+  F  +   F      T G +   +++   D    V+  I+D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKAD 129
           GQE +  +    +       +VYDVT  V+F N  RW+  +R H+   +   +LVGNK D
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTPGVLVGNKCD 121

Query: 130 LRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170
           L   R V    A A A+     F ETSA E +  E  F  +
Sbjct: 122 LTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSL 162

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 93.4 bits (232), Expect = 4e-24
 Identities = 58/167 (34%), Positives = 88/167 (52%), Gaps = 11/167 (6%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           +K+V++G  GVGKS L  +F +  F  +   TI  +   + I  D +    +I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIE-DSYRKQIEVDCQQCMLEILDTAGTE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHT----DSNIVIM-LVGNKA 128
           ++ A+   Y +   G  LVY +T   +F +    L++LR+      D+  V M LVGNK 
Sbjct: 61  QFTAMRDLYIKNGQGFALVYSITAQQSFND----LQDLREQILRVKDTEDVPMILVGNKC 116

Query: 129 DLRHLRAVSTEDATAFAER-ENTFFMETSALESMNVENAFTEVLTQI 174
           DL   R VS E+    A +  N  F+ETSA   +NV+  F +++ QI
Sbjct: 117 DLEDERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQI 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 92.9 bits (231), Expect = 7e-24
 Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 16/167 (9%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K VL+GD  VGK++L+  +T N +  E   T    F+   +  D K V+ Q+ DTAGQ+ 
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVV-VLVDGKPVRLQLCDTAGQDE 60

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
           +  +    Y      LL + V    +F+N+ E+W+ E+R H +    I+LVG +ADLR  
Sbjct: 61  FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKH-NPKAPIILVGTQADLRTD 119

Query: 132 ----------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAF 167
                       + VS   A A AE+     ++E SAL   N++  F
Sbjct: 120 VNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 90.8 bits (225), Expect = 1e-22
 Identities = 56/184 (30%), Positives = 92/184 (50%), Gaps = 11/184 (5%)

Query: 19  IGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAI 78
           +GD G GK+  + R    EF  +  +T+GVE        +   ++  +WDTAGQE++  +
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 79  TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVST 138
              YY     A++++DVT  VT++NV  W ++L      NI I+L GNK D++  R V  
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDVKD-RKVKA 118

Query: 139 EDATAFAERENTFFMETSALESMNVENAFTEVLTQI-----YRVVSRKAL---EIGDDPA 190
           +  T F  ++N  + + SA  + N E  F  +  ++        V+  AL   E+  DPA
Sbjct: 119 KSIT-FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPA 177

Query: 191 ALPK 194
              +
Sbjct: 178 LAAQ 181

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 89.9 bits (223), Expect = 1e-22
 Identities = 59/172 (34%), Positives = 88/172 (51%), Gaps = 4/172 (2%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           +K+V++G  GVGKS +  +F  + F      TI   + T+  R D++     I DTAGQ 
Sbjct: 3   YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQ-ARIDNEPALLDILDTAGQA 61

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKEL--RDHTDSNIVIMLVGNKADLR 131
            + A+   Y R   G ++ Y VT   +F+    + KEL  R     +I ++LVGNK DL 
Sbjct: 62  EFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEF-KELITRVRLTEDIPLVLVGNKVDLE 120

Query: 132 HLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKAL 183
             R V+TE+    A   N  F ETSA     +++AF  ++ +I R  S  AL
Sbjct: 121 QQRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREIRRKESMPAL 172

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 87.8 bits (218), Expect = 1e-21
 Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 6/166 (3%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+ L+GD+ +GK++L+ ++   EF  E   T+GV F  ++I      +   IWD  GQ  
Sbjct: 2   KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL---- 130
           +  +     + AV  L ++D+TR  T  +++ W ++ R    + I I LVG K DL    
Sbjct: 62  FINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPI-LVGTKYDLFADL 120

Query: 131 -RHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
               +   T+ A  +A+      +  S   S+NV+  F  VL +++
Sbjct: 121 PPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKFVLAKVF 166

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 87.1 bits (216), Expect = 1e-21
 Identities = 45/166 (27%), Positives = 65/166 (39%), Gaps = 15/166 (9%)

Query: 17  VLIGDSGVGKSNLLSRFTRNEFSLESK---STIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           V++G  GVGKS+LL+     E    S    +T   +        D   VK  + DT G +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDV--YVKELDKGKVKLVLVDTPGLD 58

Query: 74  RY-----RAITSAYYRGAVGALLVYDVTRHVTFENVER-WLKELRDHTDSNIVIMLVGNK 127
            +       +     RGA   LLV D T   + E+ +   L+ LR      I I+LVGNK
Sbjct: 59  EFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKE---GIPIILVGNK 115

Query: 128 ADLR-HLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLT 172
            DL               A+       E SA     V+  F +++ 
Sbjct: 116 IDLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 88.0 bits (218), Expect = 1e-21
 Identities = 61/197 (30%), Positives = 88/197 (44%), Gaps = 42/197 (21%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           KVVL+GD  VGK++LL R+    F  ++ ST+G  F  +            IWDTAG+E+
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRFK-DTVSTVGGAFYLKQWGP----YNISIWDTAGREQ 56

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL---- 130
           +  + S Y RGA   +L YDV+   + E +E     L D  + + +  +VGNK DL    
Sbjct: 57  FHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEG 116

Query: 131 ---------------RHLRAVSTEDATAFAERENTFFM--------------ETSALESM 161
                             R V+ EDA AF +R N + M              ETSA    
Sbjct: 117 ALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGY 176

Query: 162 NVENAFTEVLTQIYRVV 178
           NV     E+   ++ +V
Sbjct: 177 NV----DELFEYLFNLV 189

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 87.2 bits (216), Expect = 2e-21
 Identities = 58/165 (35%), Positives = 83/165 (50%), Gaps = 12/165 (7%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           KVV++GD   GK++LL+ FTR  F    + T+  E     I  D   V+  +WDTAGQE 
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTV-FENYIHDIFVDGLAVELSLWDTAGQEE 60

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR-- 131
           +  + S  Y      +L + V    + ENVE +WL E+R H    + ++LV  K DLR  
Sbjct: 61  FDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHCPG-VKLVLVALKCDLREP 119

Query: 132 ------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTE 169
                     +S E+  A A+R N   ++E SA  +  V  AFTE
Sbjct: 120 RNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTE 164

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 82.1 bits (203), Expect = 3e-20
 Identities = 43/116 (37%), Positives = 56/116 (48%), Gaps = 4/116 (3%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           KVV+IGD G GKS+LLS+    EF  E     G   A  ++  D       IWD  G+E 
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVER---WLKELRDHTDSNIVIMLVGNK 127
            +     + + A   LLVYD+T   +   V R   WL  LR      I ++LVGNK
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRK-LGGKIPVILVGNK 115

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 80.9 bits (200), Expect = 7e-19
 Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 1/162 (0%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           ++VVL+GDSGVGKS+L + FT   +   +    G +   R++  D +     ++D   QE
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRD-HTDSNIVIMLVGNKADLRH 132
               +  +  +     ++VY VT   +FE       +LR      +I I+LVGNK+DL  
Sbjct: 61  DGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQAEDIPIILVGNKSDLVR 120

Query: 133 LRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
            R VS ++  A A   +  F+ETSA    NV+  F  ++ Q+
Sbjct: 121 SREVSVQEGRACAVVFDCKFIETSAALQHNVDELFEGIVRQV 162

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 79.1 bits (195), Expect = 2e-18
 Identities = 51/161 (31%), Positives = 79/161 (49%), Gaps = 3/161 (1%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           ++V +G +GVGK+ L+ RF  + F  + + T+  E  ++        V   I DT+G   
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVE-ELHSKEYEVAGVKVTIDILDTSGSYS 59

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLRHL 133
           + A+     +      LVY V    +FE V+R  +E L    D  + I++VGNK D    
Sbjct: 60  FPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNKIDSLAE 119

Query: 134 RAVSTEDATAFAERE-NTFFMETSALESMNVENAFTEVLTQ 173
           R V   DA +  E + N  F+E SA ++ NV   F E+L Q
Sbjct: 120 RQVEAADALSTVELDWNNGFVEASAKDNENVTEVFKELLQQ 160

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 78.0 bits (192), Expect = 6e-18
 Identities = 56/171 (32%), Positives = 83/171 (48%), Gaps = 15/171 (8%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+V++GD   GK++LL  FT  EF  E   T+   + T   R D K V+  +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVT-DCRVDGKPVQLALWDTAGQEE 61

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y  A   L+ + +    + ENV  +W++E+R +   N+ ++LVG K DLR  
Sbjct: 62  YERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQE 120

Query: 132 --------HLRAVSTEDATAFAERENT-FFMETSALESMNVENAFTEVLTQ 173
                       V  + A   A       +ME SAL    V++ F E  T+
Sbjct: 121 AVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVF-EAATR 170

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 76.3 bits (188), Expect = 1e-17
 Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 16/167 (9%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL  F++++F      T+  E     I  D K V+  +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 61

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRH- 132
           Y  +    Y      L+ + +    + EN+ E+W  E++ H   N+ I+LVGNK DLR+ 
Sbjct: 62  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 120

Query: 133 -----------LRAVSTEDATAFAERENTF-FMETSALESMNVENAF 167
                         V  E+  A AE+   F ++E SA     V   F
Sbjct: 121 EHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVF 167

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 75.6 bits (186), Expect = 3e-17
 Identities = 53/171 (30%), Positives = 79/171 (46%), Gaps = 16/171 (9%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N F  E   T+   ++  ++  D K V   +WDTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 61

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRH- 132
           Y  +    Y      L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR  
Sbjct: 62  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 120

Query: 133 -----------LRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVL 171
                      L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 121 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 171

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 74.9 bits (184), Expect = 5e-17
 Identities = 45/118 (38%), Positives = 65/118 (55%), Gaps = 3/118 (2%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K V +GD  VGK+ +L  +T N F  +   T+   F+  ++  D   V   +WDTAGQE 
Sbjct: 3   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGNTVNLGLWDTAGQED 61

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR 131
           Y  +    YRGA   LL + +    ++ENV ++W+ ELR H    + I+LVG K DLR
Sbjct: 62  YNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELR-HYAPGVPIVLVGTKLDLR 118

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 73.1 bits (179), Expect = 4e-16
 Identities = 50/181 (27%), Positives = 85/181 (46%), Gaps = 16/181 (8%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N F  E   T+   ++ ++   D + V   +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTA-VDGRTVSLNLWDTAGQEE 63

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRH- 132
           Y  + +  Y      ++ + +    ++ENV  +W  E+  H   N+ I+LVG K DLR+ 
Sbjct: 64  YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRND 122

Query: 133 -----------LRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVLTQIYRVVSR 180
                         ++ +   A A++ +   ++E SAL    V+  F E +  +      
Sbjct: 123 ADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLNPTPI 182

Query: 181 K 181
           K
Sbjct: 183 K 183

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 70.1 bits (172), Expect = 3e-15
 Identities = 36/158 (22%), Positives = 62/158 (39%), Gaps = 14/158 (8%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDD-KIVKAQIWDTAGQE 73
           K++L+G  GVGK++L  +    +F  +  ST G+      I   + K ++  +WD  GQE
Sbjct: 3   KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQE 62

Query: 74  RYRA-----ITS-AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNK 127
            Y A     +TS + Y      LLV+D+        V  WL++++        ++LVG  
Sbjct: 63  IYHATHQFFLTSRSLY------LLVFDLRTGDEVSRVPYWLRQIKAFG-GVSPVILVGTH 115

Query: 128 ADLRHLRAVSTEDATAFAERENTFFMETSALESMNVEN 165
            D      +  +                S      +  
Sbjct: 116 IDESCDEDILKKALNKKFPAIINDIHFVSCKNGKGIAE 153

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 70.2 bits (172), Expect = 3e-15
 Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 3/118 (2%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+VL+GDS  GK+ LL  F ++ F      T+  E  T S   D + ++  +WDT+G   
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTV-FENYTASFEVDKQRIELSLWDTSGSPY 61

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR 131
           Y  +    Y  +   L+ +D++R  T ++V ++W  E+R+    N  ++LVG K+DLR
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFC-PNTPVLLVGCKSDLR 118

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 68.7 bits (168), Expect = 1e-14
 Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 16/171 (9%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++    +     ++DTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 61

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR  
Sbjct: 62  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 120

Query: 132 ----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
                       + ++ E     A + +   ++E SAL    ++N F E +
Sbjct: 121 PSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAI 171

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 66.6 bits (163), Expect = 7e-14
 Identities = 54/169 (31%), Positives = 71/169 (42%), Gaps = 30/169 (17%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKS-----TIGVEFATRSIRCDDKIVKAQIWDT 69
           ++VLIGD GVGKS+L+      EF           TI  +      R    IV     DT
Sbjct: 4   RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPE--RVPTTIV-----DT 56

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKA 128
           + + + RA  +A  R A    LVY V R  T E +  +WL  +R      + I+LVGNK+
Sbjct: 57  SSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKS 115

Query: 129 DLRHLRAVSTEDATAFAERENTFFM----------ETSALESMNVENAF 167
           DLR         + A  E E    M          E SA   +NV   F
Sbjct: 116 DLR------DGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVF 158

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 65.1 bits (158), Expect = 3e-13
 Identities = 40/136 (29%), Positives = 69/136 (50%), Gaps = 10/136 (7%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+V++GDS  GK+ LL  F ++ F      T+  E  T S   D + ++  +WDT+G   
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 65

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           Y  +    Y  +   L+ +D++R  T ++V ++W  E+++    N  ++LVG K+DLR  
Sbjct: 66  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLR-- 122

Query: 134 RAVSTEDATAFAEREN 149
                 D +   E  N
Sbjct: 123 -----TDVSTLVELSN 133

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 61.6 bits (149), Expect = 6e-12
 Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 16/176 (9%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +  + F  E   T+   +A  S+    K     ++DTAGQE
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV-SVTVGGKQYLLGLYDTAGQE 59

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR- 131
            Y  +    Y      L+ + V    +F+NV E W+ EL+++   N+  +L+G + DLR 
Sbjct: 60  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPYLLIGTQIDLRD 118

Query: 132 ---------HL--RAVSTEDATAFAERENT-FFMETSALESMNVENAFTEVLTQIY 175
                     +  + ++ E     A+      ++E SAL    ++  F E +  I 
Sbjct: 119 DPKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 174

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 62.1 bits (151), Expect = 1e-11
 Identities = 44/167 (26%), Positives = 81/167 (48%), Gaps = 17/167 (10%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATR--SIRCDDKIVKAQIWDTAG 71
           +++V++G S VGK+ ++SRF    F  +   TI  +F  +  SIR +  + +  I DT+G
Sbjct: 1   YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGE--VYQLDILDTSG 57

Query: 72  QERYRAITS-AYYRGAVGALLVYDVTRHVTFENVERWLKELRD---------HTDSNIVI 121
              + A+   +   G V  +LV+ +    +FE V R  +++ +           +  I +
Sbjct: 58  NHPFPAMRRLSILTGDV-FILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPM 116

Query: 122 MLVGNKADLRHLRAVSTEDATAF-AERENTFFMETSALESMNVENAF 167
           ++ GNKAD    R V  ++        EN  + E SA ++ N++  F
Sbjct: 117 VICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMF 163

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 57.2 bits (139), Expect = 2e-10
 Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 16/130 (12%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIG-----VEFATRSIRCDDKIVKAQIWDT 69
           +++++G  G GK+ +L +    E    +  TIG     VE+               +WD 
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEVV-TTIPTIGFNVETVEYKNVKF---------TVWDV 50

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKA 128
            GQ++ R +   YY    G + V D +     E  +  L +L +  +     ++++ NK 
Sbjct: 51  GGQDKIRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILANKQ 110

Query: 129 DLRHLRAVST 138
           DL      S 
Sbjct: 111 DLPGALTESE 120

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 57.8 bits (139), Expect = 3e-10
 Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 3/118 (2%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+VL+GD   GK+ +L    ++ +      T+  E  T  +  +++ V+  +WDT+G   
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 73

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFEN-VERWLKELRDHTDSNIVIMLVGNKADLR 131
           Y  +    Y  +   LL +D++R   F++ +++W  E+ D+   +  I+L+G K DLR
Sbjct: 74  YDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYC-PSTRILLIGCKTDLR 130

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 55.6 bits (134), Expect = 9e-10
 Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 13/131 (9%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRC---DDKIVKAQIWDTA 70
             +V++G    GK+ +L R   NEF + +  T G  F T  I+    + K V    WD  
Sbjct: 4   LHIVMLGLDSAGKTTVLYRLKFNEF-VNTVPTKG--FNTEKIKVSLGNAKGVTFHFWDVG 60

Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHT----DSNIVIMLVGN 126
           GQE+ R +  +Y R   G + V D    V  E +E    EL   T    +  + ++++ N
Sbjct: 61  GQEKLRPLWKSYTRCTDGIVFVVD---SVDVERMEEAKTELHKITKFSENQGVPVLVLAN 117

Query: 127 KADLRHLRAVS 137
           K DL +   VS
Sbjct: 118 KQDLPNALPVS 128

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 53.8 bits (129), Expect = 5e-09
 Identities = 43/201 (21%), Positives = 78/201 (38%), Gaps = 36/201 (17%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRC-----DDKIVKAQIWDT 69
           KV+++GDSGVGKS+L+    +N+       T+G     R         ++K    ++WD 
Sbjct: 2   KVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTPEEKTFYVELWDV 61

Query: 70  AGQ----ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDH----------- 114
            G     E  ++  + +Y    G + V+D+T   + +N+ RW  E  +            
Sbjct: 62  GGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLEALNRDTFPAGLLVTN 121

Query: 115 --------TDSNIVIMLVGNKADLRHLRAVS-TEDATAF-AEREN----TFFMETSALES 160
                     + + ++++G K D       +     TAF +E  N            L +
Sbjct: 122 GDYDSEQFAGNPVPLLVIGTKLDQIPEAKRNWVLTRTAFLSEDFNAEEINLDCTNGRLLA 181

Query: 161 MNVENAFTEVLTQIYRVVSRK 181
               NA    L++ +  V  K
Sbjct: 182 AGSSNA--VKLSRFFDKVIEK 200

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 53.5 bits (128), Expect = 7e-09
 Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 3/118 (2%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+V++GD+  GK+ LL  F ++ +  ES      E  T S   D   ++  +WDT+G   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYP-ESYVPTVFENYTASFEIDKHRIELNMWDTSGSSY 61

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR 131
           Y  +    Y  +   L+ +D++R  T ++V ++W  E ++    N  ++LVG K D+R
Sbjct: 62  YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC-PNAKLVLVGCKLDMR 118

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 52.9 bits (127), Expect = 2e-08
 Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 17/112 (15%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIG-------VEFAT-----RSIRCD---D 59
           +V+++GDSGVGKS+L+    +         TIG       + + +      SI+ D   D
Sbjct: 23  RVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERD 82

Query: 60  KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKEL 111
             V  ++WD +G ERY+   S +Y    G + V+D+++  T  ++++W  E+
Sbjct: 83  FFV--ELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEV 132

Length = 334

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 51.4 bits (123), Expect = 3e-08
 Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 26/177 (14%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWD----- 68
            +V ++G  GVGK+ ++ +F   EF  E   T        ++    ++    I D     
Sbjct: 1   VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60

Query: 69  ----TAGQE----RYRAI--TSAYYRGAVGALLVYDVTRHVTFENVE---RWLKELRDHT 115
               TAGQE    R+R +  + A+       +LVYD+    +F  V+   + + E R   
Sbjct: 61  RYPGTAGQEWMDPRFRGLRNSRAF-------ILVYDICSPDSFHYVKLLRQQILETRPAG 113

Query: 116 DSNIVIMLVGNKADLRHLRAVSTEDATAFAERE-NTFFMETSALESMNVENAFTEVL 171
           +    I++VGNK D +  R       +    +     ++E SA  + ++   F E+L
Sbjct: 114 NKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELL 170

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 49.6 bits (119), Expect = 9e-08
 Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 5/116 (4%)

Query: 16  VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY 75
           + L+G    GK+ L++     +FS ++  T+G  F  R +   +  +K  +WD  GQ R+
Sbjct: 2   ITLVGLQNSGKTTLVNVIASGQFSEDTIPTVG--FNMRKVTKGNVTIK--VWDLGGQPRF 57

Query: 76  RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLV-GNKADL 130
           R++   Y RG    + V D       E  +  L +L +      + +LV GNK DL
Sbjct: 58  RSMWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGNKNDL 113

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 12/122 (9%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGV---EFATRSIRCDDKIVKAQIWDTA 70
           +KV+++G    GK+ +L +F   E  + +  TIG    E   ++IR         +WD  
Sbjct: 16  YKVIIVGLDNAGKTTILYQFLLGE-VVHTSPTIGSNVEEIVYKNIR-------FLMWDIG 67

Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKAD 129
           GQE  R+  + YY      +LV D T        +  L ++  H D    V++++ NK D
Sbjct: 68  GQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQD 127

Query: 130 LR 131
           L+
Sbjct: 128 LK 129

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|206684 cd01897, NOG, Nucleolar GTP-binding protein (NOG)

 Score = 49.1 bits (118), Expect = 2e-07
 Identities = 44/177 (24%), Positives = 76/177 (42%), Gaps = 37/177 (20%)

Query: 16  VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVE-----FATRSI---RCDDKIVKAQIW 67
           +V+ G   VGKS+L+++ TR +           E     F T+S+     D K ++ Q+ 
Sbjct: 3   LVIAGYPNVGKSSLVNKLTRAK----------PEVAPYPFTTKSLFVGHFDYKYLRWQVI 52

Query: 68  DTAG------QER----YRAITS-AYYRGAVGALLVYDVTRH--VTFENVERWLKELRDH 114
           DT G      +ER     +AIT+ A+ R AV  L   D +     + E      KE++  
Sbjct: 53  DTPGILDRPLEERNTIEMQAITALAHLRAAV--LFFIDPSETCGYSIEEQLSLFKEIKPL 110

Query: 115 TDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVL 171
            +  ++++L  NK DL     +S  +     E+E    ++ S L    V+    +  
Sbjct: 111 FNKPVIVVL--NKIDLLTEEDLS--EIEKELEKEGEEVIKISTLTEEGVDELKNKAC 163

NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. Length = 167

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 37/163 (22%), Positives = 71/163 (43%), Gaps = 13/163 (7%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           +V+L+G    GKS LL +    E  + +  T+G       +   +K +   +WD  GQE+
Sbjct: 1   QVLLLGLDSAGKSTLLYKLKHAEL-VTTIPTVGFNVEMLQL---EKHLSLTVWDVGGQEK 56

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLRHL 133
            R +   Y     G + V D +     +  ++ LK  L++     + ++L+ NK DL   
Sbjct: 57  MRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPG- 115

Query: 134 RAVSTEDAT------AFAERENTFFMETSALESMNVENAFTEV 170
            A++ E+ T       +    + +    SA+    +  AF ++
Sbjct: 116 -ALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKL 157

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 47.0 bits (112), Expect = 8e-07
 Identities = 39/165 (23%), Positives = 67/165 (40%), Gaps = 19/165 (11%)

Query: 16  VVLIGDSGVGKSNLLSRFTRNEFSLESKS--------TIGVEFATRSIRCDDKIVKAQIW 67
           V+++G    GK+  L + T+ +FS   K         T+G+   T  I      +    W
Sbjct: 2   VLILGLDNAGKTTFLEQ-TKTKFSKNYKGLNPSKITPTVGLNIGT--IEVGKARLM--FW 56

Query: 68  DTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGN 126
           D  GQE  R++   YY  + G + V D T    F   +   ++ + +     + ++++ N
Sbjct: 57  DLGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLAN 116

Query: 127 KADLR---HLRAVST--EDATAFAERENTFFMETSALESMNVENA 166
           K DL     +  +    +D  A   R +      SALE   VE  
Sbjct: 117 KQDLPDALSVAEIKEVFDDCIALIGRRDCLVQPVSALEGEGVEEG 161

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 20/130 (15%)

Query: 15  KVVLIGDSGVGKSNLL------------SRFTRNEFSLESKSTIGVEFATRSIRCDDKIV 62
           K+V+IG  G GK+  +            +  +      +  +T+ ++F   SI  D+   
Sbjct: 12  KIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFG--SIELDED-T 68

Query: 63  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM 122
              ++ T GQER++ +     RGAVGA+++ D +R +TF   E  + +       N + +
Sbjct: 69  GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEE--IIDFLTSR--NPIPV 124

Query: 123 LVG-NKADLR 131
           +V  NK DL 
Sbjct: 125 VVAINKQDLF 134

Length = 187

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 46.4 bits (111), Expect = 1e-06
 Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 6/119 (5%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            +++++G    GK+ +L +    E    +  TIG    T +     K VK  +WD  GQE
Sbjct: 15  MRILILGLDNAGKTTILYKLKLGEIV-TTIPTIGFNVETVTY----KNVKFTVWDVGGQE 69

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLR 131
             R +   Y+      + V D       E  +  L   L +   ++  ++++ NK DL 
Sbjct: 70  SLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLP 128

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 46.5 bits (110), Expect = 2e-06
 Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 6/117 (5%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           +++++G    GK+ +L +    E S+ +  TIG    T +     K +   +WD  GQ++
Sbjct: 15  RILMVGLDAAGKTTILYKLKLGE-SVTTIPTIGFNVETVTY----KNISFTVWDVGGQDK 69

Query: 75  YRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRDHTDSNIVIMLVGNKADL 130
            R +   YY    G + V D   R    E  E   + L +    + VI++  NK DL
Sbjct: 70  IRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDL 126

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 45.7 bits (108), Expect = 3e-06
 Identities = 46/191 (24%), Positives = 72/191 (37%), Gaps = 38/191 (19%)

Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKST--------------IGVEFATRSIRCD 58
             K V++GD+ VGK+ L+     N+   + +                +  E   RS    
Sbjct: 2   TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVV 61

Query: 59  DKI-VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVER-WLKELRDHTD 116
           D + V  ++WDT G +  +    AY R  V  LL + +    +  NV+  W  E+R    
Sbjct: 62  DGVSVSLRLWDTFG-DHDKDRRFAYGRSDV-VLLCFSIASPNSLRNVKTMWYPEIRHFCP 119

Query: 117 SNIVIMLVGNKADLRHL-------------------RAVSTEDATAFAERENTFFMETSA 157
              VI LVG K DLR+                      +  E   A A+     + ETS 
Sbjct: 120 RVPVI-LVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSV 178

Query: 158 LESMNVENAFT 168
           +    V++ F 
Sbjct: 179 VTQFGVKDVFD 189

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 44.6 bits (105), Expect = 6e-06
 Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 18/134 (13%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           +VV +G  G GK+ +L +  ++EF ++   TIG    T     + K +K  IWD  G+ +
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEF-MQPIPTIGFNVET----VEYKNLKFTIWDVGGKHK 55

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWL------KELRDHTDSNIVIMLVGNKA 128
            R +   YY      + V D +           L      KELRD      ++++  NK 
Sbjct: 56  LRPLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRD-----ALLLIFANKQ 110

Query: 129 DLRHLRAVSTEDAT 142
           D+    A+S E+ T
Sbjct: 111 DVAG--ALSVEEMT 122

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 20/124 (16%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIG--VEFATRSIRCDDKIVKAQIWDTAGQ 72
           +++++G    GK+ +L +    + S+ +  T+G  VE  T       K VK  +WD  GQ
Sbjct: 11  RILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY------KNVKFNVWDVGGQ 63

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWL------KELRDHTDSNIVIMLVGN 126
           ++ R +   YY G  G + V D       +   + L      +E+RD      ++++  N
Sbjct: 64  DKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRD-----ALLLVFAN 118

Query: 127 KADL 130
           K DL
Sbjct: 119 KQDL 122

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 18/124 (14%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSI--RCDDKIVKAQIWDTAG- 71
           +V L+G   VGKS L++  T  + ++ S         TR           +  + DT G 
Sbjct: 1   RVALVGRPNVGKSTLINALTGAKVAIVSD----YPGTTRDPILGVLGLGRQIILVDTPGL 56

Query: 72  -----QERYRAITSAY---YRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIML 123
                + +     + +    R A   LLV D +  +T E+ E  L+EL       I+++L
Sbjct: 57  IEGASEGKGVEGFNRFLEAIREADLILLVVDASEGLT-EDDEEILEELEKLPKKPIILVL 115

Query: 124 VGNK 127
             NK
Sbjct: 116 --NK 117

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 16/141 (11%)

Query: 16  VVLIGDSGVGKSNLLSRF-TRNEFSLESKSTIG--VE-FATRSIRCDDKIVKAQIWDTAG 71
           ++++G    GK+ ++++    N  S     T+G  VE F   +       +    +D +G
Sbjct: 2   ILVLGLDNSGKTTIINQLKPSNAQSQNIVPTVGFNVESFKKGN-------LSFTAFDMSG 54

Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD---SNIVIMLVGNKA 128
           Q +YR +   YY+   G + V D +  +     +  L+ L +H D     I I+   NK 
Sbjct: 55  QGKYRGLWEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPDIKHRRIPILFYANKM 114

Query: 129 DLRHLRAVSTEDATAFAEREN 149
           DL    A++    T     EN
Sbjct: 115 DLPD--ALTAVKITQLLCLEN 133

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only]

 Score = 38.3 bits (90), Expect = 0.002
 Identities = 44/177 (24%), Positives = 71/177 (40%), Gaps = 34/177 (19%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLES--KSTIGVEFATR-SIRCDDKI--VKAQIWD 68
            KVV+IG   VGKS+LL+     + ++ +    T      TR  I  D  +  +  ++ D
Sbjct: 218 LKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGT------TRDVIEEDINLNGIPVRLVD 271

Query: 69  TAGQ-------ERY---RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSN 118
           TAG        ER    RA  +     A   L V D ++ +  E+       L +     
Sbjct: 272 TAGIRETDDVVERIGIERAKKAI--EEADLVLFVLDASQPLDKED-----LALIELLPKK 324

Query: 119 IVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
             I++V NKADL     VS  +  +         +  SA     ++ A  E + Q++
Sbjct: 325 KPIIVVLNKADL-----VSKIELESEKLANGDAIISISAKTGEGLD-ALREAIKQLF 375

Length = 454

>gnl|CDD|218745 pfam05783, DLIC, Dynein light intermediate chain (DLIC)

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 24/110 (21%), Positives = 53/110 (48%), Gaps = 12/110 (10%)

Query: 16  VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK--IVKAQIWDTAGQE 73
           V+++G+ G GK+ L+++    E     K   G+E+   ++  +D+    +  +W   G  
Sbjct: 48  VLVLGEDGSGKTTLIAKLQGVE---HPKKGRGLEYLYLNVHDEDRDDQTRCNVWILDGDL 104

Query: 74  RYR-----AITSAYYRGAVGALLVYDVTRHVT-FENVERWLKELRDHTDS 117
            ++     A+ +      +  + V D++R  T  E++++W   LR+H D 
Sbjct: 105 YHKGLLKFALNAESLADTL-VIFVVDMSRPWTIMESLQKWASVLREHIDK 153

This family consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo. Length = 490

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	217
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
PLN03108	210	Rab family protein; Provisional	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
PLN03118	211	Rab family protein; Provisional	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	100.0
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	100.0
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	100.0
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	100.0
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	100.0
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.98
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.98
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.98
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.98
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.98
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.98
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.98
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.97
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.97
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.97
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.97
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.97
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.97
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.97
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.97
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.97
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.97
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.97
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.97
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.97
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.97
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.97
PLN00223	181	ADP-ribosylation factor; Provisional	99.97
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.96
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.96
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.96
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.96
KOG0395	196	consensus Ras-related GTPase [General function pre	99.96
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.96
PTZ00133	182	ADP-ribosylation factor; Provisional	99.96
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.96
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.96
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.96
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.96
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.95
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.95
PTZ00099	176	rab6; Provisional	99.95
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.95
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.95
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.95
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.95
PLN00023	334	GTP-binding protein; Provisional	99.95
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.95
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.95
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.94
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.94
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.94
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.94
PRK12299	335	obgE GTPase CgtA; Reviewed	99.94
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.93
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.93
COG1100	219	GTPase SAR1 and related small G proteins [General	99.93
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.93
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.93
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.93
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.93
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.93
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.92
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.92
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.92
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.92
PRK04213	201	GTP-binding protein; Provisional	99.91
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.91
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.91
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.91
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.91
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.91
PRK03003	472	GTP-binding protein Der; Reviewed	99.9
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.9
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.9
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.9
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.89
PRK15494	339	era GTPase Era; Provisional	99.89
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.89
cd00881	189	GTP_translation_factor GTP translation factor fami	99.89
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.89
PRK12297	424	obgE GTPase CgtA; Reviewed	99.89
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.89
PRK03003	472	GTP-binding protein Der; Reviewed	99.89
PRK11058	426	GTPase HflX; Provisional	99.89
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.89
KOG1673	205	consensus Ras GTPases [General function prediction	99.89
PRK12296	500	obgE GTPase CgtA; Reviewed	99.88
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.88
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.88
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.88
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.88
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.88
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.88
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.88
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.87
COG1159	298	Era GTPase [General function prediction only]	99.87
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.87
PRK12298	390	obgE GTPase CgtA; Reviewed	99.87
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.87
PRK00089	292	era GTPase Era; Reviewed	99.87
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.87
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.87
CHL00189	742	infB translation initiation factor 2; Provisional	99.86
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.86
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.86
COG1160	444	Predicted GTPases [General function prediction onl	99.85
PRK00093	435	GTP-binding protein Der; Reviewed	99.85
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.85
PRK05433	600	GTP-binding protein LepA; Provisional	99.85
PRK00093	435	GTP-binding protein Der; Reviewed	99.85
PRK05306	787	infB translation initiation factor IF-2; Validated	99.85
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.85
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.85
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.85
COG1160	444	Predicted GTPases [General function prediction onl	99.85
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.84
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.84
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.84
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.84
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.83
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.83
COG2229	187	Predicted GTPase [General function prediction only	99.83
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.82
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.82
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.81
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.81
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.81
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.81
COG2262	411	HflX GTPases [General function prediction only]	99.81
PRK10218	607	GTP-binding protein; Provisional	99.81
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.8
PRK12317	425	elongation factor 1-alpha; Reviewed	99.8
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.8
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.8
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.8
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.8
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.8
COG0486	454	ThdF Predicted GTPase [General function prediction	99.8
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.79
COG0218	200	Predicted GTPase [General function prediction only	99.79
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.79
PRK04004	586	translation initiation factor IF-2; Validated	99.78
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.78
PRK12736	394	elongation factor Tu; Reviewed	99.78
PRK12735	396	elongation factor Tu; Reviewed	99.77
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.76
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.76
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.76
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.76
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.76
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.76
COG1084	346	Predicted GTPase [General function prediction only	99.74
CHL00071	409	tufA elongation factor Tu	99.74
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.73
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.73
COG1163	365	DRG Predicted GTPase [General function prediction	99.73
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.73
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.72
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.72
PRK00049	396	elongation factor Tu; Reviewed	99.71
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.7
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.7
PLN03126	478	Elongation factor Tu; Provisional	99.7
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.7
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.7
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.69
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.68
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.68
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.68
COG0536	369	Obg Predicted GTPase [General function prediction	99.68
PLN03127	447	Elongation factor Tu; Provisional	99.68
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.68
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.67
PTZ00141	446	elongation factor 1- alpha; Provisional	99.67
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.67
PRK13351	687	elongation factor G; Reviewed	99.67
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.67
PLN00043	447	elongation factor 1-alpha; Provisional	99.67
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.67
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.66
COG3596	296	Predicted GTPase [General function prediction only	99.66
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.65
PRK09866	741	hypothetical protein; Provisional	99.63
PRK09602	396	translation-associated GTPase; Reviewed	99.62
PRK12739	691	elongation factor G; Reviewed	99.62
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.61
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.61
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.58
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.58
KOG1145	683	consensus Mitochondrial translation initiation fac	99.56
PRK00007	693	elongation factor G; Reviewed	99.56
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.56
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.54
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.54
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.53
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.53
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.53
PRK12740	668	elongation factor G; Reviewed	99.53
PTZ00258	390	GTP-binding protein; Provisional	99.52
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.52
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.51
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.51
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.5
KOG0090	238	consensus Signal recognition particle receptor, be	99.49
PRK13768	253	GTPase; Provisional	99.46
PRK07560	731	elongation factor EF-2; Reviewed	99.43
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.43
PRK09601	364	GTP-binding protein YchF; Reviewed	99.43
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.42
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.42
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.41
PRK14845	1049	translation initiation factor IF-2; Provisional	99.41
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.39
PTZ00416	836	elongation factor 2; Provisional	99.39
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.39
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.38
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.38
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.37
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.37
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.37
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.37
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.37
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.37
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.35
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.35
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.35
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.34
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.34
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.34
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.34
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.32
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.31
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.31
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.3
KOG0410	410	consensus Predicted GTP binding protein [General f	99.29
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.27
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.26
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.23
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.23
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.21
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.21
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.17
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.14
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.14
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.13
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	99.13
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.1
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.07
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.06
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.05
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.04
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.01
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	98.99
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.99
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.95
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.94
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.94
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.93
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.91
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.89
PRK12289	352	GTPase RsgA; Reviewed	98.88
KOG3887	347	consensus Predicted small GTPase involved in nucle	98.86
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.85
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.82
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.81
KOG2486	320	consensus Predicted GTPase [General function predi	98.8
KOG1143	591	consensus Predicted translation elongation factor	98.8
PRK00098	298	GTPase RsgA; Reviewed	98.79
PRK12288	347	GTPase RsgA; Reviewed	98.78
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.76
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.75
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.75
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.74
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.73
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.72
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.7
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.7
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.7
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.7
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.69
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.66
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.65
COG1161	322	Predicted GTPases [General function prediction onl	98.65
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.62
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.6
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.6
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.59
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.52
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.51
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.49
KOG0460	449	consensus Mitochondrial translation elongation fac	98.49
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.49
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.48
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.46
PRK10416	318	signal recognition particle-docking protein FtsY;	98.46
PRK12288	347	GTPase RsgA; Reviewed	98.44
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.42
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.41
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.41
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.41
cd03112	158	CobW_like The function of this protein family is u	98.38
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.38
PRK14974	336	cell division protein FtsY; Provisional	98.36
PRK12289	352	GTPase RsgA; Reviewed	98.36
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.36
PRK13796	365	GTPase YqeH; Provisional	98.35
COG1162	301	Predicted GTPases [General function prediction onl	98.34
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.34
PRK13796	365	GTPase YqeH; Provisional	98.32
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.31
COG3523	1188	IcmF Type VI protein secretion system component Va	98.31
PRK01889	356	GTPase RsgA; Reviewed	98.29
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.28
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.26
KOG2484	435	consensus GTPase [General function prediction only	98.25
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.24
PRK13695	174	putative NTPase; Provisional	98.2
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.19
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.16
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.14
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.12
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.1
PRK00098	298	GTPase RsgA; Reviewed	98.1
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	98.1
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.09
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.07
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	98.06
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	98.05
COG0523	323	Putative GTPases (G3E family) [General function pr	98.04
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.03
cd03114	148	ArgK-like The function of this protein family is u	98.02
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	97.9
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.89
KOG1534	273	consensus Putative transcription factor FET5 [Tran	97.89
COG1162	301	Predicted GTPases [General function prediction onl	97.89
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.88
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.86
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.86
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.85
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.83
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.82
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.8
PRK10867	433	signal recognition particle protein; Provisional	97.78
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.76
TIGR00959	428	ffh signal recognition particle protein. This mode	97.76
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.74
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.73
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.71
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	97.7
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.68
KOG4273	418	consensus Uncharacterized conserved protein [Funct	97.67
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.67
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.63
cd03111	106	CpaE_like This protein family consists of proteins	97.62
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.6
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.59
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.54
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.52
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.48
PRK07261	171	topology modulation protein; Provisional	97.48
PRK08118	167	topology modulation protein; Reviewed	97.47
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.44
PRK14738	206	gmk guanylate kinase; Provisional	97.43
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.42
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	97.42
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	97.42
cd02036	179	MinD Bacterial cell division requires the formatio	97.42
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	97.42
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.4
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.39
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.38
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.36
cd03110	179	Fer4_NifH_child This protein family's function is	97.35
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.32
KOG1533	290	consensus Predicted GTPase [General function predi	97.31
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.3
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.26
KOG0446	657	consensus Vacuolar sorting protein VPS1, dynamin,	97.25
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.23
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.22
PRK10646	153	ADP-binding protein; Provisional	97.2
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	97.19
PRK06217	183	hypothetical protein; Validated	97.17
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	97.17
PRK01889	356	GTPase RsgA; Reviewed	97.16
PRK04195	482	replication factor C large subunit; Provisional	97.16
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.16
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.15
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.15
COG0802	149	Predicted ATPase or kinase [General function predi	97.14
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.13
PRK14737	186	gmk guanylate kinase; Provisional	97.13
PRK03839	180	putative kinase; Provisional	97.12
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	97.12
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.12
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.11
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.1
PF00004	132	AAA: ATPase family associated with various cellula	97.09
smart00382	148	AAA ATPases associated with a variety of cellular	97.09
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.08
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	97.07
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.06
PRK14530	215	adenylate kinase; Provisional	97.04
COG3845	501	ABC-type uncharacterized transport systems, ATPase	97.04
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.03
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.03
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.03
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	97.02
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.01
PRK05480	209	uridine/cytidine kinase; Provisional	97.01
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	97.0
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.98
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	96.97
cd03216	163	ABC_Carb_Monos_I This family represents the domain	96.97
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.96
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	96.96
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.96
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	96.96
PRK13949	169	shikimate kinase; Provisional	96.95
PRK14532	188	adenylate kinase; Provisional	96.94
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	96.94
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	96.93
PRK08233	182	hypothetical protein; Provisional	96.92
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	96.92
COG3638	258	ABC-type phosphate/phosphonate transport system, A	96.92

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.9e-42  Score=241.45  Aligned_cols=202  Identities=45%  Similarity=0.745  Sum_probs=179.1

Q ss_pred             CCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCC
Q 027856            7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGA   86 (217)
Q Consensus         7 ~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   86 (217)
                      ....++.+||+|+|++|+|||+|+.||....+...+..|+|.++...++.++++.+++++|||+|+++|+.+..++|+++
T Consensus         3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a   82 (205)
T KOG0084|consen    3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA   82 (205)
T ss_pred             CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCc-EEEEecCCCCCHHH
Q 027856           87 VGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTF-FMETSALESMNVEN  165 (217)
Q Consensus        87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~  165 (217)
                      |++|+|||+++.+||+.+..|+.++..+...+.|.++|+||+|+.+.+.++.++++.++..++.+ ++++||+++.|+++
T Consensus        83 hGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~  162 (205)
T KOG0084|consen   83 HGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVED  162 (205)
T ss_pred             CeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhccCCCCCCCCCCceeeecccCccccccccCCcC
Q 027856          166 AFTEVLTQIYRVVSRKALEIGDDPAALPKGQTINVGTKDDVSAVKKVGCCS  216 (217)
Q Consensus       166 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (217)
                      .|..|...+.+........-.      .....+.+..  .+..+..++||.
T Consensus       163 ~F~~la~~lk~~~~~~~~~~~------~~~~~~ql~~--~p~~~~~~~~C~  205 (205)
T KOG0084|consen  163 AFLTLAKELKQRKGLHVKWST------ASLESVQLKG--TPVKKSNGGCCE  205 (205)
T ss_pred             HHHHHHHHHHHhcccCCCCCc------CCCCceeeCC--CCcccccCCCCC
Confidence            999999888877654322211      1122333333  345555677984

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.5e-40  Score=234.73  Aligned_cols=210  Identities=74%  Similarity=1.127  Sum_probs=191.1

Q ss_pred             CCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCC
Q 027856            7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGA   86 (217)
Q Consensus         7 ~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   86 (217)
                      +.+.+..+||+++|++++|||-|+.||..+.|.....+|+|.++....+.++++.++.+||||+|+++|+....++|+.+
T Consensus         8 ~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgA   87 (222)
T KOG0087|consen    8 SEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGA   87 (222)
T ss_pred             ccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccc
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856           87 VGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA  166 (217)
Q Consensus        87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  166 (217)
                      .++++|||++...+|+.+..|+.+|+.+.+.++++++|+||+||...+.+..++++.++...+..++++||.++.|++..
T Consensus        88 vGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~a  167 (222)
T KOG0087|consen   88 VGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKA  167 (222)
T ss_pred             ceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHH
Confidence            99999999999999999999999999999999999999999999998999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhccCCCCCC---CCCCceeeecccCc--cccccccCCcC
Q 027856          167 FTEVLTQIYRVVSRKALEIGDDPAA---LPKGQTINVGTKDD--VSAVKKVGCCS  216 (217)
Q Consensus       167 ~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~  216 (217)
                      |..++..++...+++......++..   ..++..+.+...-+  ....++..||+
T Consensus       168 F~~~l~~I~~~vs~k~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~cc~  222 (222)
T KOG0087|consen  168 FERVLTEIYKIVSKKQLDENNDPLESSSPLQGQEISVHPTSEEPFSPTKKSGCCS  222 (222)
T ss_pred             HHHHHHHHHHHHHHHhhhccccccccCCCCCCcccccccCCccccccccCCCCCC
Confidence            9999999999999998887766422   23555665543332  35566778886

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-40  Score=234.05  Aligned_cols=198  Identities=41%  Similarity=0.723  Sum_probs=175.3

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...+||+++|..++|||||+-||..+.|.....+|+|..+...++.+++..+++.||||+|+++|.++...||++++++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            35789999999999999999999999999988899999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856           91 LVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  170 (217)
                      +|||+++.+||..++.|+.+|.....+++-+.+|+||+|+.+.+++..+++..+++..++.|+++||++|.|+.++|..|
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I  162 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI  162 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence            99999999999999999999999888788888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhccCCCCCCCCCCceeeecccCccccccccCCcC
Q 027856          171 LTQIYRVVSRKALEIGDDPAALPKGQTINVGTKDDVSAVKKVGCCS  216 (217)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (217)
                      .+.+.....+.....    +--+  ...++.+.+  ..+..++||+
T Consensus       163 a~~lp~~~~~~~~~~----~~~~--~g~~l~~~~--~~~~~~~~C~  200 (200)
T KOG0092|consen  163 AEKLPCSDPQERQGL----PNRR--QGVDLNSNQ--EPARPSGCCA  200 (200)
T ss_pred             HHhccCccccccccc----cccc--cceecccCC--CCcCcCCcCC
Confidence            999987765543211    1111  334444443  4466788985

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=2.3e-39  Score=220.53  Aligned_cols=170  Identities=46%  Similarity=0.760  Sum_probs=160.4

Q ss_pred             CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCc
Q 027856            8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAV   87 (217)
Q Consensus         8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   87 (217)
                      ......+||+++|.+|+|||||+.+|..+.|....+.|+|.++....+.+++..+++-+|||+|+++|+.+...||+++.
T Consensus         6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq   85 (209)
T KOG0080|consen    6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ   85 (209)
T ss_pred             cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence            34567899999999999999999999999999999899999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856           88 GALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA  166 (217)
Q Consensus        88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  166 (217)
                      ++|+|||++.+++|..+..|+.++.-+.. +++..++|+||+|...++.++.+|...+++++++.|+++||++.+|+...
T Consensus        86 GiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~  165 (209)
T KOG0080|consen   86 GIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCC  165 (209)
T ss_pred             eeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence            99999999999999999999999988775 56777899999999888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027856          167 FTEVLTQIYRV  177 (217)
Q Consensus       167 ~~~i~~~~~~~  177 (217)
                      |+.++.++.+.
T Consensus       166 FeelveKIi~t  176 (209)
T KOG0080|consen  166 FEELVEKIIET  176 (209)
T ss_pred             HHHHHHHHhcC
Confidence            99999998854

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.3e-39  Score=224.54  Aligned_cols=172  Identities=52%  Similarity=0.876  Sum_probs=166.0

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      ..+.+|++++|+.|+|||+|+.+|+...|.+.+..|.|.++-...++++++.+++++|||+|++.+++....||+.+-++
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga   82 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA   82 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 027856           90 LLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTE  169 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  169 (217)
                      |+|||+++++||..+..|+..++++..++..+++++||+|+...++++.+|.++|++++++.++++||++++|++++|..
T Consensus        83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~n  162 (216)
T KOG0098|consen   83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFIN  162 (216)
T ss_pred             EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHH
Confidence            99999999999999999999999998889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhh
Q 027856          170 VLTQIYRVVSRK  181 (217)
Q Consensus       170 i~~~~~~~~~~~  181 (217)
                      +...+++.....
T Consensus       163 ta~~Iy~~~q~g  174 (216)
T KOG0098|consen  163 TAKEIYRKIQDG  174 (216)
T ss_pred             HHHHHHHHHHhc
Confidence            999999886654

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.9e-39  Score=225.58  Aligned_cols=170  Identities=36%  Similarity=0.662  Sum_probs=160.9

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      .-..+|++++|+.++||||||.||..+.|...|.+|+|+++...++.+.+..+.+++|||+|+++|+++...|++++.++
T Consensus        19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va   98 (221)
T KOG0094|consen   19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   98 (221)
T ss_pred             cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence            34459999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCC-CcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 027856           90 LLVYDVTRHVTFENVERWLKELRDHTDSN-IVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFT  168 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~-~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  168 (217)
                      |+|||+++..||+....|++.+....+.+ ..+++|+||.||.+.++++.+|.+..++++++.|+++||+.|.|+.++|.
T Consensus        99 viVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFr  178 (221)
T KOG0094|consen   99 VIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFR  178 (221)
T ss_pred             EEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHH
Confidence            99999999999999999999999888764 78899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 027856          169 EVLTQIYRVVS  179 (217)
Q Consensus       169 ~i~~~~~~~~~  179 (217)
                      .|...+.+...
T Consensus       179 rIaa~l~~~~~  189 (221)
T KOG0094|consen  179 RIAAALPGMEV  189 (221)
T ss_pred             HHHHhccCccc
Confidence            98877776654

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=6.2e-38  Score=235.41  Aligned_cols=209  Identities=68%  Similarity=1.075  Sum_probs=176.3

Q ss_pred             CCCCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhc
Q 027856            5 RADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYR   84 (217)
Q Consensus         5 ~~~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   84 (217)
                      +...+.+..+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||+|++++..++..+++
T Consensus         4 ~~~~~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~   83 (216)
T PLN03110          4 RVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYR   83 (216)
T ss_pred             CcccccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhC
Confidence            33445667899999999999999999999999988888899999988888889998999999999999999999999999


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHH
Q 027856           85 GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVE  164 (217)
Q Consensus        85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  164 (217)
                      .++++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++
T Consensus        84 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~  163 (216)
T PLN03110         84 GAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVE  163 (216)
T ss_pred             CCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            99999999999999999999999999988766689999999999998777788888888888889999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhccCCC-C--CCCCCCceeeecccCccccccccCCcC
Q 027856          165 NAFTEVLTQIYRVVSRKALEIGDD-P--AALPKGQTINVGTKDDVSAVKKVGCCS  216 (217)
Q Consensus       165 ~~~~~i~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (217)
                      ++|+++++.+.+........-... .  ...++++++++  .+. ...|+++|||
T Consensus       164 ~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~c~  215 (216)
T PLN03110        164 KAFQTILLEIYHIISKKALAAQEAAANSGLPGQGTTINV--ADT-SGNNKRGCCS  215 (216)
T ss_pred             HHHHHHHHHHHHHhhccccccccCcccccCcCcCCcccc--cCc-cCCCCCCCcC
Confidence            999999999988765544333221 1  22245555555  222 3456678997

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.4e-38  Score=225.58  Aligned_cols=176  Identities=49%  Similarity=0.841  Sum_probs=168.7

Q ss_pred             CCCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcC
Q 027856            6 ADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG   85 (217)
Q Consensus         6 ~~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   85 (217)
                      ...+.+..++|+++|++|||||+|+.+|..+.|...+..|.|+++...++..++..+.+++|||+|+++++.+...|++.
T Consensus         5 ~~~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrg   84 (207)
T KOG0078|consen    5 AKEDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRG   84 (207)
T ss_pred             ccCCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhh
Confidence            34478899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHH
Q 027856           86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVEN  165 (217)
Q Consensus        86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  165 (217)
                      ++++++|||+++..||+++..|+..+.++...++|.++|+||+|+...+.++.+..++++.++|+.++|+||++|.||.+
T Consensus        85 A~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~e  164 (207)
T KOG0078|consen   85 AMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEE  164 (207)
T ss_pred             cCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHH
Confidence            99999999999999999999999999999988999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q 027856          166 AFTEVLTQIYRVVSRK  181 (217)
Q Consensus       166 ~~~~i~~~~~~~~~~~  181 (217)
                      .|-.+.+.+.......
T Consensus       165 aF~~La~~i~~k~~~~  180 (207)
T KOG0078|consen  165 AFLSLARDILQKLEDA  180 (207)
T ss_pred             HHHHHHHHHHhhcchh
Confidence            9999999999755543

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=2.3e-37  Score=230.27  Aligned_cols=195  Identities=37%  Similarity=0.629  Sum_probs=167.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCD-DKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      +||+++|++|+|||||+++|+++.+...+.+|.+.++....+.++ +..+.+.+|||||++.+..++..+++++|++++|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999999988888999888877778787 7889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhc----CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcC-CcEEEEecCCCCCHHHHH
Q 027856           93 YDVTRHVTFENVERWLKELRDHT----DSNIVIMLVGNKADLRHLRAVSTEDATAFAEREN-TFFMETSALESMNVENAF  167 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~  167 (217)
                      ||++++.+++.+..|+..+....    ..+.|+++|+||.|+.+.+.+..+++.+++...+ ..++++||++|.|++++|
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f  160 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM  160 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence            99999999999999998886532    2578999999999998656778889999999988 689999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhccCCCCCCCCCCceeeecccCccccccccCCc
Q 027856          168 TEVLTQIYRVVSRKALEIGDDPAALPKGQTINVGTKDDVSAVKKVGCC  215 (217)
Q Consensus       168 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (217)
                      +++++.+.+.+.....+..+       .+...+...++++.+|..|||
T Consensus       161 ~~l~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~  201 (201)
T cd04107         161 RFLVKNILANDKNLQQAETP-------EDGSVIDLKQTTTKKKSKGCC  201 (201)
T ss_pred             HHHHHHHHHhchhhHhhcCC-------CcccccccccceeccccCCCC
Confidence            99999998776554443332       223445555567777777999

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=2.7e-36  Score=223.42  Aligned_cols=164  Identities=39%  Similarity=0.731  Sum_probs=152.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      ++|+++|..|||||||+++|..+.|...+.+|.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            47999999999999999999999998888899998988888889998999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHc-CCcEEEEecCCCCCHHHHHHHHHH
Q 027856           94 DVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERE-NTFFMETSALESMNVENAFTEVLT  172 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~  172 (217)
                      |++++.|++.+..|+..+......+.|+++|+||+|+.+.+++..+++++++... ++.|+++||++|.|++++|.++++
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~  160 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD  160 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999999988776678999999999999877888888899898875 788999999999999999999999


Q ss_pred             HHHHH
Q 027856          173 QIYRV  177 (217)
Q Consensus       173 ~~~~~  177 (217)
                      .+...
T Consensus       161 ~~~~~  165 (202)
T cd04120         161 DILKK  165 (202)
T ss_pred             HHHHh
Confidence            88754

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=3.3e-37  Score=214.70  Aligned_cols=171  Identities=40%  Similarity=0.685  Sum_probs=159.2

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      -...+||+++|++|+|||||++++....|...+..|+|.++....+.+++..+.+++|||+|+++|.++...+|+++|..
T Consensus         6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC   85 (210)
T KOG0394|consen    6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC   85 (210)
T ss_pred             cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence            35679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCc--cCCCHHHHHHHHHHcC-CcEEEEecCCCCC
Q 027856           90 LLVYDVTRHVTFENVERWLKELRDHTD----SNIVIMLVGNKADLRHL--RAVSTEDATAFAEREN-TFFMETSALESMN  162 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~  162 (217)
                      ++|||+.++.||+.+..|..++.....    ...|+||++||+|+...  +.++...++++|...+ ++||++||+.+.|
T Consensus        86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~N  165 (210)
T KOG0394|consen   86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATN  165 (210)
T ss_pred             EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEeccccccc
Confidence            999999999999999999999987765    35789999999999763  6788999999999875 8899999999999


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 027856          163 VENAFTEVLTQIYRVVSR  180 (217)
Q Consensus       163 i~~~~~~i~~~~~~~~~~  180 (217)
                      +.+.|..+.+.+++....
T Consensus       166 V~~AFe~ia~~aL~~E~~  183 (210)
T KOG0394|consen  166 VDEAFEEIARRALANEDR  183 (210)
T ss_pred             HHHHHHHHHHHHHhccch
Confidence            999999999999987654

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=3.6e-36  Score=220.73  Aligned_cols=168  Identities=39%  Similarity=0.698  Sum_probs=154.8

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      .+..+||+++|..|+|||||+.+|..+.+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++
T Consensus         3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i   82 (189)
T cd04121           3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI   82 (189)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence            45679999999999999999999999988888878888888888888899999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 027856           90 LLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTE  169 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  169 (217)
                      ++|||++++.|++.+..|+..+.... ++.|++||+||.|+.+.+.++.++++.+++..++.++++||++|.|++++|++
T Consensus        83 llVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~  161 (189)
T cd04121          83 ILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTE  161 (189)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            99999999999999999999997765 58999999999999877788899999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 027856          170 VLTQIYRVV  178 (217)
Q Consensus       170 i~~~~~~~~  178 (217)
                      +++.+....
T Consensus       162 l~~~i~~~~  170 (189)
T cd04121         162 LARIVLMRH  170 (189)
T ss_pred             HHHHHHHhc
Confidence            998887544

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=2.6e-37  Score=210.12  Aligned_cols=213  Identities=32%  Similarity=0.571  Sum_probs=180.5

Q ss_pred             CCCCCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhh
Q 027856            4 YRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYY   83 (217)
Q Consensus         4 ~~~~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~   83 (217)
                      ...-......+||+++|..-+|||||+-|+..+.|.-....|....+....+.+.+....+.||||+|+++|..+-..||
T Consensus         4 ~~~~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYY   83 (218)
T KOG0088|consen    4 ETNVDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYY   83 (218)
T ss_pred             cccccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEE
Confidence            33444566789999999999999999999999999988888888888888898999999999999999999999999999


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCH
Q 027856           84 RGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNV  163 (217)
Q Consensus        84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  163 (217)
                      +.++++++|||++++.||+.+..|..+++...+..+.++||+||+|+.+++.++.++++++++..|+.|+++||+++.|+
T Consensus        84 RgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi  163 (218)
T KOG0088|consen   84 RGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGI  163 (218)
T ss_pred             eCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCH
Confidence            99999999999999999999999999999999889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceeeecccCc-cccccccCCcC
Q 027856          164 ENAFTEVLTQIYRVVSRKALEIGDDPAALPKGQTINVGTKDD-VSAVKKVGCCS  216 (217)
Q Consensus       164 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  216 (217)
                      .++|..+...+.+..++.+..-...+..-|..++...-...+ +-.+-.++||+
T Consensus       164 ~elFe~Lt~~MiE~~s~~qr~~~~~s~qpp~t~r~~~~iD~e~~a~~sg~~CC~  217 (218)
T KOG0088|consen  164 SELFESLTAKMIEHSSQRQRTRSPLSTQPPSTNRSIRLIDNEAEAERSGKRCCR  217 (218)
T ss_pred             HHHHHHHHHHHHHHhhhcccccCCcCCCCCCcccchhccCCCcccccccCCccC
Confidence            999999999999988766555433332222222222222222 22344556997

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=4.5e-37  Score=206.56  Aligned_cols=170  Identities=51%  Similarity=0.787  Sum_probs=162.0

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      +.++.++.+|+|++|+|||+|+.+|....|+.+|..|+|.++...++.++|..+++.||||+|++.|+.+...+++..++
T Consensus         4 ~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthg   83 (198)
T KOG0079|consen    4 DYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHG   83 (198)
T ss_pred             cHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCce
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 027856           89 ALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFT  168 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  168 (217)
                      +++|||+++.+||.++..|+++++..++ ..|-++|+||.|..+.+.+..+++..++...++.+|++|++.++|++.+|.
T Consensus        84 v~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~  162 (198)
T KOG0079|consen   84 VIVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFH  162 (198)
T ss_pred             EEEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHH
Confidence            9999999999999999999999998875 888999999999999889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 027856          169 EVLTQIYRVVS  179 (217)
Q Consensus       169 ~i~~~~~~~~~  179 (217)
                      -|.+.+.+...
T Consensus       163 cit~qvl~~k~  173 (198)
T KOG0079|consen  163 CITKQVLQAKL  173 (198)
T ss_pred             HHHHHHHHHHH
Confidence            99999888763

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=1.8e-35  Score=219.63  Aligned_cols=196  Identities=45%  Similarity=0.697  Sum_probs=163.9

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      +..++|+++|++|+|||||+++|.+..+...+.+|.+.++....+.+++..+.+.+||+||++.+..++..+++.+++++
T Consensus         4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii   83 (199)
T cd04110           4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI   83 (199)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence            45799999999999999999999999988888889888888888888888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856           91 LVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  170 (217)
                      +|||++++.+++.+..|+..+.... ...|+++|+||+|+.....+..+++..++...+..++++||++|.|++++|++|
T Consensus        84 lv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l  162 (199)
T cd04110          84 VVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCI  162 (199)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHH
Confidence            9999999999999999999987654 478999999999998766777888888888888999999999999999999999


Q ss_pred             HHHHHHHHhhhhhccCCCCCCCCCCceeeecccCccccccccCCc
Q 027856          171 LTQIYRVVSRKALEIGDDPAALPKGQTINVGTKDDVSAVKKVGCC  215 (217)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (217)
                      .+.+.......       .+-..+.+..+....+ ...+|+..||
T Consensus       163 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~-~~~~~~~~~~  199 (199)
T cd04110         163 TELVLRAKKDN-------LAKQQQQQQNDVVKLP-KNSKRKKRCC  199 (199)
T ss_pred             HHHHHHhhhcc-------CcccccCCccccCccc-hhccccccCC
Confidence            99998664432       1122222233333333 3336677888

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=1.8e-35  Score=217.88  Aligned_cols=187  Identities=45%  Similarity=0.739  Sum_probs=162.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|.+|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999999998878888888887788888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 027856           94 DVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  173 (217)
                      |++++.+++.+..|+..+........|+++|+||.|+.+...+..+++..++...+++++++||++|.|++++|.++++.
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~  160 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL  160 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999987766678999999999998767778888888888888999999999999999999999999


Q ss_pred             HHHHHhhhhhccCCCCCCCCCCceeeecccCccccccccCCcCC
Q 027856          174 IYRVVSRKALEIGDDPAALPKGQTINVGTKDDVSAVKKVGCCSN  217 (217)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (217)
                      +.....+.++.                 ..+..+..+|..||||
T Consensus       161 ~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~  187 (188)
T cd04125         161 IIKRLEEQELS-----------------PKNIKQQFKKKNNCFI  187 (188)
T ss_pred             HHHHhhcCcCC-----------------ccccccccccccCccc
Confidence            87654432111                 1334445667789986

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=2e-35  Score=218.12  Aligned_cols=190  Identities=42%  Similarity=0.667  Sum_probs=159.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      +||+++|++|||||||+++|..+.+.. .+.++.+.++....+.+++..+.+.||||||++.+...+..+++.+|++++|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999999998754 5667777777777778888889999999999999999899999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 027856           93 YDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLT  172 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  172 (217)
                      +|++++.+++.+..|+..+......+.|+++|+||.|+...+.+..++...++...+.+|+++||++|.|++++|.+|.+
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~  160 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999998876668999999999999776677778888888888999999999999999999999999


Q ss_pred             HHHHHHhhhhhccCCCCCCCCCCceeeecccCccccccccCCc
Q 027856          173 QIYRVVSRKALEIGDDPAALPKGQTINVGTKDDVSAVKKVGCC  215 (217)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (217)
                      .+.+.....+.+-.           . .-.....+.+|+.+||
T Consensus       161 ~~~~~~~~~~~~~~-----------~-~~~~~~~~~~~~~~~~  191 (191)
T cd04112         161 ELKHRKYEQPDEGK-----------F-KISDYVTKQKKISRCC  191 (191)
T ss_pred             HHHHhccccCCCCc-----------E-EeccccCcccccCCCC
Confidence            88766432111111           0 1223346667888999

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=1.8e-35  Score=221.31  Aligned_cols=187  Identities=35%  Similarity=0.567  Sum_probs=153.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+|+|.+|+|||||+++|+.+.+.. +.+|.+.++....+    ..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            589999999999999999999999864 45676665543332    4578999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC-------------------ccCCCHHHHHHHHHHcC-----
Q 027856           94 DVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH-------------------LRAVSTEDATAFAEREN-----  149 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~-----  149 (217)
                      |++++.+++.+..|+..+......+.|+++|+||+|+.+                   .+.+..+++..++...+     
T Consensus        76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~  155 (220)
T cd04126          76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML  155 (220)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence            999999999998888777765556799999999999975                   56788999999998876     


Q ss_pred             ---------CcEEEEecCCCCCHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceeeecccCccccccccCCc
Q 027856          150 ---------TFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDPAALPKGQTINVGTKDDVSAVKKVGCC  215 (217)
Q Consensus       150 ---------~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (217)
                               +.|+++||++|.|++++|..+++.+++...++..+-++.      ...+.+..++    ++|.+||
T Consensus       156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~~----~~~~~~~  220 (220)
T cd04126         156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRT------QGTVNLPNPK----RSKSKCC  220 (220)
T ss_pred             cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhh------hccccCCCcc----cCCCCCC
Confidence                     679999999999999999999999998877665433221      2234444433    6788999

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=1.7e-35  Score=218.39  Aligned_cols=185  Identities=34%  Similarity=0.506  Sum_probs=154.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEE
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d   94 (217)
                      +|+++|.+|+|||||+++|..+.+...+.++.+..+ .....+++..+.+.+|||||++++..++..+++.+|++++|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            589999999999999999999998887777776544 3445678888899999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 027856           95 VTRHVTFENVERWLKELRDHTD---SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        95 ~~~~~s~~~~~~~~~~l~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~  171 (217)
                      ++++.+++.+..|+..+.....   .+.|+++|+||+|+.+.+.+...++..++...++.++++||++|.|++++|++++
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~  159 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV  159 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999988866542   4789999999999987677888888888888889999999999999999999999


Q ss_pred             HHHHHHHhhhhhccCCCCCCCCCCceeeecccCccccccccCCc
Q 027856          172 TQIYRVVSRKALEIGDDPAALPKGQTINVGTKDDVSAVKKVGCC  215 (217)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (217)
                      +.+.......     .         ++ ..++...+.||++.||
T Consensus       160 ~~l~~~~~~~-----~---------~~-~~~~~~~~~~~~~~~~  188 (190)
T cd04144         160 RALRQQRQGG-----Q---------GP-KGGPTKKKEKKKRKCV  188 (190)
T ss_pred             HHHHHhhccc-----C---------CC-cCCCCCcccccccCce
Confidence            8877555442     1         11 3344445666676776

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.5e-36  Score=201.82  Aligned_cols=206  Identities=36%  Similarity=0.702  Sum_probs=178.1

Q ss_pred             CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCc
Q 027856            8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAV   87 (217)
Q Consensus         8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   87 (217)
                      .+....+||+++|..|+|||.|+++|+.+.|++....|+|.++-..++.+++..+++++|||+|+++++++...+++.++
T Consensus         2 edykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsah   81 (213)
T KOG0095|consen    2 EDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAH   81 (213)
T ss_pred             cccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcc
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Q 027856           88 GALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAF  167 (217)
Q Consensus        88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  167 (217)
                      ++|+|||++...||+-+..|+.++.++.....--|+|+||+|+.+.++++....++|.+.....|+++||++..|++.+|
T Consensus        82 alilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf  161 (213)
T KOG0095|consen   82 ALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLF  161 (213)
T ss_pred             eEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHH
Confidence            99999999999999999999999999988888889999999999988999999999999988999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhccCC---CCCCCCCCceeeecccCccccccccCCcC
Q 027856          168 TEVLTQIYRVVSRKALEIGD---DPAALPKGQTINVGTKDDVSAVKKVGCCS  216 (217)
Q Consensus       168 ~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (217)
                      ..+.-.+......+.....-   .+.....|.+|.+.+.-   +.+...||.
T Consensus       162 ~~~a~rli~~ar~~d~v~~~~a~a~~~~seg~si~l~s~a---qt~~~~cc~  210 (213)
T KOG0095|consen  162 LDLACRLISEARQNDLVNNVSAPAPNSSSEGKSIKLISYA---QTQLLTCCN  210 (213)
T ss_pred             HHHHHHHHHHHHhccchhhccccCccccCCCCcccchhHH---HHHHhcccc
Confidence            98887666555444332211   12233566677666652   234457774

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=6.5e-35  Score=219.09  Aligned_cols=164  Identities=34%  Similarity=0.552  Sum_probs=149.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECC-eEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDD-KIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      +||+++|.+|+|||||+++|.+..+...+.+|.+.++....+.+++ ..+.+.+|||+|++.+..++..+++.+|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999999889999999888888887754 578999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 027856           93 YDVTRHVTFENVERWLKELRDHTD---SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTE  169 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  169 (217)
                      ||++++.+++.+..|+..+.....   .+.|+++|+||+|+.+.+.+..+++..++...++.++++||++|.|++++|++
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~  160 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ  160 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            999999999999999999987653   35689999999999876778888899999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027856          170 VLTQIYRV  177 (217)
Q Consensus       170 i~~~~~~~  177 (217)
                      +.+.+...
T Consensus       161 l~~~l~~~  168 (215)
T cd04109         161 LAAELLGV  168 (215)
T ss_pred             HHHHHHhc
Confidence            99988865

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=1.6e-34  Score=217.37  Aligned_cols=176  Identities=24%  Similarity=0.434  Sum_probs=155.4

Q ss_pred             CCCCCCCCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhh
Q 027856            1 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITS   80 (217)
Q Consensus         1 ~~~~~~~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~   80 (217)
                      |...+..++....+||+++|++|||||+|+++|..+.|...+.+|.+..+. ..+.+++..+.+.||||+|++.|..++.
T Consensus         1 ~~~~~~~~~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~   79 (232)
T cd04174           1 MKERRIPQPLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRP   79 (232)
T ss_pred             CcccccCcCceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHH
Confidence            455556666678899999999999999999999999999889899876664 4577889999999999999999999999


Q ss_pred             hhhcCCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCC------------ccCCCHHHHHHHHHH
Q 027856           81 AYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRH------------LRAVSTEDATAFAER  147 (217)
Q Consensus        81 ~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~  147 (217)
                      .+++++|++++|||++++.|++.+ ..|+..+.... ++.|+++|+||+|+.+            .+.++.+++++++..
T Consensus        80 ~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~  158 (232)
T cd04174          80 LCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQ  158 (232)
T ss_pred             HHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHH
Confidence            999999999999999999999984 78999998765 4789999999999964            256889999999999


Q ss_pred             cCC-cEEEEecCCCC-CHHHHHHHHHHHHHHHH
Q 027856          148 ENT-FFMETSALESM-NVENAFTEVLTQIYRVV  178 (217)
Q Consensus       148 ~~~-~~~~~Sa~~~~-~i~~~~~~i~~~~~~~~  178 (217)
                      +++ .|+++||++|. |++++|..++..+++..
T Consensus       159 ~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~~  191 (232)
T cd04174         159 LGAEVYLECSAFTSEKSIHSIFRSASLLCLNKL  191 (232)
T ss_pred             cCCCEEEEccCCcCCcCHHHHHHHHHHHHHHhc
Confidence            998 59999999998 89999999999888653

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=1.2e-34  Score=209.36  Aligned_cols=164  Identities=51%  Similarity=0.869  Sum_probs=151.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|++++|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            47999999999999999999999999888888888888777788888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 027856           93 YDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLT  172 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  172 (217)
                      ||++++.+++.+..|+..+.....++.|+++|+||+|+...+.+..+++..++...++.++++||++|.|+.++|.++++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~  161 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK  161 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999987776678999999999999887778888999999999999999999999999999999998


Q ss_pred             HHHH
Q 027856          173 QIYR  176 (217)
Q Consensus       173 ~~~~  176 (217)
                      .+++
T Consensus       162 ~~~~  165 (166)
T cd04122         162 KIYQ  165 (166)
T ss_pred             HHhh
Confidence            8764

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.2e-35  Score=198.21  Aligned_cols=174  Identities=41%  Similarity=0.756  Sum_probs=164.6

Q ss_pred             CCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCC
Q 027856            7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGA   86 (217)
Q Consensus         7 ~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   86 (217)
                      ++..+...|+.++|+..+|||||+.++++..|.+.+-.|.|+++...++.-..+.+++++|||.|+++|+.+...+++++
T Consensus        15 dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRga   94 (193)
T KOG0093|consen   15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGA   94 (193)
T ss_pred             cccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhcc
Confidence            44567788999999999999999999999999999999999999999887788889999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856           87 VGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA  166 (217)
Q Consensus        87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  166 (217)
                      +++|+|||+.+.+|+..++.|...+..+.-.+.|+|+|+||+|+..++.++.+....+++++|+.||++||+.+.|+.++
T Consensus        95 mgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~  174 (193)
T KOG0093|consen   95 MGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQV  174 (193)
T ss_pred             ceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHH
Confidence            99999999999999999999999999888889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 027856          167 FTEVLTQIYRVVSR  180 (217)
Q Consensus       167 ~~~i~~~~~~~~~~  180 (217)
                      |+.++..+-+..+.
T Consensus       175 Fe~lv~~Ic~kmse  188 (193)
T KOG0093|consen  175 FERLVDIICDKMSE  188 (193)
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999988877654

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=4.5e-34  Score=213.66  Aligned_cols=169  Identities=53%  Similarity=0.886  Sum_probs=154.6

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      +..+||+++|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|+++
T Consensus         4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v   83 (210)
T PLN03108          4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            46799999999999999999999999988888888888888888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856           91 LVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  170 (217)
                      +|||++++.+++.+..|+..+........|+++|+||+|+.+.+.++.++.++++..++++++++||+++.|++++|.++
T Consensus        84 lv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l  163 (210)
T PLN03108         84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT  163 (210)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999988876666689999999999998777788889999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 027856          171 LTQIYRVVS  179 (217)
Q Consensus       171 ~~~~~~~~~  179 (217)
                      ++.+++...
T Consensus       164 ~~~~~~~~~  172 (210)
T PLN03108        164 AAKIYKKIQ  172 (210)
T ss_pred             HHHHHHHhh
Confidence            999987643

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=1.2e-34  Score=213.64  Aligned_cols=166  Identities=35%  Similarity=0.542  Sum_probs=146.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..+||+++|.+|+|||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++++
T Consensus         4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            358999999999999999999999998877777776555 4566778888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856           92 VYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  170 (217)
                      |||++++.+++.+..|+..+..... .+.|+++|+||.|+.+.+.+..+++..++...+.+++++||++|.|+.++|.++
T Consensus        83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l  162 (189)
T PTZ00369         83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL  162 (189)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence            9999999999999999998876543 478999999999997766677778888888888899999999999999999999


Q ss_pred             HHHHHHHH
Q 027856          171 LTQIYRVV  178 (217)
Q Consensus       171 ~~~~~~~~  178 (217)
                      ++.+....
T Consensus       163 ~~~l~~~~  170 (189)
T PTZ00369        163 VREIRKYL  170 (189)
T ss_pred             HHHHHHHh
Confidence            98887543

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=2.8e-35  Score=201.16  Aligned_cols=179  Identities=44%  Similarity=0.745  Sum_probs=165.1

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEE-CCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRC-DDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      .+.+++++++|++-+|||+|++.|+.+.+..-..||.|.+++...+.. .|..+++++|||+|+++++++...+++++-+
T Consensus         5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvg   84 (213)
T KOG0091|consen    5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVG   84 (213)
T ss_pred             eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence            467899999999999999999999999999999999999998887766 6888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcC-CCC-cEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856           89 ALLVYDVTRHVTFENVERWLKELRDHTD-SNI-VIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA  166 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~-p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  166 (217)
                      +++|||+++++||+.++.|+.+..-... +.+ -+.+|++|+|+...++++.+|++.++..++..|+++|+++|.|+++.
T Consensus        85 vllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEA  164 (213)
T KOG0091|consen   85 VLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEA  164 (213)
T ss_pred             eEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHH
Confidence            9999999999999999999999876665 444 45779999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhccCCC
Q 027856          167 FTEVLTQIYRVVSRKALEIGDD  188 (217)
Q Consensus       167 ~~~i~~~~~~~~~~~~~~~~~~  188 (217)
                      |..+.+.+++...+.+.-+.+.
T Consensus       165 F~mlaqeIf~~i~qGeik~edg  186 (213)
T KOG0091|consen  165 FDMLAQEIFQAIQQGEIKLEDG  186 (213)
T ss_pred             HHHHHHHHHHHHhcCceeeeec
Confidence            9999999999998877777664

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=2.9e-34  Score=207.67  Aligned_cols=166  Identities=51%  Similarity=0.860  Sum_probs=152.2

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      +..+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|+++
T Consensus         1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i   80 (167)
T cd01867           1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII   80 (167)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence            35699999999999999999999999999988899988887778888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856           91 LVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  170 (217)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  160 (167)
T cd01867          81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL  160 (167)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999987766689999999999998766778888888999889999999999999999999999


Q ss_pred             HHHHHH
Q 027856          171 LTQIYR  176 (217)
Q Consensus       171 ~~~~~~  176 (217)
                      ++.+..
T Consensus       161 ~~~~~~  166 (167)
T cd01867         161 AKDIKK  166 (167)
T ss_pred             HHHHHh
Confidence            988753

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.9e-35  Score=197.90  Aligned_cols=184  Identities=46%  Similarity=0.758  Sum_probs=172.2

Q ss_pred             CCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCC
Q 027856            7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGA   86 (217)
Q Consensus         7 ~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   86 (217)
                      +...+..+|++++|+.|+|||.|+.+|..+.+......|+|.++....+.+.++.+++++|||+|+++|++..+.||+++
T Consensus         3 sEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGA   82 (214)
T KOG0086|consen    3 SETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA   82 (214)
T ss_pred             chhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence            44567899999999999999999999999999999989999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856           87 VGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA  166 (217)
Q Consensus        87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  166 (217)
                      -+.++|||++++++|+.+..|+...+....+++.+++++||.|+.+.++++..|+..|++++.+.+.++|+++|+|+++.
T Consensus        83 AGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEa  162 (214)
T KOG0086|consen   83 AGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEA  162 (214)
T ss_pred             cceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHH
Confidence            99999999999999999999999999998889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhccCCCCC
Q 027856          167 FTEVLTQIYRVVSRKALEIGDDPA  190 (217)
Q Consensus       167 ~~~i~~~~~~~~~~~~~~~~~~~~  190 (217)
                      |-...+.+.......++.-++...
T Consensus       163 Fl~c~~tIl~kIE~GElDPer~gs  186 (214)
T KOG0086|consen  163 FLKCARTILNKIESGELDPERMGS  186 (214)
T ss_pred             HHHHHHHHHHHHhhcCCCHHHccc
Confidence            999999999888777665554433

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=3e-34  Score=209.56  Aligned_cols=163  Identities=29%  Similarity=0.509  Sum_probs=146.2

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...+||+++|++|+|||||+++|..+.+...+.+|.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|+++
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i   81 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   81 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence            4568999999999999999999999999888888887655 356778899999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCC------------ccCCCHHHHHHHHHHcCC-cEEEEe
Q 027856           91 LVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRH------------LRAVSTEDATAFAERENT-FFMETS  156 (217)
Q Consensus        91 ~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~S  156 (217)
                      +|||++++.|++.+ ..|+..+.... ++.|+++|+||.|+.+            .+.++.++++++++..++ .|+++|
T Consensus        82 lvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S  160 (182)
T cd04172          82 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS  160 (182)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence            99999999999997 78999998765 5799999999999864            245889999999999996 899999


Q ss_pred             cCCCCC-HHHHHHHHHHHHH
Q 027856          157 ALESMN-VENAFTEVLTQIY  175 (217)
Q Consensus       157 a~~~~~-i~~~~~~i~~~~~  175 (217)
                      |++|.| ++++|..+++.++
T Consensus       161 Ak~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         161 ALQSENSVRDIFHVATLACV  180 (182)
T ss_pred             cCCCCCCHHHHHHHHHHHHh
Confidence            999998 9999999998643

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=4.2e-34  Score=207.62  Aligned_cols=165  Identities=32%  Similarity=0.491  Sum_probs=147.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|.+|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++++|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            47999999999999999999999999888878877444 44567788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 027856           93 YDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~  171 (217)
                      ||++++.|++.+..|+..+.... ..+.|+++|+||+|+.+.+.++.+++..+++..+++|+++||++|.|++++|++++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~  160 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV  160 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence            99999999999988888877643 35799999999999987777888899999998999999999999999999999999


Q ss_pred             HHHHHHH
Q 027856          172 TQIYRVV  178 (217)
Q Consensus       172 ~~~~~~~  178 (217)
                      +.+.+..
T Consensus       161 ~~~~~~~  167 (172)
T cd04141         161 REIRRKE  167 (172)
T ss_pred             HHHHHhc
Confidence            8887644

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=1.1e-33  Score=204.16  Aligned_cols=162  Identities=42%  Similarity=0.742  Sum_probs=147.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+|||+|++.+...+..+++++|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999998888888888777777777888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 027856           94 DVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  173 (217)
                      |.+++.+++.+..|+..+........|+++|+||+|+.+.+.+..++..+++...+.+++++||++|.|+.++|+++.+.
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  161 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI  161 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999999999999987765688999999999998767777888888888888999999999999999999999986


Q ss_pred             HH
Q 027856          174 IY  175 (217)
Q Consensus       174 ~~  175 (217)
                      +.
T Consensus       162 ~~  163 (165)
T cd01865         162 IC  163 (165)
T ss_pred             HH
Confidence            54

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=4e-34  Score=207.73  Aligned_cols=159  Identities=31%  Similarity=0.571  Sum_probs=143.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|.+|+|||||+.+|..+.+...+.+|.+..+ ...+.+++..+.+.+|||+|++++..++..+++++|++|+||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            7999999999999999999999999888889887665 445677888999999999999999999999999999999999


Q ss_pred             ECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCcc----------CCCHHHHHHHHHHcCC-cEEEEecCCCC
Q 027856           94 DVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRHLR----------AVSTEDATAFAERENT-FFMETSALESM  161 (217)
Q Consensus        94 d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  161 (217)
                      |++++.||+.+ ..|+..+.... .+.|+++|+||+|+.+.+          .+..+++..+++..++ .|+++||++|.
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~  159 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ  159 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence            99999999998 68999987665 479999999999996532          4788999999999987 59999999999


Q ss_pred             CHHHHHHHHHHHH
Q 027856          162 NVENAFTEVLTQI  174 (217)
Q Consensus       162 ~i~~~~~~i~~~~  174 (217)
                      |++++|+.+++.+
T Consensus       160 nV~~~F~~~~~~~  172 (176)
T cd04133         160 NVKAVFDAAIKVV  172 (176)
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999999865

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=9e-34  Score=203.84  Aligned_cols=160  Identities=43%  Similarity=0.734  Sum_probs=147.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      ++|+++|++|+|||||+++|+.+.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            48999999999999999999999998888899888888788888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 027856           94 DVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  173 (217)
                      |++++.|++.+..|+..+......+.|+++|+||.|+...+.+..+++..+++..+++|+++||++|.|++++|.+|++.
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            99999999999999999887765679999999999998777788889999999899999999999999999999999864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=2.5e-33  Score=209.68  Aligned_cols=170  Identities=45%  Similarity=0.743  Sum_probs=152.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEE-CCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRC-DDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      .+||+++|++|+|||||+++|+++.+...+.++.+.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            589999999999999999999999998888888888887777776 4667899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856           92 VYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  170 (217)
                      |||++++.+++.+..|+..+..... ...|+++|+||.|+.+.+.+..++...++..+++.++++||++|.|+.++|++|
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l  161 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL  161 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999999876553 357789999999998777788888999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhh
Q 027856          171 LTQIYRVVSRKA  182 (217)
Q Consensus       171 ~~~~~~~~~~~~  182 (217)
                      .+.+++.....+
T Consensus       162 ~~~~~~~~~~~~  173 (211)
T cd04111         162 TQEIYERIKRGE  173 (211)
T ss_pred             HHHHHHHhhcCC
Confidence            999988876654

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=2.2e-33  Score=203.25  Aligned_cols=166  Identities=54%  Similarity=0.878  Sum_probs=152.6

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      +..+||+++|.+|+|||||++++++..+...+.++.+.+.....+..++..+.+.+||+||++++..++..+++.+|+++
T Consensus         2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il   81 (168)
T cd01866           2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   81 (168)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence            45789999999999999999999999988888888888888888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856           91 LVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  170 (217)
                      +|+|++++.+++.+..|+..+.....++.|+++|+||.|+.....+..+++..++...++.++++||+++.|++++|.++
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~  161 (168)
T cd01866          82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT  161 (168)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999987766789999999999998766778888888998899999999999999999999999


Q ss_pred             HHHHHH
Q 027856          171 LTQIYR  176 (217)
Q Consensus       171 ~~~~~~  176 (217)
                      .+.+++
T Consensus       162 ~~~~~~  167 (168)
T cd01866         162 AKEIYE  167 (168)
T ss_pred             HHHHHh
Confidence            988764

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=1.4e-33  Score=202.91  Aligned_cols=161  Identities=39%  Similarity=0.705  Sum_probs=153.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEE
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d   94 (217)
                      ||+++|++|+|||||+++|.++.+...+.++.+.+.....+.+++..+.+.+||++|++.+..++..++.++|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHH
Q 027856           95 VTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus        95 ~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  174 (217)
                      ++++.|++.+..|+..+......+.|+++|+||.|+.+.+.++.+++++++..++.+|+++||+++.|+.++|..+++.+
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i  160 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI  160 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            99999999999999999988876799999999999998889999999999999999999999999999999999999987


Q ss_pred             H
Q 027856          175 Y  175 (217)
Q Consensus       175 ~  175 (217)
                      +
T Consensus       161 ~  161 (162)
T PF00071_consen  161 L  161 (162)
T ss_dssp             H
T ss_pred             h
Confidence            5

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=1.9e-33  Score=203.13  Aligned_cols=163  Identities=51%  Similarity=0.809  Sum_probs=149.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            48999999999999999999999998888888888888878888888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 027856           93 YDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLT  172 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  172 (217)
                      ||++++.++..+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|..|.+
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  161 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR  161 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence            99999999999999999998776567999999999999876777888899999999999999999999999999999998


Q ss_pred             HHH
Q 027856          173 QIY  175 (217)
Q Consensus       173 ~~~  175 (217)
                      .+.
T Consensus       162 ~~~  164 (166)
T cd01869         162 EIK  164 (166)
T ss_pred             HHH
Confidence            775

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=9.5e-34  Score=206.52  Aligned_cols=161  Identities=27%  Similarity=0.505  Sum_probs=143.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|++|+|||||+++|.++.+...+.+|.+..+. ..+.+++..+.+.+|||+|++.+..++..+++++|++++|
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv   79 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC   79 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence            379999999999999999999999998888888876653 5677889999999999999999999999999999999999


Q ss_pred             EECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCC------------ccCCCHHHHHHHHHHcCC-cEEEEecC
Q 027856           93 YDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRH------------LRAVSTEDATAFAERENT-FFMETSAL  158 (217)
Q Consensus        93 ~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~  158 (217)
                      ||++++.|++.+ ..|+..+.... ++.|+++|+||.|+.+            .+.++.+++++++...++ .|+++||+
T Consensus        80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~  158 (178)
T cd04131          80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF  158 (178)
T ss_pred             EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence            999999999996 78999998765 5799999999999964            235888999999999997 79999999


Q ss_pred             CCCC-HHHHHHHHHHHHH
Q 027856          159 ESMN-VENAFTEVLTQIY  175 (217)
Q Consensus       159 ~~~~-i~~~~~~i~~~~~  175 (217)
                      +|++ ++++|..+++.++
T Consensus       159 ~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         159 TSEKSVRDIFHVATMACL  176 (178)
T ss_pred             cCCcCHHHHHHHHHHHHh
Confidence            9995 9999999998544

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=2.3e-33  Score=205.25  Aligned_cols=167  Identities=41%  Similarity=0.721  Sum_probs=149.2

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEEC----------CeEEEEEEEeCCChhhhhhhhh
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCD----------DKIVKAQIWDTAGQERYRAITS   80 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~Dt~G~~~~~~~~~   80 (217)
                      +..+||+++|++|||||||+++|.++.+...+.++.+.++....+.+.          +..+.+.+|||||++.+...+.
T Consensus         2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   81 (180)
T cd04127           2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT   81 (180)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence            356999999999999999999999999988888888888776666554          4568999999999999999999


Q ss_pred             hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCC
Q 027856           81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALE  159 (217)
Q Consensus        81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  159 (217)
                      .+++++|++++|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++
T Consensus        82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~  161 (180)
T cd04127          82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAAT  161 (180)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence            99999999999999999999999999999987654 34789999999999987777888889999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 027856          160 SMNVENAFTEVLTQIYRV  177 (217)
Q Consensus       160 ~~~i~~~~~~i~~~~~~~  177 (217)
                      |.|++++|+++++.+.++
T Consensus       162 ~~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         162 GTNVEKAVERLLDLVMKR  179 (180)
T ss_pred             CCCHHHHHHHHHHHHHhh
Confidence            999999999999887653

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=1.8e-33  Score=203.25  Aligned_cols=162  Identities=33%  Similarity=0.641  Sum_probs=148.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|++|+|||||+++|+++.+...+.++.+.++....+..++..+.+.+|||||++.+..++..+++.+|++|+|+
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999998888899998888888888888999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcC-----CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 027856           94 DVTRHVTFENVERWLKELRDHTD-----SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFT  168 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~-----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  168 (217)
                      |++++.+++.+..|+..+.....     ...|+++|+||+|+.+......++...++...+++++++||++|.|+.++|+
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  160 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ  160 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999999987654     4689999999999976566778888888888889999999999999999999


Q ss_pred             HHHHHHH
Q 027856          169 EVLTQIY  175 (217)
Q Consensus       169 ~i~~~~~  175 (217)
                      +|++.+.
T Consensus       161 ~l~~~l~  167 (168)
T cd04119         161 TLFSSIV  167 (168)
T ss_pred             HHHHHHh
Confidence            9998775

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=2.6e-33  Score=202.22  Aligned_cols=163  Identities=81%  Similarity=1.200  Sum_probs=149.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..++|+++|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.++++++
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            45899999999999999999999999888888999888888888888888899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 027856           92 VYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~  171 (217)
                      |+|++++.+++.+..|+..+......+.|+++|+||.|+...+.+..++...++...++.++++||++|.|++++|++++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  161 (165)
T cd01868          82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL  161 (165)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            99999999999999999999887666799999999999987777788888888888889999999999999999999998


Q ss_pred             HHH
Q 027856          172 TQI  174 (217)
Q Consensus       172 ~~~  174 (217)
                      ..+
T Consensus       162 ~~i  164 (165)
T cd01868         162 TEI  164 (165)
T ss_pred             HHh
Confidence            765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=3.7e-33  Score=205.88  Aligned_cols=161  Identities=30%  Similarity=0.540  Sum_probs=141.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|..|+|||||+.+|..+.+...+.+|.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++|+|
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            48999999999999999999999999888888887654 34456788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCcc------------CCCHHHHHHHHHHcC-CcEEEEecC
Q 027856           93 YDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHLR------------AVSTEDATAFAEREN-TFFMETSAL  158 (217)
Q Consensus        93 ~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~  158 (217)
                      ||++++.|++.+. .|+..+.... .+.|+++|+||.|+.+..            .+..+++++++...+ ..|+++||+
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk  160 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence            9999999999996 5888877654 479999999999996532            356778889999888 589999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 027856          159 ESMNVENAFTEVLTQIY  175 (217)
Q Consensus       159 ~~~~i~~~~~~i~~~~~  175 (217)
                      +|.|++++|+++++.+.
T Consensus       161 ~g~~v~e~f~~l~~~~~  177 (191)
T cd01875         161 NQDGVKEVFAEAVRAVL  177 (191)
T ss_pred             CCCCHHHHHHHHHHHHh
Confidence            99999999999998775

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=3.5e-33  Score=204.29  Aligned_cols=163  Identities=28%  Similarity=0.515  Sum_probs=143.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|..|+|||||+++|+.+.+...+.+|.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999998888899998888888888998999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCc-----cCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 027856           94 DVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL-----RAVSTEDATAFAERENTFFMETSALESMNVENAFT  168 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  168 (217)
                      |++++.+++.+..|+..+........| ++|+||+|+...     .+...++.+++++..++.++++||++|.|++++|+
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~  159 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK  159 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999999876555566 688999999521     11224567778888889999999999999999999


Q ss_pred             HHHHHHHHH
Q 027856          169 EVLTQIYRV  177 (217)
Q Consensus       169 ~i~~~~~~~  177 (217)
                      ++.+.+.+.
T Consensus       160 ~l~~~l~~~  168 (182)
T cd04128         160 IVLAKAFDL  168 (182)
T ss_pred             HHHHHHHhc
Confidence            999988753

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=6.5e-33  Score=200.14  Aligned_cols=162  Identities=48%  Similarity=0.808  Sum_probs=147.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..+||+++|++|+|||||+++|..+.+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            46899999999999999999999999888888888888877888888888899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCC-cEEEEecCCCCCHHHHHHHH
Q 027856           92 VYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENT-FFMETSALESMNVENAFTEV  170 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i  170 (217)
                      |||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..+++..+. .++++||++|.|++++|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l  161 (165)
T cd01864          82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM  161 (165)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999999876666899999999999987777788888888888875 58999999999999999999


Q ss_pred             HHH
Q 027856          171 LTQ  173 (217)
Q Consensus       171 ~~~  173 (217)
                      .+.
T Consensus       162 ~~~  164 (165)
T cd01864         162 ATE  164 (165)
T ss_pred             HHh
Confidence            865

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=1.1e-32  Score=203.94  Aligned_cols=164  Identities=35%  Similarity=0.636  Sum_probs=143.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      +||+++|.+|+|||||+++|+++.+.. .+.++.+..+....+.+++..+.+.+||++|++++..++..++.++|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999998874 5778888777777888899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCc----cCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 027856           93 YDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL----RAVSTEDATAFAERENTFFMETSALESMNVENAFT  168 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  168 (217)
                      ||++++.+++.+..|+..+.... .+.|+++|+||+|+...    ..+..+++..++...++.++++||++|.|++++|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  159 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ  159 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999989999887653 47899999999998542    34556677888888888999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027856          169 EVLTQIYRVV  178 (217)
Q Consensus       169 ~i~~~~~~~~  178 (217)
                      ++.+.+.+..
T Consensus       160 ~i~~~~~~~~  169 (193)
T cd04118         160 KVAEDFVSRA  169 (193)
T ss_pred             HHHHHHHHhc
Confidence            9999887544

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=7.2e-33  Score=199.10  Aligned_cols=160  Identities=52%  Similarity=0.854  Sum_probs=148.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999999998888888888888888888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 027856           94 DVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  173 (217)
                      |++++.++..+..|+..+.....++.|+++|+||+|+...+.+..+++..++...++.++++||+++.|++++|+++++.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            99999999999999999877766789999999999998777788888999999999999999999999999999999865

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=1e-32  Score=207.40  Aligned_cols=165  Identities=32%  Similarity=0.544  Sum_probs=147.0

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...+||+++|.+|||||||+++++.+.+...+.+|.+.++....+..++..+.+.+|||+|++.+..++..+++.+|++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            67899999999999999999999999998888899998888888878888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856           91 LVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  170 (217)
                      +|||++++.+++.+..|+..+.... .+.|+++|+||+|+.. +.+..+++ .++...++.|+++||++|.|+.++|.+|
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l  167 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence            9999999999999999999998664 5799999999999964 33444544 6777788899999999999999999999


Q ss_pred             HHHHHHHH
Q 027856          171 LTQIYRVV  178 (217)
Q Consensus       171 ~~~~~~~~  178 (217)
                      ++.+.+..
T Consensus       168 ~~~~~~~~  175 (219)
T PLN03071        168 ARKLAGDP  175 (219)
T ss_pred             HHHHHcCc
Confidence            98886543

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=2e-32  Score=204.99  Aligned_cols=162  Identities=25%  Similarity=0.467  Sum_probs=142.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+|+|++|+|||||+.+|..+.+...+.+|.+..+. ..+.+++..+.+.||||+|++.|..++..+++.+|++++||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf   80 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF   80 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence            79999999999999999999999999889898876654 56678899999999999999999999999999999999999


Q ss_pred             ECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCc------------cCCCHHHHHHHHHHcCC-cEEEEecCC
Q 027856           94 DVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRHL------------RAVSTEDATAFAERENT-FFMETSALE  159 (217)
Q Consensus        94 d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  159 (217)
                      |++++.+++.+ ..|...+.... ++.|+++|+||+|+.+.            ..++.++...+++..++ .|+++||++
T Consensus        81 dis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~  159 (222)
T cd04173          81 DISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS  159 (222)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence            99999999998 46777665543 58999999999999642            13678889999999996 799999999


Q ss_pred             CCC-HHHHHHHHHHHHHHH
Q 027856          160 SMN-VENAFTEVLTQIYRV  177 (217)
Q Consensus       160 ~~~-i~~~~~~i~~~~~~~  177 (217)
                      +.+ ++++|..++...+..
T Consensus       160 ~~~~V~~~F~~~~~~~~~~  178 (222)
T cd04173         160 SERSVRDVFHVATVASLGR  178 (222)
T ss_pred             CCcCHHHHHHHHHHHHHhc
Confidence            985 999999999987653

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=6e-32  Score=202.56  Aligned_cols=171  Identities=46%  Similarity=0.731  Sum_probs=147.8

Q ss_pred             CCCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcC
Q 027856            6 ADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG   85 (217)
Q Consensus         6 ~~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   85 (217)
                      +..+....+||+++|.+|+|||||+++|++..+. .+.++.+.++....+.+++..+.+.||||||++.+..++..+++.
T Consensus         7 ~~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~   85 (211)
T PLN03118          7 QSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRN   85 (211)
T ss_pred             cccccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhc
Confidence            3445667899999999999999999999998874 456788888877778888888899999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHH-HHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCH
Q 027856           86 AVGALLVYDVTRHVTFENVER-WLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNV  163 (217)
Q Consensus        86 ~d~ii~v~d~~~~~s~~~~~~-~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  163 (217)
                      +|++++|||++++.+++.+.. |...+.... ..+.|+++|+||+|+...+.+..++...++...++.|+++||++|.|+
T Consensus        86 ~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v  165 (211)
T PLN03118         86 AQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENV  165 (211)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence            999999999999999999865 666655432 246799999999999876677778888888888999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027856          164 ENAFTEVLTQIYRV  177 (217)
Q Consensus       164 ~~~~~~i~~~~~~~  177 (217)
                      +++|++|.+.+.+.
T Consensus       166 ~~l~~~l~~~~~~~  179 (211)
T PLN03118        166 EQCFEELALKIMEV  179 (211)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998765

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=2.2e-32  Score=196.96  Aligned_cols=163  Identities=63%  Similarity=0.968  Sum_probs=149.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|++|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999999988888888888888888888888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 027856           94 DVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  173 (217)
                      |++++.+++.+..|+..+......+.|+++|+||+|+.....+..+.+..++...+++++++|+.+|.|++++|++|.+.
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~  160 (164)
T smart00175       81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999887766689999999999997766777888888888889999999999999999999999988


Q ss_pred             HHH
Q 027856          174 IYR  176 (217)
Q Consensus       174 ~~~  176 (217)
                      +.+
T Consensus       161 ~~~  163 (164)
T smart00175      161 ILK  163 (164)
T ss_pred             Hhh
Confidence            764

Rab GTPases are implicated in vesicle trafficking.

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=2e-32  Score=201.50  Aligned_cols=165  Identities=32%  Similarity=0.545  Sum_probs=141.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCD-DKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      +||+|+|++|+|||||+++|.++.+...+.++.+.++.. .+... +..+.+.+|||||++.+..++..+++.+|++++|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            589999999999999999999999988887777666543 34444 6778999999999999999999999999999999


Q ss_pred             EECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCc----cCCCHHHHHHHHHHcCC-cEEEEecCCCCCHHHH
Q 027856           93 YDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHL----RAVSTEDATAFAERENT-FFMETSALESMNVENA  166 (217)
Q Consensus        93 ~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~  166 (217)
                      ||++++.|++.+. .|+..+.... .+.|+++|+||.|+...    +.+..+++.+++...+. .++++||++|.|+.++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  158 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV  158 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence            9999999999985 5888776543 57899999999998653    24567888889999887 8999999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 027856          167 FTEVLTQIYRVVSR  180 (217)
Q Consensus       167 ~~~i~~~~~~~~~~  180 (217)
                      |..+++.+......
T Consensus       159 f~~l~~~~~~~~~~  172 (187)
T cd04132         159 FDTAIEEALKKEGK  172 (187)
T ss_pred             HHHHHHHHHhhhhh
Confidence            99999998866643

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=1.1e-32  Score=200.67  Aligned_cols=160  Identities=29%  Similarity=0.484  Sum_probs=140.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|.+|+|||||+++|..+.+...+.+|.+..+. ..+.+++..+.+.+|||+|++++..++..+++++|++++|
T Consensus         1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv   79 (175)
T cd01874           1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   79 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence            379999999999999999999999998888888876554 3566788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCc------------cCCCHHHHHHHHHHcC-CcEEEEecC
Q 027856           93 YDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHL------------RAVSTEDATAFAEREN-TFFMETSAL  158 (217)
Q Consensus        93 ~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~  158 (217)
                      ||++++.+++.+. .|+..+.... ++.|+++|+||.|+.+.            +.+..++++++++..+ ..|+++||+
T Consensus        80 ~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~  158 (175)
T cd01874          80 FSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL  158 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence            9999999999986 5988887654 47999999999998653            4567788888888887 689999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 027856          159 ESMNVENAFTEVLTQI  174 (217)
Q Consensus       159 ~~~~i~~~~~~i~~~~  174 (217)
                      +|.|++++|+.+++.+
T Consensus       159 tg~~v~~~f~~~~~~~  174 (175)
T cd01874         159 TQKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998754

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=1.2e-32  Score=198.16  Aligned_cols=160  Identities=34%  Similarity=0.560  Sum_probs=140.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|.+|||||||++++..+.+...+.+|.+ +.....+.+++..+.+.+|||||++++..++..+++++|++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999988777777765 344556677888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 027856           94 DVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLT  172 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  172 (217)
                      |++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++...++..++.+++++||++|.|+.++|+++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04136          81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR  160 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence            99999999999999988876543 57899999999999776667777788888888889999999999999999999987


Q ss_pred             HH
Q 027856          173 QI  174 (217)
Q Consensus       173 ~~  174 (217)
                      .+
T Consensus       161 ~~  162 (163)
T cd04136         161 QI  162 (163)
T ss_pred             hc
Confidence            54

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=2.9e-32  Score=196.04  Aligned_cols=159  Identities=36%  Similarity=0.641  Sum_probs=143.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEEC--CeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCD--DKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      +||+++|.+|+|||||+++|+++.+...+.++.+.++....+.+.  +..+.+.+|||||++.+..++..+++.+|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            589999999999999999999999888888888888877777666  778899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 027856           92 VYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~  171 (217)
                      |||++++++++.+..|+..+.... .+.|+++|+||.|+.....+..+++..++...+++++++||++|.|++++|++|.
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA  159 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999999887544 4799999999999987777788888999999999999999999999999999987


Q ss_pred             HH
Q 027856          172 TQ  173 (217)
Q Consensus       172 ~~  173 (217)
                      ..
T Consensus       160 ~~  161 (162)
T cd04106         160 EK  161 (162)
T ss_pred             Hh
Confidence            54

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=5.3e-32  Score=196.22  Aligned_cols=162  Identities=35%  Similarity=0.612  Sum_probs=143.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEE
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d   94 (217)
                      ||+++|.+|||||||+++|+.+.+...+.+|.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            79999999999999999999999998999999988887888888888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccC--CCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 027856           95 VTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRA--VSTEDATAFAERENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        95 ~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~  171 (217)
                      ++++.+++.+..|+..+.... ....|+++|+||.|+.....  ...+++..++.+.+..++++||++|.|+.++|+.+.
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~  161 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA  161 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999876543 33578999999999965433  345566777888888999999999999999999999


Q ss_pred             HHHHH
Q 027856          172 TQIYR  176 (217)
Q Consensus       172 ~~~~~  176 (217)
                      +.+.+
T Consensus       162 ~~~~~  166 (170)
T cd04108         162 ALTFE  166 (170)
T ss_pred             HHHHH
Confidence            88754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=4.5e-32  Score=195.93  Aligned_cols=160  Identities=34%  Similarity=0.628  Sum_probs=141.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|++|||||||+++++.+.+...+.++.+.+.....+..++..+.+.+|||+|++.+..++..++..+|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999999888888888888888777777888899999999999999888899999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 027856           94 DVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  173 (217)
                      |++++.+++.+..|+..+..... +.|+++|+||+|+.+ ..+.. +..+++...++.++++||++|.|++++|+++++.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  157 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVKA-KQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCCH-HHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence            99999999999999999987764 899999999999974 33333 3455666777889999999999999999999988


Q ss_pred             HHH
Q 027856          174 IYR  176 (217)
Q Consensus       174 ~~~  176 (217)
                      +.+
T Consensus       158 ~~~  160 (166)
T cd00877         158 LLG  160 (166)
T ss_pred             HHh
Confidence            764

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=3.8e-32  Score=195.91  Aligned_cols=161  Identities=31%  Similarity=0.535  Sum_probs=141.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|.+|+|||||+++++.+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++++|++++||
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY   80 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence            6899999999999999999999888777777776544 356677888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 027856           94 DVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLT  172 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  172 (217)
                      |.+++.+++.+..|+..+.... ..+.|+++|+||+|+.....+..+++..+++..+.+++++||++|.|+.++|.++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  160 (164)
T cd04175          81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVR  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence            9999999999999988887643 357999999999999876667777788888888899999999999999999999987


Q ss_pred             HHH
Q 027856          173 QIY  175 (217)
Q Consensus       173 ~~~  175 (217)
                      .+.
T Consensus       161 ~l~  163 (164)
T cd04175         161 QIN  163 (164)
T ss_pred             Hhh
Confidence            653

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=6.6e-32  Score=194.00  Aligned_cols=160  Identities=39%  Similarity=0.755  Sum_probs=146.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++++|+
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999999998888888888888888888888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 027856           94 DVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  173 (217)
                      |++++.+++.+..|+..+......+.|+++++||+|+.+......++...++...++.++++||+++.|++++|+++.+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            99999999999999999877665579999999999997666778888888888888999999999999999999999864

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.8e-32  Score=181.87  Aligned_cols=179  Identities=49%  Similarity=0.848  Sum_probs=169.2

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      ....++-+++|+-|+|||.|+..|....|....+.+++.++-...+.+.+..+++++|||+|+++++...+.+++.+-+.
T Consensus         8 ysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaaga   87 (215)
T KOG0097|consen    8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   87 (215)
T ss_pred             hhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence            35678999999999999999999999999988889999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 027856           90 LLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTE  169 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  169 (217)
                      +.|||+..+.+++.+..|+...+....++..+++++||.|+...+.+..+++++|+.++|..++++||++|.|+++.|-.
T Consensus        88 lmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle  167 (215)
T KOG0097|consen   88 LMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLE  167 (215)
T ss_pred             eEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHH
Confidence            99999999999999999999999998889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhccCCC
Q 027856          170 VLTQIYRVVSRKALEIGDD  188 (217)
Q Consensus       170 i~~~~~~~~~~~~~~~~~~  188 (217)
                      ..+.++++....-+.+...
T Consensus       168 ~akkiyqniqdgsldlnaa  186 (215)
T KOG0097|consen  168 TAKKIYQNIQDGSLDLNAA  186 (215)
T ss_pred             HHHHHHHhhhcCcccccch
Confidence            9999999988877766654

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=1.2e-31  Score=193.12  Aligned_cols=162  Identities=51%  Similarity=0.849  Sum_probs=148.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|++|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+||+||++++...+..+++.+|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            37999999999999999999999998887778888888888888999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 027856           93 YDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLT  172 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  172 (217)
                      +|++++.+++.+..|+..+........|+++++||+|+........++...++...++.++++||++|.|+.++|+++++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK  160 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999998776668999999999999866677788888888888899999999999999999999998


Q ss_pred             HH
Q 027856          173 QI  174 (217)
Q Consensus       173 ~~  174 (217)
                      .+
T Consensus       161 ~l  162 (163)
T cd01860         161 KL  162 (163)
T ss_pred             Hh
Confidence            75

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=9.6e-32  Score=194.93  Aligned_cols=162  Identities=41%  Similarity=0.709  Sum_probs=144.5

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...+||+++|++|+|||||+++|+++.+...+.++.+.+.....+.+++..+.+.+||+||++.+..++..+++.+|+++
T Consensus         3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   82 (170)
T cd04116           3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL   82 (170)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence            35699999999999999999999999998888788888877778888999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcC-CcEEEEecCCCCCHHH
Q 027856           91 LVYDVTRHVTFENVERWLKELRDHTD----SNIVIMLVGNKADLRHLRAVSTEDATAFAEREN-TFFMETSALESMNVEN  165 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~  165 (217)
                      +|||++++.+++.+..|+..+.....    .+.|+++|+||.|+. .+.+..+++.+++...+ ..++++||++|.|+.+
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  161 (170)
T cd04116          83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAA  161 (170)
T ss_pred             EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHH
Confidence            99999999999999999988765432    468999999999997 35677888899988887 4799999999999999


Q ss_pred             HHHHHHHH
Q 027856          166 AFTEVLTQ  173 (217)
Q Consensus       166 ~~~~i~~~  173 (217)
                      +|+++++.
T Consensus       162 ~~~~~~~~  169 (170)
T cd04116         162 AFEEAVRR  169 (170)
T ss_pred             HHHHHHhh
Confidence            99999865

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=4.7e-32  Score=195.25  Aligned_cols=160  Identities=33%  Similarity=0.535  Sum_probs=140.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      ++|+++|.+|+|||||+++++.+.+...+.++.+ +.....+.+++..+.+.+|||||++.+..++..+++++|++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~   80 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence            7999999999999999999999998877767664 455567777888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 027856           94 DVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLT  172 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  172 (217)
                      |++++.+++.+..|+..+..... .+.|+++|+||+|+.....+...+...++...+.+++++||++|.|+.++|.++.+
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04176          81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVR  160 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHH
Confidence            99999999999999888876542 57999999999999766666777778888878889999999999999999999987


Q ss_pred             HH
Q 027856          173 QI  174 (217)
Q Consensus       173 ~~  174 (217)
                      .+
T Consensus       161 ~l  162 (163)
T cd04176         161 QM  162 (163)
T ss_pred             hc
Confidence            54

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=9.9e-32  Score=193.23  Aligned_cols=160  Identities=34%  Similarity=0.598  Sum_probs=139.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|.+|+|||||+++|+++.+.+.+.++.+.+.....+.+++..+.+.+|||+|++.+..++..+++.+|++++|+
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999988877777777777777778888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 027856           94 DVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  173 (217)
                      |++++.+++.+..|+..+.... .+.|+++|+||+|+...   ...+...++...+++++++||++|.|++++|+.+++.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  156 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL  156 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            9999999999999999987643 47899999999998431   1344556667778899999999999999999999988


Q ss_pred             HHHH
Q 027856          174 IYRV  177 (217)
Q Consensus       174 ~~~~  177 (217)
                      +.++
T Consensus       157 ~~~~  160 (161)
T cd04124         157 AVSY  160 (161)
T ss_pred             HHhc
Confidence            8765

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=7.7e-32  Score=194.56  Aligned_cols=158  Identities=35%  Similarity=0.521  Sum_probs=137.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|.+|+|||||+++++++.+...+.++.+..+ ...+..+...+.+.+|||+|++.+..++..++..+|++++||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999998777777765443 344556777889999999999999988889999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856           94 DVTRHVTFENVERWLKELRDHTD---SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  170 (217)
                      |++++.+++.+..|+..+.....   .+.|+++|+||+|+...+++..+++..++...++.++++||++|.|++++|++|
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l  160 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL  160 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence            99999999999998887766432   578999999999997766777778888888888899999999999999999999


Q ss_pred             HH
Q 027856          171 LT  172 (217)
Q Consensus       171 ~~  172 (217)
                      +.
T Consensus       161 ~~  162 (165)
T cd04140         161 LN  162 (165)
T ss_pred             Hh
Confidence            75

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=1.1e-31  Score=198.57  Aligned_cols=171  Identities=31%  Similarity=0.550  Sum_probs=145.8

Q ss_pred             EcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCCh
Q 027856           19 IGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH   98 (217)
Q Consensus        19 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~   98 (217)
                      +|.+|||||||+++|+.+.+...+.+|.+.++....+.+++..+.+.||||+|++.+..++..+++++|++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999988888889999888888888888899999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 027856           99 VTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVV  178 (217)
Q Consensus        99 ~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  178 (217)
                      .|++.+..|+..+.... .+.|+++|+||+|+.. +.+..+. ..++...++.|+++||++|.|+.++|+++++.+.+..
T Consensus        81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~~  157 (200)
T smart00176       81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP  157 (200)
T ss_pred             HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhcc
Confidence            99999999999998765 4899999999999865 3444443 4677778899999999999999999999999886542


Q ss_pred             hhhhhccCCCCCCCCCC
Q 027856          179 SRKALEIGDDPAALPKG  195 (217)
Q Consensus       179 ~~~~~~~~~~~~~~~~~  195 (217)
                         .+.....++..|++
T Consensus       158 ---~~~~~~~~~~~~~~  171 (200)
T smart00176      158 ---NLEFVAMPALAPPE  171 (200)
T ss_pred             ---cceeccCcccCCcc
Confidence               23334444444444

Ran is involved in the active transport of proteins through nuclear pores.

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=8.4e-32  Score=195.81  Aligned_cols=158  Identities=33%  Similarity=0.518  Sum_probs=138.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|.+|||||||+.+++.+.+...+.++.+. .....+.+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            79999999999999999999999998888788753 33445667888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCc------------cCCCHHHHHHHHHHcCC-cEEEEecCC
Q 027856           94 DVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHL------------RAVSTEDATAFAERENT-FFMETSALE  159 (217)
Q Consensus        94 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  159 (217)
                      |++++.|++.+. .|+..+.... ++.|+++|+||.|+.+.            +.+..+++..++.+.+. .++++||++
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  159 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT  159 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence            999999999985 6888876654 47999999999999542            24778889999999884 899999999


Q ss_pred             CCCHHHHHHHHHHH
Q 027856          160 SMNVENAFTEVLTQ  173 (217)
Q Consensus       160 ~~~i~~~~~~i~~~  173 (217)
                      |.|++++|+.+++.
T Consensus       160 ~~~i~~~f~~l~~~  173 (174)
T cd01871         160 QKGLKTVFDEAIRA  173 (174)
T ss_pred             cCCHHHHHHHHHHh
Confidence            99999999999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=1.9e-31  Score=193.47  Aligned_cols=162  Identities=39%  Similarity=0.700  Sum_probs=146.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhh-hhhhhhhcCCcEEEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYR-AITSAYYRGAVGALL   91 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~d~ii~   91 (217)
                      .++|+++|++|+|||||+++|+...+...+.++.+.++....+.+++..+.+.+|||+|++++. .++..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            4899999999999999999999999888888888888888888889988999999999999887 578889999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCC---CCCHHHHH
Q 027856           92 VYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALE---SMNVENAF  167 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~~  167 (217)
                      |||++++.+++.+..|+..+.... ..+.|+++|+||+|+...+.+..+++..++...+++|+++||++   +.++.++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f  161 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF  161 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence            999999999999999999887654 35799999999999987777888888889988889999999999   88999999


Q ss_pred             HHHHHHH
Q 027856          168 TEVLTQI  174 (217)
Q Consensus       168 ~~i~~~~  174 (217)
                      ..+++.+
T Consensus       162 ~~l~~~~  168 (170)
T cd04115         162 MTLAHKL  168 (170)
T ss_pred             HHHHHHh
Confidence            9998755

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=1.3e-31  Score=193.15  Aligned_cols=161  Identities=37%  Similarity=0.590  Sum_probs=140.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|++|||||||+++|.+..+...+.++.+.. ......+++..+.+.+|||||++++...+..+++.+|++++|+
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDS-YRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhh-EEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            489999999999999999999998887776766533 3455667888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 027856           94 DVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLT  172 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  172 (217)
                      |++++.+++.+..|+..+..... .+.|+++|+||+|+...+.+..+++..++...+.+++++||++|.|++++|+++++
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  159 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence            99999999999998888765433 47899999999999876667778888888888899999999999999999999997


Q ss_pred             HHH
Q 027856          173 QIY  175 (217)
Q Consensus       173 ~~~  175 (217)
                      .+.
T Consensus       160 ~~~  162 (164)
T smart00173      160 EIR  162 (164)
T ss_pred             HHh
Confidence            654

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=2e-31  Score=192.07  Aligned_cols=161  Identities=35%  Similarity=0.576  Sum_probs=140.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|.+|+|||||++++++..+...+.++.+..+ .....+++..+.+.+|||||++++..++..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            48999999999999999999999988777767665443 44456788888999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 027856           93 YDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~  171 (217)
                      ||++++.+++.+..|+..+.... ..+.|+++|+||+|+.....+..++..+++...+++++++||++|.|++++|++++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  160 (164)
T cd04145          81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV  160 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999988887653 35789999999999977666777778888888889999999999999999999998


Q ss_pred             HHH
Q 027856          172 TQI  174 (217)
Q Consensus       172 ~~~  174 (217)
                      +.+
T Consensus       161 ~~~  163 (164)
T cd04145         161 RVI  163 (164)
T ss_pred             Hhh
Confidence            764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=1.2e-31  Score=197.68  Aligned_cols=160  Identities=36%  Similarity=0.544  Sum_probs=138.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      .||+++|++|+|||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+..++..++..+|++++||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~   79 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF   79 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence            37999999999999999999999998888788766543 44566788899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCcc------------CCCHHHHHHHHHHcC-CcEEEEecCC
Q 027856           94 DVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHLR------------AVSTEDATAFAEREN-TFFMETSALE  159 (217)
Q Consensus        94 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~~  159 (217)
                      |++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.+            .+..++...++...+ +.|+++||++
T Consensus        80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  158 (189)
T cd04134          80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL  158 (189)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence            999999999886 5888887654 479999999999996543            345667777887776 6899999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 027856          160 SMNVENAFTEVLTQIY  175 (217)
Q Consensus       160 ~~~i~~~~~~i~~~~~  175 (217)
                      |.|++++|.++.+.+.
T Consensus       159 ~~~v~e~f~~l~~~~~  174 (189)
T cd04134         159 NRGVNEAFTEAARVAL  174 (189)
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999998886

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=3e-31  Score=190.58  Aligned_cols=159  Identities=33%  Similarity=0.546  Sum_probs=138.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|++|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++++||
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~   80 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   80 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence            6999999999999999999999998877777776443 455667888888999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 027856           94 DVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLT  172 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  172 (217)
                      |++++.+++.+..|+..+..... .+.|+++|+||+|+.. +.....++..++...+.+++++||++|.|++++|+++++
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (162)
T cd04138          81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVR  159 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence            99999999999888888876543 4789999999999976 455677788888888899999999999999999999986


Q ss_pred             HH
Q 027856          173 QI  174 (217)
Q Consensus       173 ~~  174 (217)
                      .+
T Consensus       160 ~~  161 (162)
T cd04138         160 EI  161 (162)
T ss_pred             Hh
Confidence            53

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=5.1e-31  Score=189.99  Aligned_cols=160  Identities=33%  Similarity=0.584  Sum_probs=140.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC--cCCCCCcccceeEeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRN--EFSLESKSTIGVEFATRSIRCD-DKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      +||+++|++|||||||+++|...  .+...+.++.+.++....+.++ +..+.+.+|||||++.+..++..++..+|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999865  6777888888888777777664 56789999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856           91 LVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  170 (217)
                      +|+|++++.+++.+..|+..+.... .+.|+++|+||+|+....++...++..+....++.++++||++|.|++++|+.+
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL  159 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence            9999999999999999999987764 478999999999997766677777777777788899999999999999999999


Q ss_pred             HHHH
Q 027856          171 LTQI  174 (217)
Q Consensus       171 ~~~~  174 (217)
                      .+.+
T Consensus       160 ~~~~  163 (164)
T cd04101         160 ARAF  163 (164)
T ss_pred             HHHh
Confidence            8764

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=2.3e-31  Score=197.04  Aligned_cols=165  Identities=21%  Similarity=0.290  Sum_probs=137.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhh--------hhhhhhhcC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYR--------AITSAYYRG   85 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~~~~   85 (217)
                      +||+|+|.+|||||||+++|+++.+...+.++.+.+.....+.+++..+.+.+|||||...+.        ......++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            589999999999999999999999988888888777666667788888999999999964331        123345789


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhc---CCCCcEEEEEeCCCCCCccCCCHHHHHHHHH-HcCCcEEEEecCCCC
Q 027856           86 AVGALLVYDVTRHVTFENVERWLKELRDHT---DSNIVIMLVGNKADLRHLRAVSTEDATAFAE-RENTFFMETSALESM  161 (217)
Q Consensus        86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~  161 (217)
                      +|++++|||++++.|++.+..|+..+....   ..++|+++|+||+|+...+.+..++...++. .++++|+++||++|.
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~  160 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW  160 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence            999999999999999999999998887654   3579999999999997766666777766654 568899999999999


Q ss_pred             CHHHHHHHHHHHHHHHH
Q 027856          162 NVENAFTEVLTQIYRVV  178 (217)
Q Consensus       162 ~i~~~~~~i~~~~~~~~  178 (217)
                      |+.++|+.+++.++.+-
T Consensus       161 ~v~~lf~~i~~~~~~~~  177 (198)
T cd04142         161 HILLLFKELLISATTRG  177 (198)
T ss_pred             CHHHHHHHHHHHhhccC
Confidence            99999999998887443

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04123 Rab21 Rab21 subfamily

Probab=100.00  E-value=6.8e-31  Score=188.71  Aligned_cols=161  Identities=40%  Similarity=0.697  Sum_probs=144.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|.+|+|||||+++|++..+...+.++.+.......+.+.+..+.+.+||+||++.+..++..+++.+|++++|+
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999999999887777677766776677777787889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 027856           94 DVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  173 (217)
                      |++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++.+++...+..++++|++++.|++++|+++.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~  160 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR  160 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999988776689999999999998766777788888888889999999999999999999999876


Q ss_pred             H
Q 027856          174 I  174 (217)
Q Consensus       174 ~  174 (217)
                      +
T Consensus       161 ~  161 (162)
T cd04123         161 M  161 (162)
T ss_pred             h
Confidence            4

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01862 Rab7 Rab7 subfamily

Probab=100.00  E-value=9e-31  Score=190.02  Aligned_cols=165  Identities=41%  Similarity=0.721  Sum_probs=145.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|++|+|||||++++.+..+...+.++.+.++....+.+.+..+.+.+||+||++.+..++..+++.+|+++++|
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988888888888887777888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcC-CcEEEEecCCCCCHHHHHH
Q 027856           94 DVTRHVTFENVERWLKELRDHTD----SNIVIMLVGNKADLRHLRAVSTEDATAFAEREN-TFFMETSALESMNVENAFT  168 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~  168 (217)
                      |++++.+++.+..|...+.....    .+.|+++|+||+|+..++....++...+....+ ..++++|+++|.|++++|+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  160 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE  160 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence            99999999888888877655442    378999999999998656667788888888877 7899999999999999999


Q ss_pred             HHHHHHHHHH
Q 027856          169 EVLTQIYRVV  178 (217)
Q Consensus       169 ~i~~~~~~~~  178 (217)
                      ++.+.+.+..
T Consensus       161 ~i~~~~~~~~  170 (172)
T cd01862         161 TIARKALEQE  170 (172)
T ss_pred             HHHHHHHhcc
Confidence            9999888763

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.7e-33  Score=187.96  Aligned_cols=197  Identities=37%  Similarity=0.661  Sum_probs=168.2

Q ss_pred             CCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEEC---------CeEEEEEEEeCCChhhhhh
Q 027856            7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCD---------DKIVKAQIWDTAGQERYRA   77 (217)
Q Consensus         7 ~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~Dt~G~~~~~~   77 (217)
                      +-+.+..|+.+.+|++|+|||+++.+++.+.|......|.|+++....+-++         +..+.+++|||+|++++++
T Consensus         3 ~GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRS   82 (219)
T KOG0081|consen    3 DGDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRS   82 (219)
T ss_pred             CccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHH
Confidence            4456778999999999999999999999999999999999999988887663         4468999999999999999


Q ss_pred             hhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEe
Q 027856           78 ITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETS  156 (217)
Q Consensus        78 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S  156 (217)
                      +..++++.+=++++++|+++..||-++.+|+..+..+.- .+..+++++||+|+.+.+.++.+++.+++++++++||++|
T Consensus        83 LTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETS  162 (219)
T KOG0081|consen   83 LTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETS  162 (219)
T ss_pred             HHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeec
Confidence            999999999999999999999999999999999976543 4667899999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceeeecccC
Q 027856          157 ALESMNVENAFTEVLTQIYRVVSRKALEIGDDPAALPKGQTINVGTKD  204 (217)
Q Consensus       157 a~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (217)
                      |-+|.|+++..+.++..++++..+. .+...-|-..-+++.-.+..++
T Consensus       163 A~tg~Nv~kave~LldlvM~Rie~~-v~~s~~p~~~~~~~~g~~~~e~  209 (219)
T KOG0081|consen  163 ACTGTNVEKAVELLLDLVMKRIEQC-VEKSEIPLLVTRSNCGHLDGEE  209 (219)
T ss_pred             cccCcCHHHHHHHHHHHHHHHHHHH-HhhcccchhhhccccccCCCCC
Confidence            9999999999999999988876654 2222333344444444444443

>cd04143 Rhes_like Rhes_like subfamily

Probab=100.00  E-value=8.4e-31  Score=199.71  Aligned_cols=160  Identities=24%  Similarity=0.427  Sum_probs=139.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|.+|+|||||+++|+++.+...+.+|.+ +.....+.+++..+.+.||||+|++.+..++..++..+|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999999887777775 455566778888899999999999999888888899999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhh---------cCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH-cCCcEEEEecCCCCCH
Q 027856           94 DVTRHVTFENVERWLKELRDH---------TDSNIVIMLVGNKADLRHLRAVSTEDATAFAER-ENTFFMETSALESMNV  163 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~---------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i  163 (217)
                      |++++.|++.+..|+..+...         ...+.|+++|+||+|+...+++..+++.+++.. .++.++++||++|.|+
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI  159 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL  159 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence            999999999999998888654         224789999999999986667788888877764 4678999999999999


Q ss_pred             HHHHHHHHHHH
Q 027856          164 ENAFTEVLTQI  174 (217)
Q Consensus       164 ~~~~~~i~~~~  174 (217)
                      +++|++|+..+
T Consensus       160 ~elf~~L~~~~  170 (247)
T cd04143         160 DEMFRALFSLA  170 (247)
T ss_pred             HHHHHHHHHHh
Confidence            99999999754

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd01873 RhoBTB RhoBTB subfamily

Probab=100.00  E-value=7.4e-31  Score=193.66  Aligned_cols=158  Identities=25%  Similarity=0.389  Sum_probs=129.8

Q ss_pred             eeEEEEEcCCCCCHHHHHH-HHhhCc-----CCCCCccccee-EeEEEE--------EEECCeEEEEEEEeCCChhhhhh
Q 027856           13 LFKVVLIGDSGVGKSNLLS-RFTRNE-----FSLESKSTIGV-EFATRS--------IRCDDKIVKAQIWDTAGQERYRA   77 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~l~Dt~G~~~~~~   77 (217)
                      .+||+++|++|+|||||+. ++.++.     +...+.+|.+. +.+...        ..+++..+.+.+|||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999995 665543     34556677642 322222        25688899999999999875  3


Q ss_pred             hhhhhhcCCcEEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCC-------------------ccCCC
Q 027856           78 ITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRH-------------------LRAVS  137 (217)
Q Consensus        78 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~-------------------~~~~~  137 (217)
                      ....+++++|++++|||++++.|++.+. .|+..+.... ++.|+++|+||+|+.+                   .+.++
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~  158 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP  158 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence            4556889999999999999999999996 5999887654 4789999999999864                   36788


Q ss_pred             HHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 027856          138 TEDATAFAERENTFFMETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  173 (217)
                      .++++++++.+++.|+++||++|.|++++|+.+++.
T Consensus       159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            999999999999999999999999999999999864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.98  E-value=7.5e-31  Score=190.92  Aligned_cols=158  Identities=34%  Similarity=0.558  Sum_probs=137.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEEC
Q 027856           16 VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDV   95 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~   95 (217)
                      |+|+|++|+|||||+++|.++.+...+.++....+ ...+.+++..+.+.+|||||++.+..++..+++.+|++++|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            68999999999999999999999887777765443 44566788889999999999999999999999999999999999


Q ss_pred             CChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCc------------cCCCHHHHHHHHHHcCC-cEEEEecCCCC
Q 027856           96 TRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHL------------RAVSTEDATAFAERENT-FFMETSALESM  161 (217)
Q Consensus        96 ~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  161 (217)
                      +++.|++.+. .|+..+.... ++.|+++|+||+|+...            ..++.+++.+++...+. .++++||++|.
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  158 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE  158 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            9999999985 5898887654 58999999999999652            23677888889999886 89999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 027856          162 NVENAFTEVLTQIY  175 (217)
Q Consensus       162 ~i~~~~~~i~~~~~  175 (217)
                      |++++|+.+++.+.
T Consensus       159 ~v~~lf~~l~~~~~  172 (174)
T smart00174      159 GVREVFEEAIRAAL  172 (174)
T ss_pred             CHHHHHHHHHHHhc
Confidence            99999999998775

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04114 Rab30 Rab30 subfamily

Probab=99.98  E-value=4.9e-30  Score=185.73  Aligned_cols=164  Identities=43%  Similarity=0.783  Sum_probs=146.1

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++|+++|++|+|||||++++..+.+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..++..+|+++
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   84 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI   84 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            45699999999999999999999988887777788888887778888888889999999999999998899999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856           91 LVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  170 (217)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+....+.+.....++++||++|.|+.++|++|
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i  164 (169)
T cd04114          85 LTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDL  164 (169)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHH
Confidence            99999999999999999998877766679999999999998766777776777777777889999999999999999999


Q ss_pred             HHHH
Q 027856          171 LTQI  174 (217)
Q Consensus       171 ~~~~  174 (217)
                      .+.+
T Consensus       165 ~~~~  168 (169)
T cd04114         165 ACRL  168 (169)
T ss_pred             HHHh
Confidence            8754

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01863 Rab18 Rab18 subfamily

Probab=99.98  E-value=2.3e-30  Score=185.99  Aligned_cols=159  Identities=52%  Similarity=0.863  Sum_probs=142.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999987777788888887777778888899999999999999998999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 027856           94 DVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLT  172 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  172 (217)
                      |++++.+++.+..|+..+.... ..+.|+++|+||+|+.. .....++..+++...+++++++|+++|.|++++|+.+++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~  159 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE  159 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence            9999999999988999887664 35799999999999974 456677888888888999999999999999999999986


Q ss_pred             H
Q 027856          173 Q  173 (217)
Q Consensus       173 ~  173 (217)
                      .
T Consensus       160 ~  160 (161)
T cd01863         160 K  160 (161)
T ss_pred             h
Confidence            5

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd01892 Miro2 Miro2 subfamily

Probab=99.98  E-value=9.7e-31  Score=189.43  Aligned_cols=162  Identities=21%  Similarity=0.213  Sum_probs=139.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCC-CCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ..+||+++|.+|+|||||+++|+++.+. ..+.+|.+.++....+.+++..+.+.+||++|++.+..++..++..+|+++
T Consensus         3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l   82 (169)
T cd01892           3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC   82 (169)
T ss_pred             eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence            5689999999999999999999999998 788888888877777778888889999999999999888899999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCc-EEEEecCCCCCHHHHHHH
Q 027856           91 LVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTE  169 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~  169 (217)
                      +|+|++++.+++.+..|+..+...  .+.|+++|+||+|+.+.......+..+++...++. ++++||++|.|++++|+.
T Consensus        83 lv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~  160 (169)
T cd01892          83 LVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTK  160 (169)
T ss_pred             EEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHH
Confidence            999999999999888888876432  37999999999999654444444566777777764 799999999999999999


Q ss_pred             HHHHHH
Q 027856          170 VLTQIY  175 (217)
Q Consensus       170 i~~~~~  175 (217)
                      +.+.+.
T Consensus       161 l~~~~~  166 (169)
T cd01892         161 LATAAQ  166 (169)
T ss_pred             HHHHhh
Confidence            998765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd00154 Rab Rab family

Probab=99.98  E-value=3.3e-30  Score=184.17  Aligned_cols=158  Identities=56%  Similarity=0.908  Sum_probs=145.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||+..+...+..+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999998888889898888888888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 027856           94 DVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~  171 (217)
                      |++++.+++.+..|+..+......+.|+++++||+|+........++...++...+..++++|++++.|+.++|++|.
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence            999999999999999999887656799999999999975566778888888888889999999999999999999986

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04177 RSR1 RSR1 subgroup

Probab=99.98  E-value=2.9e-30  Score=186.87  Aligned_cols=161  Identities=34%  Similarity=0.528  Sum_probs=141.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      ++|+++|.+|+|||||+++|.++.+...+.++.+.. ....+.+++..+.+.+|||||++.+..++..+++.++++++|+
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            689999999999999999999999877777776644 3566677888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcC-CcEEEEecCCCCCHHHHHHHHH
Q 027856           94 DVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAEREN-TFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~  171 (217)
                      |++++.+++.+..|...+.... ..+.|+++++||.|+.+.+.+..++...+++..+ ++++++||++|.|++++|++++
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~  160 (168)
T cd04177          81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV  160 (168)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence            9999999999999988887643 3579999999999998767777788888888887 7899999999999999999999


Q ss_pred             HHHH
Q 027856          172 TQIY  175 (217)
Q Consensus       172 ~~~~  175 (217)
                      ..+.
T Consensus       161 ~~~~  164 (168)
T cd04177         161 RQII  164 (168)
T ss_pred             HHHh
Confidence            8665

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04148 RGK RGK subfamily

Probab=99.98  E-value=2.6e-30  Score=194.57  Aligned_cols=165  Identities=29%  Similarity=0.363  Sum_probs=140.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCC-CCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhc-CCcEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYR-GAVGALL   91 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~-~~d~ii~   91 (217)
                      +||+++|++|+|||||+++|..+.+. ..+.++.+.+.....+.+++..+.+.+|||+|++.  .....++. .+|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence            58999999999999999999988876 66666665567777788888889999999999872  33445666 8999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856           92 VYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  170 (217)
                      |||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++..+++...++.++++||++|.|++++|+++
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l  158 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI  158 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            999999999999999998887654 2579999999999998777778888888888888999999999999999999999


Q ss_pred             HHHHHHHHhh
Q 027856          171 LTQIYRVVSR  180 (217)
Q Consensus       171 ~~~~~~~~~~  180 (217)
                      ++.+......
T Consensus       159 ~~~~~~~~~~  168 (221)
T cd04148         159 VRQIRLRRDS  168 (221)
T ss_pred             HHHHHhhhcc
Confidence            9888755444

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.97  E-value=1.3e-30  Score=188.08  Aligned_cols=160  Identities=35%  Similarity=0.526  Sum_probs=135.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhh-hhhhhhhhhcCCcEEEEEE
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER-YRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~ii~v~   93 (217)
                      +|+++|++|+|||||+++++.+.+...+.++....+ ...+.+++..+.+.+||+||++. .......+++.+|++++|+
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            589999999999999999999888766666654333 45566788888999999999875 3445677889999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCC-CCHHHHHHHH
Q 027856           94 DVTRHVTFENVERWLKELRDHT--DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALES-MNVENAFTEV  170 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~~i~~~~~~i  170 (217)
                      |++++.+++.+..|+..+....  ..+.|+++|+||+|+...+.+..+++..++...+.+|+++||++| .|++++|+.+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l  159 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL  159 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence            9999999999999998887654  357999999999999776777888888899888999999999999 5999999999


Q ss_pred             HHHHH
Q 027856          171 LTQIY  175 (217)
Q Consensus       171 ~~~~~  175 (217)
                      ++.+.
T Consensus       160 ~~~~~  164 (165)
T cd04146         160 CREVR  164 (165)
T ss_pred             HHHHh
Confidence            97654

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.97  E-value=2.5e-30  Score=185.08  Aligned_cols=153  Identities=21%  Similarity=0.363  Sum_probs=129.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|++|+|||||+.+++.+.+...+.++ +..+ ...+.+++..+.+.+|||+|++.     ..+++.+|++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            58999999999999999999998887766444 2233 46677888888999999999864     23568899999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCC--ccCCCHHHHHHHHHHc-CCcEEEEecCCCCCHHHHHHH
Q 027856           94 DVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRH--LRAVSTEDATAFAERE-NTFFMETSALESMNVENAFTE  169 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~  169 (217)
                      |++++.|++.+..|+..+..... .+.|+++|+||.|+..  .+.+..++++++++.. ++.|++|||++|.|++++|..
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~  153 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE  153 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence            99999999999999999987653 5789999999999853  4677888888888776 489999999999999999999


Q ss_pred             HHHH
Q 027856          170 VLTQ  173 (217)
Q Consensus       170 i~~~  173 (217)
                      +.+.
T Consensus       154 ~~~~  157 (158)
T cd04103         154 AAQK  157 (158)
T ss_pred             HHhh
Confidence            9864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.97  E-value=5.8e-30  Score=186.16  Aligned_cols=157  Identities=33%  Similarity=0.554  Sum_probs=136.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|++|+|||||++++.++.+...+.+|. .+.....+.+++..+.+.+|||||++.+..++..+++++|++++||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            589999999999999999999998888777765 4455556778888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCC------------ccCCCHHHHHHHHHHcCC-cEEEEecCC
Q 027856           94 DVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRH------------LRAVSTEDATAFAERENT-FFMETSALE  159 (217)
Q Consensus        94 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  159 (217)
                      |++++.+++.+. .|+..+.... .+.|+++|+||.|+..            .+.+..+++..+++..+. .++++||++
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~  158 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT  158 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence            999999999884 6888887543 4799999999999863            345677888899998887 799999999


Q ss_pred             CCCHHHHHHHHHH
Q 027856          160 SMNVENAFTEVLT  172 (217)
Q Consensus       160 ~~~i~~~~~~i~~  172 (217)
                      |.|++++|+.++.
T Consensus       159 ~~~v~~lf~~~~~  171 (173)
T cd04130         159 QKNLKEVFDTAIL  171 (173)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999998874

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04135 Tc10 TC10 subfamily

Probab=99.97  E-value=5.2e-30  Score=186.49  Aligned_cols=159  Identities=30%  Similarity=0.484  Sum_probs=136.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|++|+|||||+++|..+.+...+.++... .....+.+++..+.+.+|||||++.+...+..++..+|++++||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            58999999999999999999999987777666543 33446677888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCc------------cCCCHHHHHHHHHHcCC-cEEEEecCC
Q 027856           94 DVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHL------------RAVSTEDATAFAERENT-FFMETSALE  159 (217)
Q Consensus        94 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  159 (217)
                      |.+++.+++.+. .|+..+... ..+.|+++|+||+|+.+.            ..+..+++..+++..+. .++++||++
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  158 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT  158 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence            999999999885 688888765 568999999999998542            25667888888888885 699999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027856          160 SMNVENAFTEVLTQI  174 (217)
Q Consensus       160 ~~~i~~~~~~i~~~~  174 (217)
                      |.|++++|+.+++.+
T Consensus       159 ~~gi~~~f~~~~~~~  173 (174)
T cd04135         159 QKGLKTVFDEAILAI  173 (174)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999999865

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.97  E-value=6.1e-29  Score=178.94  Aligned_cols=161  Identities=36%  Similarity=0.541  Sum_probs=139.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|.+|+|||||+++++...+...+.++.+.. .......++..+.+.+||+||++.+...+..+++.++++++|+
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            589999999999999999999998877776665543 3445567888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 027856           94 DVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLT  172 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  172 (217)
                      |++++.++..+..|+..+.... ..+.|+++|+||+|+.........+...+...++++++++||++|.|+.++|+++.+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            9999999999988888887653 247999999999999765556677777888888899999999999999999999987


Q ss_pred             HHH
Q 027856          173 QIY  175 (217)
Q Consensus       173 ~~~  175 (217)
                      .+.
T Consensus       160 ~~~  162 (164)
T cd04139         160 EIR  162 (164)
T ss_pred             HHH
Confidence            765

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd00876 Ras Ras family

Probab=99.97  E-value=3.4e-29  Score=179.49  Aligned_cols=158  Identities=35%  Similarity=0.568  Sum_probs=140.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEE
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d   94 (217)
                      ||+++|++|||||||++++++..+...+.++.. +.....+..++..+.+.+||+||++.+...+..+++.+|++++|+|
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999999887777767665 5556666777777899999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 027856           95 VTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus        95 ~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  173 (217)
                      .+++++++.+..|+..+..... ...|+++|+||+|+........+++..++...+.+++++|++++.|++++|++|++.
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence            9999999999998888877654 589999999999998766777888888888888899999999999999999999875

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=1.9e-31  Score=176.67  Aligned_cols=162  Identities=44%  Similarity=0.720  Sum_probs=150.5

Q ss_pred             EEEcCCCCCHHHHHHHHhhCcCC-CCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEEC
Q 027856           17 VLIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDV   95 (217)
Q Consensus        17 ~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~   95 (217)
                      +++|++++|||.|+-|+..+-|. .....|.|+++....+..++..+++++|||+|++++++....+++.+|+++++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            36899999999999888877664 45678999999999999999999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027856           96 TRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus        96 ~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  175 (217)
                      .+..||++.+.|+.++.++....+.+.+++||+|+..++.+..++.+.++..+++++.++||++|-|++..|-.|.+.+.
T Consensus        81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~  160 (192)
T KOG0083|consen   81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK  160 (192)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence            99999999999999999988778889999999999988999999999999999999999999999999999999998887


Q ss_pred             HHH
Q 027856          176 RVV  178 (217)
Q Consensus       176 ~~~  178 (217)
                      +..
T Consensus       161 k~~  163 (192)
T KOG0083|consen  161 KLK  163 (192)
T ss_pred             Hhc
Confidence            553

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.97  E-value=9e-29  Score=181.39  Aligned_cols=165  Identities=20%  Similarity=0.340  Sum_probs=131.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEE-CCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRC-DDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      .++|+++|.+|||||||++++..+.+... .+|.+.+.....+.. ++..+.+.+|||||++.+...+..+++.+|++++
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF   81 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence            58999999999999999999998887654 466665555555543 4466899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH------cCCcEEEEecCCCCCHH
Q 027856           92 VYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAER------ENTFFMETSALESMNVE  164 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i~  164 (217)
                      |+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+  ....++...+...      .+.+++++||++|.|++
T Consensus        82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~  159 (183)
T cd04152          82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN--ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ  159 (183)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc--cCCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence            999999999888888887766543 24799999999999864  2344545444321      12458899999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 027856          165 NAFTEVLTQIYRVVSR  180 (217)
Q Consensus       165 ~~~~~i~~~~~~~~~~  180 (217)
                      ++|++|++.+.+.+..
T Consensus       160 ~l~~~l~~~l~~~~~~  175 (183)
T cd04152         160 EGLEKLYEMILKRRKM  175 (183)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999998766654

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04149 Arf6 Arf6 subfamily

Probab=99.97  E-value=5.3e-29  Score=180.14  Aligned_cols=154  Identities=19%  Similarity=0.362  Sum_probs=122.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..++|+++|.+|+|||||+++|..+.+.. +.+|.+.+..  .+..  ..+.+.+|||||++.+..++..++..+|++++
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~   82 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   82 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            45899999999999999999998877643 4566666543  2323  34789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH-----cCCcEEEEecCCCCCHHH
Q 027856           92 VYDVTRHVTFENVERWLKELRDH-TDSNIVIMLVGNKADLRHLRAVSTEDATAFAER-----ENTFFMETSALESMNVEN  165 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~  165 (217)
                      |||++++.+++.+..|+..+... ...+.|+++|+||+|+.+  ....+++.++...     ....++++||++|.|+.+
T Consensus        83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~  160 (168)
T cd04149          83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE  160 (168)
T ss_pred             EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence            99999999998887766665432 235789999999999865  3456666665432     234689999999999999


Q ss_pred             HHHHHHH
Q 027856          166 AFTEVLT  172 (217)
Q Consensus       166 ~~~~i~~  172 (217)
                      +|++|.+
T Consensus       161 ~~~~l~~  167 (168)
T cd04149         161 GLTWLSS  167 (168)
T ss_pred             HHHHHhc
Confidence            9999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.97  E-value=2.8e-28  Score=178.39  Aligned_cols=164  Identities=37%  Similarity=0.517  Sum_probs=139.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      .||+++|.+|+|||||+++|++..+...+.++.+... ...+.+++..+.+.+||+||++++...+..++..+++++++|
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            6899999999999999999999887766666654433 445566777789999999999999989999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 027856           94 DVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLT  172 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  172 (217)
                      |.++..+++.+..|+..+.... ..+.|+++|+||+|+...+.+..++...++...+.+++++||+++.|+.++|.++.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE  160 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            9999999999988877776643 357899999999999766666777777788888889999999999999999999998


Q ss_pred             HHHHHH
Q 027856          173 QIYRVV  178 (217)
Q Consensus       173 ~~~~~~  178 (217)
                      .+....
T Consensus       161 ~~~~~~  166 (180)
T cd04137         161 EIEKVE  166 (180)
T ss_pred             HHHHhc
Confidence            776443

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.97  E-value=2.6e-28  Score=177.73  Aligned_cols=159  Identities=30%  Similarity=0.502  Sum_probs=133.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      .||+++|++|||||||+++|.++.+...+.++.+... ...+.+++..+.+.+|||+|++.+...+..++.++|++++||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            5899999999999999999999998887877776544 345667888889999999999999988888899999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCc------------cCCCHHHHHHHHHHcCC-cEEEEecCC
Q 027856           94 DVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHL------------RAVSTEDATAFAERENT-FFMETSALE  159 (217)
Q Consensus        94 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  159 (217)
                      |++++.+++.+. .|+..+.... .+.|+++|+||.|+...            ..+...+.++++...+. .++++||++
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  159 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT  159 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence            999999998885 5888776543 47899999999998542            22445667777777764 699999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027856          160 SMNVENAFTEVLTQI  174 (217)
Q Consensus       160 ~~~i~~~~~~i~~~~  174 (217)
                      |.|++++|+++.+.+
T Consensus       160 ~~~v~~lf~~l~~~~  174 (175)
T cd01870         160 KEGVREVFEMATRAA  174 (175)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            999999999998754

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04129 Rho2 Rho2 subfamily

Probab=99.97  E-value=1.9e-28  Score=180.32  Aligned_cols=163  Identities=34%  Similarity=0.527  Sum_probs=136.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      .||+++|++|+|||||+++|..+.+...+.++....+ ...+.+++..+.+.+||++|++.+.......+..+|+++++|
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            5899999999999999999998888776666654443 345566788889999999999888877777889999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCC----------ccCCCHHHHHHHHHHcCC-cEEEEecCCCC
Q 027856           94 DVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRH----------LRAVSTEDATAFAERENT-FFMETSALESM  161 (217)
Q Consensus        94 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  161 (217)
                      |+++.++++.+. .|+..+.... ++.|+++|+||+|+.+          .+.+..++...++...+. .||++||++|.
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  159 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE  159 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence            999999999986 5999887655 4699999999999854          234556778888888885 79999999999


Q ss_pred             CHHHHHHHHHHHHHHHH
Q 027856          162 NVENAFTEVLTQIYRVV  178 (217)
Q Consensus       162 ~i~~~~~~i~~~~~~~~  178 (217)
                      |++++|+++.+.++..+
T Consensus       160 ~v~~~f~~l~~~~~~~~  176 (187)
T cd04129         160 GVDDVFEAATRAALLVR  176 (187)
T ss_pred             CHHHHHHHHHHHHhccc
Confidence            99999999998887544

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.97  E-value=1.6e-28  Score=182.20  Aligned_cols=160  Identities=32%  Similarity=0.448  Sum_probs=134.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEE
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d   94 (217)
                      ||+++|.+|+|||||+++|++..+...+.++.. +.....+.+.+..+.+.+||+||+..+..++..++..+|++++|||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            689999999999999999999998877766654 3445566778888899999999999998888889999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCC-ccCCCHHHHHHHHH-HcCCcEEEEecCCCCCHHHHHHHHH
Q 027856           95 VTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRH-LRAVSTEDATAFAE-RENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        95 ~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~i~  171 (217)
                      ++++.+++.+..|+..+..... .+.|+++|+||+|+.. ...+..++..+... ..+..++++||++|.|++++|++++
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  159 (198)
T cd04147          80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL  159 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999888877654 4799999999999965 34455555554443 4467899999999999999999999


Q ss_pred             HHHH
Q 027856          172 TQIY  175 (217)
Q Consensus       172 ~~~~  175 (217)
                      +.+.
T Consensus       160 ~~~~  163 (198)
T cd04147         160 RQAN  163 (198)
T ss_pred             HHhh
Confidence            8665

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.97  E-value=1.6e-28  Score=178.85  Aligned_cols=157  Identities=20%  Similarity=0.360  Sum_probs=122.1

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...+||+++|.+|+|||||+++|..+.+. .+.+|.+.+..  .+..  ..+.+.+|||||++.+..++..+++++|+++
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii   85 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLI   85 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence            34699999999999999999999877764 35567665543  3333  3478999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCccCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHH
Q 027856           91 LVYDVTRHVTFENVERWLKELRDH-TDSNIVIMLVGNKADLRHLRAVSTEDATAFAE-----RENTFFMETSALESMNVE  164 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~  164 (217)
                      +|+|++++.+++....|+..+... ...+.|+++|+||.|+.+.  ...+++.....     ...+.++++||++|.|+.
T Consensus        86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  163 (175)
T smart00177       86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA--MKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY  163 (175)
T ss_pred             EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--CCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence            999999999999887777766432 2247899999999998652  23334333322     123347789999999999


Q ss_pred             HHHHHHHHHH
Q 027856          165 NAFTEVLTQI  174 (217)
Q Consensus       165 ~~~~~i~~~~  174 (217)
                      ++|++|.+.+
T Consensus       164 e~~~~l~~~~  173 (175)
T smart00177      164 EGLTWLSNNL  173 (175)
T ss_pred             HHHHHHHHHh
Confidence            9999998764

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04158 ARD1 ARD1 subfamily

Probab=99.97  E-value=1.2e-28  Score=178.64  Aligned_cols=156  Identities=22%  Similarity=0.387  Sum_probs=126.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEE
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d   94 (217)
                      ||+++|.+|||||||+++|.+..+.. +.+|.+....  .+.+  ..+.+.+|||||++.+...+..+++.+|++++|+|
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            68999999999999999999987654 5566665543  3333  34789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcC------CcEEEEecCCCCCHHHHH
Q 027856           95 VTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAEREN------TFFMETSALESMNVENAF  167 (217)
Q Consensus        95 ~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~  167 (217)
                      .+++.++..+..|+..+.... ..+.|+++|+||.|+.+  .+..+++.+++...+      ..++++||++|.|+.++|
T Consensus        76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f  153 (169)
T cd04158          76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL  153 (169)
T ss_pred             CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence            999999999988888876432 24689999999999965  456676766654322      258899999999999999


Q ss_pred             HHHHHHHHHH
Q 027856          168 TEVLTQIYRV  177 (217)
Q Consensus       168 ~~i~~~~~~~  177 (217)
                      ++|.+.+.+.
T Consensus       154 ~~l~~~~~~~  163 (169)
T cd04158         154 DWLSRQLVAA  163 (169)
T ss_pred             HHHHHHHhhc
Confidence            9998876643

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=2.3e-28  Score=178.75  Aligned_cols=159  Identities=18%  Similarity=0.333  Sum_probs=123.4

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...+||+++|.+|||||||+++|..+.+. .+.+|.+.+..  .+..  ..+.+.+||+||++.+..++..+++++|++|
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI   89 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            34589999999999999999999987765 35577665543  3333  3478999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcC-----CcEEEEecCCCCCHH
Q 027856           91 LVYDVTRHVTFENVERWLKELRDH-TDSNIVIMLVGNKADLRHLRAVSTEDATAFAEREN-----TFFMETSALESMNVE  164 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~  164 (217)
                      +|||++++.+++.+..++..+... ...+.|+++++||.|+.+.  ...++.........     ..++++||++|+|+.
T Consensus        90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~  167 (181)
T PLN00223         90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence            999999999998887766665432 2247899999999998653  34444443332211     236689999999999


Q ss_pred             HHHHHHHHHHHH
Q 027856          165 NAFTEVLTQIYR  176 (217)
Q Consensus       165 ~~~~~i~~~~~~  176 (217)
                      ++|++|.+.+..
T Consensus       168 e~~~~l~~~~~~  179 (181)
T PLN00223        168 EGLDWLSNNIAN  179 (181)
T ss_pred             HHHHHHHHHHhh
Confidence            999999877653

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.96  E-value=2e-29  Score=181.66  Aligned_cols=153  Identities=18%  Similarity=0.307  Sum_probs=125.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEE
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d   94 (217)
                      .|+++|.+|+|||||+++|.+..+...+.+|.+...    ..+++..+.+.+||++|++.+...+..+++++|++++|||
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   76 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD   76 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence            489999999999999999999888777778877543    2334456899999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCH----HHHHHHHHHcCCcEEEEecCC------CCCHH
Q 027856           95 VTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVST----EDATAFAERENTFFMETSALE------SMNVE  164 (217)
Q Consensus        95 ~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~~i~  164 (217)
                      .+++.++..+..|+..+.... .++|+++|+||.|+...+.+..    .++..++...++.++++||++      ++|+.
T Consensus        77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~  155 (164)
T cd04162          77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK  155 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence            999999988888888876443 5899999999999976443221    223455556678899999998      99999


Q ss_pred             HHHHHHHH
Q 027856          165 NAFTEVLT  172 (217)
Q Consensus       165 ~~~~~i~~  172 (217)
                      ++|+.++.
T Consensus       156 ~~~~~~~~  163 (164)
T cd04162         156 DLLSQLIN  163 (164)
T ss_pred             HHHHHHhc
Confidence            99998864

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.96  E-value=1.9e-28  Score=175.69  Aligned_cols=152  Identities=19%  Similarity=0.375  Sum_probs=118.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|.+|||||||++++..+.+. .+.+|.+.+..  .+.+  ..+.+.+||+||++++...+..+++++|++++||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999887775 35677665543  2333  3478999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCccCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHHHHH
Q 027856           94 DVTRHVTFENVERWLKELRDH-TDSNIVIMLVGNKADLRHLRAVSTEDATAFAE-----RENTFFMETSALESMNVENAF  167 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~  167 (217)
                      |++++.+++.+..++..+... .....|+++++||.|+.+.  ...++......     ...+.++++||++|.|++++|
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~  153 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL  153 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence            999999999887766665432 2246899999999999652  23333322221     123457899999999999999


Q ss_pred             HHHHH
Q 027856          168 TEVLT  172 (217)
Q Consensus       168 ~~i~~  172 (217)
                      ++|.+
T Consensus       154 ~~l~~  158 (159)
T cd04150         154 DWLSN  158 (159)
T ss_pred             HHHhc
Confidence            99864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.96  E-value=7.9e-28  Score=177.85  Aligned_cols=147  Identities=24%  Similarity=0.420  Sum_probs=126.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEEC-----CeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCD-----DKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      +||+++|.+|+|||||+++|.++.+...+.+|.+.+.....+.++     +..+.+.+|||+|++.+..++..+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999999988888998887777766663     567899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhc-------------------CCCCcEEEEEeCCCCCCccCCCHHH----HHHHH
Q 027856           89 ALLVYDVTRHVTFENVERWLKELRDHT-------------------DSNIVIMLVGNKADLRHLRAVSTED----ATAFA  145 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~-------------------~~~~p~ivv~nK~D~~~~~~~~~~~----~~~~~  145 (217)
                      +|+|||++++.|++.+..|+..+....                   ....|+++|+||.|+.+++.++.+.    ...++
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia  160 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA  160 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence            999999999999999999999987532                   2468999999999997765555443    44667


Q ss_pred             HHcCCcEEEEecCCC
Q 027856          146 ERENTFFMETSALES  160 (217)
Q Consensus       146 ~~~~~~~~~~Sa~~~  160 (217)
                      +..+++.++.++.++
T Consensus       161 ~~~~~~~i~~~c~~~  175 (202)
T cd04102         161 EQGNAEEINLNCTNG  175 (202)
T ss_pred             HhcCCceEEEecCCc
Confidence            788999988888754

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.96  E-value=1.2e-27  Score=179.70  Aligned_cols=177  Identities=31%  Similarity=0.529  Sum_probs=149.5

Q ss_pred             CCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCC
Q 027856            7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGA   86 (217)
Q Consensus         7 ~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   86 (217)
                      ..+....+||+++|++|||||||+++++.+.+...+.+|.+.++....+..++..+.+.+|||+|++.+...+..++..+
T Consensus         3 ~~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~   82 (215)
T PTZ00132          3 QMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKG   82 (215)
T ss_pred             cccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccC
Confidence            34556679999999999999999999999888888889999888888887888889999999999999988899999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856           87 VGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA  166 (217)
Q Consensus        87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  166 (217)
                      +++++|||+++..++..+..|+..+.... .+.|+++++||+|+.+ .....+ ...++...++.++++|+++|.|++++
T Consensus        83 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~~  159 (215)
T PTZ00132         83 QCAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKD-RQVKAR-QITFHRKKNLQYYDISAKSNYNFEKP  159 (215)
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCcc-ccCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            99999999999999999999999887654 4789999999999865 233333 34566777888999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhccCCCC
Q 027856          167 FTEVLTQIYRVVSRKALEIGDDP  189 (217)
Q Consensus       167 ~~~i~~~~~~~~~~~~~~~~~~~  189 (217)
                      |.+|.+.+..   +....+.+.|
T Consensus       160 f~~ia~~l~~---~p~~~~ldEp  179 (215)
T PTZ00132        160 FLWLARRLTN---DPNLVFVGAP  179 (215)
T ss_pred             HHHHHHHHhh---cccceecCCc
Confidence            9999988764   3444454444

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.96  E-value=3.1e-28  Score=178.83  Aligned_cols=166  Identities=34%  Similarity=0.513  Sum_probs=152.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..++|+++|.+|+|||+|+.+|....|...|.+|.+ +.+...+.+++....+.|+||+|++++..+...++...|++++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            358999999999999999999999999999999987 6667777789999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856           92 VYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  170 (217)
                      ||+++++.||+.+..++..+..... ..+|+++|+||+|+...+.+..++.+.++..+++.|+++||+.+.+++++|..+
T Consensus        81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L  160 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL  160 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence            9999999999999999999855443 467999999999999989999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027856          171 LTQIYRVV  178 (217)
Q Consensus       171 ~~~~~~~~  178 (217)
                      ++.+...+
T Consensus       161 ~r~~~~~~  168 (196)
T KOG0395|consen  161 VREIRLPR  168 (196)
T ss_pred             HHHHHhhh
Confidence            98877633

>cd00157 Rho Rho (Ras homology) family

Probab=99.96  E-value=8.7e-28  Score=174.16  Aligned_cols=157  Identities=34%  Similarity=0.572  Sum_probs=131.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|.+|+|||||+++|++..+...+.++.. +.....+...+..+.+.+||+||++.+......+++.+|++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            5899999999999999999999998666656654 334455567788899999999999988888888889999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCcc-----------CCCHHHHHHHHHHcCC-cEEEEecCCC
Q 027856           94 DVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHLR-----------AVSTEDATAFAERENT-FFMETSALES  160 (217)
Q Consensus        94 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~  160 (217)
                      |++++.++.... .|+..+.... .+.|+++|+||+|+....           .+..++...++...+. .++++||++|
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  158 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ  158 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence            999999988764 5777776654 379999999999996543           2356677778888877 8999999999


Q ss_pred             CCHHHHHHHHHH
Q 027856          161 MNVENAFTEVLT  172 (217)
Q Consensus       161 ~~i~~~~~~i~~  172 (217)
                      .|+.++|++|++
T Consensus       159 ~gi~~l~~~i~~  170 (171)
T cd00157         159 EGVKEVFEEAIR  170 (171)
T ss_pred             CCHHHHHHHHhh
Confidence            999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.96  E-value=1e-27  Score=175.54  Aligned_cols=159  Identities=21%  Similarity=0.361  Sum_probs=122.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..+||+++|++|||||||++++..+.+.. +.+|.+.+..  .+..  ..+.+.+|||||++.+..++..+++.+|++|+
T Consensus        16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~   90 (182)
T PTZ00133         16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF   90 (182)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            35899999999999999999998777654 4567665543  3333  34789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH-----cCCcEEEEecCCCCCHHH
Q 027856           92 VYDVTRHVTFENVERWLKELRDH-TDSNIVIMLVGNKADLRHLRAVSTEDATAFAER-----ENTFFMETSALESMNVEN  165 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~  165 (217)
                      |+|++++.+++.+..++..+... ...+.|+++|+||.|+.+  ....+++......     ..+.++++||++|.|+.+
T Consensus        91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e  168 (182)
T PTZ00133         91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN--AMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYE  168 (182)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC--CCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHH
Confidence            99999999998887766655332 224689999999999864  2333333222211     123467899999999999


Q ss_pred             HHHHHHHHHHHH
Q 027856          166 AFTEVLTQIYRV  177 (217)
Q Consensus       166 ~~~~i~~~~~~~  177 (217)
                      +|++|.+.+.+.
T Consensus       169 ~~~~l~~~i~~~  180 (182)
T PTZ00133        169 GLDWLSANIKKS  180 (182)
T ss_pred             HHHHHHHHHHHh
Confidence            999999877643

>cd01893 Miro1 Miro1 subfamily

Probab=99.96  E-value=1.4e-27  Score=172.43  Aligned_cols=160  Identities=31%  Similarity=0.401  Sum_probs=124.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|.+|+|||||+++|.++.+...+..+.  ........+++..+.+.+|||||.+.+...+..++..+|++++||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL--PEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc--cceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            489999999999999999999998866543322  222344455677789999999999888777777889999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCccCCC--HHHHHHHHHHc-C-CcEEEEecCCCCCHHHHHH
Q 027856           94 DVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHLRAVS--TEDATAFAERE-N-TFFMETSALESMNVENAFT  168 (217)
Q Consensus        94 d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~-~-~~~~~~Sa~~~~~i~~~~~  168 (217)
                      |++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.....  .++........ + ..++++||++|.|++++|+
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  157 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence            999999999975 6888877654 489999999999997644321  22333333333 2 3699999999999999999


Q ss_pred             HHHHHHHH
Q 027856          169 EVLTQIYR  176 (217)
Q Consensus       169 ~i~~~~~~  176 (217)
                      .+.+.+.+
T Consensus       158 ~~~~~~~~  165 (166)
T cd01893         158 YAQKAVLH  165 (166)
T ss_pred             HHHHHhcC
Confidence            99887653

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04154 Arl2 Arl2 subfamily

Probab=99.96  E-value=1.1e-27  Score=174.09  Aligned_cols=156  Identities=19%  Similarity=0.355  Sum_probs=123.4

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      ....++|+++|++|+|||||+++|.+..+. .+.+|.+..  ...+.++  .+.+.+|||||++.+...+..++..+|++
T Consensus        11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~~--~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   85 (173)
T cd04154          11 KEREMRILILGLDNAGKTTILKKLLGEDID-TISPTLGFQ--IKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDAL   85 (173)
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccccc--eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence            345689999999999999999999988553 444665533  3344444  37899999999999998999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCccCCCHHHHHHHHH-----HcCCcEEEEecCCCCCH
Q 027856           90 LLVYDVTRHVTFENVERWLKELRDH-TDSNIVIMLVGNKADLRHLRAVSTEDATAFAE-----RENTFFMETSALESMNV  163 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i  163 (217)
                      ++|+|++++.++.....|+..+... ...+.|+++|+||+|+.+.  ...+++.....     ..+++++++||++|.|+
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  163 (173)
T cd04154          86 IWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA--LSEEEIREALELDKISSHHWRIQPCSAVTGEGL  163 (173)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC--CCHHHHHHHhCccccCCCceEEEeccCCCCcCH
Confidence            9999999999998887777776432 2357999999999999653  24555555543     23567999999999999


Q ss_pred             HHHHHHHHH
Q 027856          164 ENAFTEVLT  172 (217)
Q Consensus       164 ~~~~~~i~~  172 (217)
                      +++|++++.
T Consensus       164 ~~l~~~l~~  172 (173)
T cd04154         164 LQGIDWLVD  172 (173)
T ss_pred             HHHHHHHhc
Confidence            999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.96  E-value=2.3e-28  Score=175.88  Aligned_cols=164  Identities=35%  Similarity=0.547  Sum_probs=149.1

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCD-DKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      ...+|++|||+.++|||+|+-.+..+.|+..|.||.- +.+...+.++ +..+.+.+|||+|+++|..++...|.++|++
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf   80 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF   80 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence            3468999999999999999999999999999999985 7778888895 9999999999999999999888899999999


Q ss_pred             EEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCc------------cCCCHHHHHHHHHHcC-CcEEEE
Q 027856           90 LLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRHL------------RAVSTEDATAFAEREN-TFFMET  155 (217)
Q Consensus        90 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~  155 (217)
                      ++||++.++.|++++ ..|+.++...+ ++.|+++|++|.|+.+.            ..+..++....+.+.| ..|+++
T Consensus        81 l~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec  159 (198)
T KOG0393|consen   81 LLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC  159 (198)
T ss_pred             EEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence            999999999999997 56999999887 69999999999999742            3677888999999999 559999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHH
Q 027856          156 SALESMNVENAFTEVLTQIYR  176 (217)
Q Consensus       156 Sa~~~~~i~~~~~~i~~~~~~  176 (217)
                      ||++..|++++|+..++.+..
T Consensus       160 Sa~tq~~v~~vF~~a~~~~l~  180 (198)
T KOG0393|consen  160 SALTQKGVKEVFDEAIRAALR  180 (198)
T ss_pred             hhhhhCCcHHHHHHHHHHHhc
Confidence            999999999999999998874

>cd04157 Arl6 Arl6 subfamily

Probab=99.96  E-value=3.1e-27  Score=169.80  Aligned_cols=152  Identities=18%  Similarity=0.336  Sum_probs=117.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcC-CCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEF-SLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +|+++|++|||||||+++|.+..+ ...+.+|.+.....  +.  ...+.+.+|||||++.+..++..+++.+|++++|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--FE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--EE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            589999999999999999998763 44566776654322  22  23478999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhc---CCCCcEEEEEeCCCCCCccCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHHH
Q 027856           94 DVTRHVTFENVERWLKELRDHT---DSNIVIMLVGNKADLRHLRAVSTEDATAFAE-----RENTFFMETSALESMNVEN  165 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~  165 (217)
                      |++++.++..+..|+..+....   ..+.|+++|+||+|+.+..  ..++......     .....++++||++|.|+++
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~  154 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDE  154 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence            9999999888877777765432   2479999999999986532  2333322221     1123589999999999999


Q ss_pred             HHHHHHH
Q 027856          166 AFTEVLT  172 (217)
Q Consensus       166 ~~~~i~~  172 (217)
                      +|++|.+
T Consensus       155 ~~~~l~~  161 (162)
T cd04157         155 GVQWLQA  161 (162)
T ss_pred             HHHHHhc
Confidence            9999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.95  E-value=1.5e-26  Score=168.32  Aligned_cols=153  Identities=22%  Similarity=0.362  Sum_probs=119.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .++|+++|++|+|||||+++++.+.+.. +.++.+.+..  .+.++  .+.+.+||+||++.+...+..+++.+|++++|
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V   89 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILV   89 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence            5799999999999999999999887764 4466665543  33334  47899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHH-----HHcCCcEEEEecCCCCCHHHH
Q 027856           93 YDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFA-----ERENTFFMETSALESMNVENA  166 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~  166 (217)
                      +|++++.++.....++..+.... ..+.|+++++||+|+.+  ....++..+..     ...++.++++||++|.|++++
T Consensus        90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~--~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~  167 (174)
T cd04153          90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG--AMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEG  167 (174)
T ss_pred             EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC--CCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHH
Confidence            99999998887776666554332 24689999999999865  22344433222     123456999999999999999


Q ss_pred             HHHHHH
Q 027856          167 FTEVLT  172 (217)
Q Consensus       167 ~~~i~~  172 (217)
                      |++|.+
T Consensus       168 ~~~l~~  173 (174)
T cd04153         168 LDWIAS  173 (174)
T ss_pred             HHHHhc
Confidence            999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.95  E-value=3.4e-27  Score=170.56  Aligned_cols=151  Identities=23%  Similarity=0.362  Sum_probs=119.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEE
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d   94 (217)
                      +|+++|.+|||||||+++|.+. +...+.+|.+...  ..+...  .+.+.+||+||++.+...+..+++++|++++|||
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            4899999999999999999987 6666777777553  344443  4789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHH------HHHHHcC--CcEEEEecCCC-----
Q 027856           95 VTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDAT------AFAEREN--TFFMETSALES-----  160 (217)
Q Consensus        95 ~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~------~~~~~~~--~~~~~~Sa~~~-----  160 (217)
                      ++++.+++.+..|+..+..... .++|+++|+||.|+.+..  ...+..      .++.+.+  +.++++||++|     
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~--~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~  153 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL--LGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKI  153 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC--CHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcc
Confidence            9999999999888888765432 478999999999996633  222222      2222222  45788999998     


Q ss_pred             -CCHHHHHHHHHH
Q 027856          161 -MNVENAFTEVLT  172 (217)
Q Consensus       161 -~~i~~~~~~i~~  172 (217)
                       .|+.+.|+||..
T Consensus       154 ~~g~~~~~~wl~~  166 (167)
T cd04161         154 DPSIVEGLRWLLA  166 (167)
T ss_pred             ccCHHHHHHHHhc
Confidence             899999999974

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>PTZ00099 rab6; Provisional

Probab=99.95  E-value=4.4e-26  Score=165.58  Aligned_cols=142  Identities=36%  Similarity=0.683  Sum_probs=128.0

Q ss_pred             CcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhc
Q 027856           36 NEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHT  115 (217)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~  115 (217)
                      +.|...+.+|.+.++....+.+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+....
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            35667788999999988888889999999999999999999999999999999999999999999999999999887665


Q ss_pred             CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027856          116 DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRV  177 (217)
Q Consensus       116 ~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  177 (217)
                      ....|+++|+||+|+.+.+.+..+++..++..++..++++||++|.|+.++|++|.+.+.+.
T Consensus        83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~  144 (176)
T PTZ00099         83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNL  144 (176)
T ss_pred             CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            56789999999999977667788888888888888999999999999999999999888653

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.95  E-value=1.1e-26  Score=166.70  Aligned_cols=152  Identities=23%  Similarity=0.417  Sum_probs=117.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEE
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d   94 (217)
                      +|+++|++|+|||||+++|.+..+... .+|.+.+..  .+... ..+.+.+||+||++.+...+..++..+|++++|+|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~~--~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNVE--MLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcceE--EEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            589999999999999999999987543 466554432  33332 34789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHH------HHcCCcEEEEecCCCCCHHHHH
Q 027856           95 VTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFA------ERENTFFMETSALESMNVENAF  167 (217)
Q Consensus        95 ~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~i~~~~  167 (217)
                      ++++.++..+..|+..+.... ..+.|+++|+||+|+...  ...++.....      ...+..++++||++|.|++++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  154 (160)
T cd04156          77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF  154 (160)
T ss_pred             CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence            999998888877777765432 247999999999998542  2333333222      1133468999999999999999


Q ss_pred             HHHHH
Q 027856          168 TEVLT  172 (217)
Q Consensus       168 ~~i~~  172 (217)
                      ++|.+
T Consensus       155 ~~i~~  159 (160)
T cd04156         155 RKLAS  159 (160)
T ss_pred             HHHhc
Confidence            99864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.95  E-value=2e-26  Score=166.51  Aligned_cols=152  Identities=22%  Similarity=0.392  Sum_probs=117.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCC------CCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFS------LESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      +|+++|++|+|||||+++|.+....      ..+.++.+...  ..+.++  ...+.+|||||++.+...+..++..+|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            5899999999999999999875321      22334444443  334444  3689999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH-------cCCcEEEEecCCC
Q 027856           89 ALLVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAER-------ENTFFMETSALES  160 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~  160 (217)
                      +++|+|++++.++.....|+..+.... ..+.|+++++||+|+..  ....++...+...       .+.+++++||++|
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  154 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD--ALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG  154 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc--CCCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence            999999999988888877777765432 35799999999999865  3344555444332       2457999999999


Q ss_pred             CCHHHHHHHHHH
Q 027856          161 MNVENAFTEVLT  172 (217)
Q Consensus       161 ~~i~~~~~~i~~  172 (217)
                      .|++++|++|.+
T Consensus       155 ~gv~e~~~~l~~  166 (167)
T cd04160         155 TGVREGIEWLVE  166 (167)
T ss_pred             cCHHHHHHHHhc
Confidence            999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd00879 Sar1 Sar1 subfamily

Probab=99.95  E-value=4.4e-26  Score=168.15  Aligned_cols=155  Identities=20%  Similarity=0.301  Sum_probs=123.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..++|+++|++|||||||+++|.+..+. .+.++.+..  ...+.+++  +.+.+||+||+..+...+..+++.+|++++
T Consensus        18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil   92 (190)
T cd00879          18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF   92 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            4689999999999999999999988764 344555443  33444454  688999999999998888999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH----------------cCCcEEE
Q 027856           92 VYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAER----------------ENTFFME  154 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~~  154 (217)
                      |+|+++..++.....++..+.... ..+.|+++++||+|+..  .+..++.+.....                ....+++
T Consensus        93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (190)
T cd00879          93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFM  170 (190)
T ss_pred             EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEEE
Confidence            999999988887777777765433 24699999999999864  4556666665542                2245899


Q ss_pred             EecCCCCCHHHHHHHHHHH
Q 027856          155 TSALESMNVENAFTEVLTQ  173 (217)
Q Consensus       155 ~Sa~~~~~i~~~~~~i~~~  173 (217)
                      +||++|.|+.++|+++.+.
T Consensus       171 ~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         171 CSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             eEecCCCChHHHHHHHHhh
Confidence            9999999999999999865

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.95  E-value=2e-26  Score=165.02  Aligned_cols=151  Identities=21%  Similarity=0.383  Sum_probs=119.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEE
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d   94 (217)
                      ||+++|.+|||||||++++++... ..+.++.+....  .+.+.  .+.+.+||+||++.+...+..+++.+|++++|+|
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVE--TVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            689999999999999999999984 344556554443  33344  3689999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHHHHHH
Q 027856           95 VTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAE-----RENTFFMETSALESMNVENAFT  168 (217)
Q Consensus        95 ~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~  168 (217)
                      ++++.++.....|+..+.... ..+.|+++|+||+|+....  ..++..+...     ....+++++||++|.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~  153 (158)
T cd00878          76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence            999999988877777665532 3578999999999987633  3334433332     2345799999999999999999


Q ss_pred             HHHH
Q 027856          169 EVLT  172 (217)
Q Consensus       169 ~i~~  172 (217)
                      +|..
T Consensus       154 ~l~~  157 (158)
T cd00878         154 WLLQ  157 (158)
T ss_pred             HHhh
Confidence            9875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>PLN00023 GTP-binding protein; Provisional

Probab=99.95  E-value=9.1e-26  Score=174.72  Aligned_cols=143  Identities=24%  Similarity=0.462  Sum_probs=123.3

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEEC-------------CeEEEEEEEeCCChhhh
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCD-------------DKIVKAQIWDTAGQERY   75 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~Dt~G~~~~   75 (217)
                      +....+||+|+|..|||||||+++|.++.+...+.+|.+.++....+.++             +..+.+.||||+|++.+
T Consensus        17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf   96 (334)
T PLN00023         17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY   96 (334)
T ss_pred             CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence            45567999999999999999999999999988888999988877766664             24688999999999999


Q ss_pred             hhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcC------------CCCcEEEEEeCCCCCCcc---C---CC
Q 027856           76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD------------SNIVIMLVGNKADLRHLR---A---VS  137 (217)
Q Consensus        76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~------------~~~p~ivv~nK~D~~~~~---~---~~  137 (217)
                      ..++..++++++++|+|||++++.+++.+..|+..+.....            .++|++||+||+|+...+   .   +.
T Consensus        97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~  176 (334)
T PLN00023         97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNL  176 (334)
T ss_pred             hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccccc
Confidence            99999999999999999999999999999999999987531            258999999999996542   2   35


Q ss_pred             HHHHHHHHHHcCCc
Q 027856          138 TEDATAFAERENTF  151 (217)
Q Consensus       138 ~~~~~~~~~~~~~~  151 (217)
                      .+++++++..+++.
T Consensus       177 ~e~a~~~A~~~g~l  190 (334)
T PLN00023        177 VDAARQWVEKQGLL  190 (334)
T ss_pred             HHHHHHHHHHcCCC
Confidence            78899999987743

>cd04151 Arl1 Arl1 subfamily

Probab=99.95  E-value=8.3e-26  Score=161.89  Aligned_cols=151  Identities=21%  Similarity=0.348  Sum_probs=113.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEE
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d   94 (217)
                      ||+++|++|+|||||+++|..+.+.. +.++.+.+..  .+..  ..+.+.+|||||++.+...+..++..+|++++|+|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            68999999999999999998877643 3455554432  2333  34789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHH-HhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHHHHHH
Q 027856           95 VTRHVTFENVERWLKEL-RDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAE-----RENTFFMETSALESMNVENAFT  168 (217)
Q Consensus        95 ~~~~~s~~~~~~~~~~l-~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~  168 (217)
                      ++++.++.....++..+ ......+.|+++|+||+|+.+..  ...+......     ..+..++++||++|.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  153 (158)
T cd04151          76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence            99998877665555443 32222478999999999986532  2233322221     1234699999999999999999


Q ss_pred             HHHH
Q 027856          169 EVLT  172 (217)
Q Consensus       169 ~i~~  172 (217)
                      ++.+
T Consensus       154 ~l~~  157 (158)
T cd04151         154 WLVN  157 (158)
T ss_pred             HHhc
Confidence            9874

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.95  E-value=4.8e-28  Score=168.26  Aligned_cols=175  Identities=32%  Similarity=0.567  Sum_probs=164.2

Q ss_pred             CCCCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhc
Q 027856            5 RADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYR   84 (217)
Q Consensus         5 ~~~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   84 (217)
                      +.+.+.+..++++|+|..++||||+|++++.+-|...+..+++.++....+.+.+..+.+.+||++|++++..+..++++
T Consensus        12 m~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyr   91 (246)
T KOG4252|consen   12 MDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYR   91 (246)
T ss_pred             CCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhc
Confidence            44566788999999999999999999999999999999999999999999988888889999999999999999999999


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHH
Q 027856           85 GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVE  164 (217)
Q Consensus        85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  164 (217)
                      ++.+.++||+.+++.||+....|++.+..... .+|.++|-||+|+.+...+...+.+..++.+...++-+|++...|+.
T Consensus        92 gaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~-~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~  170 (246)
T KOG4252|consen   92 GAQASVLVFSTTDRYSFEATLEWYNKVQKETE-RIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVM  170 (246)
T ss_pred             cccceEEEEecccHHHHHHHHHHHHHHHHHhc-cCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhH
Confidence            99999999999999999999999999987764 89999999999999989999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 027856          165 NAFTEVLTQIYRVVSR  180 (217)
Q Consensus       165 ~~~~~i~~~~~~~~~~  180 (217)
                      .+|..+++.+.+...+
T Consensus       171 ~vF~YLaeK~~q~~kq  186 (246)
T KOG4252|consen  171 HVFAYLAEKLTQQKKQ  186 (246)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999998887665

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.94  E-value=1e-25  Score=165.35  Aligned_cols=156  Identities=17%  Similarity=0.261  Sum_probs=121.1

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++|+++|.+|+|||||+++|.+..+.. +.+|.+..  ...+.+.+  +.+.+||+||+..+...+..++.++|+++
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii   89 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPT--SEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIV   89 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            345899999999999999999999887643 33444432  23333443  68899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH------------cCCcEEEEec
Q 027856           91 LVYDVTRHVTFENVERWLKELRDH-TDSNIVIMLVGNKADLRHLRAVSTEDATAFAER------------ENTFFMETSA  157 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa  157 (217)
                      +|+|++++.++.....++..+... ...+.|+++|+||.|+..  .++.+++.+....            ....++++||
T Consensus        90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa  167 (184)
T smart00178       90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV  167 (184)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence            999999999888877776666442 224789999999999864  4556666544321            1234999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 027856          158 LESMNVENAFTEVLTQ  173 (217)
Q Consensus       158 ~~~~~i~~~~~~i~~~  173 (217)
                      ++|.|++++++||..+
T Consensus       168 ~~~~g~~~~~~wl~~~  183 (184)
T smart00178      168 VRRMGYGEGFKWLSQY  183 (184)
T ss_pred             ccCCChHHHHHHHHhh
Confidence            9999999999999864

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.94  E-value=1.1e-25  Score=163.71  Aligned_cols=157  Identities=28%  Similarity=0.454  Sum_probs=125.6

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++|+++|..|||||||++++..+.... ..||.+.+  ...+.+.+  +.+.+||.+|+..++..|..++.++|++|
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~--~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI   86 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFN--IEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII   86 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEE--EEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccc--cceeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence            678999999999999999999999776543 44666644  44455555  68899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH------cCCcEEEEecCCCCCH
Q 027856           91 LVYDVTRHVTFENVERWLKELRDH-TDSNIVIMLVGNKADLRHLRAVSTEDATAFAER------ENTFFMETSALESMNV  163 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i  163 (217)
                      ||+|.++...+.+....+..+... ...++|++|++||.|+.+  .+..+++......      ..+.++.+||.+|+|+
T Consensus        87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv  164 (175)
T PF00025_consen   87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGV  164 (175)
T ss_dssp             EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTH
T ss_pred             EEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeeeccCCcCH
Confidence            999999998888776655555442 235899999999999865  4566666655432      2344899999999999


Q ss_pred             HHHHHHHHHHH
Q 027856          164 ENAFTEVLTQI  174 (217)
Q Consensus       164 ~~~~~~i~~~~  174 (217)
                      .+.|+||.+.+
T Consensus       165 ~e~l~WL~~~~  175 (175)
T PF00025_consen  165 DEGLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcC
Confidence            99999999764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd01890 LepA LepA subfamily

Probab=99.94  E-value=2.2e-25  Score=162.87  Aligned_cols=154  Identities=21%  Similarity=0.259  Sum_probs=112.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc-------CCCCCcc------cceeEeEEEEE--EE---CCeEEEEEEEeCCChhhhh
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE-------FSLESKS------TIGVEFATRSI--RC---DDKIVKAQIWDTAGQERYR   76 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~-------~~~~~~~------~~~~~~~~~~~--~~---~~~~~~~~l~Dt~G~~~~~   76 (217)
                      +|+++|++++|||||+++|++..       +...+.+      +.+.+......  .+   ++..+.+.+|||||++.+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            69999999999999999999742       1112212      12233333222  22   5667899999999999999


Q ss_pred             hhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCC---cEE
Q 027856           77 AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENT---FFM  153 (217)
Q Consensus        77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~  153 (217)
                      ..+..++..+|++++|+|+++..+.+....|.....    .++|+++|+||+|+.+..  ..+...+++...++   .++
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~----~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~  155 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE----NNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI  155 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH----cCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence            999999999999999999998776666655544332    378999999999986422  12223445555555   389


Q ss_pred             EEecCCCCCHHHHHHHHHHHH
Q 027856          154 ETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       154 ~~Sa~~~~~i~~~~~~i~~~~  174 (217)
                      ++||++|.|++++|+++.+.+
T Consensus       156 ~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         156 LVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             EeeccCCCCHHHHHHHHHhhC
Confidence            999999999999999998654

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.94  E-value=2.1e-25  Score=161.23  Aligned_cols=156  Identities=20%  Similarity=0.232  Sum_probs=108.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhh---------hhhhhhhc
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYR---------AITSAYYR   84 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~~~~   84 (217)
                      .+|+++|.+|+|||||+++|++..+.....+..+.+........  ..+.+.+|||||.....         ........
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   78 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH   78 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence            47999999999999999999998765332222222233323322  34789999999963210         11111223


Q ss_pred             CCcEEEEEEECCChhh--HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCC
Q 027856           85 GAVGALLVYDVTRHVT--FENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMN  162 (217)
Q Consensus        85 ~~d~ii~v~d~~~~~s--~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  162 (217)
                      ..|++++|+|+++..+  ++....|+..+.... .+.|+++|+||+|+.+...+.  +...+....+.+++++||++|.|
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~g  155 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLS--EIEEEEELEGEEVLKISTLTEEG  155 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHH--HHHHhhhhccCceEEEEecccCC
Confidence            4689999999998754  355566777776543 479999999999997643322  24455555567899999999999


Q ss_pred             HHHHHHHHHHHH
Q 027856          163 VENAFTEVLTQI  174 (217)
Q Consensus       163 i~~~~~~i~~~~  174 (217)
                      ++++|+++.+.+
T Consensus       156 i~~l~~~l~~~~  167 (168)
T cd01897         156 VDEVKNKACELL  167 (168)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998875

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.94  E-value=7.8e-25  Score=173.09  Aligned_cols=164  Identities=18%  Similarity=0.098  Sum_probs=123.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhh-------hhhhhhhhhcC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER-------YRAITSAYYRG   85 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~   85 (217)
                      ...|+++|.||||||||+++|++........+.++.......+.+.+. ..+.+||+||..+       +...+...+..
T Consensus       158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~-~~~~i~D~PGli~ga~~~~gLg~~flrhie~  236 (335)
T PRK12299        158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDY-KSFVIADIPGLIEGASEGAGLGHRFLKHIER  236 (335)
T ss_pred             cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCC-cEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence            567999999999999999999987644333344455565666655322 4689999999532       22233345567


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCH
Q 027856           86 AVGALLVYDVTRHVTFENVERWLKELRDHTD--SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNV  163 (217)
Q Consensus        86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  163 (217)
                      ++++++|+|+++..+++.+..|..++..+..  .++|+++|+||+|+........++...++...+..++++||++++|+
T Consensus       237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI  316 (335)
T PRK12299        237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL  316 (335)
T ss_pred             cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence            9999999999988888888899999877643  37899999999999764433333445555556678999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027856          164 ENAFTEVLTQIYRV  177 (217)
Q Consensus       164 ~~~~~~i~~~~~~~  177 (217)
                      +++|++|.+.+.+.
T Consensus       317 ~eL~~~L~~~l~~~  330 (335)
T PRK12299        317 DELLRALWELLEEA  330 (335)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999877653

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.93  E-value=1.4e-24  Score=154.98  Aligned_cols=151  Identities=23%  Similarity=0.409  Sum_probs=119.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEEC
Q 027856           16 VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDV   95 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~   95 (217)
                      |+++|++|+|||||+++|.+..+...+.++.+.+...  +...+  +.+.+||+||++.+...+..++..+|++++|+|+
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~   77 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA   77 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence            7999999999999999999999888887877766543  33333  7899999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCccCCCHHHHHHHH-----HHcCCcEEEEecCCCCCHHHHHHH
Q 027856           96 TRHVTFENVERWLKELRDH-TDSNIVIMLVGNKADLRHLRAVSTEDATAFA-----ERENTFFMETSALESMNVENAFTE  169 (217)
Q Consensus        96 ~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~  169 (217)
                      ++..++.....++..+... ...++|+++|+||.|+.+..  ...+.....     ......++++|+++|.|++++|++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  155 (159)
T cd04159          78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL--SVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDW  155 (159)
T ss_pred             CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc--CHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHH
Confidence            9998888776666665432 22478999999999986532  222222221     112356899999999999999999


Q ss_pred             HHH
Q 027856          170 VLT  172 (217)
Q Consensus       170 i~~  172 (217)
                      |.+
T Consensus       156 l~~  158 (159)
T cd04159         156 LIK  158 (159)
T ss_pred             Hhh
Confidence            875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01898 Obg Obg subfamily

Probab=99.93  E-value=3.6e-25  Score=160.28  Aligned_cols=157  Identities=18%  Similarity=0.123  Sum_probs=111.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChh----hhhhhhhh---hhcCCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE----RYRAITSA---YYRGAV   87 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----~~~~~~~~---~~~~~d   87 (217)
                      +|+++|.+|+|||||+++|.+........+..+.......+.+.+. ..+.+|||||..    ....+...   .+..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            6899999999999999999986543222122222333333333332 488999999953    21122222   245699


Q ss_pred             EEEEEEECCCh-hhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCccCCCHHHHHHHHHH-cCCcEEEEecCCCCCH
Q 027856           88 GALLVYDVTRH-VTFENVERWLKELRDHTD--SNIVIMLVGNKADLRHLRAVSTEDATAFAER-ENTFFMETSALESMNV  163 (217)
Q Consensus        88 ~ii~v~d~~~~-~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i  163 (217)
                      ++++|+|++++ .+++.+..|.+.+.....  .++|+++|+||+|+...... .+....+... .+.+++++||+++.|+
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi  159 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL  159 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence            99999999999 788888889888876542  36899999999998664332 3334445555 3678999999999999


Q ss_pred             HHHHHHHHHH
Q 027856          164 ENAFTEVLTQ  173 (217)
Q Consensus       164 ~~~~~~i~~~  173 (217)
                      +++|+++.+.
T Consensus       160 ~~l~~~i~~~  169 (170)
T cd01898         160 DELLRKLAEL  169 (170)
T ss_pred             HHHHHHHHhh
Confidence            9999999864

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.93  E-value=5.1e-24  Score=160.53  Aligned_cols=169  Identities=40%  Similarity=0.597  Sum_probs=139.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .++|+++|++|+|||||+++|.++.+...+.++.+...........+..+++.+|||+|+++++.++..++.+++++++|
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~   84 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV   84 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            38999999999999999999999999999988888777777776666578999999999999999999999999999999


Q ss_pred             EECCC-hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCcc------------CCCHHHHHHHHHHc---CCcEEEEe
Q 027856           93 YDVTR-HVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLR------------AVSTEDATAFAERE---NTFFMETS  156 (217)
Q Consensus        93 ~d~~~-~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~---~~~~~~~S  156 (217)
                      +|..+ ..+.+....|...+........|+++++||+|+....            ..............   ...++++|
T Consensus        85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  164 (219)
T COG1100          85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS  164 (219)
T ss_pred             EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence            99999 4455556789999988776679999999999997653            22333333332222   33399999


Q ss_pred             cC--CCCCHHHHHHHHHHHHHHHHhhh
Q 027856          157 AL--ESMNVENAFTEVLTQIYRVVSRK  181 (217)
Q Consensus       157 a~--~~~~i~~~~~~i~~~~~~~~~~~  181 (217)
                      +.  .+.++.++|..++..+.+.....
T Consensus       165 ~~~~~~~~v~~~~~~~~~~~~~~~~~~  191 (219)
T COG1100         165 AKSLTGPNVNELFKELLRKLLEEIEKL  191 (219)
T ss_pred             cccCCCcCHHHHHHHHHHHHHHhhhhh
Confidence            99  99999999999999998765443

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.93  E-value=3.3e-24  Score=147.07  Aligned_cols=161  Identities=17%  Similarity=0.341  Sum_probs=128.4

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      .+..++|.++|..|+||||++++|.+... ....||.+.+.  .++.+++  +.+++||..|+..+++.|.+||..+|++
T Consensus        13 kerE~riLiLGLdNsGKTti~~kl~~~~~-~~i~pt~gf~I--ktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdgl   87 (185)
T KOG0073|consen   13 KEREVRILILGLDNSGKTTIVKKLLGEDT-DTISPTLGFQI--KTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGL   87 (185)
T ss_pred             hhheeEEEEEecCCCCchhHHHHhcCCCc-cccCCccceee--EEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence            34579999999999999999999999884 44447777554  4443444  7999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHH-hhcCCCCcEEEEEeCCCCCCccCCCHHHH------HHHHHHcCCcEEEEecCCCCC
Q 027856           90 LLVYDVTRHVTFENVERWLKELR-DHTDSNIVIMLVGNKADLRHLRAVSTEDA------TAFAERENTFFMETSALESMN  162 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~-~~~~~~~p~ivv~nK~D~~~~~~~~~~~~------~~~~~~~~~~~~~~Sa~~~~~  162 (217)
                      |+|+|.+++..+++....+..+. ...-.+.|+++++||.|+..  ..+.+++      ++++.....+++-||+.+|++
T Consensus        88 IwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~--~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~  165 (185)
T KOG0073|consen   88 IWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG--ALSLEEISKALDLEELAKSHHWRLVKCSAVTGED  165 (185)
T ss_pred             EEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc--ccCHHHHHHhhCHHHhccccCceEEEEecccccc
Confidence            99999999988887755444443 22234789999999999973  2333333      344455678899999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 027856          163 VENAFTEVLTQIYRV  177 (217)
Q Consensus       163 i~~~~~~i~~~~~~~  177 (217)
                      +.+-++|+++.+.++
T Consensus       166 l~~gidWL~~~l~~r  180 (185)
T KOG0073|consen  166 LLEGIDWLCDDLMSR  180 (185)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998874

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.93  E-value=2.6e-24  Score=153.37  Aligned_cols=158  Identities=39%  Similarity=0.540  Sum_probs=127.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|.+|+|||||++++++..+...+.++.+.+.....+..++..+.+.+||+||+..+...+..++..++.++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            37999999999999999999999997777777888877777677777778899999999999988888889999999999


Q ss_pred             EECCCh-hhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856           93 YDVTRH-VTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        93 ~d~~~~-~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  170 (217)
                      +|.... .++.... .|...+......+.|+++++||+|+.... ........+......+++++||.+|.|+.++|++|
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l  159 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV  159 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence            998877 6666554 56666665554488999999999996633 22333333344445679999999999999999986


Q ss_pred             H
Q 027856          171 L  171 (217)
Q Consensus       171 ~  171 (217)
                      -
T Consensus       160 ~  160 (161)
T TIGR00231       160 E  160 (161)
T ss_pred             h
Confidence            3

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01878 HflX HflX subfamily

Probab=99.93  E-value=8.8e-25  Score=162.96  Aligned_cols=156  Identities=23%  Similarity=0.194  Sum_probs=114.8

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhh---------hhhhhhh
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER---------YRAITSA   81 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~   81 (217)
                      ...++|+++|++|||||||++++++..+.....+..+.+.....+.+.+. ..+.+|||||...         +.... .
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~  116 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E  116 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence            44589999999999999999999998754433333334444444444443 3789999999621         22221 2


Q ss_pred             hhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCC
Q 027856           82 YYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESM  161 (217)
Q Consensus        82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  161 (217)
                      .+..+|++++|+|++++.+......|...+......+.|+++|+||+|+......     .......+.+++++||+++.
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~Sa~~~~  191 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL-----EERLEAGRPDAVFISAKTGE  191 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH-----HHHhhcCCCceEEEEcCCCC
Confidence            3678999999999999888877777777776655457899999999998653221     13344556789999999999


Q ss_pred             CHHHHHHHHHHH
Q 027856          162 NVENAFTEVLTQ  173 (217)
Q Consensus       162 ~i~~~~~~i~~~  173 (217)
                      |+.++|++|.++
T Consensus       192 gi~~l~~~L~~~  203 (204)
T cd01878         192 GLDELLEAIEEL  203 (204)
T ss_pred             CHHHHHHHHHhh
Confidence            999999999865

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd04155 Arl3 Arl3 subfamily

Probab=99.93  E-value=2e-24  Score=156.95  Aligned_cols=159  Identities=18%  Similarity=0.288  Sum_probs=118.0

Q ss_pred             CCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCC
Q 027856            7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGA   86 (217)
Q Consensus         7 ~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   86 (217)
                      ..+....++|+++|++|+|||||++++.+..+.. +.++.+.+..  .+...+  ..+.+||+||+..+...+..++..+
T Consensus         8 ~~~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~~--~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~   82 (173)
T cd04155           8 LRKSSEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNIK--TVQSDG--FKLNVWDIGGQRAIRPYWRNYFENT   82 (173)
T ss_pred             hhccCCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcceE--EEEECC--EEEEEEECCCCHHHHHHHHHHhcCC
Confidence            3344558999999999999999999999986643 3455554432  333444  6889999999988888888899999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcC-----CcEEEEecCCC
Q 027856           87 VGALLVYDVTRHVTFENVERWLKELRDH-TDSNIVIMLVGNKADLRHLRAVSTEDATAFAEREN-----TFFMETSALES  160 (217)
Q Consensus        87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~  160 (217)
                      |++++|+|+++..++.....++..+... ...++|+++++||+|+.+..  ..++..+......     ..++++||++|
T Consensus        83 ~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~  160 (173)
T cd04155          83 DCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAEEIAEALNLHDLRDRTWHIQACSAKTG  160 (173)
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHHHHHHHcCCcccCCCeEEEEEeECCCC
Confidence            9999999999988887776665555432 23479999999999986522  2232322221111     23789999999


Q ss_pred             CCHHHHHHHHHH
Q 027856          161 MNVENAFTEVLT  172 (217)
Q Consensus       161 ~~i~~~~~~i~~  172 (217)
                      .|++++|+||.+
T Consensus       161 ~gi~~~~~~l~~  172 (173)
T cd04155         161 EGLQEGMNWVCK  172 (173)
T ss_pred             CCHHHHHHHHhc
Confidence            999999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04171 SelB SelB subfamily

Probab=99.93  E-value=3.2e-24  Score=154.26  Aligned_cols=152  Identities=19%  Similarity=0.130  Sum_probs=105.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCc---CCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNE---FSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      +.|+++|.+|+|||||+++|++..   +...+.++.+.+.....+.+.. ...+.+|||||++.+......++..+|+++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii   79 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL   79 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence            468999999999999999999743   2222333344444444444442 358999999999988777777889999999


Q ss_pred             EEEECCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC--CCHHHHHHHHHH---cCCcEEEEecCCCCC
Q 027856           91 LVYDVTR---HVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA--VSTEDATAFAER---ENTFFMETSALESMN  162 (217)
Q Consensus        91 ~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~~  162 (217)
                      +|+|+++   +.+.+.+    ..+...  ...|+++++||+|+.....  ...++..+....   .+.+++++||++|.|
T Consensus        80 ~V~d~~~~~~~~~~~~~----~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  153 (164)
T cd04171          80 LVVAADEGIMPQTREHL----EILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG  153 (164)
T ss_pred             EEEECCCCccHhHHHHH----HHHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence            9999987   3333222    222222  1348999999999965321  112334444444   357899999999999


Q ss_pred             HHHHHHHHHH
Q 027856          163 VENAFTEVLT  172 (217)
Q Consensus       163 i~~~~~~i~~  172 (217)
                      ++++|+.+.+
T Consensus       154 v~~l~~~l~~  163 (164)
T cd04171         154 IEELKEYLDE  163 (164)
T ss_pred             HHHHHHHHhh
Confidence            9999988753

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.92  E-value=2.3e-24  Score=151.68  Aligned_cols=134  Identities=23%  Similarity=0.240  Sum_probs=100.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChh-----hhhhhhhhhhcCCcEE
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE-----RYRAITSAYYRGAVGA   89 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-----~~~~~~~~~~~~~d~i   89 (217)
                      ||+++|++|+|||||+++|.+..+.  +.+|.+.+       +..     .+|||||..     .+..+.. .++++|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~-------~~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVE-------YND-----GAIDTPGEYVENRRLYSALIV-TAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--cccceeEE-------EcC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence            7999999999999999999988652  32333222       211     689999972     3333333 47899999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCC-cEEEEecCCCCCHHHHHH
Q 027856           90 LLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENT-FFMETSALESMNVENAFT  168 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~  168 (217)
                      ++|||++++.++.. ..|...+      ..|+++|+||+|+.+ .....++..++++..+. +++++||++|.|++++|+
T Consensus        67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  138 (142)
T TIGR02528        67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD  138 (142)
T ss_pred             EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence            99999999988654 2343321      249999999999865 33456667777777775 799999999999999999


Q ss_pred             HHH
Q 027856          169 EVL  171 (217)
Q Consensus       169 ~i~  171 (217)
                      ++.
T Consensus       139 ~l~  141 (142)
T TIGR02528       139 YLN  141 (142)
T ss_pred             HHh
Confidence            874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.92  E-value=1.8e-23  Score=151.09  Aligned_cols=157  Identities=17%  Similarity=0.210  Sum_probs=109.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCD-DKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      .|+++|.+|+|||||+++|.+..+......+.+.+.....+... +....+.+|||||+..+...+..++..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            58999999999999999999988766544444443333334333 13568999999999999888888899999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCH-HHHHHHHH------HcCCcEEEEecCCCCCHHHH
Q 027856           94 DVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVST-EDATAFAE------RENTFFMETSALESMNVENA  166 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~-~~~~~~~~------~~~~~~~~~Sa~~~~~i~~~  166 (217)
                      |+++....+... .+..+..   .+.|+++|+||+|+........ +....+..      ....+++++|+.+|.|+.++
T Consensus        82 d~~~~~~~~~~~-~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  157 (168)
T cd01887          82 AADDGVMPQTIE-AIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL  157 (168)
T ss_pred             ECCCCccHHHHH-HHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence            998854322221 2222322   3789999999999864221111 11111111      12357999999999999999


Q ss_pred             HHHHHHHHH
Q 027856          167 FTEVLTQIY  175 (217)
Q Consensus       167 ~~~i~~~~~  175 (217)
                      |++|.+...
T Consensus       158 ~~~l~~~~~  166 (168)
T cd01887         158 LEAILLLAE  166 (168)
T ss_pred             HHHHHHhhh
Confidence            999987643

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.92  E-value=6.7e-24  Score=149.15  Aligned_cols=148  Identities=20%  Similarity=0.240  Sum_probs=108.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh------hhhhhhhhhhh--cC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ------ERYRAITSAYY--RG   85 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~------~~~~~~~~~~~--~~   85 (217)
                      ++|+++|.||+|||||+|+|++........+..+.+.....+.+.+  ..+.++|+||.      ...+.....++  .+
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            6899999999999999999999987655556667777777777777  58899999992      11223333333  68


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHH
Q 027856           86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVEN  165 (217)
Q Consensus        86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  165 (217)
                      .|++++|+|+++.+.   --++..++.+.   ++|+++++||+|....+.+.. +...+.+..+++++++||++++|+++
T Consensus        79 ~D~ii~VvDa~~l~r---~l~l~~ql~e~---g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~  151 (156)
T PF02421_consen   79 PDLIIVVVDATNLER---NLYLTLQLLEL---GIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE  151 (156)
T ss_dssp             SSEEEEEEEGGGHHH---HHHHHHHHHHT---TSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred             CCEEEEECCCCCHHH---HHHHHHHHHHc---CCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence            999999999987532   12344444443   899999999999977554433 35667777899999999999999999


Q ss_pred             HHHHH
Q 027856          166 AFTEV  170 (217)
Q Consensus       166 ~~~~i  170 (217)
                      +++.|
T Consensus       152 L~~~I  156 (156)
T PF02421_consen  152 LKDAI  156 (156)
T ss_dssp             HHHHH
T ss_pred             HHhhC
Confidence            98865

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.92  E-value=6e-23  Score=145.02  Aligned_cols=153  Identities=50%  Similarity=0.774  Sum_probs=122.0

Q ss_pred             EEcCCCCCHHHHHHHHhhCcC-CCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECC
Q 027856           18 LIGDSGVGKSNLLSRFTRNEF-SLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVT   96 (217)
Q Consensus        18 v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~   96 (217)
                      ++|++|+|||||++++.+... .....++. .+..............+.+||+||...+...+..+++.+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999999887 44554555 6777777777777889999999999888888888999999999999999


Q ss_pred             ChhhHHHHHHH-HHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHH-HHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 027856           97 RHVTFENVERW-LKELRDHTDSNIVIMLVGNKADLRHLRAVSTED-ATAFAERENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        97 ~~~s~~~~~~~-~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~  171 (217)
                      ++.+......| ...+......+.|+++++||+|+.......... ..........+++++|+..+.|+.+++++|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            99988888776 233333444689999999999997643332222 3344555678899999999999999999986

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>PRK04213 GTP-binding protein; Provisional

Probab=99.91  E-value=5e-24  Score=158.53  Aligned_cols=155  Identities=23%  Similarity=0.240  Sum_probs=105.3

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCC-----------hhhhhh
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAG-----------QERYRA   77 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G-----------~~~~~~   77 (217)
                      +....++|+++|.+|+|||||+++|.+..+.....++  .+.....+.+.    .+.+|||||           ++.++.
T Consensus         5 ~~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~--~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~   78 (201)
T PRK04213          5 RPDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPG--VTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKD   78 (201)
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCc--eeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHH
Confidence            3445689999999999999999999998765444443  33333333322    589999999           466666


Q ss_pred             hhhhhhc----CCcEEEEEEECCChhhH-H---------HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHH
Q 027856           78 ITSAYYR----GAVGALLVYDVTRHVTF-E---------NVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATA  143 (217)
Q Consensus        78 ~~~~~~~----~~d~ii~v~d~~~~~s~-~---------~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~  143 (217)
                      .+..++.    .++++++|+|.+....+ +         .-..+...+..   .++|+++|+||+|+.+..   .+...+
T Consensus        79 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~---~~~~~~  152 (201)
T PRK04213         79 EIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNR---DEVLDE  152 (201)
T ss_pred             HHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcH---HHHHHH
Confidence            6555553    45788899988653221 0         00112222222   379999999999986532   234455


Q ss_pred             HHHHcCC---------cEEEEecCCCCCHHHHHHHHHHHHHH
Q 027856          144 FAERENT---------FFMETSALESMNVENAFTEVLTQIYR  176 (217)
Q Consensus       144 ~~~~~~~---------~~~~~Sa~~~~~i~~~~~~i~~~~~~  176 (217)
                      +....+.         +++++||++| |++++|++|.+.+.+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~  193 (201)
T PRK04213        153 IAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE  193 (201)
T ss_pred             HHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence            5555553         4899999999 999999999987643

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.91  E-value=4.7e-23  Score=164.24  Aligned_cols=155  Identities=23%  Similarity=0.179  Sum_probs=113.4

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh---------hhhhhhhhh
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ---------ERYRAITSA   81 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~---------~~~~~~~~~   81 (217)
                      ...++|+++|.+|+|||||+|+|++........+..+.+.....+.+.+. ..+.+|||+|.         +.+.+.+ .
T Consensus       187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e  264 (351)
T TIGR03156       187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-E  264 (351)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-H
Confidence            34589999999999999999999998754333344445555666666432 48899999996         2233322 3


Q ss_pred             hhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCC
Q 027856           82 YYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESM  161 (217)
Q Consensus        82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  161 (217)
                      .+.++|++++|+|++++.+.+....|...+......+.|+++|+||+|+.....     .... ......++++||++|.
T Consensus       265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~-----v~~~-~~~~~~~i~iSAktg~  338 (351)
T TIGR03156       265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR-----IERL-EEGYPEAVFVSAKTGE  338 (351)
T ss_pred             HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh-----HHHH-HhCCCCEEEEEccCCC
Confidence            478999999999999998877776666666655445789999999999865221     1111 1223458999999999


Q ss_pred             CHHHHHHHHHHH
Q 027856          162 NVENAFTEVLTQ  173 (217)
Q Consensus       162 ~i~~~~~~i~~~  173 (217)
                      |+++++++|.+.
T Consensus       339 GI~eL~~~I~~~  350 (351)
T TIGR03156       339 GLDLLLEAIAER  350 (351)
T ss_pred             CHHHHHHHHHhh
Confidence            999999998754

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.91  E-value=5.2e-23  Score=162.66  Aligned_cols=160  Identities=19%  Similarity=0.117  Sum_probs=116.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhh-------hhhhhhhhhcC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER-------YRAITSAYYRG   85 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~   85 (217)
                      ...|+++|.||||||||+++|++........+.++.......+.+++ ...+.+||+||..+       ........+..
T Consensus       157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier  235 (329)
T TIGR02729       157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER  235 (329)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence            57899999999999999999998764333223334555555555544 25789999999642       12222333567


Q ss_pred             CcEEEEEEECCCh---hhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCC
Q 027856           86 AVGALLVYDVTRH---VTFENVERWLKELRDHTD--SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALES  160 (217)
Q Consensus        86 ~d~ii~v~d~~~~---~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  160 (217)
                      ++++++|+|+++.   .+++.+..|.+++..+..  ..+|+++|+||+|+..... ..+..+.+.+..+..++++||+++
T Consensus       236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg  314 (329)
T TIGR02729       236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTG  314 (329)
T ss_pred             hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCC
Confidence            9999999999976   677778888888766532  4789999999999976422 223344555566778999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 027856          161 MNVENAFTEVLTQI  174 (217)
Q Consensus       161 ~~i~~~~~~i~~~~  174 (217)
                      +|+++++++|.+.+
T Consensus       315 ~GI~eL~~~I~~~l  328 (329)
T TIGR02729       315 EGLDELLYALAELL  328 (329)
T ss_pred             cCHHHHHHHHHHHh
Confidence            99999999998754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.91  E-value=5.3e-23  Score=147.07  Aligned_cols=148  Identities=16%  Similarity=0.162  Sum_probs=110.3

Q ss_pred             EEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhh------hhhhhh--cCCcEE
Q 027856           18 LIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRA------ITSAYY--RGAVGA   89 (217)
Q Consensus        18 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~--~~~d~i   89 (217)
                      ++|.+|+|||||++++.+........++.+.+.....+.+++  ..+.+|||||...+..      ++..++  ..+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999999875544445555555555666665  5789999999866543      344555  489999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 027856           90 LLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTE  169 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  169 (217)
                      ++|+|++++...   ..+...+..   .++|+++|+||+|+.+...+.. +...+....+.+++++||.++.|+.+++++
T Consensus        79 i~v~d~~~~~~~---~~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~  151 (158)
T cd01879          79 VNVVDATNLERN---LYLTLQLLE---LGLPVVVALNMIDEAEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDA  151 (158)
T ss_pred             EEEeeCCcchhH---HHHHHHHHH---cCCCEEEEEehhhhcccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence            999999886542   234444433   3789999999999976443333 345666777889999999999999999999


Q ss_pred             HHHHH
Q 027856          170 VLTQI  174 (217)
Q Consensus       170 i~~~~  174 (217)
                      +.+.+
T Consensus       152 l~~~~  156 (158)
T cd01879         152 IAELA  156 (158)
T ss_pred             HHHHh
Confidence            98753

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>TIGR00436 era GTP-binding protein Era

Probab=99.91  E-value=5.1e-23  Score=159.50  Aligned_cols=153  Identities=20%  Similarity=0.151  Sum_probs=105.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhh--------hhhhhhhhcCC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY--------RAITSAYYRGA   86 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~~~~~~~~   86 (217)
                      +|+++|.+|+|||||+|+|++..+........++......+...+. .++.+|||||....        .......+..+
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~-~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a   80 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA-SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV   80 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC-cEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence            6899999999999999999998865433222222222222322222 47899999995321        12234567899


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCC-cEEEEecCCCCCHHH
Q 027856           87 VGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENT-FFMETSALESMNVEN  165 (217)
Q Consensus        87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~  165 (217)
                      |++++|+|+++..+.+  ..++..+..   .+.|+++|+||+|+..... ..+....+....+. .++++||++|.|+++
T Consensus        81 Dvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~  154 (270)
T TIGR00436        81 DLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTSF  154 (270)
T ss_pred             CEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHHH
Confidence            9999999999876654  344444443   3789999999999864221 12333344444444 699999999999999


Q ss_pred             HHHHHHHHH
Q 027856          166 AFTEVLTQI  174 (217)
Q Consensus       166 ~~~~i~~~~  174 (217)
                      +++++.+.+
T Consensus       155 L~~~l~~~l  163 (270)
T TIGR00436       155 LAAFIEVHL  163 (270)
T ss_pred             HHHHHHHhC
Confidence            999998765

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.91  E-value=3.4e-23  Score=153.24  Aligned_cols=148  Identities=18%  Similarity=0.189  Sum_probs=104.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh--CcCCCCC------------cccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTR--NEFSLES------------KSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAIT   79 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~   79 (217)
                      -+|+++|.+++|||||+++|+.  +.+...+            ..+.+.+.......+....+.+.+|||||++.+...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            4899999999999999999997  4443332            1234444444444455556799999999999999999


Q ss_pred             hhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC-CCHHHHHHHHH-------HcCCc
Q 027856           80 SAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA-VSTEDATAFAE-------RENTF  151 (217)
Q Consensus        80 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~~  151 (217)
                      ..+++.+|++++|+|+++.. ......++..+..   .++|+++|+||+|+.+.+. ...+++.++..       ..+.+
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP  158 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence            99999999999999998742 2222334444333   3789999999999965321 11233444432       23678


Q ss_pred             EEEEecCCCCCHHH
Q 027856          152 FMETSALESMNVEN  165 (217)
Q Consensus       152 ~~~~Sa~~~~~i~~  165 (217)
                      ++++||++|.|+.+
T Consensus       159 iv~~Sa~~g~~~~~  172 (194)
T cd01891         159 VLYASAKNGWASLN  172 (194)
T ss_pred             EEEeehhccccccc
Confidence            99999999988744

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.90  E-value=1.3e-22  Score=168.34  Aligned_cols=183  Identities=21%  Similarity=0.212  Sum_probs=124.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCC-CCCcccceeEeEEEEEEECCeEEEEEEEeCCCh----------hhhhhhh-
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ----------ERYRAIT-   79 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~~-   79 (217)
                      ..++|+++|.+|+|||||+++|++.... ....++.+.+.....+.+++.  .+.+|||||.          +.+.... 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHH
Confidence            4699999999999999999999998753 233344455555555666664  5679999994          2333322 


Q ss_pred             hhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC--CHHHHHH-HHHHcCCcEEEEe
Q 027856           80 SAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV--STEDATA-FAERENTFFMETS  156 (217)
Q Consensus        80 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~-~~~~~~~~~~~~S  156 (217)
                      ..+++.+|++++|+|++++.+.+++. ++..+..   .++|+++|+||+|+.+....  ...+... +.....++++++|
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S  363 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS  363 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence            34578999999999999988877663 3444433   47899999999999652211  0111211 1222346799999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHhhh---------hhccCCCCCCCCCCceeee
Q 027856          157 ALESMNVENAFTEVLTQIYRVVSRK---------ALEIGDDPAALPKGQTINV  200 (217)
Q Consensus       157 a~~~~~i~~~~~~i~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~  200 (217)
                      |++|.|++++|+.+.+.+.....+-         +..+...+|+..+|.++-+
T Consensus       364 Ak~g~gv~~lf~~i~~~~~~~~~~i~t~~ln~~~~~~~~~~~~p~~~g~~~k~  416 (472)
T PRK03003        364 AKTGRAVDKLVPALETALESWDTRIPTGRLNAWLGELVAATPPPVRGGKQPRI  416 (472)
T ss_pred             CCCCCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCCCCeeeeE
Confidence            9999999999999998765444331         2223445666666665544

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=8.3e-23  Score=143.68  Aligned_cols=159  Identities=20%  Similarity=0.337  Sum_probs=129.1

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      ....++|+++|..++||||++++|..+++... .||.|.......+  .  ++.+++||..|++.++.+|..|+.+.+++
T Consensus        14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y--k--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~l   88 (181)
T KOG0070|consen   14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY--K--NISFTVWDVGGQEKLRPLWKHYFQNTQGL   88 (181)
T ss_pred             CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE--c--ceEEEEEecCCCcccccchhhhccCCcEE
Confidence            45679999999999999999999998887666 5888877665555  3  58999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHc-----CCcEEEEecCCCCCH
Q 027856           90 LLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERE-----NTFFMETSALESMNV  163 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i  163 (217)
                      |||+|.++++-+.+++..+..+..... ...|+++.+||.|+..  ..+..++.+.....     ...+-.++|.+|+|+
T Consensus        89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~--als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL  166 (181)
T KOG0070|consen   89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPG--ALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGL  166 (181)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccc--cCCHHHHHhHhhhhccCCCCcEEeeccccccccH
Confidence            999999999988887665555544433 6899999999999976  45555554444332     233777999999999


Q ss_pred             HHHHHHHHHHHH
Q 027856          164 ENAFTEVLTQIY  175 (217)
Q Consensus       164 ~~~~~~i~~~~~  175 (217)
                      .+.++|+...+.
T Consensus       167 ~egl~wl~~~~~  178 (181)
T KOG0070|consen  167 YEGLDWLSNNLK  178 (181)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998765

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.90  E-value=6.7e-23  Score=149.11  Aligned_cols=155  Identities=23%  Similarity=0.193  Sum_probs=106.7

Q ss_pred             EEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhh----hhh---hhhhhcCCcEEE
Q 027856           18 LIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY----RAI---TSAYYRGAVGAL   90 (217)
Q Consensus        18 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~~~---~~~~~~~~d~ii   90 (217)
                      ++|++|||||||+++|.+........+..+.+.....+.+.+ ...+.+|||||....    ..+   ....+..+|+++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii   79 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL   79 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence            589999999999999999875222212222333333344441 357899999996321    112   233567899999


Q ss_pred             EEEECCCh------hhHHHHHHHHHHHHhhcC-------CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEec
Q 027856           91 LVYDVTRH------VTFENVERWLKELRDHTD-------SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSA  157 (217)
Q Consensus        91 ~v~d~~~~------~s~~~~~~~~~~l~~~~~-------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  157 (217)
                      +|+|++++      .+++....|...+.....       .+.|+++|+||+|+..................+..++++||
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (176)
T cd01881          80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA  159 (176)
T ss_pred             EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence            99999988      567777777777764432       37899999999999764332222222334445677999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 027856          158 LESMNVENAFTEVLTQ  173 (217)
Q Consensus       158 ~~~~~i~~~~~~i~~~  173 (217)
                      +++.|++++++++.+.
T Consensus       160 ~~~~gl~~l~~~l~~~  175 (176)
T cd01881         160 KTEEGLDELIRAIYEL  175 (176)
T ss_pred             hhhcCHHHHHHHHHhh
Confidence            9999999999998754

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.90  E-value=2.4e-22  Score=143.38  Aligned_cols=146  Identities=22%  Similarity=0.241  Sum_probs=105.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhh--------hhhhhhc
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRA--------ITSAYYR   84 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~   84 (217)
                      ++|+++|++|+|||||++++++..... ...+..+.......+...+  ..+.+|||||...+..        .....+.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            689999999999999999999887532 2223333333333444443  5789999999643321        2234667


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHH
Q 027856           85 GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVE  164 (217)
Q Consensus        85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  164 (217)
                      .+|++++|+|++++.+......+..      ..+.|+++|+||+|+.+....       .....+.+++++||+++.|+.
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~  146 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD  146 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence            9999999999998877665543332      247999999999998764332       334456789999999999999


Q ss_pred             HHHHHHHHHH
Q 027856          165 NAFTEVLTQI  174 (217)
Q Consensus       165 ~~~~~i~~~~  174 (217)
                      +++++|.+.+
T Consensus       147 ~l~~~l~~~~  156 (157)
T cd04164         147 ELKEALLELA  156 (157)
T ss_pred             HHHHHHHHhh
Confidence            9999988653

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.89  E-value=1.7e-22  Score=137.85  Aligned_cols=114  Identities=35%  Similarity=0.599  Sum_probs=88.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCC--CCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFS--LESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      ||+|+|++|||||||+++|++....  ..+..+.+.+..............+.+||++|++.+...+..++..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999999876  23333444445555666677777799999999998888888889999999999


Q ss_pred             EECCChhhHHHHHHH---HHHHHhhcCCCCcEEEEEeCCC
Q 027856           93 YDVTRHVTFENVERW---LKELRDHTDSNIVIMLVGNKAD  129 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~---~~~l~~~~~~~~p~ivv~nK~D  129 (217)
                      ||++++.|++.+..+   +..+.... .+.|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence            999999999987554   55555433 4699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK15494 era GTPase Era; Provisional

Probab=99.89  E-value=4.2e-22  Score=158.54  Aligned_cols=155  Identities=24%  Similarity=0.345  Sum_probs=107.0

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCc-ccceeEeEEEEEEECCeEEEEEEEeCCChhh-hhhh-------hhh
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEFATRSIRCDDKIVKAQIWDTAGQER-YRAI-------TSA   81 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~-------~~~   81 (217)
                      ...++|+++|.+|||||||+|+|++..+..... +..+.+.....+..++  .++.+|||||... +..+       ...
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~  127 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS  127 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence            345699999999999999999999988753221 1122233333444454  4789999999732 2111       123


Q ss_pred             hhcCCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcC--CcEEEEecC
Q 027856           82 YYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAEREN--TFFMETSAL  158 (217)
Q Consensus        82 ~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~  158 (217)
                      .+..+|++++|+|..+.  +... ..|+..+...   +.|.++|+||+|+.+.   ...++.+++...+  ..++++||+
T Consensus       128 ~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAk  199 (339)
T PRK15494        128 SLHSADLVLLIIDSLKS--FDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISAL  199 (339)
T ss_pred             HhhhCCEEEEEEECCCC--CCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEecc
Confidence            46799999999997653  3333 3355555443   5677899999998642   2455555655543  569999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 027856          159 ESMNVENAFTEVLTQIY  175 (217)
Q Consensus       159 ~~~~i~~~~~~i~~~~~  175 (217)
                      +|.|++++|++|.+.+.
T Consensus       200 tg~gv~eL~~~L~~~l~  216 (339)
T PRK15494        200 SGKNIDGLLEYITSKAK  216 (339)
T ss_pred             CccCHHHHHHHHHHhCC
Confidence            99999999999987654

>cd01889 SelB_euk SelB subfamily

Probab=99.89  E-value=2.8e-22  Score=148.09  Aligned_cols=158  Identities=16%  Similarity=0.124  Sum_probs=102.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC----cCCCCC-----cccceeEeEEEEEE----------ECCeEEEEEEEeCCChhh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRN----EFSLES-----KSTIGVEFATRSIR----------CDDKIVKAQIWDTAGQER   74 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~----~~~~~~-----~~~~~~~~~~~~~~----------~~~~~~~~~l~Dt~G~~~   74 (217)
                      ++|+++|++|+|||||+++|+..    .+...+     ..|.........+.          ..+..+.+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999973    111111     12222222223322          123357899999999876


Q ss_pred             hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC--CCHHHHHHHHH------
Q 027856           75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA--VSTEDATAFAE------  146 (217)
Q Consensus        75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~------  146 (217)
                      +..........+|++++|+|+++..+....+.+. . ...  .+.|+++++||+|+.....  ...++..+...      
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~-~-~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~  156 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV-I-GEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT  156 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH-H-HHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            6544444567789999999998754443332222 1 122  2679999999999864221  11222222211      


Q ss_pred             -HcCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027856          147 -RENTFFMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       147 -~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  175 (217)
                       ..+.+++++||++|.|++++++++.+.+.
T Consensus       157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             CcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence             13567999999999999999999987664

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.89  E-value=5e-22  Score=146.06  Aligned_cols=154  Identities=19%  Similarity=0.226  Sum_probs=110.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCCCCccc----------------ceeEeEEEEEEECCeEEEEEEEeCCChhhhhhh
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKST----------------IGVEFATRSIRCDDKIVKAQIWDTAGQERYRAI   78 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   78 (217)
                      +|+++|.+|+|||||+++|++.........+                .+.......+..  ....+.+|||||...+...
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~liDtpG~~~~~~~   78 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW--PDRRVNFIDTPGHEDFSSE   78 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee--CCEEEEEEeCCCcHHHHHH
Confidence            4899999999999999999998776543221                122222222222  3468999999999888888


Q ss_pred             hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC--CHHHHHHHHHH---------
Q 027856           79 TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV--STEDATAFAER---------  147 (217)
Q Consensus        79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~---------  147 (217)
                      +..++..+|++++|+|++++.+... ..++..+..   .+.|+++++||+|+......  ..+.+.+....         
T Consensus        79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (189)
T cd00881          79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE  154 (189)
T ss_pred             HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence            8889999999999999988665433 233344433   47999999999999752211  12223333332         


Q ss_pred             -----cCCcEEEEecCCCCCHHHHHHHHHHHH
Q 027856          148 -----ENTFFMETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       148 -----~~~~~~~~Sa~~~~~i~~~~~~i~~~~  174 (217)
                           ...+++++||++|.|+.++|+++.+.+
T Consensus       155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence                 246699999999999999999998764

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.89  E-value=1e-21  Score=160.89  Aligned_cols=154  Identities=19%  Similarity=0.238  Sum_probs=116.0

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhh--------hhhh
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRA--------ITSA   81 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~   81 (217)
                      ...++|+++|.+|+|||||+|+|++..... ...+..+.+.....+.+++  ..+.+|||||...+..        ....
T Consensus       201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~  278 (442)
T TIGR00450       201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFK  278 (442)
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence            356899999999999999999999976432 2234445566666666666  4679999999744322        2245


Q ss_pred             hhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCC
Q 027856           82 YYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESM  161 (217)
Q Consensus        82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  161 (217)
                      +++.+|++++|+|++++.+.+..  |+..+..   .+.|+++|+||+|+...      +...++...+.+++.+||++ .
T Consensus       279 ~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~  346 (442)
T TIGR00450       279 AIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-L  346 (442)
T ss_pred             HHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-C
Confidence            77899999999999998877654  6655543   37899999999998642      12344556677899999998 6


Q ss_pred             CHHHHHHHHHHHHHHHH
Q 027856          162 NVENAFTEVLTQIYRVV  178 (217)
Q Consensus       162 ~i~~~~~~i~~~~~~~~  178 (217)
                      |+.++|+.+.+.+.+..
T Consensus       347 gI~~~~~~L~~~i~~~~  363 (442)
T TIGR00450       347 KIKALVDLLTQKINAFY  363 (442)
T ss_pred             CHHHHHHHHHHHHHHHh
Confidence            99999999999887654

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.89  E-value=2e-21  Score=157.42  Aligned_cols=160  Identities=21%  Similarity=0.175  Sum_probs=116.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhh----hhhhhh---hhhcC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER----YRAITS---AYYRG   85 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~---~~~~~   85 (217)
                      ...|+++|.||||||||+++|++........+..+.......+.+.+ ...+.+||+||...    ...+..   ..+..
T Consensus       158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier  236 (424)
T PRK12297        158 LADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIER  236 (424)
T ss_pred             cCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhh
Confidence            34899999999999999999998764433334444444444454442 25789999999532    112222   33556


Q ss_pred             CcEEEEEEECCCh---hhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCC
Q 027856           86 AVGALLVYDVTRH---VTFENVERWLKELRDHTD--SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALES  160 (217)
Q Consensus        86 ~d~ii~v~d~~~~---~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  160 (217)
                      ++++++|+|+++.   .+++....|..++..+..  .++|++||+||+|+..    ..+.++.+....+.+++++||+++
T Consensus       237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~----~~e~l~~l~~~l~~~i~~iSA~tg  312 (424)
T PRK12297        237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE----AEENLEEFKEKLGPKVFPISALTG  312 (424)
T ss_pred             CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC----CHHHHHHHHHHhCCcEEEEeCCCC
Confidence            8999999999864   567777778888876543  3789999999999843    234455566666678999999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q 027856          161 MNVENAFTEVLTQIYRV  177 (217)
Q Consensus       161 ~~i~~~~~~i~~~~~~~  177 (217)
                      .|+++++++|.+.+.+.
T Consensus       313 eGI~eL~~~L~~~l~~~  329 (424)
T PRK12297        313 QGLDELLYAVAELLEET  329 (424)
T ss_pred             CCHHHHHHHHHHHHHhC
Confidence            99999999999877654

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.89  E-value=8.8e-22  Score=166.46  Aligned_cols=157  Identities=18%  Similarity=0.231  Sum_probs=116.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCc-------CCCCCcc------cceeEeEEEE--EEE---CCeEEEEEEEeCCChhh
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNE-------FSLESKS------TIGVEFATRS--IRC---DDKIVKAQIWDTAGQER   74 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~-------~~~~~~~------~~~~~~~~~~--~~~---~~~~~~~~l~Dt~G~~~   74 (217)
                      .-+|+++|+.++|||||+++|+...       +...+..      +.+.+.....  +.+   ++..+.++||||||+..
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            4689999999999999999998752       2222222      1244443332  322   46668999999999999


Q ss_pred             hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCC---c
Q 027856           75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENT---F  151 (217)
Q Consensus        75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~  151 (217)
                      |...+..++..+|++++|+|+++..+.+....|...+.    .+.|+++|+||+|+.+..  ..+...++....+.   .
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~  156 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE  156 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence            99999999999999999999999777666666655443    378999999999986422  12223444444554   3


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHH
Q 027856          152 FMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       152 ~~~~Sa~~~~~i~~~~~~i~~~~~  175 (217)
                      ++++||++|.|+.++|++|.+.+.
T Consensus       157 vi~vSAktG~GI~~Lle~I~~~lp  180 (595)
T TIGR01393       157 AILASAKTGIGIEEILEAIVKRVP  180 (595)
T ss_pred             EEEeeccCCCCHHHHHHHHHHhCC
Confidence            899999999999999999987653

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.89  E-value=4.2e-22  Score=165.41  Aligned_cols=155  Identities=23%  Similarity=0.225  Sum_probs=109.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCChh--------hhhhhhhhh
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE--------RYRAITSAY   82 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~~~~~~~   82 (217)
                      ..++|+|+|.+|||||||+|+|++..... ...+..+.+.......+.+  ..+.+|||||.+        .+...+..+
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~  114 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA  114 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence            35799999999999999999999987543 2333333444444444455  468899999965        234455667


Q ss_pred             hcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCC
Q 027856           83 YRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMN  162 (217)
Q Consensus        83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  162 (217)
                      ++.+|++++|+|+++..+... ..+...+..   .++|+++|+||+|+....   .+..+.+....+ .++++||++|.|
T Consensus       115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~~~g~~-~~~~iSA~~g~g  186 (472)
T PRK03003        115 MRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALWSLGLG-EPHPVSALHGRG  186 (472)
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHHhcCCC-CeEEEEcCCCCC
Confidence            899999999999998766543 344444443   379999999999986421   122222222222 367999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027856          163 VENAFTEVLTQIYR  176 (217)
Q Consensus       163 i~~~~~~i~~~~~~  176 (217)
                      ++++|+++++.+.+
T Consensus       187 i~eL~~~i~~~l~~  200 (472)
T PRK03003        187 VGDLLDAVLAALPE  200 (472)
T ss_pred             cHHHHHHHHhhccc
Confidence            99999999988754

>PRK11058 GTPase HflX; Provisional

Probab=99.89  E-value=6.5e-22  Score=161.11  Aligned_cols=161  Identities=23%  Similarity=0.181  Sum_probs=114.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhh--hhhh------hhhhc
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY--RAIT------SAYYR   84 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~~------~~~~~   84 (217)
                      .++|+++|.+|+|||||+|+|++..+.....+..+.+.....+.+.+. ..+.+|||+|..+.  ...+      ...+.
T Consensus       197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~  275 (426)
T PRK11058        197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETR  275 (426)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence            468999999999999999999998765444444555555555555543 26789999996321  1122      23468


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCc-EEEEecCCCCCH
Q 027856           85 GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTF-FMETSALESMNV  163 (217)
Q Consensus        85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i  163 (217)
                      .+|++++|+|++++.+.+.+..|...+......+.|+++|+||+|+.....   ....  ....+.+ ++.+||++|.|+
T Consensus       276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GI  350 (426)
T PRK11058        276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGI  350 (426)
T ss_pred             cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCH
Confidence            899999999999998877776555555554445799999999999864211   1111  1123444 589999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 027856          164 ENAFTEVLTQIYRVVS  179 (217)
Q Consensus       164 ~~~~~~i~~~~~~~~~  179 (217)
                      ++++++|.+.+.....
T Consensus       351 deL~e~I~~~l~~~~~  366 (426)
T PRK11058        351 PLLFQALTERLSGEVA  366 (426)
T ss_pred             HHHHHHHHHHhhhccE
Confidence            9999999998865433

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.89  E-value=1.3e-21  Score=161.27  Aligned_cols=160  Identities=21%  Similarity=0.198  Sum_probs=109.9

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhh-----------
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAI-----------   78 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----------   78 (217)
                      ...++|+++|.+|+|||||+++|++..... ...+..+.+.....+..++  ..+.+|||||.......           
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~  247 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLR  247 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHH
Confidence            456899999999999999999999876432 2223333333334444455  37899999996432211           


Q ss_pred             hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHH-H----cCCcEE
Q 027856           79 TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAE-R----ENTFFM  153 (217)
Q Consensus        79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~----~~~~~~  153 (217)
                      ....++.+|++++|+|++++.+..+.. ++..+..   .+.|+++|+||+|+.+ .....++...... .    .+++++
T Consensus       248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~vi  322 (429)
T TIGR03594       248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVK-DEKTREEFKKELRRKLPFLDFAPIV  322 (429)
T ss_pred             HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCC-CHHHHHHHHHHHHHhcccCCCCceE
Confidence            134678999999999999887766543 3333333   3789999999999972 1111222222222 2    247899


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHH
Q 027856          154 ETSALESMNVENAFTEVLTQIYRV  177 (217)
Q Consensus       154 ~~Sa~~~~~i~~~~~~i~~~~~~~  177 (217)
                      ++||++|.|+.++|+++.+.+...
T Consensus       323 ~~SA~~g~~v~~l~~~i~~~~~~~  346 (429)
T TIGR03594       323 FISALTGQGVDKLLDAIDEVYENA  346 (429)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999999876543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.89  E-value=2.9e-22  Score=136.38  Aligned_cols=168  Identities=27%  Similarity=0.501  Sum_probs=146.3

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      .....++|.++|++..|||||+-.+.++.+..++..+.|.++...++.+.+..+.+.+||..|++++........+.+-+
T Consensus        16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva   95 (205)
T KOG1673|consen   16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA   95 (205)
T ss_pred             ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence            34468999999999999999999999999999999999999999999999999999999999999999888888899999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCc-----cCCCHHHHHHHHHHcCCcEEEEecCCCCCH
Q 027856           89 ALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL-----RAVSTEDATAFAERENTFFMETSALESMNV  163 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  163 (217)
                      ++|++|++.+.++..+..|+.+.+......+|+ +|++|.|..-.     .+.....+..+++..++..|.+|+..+.|+
T Consensus        96 IlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPi-lvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv  174 (205)
T KOG1673|consen   96 ILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPI-LVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINV  174 (205)
T ss_pred             EEEEEecCchHHHHHHHHHHHHHhccCCccceE-EeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccH
Confidence            999999999999999999999999888767775 88999997321     111223356667778999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027856          164 ENAFTEVLTQIYRV  177 (217)
Q Consensus       164 ~~~~~~i~~~~~~~  177 (217)
                      ..+|..++-++...
T Consensus       175 ~KIFK~vlAklFnL  188 (205)
T KOG1673|consen  175 QKIFKIVLAKLFNL  188 (205)
T ss_pred             HHHHHHHHHHHhCC
Confidence            99999988777643

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.88  E-value=2.1e-21  Score=159.27  Aligned_cols=165  Identities=15%  Similarity=0.077  Sum_probs=115.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhh----h---hhhhhhhhc
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER----Y---RAITSAYYR   84 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~---~~~~~~~~~   84 (217)
                      ....|+|+|.||||||||+++|++........+..+.......+.+.+  ..+.+||+||...    .   .......+.
T Consensus       158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhie  235 (500)
T PRK12296        158 SVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIE  235 (500)
T ss_pred             ccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence            357899999999999999999998765443334445555555565555  5789999999421    1   111223457


Q ss_pred             CCcEEEEEEECCCh----hhHHHHHHHHHHHHhhcC-----------CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcC
Q 027856           85 GAVGALLVYDVTRH----VTFENVERWLKELRDHTD-----------SNIVIMLVGNKADLRHLRAVSTEDATAFAEREN  149 (217)
Q Consensus        85 ~~d~ii~v~d~~~~----~s~~~~~~~~~~l~~~~~-----------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~  149 (217)
                      .+|++++|+|+++.    ..+..+..+..+|..+..           ..+|++||+||+|+.+.... .+.........+
T Consensus       236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g  314 (500)
T PRK12296        236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARG  314 (500)
T ss_pred             hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcC
Confidence            89999999999753    344455555555544321           36899999999999653221 222333344457


Q ss_pred             CcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 027856          150 TFFMETSALESMNVENAFTEVLTQIYRVVS  179 (217)
Q Consensus       150 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  179 (217)
                      .+++++||+++.|+++++.+|.+.+.+.+.
T Consensus       315 ~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~  344 (500)
T PRK12296        315 WPVFEVSAASREGLRELSFALAELVEEARA  344 (500)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence            889999999999999999999988877654

>cd01894 EngA1 EngA1 subfamily

Probab=99.88  E-value=4.5e-22  Score=141.97  Aligned_cols=146  Identities=21%  Similarity=0.146  Sum_probs=100.4

Q ss_pred             EEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhh--------hhhhhhcCCc
Q 027856           17 VLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRA--------ITSAYYRGAV   87 (217)
Q Consensus        17 ~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~~~d   87 (217)
                      +++|.+|+|||||+++|++..... ...+..+.+........++  ..+.+|||||...+..        .+...+..+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            479999999999999999875321 1122223333333444444  6789999999765332        3345678899


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCC-cEEEEecCCCCCHHHH
Q 027856           88 GALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENT-FFMETSALESMNVENA  166 (217)
Q Consensus        88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~  166 (217)
                      ++++|+|+.++.+.... .+...+..   .+.|+++|+||+|+......     .......+. .++++|+++|.|++++
T Consensus        79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l  149 (157)
T cd01894          79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL  149 (157)
T ss_pred             EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence            99999999876544332 22233332   26899999999998653221     222334555 6899999999999999


Q ss_pred             HHHHHHH
Q 027856          167 FTEVLTQ  173 (217)
Q Consensus       167 ~~~i~~~  173 (217)
                      |+++++.
T Consensus       150 ~~~l~~~  156 (157)
T cd01894         150 LDAILEL  156 (157)
T ss_pred             HHHHHhh
Confidence            9999875

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.88  E-value=3.5e-22  Score=134.71  Aligned_cols=157  Identities=22%  Similarity=0.379  Sum_probs=122.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+.+.++|..++|||||++....+.+.....+|.|...    ..++...+.+.+||.+|+..+++.|+.|++.+++++||
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnm----rk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~   95 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNM----RKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV   95 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccchhhhccccccee----EEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence            57899999999999999999998888777778877543    34455678999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCccCCCHHHHHH-H----HHHcCCcEEEEecCCCCCHHHH
Q 027856           93 YDVTRHVTFENVERWLKELRDH-TDSNIVIMLVGNKADLRHLRAVSTEDATA-F----AERENTFFMETSALESMNVENA  166 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~~i~~~  166 (217)
                      +|+.+++.+...+.-+..+... .-.++|+++.+||.|+.+  ..+...+.. +    .....+-+|.+|++...|++.+
T Consensus        96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~--AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~  173 (186)
T KOG0075|consen   96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPG--ALSKIALIERMGLSSITDREVCCFSISCKEKVNIDIT  173 (186)
T ss_pred             eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcc--cccHHHHHHHhCccccccceEEEEEEEEcCCccHHHH
Confidence            9999998776665544444332 225899999999999865  222222211 1    1112345899999999999999


Q ss_pred             HHHHHHHHH
Q 027856          167 FTEVLTQIY  175 (217)
Q Consensus       167 ~~~i~~~~~  175 (217)
                      .+|++++.-
T Consensus       174 ~~Wli~hsk  182 (186)
T KOG0075|consen  174 LDWLIEHSK  182 (186)
T ss_pred             HHHHHHHhh
Confidence            999997653

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.88  E-value=1.1e-21  Score=161.49  Aligned_cols=149  Identities=23%  Similarity=0.221  Sum_probs=111.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhh--------hhhhh
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRA--------ITSAY   82 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~   82 (217)
                      ..++|+++|.+|+|||||+|+|++..... ...+..+.+.....+.+++  ..+.+|||||.+.+..        ....+
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            35899999999999999999999987532 2334444555555666665  5789999999754322        12346


Q ss_pred             hcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCC
Q 027856           83 YRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMN  162 (217)
Q Consensus        83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  162 (217)
                      +..+|++++|+|++++.+.+....|..      ..+.|+++|+||+|+.......        ...+..++++||++|.|
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G  357 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG  357 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence            789999999999999887765444433      2478999999999996532211        33456799999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027856          163 VENAFTEVLTQIYR  176 (217)
Q Consensus       163 i~~~~~~i~~~~~~  176 (217)
                      ++++++++.+.+..
T Consensus       358 I~~L~~~L~~~l~~  371 (449)
T PRK05291        358 IDELREAIKELAFG  371 (449)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999987754

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.88  E-value=4.3e-21  Score=142.10  Aligned_cols=159  Identities=18%  Similarity=0.204  Sum_probs=107.1

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh----------hhhhhh
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ----------ERYRAI   78 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~   78 (217)
                      .....++|+++|.+|+|||||+++|++..+...+.++.+.+........   ...+.+|||||.          +.+...
T Consensus        20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~   96 (196)
T PRK00454         20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKL   96 (196)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence            4557799999999999999999999998654444455554443333332   257899999993          344444


Q ss_pred             hhhhhcC---CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC--CHHHHHHHHHHcCCcEE
Q 027856           79 TSAYYRG---AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV--STEDATAFAERENTFFM  153 (217)
Q Consensus        79 ~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~  153 (217)
                      ...++..   ++++++++|.+++.+.... .+...+..   .+.|+++++||+|+....+.  ..+++..........++
T Consensus        97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~  172 (196)
T PRK00454         97 IEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI  172 (196)
T ss_pred             HHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE
Confidence            4555554   4678888998876543321 12222222   37889999999998653221  12223334443467899


Q ss_pred             EEecCCCCCHHHHHHHHHHHH
Q 027856          154 ETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       154 ~~Sa~~~~~i~~~~~~i~~~~  174 (217)
                      ++||+++.|++++++.|.+.+
T Consensus       173 ~~Sa~~~~gi~~l~~~i~~~~  193 (196)
T PRK00454        173 LFSSLKKQGIDELRAAIAKWL  193 (196)
T ss_pred             EEEcCCCCCHHHHHHHHHHHh
Confidence            999999999999999987654

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.88  E-value=1.8e-21  Score=139.23  Aligned_cols=140  Identities=16%  Similarity=0.204  Sum_probs=99.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh-----hhhhhhhhhhhcCCcEE
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ-----ERYRAITSAYYRGAVGA   89 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-----~~~~~~~~~~~~~~d~i   89 (217)
                      +|+++|.+|+|||||+++|.+... . ...+       ..+.+...    .+|||||.     +.+..+ ...+..+|++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~-~-~~~~-------~~v~~~~~----~~iDtpG~~~~~~~~~~~~-~~~~~~ad~i   68 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYT-L-ARKT-------QAVEFNDK----GDIDTPGEYFSHPRWYHAL-ITTLQDVDML   68 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCc-c-Cccc-------eEEEECCC----CcccCCccccCCHHHHHHH-HHHHhcCCEE
Confidence            799999999999999999886542 1 1112       12222222    26999996     222222 3347899999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCC--cEEEEecCCCCCHHHHH
Q 027856           90 LLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENT--FFMETSALESMNVENAF  167 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~  167 (217)
                      ++|+|+++..++.  ..|+..+    ..+.|+++++||+|+.+   ...+.+.+++...++  +++++||++|.|++++|
T Consensus        69 l~v~d~~~~~s~~--~~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~  139 (158)
T PRK15467         69 IYVHGANDPESRL--PAGLLDI----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLV  139 (158)
T ss_pred             EEEEeCCCccccc--CHHHHhc----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHH
Confidence            9999999887642  2333332    13678999999999854   235566677777764  79999999999999999


Q ss_pred             HHHHHHHHHH
Q 027856          168 TEVLTQIYRV  177 (217)
Q Consensus       168 ~~i~~~~~~~  177 (217)
                      +.+.+.+.+.
T Consensus       140 ~~l~~~~~~~  149 (158)
T PRK15467        140 DYLASLTKQE  149 (158)
T ss_pred             HHHHHhchhh
Confidence            9998776544

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=3.3e-21  Score=129.02  Aligned_cols=156  Identities=22%  Similarity=0.408  Sum_probs=123.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..++|+++|..++||||++..|..+.... ..+|.|......++    +++.+.+||..|++..+.+|..|+....++||
T Consensus        16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~-~ipTvGFnvetVty----kN~kfNvwdvGGqd~iRplWrhYy~gtqglIF   90 (180)
T KOG0071|consen   16 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   90 (180)
T ss_pred             ccceEEEEecccCCceehhhHHhcCCCcc-cccccceeEEEEEe----eeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence            36899999999999999999998776433 33677765544444    45899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHH-HHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHc-----CCcEEEEecCCCCCHHH
Q 027856           92 VYDVTRHVTFENVERWLK-ELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERE-----NTFFMETSALESMNVEN  165 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~-~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~  165 (217)
                      |+|..+..-.++++.-+. .+....-...+++|.+||.|+++  ..+..|+..+....     ...+.++++.+|.++.+
T Consensus        91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~--A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~e  168 (180)
T KOG0071|consen   91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPD--AMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKE  168 (180)
T ss_pred             EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccc--ccCHHHHHHHhccccccCCccEeeccccccchhHHH
Confidence            999988877776655333 33333335789999999999987  55777777665442     23478899999999999


Q ss_pred             HHHHHHHHH
Q 027856          166 AFTEVLTQI  174 (217)
Q Consensus       166 ~~~~i~~~~  174 (217)
                      -|.|+...+
T Consensus       169 glswlsnn~  177 (180)
T KOG0071|consen  169 GLSWLSNNL  177 (180)
T ss_pred             HHHHHHhhc
Confidence            999998754

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.88  E-value=2.1e-21  Score=144.44  Aligned_cols=159  Identities=23%  Similarity=0.232  Sum_probs=101.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCC---CCcc--cceeEeEEEEEE-----------------------EC--C----
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSL---ESKS--TIGVEFATRSIR-----------------------CD--D----   59 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~---~~~~--~~~~~~~~~~~~-----------------------~~--~----   59 (217)
                      ++|+++|+.|+|||||+.++.+.....   ....  +....+....+.                       +.  +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            579999999999999999997652211   1111  111111111110                       00  1    


Q ss_pred             eEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC--C
Q 027856           60 KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV--S  137 (217)
Q Consensus        60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~  137 (217)
                      ....+.||||||++.+...+...+..+|++++|+|++++.........+..+...  ...|+++|+||+|+.+....  .
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~  158 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN  158 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence            1157899999999998888888888999999999998742111111222223222  13578999999998652211  1


Q ss_pred             HHHHHHHHHH---cCCcEEEEecCCCCCHHHHHHHHHHHH
Q 027856          138 TEDATAFAER---ENTFFMETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       138 ~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~  174 (217)
                      .+++.+++..   .+.+++++||++|+|++++|++|.+.+
T Consensus       159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l  198 (203)
T cd01888         159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI  198 (203)
T ss_pred             HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence            1333333333   256799999999999999999998644

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.87  E-value=3.8e-21  Score=140.48  Aligned_cols=149  Identities=19%  Similarity=0.259  Sum_probs=100.6

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh----------hhhhhh
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ----------ERYRAI   78 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~   78 (217)
                      +....++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+..++   .+.+|||||.          +.+...
T Consensus        14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~   90 (179)
T TIGR03598        14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL   90 (179)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence            346678999999999999999999999864444445555444444444443   6899999993          233444


Q ss_pred             hhhhhc---CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC--CCHHHHHHHHHHcC--Cc
Q 027856           79 TSAYYR---GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA--VSTEDATAFAEREN--TF  151 (217)
Q Consensus        79 ~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~--~~  151 (217)
                      ...+++   .++++++|+|++++.+.... .++..+..   .+.|+++++||+|+.....  ...++++..+...+  ..
T Consensus        91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~  166 (179)
T TIGR03598        91 IEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPS  166 (179)
T ss_pred             HHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCc
Confidence            444554   35899999999886554443 23333333   3789999999999864321  12344444455443  47


Q ss_pred             EEEEecCCCCCHH
Q 027856          152 FMETSALESMNVE  164 (217)
Q Consensus       152 ~~~~Sa~~~~~i~  164 (217)
                      +|++||++|+|++
T Consensus       167 v~~~Sa~~g~gi~  179 (179)
T TIGR03598       167 VQLFSSLKKTGID  179 (179)
T ss_pred             eEEEECCCCCCCC
Confidence            9999999999873

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>COG1159 Era GTPase [General function prediction only]

Probab=99.87  E-value=2.4e-21  Score=146.49  Aligned_cols=161  Identities=22%  Similarity=0.159  Sum_probs=115.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh--------hhhhhhhhhhh
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ--------ERYRAITSAYY   83 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--------~~~~~~~~~~~   83 (217)
                      ..--|+++|.||+|||||+|+++|...+..+....++......+...+ ..++.|+||||.        +.........+
T Consensus         5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl   83 (298)
T COG1159           5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAARSAL   83 (298)
T ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence            345689999999999999999999999887766666655555554444 579999999993        22334445567


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcC-CcEEEEecCCCCC
Q 027856           84 RGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAEREN-TFFMETSALESMN  162 (217)
Q Consensus        84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~  162 (217)
                      ..+|+++||+|+++..... -+..++.+..   ...|+++++||+|.................... ..++++||++|.|
T Consensus        84 ~dvDlilfvvd~~~~~~~~-d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n  159 (298)
T COG1159          84 KDVDLILFVVDADEGWGPG-DEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDN  159 (298)
T ss_pred             ccCcEEEEEEeccccCCcc-HHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCC
Confidence            8999999999998865432 1334444443   368999999999987644321222222222233 4599999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 027856          163 VENAFTEVLTQIYRV  177 (217)
Q Consensus       163 i~~~~~~i~~~~~~~  177 (217)
                      ++.+.+.+..++.+.
T Consensus       160 ~~~L~~~i~~~Lpeg  174 (298)
T COG1159         160 VDTLLEIIKEYLPEG  174 (298)
T ss_pred             HHHHHHHHHHhCCCC
Confidence            999999888776543

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.87  E-value=7.7e-21  Score=160.10  Aligned_cols=153  Identities=18%  Similarity=0.221  Sum_probs=111.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..++|+++|++++|||||+++|.+..+........+.+.....+.+++. ..+.||||||++.|..++...+..+|++++
T Consensus        86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL  164 (587)
T TIGR00487        86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL  164 (587)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence            5689999999999999999999998876655444444444444544432 278999999999999988888999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHc-------C--CcEEEEecCCCCC
Q 027856           92 VYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERE-------N--TFFMETSALESMN  162 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~~~~  162 (217)
                      |+|+++....+..+.+ ..+   ...++|+++++||+|+...   ..++....+...       +  .+++++||++|.|
T Consensus       165 VVda~dgv~~qT~e~i-~~~---~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG  237 (587)
T TIGR00487       165 VVAADDGVMPQTIEAI-SHA---KAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG  237 (587)
T ss_pred             EEECCCCCCHhHHHHH-HHH---HHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence            9999875432222222 222   2237899999999998542   233333333222       2  4699999999999


Q ss_pred             HHHHHHHHHH
Q 027856          163 VENAFTEVLT  172 (217)
Q Consensus       163 i~~~~~~i~~  172 (217)
                      +.++|+++..
T Consensus       238 I~eLl~~I~~  247 (587)
T TIGR00487       238 IDELLDMILL  247 (587)
T ss_pred             hHHHHHhhhh
Confidence            9999999874

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.87  E-value=8e-21  Score=153.14  Aligned_cols=163  Identities=20%  Similarity=0.131  Sum_probs=115.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhh-------hhhhhhhhhcC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER-------YRAITSAYYRG   85 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~   85 (217)
                      ...|+++|.||||||||+|+|++........+.++.......+.+.+. ..+.|+||||...       ........+..
T Consensus       159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~-~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r  237 (390)
T PRK12298        159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE-RSFVVADIPGLIEGASEGAGLGIRFLKHLER  237 (390)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC-cEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence            348999999999999999999987653333344444455555555432 3689999999532       11122235788


Q ss_pred             CcEEEEEEECC---ChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcC--CcEEEEecC
Q 027856           86 AVGALLVYDVT---RHVTFENVERWLKELRDHTD--SNIVIMLVGNKADLRHLRAVSTEDATAFAEREN--TFFMETSAL  158 (217)
Q Consensus        86 ~d~ii~v~d~~---~~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~  158 (217)
                      ++++++|+|++   ....++....|+.++..+..  ...|+++|+||+|+....++ .+.+.++....+  ..++++||+
T Consensus       238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~  316 (390)
T PRK12298        238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAA  316 (390)
T ss_pred             CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECC
Confidence            99999999988   44566667778777766532  36899999999998653322 233344444433  368999999


Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q 027856          159 ESMNVENAFTEVLTQIYRV  177 (217)
Q Consensus       159 ~~~~i~~~~~~i~~~~~~~  177 (217)
                      ++.|++++++.|.+.+.+.
T Consensus       317 tg~GIdeLl~~I~~~L~~~  335 (390)
T PRK12298        317 SGLGVKELCWDLMTFIEEN  335 (390)
T ss_pred             CCcCHHHHHHHHHHHhhhC
Confidence            9999999999999887643

>cd04163 Era Era subfamily

Probab=99.87  E-value=7.8e-21  Score=136.61  Aligned_cols=156  Identities=21%  Similarity=0.151  Sum_probs=103.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhh--------hhhhhhhhc
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY--------RAITSAYYR   84 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~~~~~~   84 (217)
                      ..+|+++|.+|+|||||+++|++...........+... .....+......+.+|||||....        .......+.
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRN-RIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceec-eEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999876433322222211 111222333468899999995322        223345678


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHc-CCcEEEEecCCCCCH
Q 027856           85 GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERE-NTFFMETSALESMNV  163 (217)
Q Consensus        85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i  163 (217)
                      .+|++++|+|++++.+.. ...+...+...   +.|+++|+||+|+........+....+.... ..+++++|++++.++
T Consensus        82 ~~d~i~~v~d~~~~~~~~-~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  157 (168)
T cd04163          82 DVDLVLFVVDASEPIGEG-DEFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV  157 (168)
T ss_pred             hCCEEEEEEECCCccCch-HHHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence            899999999999873211 12333334332   6899999999998742222233333444444 367999999999999


Q ss_pred             HHHHHHHHHH
Q 027856          164 ENAFTEVLTQ  173 (217)
Q Consensus       164 ~~~~~~i~~~  173 (217)
                      +++++.|.+.
T Consensus       158 ~~l~~~l~~~  167 (168)
T cd04163         158 DELLEEIVKY  167 (168)
T ss_pred             HHHHHHHHhh
Confidence            9999999764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK00089 era GTPase Era; Reviewed

Probab=99.87  E-value=7.6e-21  Score=149.18  Aligned_cols=158  Identities=21%  Similarity=0.197  Sum_probs=105.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhh--------hhhhhhhhhc
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER--------YRAITSAYYR   84 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~~   84 (217)
                      .-.|+++|.+|||||||+|+|++...........++......+... ...++.+|||||...        +.......+.
T Consensus         5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~   83 (292)
T PRK00089          5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK   83 (292)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence            3569999999999999999999988755443332222222222222 236899999999532        1233344678


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcC-CcEEEEecCCCCCH
Q 027856           85 GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAEREN-TFFMETSALESMNV  163 (217)
Q Consensus        85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i  163 (217)
                      .+|++++|+|+++..+.. ....+..+..   .+.|+++|+||+|+.............+....+ ..++++||+++.|+
T Consensus        84 ~~D~il~vvd~~~~~~~~-~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv  159 (292)
T PRK00089         84 DVDLVLFVVDADEKIGPG-DEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNV  159 (292)
T ss_pred             cCCEEEEEEeCCCCCChh-HHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCH
Confidence            999999999998843211 1233333332   368999999999997422222333444444444 56999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027856          164 ENAFTEVLTQIY  175 (217)
Q Consensus       164 ~~~~~~i~~~~~  175 (217)
                      +++++++.+.+.
T Consensus       160 ~~L~~~L~~~l~  171 (292)
T PRK00089        160 DELLDVIAKYLP  171 (292)
T ss_pred             HHHHHHHHHhCC
Confidence            999999987764

>cd01895 EngA2 EngA2 subfamily

Probab=99.87  E-value=2.1e-20  Score=135.34  Aligned_cols=155  Identities=22%  Similarity=0.211  Sum_probs=103.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhh----------h-hhhh
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY----------R-AITS   80 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~-~~~~   80 (217)
                      .++|+++|.+|+|||||+++|++..... ...+..+.......+..++  ..+.+|||||....          . ....
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence            5789999999999999999999876432 2222222333333444454  35789999995322          1 1123


Q ss_pred             hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHH-HHc----CCcEEEE
Q 027856           81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFA-ERE----NTFFMET  155 (217)
Q Consensus        81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~~~----~~~~~~~  155 (217)
                      ..+..+|++++|+|++++.+.... .++..+..   .+.|+++++||+|+.+......+...+.. ...    ..+++++
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI  155 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence            356789999999999988765443 23333322   36899999999998764322222222222 222    3679999


Q ss_pred             ecCCCCCHHHHHHHHHHH
Q 027856          156 SALESMNVENAFTEVLTQ  173 (217)
Q Consensus       156 Sa~~~~~i~~~~~~i~~~  173 (217)
                      ||+++.|+.++++.+.+.
T Consensus       156 Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         156 SALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             eccCCCCHHHHHHHHHHh
Confidence            999999999999988753

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.87  E-value=1.3e-20  Score=159.35  Aligned_cols=154  Identities=21%  Similarity=0.183  Sum_probs=114.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCc---CCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNE---FSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      +.|+++|++++|||||+++|++..   +......+.+.+.....+..++  ..+.+||+||++.|...+...+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            479999999999999999999743   3334445556665555555555  78999999999999988888899999999


Q ss_pred             EEEECCC---hhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCccCC--CHHHHHHHHHHc----CCcEEEEecCCC
Q 027856           91 LVYDVTR---HVTFENVERWLKELRDHTDSNIV-IMLVGNKADLRHLRAV--STEDATAFAERE----NTFFMETSALES  160 (217)
Q Consensus        91 ~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~Sa~~~  160 (217)
                      +|+|+++   +.+.+.+.    .+..   .++| +++|+||+|+.+...+  ..+++.++....    +.+++++||++|
T Consensus        79 LVVDa~~G~~~qT~ehl~----il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG  151 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHLA----VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG  151 (581)
T ss_pred             EEEECCCCCcHHHHHHHH----HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence            9999998   44443332    2222   2667 9999999999764322  123444555443    467999999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q 027856          161 MNVENAFTEVLTQIYR  176 (217)
Q Consensus       161 ~~i~~~~~~i~~~~~~  176 (217)
                      .|+++++..+...+..
T Consensus       152 ~GI~eL~~~L~~l~~~  167 (581)
T TIGR00475       152 QGIGELKKELKNLLES  167 (581)
T ss_pred             CCchhHHHHHHHHHHh
Confidence            9999999988766543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.86  E-value=2.4e-20  Score=159.47  Aligned_cols=157  Identities=20%  Similarity=0.239  Sum_probs=113.2

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccce--eEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIG--VEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      ...+.|+|+|+.++|||||+++|.+..+........+  ...+...+..++....+.||||||++.|..++...+..+|+
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi  321 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI  321 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence            4568999999999999999999998877554333222  22333334444556799999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHH-------HHHcC--CcEEEEecCC
Q 027856           89 ALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAF-------AEREN--TFFMETSALE  159 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-------~~~~~--~~~~~~Sa~~  159 (217)
                      +++|+|+++....+..+.+ ..+.   ..++|+++++||+|+....   .++..+.       ...++  ++++++||++
T Consensus       322 aILVVDA~dGv~~QT~E~I-~~~k---~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt  394 (742)
T CHL00189        322 AILIIAADDGVKPQTIEAI-NYIQ---AANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISASQ  394 (742)
T ss_pred             EEEEEECcCCCChhhHHHH-HHHH---hcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence            9999999885433322222 1222   2478999999999986522   2222222       12233  6799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027856          160 SMNVENAFTEVLTQI  174 (217)
Q Consensus       160 ~~~i~~~~~~i~~~~  174 (217)
                      |.|++++|+++....
T Consensus       395 G~GIdeLle~I~~l~  409 (742)
T CHL00189        395 GTNIDKLLETILLLA  409 (742)
T ss_pred             CCCHHHHHHhhhhhh
Confidence            999999999998753

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.86  E-value=1.2e-20  Score=138.80  Aligned_cols=160  Identities=22%  Similarity=0.257  Sum_probs=108.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCC------------------cccceeEeEEEEEEECCeEEEEEEEeCCChh
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLES------------------KSTIGVEFATRSIRCDDKIVKAQIWDTAGQE   73 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   73 (217)
                      ..++|+++|+.++|||||+++|+........                  ....+.......+........++++||||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            3589999999999999999999975421110                  0112222223333212444799999999999


Q ss_pred             hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC-CCHHHHH-HHHHHc---
Q 027856           74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA-VSTEDAT-AFAERE---  148 (217)
Q Consensus        74 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~-~~~~~~---  148 (217)
                      .|.......+..+|++|+|+|+.+...... ...+..+...   +.|+++|+||+|+...+. ...++.. .+.+..   
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~~---~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~  157 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILREL---GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN  157 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHHT---T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred             ceeecccceecccccceeeeeccccccccc-cccccccccc---ccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence            998888888999999999999987654333 3333444443   788999999999873211 0112222 232332   


Q ss_pred             ---CCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027856          149 ---NTFFMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       149 ---~~~~~~~Sa~~~~~i~~~~~~i~~~~~  175 (217)
                         .++++++||.+|.|+.++++.+.+.+.
T Consensus       158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  158 GEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             TTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             ccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence               256999999999999999999987653

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.86  E-value=4.1e-20  Score=125.63  Aligned_cols=167  Identities=26%  Similarity=0.355  Sum_probs=136.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCC--CCcccceeEeEEEEEEE-CCeEEEEEEEeCCChhhh-hhhhhhhhcCCc
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSL--ESKSTIGVEFATRSIRC-DDKIVKAQIWDTAGQERY-RAITSAYYRGAV   87 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-~~~~~~~~~~~d   87 (217)
                      ...+|+|+|..++|||+++..|+-.+...  .+.+|++. .+...+.. .+-.-.+.|+||.|...+ ..+-.+|+.-+|
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiED-iY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD   86 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIED-IYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD   86 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhh-heeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence            45799999999999999999988665443  45556543 33333333 444558899999997766 567788999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856           88 GALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA  166 (217)
Q Consensus        88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  166 (217)
                      ++++|||..+++||+.++.+-..+....+ ..+|+++.+||.|+.+..++..+.+..|+....+..+++++.+...+-+.
T Consensus        87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep  166 (198)
T KOG3883|consen   87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP  166 (198)
T ss_pred             eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence            99999999999999998777777766554 56899999999999988899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 027856          167 FTEVLTQIYRVVS  179 (217)
Q Consensus       167 ~~~i~~~~~~~~~  179 (217)
                      |..+...+.+-.+
T Consensus       167 f~~l~~rl~~pqs  179 (198)
T KOG3883|consen  167 FTYLASRLHQPQS  179 (198)
T ss_pred             HHHHHHhccCCcc
Confidence            9999887764433

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.85  E-value=3.4e-20  Score=147.65  Aligned_cols=184  Identities=22%  Similarity=0.244  Sum_probs=128.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhh---------h--hhh
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYR---------A--ITS   80 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~--~~~   80 (217)
                      ..++|+++|.|++|||||+|+|++..-...+ +..|++.......+....-.+.++||+|..+-.         +  ...
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~-~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~  255 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVS-DIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL  255 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEec-CCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence            5799999999999999999999998866544 444555555555554333588999999943211         1  123


Q ss_pred             hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH-----cCCcEEEE
Q 027856           81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAER-----ENTFFMET  155 (217)
Q Consensus        81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~  155 (217)
                      ..+..+|++++|+|++.+.+-++.. ....+..   .+.+++||+||||+.+.+....++.+.....     ..++.+.+
T Consensus       256 ~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i  331 (444)
T COG1160         256 KAIERADVVLLVIDATEGISEQDLR-IAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI  331 (444)
T ss_pred             hHHhhcCEEEEEEECCCCchHHHHH-HHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence            3567899999999999987755432 2223322   3889999999999987544445544433333     24679999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHHhhh----------hhccCCCCCCCCCCceeeec
Q 027856          156 SALESMNVENAFTEVLTQIYRVVSRK----------ALEIGDDPAALPKGQTINVG  201 (217)
Q Consensus       156 Sa~~~~~i~~~~~~i~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~  201 (217)
                      ||++|.+++.+|+.+.... +....+          +..+...||+..+|.++-+.
T Consensus       332 SA~~~~~i~~l~~~i~~~~-~~~~~ri~Ts~LN~~l~~a~~~~pP~~~~G~r~ki~  386 (444)
T COG1160         332 SALTGQGLDKLFEAIKEIY-ECATRRISTSLLNRVLEDAVAKHPPPVRYGRRLKIK  386 (444)
T ss_pred             EecCCCChHHHHHHHHHHH-HHhccccCHHHHHHHHHHHHHhCCCCccCCceEEEE
Confidence            9999999999999988544 333332          34445557777777776553

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.85  E-value=3.8e-20  Score=152.82  Aligned_cols=159  Identities=23%  Similarity=0.216  Sum_probs=107.6

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCChhh----------hhh-h
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER----------YRA-I   78 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~-~   78 (217)
                      ...++|+++|.+|+|||||+++|++..... ...+..+.+.....+..++  ..+.+|||||...          +.. .
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~  248 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR  248 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence            357999999999999999999999876432 2223333333333444444  4678999999432          111 1


Q ss_pred             hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHH-H----HcCCcEE
Q 027856           79 TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFA-E----RENTFFM  153 (217)
Q Consensus        79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~----~~~~~~~  153 (217)
                      ...++..+|++++|+|++++.+..+.. +...+..   .+.|+++|+||+|+.+...  .++..... .    ...++++
T Consensus       249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i~  322 (435)
T PRK00093        249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKT--MEEFKKELRRRLPFLDYAPIV  322 (435)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHH--HHHHHHHHHHhcccccCCCEE
Confidence            234678999999999999887765543 3333333   3789999999999874221  12222111 1    1357899


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHH
Q 027856          154 ETSALESMNVENAFTEVLTQIYRV  177 (217)
Q Consensus       154 ~~Sa~~~~~i~~~~~~i~~~~~~~  177 (217)
                      ++||++|.|++++|+.+.+...+.
T Consensus       323 ~~SA~~~~gv~~l~~~i~~~~~~~  346 (435)
T PRK00093        323 FISALTGQGVDKLLEAIDEAYENA  346 (435)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999998765543

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.85  E-value=2.4e-20  Score=153.80  Aligned_cols=151  Identities=23%  Similarity=0.207  Sum_probs=108.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCCC-CcccceeEeEEEEEEECCeEEEEEEEeCCCh--------hhhhhhhhhhhcC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSLE-SKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ--------ERYRAITSAYYRG   85 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--------~~~~~~~~~~~~~   85 (217)
                      +|+++|.+|+|||||+|+|++...... ..+..+.+.....+.+++  ..+.+|||||.        +.+......++..
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            589999999999999999999875332 223333444444555555  47899999995        4455566778899


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCC-cEEEEecCCCCCHH
Q 027856           86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENT-FFMETSALESMNVE  164 (217)
Q Consensus        86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~  164 (217)
                      +|++++|+|+.++.+..+ ..+...+..   .++|+++|+||+|+......    ..+ +...++ .++++||.+|.|+.
T Consensus        79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~  149 (429)
T TIGR03594        79 ADVILFVVDGREGLTPED-EEIAKWLRK---SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGIG  149 (429)
T ss_pred             CCEEEEEEeCCCCCCHHH-HHHHHHHHH---hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCChH
Confidence            999999999987654433 223333333   27899999999998653321    122 345565 69999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027856          165 NAFTEVLTQIYR  176 (217)
Q Consensus       165 ~~~~~i~~~~~~  176 (217)
                      ++++.+.+.+.+
T Consensus       150 ~ll~~i~~~l~~  161 (429)
T TIGR03594       150 DLLDAILELLPE  161 (429)
T ss_pred             HHHHHHHHhcCc
Confidence            999999877643

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.85  E-value=5.6e-20  Score=155.71  Aligned_cols=159  Identities=19%  Similarity=0.239  Sum_probs=113.5

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCc--CC-----CCC------cccceeEeEEE--EEEE---CCeEEEEEEEeCCCh
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNE--FS-----LES------KSTIGVEFATR--SIRC---DDKIVKAQIWDTAGQ   72 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~--~~-----~~~------~~~~~~~~~~~--~~~~---~~~~~~~~l~Dt~G~   72 (217)
                      +...+|+++|+.++|||||+.+|+...  +.     ..+      ..+.+++....  .+.+   ++..+.++||||||+
T Consensus         5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh   84 (600)
T PRK05433          5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH   84 (600)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence            456699999999999999999998632  11     111      01123333222  2222   455789999999999


Q ss_pred             hhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCc-
Q 027856           73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTF-  151 (217)
Q Consensus        73 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-  151 (217)
                      ..+...+..++..+|++++|+|+++....+....|.....    .+.|+++|+||+|+....  ......++....++. 
T Consensus        85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~----~~lpiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~  158 (600)
T PRK05433         85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NDLEIIPVLNKIDLPAAD--PERVKQEIEDVIGIDA  158 (600)
T ss_pred             HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEECCCCCccc--HHHHHHHHHHHhCCCc
Confidence            9999889999999999999999998766555555554332    378999999999986422  112223344444543 


Q ss_pred             --EEEEecCCCCCHHHHHHHHHHHHH
Q 027856          152 --FMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       152 --~~~~Sa~~~~~i~~~~~~i~~~~~  175 (217)
                        ++++||++|.|+.+++++|.+.+.
T Consensus       159 ~~vi~iSAktG~GI~~Ll~~I~~~lp  184 (600)
T PRK05433        159 SDAVLVSAKTGIGIEEVLEAIVERIP  184 (600)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHHhCc
Confidence              899999999999999999987764

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.85  E-value=6.1e-20  Score=151.64  Aligned_cols=148  Identities=23%  Similarity=0.173  Sum_probs=104.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCChhh--------hhhhhhhhhc
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER--------YRAITSAYYR   84 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~~   84 (217)
                      ++|+++|.+|+|||||+++|++..... ...+..+.+.....+.+++  ..+.+|||||...        +......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            589999999999999999999887532 2223334444455555555  6899999999765        3334456788


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCc-EEEEecCCCCCH
Q 027856           85 GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTF-FMETSALESMNV  163 (217)
Q Consensus        85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i  163 (217)
                      .+|++++|+|+.++.+..+. .....+...   +.|+++|+||+|+.+.    .....++ ...++. ++++||.+|.|+
T Consensus        80 ~ad~il~vvd~~~~~~~~~~-~~~~~l~~~---~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~gv  150 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADE-EIAKILRKS---NKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGRGI  150 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHH-HHHHHHHHc---CCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCCCH
Confidence            99999999999886544321 122222222   7899999999997541    1222222 345554 899999999999


Q ss_pred             HHHHHHHHH
Q 027856          164 ENAFTEVLT  172 (217)
Q Consensus       164 ~~~~~~i~~  172 (217)
                      .++|+.++.
T Consensus       151 ~~l~~~I~~  159 (435)
T PRK00093        151 GDLLDAILE  159 (435)
T ss_pred             HHHHHHHHh
Confidence            999999987

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.85  E-value=7.5e-20  Score=157.70  Aligned_cols=155  Identities=18%  Similarity=0.219  Sum_probs=111.5

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      ....+.|+++|+.++|||||+++|.+..+........+.+.....+.+++  ..++||||||++.|..++...+..+|++
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia  364 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV  364 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence            34678999999999999999999998777554433333333333444444  5789999999999999998889999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHH-------HHHHcC--CcEEEEecCCC
Q 027856           90 LLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATA-------FAEREN--TFFMETSALES  160 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-------~~~~~~--~~~~~~Sa~~~  160 (217)
                      |+|||+++....+..+.|    ......++|+++++||+|+.+..   .+....       +...++  ++++++||++|
T Consensus       365 ILVVdAddGv~~qT~e~i----~~a~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG  437 (787)
T PRK05306        365 VLVVAADDGVMPQTIEAI----NHAKAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTG  437 (787)
T ss_pred             EEEEECCCCCCHhHHHHH----HHHHhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCCCC
Confidence            999999885332222222    22222478999999999996421   222211       122233  67999999999


Q ss_pred             CCHHHHHHHHHHH
Q 027856          161 MNVENAFTEVLTQ  173 (217)
Q Consensus       161 ~~i~~~~~~i~~~  173 (217)
                      .|++++|++|...
T Consensus       438 ~GI~eLle~I~~~  450 (787)
T PRK05306        438 EGIDELLEAILLQ  450 (787)
T ss_pred             CCchHHHHhhhhh
Confidence            9999999998853

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.85  E-value=3.4e-20  Score=156.92  Aligned_cols=146  Identities=20%  Similarity=0.185  Sum_probs=109.0

Q ss_pred             cCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhh------hhhhh--cCCcEEEE
Q 027856           20 GDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAI------TSAYY--RGAVGALL   91 (217)
Q Consensus        20 G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------~~~~~--~~~d~ii~   91 (217)
                      |++|+|||||+|+|++........+..+.+.....+.+++  ..+.+|||||..++...      ...++  ..+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            8999999999999999876555556666666666666665  46799999998765432      23333  47899999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 027856           92 VYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~  171 (217)
                      |+|+++.+..   ..+..++.+   .+.|+++|+||+|+.+.+.+. .+.+.+.+..+++++++||++|.|++++++.+.
T Consensus        79 VvDat~ler~---l~l~~ql~~---~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~  151 (591)
T TIGR00437        79 VVDASNLERN---LYLTLQLLE---LGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR  151 (591)
T ss_pred             EecCCcchhh---HHHHHHHHh---cCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence            9999875321   222233322   479999999999997644443 346777888899999999999999999999998


Q ss_pred             HHH
Q 027856          172 TQI  174 (217)
Q Consensus       172 ~~~  174 (217)
                      +..
T Consensus       152 ~~~  154 (591)
T TIGR00437       152 KAI  154 (591)
T ss_pred             HHh
Confidence            753

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=4.5e-21  Score=134.81  Aligned_cols=179  Identities=32%  Similarity=0.538  Sum_probs=152.3

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++++++|..|.||||++++++-+.|...+.+|.+..........+...+.+..|||.|++.+..+...++-+..+.|
T Consensus         8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi   87 (216)
T KOG0096|consen    8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI   87 (216)
T ss_pred             cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence            46899999999999999999999999999999999999998888877766799999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856           91 LVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  170 (217)
                      +++|+..+.++.++..|...+...+. ++|+++++||.|..+..  .......+.+..++.|+++||+.+-|++.-|-|+
T Consensus        88 imFdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~L  164 (216)
T KOG0096|consen   88 IMFDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWL  164 (216)
T ss_pred             EEeeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHHH
Confidence            99999999999999999999988775 69999999999986632  2233445566778889999999999999999999


Q ss_pred             HHHHHHHHhhhhhccCCCCCCCCCC
Q 027856          171 LTQIYRVVSRKALEIGDDPAALPKG  195 (217)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~  195 (217)
                      .+.+...-+   ++..+.|+.+|+-
T Consensus       165 arKl~G~p~---Lefva~paLaPpe  186 (216)
T KOG0096|consen  165 ARKLTGDPS---LEFVAMPALAPPE  186 (216)
T ss_pred             hhhhcCCCC---eEEEeccccCCCe
Confidence            998876544   3444444455554

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.85  E-value=2.8e-19  Score=155.04  Aligned_cols=157  Identities=20%  Similarity=0.218  Sum_probs=110.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCChh----------hhhhh-h
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE----------RYRAI-T   79 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~-~   79 (217)
                      ..++|+++|.+|+|||||+++|++..... ...+..+.+.....+.+++.  .+.+|||||..          .+..+ .
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence            45899999999999999999999987532 22233445554555556664  56799999942          12221 2


Q ss_pred             hhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHH-H----cCCcEEE
Q 027856           80 SAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAE-R----ENTFFME  154 (217)
Q Consensus        80 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~----~~~~~~~  154 (217)
                      ...++.+|++++|+|+++..+.+... ++..+..   .++|+++|+||+|+.+...  .+..+.... .    ...++++
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~  600 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN  600 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence            34578999999999999988777654 3333333   3789999999999965221  222222222 1    2356799


Q ss_pred             EecCCCCCHHHHHHHHHHHHHH
Q 027856          155 TSALESMNVENAFTEVLTQIYR  176 (217)
Q Consensus       155 ~Sa~~~~~i~~~~~~i~~~~~~  176 (217)
                      +||++|.|++++|+.+.+.+.+
T Consensus       601 iSAktg~gv~~L~~~i~~~~~~  622 (712)
T PRK09518        601 LSAKTGWHTNRLAPAMQEALES  622 (712)
T ss_pred             EECCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999987765

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.85  E-value=2.9e-20  Score=148.06  Aligned_cols=151  Identities=23%  Similarity=0.168  Sum_probs=109.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCC-cccceeEeEEEEEEECCeEEEEEEEeCCChhh---------hhhhhhhhh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRCDDKIVKAQIWDTAGQER---------YRAITSAYY   83 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~~   83 (217)
                      ..|+++|.||+|||||+|||++....... .+..+.+.......+.+  ..+.++||+|.+.         ........+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            67999999999999999999999887644 23334444444444444  5699999999442         234456678


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcC-CcEEEEecCCCCC
Q 027856           84 RGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAEREN-TFFMETSALESMN  162 (217)
Q Consensus        84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~  162 (217)
                      ..+|++|||+|....-+..+ +.....++.   .++|+++|+||+|...     .++.....-.+| ..++.+||..|.|
T Consensus        82 ~eADvilfvVD~~~Git~~D-~~ia~~Lr~---~~kpviLvvNK~D~~~-----~e~~~~efyslG~g~~~~ISA~Hg~G  152 (444)
T COG1160          82 EEADVILFVVDGREGITPAD-EEIAKILRR---SKKPVILVVNKIDNLK-----AEELAYEFYSLGFGEPVPISAEHGRG  152 (444)
T ss_pred             HhCCEEEEEEeCCCCCCHHH-HHHHHHHHh---cCCCEEEEEEcccCch-----hhhhHHHHHhcCCCCceEeehhhccC
Confidence            89999999999988665443 233333442   3799999999999642     233333333445 4599999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027856          163 VENAFTEVLTQIY  175 (217)
Q Consensus       163 i~~~~~~i~~~~~  175 (217)
                      +.++++.++..+.
T Consensus       153 i~dLld~v~~~l~  165 (444)
T COG1160         153 IGDLLDAVLELLP  165 (444)
T ss_pred             HHHHHHHHHhhcC
Confidence            9999999998873

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.84  E-value=1e-19  Score=157.73  Aligned_cols=157  Identities=23%  Similarity=0.184  Sum_probs=107.1

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhh--------hhhhhhh
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER--------YRAITSA   81 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~   81 (217)
                      .....+|+++|.+|+|||||+|+|++....... .+.|.+..............+.+|||||.+.        +......
T Consensus       272 ~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~-~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~  350 (712)
T PRK09518        272 PKAVGVVAIVGRPNVGKSTLVNRILGRREAVVE-DTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQI  350 (712)
T ss_pred             cccCcEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHH
Confidence            344688999999999999999999987653322 2333433333333322235789999999642        3344556


Q ss_pred             hhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCC-cEEEEecCCC
Q 027856           82 YYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENT-FFMETSALES  160 (217)
Q Consensus        82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  160 (217)
                      ++..+|++++|+|+++..+..+ ..|...+..   .++|+++|+||+|+....    .....+. ..+. ..+++||++|
T Consensus       351 ~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~----~~~~~~~-~lg~~~~~~iSA~~g  421 (712)
T PRK09518        351 AVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE----YDAAEFW-KLGLGEPYPISAMHG  421 (712)
T ss_pred             HHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch----hhHHHHH-HcCCCCeEEEECCCC
Confidence            7899999999999987533221 245555543   389999999999985421    1222222 2232 3679999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q 027856          161 MNVENAFTEVLTQIYR  176 (217)
Q Consensus       161 ~~i~~~~~~i~~~~~~  176 (217)
                      .|+.++|+++++.+..
T Consensus       422 ~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        422 RGVGDLLDEALDSLKV  437 (712)
T ss_pred             CCchHHHHHHHHhccc
Confidence            9999999999987754

>cd00880 Era_like Era (E

Probab=99.84  E-value=5.5e-20  Score=131.03  Aligned_cols=151  Identities=19%  Similarity=0.161  Sum_probs=103.5

Q ss_pred             EEcCCCCCHHHHHHHHhhCcCC-CCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhh-------hhhhhhhcCCcEE
Q 027856           18 LIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYR-------AITSAYYRGAVGA   89 (217)
Q Consensus        18 v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~d~i   89 (217)
                      ++|++|+|||||++++++.... .......+............ ...+.+||+||.....       .....++..+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999987655 22223333333333333222 3588999999965443       2344578899999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHH---HHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856           90 LLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTE---DATAFAERENTFFMETSALESMNVENA  166 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~i~~~  166 (217)
                      ++|+|+++..+..... +......   .+.|+++|+||+|+.........   .........+.+++++|+.++.|+.++
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l  155 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLRE---RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL  155 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHHh---cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence            9999999887665543 3333332   48899999999998764322211   112223335678999999999999999


Q ss_pred             HHHHHHH
Q 027856          167 FTEVLTQ  173 (217)
Q Consensus       167 ~~~i~~~  173 (217)
                      ++++.+.
T Consensus       156 ~~~l~~~  162 (163)
T cd00880         156 REALIEA  162 (163)
T ss_pred             HHHHHhh
Confidence            9999864

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.84  E-value=2.9e-19  Score=135.38  Aligned_cols=151  Identities=25%  Similarity=0.256  Sum_probs=103.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhh-------hhhhhhhcCCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYR-------AITSAYYRGAV   87 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~d   87 (217)
                      +|+++|.+|+|||||+++|++........+..+.+.....+.+++  ..+++||+||..+..       ......++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            789999999999999999998764333223344445555555655  588999999964322       23345789999


Q ss_pred             EEEEEEECCChh-hHHHHHHHHHHH-----------------------------------------Hhh-----------
Q 027856           88 GALLVYDVTRHV-TFENVERWLKEL-----------------------------------------RDH-----------  114 (217)
Q Consensus        88 ~ii~v~d~~~~~-s~~~~~~~~~~l-----------------------------------------~~~-----------  114 (217)
                      ++++|+|++++. ..+.+...++.+                                         .++           
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~  159 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE  159 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence            999999998754 232222222111                                         000           


Q ss_pred             -----------c--CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHH
Q 027856          115 -----------T--DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       115 -----------~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  174 (217)
                                 .  ...+|+++|+||+|+..     .++...++..  ..++++||++|.|++++|+.+.+.+
T Consensus       160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                       0  12468999999999854     4444444443  3589999999999999999998754

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.84  E-value=2.4e-19  Score=155.15  Aligned_cols=153  Identities=16%  Similarity=0.142  Sum_probs=111.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhh----------hhhh
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAI----------TSAY   82 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------~~~~   82 (217)
                      .++|+++|++|+|||||+|+|++........  .+.+.......+......+.+|||||..++...          ...+
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~--pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNW--AGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccCCC--CCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            4789999999999999999999886543333  344444444444445578999999997654321          2223


Q ss_pred             h--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCC
Q 027856           83 Y--RGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALES  160 (217)
Q Consensus        83 ~--~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  160 (217)
                      +  ..+|++++|+|+++.+..   ..+..++.+.   +.|+++++||+|+.+.+.+ ..+.+++.+..+++++++|+.+|
T Consensus        81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~---giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g  153 (772)
T PRK09554         81 ILSGDADLLINVVDASNLERN---LYLTLQLLEL---GIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRG  153 (772)
T ss_pred             HhccCCCEEEEEecCCcchhh---HHHHHHHHHc---CCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecC
Confidence            2  478999999999886432   2344444443   7999999999998754444 34567777888999999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 027856          161 MNVENAFTEVLTQI  174 (217)
Q Consensus       161 ~~i~~~~~~i~~~~  174 (217)
                      +|++++++.+.+..
T Consensus       154 ~GIdeL~~~I~~~~  167 (772)
T PRK09554        154 RGIEALKLAIDRHQ  167 (772)
T ss_pred             CCHHHHHHHHHHhh
Confidence            99999999887654

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=3.1e-20  Score=128.83  Aligned_cols=160  Identities=22%  Similarity=0.363  Sum_probs=122.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcC-------CCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhc
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEF-------SLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYR   84 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   84 (217)
                      ..+.|+++|..++|||||+.++-..-.       .....+|.+.....  +.+.  ...+.+||..|++..+++|..+|.
T Consensus        16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~--i~v~--~~~l~fwdlgGQe~lrSlw~~yY~   91 (197)
T KOG0076|consen   16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGT--IEVC--NAPLSFWDLGGQESLRSLWKKYYW   91 (197)
T ss_pred             hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecc--eeec--cceeEEEEcCChHHHHHHHHHHHH
Confidence            457899999999999999987554211       12334455544333  3334  458899999999999999999999


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHH-HhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHH------HcCCcEEEEec
Q 027856           85 GAVGALLVYDVTRHVTFENVERWLKEL-RDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAE------RENTFFMETSA  157 (217)
Q Consensus        85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l-~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa  157 (217)
                      .+|++|+++|+.+++-++....-++.+ ....-.+.|+++.+||.|+.+  ....+++.....      +...++.++||
T Consensus        92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~--~~~~~El~~~~~~~e~~~~rd~~~~pvSa  169 (197)
T KOG0076|consen   92 LAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQN--AMEAAELDGVFGLAELIPRRDNPFQPVSA  169 (197)
T ss_pred             HhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhh--hhhHHHHHHHhhhhhhcCCccCccccchh
Confidence            999999999999998888776544444 333346899999999999976  444555544443      23466999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHH
Q 027856          158 LESMNVENAFTEVLTQIYRV  177 (217)
Q Consensus       158 ~~~~~i~~~~~~i~~~~~~~  177 (217)
                      .+|+|+.+-..|++..+..+
T Consensus       170 l~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  170 LTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hhcccHHHHHHHHHHHHhhc
Confidence            99999999999999988866

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.83  E-value=3.9e-22  Score=139.74  Aligned_cols=191  Identities=36%  Similarity=0.591  Sum_probs=156.9

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCe-EEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK-IVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      .++.+++.|+|.-|+|||+++.+++...++..|..|++.++.....+.++. .+.++|||..|++++..+...+++.+++
T Consensus        22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~  101 (229)
T KOG4423|consen   22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG  101 (229)
T ss_pred             hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence            578999999999999999999999999999999999998888887777554 4688999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhc----CCCCcEEEEEeCCCCCCccCC-CHHHHHHHHHHcCCc-EEEEecCCCCC
Q 027856           89 ALLVYDVTRHVTFENVERWLKELRDHT----DSNIVIMLVGNKADLRHLRAV-STEDATAFAERENTF-FMETSALESMN  162 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~----~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~-~~~~Sa~~~~~  162 (217)
                      .++|||+++..+++.+..|...+....    +...|+++..||+|....-.. .......+.+++|+. ++++|++.+.+
T Consensus       102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkn  181 (229)
T KOG4423|consen  102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKN  181 (229)
T ss_pred             eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccC
Confidence            999999999999999999999987644    245778999999998653222 235567788888876 99999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceeeecccCcc
Q 027856          163 VENAFTEVLTQIYRVVSRKALEIGDDPAALPKGQTINVGTKDDV  206 (217)
Q Consensus       163 i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (217)
                      +.+.-..+++.+.....+      ..+.....++-++++..+-.
T Consensus       182 i~Ea~r~lVe~~lvnd~q------~~~s~~~~~~~~~l~~~~~s  219 (229)
T KOG4423|consen  182 IPEAQRELVEKILVNDEQ------PIKSSAVDGDKINLRLMQPS  219 (229)
T ss_pred             hhHHHHHHHHHHHhhccC------CcccccccccccCccccCcc
Confidence            999999998887755432      22334556666666666633

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.83  E-value=1.8e-18  Score=121.71  Aligned_cols=156  Identities=26%  Similarity=0.405  Sum_probs=120.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCC--------CCcc--cceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhh
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSL--------ESKS--TIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSA   81 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~--------~~~~--~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~   81 (217)
                      ...+|+|.|+.++||||+++++.......        .+..  ..+.........+++. ..+.|++||||+++...|..
T Consensus         9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~-~~v~LfgtPGq~RF~fm~~~   87 (187)
T COG2229           9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDED-TGVHLFGTPGQERFKFMWEI   87 (187)
T ss_pred             cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCc-ceEEEecCCCcHHHHHHHHH
Confidence            46899999999999999999999876411        1111  1222222222333332 58899999999999999999


Q ss_pred             hhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHc--CCcEEEEecCC
Q 027856           82 YYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERE--NTFFMETSALE  159 (217)
Q Consensus        82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~  159 (217)
                      +.+++.++++++|.+.+..+ +....+..+....  .+|++|++||.|+.+  ..+.+...++....  ..+.|+.+|..
T Consensus        88 l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~--a~ppe~i~e~l~~~~~~~~vi~~~a~e  162 (187)
T COG2229          88 LSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFD--ALPPEKIREALKLELLSVPVIEIDATE  162 (187)
T ss_pred             HhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCC--CCCHHHHHHHHHhccCCCceeeeeccc
Confidence            99999999999999999888 5556666665553  399999999999987  45667676666654  78899999999


Q ss_pred             CCCHHHHHHHHHHH
Q 027856          160 SMNVENAFTEVLTQ  173 (217)
Q Consensus       160 ~~~i~~~~~~i~~~  173 (217)
                      +++..+.++.++..
T Consensus       163 ~~~~~~~L~~ll~~  176 (187)
T COG2229         163 GEGARDQLDVLLLK  176 (187)
T ss_pred             chhHHHHHHHHHhh
Confidence            99999999888765

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.82  E-value=6.5e-19  Score=148.32  Aligned_cols=157  Identities=18%  Similarity=0.136  Sum_probs=103.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcc----cceeEeEEEEEE------------ECCeEEEEEEEeCCChhhhh
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKS----TIGVEFATRSIR------------CDDKIVKAQIWDTAGQERYR   76 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~----~~~~~~~~~~~~------------~~~~~~~~~l~Dt~G~~~~~   76 (217)
                      ..-|+++|++++|||||+++|.+..+......    +.+.........            ++.....+.||||||++.|.
T Consensus         4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~   83 (590)
T TIGR00491         4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT   83 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence            35699999999999999999999876543222    222222111110            00111248899999999999


Q ss_pred             hhhhhhhcCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC----CCH--------HH-
Q 027856           77 AITSAYYRGAVGALLVYDVTR---HVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA----VST--------ED-  140 (217)
Q Consensus        77 ~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~----~~~--------~~-  140 (217)
                      .++..++..+|++++|+|+++   +.+++.+.    .+..   .+.|+++++||+|+.....    ...        .. 
T Consensus        84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v  156 (590)
T TIGR00491        84 NLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQV  156 (590)
T ss_pred             HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHH
Confidence            999999999999999999987   44443332    2222   3789999999999863100    000        00 


Q ss_pred             -----------HHHHHH------------Hc--CCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 027856          141 -----------ATAFAE------------RE--NTFFMETSALESMNVENAFTEVLTQIYR  176 (217)
Q Consensus       141 -----------~~~~~~------------~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  176 (217)
                                 ..++..            .+  ..+++++||++|+|+++++.++......
T Consensus       157 ~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~  217 (590)
T TIGR00491       157 QQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQ  217 (590)
T ss_pred             HHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHH
Confidence                       001111            11  3579999999999999999988765444

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.82  E-value=5.4e-19  Score=131.42  Aligned_cols=117  Identities=22%  Similarity=0.357  Sum_probs=86.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCC-cEEEEEE
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGA-VGALLVY   93 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~-d~ii~v~   93 (217)
                      +|+++|++|||||||+++|....+...+.++ ............+....+.+||+||+..++..+..+++.+ +++|+|+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence            6899999999999999999998776555332 2222222221123456899999999999998888889998 9999999


Q ss_pred             ECCCh-hhHHHHHHHHHHHHh---hcCCCCcEEEEEeCCCCCC
Q 027856           94 DVTRH-VTFENVERWLKELRD---HTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        94 d~~~~-~s~~~~~~~~~~l~~---~~~~~~p~ivv~nK~D~~~  132 (217)
                      |+++. .++..+..|+..+..   ....+.|+++++||.|+..
T Consensus        81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence            99987 666666555444322   1225899999999999864

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.81  E-value=2.2e-18  Score=127.02  Aligned_cols=148  Identities=20%  Similarity=0.178  Sum_probs=99.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCC--------------CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhh
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSL--------------ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAI   78 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   78 (217)
                      .++|+++|+.++|||||+++|+......              ......+++.......+......+.++||||+..+...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            4799999999999999999998641100              00112334444444445555568899999999888877


Q ss_pred             hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCccCC---CHHHHHHHHHHc-----C
Q 027856           79 TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV-IMLVGNKADLRHLRAV---STEDATAFAERE-----N  149 (217)
Q Consensus        79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~-----~  149 (217)
                      ....+..+|++++|+|+......+. ...+..+...   +.| +++++||+|+....+.   ..+++.++....     +
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~  157 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPMPQT-REHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN  157 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence            7778889999999999987543322 2333334332   566 7789999998642221   112344444443     3


Q ss_pred             CcEEEEecCCCCCHH
Q 027856          150 TFFMETSALESMNVE  164 (217)
Q Consensus       150 ~~~~~~Sa~~~~~i~  164 (217)
                      ++++++||.+|.|+.
T Consensus       158 v~iipiSa~~g~n~~  172 (195)
T cd01884         158 TPIVRGSALKALEGD  172 (195)
T ss_pred             CeEEEeeCccccCCC
Confidence            679999999999863

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.81  E-value=3.4e-19  Score=133.12  Aligned_cols=149  Identities=24%  Similarity=0.199  Sum_probs=94.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCCCC-----------------------------cccceeEeEEEEEEECCeEEEEE
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSLES-----------------------------KSTIGVEFATRSIRCDDKIVKAQ   65 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~   65 (217)
                      ||+++|++|+|||||+++|+...-....                             ....+++.......+......+.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            5899999999999999999864321110                             00022223333333333345889


Q ss_pred             EEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC----CHHHH
Q 027856           66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV----STEDA  141 (217)
Q Consensus        66 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~----~~~~~  141 (217)
                      +|||||++.+.......+..+|++++|+|++++..-.. ......+...  ...++++|+||+|+.+....    ...++
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~~  157 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVADY  157 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHHH
Confidence            99999998887666677899999999999987643222 1222222222  12457789999998642211    12234


Q ss_pred             HHHHHHcC---CcEEEEecCCCCCHHHH
Q 027856          142 TAFAEREN---TFFMETSALESMNVENA  166 (217)
Q Consensus       142 ~~~~~~~~---~~~~~~Sa~~~~~i~~~  166 (217)
                      ..+....+   .+++++||++|.|+.+.
T Consensus       158 ~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         158 LAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            44455555   34899999999998753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.81  E-value=1.4e-18  Score=125.15  Aligned_cols=152  Identities=19%  Similarity=0.235  Sum_probs=99.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh----------hhhhhhhhhhhc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ----------ERYRAITSAYYR   84 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~~~~~~~   84 (217)
                      .|+++|.+|+|||||++.+++........++.+.+.....+..++   .+.+|||||.          +.+......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            489999999999999999997665555555555555444444444   8899999993          223334444443


Q ss_pred             ---CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC--CHHHHHHHHH--HcCCcEEEEec
Q 027856           85 ---GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV--STEDATAFAE--RENTFFMETSA  157 (217)
Q Consensus        85 ---~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~--~~~~~~~~~Sa  157 (217)
                         ..+++++++|.....+.... .....+...   +.|+++++||+|+......  ..........  ....+++++|+
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~-~~~~~l~~~---~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa  153 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDL-EMLDWLEEL---GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSS  153 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHH-HHHHHHHHc---CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEec
Confidence               45788999998766432221 122223222   5899999999998542211  1122222222  33467999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 027856          158 LESMNVENAFTEVLTQ  173 (217)
Q Consensus       158 ~~~~~i~~~~~~i~~~  173 (217)
                      +++.++.+++++|.+.
T Consensus       154 ~~~~~~~~l~~~l~~~  169 (170)
T cd01876         154 LKGQGIDELRALIEKW  169 (170)
T ss_pred             CCCCCHHHHHHHHHHh
Confidence            9999999999999865

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.81  E-value=7e-19  Score=144.67  Aligned_cols=157  Identities=15%  Similarity=0.100  Sum_probs=104.1

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhC--cCCCC---------------------------CcccceeEeEEEEEEECCe
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRN--EFSLE---------------------------SKSTIGVEFATRSIRCDDK   60 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~   60 (217)
                      ....++|+++|+.++|||||+.+|+..  .....                           .....+.+.......+...
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~   83 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD   83 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence            345699999999999999999999862  11100                           0011233333444445555


Q ss_pred             EEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHH--HHHHHHHHhhcCCCCcEEEEEeCCCCCCccC---
Q 027856           61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENV--ERWLKELRDHTDSNIVIMLVGNKADLRHLRA---  135 (217)
Q Consensus        61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~--~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~---  135 (217)
                      .+.+.||||||++.|.......+..+|++++|+|+++..+....  ...+... ... ...++++++||+|+.+...   
T Consensus        84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~-~~~~iIVviNK~Dl~~~~~~~~  161 (426)
T TIGR00483        84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTL-GINQLIVAINKMDSVNYDEEEF  161 (426)
T ss_pred             CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHc-CCCeEEEEEEChhccCccHHHH
Confidence            57999999999998877777778899999999999987432111  1111122 222 1357899999999964221   


Q ss_pred             -CCHHHHHHHHHHcC-----CcEEEEecCCCCCHHHHHH
Q 027856          136 -VSTEDATAFAEREN-----TFFMETSALESMNVENAFT  168 (217)
Q Consensus       136 -~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~  168 (217)
                       ...+++.+++...+     .+++++||++|.|+.+.+.
T Consensus       162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~  200 (426)
T TIGR00483       162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE  200 (426)
T ss_pred             HHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence             11344555665554     5699999999999987543

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>COG2262 HflX GTPases [General function prediction only]

Probab=99.81  E-value=2e-18  Score=135.73  Aligned_cols=172  Identities=23%  Similarity=0.188  Sum_probs=130.9

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh---------hhhhhhh
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ---------ERYRAIT   79 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~---------~~~~~~~   79 (217)
                      .....+.|+++|.+|+|||||+|+|++.........+.+.+.....+...+. ..+.+.||.|.         +.|.+..
T Consensus       188 ~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g-~~vlLtDTVGFI~~LP~~LV~AFksTL  266 (411)
T COG2262         188 SRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDG-RKVLLTDTVGFIRDLPHPLVEAFKSTL  266 (411)
T ss_pred             cccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCC-ceEEEecCccCcccCChHHHHHHHHHH
Confidence            3456789999999999999999999988776666667777777777777653 47899999993         2344433


Q ss_pred             hhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCC
Q 027856           80 SAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALE  159 (217)
Q Consensus        80 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  159 (217)
                      + -...+|+++.|+|++++...+.++.....+.+.....+|+++|.||+|+.....     .........-..+.+||++
T Consensus       267 E-E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~~~v~iSA~~  340 (411)
T COG2262         267 E-EVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-----ILAELERGSPNPVFISAKT  340 (411)
T ss_pred             H-HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-----hhhhhhhcCCCeEEEEecc
Confidence            3 346799999999999998877777777777777666899999999999765322     1111222111699999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhhhhhccCC
Q 027856          160 SMNVENAFTEVLTQIYRVVSRKALEIGD  187 (217)
Q Consensus       160 ~~~i~~~~~~i~~~~~~~~~~~~~~~~~  187 (217)
                      |.|++.+.+.|...+..........++.
T Consensus       341 ~~gl~~L~~~i~~~l~~~~~~~~l~lp~  368 (411)
T COG2262         341 GEGLDLLRERIIELLSGLRTEVTLELPY  368 (411)
T ss_pred             CcCHHHHHHHHHHHhhhcccceEEEcCc
Confidence            9999999999999988777666555543

>PRK10218 GTP-binding protein; Provisional

Probab=99.81  E-value=3.2e-18  Score=144.58  Aligned_cols=160  Identities=15%  Similarity=0.166  Sum_probs=113.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhh--CcCCCCC------------cccceeEeEEEEEEECCeEEEEEEEeCCChhhhhh
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTR--NEFSLES------------KSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRA   77 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~   77 (217)
                      ...+|+++|+.++|||||+++|+.  +.+....            ..+.+++.......+....+.+.+|||||+..|..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            357899999999999999999997  3332211            22455666666666666668999999999999999


Q ss_pred             hhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC-CCHHHHHHHHHH-------cC
Q 027856           78 ITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA-VSTEDATAFAER-------EN  149 (217)
Q Consensus        78 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~-------~~  149 (217)
                      .+..+++.+|++++|+|+.+....+. ..++..+..   .+.|.++++||+|....+. ...+++......       ..
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~  159 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD  159 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence            99999999999999999987643332 223333333   3788999999999864321 112333333321       34


Q ss_pred             CcEEEEecCCCC----------CHHHHHHHHHHHHH
Q 027856          150 TFFMETSALESM----------NVENAFTEVLTQIY  175 (217)
Q Consensus       150 ~~~~~~Sa~~~~----------~i~~~~~~i~~~~~  175 (217)
                      ++++.+||.+|.          ++..+|+.|++.+.
T Consensus       160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP  195 (607)
T PRK10218        160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP  195 (607)
T ss_pred             CCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence            679999999998          47777777666554

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.80  E-value=1.1e-18  Score=147.39  Aligned_cols=158  Identities=16%  Similarity=0.198  Sum_probs=110.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC--cCCCCC------------cccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRN--EFSLES------------KSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAIT   79 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~   79 (217)
                      -+|+++|+.++|||||+++|+..  .+....            ....+++.......+....+.+.+|||||+..|...+
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev   81 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV   81 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence            47999999999999999999863  221111            1122344444433344445799999999999999888


Q ss_pred             hhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC-CCHHHHHHHHH-------HcCCc
Q 027856           80 SAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA-VSTEDATAFAE-------RENTF  151 (217)
Q Consensus        80 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~~  151 (217)
                      ..++..+|++++|+|+.+... .....|+..+...   ++|+++|+||+|+.+.+. ...+++..++.       ...++
T Consensus        82 ~~~l~~aD~alLVVDa~~G~~-~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p  157 (594)
T TIGR01394        82 ERVLGMVDGVLLLVDASEGPM-PQTRFVLKKALEL---GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP  157 (594)
T ss_pred             HHHHHhCCEEEEEEeCCCCCc-HHHHHHHHHHHHC---CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence            999999999999999987432 2234455555443   789999999999865321 11233333332       23567


Q ss_pred             EEEEecCCCC----------CHHHHHHHHHHHHH
Q 027856          152 FMETSALESM----------NVENAFTEVLTQIY  175 (217)
Q Consensus       152 ~~~~Sa~~~~----------~i~~~~~~i~~~~~  175 (217)
                      ++++||++|.          |+..+|+.|++.+.
T Consensus       158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP  191 (594)
T TIGR01394       158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP  191 (594)
T ss_pred             EEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence            9999999996          78888888887654

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.80  E-value=5.7e-19  Score=145.18  Aligned_cols=155  Identities=18%  Similarity=0.158  Sum_probs=102.1

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCC-----------------------------CcccceeEeEEEEEEECCeE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLE-----------------------------SKSTIGVEFATRSIRCDDKI   61 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~   61 (217)
                      ...++|+++|++++|||||+++|+...-...                             .....|++.......+....
T Consensus         4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~   83 (425)
T PRK12317          4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK   83 (425)
T ss_pred             CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence            4569999999999999999999985321100                             00123444444444555556


Q ss_pred             EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCCh--hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC----
Q 027856           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH--VTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA----  135 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~----  135 (217)
                      +.+.||||||++.|.......+..+|++++|+|++++  ..... ...+..+...  ...|+++++||+|+.+...    
T Consensus        84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~-~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~  160 (425)
T PRK12317         84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQT-REHVFLARTL--GINQLIVAINKMDAVNYDEKRYE  160 (425)
T ss_pred             eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcch-HHHHHHHHHc--CCCeEEEEEEccccccccHHHHH
Confidence            7999999999988876665667899999999999873  21111 1222222222  1246899999999965221    


Q ss_pred             CCHHHHHHHHHHcC-----CcEEEEecCCCCCHHHHHH
Q 027856          136 VSTEDATAFAEREN-----TFFMETSALESMNVENAFT  168 (217)
Q Consensus       136 ~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~  168 (217)
                      ...+++.+++...+     .+++++||++|.|+.+.++
T Consensus       161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~  198 (425)
T PRK12317        161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE  198 (425)
T ss_pred             HHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence            11234445554444     4699999999999987553

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.80  E-value=2.6e-18  Score=129.87  Aligned_cols=166  Identities=20%  Similarity=0.185  Sum_probs=114.9

Q ss_pred             CCCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChh------------
Q 027856            6 ADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE------------   73 (217)
Q Consensus         6 ~~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~------------   73 (217)
                      .+.+....++|+|+|.||+|||||.|.+++.+..+......++.....-+-..+. .++.|+||||..            
T Consensus        65 de~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~e-TQlvf~DTPGlvs~~~~r~~~l~~  143 (379)
T KOG1423|consen   65 DEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGE-TQLVFYDTPGLVSKKMHRRHHLMM  143 (379)
T ss_pred             CchhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCc-eEEEEecCCcccccchhhhHHHHH
Confidence            3445677899999999999999999999999999888777777666666644444 699999999921            


Q ss_pred             hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCcc-------------CCC---
Q 027856           74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLR-------------AVS---  137 (217)
Q Consensus        74 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-------------~~~---  137 (217)
                      .+.......+..+|.+++|+|+++....-. ...+..+..+.  .+|-++|+||.|....+             ++.   
T Consensus       144 s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~k  220 (379)
T KOG1423|consen  144 SVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLK  220 (379)
T ss_pred             HhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchhh
Confidence            111223345678999999999997433211 23444454443  78889999999975321             121   


Q ss_pred             HHHHHHHHHHc---------C---C-cEEEEecCCCCCHHHHHHHHHHHHH
Q 027856          138 TEDATAFAERE---------N---T-FFMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       138 ~~~~~~~~~~~---------~---~-~~~~~Sa~~~~~i~~~~~~i~~~~~  175 (217)
                      .+..+++....         |   + .+|.+||++|+|++++-++++..+.
T Consensus       221 l~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~  271 (379)
T KOG1423|consen  221 LEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP  271 (379)
T ss_pred             hhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence            11112222211         1   2 2899999999999999999886543

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.80  E-value=1.6e-18  Score=141.40  Aligned_cols=161  Identities=21%  Similarity=0.210  Sum_probs=104.3

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCC---CCc--ccceeEeEEEE------------EEE----CC------eEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSL---ESK--STIGVEFATRS------------IRC----DD------KIVK   63 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~---~~~--~~~~~~~~~~~------------~~~----~~------~~~~   63 (217)
                      ...++|+++|+.++|||||+++|.+.....   +..  .|....+....            +..    +.      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            356899999999999999999997643211   100  11111110000            000    11      1357


Q ss_pred             EEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC--CHHH
Q 027856           64 AQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV-TFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV--STED  140 (217)
Q Consensus        64 ~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~  140 (217)
                      +.+|||||++.|...+......+|++++|+|++++. ..+. ...+..+...  ...|+++++||+|+.+....  ..++
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt-~e~l~~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~  158 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQT-KEHLMALEII--GIKNIVIVQNKIDLVSKEKALENYEE  158 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccch-HHHHHHHHHc--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence            899999999999888888888999999999998643 1111 1222222222  13568999999999753211  1233


Q ss_pred             HHHHHHHc---CCcEEEEecCCCCCHHHHHHHHHHHH
Q 027856          141 ATAFAERE---NTFFMETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       141 ~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~i~~~~  174 (217)
                      +..+....   +++++++||++|.|+++++++|...+
T Consensus       159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l  195 (406)
T TIGR03680       159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI  195 (406)
T ss_pred             HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence            34444332   56799999999999999999998754

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.80  E-value=2.5e-18  Score=118.37  Aligned_cols=135  Identities=24%  Similarity=0.263  Sum_probs=99.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCC----hhhhhhhhhhhhcCCcEEE
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAG----QERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----~~~~~~~~~~~~~~~d~ii   90 (217)
                      ||+++|+.|+|||||+++|.+...  .+..|..+.       +.+     .++||||    ...+.+........+|.++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~-------~~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~   68 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIE-------YYD-----NTIDTPGEYIENPRFYHALIVTAQDADVVL   68 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeE-------ecc-----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence            799999999999999999998764  343443322       111     3699999    4455555555667999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCc-EEEEecCCCCCHHHHHHH
Q 027856           91 LVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTE  169 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~  169 (217)
                      ++.|++++.+.-. ..+    ...  -.+|+|=|+||+|+.. +....+.++++.+..|+. +|++|+.+|+|++++.+.
T Consensus        69 ll~dat~~~~~~p-P~f----a~~--f~~pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~  140 (143)
T PF10662_consen   69 LLQDATEPRSVFP-PGF----ASM--FNKPVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY  140 (143)
T ss_pred             EEecCCCCCccCC-chh----hcc--cCCCEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence            9999998753210 111    122  1689999999999984 234567777888888866 899999999999999887


Q ss_pred             HH
Q 027856          170 VL  171 (217)
Q Consensus       170 i~  171 (217)
                      |-
T Consensus       141 L~  142 (143)
T PF10662_consen  141 LE  142 (143)
T ss_pred             Hh
Confidence            63

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.80  E-value=5.6e-18  Score=143.86  Aligned_cols=155  Identities=19%  Similarity=0.141  Sum_probs=104.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc---CCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE---FSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      -|+++|+.++|||||+++|++..   +..+....++++.....+...+ ...+.+|||||++.|.......+..+|++++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            48999999999999999999743   3333323334433333332222 2358999999999998877788899999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCccCC--CHHHHHHHHHHcC---CcEEEEecCCCCCHHH
Q 027856           92 VYDVTRHVTFENVERWLKELRDHTDSNIV-IMLVGNKADLRHLRAV--STEDATAFAEREN---TFFMETSALESMNVEN  165 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~  165 (217)
                      |+|+++....+..+ .+..+...   +.| +++|+||+|+.+....  ..+++.++....+   .+++++||++|.|+++
T Consensus        81 VVda~eg~~~qT~e-hl~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~  156 (614)
T PRK10512         81 VVACDDGVMAQTRE-HLAILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA  156 (614)
T ss_pred             EEECCCCCcHHHHH-HHHHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence            99998743222211 12223222   455 5799999999753221  1233444444443   6799999999999999


Q ss_pred             HHHHHHHHH
Q 027856          166 AFTEVLTQI  174 (217)
Q Consensus       166 ~~~~i~~~~  174 (217)
                      +++.|....
T Consensus       157 L~~~L~~~~  165 (614)
T PRK10512        157 LREHLLQLP  165 (614)
T ss_pred             HHHHHHHhh
Confidence            999987644

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.80  E-value=8.5e-19  Score=117.71  Aligned_cols=157  Identities=22%  Similarity=0.340  Sum_probs=117.1

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      +...++|+++|-.++|||||++.|.+...... .+|.|..  ...+.+++. +.+++||..|+...+..|.+||.++|++
T Consensus        14 t~rEirilllGldnAGKTT~LKqL~sED~~hl-tpT~GFn--~k~v~~~g~-f~LnvwDiGGqr~IRpyWsNYyenvd~l   89 (185)
T KOG0074|consen   14 TRREIRILLLGLDNAGKTTFLKQLKSEDPRHL-TPTNGFN--TKKVEYDGT-FHLNVWDIGGQRGIRPYWSNYYENVDGL   89 (185)
T ss_pred             CcceEEEEEEecCCCcchhHHHHHccCChhhc-cccCCcc--eEEEeecCc-EEEEEEecCCccccchhhhhhhhccceE
Confidence            35679999999999999999999987764333 3565544  445555554 6999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcC-----CcEEEEecCCCCCH
Q 027856           90 LLVYDVTRHVTFENVER-WLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAEREN-----TFFMETSALESMNV  163 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i  163 (217)
                      |||+|..+..-++++.. +.+.+....-...|+++..||.|+..  ....++....+...+     .-+-++||.+++++
T Consensus        90 IyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllt--aa~~eeia~klnl~~lrdRswhIq~csals~eg~  167 (185)
T KOG0074|consen   90 IYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLT--AAKVEEIALKLNLAGLRDRSWHIQECSALSLEGS  167 (185)
T ss_pred             EEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHh--hcchHHHHHhcchhhhhhceEEeeeCccccccCc
Confidence            99999888877877644 44444444446789999999999865  233333332222222     22678999999999


Q ss_pred             HHHHHHHHH
Q 027856          164 ENAFTEVLT  172 (217)
Q Consensus       164 ~~~~~~i~~  172 (217)
                      .+-.+|+.+
T Consensus       168 ~dg~~wv~s  176 (185)
T KOG0074|consen  168 TDGSDWVQS  176 (185)
T ss_pred             cCcchhhhc
Confidence            888888764

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.80  E-value=2.5e-18  Score=137.41  Aligned_cols=154  Identities=19%  Similarity=0.188  Sum_probs=110.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCC-cccceeEeEEEEEEECCeEEEEEEEeCCChhhhh--------hhhhhh
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYR--------AITSAY   82 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~   82 (217)
                      ..++++++|.||+|||||+|+|++.....+. .+.++-+.....+.++|  +.+.++||+|.++-.        ......
T Consensus       216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~  293 (454)
T COG0486         216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA  293 (454)
T ss_pred             cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence            4689999999999999999999999877654 33344444445555566  789999999954321        223346


Q ss_pred             hcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCC
Q 027856           83 YRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMN  162 (217)
Q Consensus        83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  162 (217)
                      +.++|.+++|+|++.+.+-.+. ..+.    ....+.|+++|.||.|+......     .......+..++.+|+++|+|
T Consensus       294 i~~ADlvL~v~D~~~~~~~~d~-~~~~----~~~~~~~~i~v~NK~DL~~~~~~-----~~~~~~~~~~~i~iSa~t~~G  363 (454)
T COG0486         294 IEEADLVLFVLDASQPLDKEDL-ALIE----LLPKKKPIIVVLNKADLVSKIEL-----ESEKLANGDAIISISAKTGEG  363 (454)
T ss_pred             HHhCCEEEEEEeCCCCCchhhH-HHHH----hcccCCCEEEEEechhccccccc-----chhhccCCCceEEEEecCccC
Confidence            7899999999999986332221 1222    33357999999999999774321     111222344699999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 027856          163 VENAFTEVLTQIYRV  177 (217)
Q Consensus       163 i~~~~~~i~~~~~~~  177 (217)
                      ++.+.+.|.+.+...
T Consensus       364 l~~L~~~i~~~~~~~  378 (454)
T COG0486         364 LDALREAIKQLFGKG  378 (454)
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999988777755

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.79  E-value=2.8e-18  Score=140.00  Aligned_cols=163  Identities=22%  Similarity=0.251  Sum_probs=103.3

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCC---cccceeEeE--EEEE------------E----EC--C----eE
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLES---KSTIGVEFA--TRSI------------R----CD--D----KI   61 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~---~~~~~~~~~--~~~~------------~----~~--~----~~   61 (217)
                      +....++|+++|+.++|||||+.+|.+.......   ....+....  ...+            .    ++  +    ..
T Consensus         5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (411)
T PRK04000          5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL   84 (411)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence            3455699999999999999999999764221111   111111111  0000            0    00  1    12


Q ss_pred             EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC--CH
Q 027856           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV-TFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV--ST  138 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~  138 (217)
                      ..+.||||||++.+..........+|++++|+|++++. ..+.... +..+...  ...|+++|+||+|+.+....  ..
T Consensus        85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~-l~~l~~~--~i~~iiVVlNK~Dl~~~~~~~~~~  161 (411)
T PRK04000         85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEH-LMALDII--GIKNIVIVQNKIDLVSKERALENY  161 (411)
T ss_pred             cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHH-HHHHHHc--CCCcEEEEEEeeccccchhHHHHH
Confidence            57899999999988776666667889999999999653 2222222 2222222  13468999999999753321  12


Q ss_pred             HHHHHHHHH---cCCcEEEEecCCCCCHHHHHHHHHHHH
Q 027856          139 EDATAFAER---ENTFFMETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       139 ~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~  174 (217)
                      +++..++..   .+.+++++||++|.|++++++.|...+
T Consensus       162 ~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l  200 (411)
T PRK04000        162 EQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI  200 (411)
T ss_pred             HHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence            334444433   246799999999999999999988755

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.79  E-value=1.5e-17  Score=119.59  Aligned_cols=160  Identities=20%  Similarity=0.244  Sum_probs=114.4

Q ss_pred             CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCC----------hhhhhh
Q 027856            8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAG----------QERYRA   77 (217)
Q Consensus         8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~   77 (217)
                      -+.+..+-|+++|.+|+|||||||+|+++.--.....|+|.+.....+.+++.   +.++|.||          .+.+..
T Consensus        19 ~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~   95 (200)
T COG0218          19 YPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKK   95 (200)
T ss_pred             CCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHH
Confidence            35567789999999999999999999998755556678888888888877774   78999999          344455


Q ss_pred             hhhhhhc---CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH----cCC
Q 027856           78 ITSAYYR---GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAER----ENT  150 (217)
Q Consensus        78 ~~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~~  150 (217)
                      ....|+.   +..++++++|+..+..-.+. ..++.+...   ++|+++++||+|.....+... .+...+..    ...
T Consensus        96 ~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~~---~i~~~vv~tK~DKi~~~~~~k-~l~~v~~~l~~~~~~  170 (200)
T COG0218          96 LIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLEL---GIPVIVVLTKADKLKKSERNK-QLNKVAEELKKPPPD  170 (200)
T ss_pred             HHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHHc---CCCeEEEEEccccCChhHHHH-HHHHHHHHhcCCCCc
Confidence            5555553   45788999999877554332 344444443   899999999999876433221 11222222    222


Q ss_pred             c--EEEEecCCCCCHHHHHHHHHHHHH
Q 027856          151 F--FMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       151 ~--~~~~Sa~~~~~i~~~~~~i~~~~~  175 (217)
                      .  ++.+|+..+.|++++...|.+.+.
T Consensus       171 ~~~~~~~ss~~k~Gi~~l~~~i~~~~~  197 (200)
T COG0218         171 DQWVVLFSSLKKKGIDELKAKILEWLK  197 (200)
T ss_pred             cceEEEEecccccCHHHHHHHHHHHhh
Confidence            2  788999999999999998887664

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.79  E-value=8.5e-18  Score=127.58  Aligned_cols=113  Identities=19%  Similarity=0.205  Sum_probs=81.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCC--------CC--------cccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhh
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSL--------ES--------KSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAI   78 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~--------~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   78 (217)
                      +|+++|+.|+|||||+++|+...-..        ..        ....+.+.......+.....++.+|||||+..+...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            58999999999999999998642110        00        011222233333334444578999999999988888


Q ss_pred             hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027856           79 TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~  131 (217)
                      +..+++.+|++++|+|+++..... ...++..+...   +.|+++++||+|+.
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~~-~~~~~~~~~~~---~~P~iivvNK~D~~  129 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQAQ-TRILWRLLRKL---NIPTIIFVNKIDRA  129 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCHH-HHHHHHHHHHc---CCCEEEEEECcccc
Confidence            888999999999999998865432 34455555443   78999999999985

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.78  E-value=1e-17  Score=141.57  Aligned_cols=157  Identities=17%  Similarity=0.159  Sum_probs=102.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcc----cceeEeEEEEEEE--CCeEE----------EEEEEeCCChhhh
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKS----TIGVEFATRSIRC--DDKIV----------KAQIWDTAGQERY   75 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~----------~~~l~Dt~G~~~~   75 (217)
                      ..+.|+++|++++|||||+++|.+.........    +.+..........  .+...          .+.||||||++.|
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f   84 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF   84 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence            456799999999999999999987754332221    2222221111100  01111          2689999999999


Q ss_pred             hhhhhhhhcCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCc-c---CCCH--------H-
Q 027856           76 RAITSAYYRGAVGALLVYDVTR---HVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL-R---AVST--------E-  139 (217)
Q Consensus        76 ~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~-~---~~~~--------~-  139 (217)
                      ..++...+..+|++++|+|+++   +.+++.+.    .+..   .+.|+++++||+|+... .   ....        . 
T Consensus        85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~  157 (586)
T PRK04004         85 TNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR  157 (586)
T ss_pred             HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence            9888888899999999999987   55544432    2222   37899999999998521 0   0000        0 


Q ss_pred             ----------HHHHHHHH---------------cCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027856          140 ----------DATAFAER---------------ENTFFMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       140 ----------~~~~~~~~---------------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  175 (217)
                                +.......               ...+++++||.+|+|+.+++..+...+.
T Consensus       158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~  218 (586)
T PRK04004        158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQ  218 (586)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHH
Confidence                      01011111               1256999999999999999988875443

>cd04167 Snu114p Snu114p subfamily

Probab=99.78  E-value=5.2e-18  Score=127.24  Aligned_cols=113  Identities=27%  Similarity=0.314  Sum_probs=80.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCCCC-----------------cccceeEeEE--EEEEE---CCeEEEEEEEeCCCh
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSLES-----------------KSTIGVEFAT--RSIRC---DDKIVKAQIWDTAGQ   72 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~-----------------~~~~~~~~~~--~~~~~---~~~~~~~~l~Dt~G~   72 (217)
                      +|+++|+.|+|||||+++|+........                 ....+.+...  ..+.+   ++..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            6899999999999999999975433210                 0111222211  22212   355689999999999


Q ss_pred             hhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027856           73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        73 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~  131 (217)
                      ..+......++..+|++++|+|+++..+... ..++..+..   .+.|+++|+||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence            9888888888999999999999987765533 334444332   268999999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK12736 elongation factor Tu; Reviewed

Probab=99.78  E-value=1.4e-17  Score=135.35  Aligned_cols=148  Identities=16%  Similarity=0.138  Sum_probs=98.7

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCC--------------CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhh
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSL--------------ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY   75 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   75 (217)
                      ....++|+++|+.++|||||+++|++.....              ......+.+.......+......+.+|||||+++|
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence            4567999999999999999999998732100              00112344444445555545568899999999988


Q ss_pred             hhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCccCCC---HHHHHHHHHHcC--
Q 027856           76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV-IMLVGNKADLRHLRAVS---TEDATAFAEREN--  149 (217)
Q Consensus        76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~--  149 (217)
                      .......+..+|++++|+|+......+.. ..+..+...   ++| +++++||+|+.+..+..   .+++..+....+  
T Consensus        89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t~-~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~  164 (394)
T PRK12736         89 VKNMITGAAQMDGAILVVAATDGPMPQTR-EHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFP  164 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCchhHH-HHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCC
Confidence            87777777899999999999875332222 222333332   677 67889999986432211   123444444443  


Q ss_pred             ---CcEEEEecCCCC
Q 027856          150 ---TFFMETSALESM  161 (217)
Q Consensus       150 ---~~~~~~Sa~~~~  161 (217)
                         ++++++||++|.
T Consensus       165 ~~~~~ii~vSa~~g~  179 (394)
T PRK12736        165 GDDIPVIRGSALKAL  179 (394)
T ss_pred             cCCccEEEeeccccc
Confidence               579999999983

>PRK12735 elongation factor Tu; Reviewed

Probab=99.77  E-value=3e-17  Score=133.62  Aligned_cols=149  Identities=16%  Similarity=0.153  Sum_probs=98.0

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcC-----C---------CCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhh
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEF-----S---------LESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY   75 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~-----~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   75 (217)
                      ....++|+++|++++|||||+++|++...     .         .......+++.......+......+.|+||||++.|
T Consensus         9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (396)
T PRK12735          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY   88 (396)
T ss_pred             CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence            45679999999999999999999996210     0         000112334444444445444568899999999988


Q ss_pred             hhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCccCC---CHHHHHHHHHHcC--
Q 027856           76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAV---STEDATAFAEREN--  149 (217)
Q Consensus        76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-vv~nK~D~~~~~~~---~~~~~~~~~~~~~--  149 (217)
                      .......+..+|++++|+|+.+....+. ...+..+..   .++|.+ +++||+|+.+..+.   ...++..+....+  
T Consensus        89 ~~~~~~~~~~aD~~llVvda~~g~~~qt-~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~  164 (396)
T PRK12735         89 VKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP  164 (396)
T ss_pred             HHHHHhhhccCCEEEEEEECCCCCchhH-HHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence            8777777889999999999987543222 223333332   267755 57999999642211   1124444554433  


Q ss_pred             ---CcEEEEecCCCCC
Q 027856          150 ---TFFMETSALESMN  162 (217)
Q Consensus       150 ---~~~~~~Sa~~~~~  162 (217)
                         ++++++||.+|.|
T Consensus       165 ~~~~~ii~~Sa~~g~n  180 (396)
T PRK12735        165 GDDTPIIRGSALKALE  180 (396)
T ss_pred             cCceeEEecchhcccc
Confidence               5799999999853

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.76  E-value=1.1e-17  Score=125.99  Aligned_cols=147  Identities=18%  Similarity=0.139  Sum_probs=93.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCC----------------------------C-CCcccceeEeEEEEEEECCeEEEEE
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFS----------------------------L-ESKSTIGVEFATRSIRCDDKIVKAQ   65 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~----------------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~   65 (217)
                      +|+++|+.++|||||+.+|+...-.                            . ......+++.......+......+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            5899999999999999999742110                            0 0001123333333344444457899


Q ss_pred             EEeCCChhhhhhhhhhhhcCCcEEEEEEECCChh-------hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCc--cCC
Q 027856           66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV-------TFENVERWLKELRDHTDSNIVIMLVGNKADLRHL--RAV  136 (217)
Q Consensus        66 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-------s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~--~~~  136 (217)
                      +|||||+..+...+...+..+|++++|+|+++..       ..+....+ ......  ...|+++++||+|+...  .+.
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~iiivvNK~Dl~~~~~~~~  157 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLARTL--GVKQLIVAVNKMDDVTVNWSEE  157 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHHc--CCCeEEEEEEccccccccccHH
Confidence            9999999888777777788999999999998842       11222222 222222  13689999999999731  111


Q ss_pred             CH----HHHHHHHHHcC-----CcEEEEecCCCCCHH
Q 027856          137 ST----EDATAFAEREN-----TFFMETSALESMNVE  164 (217)
Q Consensus       137 ~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~  164 (217)
                      ..    +++.......+     .+++++||++|.|+.
T Consensus       158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            11    22222334433     569999999999986

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.76  E-value=3.8e-18  Score=138.65  Aligned_cols=168  Identities=26%  Similarity=0.285  Sum_probs=125.7

Q ss_pred             CCCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcC
Q 027856            6 ADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG   85 (217)
Q Consensus         6 ~~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   85 (217)
                      ++......+||+++|+.|+||||||-.|+...+....++-..  .......+....+...++|++..+..+.....-+++
T Consensus         2 ~~~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~--~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~Eirk   79 (625)
T KOG1707|consen    2 SDDETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP--RILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRK   79 (625)
T ss_pred             CCccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCC--ccccCCccCcCcCceEEEecccccchhHHHHHHHhh
Confidence            344556789999999999999999999999998765543321  111123344444678999998766655556677899


Q ss_pred             CcEEEEEEECCChhhHHHHH-HHHHHHHhhcC--CCCcEEEEEeCCCCCCccCCCHHH-HHHHHHHc-CCc-EEEEecCC
Q 027856           86 AVGALLVYDVTRHVTFENVE-RWLKELRDHTD--SNIVIMLVGNKADLRHLRAVSTED-ATAFAERE-NTF-FMETSALE  159 (217)
Q Consensus        86 ~d~ii~v~d~~~~~s~~~~~-~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~-~~~-~~~~Sa~~  159 (217)
                      +|+++++|+++++.|.+.+. .|+..+++..+  ..+|+|+|+||+|.......+.+. .......+ .+. .|+|||++
T Consensus        80 A~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~  159 (625)
T KOG1707|consen   80 ADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALT  159 (625)
T ss_pred             cCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhh
Confidence            99999999999999999985 69999998875  478999999999997654442232 22222222 233 89999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 027856          160 SMNVENAFTEVLTQIY  175 (217)
Q Consensus       160 ~~~i~~~~~~i~~~~~  175 (217)
                      -.++.++|....+.+.
T Consensus       160 ~~n~~e~fYyaqKaVi  175 (625)
T KOG1707|consen  160 LANVSELFYYAQKAVI  175 (625)
T ss_pred             hhhhHhhhhhhhheee
Confidence            9999999998776655

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.76  E-value=2e-17  Score=125.67  Aligned_cols=156  Identities=19%  Similarity=0.219  Sum_probs=119.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhh-------hhhhcC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAIT-------SAYYRG   85 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~~~   85 (217)
                      ...|.+||.||+|||||++++....-.....+.++......++.+++.. ++.+-|.||..+-.++.       ...+..
T Consensus       196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER  274 (366)
T KOG1489|consen  196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIER  274 (366)
T ss_pred             ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHh
Confidence            4568999999999999999999987665555666777777777776654 59999999944332222       234567


Q ss_pred             CcEEEEEEECCCh---hhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCc-EEEEecCC
Q 027856           86 AVGALLVYDVTRH---VTFENVERWLKELRDHTD--SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTF-FMETSALE  159 (217)
Q Consensus        86 ~d~ii~v~d~~~~---~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~  159 (217)
                      ++.++||+|++..   ..|+.++.+..++..+..  .+.|.++|+||+|+.+.   ....+.++++...-+ ++++||+.
T Consensus       275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea---e~~~l~~L~~~lq~~~V~pvsA~~  351 (366)
T KOG1489|consen  275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA---EKNLLSSLAKRLQNPHVVPVSAKS  351 (366)
T ss_pred             hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH---HHHHHHHHHHHcCCCcEEEeeecc
Confidence            8999999999998   778888888777766554  47899999999998531   122246667776545 99999999


Q ss_pred             CCCHHHHHHHHHH
Q 027856          160 SMNVENAFTEVLT  172 (217)
Q Consensus       160 ~~~i~~~~~~i~~  172 (217)
                      ++++.++++.|-+
T Consensus       352 ~egl~~ll~~lr~  364 (366)
T KOG1489|consen  352 GEGLEELLNGLRE  364 (366)
T ss_pred             ccchHHHHHHHhh
Confidence            9999998887654

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.76  E-value=3.1e-17  Score=133.52  Aligned_cols=148  Identities=16%  Similarity=0.135  Sum_probs=98.2

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcC------C-------C-CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhh
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEF------S-------L-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY   75 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~------~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   75 (217)
                      ....++|+++|+.++|||||+++|++...      .       . ......+++.....+.+......+.||||||++.|
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f   88 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence            45679999999999999999999984310      0       0 00112334444455555555578899999999988


Q ss_pred             hhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCccCCC---HHHHHHHHHHcC--
Q 027856           76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVS---TEDATAFAEREN--  149 (217)
Q Consensus        76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-vv~nK~D~~~~~~~~---~~~~~~~~~~~~--  149 (217)
                      ..........+|++++|+|+......+.. ..+..+...   ++|.+ +++||+|+.+..+..   .+++..++...+  
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~-e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~  164 (394)
T TIGR00485        89 VKNMITGAAQMDGAILVVSATDGPMPQTR-EHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFP  164 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            87666667889999999999874332222 222223322   66655 689999987532211   234555555544  


Q ss_pred             ---CcEEEEecCCCC
Q 027856          150 ---TFFMETSALESM  161 (217)
Q Consensus       150 ---~~~~~~Sa~~~~  161 (217)
                         ++++++||.+|.
T Consensus       165 ~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       165 GDDTPIIRGSALKAL  179 (394)
T ss_pred             ccCccEEECcccccc
Confidence               679999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.76  E-value=2.9e-17  Score=136.63  Aligned_cols=155  Identities=17%  Similarity=0.195  Sum_probs=118.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh------hhhhhhhhhhh--c
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ------ERYRAITSAYY--R   84 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~------~~~~~~~~~~~--~   84 (217)
                      ..+|+++|+||+|||||.|+|+|........+..+.+.....+.+.+.  .++++|.||-      ...+.....++  .
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--~i~ivDLPG~YSL~~~S~DE~Var~~ll~~   80 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--EIEIVDLPGTYSLTAYSEDEKVARDFLLEG   80 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--eEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence            356999999999999999999999987777788888888888877775  5899999992      12223333333  4


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHH
Q 027856           85 GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVE  164 (217)
Q Consensus        85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  164 (217)
                      ..|+++-|+|+++.+-  ++ ++.-++.+   -+.|++++.|++|..+.+.+.. +.+++.+..|+++++++|++|.|++
T Consensus        81 ~~D~ivnVvDAtnLeR--nL-yltlQLlE---~g~p~ilaLNm~D~A~~~Gi~I-D~~~L~~~LGvPVv~tvA~~g~G~~  153 (653)
T COG0370          81 KPDLIVNVVDATNLER--NL-YLTLQLLE---LGIPMILALNMIDEAKKRGIRI-DIEKLSKLLGVPVVPTVAKRGEGLE  153 (653)
T ss_pred             CCCEEEEEcccchHHH--HH-HHHHHHHH---cCCCeEEEeccHhhHHhcCCcc-cHHHHHHHhCCCEEEEEeecCCCHH
Confidence            6799999999988752  11 12222223   3899999999999987555433 3566788899999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027856          165 NAFTEVLTQIYR  176 (217)
Q Consensus       165 ~~~~~i~~~~~~  176 (217)
                      ++...+.+....
T Consensus       154 ~l~~~i~~~~~~  165 (653)
T COG0370         154 ELKRAIIELAES  165 (653)
T ss_pred             HHHHHHHHhccc
Confidence            999998864443

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=1.5e-18  Score=116.87  Aligned_cols=160  Identities=20%  Similarity=0.299  Sum_probs=118.6

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      ++...+|.++|..|+|||++..++.-.+..... |+++.......  +  ++.++++||..|+-..+..|+-|+.+.|++
T Consensus        15 ~e~e~rililgldGaGkttIlyrlqvgevvttk-Ptigfnve~v~--y--KNLk~~vwdLggqtSirPyWRcYy~dt~av   89 (182)
T KOG0072|consen   15 PEREMRILILGLDGAGKTTILYRLQVGEVVTTK-PTIGFNVETVP--Y--KNLKFQVWDLGGQTSIRPYWRCYYADTDAV   89 (182)
T ss_pred             CccceEEEEeeccCCCeeEEEEEcccCcccccC-CCCCcCccccc--c--ccccceeeEccCcccccHHHHHHhcccceE
Confidence            446789999999999999999988776654433 56665443333  3  568999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHH-----HHHHcCCcEEEEecCCCCCH
Q 027856           90 LLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATA-----FAERENTFFMETSALESMNV  163 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~i  163 (217)
                      |||+|.++..-..... .++..+.+..-.+..+++++||.|...  .....|+..     ..+..-..+|++||.+|+|+
T Consensus        90 IyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~--~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gl  167 (182)
T KOG0072|consen   90 IYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSG--ALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGL  167 (182)
T ss_pred             EEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchh--hhhHHHHHHHhChHHHhhheeEEEeeccccccCC
Confidence            9999999877554443 355555444445677889999999865  222222221     12222356999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027856          164 ENAFTEVLTQIYR  176 (217)
Q Consensus       164 ~~~~~~i~~~~~~  176 (217)
                      +..++|+.+-+.+
T Consensus       168 d~~~DWL~~~l~~  180 (182)
T KOG0072|consen  168 DPAMDWLQRPLKS  180 (182)
T ss_pred             cHHHHHHHHHHhc
Confidence            9999999987653

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.74  E-value=9.4e-17  Score=122.88  Aligned_cols=156  Identities=21%  Similarity=0.203  Sum_probs=112.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh-----hh---hh-hhhhhh
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ-----ER---YR-AITSAY   82 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-----~~---~~-~~~~~~   82 (217)
                      ....|+|.|.||||||||++.+++........|.++-......+...+  ..++++||||.     ++   .. ....+.
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL  244 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILAL  244 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence            467899999999999999999999987766667777777777665555  58899999991     11   11 111222


Q ss_pred             hcCCcEEEEEEECCC--hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCc-EEEEecCC
Q 027856           83 YRGAVGALLVYDVTR--HVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTF-FMETSALE  159 (217)
Q Consensus        83 ~~~~d~ii~v~d~~~--~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~  159 (217)
                      -+-.++++|++|.+.  ..+.+.-..++.++....  +.|+++|+||+|..+..  ..+++.......+.. ...+++..
T Consensus       245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f--~~p~v~V~nK~D~~~~e--~~~~~~~~~~~~~~~~~~~~~~~~  320 (346)
T COG1084         245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF--KAPIVVVINKIDIADEE--KLEEIEASVLEEGGEEPLKISATK  320 (346)
T ss_pred             HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc--CCCeEEEEecccccchh--HHHHHHHHHHhhccccccceeeee
Confidence            234578999999985  557777778999998887  48999999999987633  344454445554443 77888888


Q ss_pred             CCCHHHHHHHHHHH
Q 027856          160 SMNVENAFTEVLTQ  173 (217)
Q Consensus       160 ~~~i~~~~~~i~~~  173 (217)
                      +.+.+..-..+...
T Consensus       321 ~~~~d~~~~~v~~~  334 (346)
T COG1084         321 GCGLDKLREEVRKT  334 (346)
T ss_pred             hhhHHHHHHHHHHH
Confidence            88877666555544

>CHL00071 tufA elongation factor Tu

Probab=99.74  E-value=1.5e-16  Score=129.98  Aligned_cols=150  Identities=15%  Similarity=0.127  Sum_probs=100.1

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCC------C--------CcccceeEeEEEEEEECCeEEEEEEEeCCChhhh
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSL------E--------SKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY   75 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~------~--------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   75 (217)
                      ....++|+++|++++|||||+++|++..-..      .        .....+++.......+......+.|+||||+..|
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~   88 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence            4556999999999999999999999752110      0        0111334444444444444568899999999888


Q ss_pred             hhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCccCC---CHHHHHHHHHHcC--
Q 027856           76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV-IMLVGNKADLRHLRAV---STEDATAFAEREN--  149 (217)
Q Consensus        76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~--  149 (217)
                      .......+..+|++++|+|+.....-+. ...+..+...   ++| +++++||+|+.+..+.   ..+++..+....+  
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt-~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~  164 (409)
T CHL00071         89 VKNMITGAAQMDGAILVVSAADGPMPQT-KEHILLAKQV---GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFP  164 (409)
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            8777777889999999999987543222 2233333332   677 6789999999753221   1123444444433  


Q ss_pred             ---CcEEEEecCCCCCH
Q 027856          150 ---TFFMETSALESMNV  163 (217)
Q Consensus       150 ---~~~~~~Sa~~~~~i  163 (217)
                         ++++++||.+|.|+
T Consensus       165 ~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        165 GDDIPIVSGSALLALEA  181 (409)
T ss_pred             CCcceEEEcchhhcccc
Confidence               57999999998754

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.73  E-value=1.5e-16  Score=119.75  Aligned_cols=153  Identities=20%  Similarity=0.217  Sum_probs=96.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCCCCcc-----------------------cceeEeEEEEE-------------EEC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKS-----------------------TIGVEFATRSI-------------RCD   58 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~-----------------------~~~~~~~~~~~-------------~~~   58 (217)
                      ||+++|+.++|||||+++|..+.+......                       ..+.+.....+             .+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            589999999999999999997655331110                       01111100000             011


Q ss_pred             CeEEEEEEEeCCChhhhhhhhhhhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC
Q 027856           59 DKIVKAQIWDTAGQERYRAITSAYYR--GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV  136 (217)
Q Consensus        59 ~~~~~~~l~Dt~G~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~  136 (217)
                      .....+.++||||++.|.......+.  .+|++++|+|+.....-.. ..++..+...   ++|+++|+||+|+......
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d-~~~l~~l~~~---~ip~ivvvNK~D~~~~~~~  156 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT-KEHLGLALAL---NIPVFVVVTKIDLAPANIL  156 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCEEEEEECccccCHHHH
Confidence            12357899999999888765554443  6899999999987654322 3344444433   7899999999998653211


Q ss_pred             --CHHHHHHHHHH--------------------------cCCcEEEEecCCCCCHHHHHHHHH
Q 027856          137 --STEDATAFAER--------------------------ENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus       137 --~~~~~~~~~~~--------------------------~~~~~~~~Sa~~~~~i~~~~~~i~  171 (217)
                        ..+++..+...                          ..+++|.+|+.+|+|++++...|.
T Consensus       157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence              11222222221                          124799999999999999887764

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.73  E-value=1.6e-16  Score=117.67  Aligned_cols=161  Identities=12%  Similarity=0.146  Sum_probs=97.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCccccee---EeEEEEEEECCeEEEEEEEeCCChhhhhh-----hhhhhhc
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGV---EFATRSIRCDDKIVKAQIWDTAGQERYRA-----ITSAYYR   84 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----~~~~~~~   84 (217)
                      +++|+++|.+|+|||||+|+|++.........+.+.   +.....+... ....+.+|||||......     +....+.
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            479999999999999999999996654322222221   1111111111 123689999999532211     2223367


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC-----------CCHHHHHHHHH----HcC
Q 027856           85 GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA-----------VSTEDATAFAE----REN  149 (217)
Q Consensus        85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-----------~~~~~~~~~~~----~~~  149 (217)
                      .+|+++++.+. .....  -..++..+...   +.|+++|+||+|+....+           ...++..+.+.    ..+
T Consensus        80 ~~d~~l~v~~~-~~~~~--d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~  153 (197)
T cd04104          80 EYDFFIIISST-RFSSN--DVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG  153 (197)
T ss_pred             CcCEEEEEeCC-CCCHH--HHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence            78998888542 22111  13456666554   679999999999843111           01111222222    212


Q ss_pred             ---CcEEEEecC--CCCCHHHHHHHHHHHHHHHHhh
Q 027856          150 ---TFFMETSAL--ESMNVENAFTEVLTQIYRVVSR  180 (217)
Q Consensus       150 ---~~~~~~Sa~--~~~~i~~~~~~i~~~~~~~~~~  180 (217)
                         ..+|.+|+.  .+.++..+.+.|+..+.+....
T Consensus       154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~  189 (197)
T cd04104         154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRH  189 (197)
T ss_pred             CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHH
Confidence               358999998  5789999999999998876543

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.73  E-value=1.9e-16  Score=120.94  Aligned_cols=157  Identities=20%  Similarity=0.167  Sum_probs=116.3

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhh-------hhhhhhh
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYR-------AITSAYY   83 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~   83 (217)
                      +...+++++|.|++|||||++.|++........++++.+..+..+.+++  ..+++.|+||.-.-.       .......
T Consensus        61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~  138 (365)
T COG1163          61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVA  138 (365)
T ss_pred             cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeee
Confidence            3467899999999999999999999887766667778888888998888  689999999843221       3345677


Q ss_pred             cCCcEEEEEEECCChhh-HHHHHHHHHHHHhhc-----------------------------------------------
Q 027856           84 RGAVGALLVYDVTRHVT-FENVERWLKELRDHT-----------------------------------------------  115 (217)
Q Consensus        84 ~~~d~ii~v~d~~~~~s-~~~~~~~~~~l~~~~-----------------------------------------------  115 (217)
                      ++||++++|+|+....+ .+.+...++......                                               
T Consensus       139 R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V  218 (365)
T COG1163         139 RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADV  218 (365)
T ss_pred             ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceE
Confidence            99999999999986543 322322222211000                                               


Q ss_pred             ------------------CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 027856          116 ------------------DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR  176 (217)
Q Consensus       116 ------------------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  176 (217)
                                        ...+|.++|.||.|+..     .++.....+..  .++.+||..+.|++++.+.|.+.+--
T Consensus       219 ~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~l  290 (365)
T COG1163         219 LIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLGL  290 (365)
T ss_pred             EEecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhCe
Confidence                              01579999999999854     44455455444  79999999999999999999987653

>cd04169 RF3 RF3 subfamily

Probab=99.73  E-value=3.4e-16  Score=120.78  Aligned_cols=115  Identities=18%  Similarity=0.225  Sum_probs=79.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCC----------cc----------cceeEeEEEEEEECCeEEEEEEEeCCChh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLES----------KS----------TIGVEFATRSIRCDDKIVKAQIWDTAGQE   73 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~----------~~----------~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   73 (217)
                      -+|+++|++|+|||||+++|+...-....          ..          ..+.+.......+....+.+.+|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            57999999999999999999853111000          00          11223333334445555899999999998


Q ss_pred             hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856           74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        74 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  132 (217)
                      .|.......++.+|++++|+|+++..... ...++.....   .++|+++++||+|+..
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~---~~~P~iivvNK~D~~~  137 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRL---RGIPIITFINKLDREG  137 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHh---cCCCEEEEEECCccCC
Confidence            88877777889999999999998754322 2334443332   3789999999999855

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd01850 CDC_Septin CDC/Septin

Probab=99.72  E-value=2.7e-16  Score=121.88  Aligned_cols=143  Identities=18%  Similarity=0.230  Sum_probs=93.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCC----------CcccceeEeEEEEEEECCeEEEEEEEeCCChhhh------
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLE----------SKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY------   75 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------   75 (217)
                      ..++|+|+|.+|+|||||+|+|++..+...          ...|.+.......+..++..+.+.+|||||....      
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            468999999999999999999999877543          2344455555556666788889999999993111      


Q ss_pred             ------------h--------hhhhhhhc--CCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856           76 ------------R--------AITSAYYR--GAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        76 ------------~--------~~~~~~~~--~~d~ii~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~  132 (217)
                                  .        ......+.  .+|+++|+++.+... +... ...+..+.    ..+|+++|+||+|+..
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~----~~v~vi~VinK~D~l~  157 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLS----KRVNIIPVIAKADTLT  157 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHh----ccCCEEEEEECCCcCC
Confidence                        0        00101222  568888888876422 1111 22333333    2689999999999865


Q ss_pred             ccC--CCHHHHHHHHHHcCCcEEEEecCC
Q 027856          133 LRA--VSTEDATAFAERENTFFMETSALE  159 (217)
Q Consensus       133 ~~~--~~~~~~~~~~~~~~~~~~~~Sa~~  159 (217)
                      ..+  .......+.+..+++.++......
T Consensus       158 ~~e~~~~k~~i~~~l~~~~i~~~~~~~~~  186 (276)
T cd01850         158 PEELKEFKQRIMEDIEEHNIKIYKFPEDE  186 (276)
T ss_pred             HHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence            322  223445666777888888876643

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.72  E-value=1.5e-16  Score=119.31  Aligned_cols=113  Identities=19%  Similarity=0.212  Sum_probs=79.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCCC----------------CcccceeEeEEEEEEEC--------CeEEEEEEEeCC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSLE----------------SKSTIGVEFATRSIRCD--------DKIVKAQIWDTA   70 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~--------~~~~~~~l~Dt~   70 (217)
                      +|+++|+.++|||||+.+|+...-...                .....++......+.+.        +..+.+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            799999999999999999986431100                00111222222223332        346899999999


Q ss_pred             ChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027856           71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        71 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~  131 (217)
                      |++.|.......+..+|++++|+|+.+..+.+....+ .....   .++|+++|+||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l-~~~~~---~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVL-RQALK---ERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCCcc
Confidence            9999999999999999999999999987655442222 22222   368999999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PRK00049 elongation factor Tu; Reviewed

Probab=99.71  E-value=1.1e-15  Score=124.48  Aligned_cols=149  Identities=16%  Similarity=0.155  Sum_probs=98.4

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCC---C-----------CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhh
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFS---L-----------ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY   75 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~---~-----------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   75 (217)
                      ....++|+++|+.++|||||+++|++....   .           ......+++.......+......+.++||||+..|
T Consensus         9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f   88 (396)
T PRK00049          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY   88 (396)
T ss_pred             CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence            356799999999999999999999973110   0           00112334444444555445568899999999888


Q ss_pred             hhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCccCC---CHHHHHHHHHHc---
Q 027856           76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAV---STEDATAFAERE---  148 (217)
Q Consensus        76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-vv~nK~D~~~~~~~---~~~~~~~~~~~~---  148 (217)
                      .......+..+|++++|+|+......+. ...+..+...   +.|.+ +++||+|+.+..+.   ...++..+....   
T Consensus        89 ~~~~~~~~~~aD~~llVVDa~~g~~~qt-~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~  164 (396)
T PRK00049         89 VKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP  164 (396)
T ss_pred             HHHHHhhhccCCEEEEEEECCCCCchHH-HHHHHHHHHc---CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence            8777777899999999999987543322 2333334332   67875 58999998642221   112333344332   


Q ss_pred             --CCcEEEEecCCCCC
Q 027856          149 --NTFFMETSALESMN  162 (217)
Q Consensus       149 --~~~~~~~Sa~~~~~  162 (217)
                        +++++++||.+|.+
T Consensus       165 ~~~~~iv~iSa~~g~~  180 (396)
T PRK00049        165 GDDTPIIRGSALKALE  180 (396)
T ss_pred             ccCCcEEEeecccccC
Confidence              36799999998753

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.70  E-value=3.1e-16  Score=129.96  Aligned_cols=154  Identities=22%  Similarity=0.187  Sum_probs=97.9

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCC-------------Ccc------------------cceeEeEEEEEEEC
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLE-------------SKS------------------TIGVEFATRSIRCD   58 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~-------------~~~------------------~~~~~~~~~~~~~~   58 (217)
                      ....++|+++|+.++|||||+.+|+...-...             ...                  ..+++.......+.
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~  103 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS  103 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence            35679999999999999999999986431110             000                  11222233333344


Q ss_pred             CeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCH
Q 027856           59 DKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVST  138 (217)
Q Consensus        59 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~  138 (217)
                      .....+.||||||++.|.......+..+|++++|+|+.....-...+.+. .+... + ..++++++||+|+.+.++...
T Consensus       104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~-l~~~l-g-~~~iIvvvNKiD~~~~~~~~~  180 (474)
T PRK05124        104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF-IATLL-G-IKHLVVAVNKMDLVDYSEEVF  180 (474)
T ss_pred             cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH-HHHHh-C-CCceEEEEEeeccccchhHHH
Confidence            44568899999999888766666679999999999998653222112211 12111 1 247889999999874322212


Q ss_pred             HHHH----HHHHHc----CCcEEEEecCCCCCHHHH
Q 027856          139 EDAT----AFAERE----NTFFMETSALESMNVENA  166 (217)
Q Consensus       139 ~~~~----~~~~~~----~~~~~~~Sa~~~~~i~~~  166 (217)
                      ++..    .+....    ..+++++||++|.|+.+.
T Consensus       181 ~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        181 ERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            2222    222332    366999999999998764

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.70  E-value=2.2e-16  Score=121.96  Aligned_cols=114  Identities=19%  Similarity=0.185  Sum_probs=78.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcC--CC---CC-----------cccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhh
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEF--SL---ES-----------KSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAI   78 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~--~~---~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   78 (217)
                      +|+++|++|+|||||+++|+...-  ..   ..           ....+++.......+.....++.+|||||+..+...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            589999999999999999974211  00   00           011222233222333333478999999999888888


Q ss_pred             hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856           79 TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  132 (217)
                      +...++.+|++++|+|+.+...... ...+..+..   .++|+++++||+|+.+
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~---~~~p~ivviNK~D~~~  130 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR---YNVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence            8889999999999999987543222 233333433   3789999999999864

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PLN03126 Elongation factor Tu; Provisional

Probab=99.70  E-value=6.3e-16  Score=127.75  Aligned_cols=150  Identities=14%  Similarity=0.109  Sum_probs=99.7

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcC------CC--------CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhh
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEF------SL--------ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY   75 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   75 (217)
                      ....++|+++|+.++|||||+++|+...-      ..        ......+++.......+......+.++|+||++.|
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f  157 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY  157 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence            45679999999999999999999996211      00        01122333333334444434468899999999999


Q ss_pred             hhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCccCC---CHHHHHHHHHHc---
Q 027856           76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV-IMLVGNKADLRHLRAV---STEDATAFAERE---  148 (217)
Q Consensus        76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~---  148 (217)
                      .......+..+|++++|+|+.+....+. ..++..+...   ++| +++++||+|+.+..+.   ..+++..+....   
T Consensus       158 ~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~  233 (478)
T PLN03126        158 VKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFP  233 (478)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCC
Confidence            8888888889999999999987644333 2333333333   677 7789999998652211   112344444443   


Q ss_pred             --CCcEEEEecCCCCCH
Q 027856          149 --NTFFMETSALESMNV  163 (217)
Q Consensus       149 --~~~~~~~Sa~~~~~i  163 (217)
                        .++++++|+.+|.++
T Consensus       234 ~~~~~~vp~Sa~~g~n~  250 (478)
T PLN03126        234 GDDIPIISGSALLALEA  250 (478)
T ss_pred             cCcceEEEEEccccccc
Confidence              467999999988543

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.70  E-value=1e-16  Score=124.22  Aligned_cols=146  Identities=19%  Similarity=0.239  Sum_probs=92.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCCCC------------------cccceeEeEEEEEEECCeEEEEEEEeCCChhhhh
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSLES------------------KSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYR   76 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   76 (217)
                      +|+++|++|+|||||+++|+...-....                  ....+.......+.+++  +.+.+|||||...+.
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~   78 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV   78 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence            5899999999999999999864211100                  00112222223333333  688999999998888


Q ss_pred             hhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHH-HHHHHHHcCCc--EE
Q 027856           77 AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTED-ATAFAERENTF--FM  153 (217)
Q Consensus        77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~--~~  153 (217)
                      ..+...+..+|++++|+|+++.........| ..+..   .++|+++++||+|....   ..++ ...+....+..  .+
T Consensus        79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~---~~~p~iivvNK~D~~~~---~~~~~~~~l~~~~~~~~~~~  151 (268)
T cd04170          79 GETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE---AGIPRIIFINKMDRERA---DFDKTLAALQEAFGRPVVPL  151 (268)
T ss_pred             HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCccCCC---CHHHHHHHHHHHhCCCeEEE
Confidence            8888889999999999999886554433223 33333   37899999999998653   2332 33333334444  33


Q ss_pred             EEecCCCCCHHHHHHH
Q 027856          154 ETSALESMNVENAFTE  169 (217)
Q Consensus       154 ~~Sa~~~~~i~~~~~~  169 (217)
                      .+...++.++..+.+.
T Consensus       152 ~ip~~~~~~~~~~vd~  167 (268)
T cd04170         152 QLPIGEGDDFKGVVDL  167 (268)
T ss_pred             EecccCCCceeEEEEc
Confidence            4445555554444333

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.70  E-value=4.8e-16  Score=126.89  Aligned_cols=149  Identities=23%  Similarity=0.196  Sum_probs=94.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCC-------------C------------------cccceeEeEEEEEEECCeEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLE-------------S------------------KSTIGVEFATRSIRCDDKIV   62 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~-------------~------------------~~~~~~~~~~~~~~~~~~~~   62 (217)
                      ++|+++|+.++|||||+.+|+...-...             .                  ....+.+.......+.....
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            5899999999999999999975321100             0                  00112223333333434446


Q ss_pred             EEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHH---
Q 027856           63 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTE---  139 (217)
Q Consensus        63 ~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~---  139 (217)
                      .+.||||||++.|.......+..+|++++|+|+......+..+.+. .+....  ..++++++||+|+.+.+....+   
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~-~~~~~~--~~~iivviNK~D~~~~~~~~~~~i~  157 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY-IASLLG--IRHVVLAVNKMDLVDYDEEVFENIK  157 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH-HHHHcC--CCcEEEEEEecccccchHHHHHHHH
Confidence            8899999999998777777789999999999998754322222222 222221  3468899999998653221112   


Q ss_pred             -HHHHHHHHcC---CcEEEEecCCCCCHHH
Q 027856          140 -DATAFAEREN---TFFMETSALESMNVEN  165 (217)
Q Consensus       140 -~~~~~~~~~~---~~~~~~Sa~~~~~i~~  165 (217)
                       +...+....+   ++++++||.+|.|+.+
T Consensus       158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       158 KDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence             2222333333   4699999999999875

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.69  E-value=1.9e-15  Score=102.54  Aligned_cols=106  Identities=25%  Similarity=0.279  Sum_probs=69.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCChhh---------hhhhhhhhhc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER---------YRAITSAYYR   84 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~~~   84 (217)
                      +|+++|.+|+|||||+|+|++..... ...+..+.......+.+++.  .+.++||||...         ........+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK--KFILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE--EEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee--eEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            69999999999999999999864322 22222223333344555664  557999999421         1112233348


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 027856           85 GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNK  127 (217)
Q Consensus        85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK  127 (217)
                      .+|++++|+|++++.. +....++..+.    .+.|+++|+||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence            9999999999887432 22344545553    48999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.68  E-value=2.4e-15  Score=111.37  Aligned_cols=159  Identities=19%  Similarity=0.176  Sum_probs=96.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCc--ccceeEeEEEEEEECCeEEEEEEEeCCChhhh-------h----hhhh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESK--STIGVEFATRSIRCDDKIVKAQIWDTAGQERY-------R----AITS   80 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~----~~~~   80 (217)
                      ++|+++|.+|+|||||+|++++........  ...+...........+  ..+.++||||....       .    ....
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            479999999999999999999987543331  1122222222333344  58899999993221       1    1112


Q ss_pred             hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCC--CCcEEEEEeCCCCCCccCC------CHHHHHHHHHHcCCcE
Q 027856           81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS--NIVIMLVGNKADLRHLRAV------STEDATAFAERENTFF  152 (217)
Q Consensus        81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~p~ivv~nK~D~~~~~~~------~~~~~~~~~~~~~~~~  152 (217)
                      ....++|++++|+++.+ .+-++ ...++.+....+.  -.++++++|+.|......+      ....+.......+..|
T Consensus        79 ~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~  156 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY  156 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence            23467899999999887 33222 3445555544432  2578899999997543211      1133444555555556


Q ss_pred             EEEecC-----CCCCHHHHHHHHHHHHHH
Q 027856          153 METSAL-----ESMNVENAFTEVLTQIYR  176 (217)
Q Consensus       153 ~~~Sa~-----~~~~i~~~~~~i~~~~~~  176 (217)
                      +.++..     .+.++.++++.|.+.+.+
T Consensus       157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         157 VAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            666544     455677777777666554

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.68  E-value=5.1e-16  Score=116.43  Aligned_cols=161  Identities=17%  Similarity=0.256  Sum_probs=99.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCCCCc-ccceeEeEEEEEEECCeEEEEEEEeCCChhhhh-----hhhhhhhcCCcE
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEFATRSIRCDDKIVKAQIWDTAGQERYR-----AITSAYYRGAVG   88 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----~~~~~~~~~~d~   88 (217)
                      ||+++|+.+|||||+.+.+.++..+.... -..+.+.....+...+ .+.+.+||+||+..+.     ......++++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~-~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLS-FLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTT-SCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCC-CcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            79999999999999999998775433221 1222333333333333 3699999999976443     346778899999


Q ss_pred             EEEEEECCChhhHHHHH---HHHHHHHhhcCCCCcEEEEEeCCCCCCcc--CCC----HHHHHHHHHHcC---CcEEEEe
Q 027856           89 ALLVYDVTRHVTFENVE---RWLKELRDHTDSNIVIMLVGNKADLRHLR--AVS----TEDATAFAEREN---TFFMETS  156 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~---~~~~~l~~~~~~~~p~ivv~nK~D~~~~~--~~~----~~~~~~~~~~~~---~~~~~~S  156 (217)
                      +|||+|+.+.+-.+.+.   ..+..+.... ++..+.+.++|+|+..+.  ...    .+++.+.+...+   +.++.+|
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s-p~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS  158 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYS-PNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS  158 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHHHS-TT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHHhC-CCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence            99999998544334443   4444444443 588899999999986421  111    122233334444   6699999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHH
Q 027856          157 ALESMNVENAFTEVLTQIYRVV  178 (217)
Q Consensus       157 a~~~~~i~~~~~~i~~~~~~~~  178 (217)
                      ..+ ..+-+.|..+++.+.-+.
T Consensus       159 I~D-~Sly~A~S~Ivq~LiP~~  179 (232)
T PF04670_consen  159 IWD-ESLYEAWSKIVQKLIPNL  179 (232)
T ss_dssp             TTS-THHHHHHHHHHHTTSTTH
T ss_pred             CcC-cHHHHHHHHHHHHHcccH
Confidence            998 478888888888776443

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.68  E-value=5.5e-15  Score=120.00  Aligned_cols=159  Identities=17%  Similarity=0.184  Sum_probs=113.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCD-DKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      .++=|.++|+-..|||||+..+-+......-.-.++-...-..+..+ +....++|+||||++.|..+...-..-+|+++
T Consensus         4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI   83 (509)
T COG0532           4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI   83 (509)
T ss_pred             CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence            34568999999999999999999887755433333322333333333 12358899999999999999988889999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHH-------HcC--CcEEEEecCCCC
Q 027856           91 LVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAE-------REN--TFFMETSALESM  161 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-------~~~--~~~~~~Sa~~~~  161 (217)
                      +|+++++.--.+    ..+.+......+.|+++++||+|..+.   .......-..       .++  ..++++||++|+
T Consensus        84 LVVa~dDGv~pQ----TiEAI~hak~a~vP~iVAiNKiDk~~~---np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~  156 (509)
T COG0532          84 LVVAADDGVMPQ----TIEAINHAKAAGVPIVVAINKIDKPEA---NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE  156 (509)
T ss_pred             EEEEccCCcchh----HHHHHHHHHHCCCCEEEEEecccCCCC---CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence            999999865333    233344444459999999999998742   2222222222       233  449999999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q 027856          162 NVENAFTEVLTQIYRV  177 (217)
Q Consensus       162 ~i~~~~~~i~~~~~~~  177 (217)
                      |+.+++..++-.....
T Consensus       157 Gi~eLL~~ill~aev~  172 (509)
T COG0532         157 GIDELLELILLLAEVL  172 (509)
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999988555444

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.68  E-value=1.4e-15  Score=117.10  Aligned_cols=166  Identities=20%  Similarity=0.101  Sum_probs=113.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhh-------hhhhhhhcC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYR-------AITSAYYRG   85 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~   85 (217)
                      .-.|.+||.|++|||||+++++.........+.++.......+.+.+. -.+.+=|.||.-+-.       ......+..
T Consensus       159 lADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~-~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER  237 (369)
T COG0536         159 LADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGG-ESFVVADIPGLIEGASEGVGLGLRFLRHIER  237 (369)
T ss_pred             ecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCC-CcEEEecCcccccccccCCCccHHHHHHHHh
Confidence            456889999999999999999998766655566667777777766333 478999999943221       112234567


Q ss_pred             CcEEEEEEECCChh---hHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCc-EEEEecCC
Q 027856           86 AVGALLVYDVTRHV---TFENVERWLKELRDHTD--SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTF-FMETSALE  159 (217)
Q Consensus        86 ~d~ii~v~d~~~~~---s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~  159 (217)
                      +.++++|+|++..+   ..++......+|..+..  .++|.+||+||+|+....+...+..+.+....+.. .+++||.+
T Consensus       238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t  317 (369)
T COG0536         238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALT  317 (369)
T ss_pred             hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhc
Confidence            88999999998644   25555566666655533  47899999999996542222222223333333333 22299999


Q ss_pred             CCCHHHHHHHHHHHHHHHHh
Q 027856          160 SMNVENAFTEVLTQIYRVVS  179 (217)
Q Consensus       160 ~~~i~~~~~~i~~~~~~~~~  179 (217)
                      ++|++++...+.+.+.+...
T Consensus       318 ~~g~~~L~~~~~~~l~~~~~  337 (369)
T COG0536         318 REGLDELLRALAELLEETKA  337 (369)
T ss_pred             ccCHHHHHHHHHHHHHHhhh
Confidence            99999999999988877753

>PLN03127 Elongation factor Tu; Provisional

Probab=99.68  E-value=2.5e-15  Score=123.55  Aligned_cols=160  Identities=16%  Similarity=0.129  Sum_probs=99.3

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhC------cCCCC--------CcccceeEeEEEEEEECCeEEEEEEEeCCChhhh
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRN------EFSLE--------SKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY   75 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   75 (217)
                      ....++|+++|+.++|||||+++|.+.      .....        .....+++.......+.....++.|+||||+..|
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f  137 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY  137 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence            346799999999999999999999732      11000        0111333444445555555568899999999888


Q ss_pred             hhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCccCCC---HHHHHHHHHHc---
Q 027856           76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV-IMLVGNKADLRHLRAVS---TEDATAFAERE---  148 (217)
Q Consensus        76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~---  148 (217)
                      .......+..+|++++|+|+......+. ...+..+...   ++| +++++||+|+.+..+..   ..++.++....   
T Consensus       138 ~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~~---gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~  213 (447)
T PLN03127        138 VKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV---GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFP  213 (447)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc---CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            7766666778999999999987543322 2223333332   678 57889999997522211   11222333222   


Q ss_pred             --CCcEEEEecC---CCCC-------HHHHHHHHHHH
Q 027856          149 --NTFFMETSAL---ESMN-------VENAFTEVLTQ  173 (217)
Q Consensus       149 --~~~~~~~Sa~---~~~~-------i~~~~~~i~~~  173 (217)
                        .++++++|+.   +|.|       +.++++.+.+.
T Consensus       214 ~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~  250 (447)
T PLN03127        214 GDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEY  250 (447)
T ss_pred             CCcceEEEeccceeecCCCcccccchHHHHHHHHHHh
Confidence              3568888876   4544       45555555443

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.68  E-value=9e-16  Score=124.20  Aligned_cols=162  Identities=20%  Similarity=0.237  Sum_probs=118.6

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcC--CC-----------CCcccceeEeEEE--EE-EECCeEEEEEEEeCCChh
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEF--SL-----------ESKSTIGVEFATR--SI-RCDDKIVKAQIWDTAGQE   73 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~--~~-----------~~~~~~~~~~~~~--~~-~~~~~~~~~~l~Dt~G~~   73 (217)
                      .+..-+++|+-+-..|||||..+|+...-  +.           ......|++....  .+ ..++..+.++++||||+.
T Consensus        57 ~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHv  136 (650)
T KOG0462|consen   57 VENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHV  136 (650)
T ss_pred             hhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcc
Confidence            35677999999999999999999886321  00           0011222222222  22 224777999999999999


Q ss_pred             hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC-CHHHHHHHHHHcCCcE
Q 027856           74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV-STEDATAFAERENTFF  152 (217)
Q Consensus        74 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~  152 (217)
                      .|..-....+.-|+++++|+|++....-+.+..++..+..    +..+|.|+||+|+...+.- ......+.+.....+.
T Consensus       137 DFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~----~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~  212 (650)
T KOG0462|consen  137 DFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA----GLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEV  212 (650)
T ss_pred             cccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc----CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccce
Confidence            9988888888999999999999998776777777777664    7789999999999764321 1222334444455679


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHH
Q 027856          153 METSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       153 ~~~Sa~~~~~i~~~~~~i~~~~~  175 (217)
                      +.+||++|.|+.++|+.|++.+.
T Consensus       213 i~vSAK~G~~v~~lL~AII~rVP  235 (650)
T KOG0462|consen  213 IYVSAKTGLNVEELLEAIIRRVP  235 (650)
T ss_pred             EEEEeccCccHHHHHHHHHhhCC
Confidence            99999999999999999887664

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.67  E-value=1.8e-15  Score=118.95  Aligned_cols=81  Identities=19%  Similarity=0.253  Sum_probs=55.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEE---------------------CC-eEEEEEEEeCCCh-
Q 027856           16 VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRC---------------------DD-KIVKAQIWDTAGQ-   72 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~l~Dt~G~-   72 (217)
                      |+++|.|++|||||+++|++........+..+.+.......+                     ++ ..+.+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            589999999999999999998754322233333333322221                     22 3478999999996 


Q ss_pred             ---hhhhhhhh---hhhcCCcEEEEEEECC
Q 027856           73 ---ERYRAITS---AYYRGAVGALLVYDVT   96 (217)
Q Consensus        73 ---~~~~~~~~---~~~~~~d~ii~v~d~~   96 (217)
                         +.+..+..   ..++++|++++|+|+.
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence               33443333   3589999999999997

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.67  E-value=2.5e-15  Score=123.74  Aligned_cols=151  Identities=16%  Similarity=0.137  Sum_probs=98.9

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCc--CCC---------------------------CCcccceeEeEEEEEEECCeE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNE--FSL---------------------------ESKSTIGVEFATRSIRCDDKI   61 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~~   61 (217)
                      ...++|+++|+.++|||||+.+|+...  ...                           ......+.+.......+....
T Consensus         5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~   84 (446)
T PTZ00141          5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (446)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence            456899999999999999999998621  000                           000122333444444555556


Q ss_pred             EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChh-------hHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCC--
Q 027856           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV-------TFENVERWLKELRDHTDSNIV-IMLVGNKADLR--  131 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-------s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~--  131 (217)
                      ..+.|+||||+..|.......+..+|++++|+|+....       ..+..+.|. .+...   ++| +++++||+|..  
T Consensus        85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~-~~~~~---gi~~iiv~vNKmD~~~~  160 (446)
T PTZ00141         85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHAL-LAFTL---GVKQMIVCINKMDDKTV  160 (446)
T ss_pred             eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHH-HHHHc---CCCeEEEEEEccccccc
Confidence            79999999999999888888889999999999998752       011112222 23222   665 67899999943  


Q ss_pred             CccCCCH----HHHHHHHHHc-----CCcEEEEecCCCCCHHH
Q 027856          132 HLRAVST----EDATAFAERE-----NTFFMETSALESMNVEN  165 (217)
Q Consensus       132 ~~~~~~~----~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~  165 (217)
                      +..+...    +++..+....     .++++++|+.+|+|+.+
T Consensus       161 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        161 NYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             hhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            2111112    3333333333     35699999999999854

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.67  E-value=2.6e-15  Score=125.58  Aligned_cols=117  Identities=17%  Similarity=0.186  Sum_probs=80.8

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCc--CCCC------------------CcccceeEeEEEEEEECCeEEEEEEEeCC
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNE--FSLE------------------SKSTIGVEFATRSIRCDDKIVKAQIWDTA   70 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~--~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~   70 (217)
                      ....+|+|+|++++|||||+++|+...  ....                  .....+++.......+....+.+++||||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP   87 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP   87 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence            457799999999999999999997411  1000                  00011223333333344445789999999


Q ss_pred             ChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027856           71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        71 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~  131 (217)
                      |+..|.......+..+|++++|+|+++..... ...++.....   .++|+++++||+|+.
T Consensus        88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~~---~~iPiiv~iNK~D~~  144 (526)
T PRK00741         88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVCRL---RDTPIFTFINKLDRD  144 (526)
T ss_pred             CchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHHHh---cCCCEEEEEECCccc
Confidence            99988877777889999999999998754222 2344444333   389999999999974

>PRK13351 elongation factor G; Reviewed

Probab=99.67  E-value=1.3e-15  Score=132.16  Aligned_cols=119  Identities=18%  Similarity=0.171  Sum_probs=84.1

Q ss_pred             CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCC--------CC-----C-----cccceeEeEEEEEEECCeEEEEEEEeC
Q 027856            8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFS--------LE-----S-----KSTIGVEFATRSIRCDDKIVKAQIWDT   69 (217)
Q Consensus         8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~--------~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~l~Dt   69 (217)
                      .+.+...+|+|+|+.|+|||||+++|+...-.        ..     +     ....++......+.+  ..+.+++|||
T Consensus         3 ~~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~--~~~~i~liDt   80 (687)
T PRK13351          3 MPLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW--DNHRINLIDT   80 (687)
T ss_pred             CccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE--CCEEEEEEEC
Confidence            34456789999999999999999999853210        00     0     011112222223333  3478999999


Q ss_pred             CChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856           70 AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        70 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  132 (217)
                      ||+..+...+..+++.+|++++|+|+++.........| ..+..   .++|+++++||+|+..
T Consensus        81 PG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~  139 (687)
T PRK13351         81 PGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG  139 (687)
T ss_pred             CCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence            99999988889999999999999999987665544334 33333   3789999999999853

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.67  E-value=2.1e-15  Score=129.58  Aligned_cols=154  Identities=21%  Similarity=0.176  Sum_probs=97.1

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCC-------------Ccc------------------cceeEeEEEEEEE
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLE-------------SKS------------------TIGVEFATRSIRC   57 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~-------------~~~------------------~~~~~~~~~~~~~   57 (217)
                      +....++|+++|++++|||||+++|+...-...             ...                  ..+.+.......+
T Consensus        20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~   99 (632)
T PRK05506         20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF   99 (632)
T ss_pred             cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence            345568999999999999999999997432111             000                  0122222223333


Q ss_pred             CCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCC
Q 027856           58 DDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS  137 (217)
Q Consensus        58 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~  137 (217)
                      ......+.|+||||++.+.......+..+|++++|+|+......+..+. ...+...  ...++++++||+|+.+.....
T Consensus       100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~-~~~~~~~--~~~~iivvvNK~D~~~~~~~~  176 (632)
T PRK05506        100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRH-SFIASLL--GIRHVVLAVNKMDLVDYDQEV  176 (632)
T ss_pred             ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHH-HHHHHHh--CCCeEEEEEEecccccchhHH
Confidence            3344578899999998887666667889999999999976543222121 1222222  135788999999986422211


Q ss_pred             HH----HHHHHHHHcC---CcEEEEecCCCCCHHH
Q 027856          138 TE----DATAFAEREN---TFFMETSALESMNVEN  165 (217)
Q Consensus       138 ~~----~~~~~~~~~~---~~~~~~Sa~~~~~i~~  165 (217)
                      .+    ++..+....+   .+++++||++|.|+.+
T Consensus       177 ~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        177 FDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            22    2223333444   4599999999999874

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.67  E-value=1.8e-15  Score=124.54  Aligned_cols=151  Identities=15%  Similarity=0.161  Sum_probs=101.7

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcC--CC---------------------------CCcccceeEeEEEEEEECCeE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEF--SL---------------------------ESKSTIGVEFATRSIRCDDKI   61 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~~   61 (217)
                      ...++|+++|+.++|||||+.+|+...-  ..                           ......+++.......+....
T Consensus         5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~   84 (447)
T PLN00043          5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK   84 (447)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence            4568999999999999999999874211  00                           001122333334444455556


Q ss_pred             EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHH-------HHHHHHHHHHhhcCCCC-cEEEEEeCCCCCCc
Q 027856           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFE-------NVERWLKELRDHTDSNI-VIMLVGNKADLRHL  133 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~-------~~~~~~~~l~~~~~~~~-p~ivv~nK~D~~~~  133 (217)
                      ..++++|+||++.|.......+..+|++++|+|+.+.. ++       .....+..+..   .++ ++++++||+|+.+.
T Consensus        85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~-~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD~~~~  160 (447)
T PLN00043         85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGG-FEAGISKDGQTREHALLAFT---LGVKQMICCCNKMDATTP  160 (447)
T ss_pred             EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCc-eecccCCCchHHHHHHHHHH---cCCCcEEEEEEcccCCch
Confidence            79999999999999999899999999999999998731 11       11222222222   266 46889999997621


Q ss_pred             c--C----CCHHHHHHHHHHcC-----CcEEEEecCCCCCHHH
Q 027856          134 R--A----VSTEDATAFAEREN-----TFFMETSALESMNVEN  165 (217)
Q Consensus       134 ~--~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  165 (217)
                      .  .    ...+++..++...+     ++++++||.+|+|+.+
T Consensus       161 ~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        161 KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            1  1    11345566666655     5699999999999853

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.67  E-value=6.8e-16  Score=123.62  Aligned_cols=168  Identities=23%  Similarity=0.186  Sum_probs=111.6

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhh-h------h--hhhh
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER-Y------R--AITS   80 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~------~--~~~~   80 (217)
                      .+..++|+++|.||+|||||+|.|......... +..|++.+.....++-..+++.|.||+|..+ -      .  ....
T Consensus       265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVS-pv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~  343 (531)
T KOG1191|consen  265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVS-PVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERAR  343 (531)
T ss_pred             hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeC-CCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHH
Confidence            456799999999999999999999999887665 5556666666666655558999999999544 1      1  1223


Q ss_pred             hhhcCCcEEEEEEECCC--hhhHHHHHHHHHHHHhhcC------CCCcEEEEEeCCCCCCc-cCCCHHHHHHHH-HHc-C
Q 027856           81 AYYRGAVGALLVYDVTR--HVTFENVERWLKELRDHTD------SNIVIMLVGNKADLRHL-RAVSTEDATAFA-ERE-N  149 (217)
Q Consensus        81 ~~~~~~d~ii~v~d~~~--~~s~~~~~~~~~~l~~~~~------~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~-~~~-~  149 (217)
                      ..+..+|++++|+|+..  -++-..+...+........      ...+++++.||.|+... .+.......... ... .
T Consensus       344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~  423 (531)
T KOG1191|consen  344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSV  423 (531)
T ss_pred             HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcc
Confidence            45678999999999943  3322222333333322221      34789999999999763 222221111111 111 1


Q ss_pred             Cc-EEEEecCCCCCHHHHHHHHHHHHHHHH
Q 027856          150 TF-FMETSALESMNVENAFTEVLTQIYRVV  178 (217)
Q Consensus       150 ~~-~~~~Sa~~~~~i~~~~~~i~~~~~~~~  178 (217)
                      .+ ..++|++++++++++.+.+.+.+....
T Consensus       424 ~~i~~~vs~~tkeg~~~L~~all~~~~~~~  453 (531)
T KOG1191|consen  424 FPIVVEVSCTTKEGCERLSTALLNIVERLV  453 (531)
T ss_pred             cceEEEeeechhhhHHHHHHHHHHHHHHhh
Confidence            23 566999999999999988887666443

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.66  E-value=3.6e-15  Score=119.02  Aligned_cols=160  Identities=21%  Similarity=0.232  Sum_probs=118.3

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcC---------------CCCCcccceeEeEEEEEEE---CCeEEEEEEEeCC
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEF---------------SLESKSTIGVEFATRSIRC---DDKIVKAQIWDTA   70 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~   70 (217)
                      +..+.-+..++.+-..|||||..|++...-               ..+....+++--....+.+   ++..+.++++|||
T Consensus         5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTP   84 (603)
T COG0481           5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTP   84 (603)
T ss_pred             chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCC
Confidence            345566889999999999999999987421               1111222333333333333   5688999999999


Q ss_pred             ChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHH-HHHHHHcC
Q 027856           71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDA-TAFAEREN  149 (217)
Q Consensus        71 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~~~~~  149 (217)
                      |+..|..-....+..|.+.++|+|++..-.-+.+.+.|..+..    +.-++.|+||+|++..+   .+.. .+..+-.|
T Consensus        85 GHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Ad---pervk~eIe~~iG  157 (603)
T COG0481          85 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAAD---PERVKQEIEDIIG  157 (603)
T ss_pred             CccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCC---HHHHHHHHHHHhC
Confidence            9998887666777889999999999998777777787777765    67799999999997632   3333 33333445


Q ss_pred             Cc---EEEEecCCCCCHHHHHHHHHHHHH
Q 027856          150 TF---FMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       150 ~~---~~~~Sa~~~~~i~~~~~~i~~~~~  175 (217)
                      ++   .+.+||++|.|+.++++.|++.+.
T Consensus       158 id~~dav~~SAKtG~gI~~iLe~Iv~~iP  186 (603)
T COG0481         158 IDASDAVLVSAKTGIGIEDVLEAIVEKIP  186 (603)
T ss_pred             CCcchheeEecccCCCHHHHHHHHHhhCC
Confidence            44   899999999999999999987654

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.66  E-value=9.9e-16  Score=114.76  Aligned_cols=164  Identities=19%  Similarity=0.222  Sum_probs=110.1

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEE-EECCeEEEEEEEeCCCh-------hhhhhhhhh
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSI-RCDDKIVKAQIWDTAGQ-------ERYRAITSA   81 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~-------~~~~~~~~~   81 (217)
                      ...+++|+++|.+|+|||||||+|+++...+...-..+.+...... .+++  -.+.|||+||-       .+++.+...
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d  113 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD  113 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence            4567999999999999999999999776655443333333333322 2344  47899999993       347778888


Q ss_pred             hhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCcc-------CCCHHHHHHHHH--------
Q 027856           82 YYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLR-------AVSTEDATAFAE--------  146 (217)
Q Consensus        82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-------~~~~~~~~~~~~--------  146 (217)
                      ++...|.+++++++.++.---+ .+++..+.... -+.++++++|..|....-       ......++++.+        
T Consensus       114 ~l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~  191 (296)
T COG3596         114 YLPKLDLVLWLIKADDRALGTD-EDFLRDVIILG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR  191 (296)
T ss_pred             HhhhccEEEEeccCCCccccCC-HHHHHHHHHhc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999998863222 33444443333 258999999999985431       011111222211        


Q ss_pred             Hc--CCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027856          147 RE--NTFFMETSALESMNVENAFTEVLTQIYRV  177 (217)
Q Consensus       147 ~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  177 (217)
                      ..  --+++.++...+.|++.+...++..+...
T Consensus       192 ~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e  224 (296)
T COG3596         192 LFQEVKPVVAVSGRLPWGLKELVRALITALPVE  224 (296)
T ss_pred             HHhhcCCeEEeccccCccHHHHHHHHHHhCccc
Confidence            11  23477788899999999999999887733

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.65  E-value=4e-15  Score=122.29  Aligned_cols=162  Identities=19%  Similarity=0.151  Sum_probs=103.3

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCC---CCCcc--cceeEeEEE-------------EEEECC------------
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFS---LESKS--TIGVEFATR-------------SIRCDD------------   59 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~---~~~~~--~~~~~~~~~-------------~~~~~~------------   59 (217)
                      .+..++|+++|+-..|||||+.+|++....   .+...  |....+...             +.....            
T Consensus        31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (460)
T PTZ00327         31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG  110 (460)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence            466799999999999999999999975321   11111  111111100             000000            


Q ss_pred             ----eEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCcc
Q 027856           60 ----KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH-VTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLR  134 (217)
Q Consensus        60 ----~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~  134 (217)
                          ....+.|+|+||++.|.......+..+|++++|+|+..+ ...+..+.+ ..+...  .-.++++|+||+|+.+..
T Consensus       111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl-~i~~~l--gi~~iIVvlNKiDlv~~~  187 (460)
T PTZ00327        111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHL-AAVEIM--KLKHIIILQNKIDLVKEA  187 (460)
T ss_pred             ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHH-HHHHHc--CCCcEEEEEecccccCHH
Confidence                023689999999999988877888899999999999874 222222222 222222  134688999999987522


Q ss_pred             CC--CHHHHHHHHHH---cCCcEEEEecCCCCCHHHHHHHHHHHH
Q 027856          135 AV--STEDATAFAER---ENTFFMETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       135 ~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~  174 (217)
                      ..  ..+++.++...   .+.+++++||.+|.|++.+++.|.+.+
T Consensus       188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l  232 (460)
T PTZ00327        188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI  232 (460)
T ss_pred             HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence            11  12233333322   356799999999999999888887544

>PRK09866 hypothetical protein; Provisional

Probab=99.63  E-value=3e-14  Score=118.67  Aligned_cols=108  Identities=15%  Similarity=0.179  Sum_probs=73.5

Q ss_pred             EEEEEeCCChhh-----hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCC
Q 027856           63 KAQIWDTAGQER-----YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS  137 (217)
Q Consensus        63 ~~~l~Dt~G~~~-----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~  137 (217)
                      ++.|+||||...     +.......+..+|+++||+|+....+..+ ....+.+... +...|+++|+||+|..+.....
T Consensus       231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~-~K~~PVILVVNKIDl~dreedd  308 (741)
T PRK09866        231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV-GQSVPLYVLVNKFDQQDRNSDD  308 (741)
T ss_pred             CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc-CCCCCEEEEEEcccCCCcccch
Confidence            678999999532     22334457899999999999987544333 2344444433 1235999999999986433323


Q ss_pred             HHHHHHHHH----Hc---CCcEEEEecCCCCCHHHHHHHHHH
Q 027856          138 TEDATAFAE----RE---NTFFMETSALESMNVENAFTEVLT  172 (217)
Q Consensus       138 ~~~~~~~~~----~~---~~~~~~~Sa~~~~~i~~~~~~i~~  172 (217)
                      .+....+..    ..   ...+|++||+.|.|++++++.|..
T Consensus       309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            444444432    11   235999999999999999999886

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.62  E-value=2.4e-14  Score=115.94  Aligned_cols=83  Identities=19%  Similarity=0.288  Sum_probs=57.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEE---------------------C-CeEEEEEEEeCCC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRC---------------------D-DKIVKAQIWDTAG   71 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~l~Dt~G   71 (217)
                      ++|+++|.||+|||||+++|++........+..+.+.......+                     + .....+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            68999999999999999999998765432233333333333221                     1 1236789999999


Q ss_pred             h----hhhhhhhhh---hhcCCcEEEEEEECC
Q 027856           72 Q----ERYRAITSA---YYRGAVGALLVYDVT   96 (217)
Q Consensus        72 ~----~~~~~~~~~---~~~~~d~ii~v~d~~   96 (217)
                      .    .....+...   .++.+|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            4    222233333   388999999999996

>PRK12739 elongation factor G; Reviewed

Probab=99.62  E-value=2.6e-14  Score=123.95  Aligned_cols=118  Identities=16%  Similarity=0.134  Sum_probs=83.6

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCC-----C-------------CCcccceeEeEEEEEEECCeEEEEEEEeCC
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFS-----L-------------ESKSTIGVEFATRSIRCDDKIVKAQIWDTA   70 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~-----~-------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~   70 (217)
                      ..+...+|+|+|++++|||||+++|+...-.     .             +....++.+.....+.+++  .++.++|||
T Consensus         4 ~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTP   81 (691)
T PRK12739          4 PLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTP   81 (691)
T ss_pred             CccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCC
Confidence            3456789999999999999999999753110     0             0122333444444444444  689999999


Q ss_pred             ChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856           71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        71 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  132 (217)
                      |+..+...+...+..+|++++|+|+.+....+.. ..+..+..   .++|+++++||+|+..
T Consensus        82 G~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~---~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         82 GHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK---YGVPRIVFVNKMDRIG  139 (691)
T ss_pred             CHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence            9988887788889999999999999876543332 33333333   3789999999999863

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.61  E-value=2.8e-14  Score=123.72  Aligned_cols=119  Identities=16%  Similarity=0.123  Sum_probs=84.2

Q ss_pred             CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCC-----CC-------------cccceeEeEEEEEEECCeEEEEEEEeC
Q 027856            8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSL-----ES-------------KSTIGVEFATRSIRCDDKIVKAQIWDT   69 (217)
Q Consensus         8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~-----~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt   69 (217)
                      ...+...+|+|+|++++|||||+++|+...-..     ..             ...++.+.....+.+.  ...+.+|||
T Consensus         5 ~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~--~~~i~liDT   82 (689)
T TIGR00484         5 TDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK--GHRINIIDT   82 (689)
T ss_pred             CccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC--CeEEEEEEC
Confidence            445667899999999999999999997522110     00             1122333334444444  468999999


Q ss_pred             CChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856           70 AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        70 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  132 (217)
                      ||+..+...+...+..+|++++|+|+.+....+.. .++..+..   .++|+++++||+|+..
T Consensus        83 PG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~  141 (689)
T TIGR00484        83 PGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR---YEVPRIAFVNKMDKTG  141 (689)
T ss_pred             CCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence            99988877788889999999999999886554433 23333333   3789999999999875

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.61  E-value=3e-15  Score=107.70  Aligned_cols=116  Identities=26%  Similarity=0.334  Sum_probs=72.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEE-CCeEEEEEEEeCCChhhhhhhhhh---hhcCCcE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRC-DDKIVKAQIWDTAGQERYRAITSA---YYRGAVG   88 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~---~~~~~d~   88 (217)
                      ...|+++|+.|+|||+|...|..+......... .   ......+ ......+.++|+||+.+.+.....   +...+.+
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e---~n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~   78 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-E---NNIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG   78 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B---S-S---EEEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-c---CCceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence            357899999999999999999998554333222 1   1112222 223347899999999988764433   4788999


Q ss_pred             EEEEEECCC-hhhHHHH-HHHHHHHHhhc--CCCCcEEEEEeCCCCCC
Q 027856           89 ALLVYDVTR-HVTFENV-ERWLKELRDHT--DSNIVIMLVGNKADLRH  132 (217)
Q Consensus        89 ii~v~d~~~-~~s~~~~-~~~~~~l~~~~--~~~~p~ivv~nK~D~~~  132 (217)
                      ||||+|.+. ...+.++ +.++..+....  ...+|++|++||.|+..
T Consensus        79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~  126 (181)
T PF09439_consen   79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT  126 (181)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred             EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence            999999874 3344444 44555544333  35799999999999855

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.58  E-value=9e-14  Score=106.37  Aligned_cols=188  Identities=21%  Similarity=0.358  Sum_probs=135.1

Q ss_pred             CCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEE--CCeEEEEEEEeCCChhhhhhhhhhhhc
Q 027856            7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRC--DDKIVKAQIWDTAGQERYRAITSAYYR   84 (217)
Q Consensus         7 ~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~   84 (217)
                      ..+....=+|+|+|..|+||||||.+|.+..   .+.+..+..+....++-  .+....+.+|-..|+--...+....+.
T Consensus        46 ~sklpsgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~  122 (473)
T KOG3905|consen   46 RSKLPSGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALP  122 (473)
T ss_pred             cccCCCCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhccc
Confidence            3444556789999999999999999999876   33344555555555433  233468889999997666565555544


Q ss_pred             CC----cEEEEEEECCChhhH-HHHHHHHHHHHhhcCC------------------------------------------
Q 027856           85 GA----VGALLVYDVTRHVTF-ENVERWLKELRDHTDS------------------------------------------  117 (217)
Q Consensus        85 ~~----d~ii~v~d~~~~~s~-~~~~~~~~~l~~~~~~------------------------------------------  117 (217)
                      ..    -.+|++.|.+++.++ +.+..|...+.+..+.                                          
T Consensus       123 ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~  202 (473)
T KOG3905|consen  123 ATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGS  202 (473)
T ss_pred             ccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccC
Confidence            33    368889999999654 4456777766533321                                          


Q ss_pred             -------------------CCcEEEEEeCCCCCC----ccCC-------CHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Q 027856          118 -------------------NIVIMLVGNKADLRH----LRAV-------STEDATAFAERENTFFMETSALESMNVENAF  167 (217)
Q Consensus       118 -------------------~~p~ivv~nK~D~~~----~~~~-------~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  167 (217)
                                         ++|++||++|+|...    +.+.       ....++.||.++|+.+|.+|++...||+-++
T Consensus       203 ~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidlly  282 (473)
T KOG3905|consen  203 SADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLY  282 (473)
T ss_pred             ccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHH
Confidence                               789999999999832    1111       1233577888899999999999999999999


Q ss_pred             HHHHHHHHHH-HhhhhhccCCCCCCCCCCce
Q 027856          168 TEVLTQIYRV-VSRKALEIGDDPAALPKGQT  197 (217)
Q Consensus       168 ~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~  197 (217)
                      ..|++..+.. +...++.++++...+|-|=.
T Consensus       283 KYivhr~yG~~fttpAlVVEkdaVfIPAGWD  313 (473)
T KOG3905|consen  283 KYIVHRSYGFPFTTPALVVEKDAVFIPAGWD  313 (473)
T ss_pred             HHHHHHhcCcccCCcceEeecceeEeccCCC
Confidence            9999999887 55566777777777766543

>TIGR00503 prfC peptide chain release factor 3

Probab=99.58  E-value=4.8e-14  Score=118.06  Aligned_cols=119  Identities=17%  Similarity=0.192  Sum_probs=82.6

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhC--cCCC---C---------------CcccceeEeEEEEEEECCeEEEEEEEeC
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRN--EFSL---E---------------SKSTIGVEFATRSIRCDDKIVKAQIWDT   69 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~--~~~~---~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt   69 (217)
                      .....+|+|+|++++|||||+++|+..  ....   .               .....+++.......++...+.+.+|||
T Consensus         8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT   87 (527)
T TIGR00503         8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT   87 (527)
T ss_pred             hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence            355789999999999999999998632  1110   0               0011233344444445555689999999


Q ss_pred             CChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856           70 AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        70 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  132 (217)
                      ||+..+.......+..+|++++|+|+++.... ....++..+..   .+.|+++++||+|+..
T Consensus        88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~~PiivviNKiD~~~  146 (527)
T TIGR00503        88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVET-RTRKLMEVTRL---RDTPIFTFMNKLDRDI  146 (527)
T ss_pred             CChhhHHHHHHHHHHhCCEEEEEEECCCCCCH-HHHHHHHHHHh---cCCCEEEEEECccccC
Confidence            99988887677788999999999999875321 12344444333   3789999999999854

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.56  E-value=2.7e-13  Score=110.14  Aligned_cols=153  Identities=18%  Similarity=0.147  Sum_probs=113.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCC--CcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLE--SKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      .++=|-|+|+-..|||||+..|-+......  ..-|..+.-+...++ +|  -.++|.||||+..|..++..-..-+|++
T Consensus       152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G--~~iTFLDTPGHaAF~aMRaRGA~vtDIv  228 (683)
T KOG1145|consen  152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SG--KSITFLDTPGHAAFSAMRARGANVTDIV  228 (683)
T ss_pred             CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CC--CEEEEecCCcHHHHHHHHhccCccccEE
Confidence            467788999999999999999998877543  333444444444444 44  5889999999999999999989999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHH-------HcC--CcEEEEecCCC
Q 027856           90 LLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAE-------REN--TFFMETSALES  160 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-------~~~--~~~~~~Sa~~~  160 (217)
                      ++|+.++|.--.    ...+.+......+.|+++++||+|.++   .+.+...+-..       .+|  +.++++||++|
T Consensus       229 VLVVAadDGVmp----QT~EaIkhAk~A~VpiVvAinKiDkp~---a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g  301 (683)
T KOG1145|consen  229 VLVVAADDGVMP----QTLEAIKHAKSANVPIVVAINKIDKPG---ANPEKVKRELLSQGIVVEDLGGDVQVIPISALTG  301 (683)
T ss_pred             EEEEEccCCccH----hHHHHHHHHHhcCCCEEEEEeccCCCC---CCHHHHHHHHHHcCccHHHcCCceeEEEeecccC
Confidence            999999986432    233344444446899999999999764   33333332222       243  45999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 027856          161 MNVENAFTEVLTQI  174 (217)
Q Consensus       161 ~~i~~~~~~i~~~~  174 (217)
                      +|++.+-+.++-..
T Consensus       302 ~nl~~L~eaill~A  315 (683)
T KOG1145|consen  302 ENLDLLEEAILLLA  315 (683)
T ss_pred             CChHHHHHHHHHHH
Confidence            99999888877543

>PRK00007 elongation factor G; Reviewed

Probab=99.56  E-value=1.2e-13  Score=119.75  Aligned_cols=118  Identities=15%  Similarity=0.112  Sum_probs=82.4

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCc--CCC---C-------------CcccceeEeEEEEEEECCeEEEEEEEeCC
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNE--FSL---E-------------SKSTIGVEFATRSIRCDDKIVKAQIWDTA   70 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~--~~~---~-------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~   70 (217)
                      ..+...+|+|+|++++|||||+++|+...  ...   .             .....+.+.....+.+.  ...+.++|||
T Consensus         6 ~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~--~~~~~liDTP   83 (693)
T PRK00007          6 PLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--DHRINIIDTP   83 (693)
T ss_pred             cccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC--CeEEEEEeCC
Confidence            45567899999999999999999997421  100   0             11223333334444444  4689999999


Q ss_pred             ChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856           71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        71 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  132 (217)
                      |+..+.......+..+|++++|+|+......+... .+..+..   .++|+++++||+|+..
T Consensus        84 G~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~-~~~~~~~---~~~p~iv~vNK~D~~~  141 (693)
T PRK00007         84 GHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSET-VWRQADK---YKVPRIAFVNKMDRTG  141 (693)
T ss_pred             CcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHH-HHHHHHH---cCCCEEEEEECCCCCC
Confidence            98877766777788999999999998765444333 3333333   3789999999999875

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.56  E-value=3.8e-14  Score=98.06  Aligned_cols=153  Identities=16%  Similarity=0.245  Sum_probs=110.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .=|++++|-.|+|||||++-|-........ ||..  .....+.+.+  .+++-+|..|+...+..|..++..+|++++.
T Consensus        20 ~gKllFlGLDNAGKTTLLHMLKdDrl~qhv-PTlH--PTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l   94 (193)
T KOG0077|consen   20 FGKLLFLGLDNAGKTTLLHMLKDDRLGQHV-PTLH--PTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYL   94 (193)
T ss_pred             CceEEEEeecCCchhhHHHHHccccccccC-CCcC--CChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence            348999999999999999988877654322 4432  2233344444  6899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHH------H--------cC---CcEEE
Q 027856           93 YDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAE------R--------EN---TFFME  154 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------~--------~~---~~~~~  154 (217)
                      +|+.+.+-+.+...-++.+.... -...|+++.+||+|....  ++.++.....-      .        .+   ...|.
T Consensus        95 vda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a--~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfm  172 (193)
T KOG0077|consen   95 VDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA--ASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFM  172 (193)
T ss_pred             eehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc--ccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEE
Confidence            99999988877765555544333 248999999999998762  34444332211      0        11   23788


Q ss_pred             EecCCCCCHHHHHHHHHH
Q 027856          155 TSALESMNVENAFTEVLT  172 (217)
Q Consensus       155 ~Sa~~~~~i~~~~~~i~~  172 (217)
                      ||...+.+..+.|.|+..
T Consensus       173 csi~~~~gy~e~fkwl~q  190 (193)
T KOG0077|consen  173 CSIVRKMGYGEGFKWLSQ  190 (193)
T ss_pred             EEEEccCccceeeeehhh
Confidence            888888887777777654

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.54  E-value=7.3e-14  Score=112.28  Aligned_cols=171  Identities=16%  Similarity=0.172  Sum_probs=124.5

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChh----------hhhhhhh
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE----------RYRAITS   80 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~   80 (217)
                      .....++++|.|++|||||++.++.......+.++++...+...+.+..  ..++++||||.-          +..++ .
T Consensus       166 p~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykY--lrwQViDTPGILD~plEdrN~IEmqsI-T  242 (620)
T KOG1490|consen  166 PNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKY--LRWQVIDTPGILDRPEEDRNIIEMQII-T  242 (620)
T ss_pred             CCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhe--eeeeecCCccccCcchhhhhHHHHHHH-H
Confidence            4567899999999999999999998887776666665555555544333  688999999921          11111 1


Q ss_pred             hhhcCCcEEEEEEECCC--hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHH---HHHHHHHcCCcEEEE
Q 027856           81 AYYRGAVGALLVYDVTR--HVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTED---ATAFAERENTFFMET  155 (217)
Q Consensus        81 ~~~~~~d~ii~v~d~~~--~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~---~~~~~~~~~~~~~~~  155 (217)
                      ...+---+++|+.|++.  ..|...--.++..+...+. +.|+|+|+||+|+.....++.+.   +......-+++++++
T Consensus       243 ALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~t  321 (620)
T KOG1490|consen  243 ALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQT  321 (620)
T ss_pred             HHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-CCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEe
Confidence            12222346899999885  5677766678888877764 88999999999997765555433   333444455899999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHHhhhhhcc
Q 027856          156 SALESMNVENAFTEVLTQIYRVVSRKALEI  185 (217)
Q Consensus       156 Sa~~~~~i~~~~~~i~~~~~~~~~~~~~~~  185 (217)
                      |..+.+|+-++-...++.++.++-+..+.-
T Consensus       322 S~~~eegVm~Vrt~ACe~LLa~RVE~Klks  351 (620)
T KOG1490|consen  322 SCVQEEGVMDVRTTACEALLAARVEQKLKS  351 (620)
T ss_pred             cccchhceeeHHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999998877664444

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.54  E-value=1.6e-13  Score=108.41  Aligned_cols=154  Identities=19%  Similarity=0.158  Sum_probs=103.1

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcC--CC---------------------------CCcccceeEeEEEEEEECCeE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEF--SL---------------------------ESKSTIGVEFATRSIRCDDKI   61 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~~   61 (217)
                      ...++++++|+..+|||||+-+|+-..-  +.                           ......|.+.......+.-..
T Consensus         5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k   84 (428)
T COG5256           5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK   84 (428)
T ss_pred             CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence            4578999999999999999999885311  00                           001123445555555555555


Q ss_pred             EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhh---H--HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC
Q 027856           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVT---F--ENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV  136 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~--~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~  136 (217)
                      +.++++|+||++.|...+-.-..++|+.|+|+|+++.+.   +  +....-...|....+ -..+||++||+|..+.++-
T Consensus        85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-i~~lIVavNKMD~v~wde~  163 (428)
T COG5256          85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-IKQLIVAVNKMDLVSWDEE  163 (428)
T ss_pred             ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-CceEEEEEEcccccccCHH
Confidence            789999999999999988888999999999999988631   1  000111111222221 3457889999999875554


Q ss_pred             CHHHHHHH----HHHc-----CCcEEEEecCCCCCHHH
Q 027856          137 STEDATAF----AERE-----NTFFMETSALESMNVEN  165 (217)
Q Consensus       137 ~~~~~~~~----~~~~-----~~~~~~~Sa~~~~~i~~  165 (217)
                      .++++...    .+..     ++.|+++|+..|.|+.+
T Consensus       164 rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         164 RFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             HHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence            44444322    2232     35699999999999754

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.53  E-value=2.5e-13  Score=105.25  Aligned_cols=125  Identities=15%  Similarity=0.109  Sum_probs=74.6

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCc-ccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhh-------hhhh
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAI-------TSAY   82 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~   82 (217)
                      ...++|+++|.+|+||||++|+|++........ ...+..........++  ..+.+|||||.......       ...+
T Consensus        36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~~  113 (313)
T TIGR00991        36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKRF  113 (313)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence            567899999999999999999999987543221 1112222222233344  68999999995432111       1111


Q ss_pred             h--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCC--CCcEEEEEeCCCCCCccCCC
Q 027856           83 Y--RGAVGALLVYDVTRHVTFENVERWLKELRDHTDS--NIVIMLVGNKADLRHLRAVS  137 (217)
Q Consensus        83 ~--~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~p~ivv~nK~D~~~~~~~~  137 (217)
                      +  ...|+++||..++.....+.-...++.+...++.  -.++++++|+.|....+..+
T Consensus       114 l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~  172 (313)
T TIGR00991       114 LLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLE  172 (313)
T ss_pred             hhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCC
Confidence            1  2689999996654321111112344444444432  25689999999976433333

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.53  E-value=2e-13  Score=102.20  Aligned_cols=160  Identities=19%  Similarity=0.187  Sum_probs=91.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCc--ccceeEeEEEEEEECCeEEEEEEEeCCChh-------hhhh-h---hh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESK--STIGVEFATRSIRCDDKIVKAQIWDTAGQE-------RYRA-I---TS   80 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-------~~~~-~---~~   80 (217)
                      ++|+|+|.+|+||||++|.+++........  ...+.........+++  ..+.++||||.-       .... +   ..
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            589999999999999999999988754432  1222233333345566  578999999921       1111 1   12


Q ss_pred             hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCC--CcEEEEEeCCCCCCccCCC-------HHHHHHHHHHcCCc
Q 027856           81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSN--IVIMLVGNKADLRHLRAVS-------TEDATAFAERENTF  151 (217)
Q Consensus        81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~p~ivv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~  151 (217)
                      ....+.|++++|+... +-+-.+ ...+..+...++..  ..++||+|..|......+.       ...+.++....+-.
T Consensus        79 ~~~~g~ha~llVi~~~-r~t~~~-~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R  156 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLG-RFTEED-REVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR  156 (212)
T ss_dssp             HTTT-ESEEEEEEETT-B-SHHH-HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hccCCCeEEEEEEecC-cchHHH-HHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence            2346789999999998 333222 23344444444322  4588888988875533311       12234455556667


Q ss_pred             EEEEecC------CCCCHHHHHHHHHHHHHHH
Q 027856          152 FMETSAL------ESMNVENAFTEVLTQIYRV  177 (217)
Q Consensus       152 ~~~~Sa~------~~~~i~~~~~~i~~~~~~~  177 (217)
                      |..++..      ....+.++|+.|-+.+.++
T Consensus       157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n  188 (212)
T PF04548_consen  157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQEN  188 (212)
T ss_dssp             EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence            8877776      2234666666666555544

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.53  E-value=3.2e-13  Score=102.96  Aligned_cols=122  Identities=19%  Similarity=0.209  Sum_probs=74.8

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcc-cceeEeEEEEEEECCeEEEEEEEeCCChhhhh------h-h--
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKS-TIGVEFATRSIRCDDKIVKAQIWDTAGQERYR------A-I--   78 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~-~--   78 (217)
                      .....++|+|+|.+|+|||||+|+|++......... ..+..........++  ..+.+|||||.....      . .  
T Consensus        27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~  104 (249)
T cd01853          27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILS  104 (249)
T ss_pred             hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHH
Confidence            456789999999999999999999999875433211 222222222333344  578999999943221      0 0  


Q ss_pred             -hhhhh--cCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCC--CcEEEEEeCCCCCCc
Q 027856           79 -TSAYY--RGAVGALLVYDVTRHV-TFENVERWLKELRDHTDSN--IVIMLVGNKADLRHL  133 (217)
Q Consensus        79 -~~~~~--~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~--~p~ivv~nK~D~~~~  133 (217)
                       ...++  ...|++++|..++... ...+ ...+..+....+..  .++++|.||+|....
T Consensus       105 ~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p  164 (249)
T cd01853         105 SIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASSPP  164 (249)
T ss_pred             HHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence             11223  2578888887665432 2221 23444444443322  568999999998643

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PRK12740 elongation factor G; Reviewed

Probab=99.53  E-value=6e-13  Score=115.49  Aligned_cols=107  Identities=21%  Similarity=0.262  Sum_probs=75.2

Q ss_pred             EcCCCCCHHHHHHHHhhCcCCC------------------CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhh
Q 027856           19 IGDSGVGKSNLLSRFTRNEFSL------------------ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITS   80 (217)
Q Consensus        19 ~G~~~~GKSsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~   80 (217)
                      +|++++|||||+++|+...-..                  ......+.......+.+.+  +.+.+|||||+..+...+.
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~   78 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE   78 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence            6999999999999996532110                  0011223333333444444  7899999999988877788


Q ss_pred             hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027856           81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~  131 (217)
                      ..+..+|++++|+|++..........| ..+..   .+.|+++|+||+|..
T Consensus        79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~  125 (668)
T PRK12740         79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRA  125 (668)
T ss_pred             HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCC
Confidence            889999999999999887655443333 33332   378999999999985

>PTZ00258 GTP-binding protein; Provisional

Probab=99.52  E-value=4.9e-13  Score=107.34  Aligned_cols=87  Identities=18%  Similarity=0.182  Sum_probs=62.6

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeE---------------EEEEEEeCCChhh
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKI---------------VKAQIWDTAGQER   74 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~   74 (217)
                      ....++|+++|.||+|||||+|+|++........+..+.+.....+.+.+..               .++.++||||...
T Consensus        18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~   97 (390)
T PTZ00258         18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK   97 (390)
T ss_pred             CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence            4567899999999999999999999887655444555556656666554332               3589999999431


Q ss_pred             -------hhhhhhhhhcCCcEEEEEEECC
Q 027856           75 -------YRAITSAYYRGAVGALLVYDVT   96 (217)
Q Consensus        75 -------~~~~~~~~~~~~d~ii~v~d~~   96 (217)
                             ........++.+|++++|+|+.
T Consensus        98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence                   2222334568899999999984

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.52  E-value=4.6e-13  Score=110.00  Aligned_cols=184  Identities=21%  Similarity=0.392  Sum_probs=126.7

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEEC--CeEEEEEEEeCCChhhhhhhhhhhhcCC
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCD--DKIVKAQIWDTAGQERYRAITSAYYRGA   86 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   86 (217)
                      .....-.|+|+|..++||||||.+|.+..   .+.++.+.+|....+.-+  +....+.+|-..|...+..+....+...
T Consensus        21 ~~~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~   97 (472)
T PF05783_consen   21 KLPSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPE   97 (472)
T ss_pred             cCCCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcc
Confidence            33445689999999999999999987654   344566666666655332  2235789999998777777766655432


Q ss_pred             ----cEEEEEEECCChhhH-HHHHHHHHHHHhhcC---------------------------------------------
Q 027856           87 ----VGALLVYDVTRHVTF-ENVERWLKELRDHTD---------------------------------------------  116 (217)
Q Consensus        87 ----d~ii~v~d~~~~~s~-~~~~~~~~~l~~~~~---------------------------------------------  116 (217)
                          -.+++|+|.+.|..+ +.+..|+..++....                                             
T Consensus        98 ~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~  177 (472)
T PF05783_consen   98 NLPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSS  177 (472)
T ss_pred             cccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccc
Confidence                368899999998754 234445444431110                                             


Q ss_pred             -----------------CCCcEEEEEeCCCCCCc----cC-------CCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 027856          117 -----------------SNIVIMLVGNKADLRHL----RA-------VSTEDATAFAERENTFFMETSALESMNVENAFT  168 (217)
Q Consensus       117 -----------------~~~p~ivv~nK~D~~~~----~~-------~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  168 (217)
                                       -++|++||++|+|....    ..       ....-++.+|..+|+.+|++|++...+++.++.
T Consensus       178 ~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~  257 (472)
T PF05783_consen  178 DDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYK  257 (472)
T ss_pred             ccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHH
Confidence                             05899999999997421    11       112335677788999999999999999999999


Q ss_pred             HHHHHHHHHHhh-hhhccCCCCCCCCCC
Q 027856          169 EVLTQIYRVVSR-KALEIGDDPAALPKG  195 (217)
Q Consensus       169 ~i~~~~~~~~~~-~~~~~~~~~~~~~~~  195 (217)
                      .|.+.++..-.. ....+..+.-.+|.|
T Consensus       258 yi~h~l~~~~f~~~~~vv~~d~ifIP~G  285 (472)
T PF05783_consen  258 YILHRLYGFPFKTPAQVVERDAIFIPAG  285 (472)
T ss_pred             HHHHHhccCCCCCCceeecccccccCCC
Confidence            999988876443 344455566666655

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.51  E-value=1.5e-13  Score=90.81  Aligned_cols=136  Identities=22%  Similarity=0.227  Sum_probs=96.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCC----hhhhhhhhhhhhcCCcEEE
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAG----QERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----~~~~~~~~~~~~~~~d~ii   90 (217)
                      ||+++|..|+|||||.+.|-|...  .+..|...+       +++.    -.+||||    +..+.+........+|+++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQAve-------~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~   69 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQAVE-------FNDK----GDIDTPGEYFEHPRWYHALITTLQDADVII   69 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchh--hhcccceee-------ccCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence            789999999999999999988763  232333221       2221    2689999    3444444555667899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCc-EEEEecCCCCCHHHHHHH
Q 027856           91 LVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTE  169 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~  169 (217)
                      +|-++++++|.-     -..+...  ...|+|-|++|.|+.+  ....+..+.+..+-|.. +|++|+.++.|++++++.
T Consensus        70 ~v~~and~~s~f-----~p~f~~~--~~k~vIgvVTK~DLae--d~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~  140 (148)
T COG4917          70 YVHAANDPESRF-----PPGFLDI--GVKKVIGVVTKADLAE--DADISLVKRWLREAGAEPIFETSAVDNQGVEELVDY  140 (148)
T ss_pred             eeecccCccccC-----Ccccccc--cccceEEEEecccccc--hHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence            999999986521     1111111  1456889999999985  23456667788888865 999999999999999988


Q ss_pred             HHH
Q 027856          170 VLT  172 (217)
Q Consensus       170 i~~  172 (217)
                      +..
T Consensus       141 L~~  143 (148)
T COG4917         141 LAS  143 (148)
T ss_pred             HHh
Confidence            764

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.51  E-value=1.1e-13  Score=120.30  Aligned_cols=118  Identities=16%  Similarity=0.162  Sum_probs=82.4

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhC---------------cCCCC---CcccceeEeEEEEEEECCeEEEEEEEeCCC
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRN---------------EFSLE---SKSTIGVEFATRSIRCDDKIVKAQIWDTAG   71 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~---------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   71 (217)
                      .+...+|+++|+.++|||||+++|+..               .+...   ...|.........+.+++..+.+.+|||||
T Consensus        16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG   95 (720)
T TIGR00490        16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPG   95 (720)
T ss_pred             cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCC
Confidence            355789999999999999999999753               11110   112332222233334566778999999999


Q ss_pred             hhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027856           72 QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        72 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~  131 (217)
                      +..+.......+..+|++++|+|+......+....|.. +..   .+.|+++++||+|..
T Consensus        96 ~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~  151 (720)
T TIGR00490        96 HVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ-ALK---ENVKPVLFINKVDRL  151 (720)
T ss_pred             ccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH-HHH---cCCCEEEEEEChhcc
Confidence            98888778888999999999999987543332222222 222   367888999999985

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.50  E-value=5.5e-13  Score=103.14  Aligned_cols=151  Identities=24%  Similarity=0.219  Sum_probs=107.9

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCC------------C-------------------CCcccceeEeEEEEEEEC
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFS------------L-------------------ESKSTIGVEFATRSIRCD   58 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~------------~-------------------~~~~~~~~~~~~~~~~~~   58 (217)
                      ....+|.+-+|+-.-||||||-||+.....            .                   +.....|++..+.+..+.
T Consensus         3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs   82 (431)
T COG2895           3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS   82 (431)
T ss_pred             cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence            356789999999999999999999974210            0                   001134555666665555


Q ss_pred             CeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCC
Q 027856           59 DKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS  137 (217)
Q Consensus        59 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~  137 (217)
                      -...++.+-||||++.|...+..-...+|+.|+++|+...-.-+.- +.++..+..    -..+++++||+|+.+-++..
T Consensus        83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLG----IrhvvvAVNKmDLvdy~e~~  158 (431)
T COG2895          83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLG----IRHVVVAVNKMDLVDYSEEV  158 (431)
T ss_pred             cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhC----CcEEEEEEeeecccccCHHH
Confidence            5557999999999999999888888899999999999654321111 234444443    35688999999998865544


Q ss_pred             HHHH----HHHHHHcCCc---EEEEecCCCCCHH
Q 027856          138 TEDA----TAFAERENTF---FMETSALESMNVE  164 (217)
Q Consensus       138 ~~~~----~~~~~~~~~~---~~~~Sa~~~~~i~  164 (217)
                      .+++    ..|+..+++.   ++++||..|.|+-
T Consensus       159 F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         159 FEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             HHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence            4444    4556666654   9999999999874

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.49  E-value=1.3e-12  Score=94.30  Aligned_cols=114  Identities=22%  Similarity=0.288  Sum_probs=78.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhc---CCcEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYR---GAVGA   89 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~---~~d~i   89 (217)
                      .-.|+++|..+||||+|.-.|..+.....+.   .+......+.+...  .++++|.||+.+.+.....+++   .+-++
T Consensus        38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tvt---Siepn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akai  112 (238)
T KOG0090|consen   38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVT---SIEPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAI  112 (238)
T ss_pred             CCcEEEEecCCCCceeeeeehhcCCccCeee---eeccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeE
Confidence            3579999999999999999988774433221   12222333333332  4799999999999877766666   78999


Q ss_pred             EEEEECCC-hhhHHHH-HHHHHHHHhh--cCCCCcEEEEEeCCCCC
Q 027856           90 LLVYDVTR-HVTFENV-ERWLKELRDH--TDSNIVIMLVGNKADLR  131 (217)
Q Consensus        90 i~v~d~~~-~~s~~~~-~~~~~~l~~~--~~~~~p~ivv~nK~D~~  131 (217)
                      +||+|... .....++ +.++..+...  ....+|+++++||.|+.
T Consensus       113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~  158 (238)
T KOG0090|consen  113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF  158 (238)
T ss_pred             EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhh
Confidence            99999653 2233333 4455555444  34689999999999985

>PRK13768 GTPase; Provisional

Probab=99.46  E-value=1.2e-12  Score=100.50  Aligned_cols=109  Identities=17%  Similarity=0.082  Sum_probs=69.5

Q ss_pred             EEEEEeCCChhhhh---hhhhhhhc---C--CcEEEEEEECCChhhHHHHH--HHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856           63 KAQIWDTAGQERYR---AITSAYYR---G--AVGALLVYDVTRHVTFENVE--RWLKELRDHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        63 ~~~l~Dt~G~~~~~---~~~~~~~~---~--~d~ii~v~d~~~~~s~~~~~--~~~~~l~~~~~~~~p~ivv~nK~D~~~  132 (217)
                      .+.+||+||+.+..   ..+..+++   .  .+++++++|+.......+..  .|+...... ..+.|+++|+||+|+..
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~  176 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS  176 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence            68999999976532   23322222   2  89999999997654433322  222222211 13799999999999865


Q ss_pred             ccCCCHHHHHH----------------------------HHHHcC--CcEEEEecCCCCCHHHHHHHHHHHH
Q 027856          133 LRAVSTEDATA----------------------------FAEREN--TFFMETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       133 ~~~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~~  174 (217)
                      ..+.  ++...                            ..+..+  ..++++|++++.|+++++++|.+.+
T Consensus       177 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l  246 (253)
T PRK13768        177 EEEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF  246 (253)
T ss_pred             chhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence            3221  11111                            112223  4689999999999999999998765

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.43  E-value=4.1e-12  Score=110.97  Aligned_cols=118  Identities=17%  Similarity=0.142  Sum_probs=80.1

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCC-----------C-----cccceeEeE--EEEEEECCeEEEEEEEeCCC
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLE-----------S-----KSTIGVEFA--TRSIRCDDKIVKAQIWDTAG   71 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~-----------~-----~~~~~~~~~--~~~~~~~~~~~~~~l~Dt~G   71 (217)
                      .+...+|+++|+.++|||||+.+|+...-...           +     ...+++...  ...+.+++..+.+.|+||||
T Consensus        17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG   96 (731)
T PRK07560         17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG   96 (731)
T ss_pred             hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence            35567899999999999999999986321100           0     001111111  22223355568899999999


Q ss_pred             hhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027856           72 QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        72 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~  131 (217)
                      +..+.......+..+|++++|+|+......+....|... ...   +.|.++++||+|..
T Consensus        97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~-~~~---~~~~iv~iNK~D~~  152 (731)
T PRK07560         97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQA-LRE---RVKPVLFINKVDRL  152 (731)
T ss_pred             ccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHH-HHc---CCCeEEEEECchhh
Confidence            998888888889999999999999876443332333332 222   56789999999975

>TIGR00101 ureG urease accessory protein UreG

Probab=99.43  E-value=6.1e-12  Score=93.07  Aligned_cols=102  Identities=14%  Similarity=0.068  Sum_probs=64.7

Q ss_pred             EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHH
Q 027856           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDA  141 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  141 (217)
                      ....++++.|..-..... .  .-+|.++.|+|+.+..+...  .+...+.      ..=++++||+|+.+......+..
T Consensus        92 ~D~iiIEt~G~~l~~~~~-~--~l~~~~i~vvD~~~~~~~~~--~~~~qi~------~ad~~~~~k~d~~~~~~~~~~~~  160 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFS-P--ELADLTIFVIDVAAGDKIPR--KGGPGIT------RSDLLVINKIDLAPMVGADLGVM  160 (199)
T ss_pred             CCEEEEECCCCCcccccc-h--hhhCcEEEEEEcchhhhhhh--hhHhHhh------hccEEEEEhhhccccccccHHHH
Confidence            466778888832111111 1  12578999999987665321  1112221      11279999999975323334444


Q ss_pred             HHHHHH--cCCcEEEEecCCCCCHHHHHHHHHHHH
Q 027856          142 TAFAER--ENTFFMETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       142 ~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~  174 (217)
                      .+..+.  .+.+++++||++|+|++++|++|.+++
T Consensus       161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~  195 (199)
T TIGR00101       161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA  195 (199)
T ss_pred             HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            445444  457899999999999999999998754

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.43  E-value=8.1e-12  Score=99.32  Aligned_cols=83  Identities=19%  Similarity=0.162  Sum_probs=58.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeE---------------EEEEEEeCCChhh----
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKI---------------VKAQIWDTAGQER----   74 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~----   74 (217)
                      ++|+++|.||+|||||+|+|++........+..+.+.....+.+.+..               ..+.++|+||...    
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            789999999999999999999988543333555555555555554421               2589999999432    


Q ss_pred             ---hhhhhhhhhcCCcEEEEEEECC
Q 027856           75 ---YRAITSAYYRGAVGALLVYDVT   96 (217)
Q Consensus        75 ---~~~~~~~~~~~~d~ii~v~d~~   96 (217)
                         ........++.+|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence               1122233467999999999984

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.42  E-value=2.1e-12  Score=93.26  Aligned_cols=63  Identities=25%  Similarity=0.258  Sum_probs=45.8

Q ss_pred             EEEEEeCCChh----hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 027856           63 KAQIWDTAGQE----RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKA  128 (217)
Q Consensus        63 ~~~l~Dt~G~~----~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~  128 (217)
                      .+.|+||||..    .....+..++..+|++++|.+++...+-.....+.......   ...+++|.||.
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence            57899999953    23356777889999999999999876655555566555544   44488999984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.42  E-value=1.9e-12  Score=114.44  Aligned_cols=119  Identities=21%  Similarity=0.191  Sum_probs=82.8

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCC--C--------------CCcccceeEeEEEEEEE--------------C
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFS--L--------------ESKSTIGVEFATRSIRC--------------D   58 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~--~--------------~~~~~~~~~~~~~~~~~--------------~   58 (217)
                      ..+...+|+|+|+.++|||||+++|+...-.  .              +.....++......+.+              .
T Consensus        15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~   94 (843)
T PLN00116         15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD   94 (843)
T ss_pred             CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence            3566789999999999999999999864311  0              00011122211222222              2


Q ss_pred             CeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027856           59 DKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        59 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~  131 (217)
                      +..+.++++||||+..|.......+..+|++|+|+|+...........|.... .   .++|+++++||+|..
T Consensus        95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~-~---~~~p~i~~iNK~D~~  163 (843)
T PLN00116         95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL-G---ERIRPVLTVNKMDRC  163 (843)
T ss_pred             CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHH-H---CCCCEEEEEECCccc
Confidence            23578899999999999888888899999999999998875444333333332 2   378999999999986

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.41  E-value=1.6e-12  Score=99.46  Aligned_cols=168  Identities=21%  Similarity=0.204  Sum_probs=108.8

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcC---CCCCccccee---------------E---eEEEEEEEC------CeEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEF---SLESKSTIGV---------------E---FATRSIRCD------DKIVK   63 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~---~~~~~~~~~~---------------~---~~~~~~~~~------~~~~~   63 (217)
                      +..++|.++|+-..|||||.++|.+--.   +.+....+++               .   .+...-.+.      .-...
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            6789999999999999999999998311   0000000000               0   000000000      11247


Q ss_pred             EEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCCh----hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC--CC
Q 027856           64 AQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH----VTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA--VS  137 (217)
Q Consensus        64 ~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~  137 (217)
                      +.|+|.||++-+-....+-..-.|+.++|++++.+    ++-+++    ..+...  .-..++++=||+|+...+.  .+
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl----~AleIi--gik~iiIvQNKIDlV~~E~AlE~  161 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHL----MALEII--GIKNIIIVQNKIDLVSRERALEN  161 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHH----HHHhhh--ccceEEEEecccceecHHHHHHH
Confidence            88999999988877776666667999999999864    343332    222222  1356888999999976432  34


Q ss_pred             HHHHHHHHHH---cCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhhhhccCCC
Q 027856          138 TEDATAFAER---ENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDD  188 (217)
Q Consensus       138 ~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~  188 (217)
                      ++++++|.+.   .+++++++||..+.|++.+++.|.+++    ...+.+..+.
T Consensus       162 y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~I----ptP~rd~~~~  211 (415)
T COG5257         162 YEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYI----PTPERDLDKP  211 (415)
T ss_pred             HHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhC----CCCccCCCCC
Confidence            5667777765   467899999999999998887766554    4444444443

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.41  E-value=3.3e-11  Score=107.11  Aligned_cols=155  Identities=17%  Similarity=0.154  Sum_probs=97.2

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCe----------------EEEEEEEeCCChh
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK----------------IVKAQIWDTAGQE   73 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~l~Dt~G~~   73 (217)
                      .+..+--+++++    ||||+.++.+......-.-.++-+.-...+..+..                .-.+.||||||++
T Consensus       462 ~~~~~~~~~~~~----KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe  537 (1049)
T PRK14845        462 THNFIANGILVH----NTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHE  537 (1049)
T ss_pred             cCcceeeeeecc----cccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcH
Confidence            344444455544    99999999998875432222222222222222210                0137999999999


Q ss_pred             hhhhhhhhhhcCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC--------------
Q 027856           74 RYRAITSAYYRGAVGALLVYDVTR---HVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV--------------  136 (217)
Q Consensus        74 ~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--------------  136 (217)
                      .+..+....+..+|++++|+|+++   +.+.+.+    ..+..   .+.|+++|+||+|+...-..              
T Consensus       538 ~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I----~~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~  610 (1049)
T PRK14845        538 AFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAI----NILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQD  610 (1049)
T ss_pred             HHHHHHHhhcccCCEEEEEEECcccCCHhHHHHH----HHHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhH
Confidence            998888778889999999999987   3443333    22322   26899999999998531110              


Q ss_pred             --CHHHHH----HH---HHH---------------cCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027856          137 --STEDAT----AF---AER---------------ENTFFMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       137 --~~~~~~----~~---~~~---------------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  175 (217)
                        ...+..    .+   ...               ..++++++||++|+|+++++.++.....
T Consensus       611 ~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~  673 (1049)
T PRK14845        611 QHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ  673 (1049)
T ss_pred             HHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence              011110    00   011               1356999999999999999987765443

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.39  E-value=9.2e-13  Score=99.90  Aligned_cols=112  Identities=16%  Similarity=0.091  Sum_probs=59.1

Q ss_pred             EEEEEeCCChhhhhhhhhhhh--------cCCcEEEEEEECCChhhHHH-HHHHHHHHHhhcCCCCcEEEEEeCCCCCCc
Q 027856           63 KAQIWDTAGQERYRAITSAYY--------RGAVGALLVYDVTRHVTFEN-VERWLKELRDHTDSNIVIMLVGNKADLRHL  133 (217)
Q Consensus        63 ~~~l~Dt~G~~~~~~~~~~~~--------~~~d~ii~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~  133 (217)
                      .+.++|||||.++...+....        ...-++++++|.....+... +..++..+.....-+.|.+.|+||+|+...
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~  171 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK  171 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence            689999999987765554433        34457888999764433222 233333322222238999999999999762


Q ss_pred             c---CC----C------------HHHHHHHHHH---cC-C-cEEEEecCCCCCHHHHHHHHHHHH
Q 027856          134 R---AV----S------------TEDATAFAER---EN-T-FFMETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       134 ~---~~----~------------~~~~~~~~~~---~~-~-~~~~~Sa~~~~~i~~~~~~i~~~~  174 (217)
                      .   ..    .            ....+++++-   .+ . .++++|+.+++++.+++..|-+.+
T Consensus       172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            1   00    0            0011112221   23 3 599999999999999998887654

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PTZ00416 elongation factor 2; Provisional

Probab=99.39  E-value=3.4e-12  Score=112.65  Aligned_cols=118  Identities=21%  Similarity=0.225  Sum_probs=80.9

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCC----------------CCcccceeEeEEEEEEEC--------CeEEEEE
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSL----------------ESKSTIGVEFATRSIRCD--------DKIVKAQ   65 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~--------~~~~~~~   65 (217)
                      .+...+|+++|+.++|||||+++|+...-..                +.....++......+.+.        +..+.+.
T Consensus        16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~   95 (836)
T PTZ00416         16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN   95 (836)
T ss_pred             ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence            3556799999999999999999998732110                000111122112222222        2257899


Q ss_pred             EEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027856           66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        66 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~  131 (217)
                      |+||||+..+.......++.+|++++|+|+...-..+.. ..+..+..   .+.|+++++||+|+.
T Consensus        96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~~~~---~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQALQ---ERIRPVLFINKVDRA  157 (836)
T ss_pred             EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHHHHH---cCCCEEEEEEChhhh
Confidence            999999998888888889999999999999886544432 33333333   368999999999986

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.39  E-value=1.4e-11  Score=101.02  Aligned_cols=161  Identities=20%  Similarity=0.231  Sum_probs=122.0

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      .....+++.|+|+.++|||.|++.|+++.+......+....+....+...+....+.+-|.+-. ....+...- ..+|+
T Consensus       421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv  498 (625)
T KOG1707|consen  421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV  498 (625)
T ss_pred             ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence            3446799999999999999999999999988877677777777777777788778888888764 222222222 77999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCcc-CCCHHHHHHHHHHcCCc-EEEEecCCCCCHHHH
Q 027856           89 ALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLR-AVSTEDATAFAERENTF-FMETSALESMNVENA  166 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~  166 (217)
                      ++++||.+++.+++.+...++.....  ...|+++|++|+|+.+.. +..... .++++.++++ .+.+|...... .++
T Consensus       499 ~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqp-de~~~~~~i~~P~~~S~~~~~s-~~l  574 (625)
T KOG1707|consen  499 ACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQP-DEFCRQLGLPPPIHISSKTLSS-NEL  574 (625)
T ss_pred             EEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCCh-HHHHHhcCCCCCeeeccCCCCC-chH
Confidence            99999999999998876655554443  489999999999996643 233333 7889999877 77777775333 788


Q ss_pred             HHHHHHHHH
Q 027856          167 FTEVLTQIY  175 (217)
Q Consensus       167 ~~~i~~~~~  175 (217)
                      |..|...+.
T Consensus       575 f~kL~~~A~  583 (625)
T KOG1707|consen  575 FIKLATMAQ  583 (625)
T ss_pred             HHHHHHhhh
Confidence            888876654

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.38  E-value=2e-11  Score=97.30  Aligned_cols=145  Identities=17%  Similarity=0.163  Sum_probs=90.0

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhC----cCC--------------CCCccc-ceeEeEE-----EEEE-ECCeEEEE
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRN----EFS--------------LESKST-IGVEFAT-----RSIR-CDDKIVKA   64 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~----~~~--------------~~~~~~-~~~~~~~-----~~~~-~~~~~~~~   64 (217)
                      ....+.|+|+|+.++|||||||+|.+.    ...              .....| ++++...     ..+. .++....+
T Consensus        14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~V   93 (492)
T TIGR02836        14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKV   93 (492)
T ss_pred             hCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccE
Confidence            345789999999999999999999998    322              111111 1222211     1222 24555789


Q ss_pred             EEEeCCChhh--------hhh---------------------hhhhhhc-CCcEEEEEE-ECC----ChhhHHHH-HHHH
Q 027856           65 QIWDTAGQER--------YRA---------------------ITSAYYR-GAVGALLVY-DVT----RHVTFENV-ERWL  108 (217)
Q Consensus        65 ~l~Dt~G~~~--------~~~---------------------~~~~~~~-~~d~ii~v~-d~~----~~~s~~~~-~~~~  108 (217)
                      .++||+|...        ...                     =+...+. ++++.++|. |.+    .++.+... +.++
T Consensus        94 rlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i  173 (492)
T TIGR02836        94 RLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVI  173 (492)
T ss_pred             EEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHH
Confidence            9999999211        111                     0223344 889988888 764    11222222 5677


Q ss_pred             HHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCC
Q 027856          109 KELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALE  159 (217)
Q Consensus       109 ~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  159 (217)
                      .++...   ++|+++++|+.|.....  ..+...++...++++++.+|+..
T Consensus       174 ~eLk~~---~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~  219 (492)
T TIGR02836       174 EELKEL---NKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVES  219 (492)
T ss_pred             HHHHhc---CCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHH
Confidence            887775   89999999999943211  34444566666788877777664

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>cd00066 G-alpha G protein alpha subunit

Probab=99.38  E-value=3.4e-11  Score=95.38  Aligned_cols=118  Identities=19%  Similarity=0.218  Sum_probs=83.3

Q ss_pred             EEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCCh----------hhHHHHHHHHHHHHh-hcCCCCcEEEEEeCCC
Q 027856           61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH----------VTFENVERWLKELRD-HTDSNIVIMLVGNKAD  129 (217)
Q Consensus        61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~l~~-~~~~~~p~ivv~nK~D  129 (217)
                      .+.+.+||++|+...+..|..++.+++++++|+|+++.          ..+.+....+..+.. ..-.+.|+++++||.|
T Consensus       160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D  239 (317)
T cd00066         160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD  239 (317)
T ss_pred             ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence            36889999999999999999999999999999999874          223333333333322 2225799999999999


Q ss_pred             CCCcc----------------CCCHHHHHHHHHH----------cCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 027856          130 LRHLR----------------AVSTEDATAFAER----------ENTFFMETSALESMNVENAFTEVLTQIYRVV  178 (217)
Q Consensus       130 ~~~~~----------------~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  178 (217)
                      +..++                .-..+.+..+...          ..+....++|.+-.++..+|+.+.+.+....
T Consensus       240 ~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~  314 (317)
T cd00066         240 LFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN  314 (317)
T ss_pred             HHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence            73211                2234455444332          1234677889999999999999988877654

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.37  E-value=2e-12  Score=96.97  Aligned_cols=171  Identities=17%  Similarity=0.199  Sum_probs=99.3

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcc-cceeEeEEEEEE------E------------------------
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKS-TIGVEFATRSIR------C------------------------   57 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~------~------------------------   57 (217)
                      -...+.-|+|+|..|+|||||++||.........++ .+..+.....++      +                        
T Consensus        15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~Ts   94 (366)
T KOG1532|consen   15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTS   94 (366)
T ss_pred             cccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhh
Confidence            345678899999999999999999987533221111 000111011100      0                        


Q ss_pred             -----------------CCeEEEEEEEeCCChhhh------hhh-hhhhh-cCCcEEEEEEECCC---hhhHHHHHHHHH
Q 027856           58 -----------------DDKIVKAQIWDTAGQERY------RAI-TSAYY-RGAVGALLVYDVTR---HVTFENVERWLK  109 (217)
Q Consensus        58 -----------------~~~~~~~~l~Dt~G~~~~------~~~-~~~~~-~~~d~ii~v~d~~~---~~s~~~~~~~~~  109 (217)
                                       ....++..++||||+.+.      .++ .+.+. ...-+++|++|...   +.+|  +.+.+.
T Consensus        95 LNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tF--MSNMlY  172 (366)
T KOG1532|consen   95 LNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTF--MSNMLY  172 (366)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhH--HHHHHH
Confidence                             011136889999996432      111 11111 23356788888654   3333  234444


Q ss_pred             HHHhhcCCCCcEEEEEeCCCCCCccC----CC----HHHHHH-------------HHH-----HcCCcEEEEecCCCCCH
Q 027856          110 ELRDHTDSNIVIMLVGNKADLRHLRA----VS----TEDATA-------------FAE-----RENTFFMETSALESMNV  163 (217)
Q Consensus       110 ~l~~~~~~~~p~ivv~nK~D~~~~~~----~~----~~~~~~-------------~~~-----~~~~~~~~~Sa~~~~~i  163 (217)
                      ..........|+|++.||.|+.+...    +.    .+++..             +..     ..++..+-+|+.+|.|+
T Consensus       173 AcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~  252 (366)
T KOG1532|consen  173 ACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGF  252 (366)
T ss_pred             HHHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcH
Confidence            44334445899999999999976321    00    111111             000     02456899999999999


Q ss_pred             HHHHHHHHHHHHHHHhhh
Q 027856          164 ENAFTEVLTQIYRVVSRK  181 (217)
Q Consensus       164 ~~~~~~i~~~~~~~~~~~  181 (217)
                      +++|..+...+-+....+
T Consensus       253 ddf~~av~~~vdEy~~~y  270 (366)
T KOG1532|consen  253 DDFFTAVDESVDEYEEEY  270 (366)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999988777665554

>cd01882 BMS1 Bms1

Probab=99.37  E-value=3e-11  Score=91.22  Aligned_cols=140  Identities=18%  Similarity=0.154  Sum_probs=84.1

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      ......|+++|.+|+|||||++.+.+...........+.    ..+ .......+.++||||.-  .. .....+.+|++
T Consensus        36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i-~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvV  107 (225)
T cd01882          36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITV-VTGKKRRLTFIECPNDI--NA-MIDIAKVADLV  107 (225)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEE-EecCCceEEEEeCCchH--HH-HHHHHHhcCEE
Confidence            455678999999999999999999875322111111121    111 11234578999999853  22 22345789999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcE-EEEEeCCCCCCccCC---CHHHHHH-HHHH--cCCcEEEEecCCCC
Q 027856           90 LLVYDVTRHVTFENVERWLKELRDHTDSNIVI-MLVGNKADLRHLRAV---STEDATA-FAER--ENTFFMETSALESM  161 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~-ivv~nK~D~~~~~~~---~~~~~~~-~~~~--~~~~~~~~Sa~~~~  161 (217)
                      ++++|++....... ..++..+...   +.|. ++|+||+|+.+....   ...++.+ +...  .+.+++.+||++.-
T Consensus       108 llviDa~~~~~~~~-~~i~~~l~~~---g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~  182 (225)
T cd01882         108 LLLIDASFGFEMET-FEFLNILQVH---GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG  182 (225)
T ss_pred             EEEEecCcCCCHHH-HHHHHHHHHc---CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence            99999986543322 2334444332   5674 459999998642211   0112222 2222  34679999999864

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.37  E-value=2.9e-12  Score=97.81  Aligned_cols=95  Identities=17%  Similarity=0.179  Sum_probs=77.3

Q ss_pred             hhhhhhhhhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCc
Q 027856           73 ERYRAITSAYYRGAVGALLVYDVTRHV-TFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTF  151 (217)
Q Consensus        73 ~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  151 (217)
                      +++..+...++.++|++++|+|+.++. +++.+..|+..+..   .++|+++|+||+|+.+...+..+.+..+ ...+..
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~   99 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ   99 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence            567777888999999999999999887 89999999987654   4799999999999975443333334433 457888


Q ss_pred             EEEEecCCCCCHHHHHHHHH
Q 027856          152 FMETSALESMNVENAFTEVL  171 (217)
Q Consensus       152 ~~~~Sa~~~~~i~~~~~~i~  171 (217)
                      ++++||++|.|++++|+.+.
T Consensus       100 v~~~SAktg~gi~eLf~~l~  119 (245)
T TIGR00157       100 VLMTSSKNQDGLKELIEALQ  119 (245)
T ss_pred             EEEEecCCchhHHHHHhhhc
Confidence            99999999999999998876

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.37  E-value=1.7e-11  Score=98.20  Aligned_cols=160  Identities=14%  Similarity=0.183  Sum_probs=109.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCC--------------CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhh
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSL--------------ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRA   77 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~   77 (217)
                      ..-+|+++-+-..|||||+..|+.+.-..              ......|++.-....-+..+.+.++++||||+..|..
T Consensus         4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG   83 (603)
T COG1217           4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG   83 (603)
T ss_pred             ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence            34689999999999999999999864211              1122345555555555556668999999999999998


Q ss_pred             hhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC-CHHHHHHHHH-------HcC
Q 027856           78 ITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV-STEDATAFAE-------REN  149 (217)
Q Consensus        78 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~-------~~~  149 (217)
                      -.+..+.-+|++++++|+.+..-.+. +-   .+......+.+.|+|+||+|....+.. -.++...+..       .++
T Consensus        84 EVERvl~MVDgvlLlVDA~EGpMPQT-rF---VlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLd  159 (603)
T COG1217          84 EVERVLSMVDGVLLLVDASEGPMPQT-RF---VLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLD  159 (603)
T ss_pred             hhhhhhhhcceEEEEEEcccCCCCch-hh---hHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCC
Confidence            88999999999999999987543221 11   122222236777899999998764311 1222222222       356


Q ss_pred             CcEEEEecCCCC----------CHHHHHHHHHHHHH
Q 027856          150 TFFMETSALESM----------NVENAFTEVLTQIY  175 (217)
Q Consensus       150 ~~~~~~Sa~~~~----------~i~~~~~~i~~~~~  175 (217)
                      +++++.|+..|.          ++.-+|+.|++++.
T Consensus       160 FPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp  195 (603)
T COG1217         160 FPIVYASARNGTASLDPEDEADDMAPLFETILDHVP  195 (603)
T ss_pred             CcEEEeeccCceeccCccccccchhHHHHHHHHhCC
Confidence            789999988764          46677777776654

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.37  E-value=4.7e-12  Score=94.53  Aligned_cols=151  Identities=16%  Similarity=0.134  Sum_probs=84.8

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCC------------CCcc----cceeEeEEEEEEECC-------------
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSL------------ESKS----TIGVEFATRSIRCDD-------------   59 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~------------~~~~----~~~~~~~~~~~~~~~-------------   59 (217)
                      +......|+++|+.|+|||||+++++......            ....    ..+..  ...+ .++             
T Consensus        18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~--~~~l-~~gcic~~~~~~~~~~   94 (207)
T TIGR00073        18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAP--AIQI-NTGKECHLDAHMVAHA   94 (207)
T ss_pred             hhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCc--EEEE-cCCCcccCChHHHHHH
Confidence            44568899999999999999999988641110            0000    00000  0000 011             


Q ss_pred             ------eEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCc
Q 027856           60 ------KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL  133 (217)
Q Consensus        60 ------~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~  133 (217)
                            ....+.+++|.|.-...   ..+....+..+.|+|+.+.....  .... ..     ...|.++++||+|+.+.
T Consensus        95 l~~~~~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~--~~~~-~~-----~~~a~iiv~NK~Dl~~~  163 (207)
T TIGR00073        95 LEDLPLDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKP--LKYP-GM-----FKEADLIVINKADLAEA  163 (207)
T ss_pred             HHHhccCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchh--hhhH-hH-----HhhCCEEEEEHHHcccc
Confidence                  01355666666621000   01112234445666665443211  1111 11     14567999999999753


Q ss_pred             cCCCHHHHHHHHHHc--CCcEEEEecCCCCCHHHHHHHHHHH
Q 027856          134 RAVSTEDATAFAERE--NTFFMETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus       134 ~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~  173 (217)
                      .....++..+..+..  ..+++++||++|.|++++|+++.++
T Consensus       164 ~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       164 VGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             chhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            322334444444443  3789999999999999999999874

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.37  E-value=7.1e-12  Score=99.70  Aligned_cols=163  Identities=12%  Similarity=0.147  Sum_probs=81.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCC-CCccc--ceeEeEEEEEEECCeEEEEEEEeCCChhhhh-----hhhhhhh
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKST--IGVEFATRSIRCDDKIVKAQIWDTAGQERYR-----AITSAYY   83 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----~~~~~~~   83 (217)
                      ..++|+|+|.+|+|||||||+|.|-.-.. ...++  ..++.....+.... .-.+.+||.||.-...     .+...-+
T Consensus        34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~-~pnv~lWDlPG~gt~~f~~~~Yl~~~~~  112 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPK-FPNVTLWDLPGIGTPNFPPEEYLKEVKF  112 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCC-CCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence            46899999999999999999997743221 11111  11112222222221 1268999999942211     1222345


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC--C-----ccCCC----HHHHHHHHHH----c
Q 027856           84 RGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR--H-----LRAVS----TEDATAFAER----E  148 (217)
Q Consensus        84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~--~-----~~~~~----~~~~~~~~~~----~  148 (217)
                      ...|.+|++.+-  +-+-.++ .+...+...   ++|+.+|-||+|..  +     .+...    .+++++.+..    .
T Consensus       113 ~~yD~fiii~s~--rf~~ndv-~La~~i~~~---gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~  186 (376)
T PF05049_consen  113 YRYDFFIIISSE--RFTENDV-QLAKEIQRM---GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA  186 (376)
T ss_dssp             GG-SEEEEEESS--S--HHHH-HHHHHHHHT---T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred             cccCEEEEEeCC--CCchhhH-HHHHHHHHc---CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence            677988887553  3222222 233344433   89999999999961  1     11122    2233333332    2


Q ss_pred             C---CcEEEEecCCC--CCHHHHHHHHHHHHHHHHhhh
Q 027856          149 N---TFFMETSALES--MNVENAFTEVLTQIYRVVSRK  181 (217)
Q Consensus       149 ~---~~~~~~Sa~~~--~~i~~~~~~i~~~~~~~~~~~  181 (217)
                      +   ..+|.+|+.+-  .++..+.+.+.+.+...+...
T Consensus       187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~~  224 (376)
T PF05049_consen  187 GVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRHA  224 (376)
T ss_dssp             T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHHH
T ss_pred             CCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHHH
Confidence            3   34899998874  457888888888777665544

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>cd01900 YchF YchF subfamily

Probab=99.35  E-value=1.5e-11  Score=94.79  Aligned_cols=81  Identities=17%  Similarity=0.140  Sum_probs=57.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeE---------------EEEEEEeCCChhh------
Q 027856           16 VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKI---------------VKAQIWDTAGQER------   74 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~------   74 (217)
                      |+++|.|++|||||+|+|++........+..+.+.....+.+.+..               ..+.++|+||...      
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            5899999999999999999988754444555556656566554432               3589999999322      


Q ss_pred             -hhhhhhhhhcCCcEEEEEEECC
Q 027856           75 -YRAITSAYYRGAVGALLVYDVT   96 (217)
Q Consensus        75 -~~~~~~~~~~~~d~ii~v~d~~   96 (217)
                       ........++.+|++++|+|+.
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence             1112233467899999999874

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.35  E-value=1.8e-11  Score=83.58  Aligned_cols=114  Identities=33%  Similarity=0.377  Sum_probs=82.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCc-ccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      ++|+++|..|+|||+|+.++....+...+. ++.+                           +......+.+.++.++.|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            589999999999999999998777754443 3332                           222334466788999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHH
Q 027856           93 YDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVE  164 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  164 (217)
                      ++..+..+++.+  |...+......+.|.++++||.|+.+...+..++.        ..++++|++++.|+.
T Consensus        54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~~~~~~~  115 (124)
T smart00010       54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSAKTPEEGE  115 (124)
T ss_pred             EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhCCCcchhh
Confidence            999999988755  77777665556788999999999854333332222        235577888988874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.35  E-value=5.5e-11  Score=88.27  Aligned_cols=155  Identities=25%  Similarity=0.219  Sum_probs=111.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhh-------hhhhhhhc
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYR-------AITSAYYR   84 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~   84 (217)
                      ..-+|+++|.|.+|||||+..++..+-........+.+..+..+.+++  ..+++.|.||..+-.       ...-+..+
T Consensus        61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavAr  138 (364)
T KOG1486|consen   61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVAR  138 (364)
T ss_pred             CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEee
Confidence            367999999999999999999998776554446667778888888888  478999999943322       22334567


Q ss_pred             CCcEEEEEEECCChhhHH-HHHHHHHHHHhhcC-----------------------------------------------
Q 027856           85 GAVGALLVYDVTRHVTFE-NVERWLKELRDHTD-----------------------------------------------  116 (217)
Q Consensus        85 ~~d~ii~v~d~~~~~s~~-~~~~~~~~l~~~~~-----------------------------------------------  116 (217)
                      .+|.++.|.|++..+.-. .++.-++.+.....                                               
T Consensus       139 taDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl  218 (364)
T KOG1486|consen  139 TADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVL  218 (364)
T ss_pred             cccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEE
Confidence            899999999998755332 23333333321111                                               


Q ss_pred             ------------------CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027856          117 ------------------SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       117 ------------------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  175 (217)
                                        ...+++.|-||+|     .++.++...+++..+  -+.+|+.-..|++.+++.|.+++.
T Consensus       219 ~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID-----~vs~eevdrlAr~Pn--svViSC~m~lnld~lle~iWe~l~  288 (364)
T KOG1486|consen  219 FREDCTVDDFIDVIEGNRVYIKCLYVYNKID-----QVSIEEVDRLARQPN--SVVISCNMKLNLDRLLERIWEELN  288 (364)
T ss_pred             EecCCChHHHHHHHhccceEEEEEEEeeccc-----eecHHHHHHHhcCCC--cEEEEeccccCHHHHHHHHHHHhc
Confidence                              1356788888888     566888888888766  556677777889999999998765

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.34  E-value=1.9e-11  Score=96.49  Aligned_cols=103  Identities=16%  Similarity=0.095  Sum_probs=66.0

Q ss_pred             EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC--CHH
Q 027856           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV--STE  139 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~~  139 (217)
                      +.+.|+||+|...-.   ......+|.++++.+......+....   ..+.+     ..-++|+||+|+......  ...
T Consensus       149 ~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E-----~aDIiVVNKaDl~~~~~a~~~~~  217 (332)
T PRK09435        149 YDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIK---KGIME-----LADLIVINKADGDNKTAARRAAA  217 (332)
T ss_pred             CCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHH---hhhhh-----hhheEEeehhcccchhHHHHHHH
Confidence            688999999954222   22466799999997755554443322   21111     123799999998653211  112


Q ss_pred             HHHHHHHH-------cCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027856          140 DATAFAER-------ENTFFMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       140 ~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  175 (217)
                      +.......       +..+++.+||.++.|++++++.|.+++.
T Consensus       218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            22222221       2357999999999999999999998765

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.34  E-value=5.2e-11  Score=92.45  Aligned_cols=141  Identities=18%  Similarity=0.261  Sum_probs=75.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCC----------cccceeEeEEEEEEECCeEEEEEEEeCCChh--------
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLES----------KSTIGVEFATRSIRCDDKIVKAQIWDTAGQE--------   73 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------   73 (217)
                      ..++|+|+|.+|+|||||||.|++.......          ..+..+......+.-++..+.+.++||||.-        
T Consensus         3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~   82 (281)
T PF00735_consen    3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC   82 (281)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence            3689999999999999999999997653331          1233344444445557888999999999910        


Q ss_pred             ----------hhhhhh---------hhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCc
Q 027856           74 ----------RYRAIT---------SAYYRGAVGALLVYDVTRHV-TFENVERWLKELRDHTDSNIVIMLVGNKADLRHL  133 (217)
Q Consensus        74 ----------~~~~~~---------~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~  133 (217)
                                .+....         ...=..+|+++|+++++... ...++ ..+..|.    ..+++|.|+.|.|....
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di-~~mk~Ls----~~vNvIPvIaKaD~lt~  157 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI-EFMKRLS----KRVNVIPVIAKADTLTP  157 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH-HHHHHHT----TTSEEEEEESTGGGS-H
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH-HHHHHhc----ccccEEeEEecccccCH
Confidence                      011000         01113668999999986532 21222 2344443    36789999999997542


Q ss_pred             cCCC--HHHHHHHHHHcCCcEEEEec
Q 027856          134 RAVS--TEDATAFAERENTFFMETSA  157 (217)
Q Consensus       134 ~~~~--~~~~~~~~~~~~~~~~~~Sa  157 (217)
                      .+..  ...+.+....+++.++....
T Consensus       158 ~el~~~k~~i~~~l~~~~I~~f~f~~  183 (281)
T PF00735_consen  158 EELQAFKQRIREDLEENNIKIFDFPE  183 (281)
T ss_dssp             HHHHHHHHHHHHHHHHTT--S-----
T ss_pred             HHHHHHHHHHHHHHHHcCceeecccc
Confidence            2211  12223334456766655443

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.34  E-value=3.3e-11  Score=98.79  Aligned_cols=155  Identities=20%  Similarity=0.192  Sum_probs=106.1

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhC--------------------cCCCCCc---------ccceeEeEEEEEEECCe
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRN--------------------EFSLESK---------STIGVEFATRSIRCDDK   60 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~--------------------~~~~~~~---------~~~~~~~~~~~~~~~~~   60 (217)
                      ....++.+++|+..+|||||+.+++..                    ..+..|.         ...|.+......+++-.
T Consensus       174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~  253 (603)
T KOG0458|consen  174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK  253 (603)
T ss_pred             CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence            346799999999999999999998752                    1112221         23455566666667777


Q ss_pred             EEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChh---hHHHHH--HHHHHHHhhcCCCCcEEEEEeCCCCCCccC
Q 027856           61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV---TFENVE--RWLKELRDHTDSNIVIMLVGNKADLRHLRA  135 (217)
Q Consensus        61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~--~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~  135 (217)
                      ...++|+|+||+..|......-..++|+.++|+|++...   .|+...  +-...+.+..+ -..++|++||+|+.+..+
T Consensus       254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg-i~qlivaiNKmD~V~Wsq  332 (603)
T KOG0458|consen  254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG-ISQLIVAINKMDLVSWSQ  332 (603)
T ss_pred             ceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC-cceEEEEeecccccCccH
Confidence            789999999999999888888889999999999998532   121110  11112222222 445789999999987665


Q ss_pred             CCHHHHHH----HH-HHc-----CCcEEEEecCCCCCHHH
Q 027856          136 VSTEDATA----FA-ERE-----NTFFMETSALESMNVEN  165 (217)
Q Consensus       136 ~~~~~~~~----~~-~~~-----~~~~~~~Sa~~~~~i~~  165 (217)
                      -..+++..    |. +..     .+.|+++|+..|+|+-.
T Consensus       333 ~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k  372 (603)
T KOG0458|consen  333 DRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK  372 (603)
T ss_pred             HHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence            55555533    33 222     34699999999999644

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.34  E-value=1.2e-10  Score=90.12  Aligned_cols=166  Identities=16%  Similarity=0.141  Sum_probs=101.5

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcC----C---CCCcccceeEeEEEEEEE-------CCeEEEEEEEeCCChhhhh
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEF----S---LESKSTIGVEFATRSIRC-------DDKIVKAQIWDTAGQERYR   76 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~----~---~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~Dt~G~~~~~   76 (217)
                      ...++++++|+-.+|||||.++|..-.-    +   .+.....+.+.--..+.+       .++..++.++|+||+...-
T Consensus         5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI   84 (522)
T KOG0461|consen    5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI   84 (522)
T ss_pred             CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence            3459999999999999999999886322    1   111112222222222222       3555789999999987665


Q ss_pred             hhhhhhhcCCcEEEEEEECCChhhHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCCCcc--CCCHHHHH-HHHHH-----
Q 027856           77 AITSAYYRGAVGALLVYDVTRHVTFENVER-WLKELRDHTDSNIVIMLVGNKADLRHLR--AVSTEDAT-AFAER-----  147 (217)
Q Consensus        77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~-~~~~~-----  147 (217)
                      ........-.|..++|+|+......+..+- .+.++..     ...++|+||+|...+.  ....++.. .+.+.     
T Consensus        85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c-----~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~  159 (522)
T KOG0461|consen   85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLC-----KKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTG  159 (522)
T ss_pred             HHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhc-----cceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcC
Confidence            555555566799999999987654444433 3333332     3357888888875432  12222221 11111     


Q ss_pred             --cCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhh
Q 027856          148 --ENTFFMETSALESMNVENAFTEVLTQIYRVVSRK  181 (217)
Q Consensus       148 --~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~  181 (217)
                        -+.+++++||.+|.--.+.+..+.+.+..+..+.
T Consensus       160 f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P  195 (522)
T KOG0461|consen  160 FDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEP  195 (522)
T ss_pred             cCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCC
Confidence              2378999999999666666666666665555444

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.32  E-value=1.7e-11  Score=102.83  Aligned_cols=166  Identities=17%  Similarity=0.205  Sum_probs=110.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEEC------------C----eEEEEEEEeCCChhhh
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCD------------D----KIVKAQIWDTAGQERY   75 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~----~~~~~~l~Dt~G~~~~   75 (217)
                      ..+=+||+|+-.+|||-|+..+-+.++...-...++-..-..++...            +    .---+.++||||++.|
T Consensus       474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF  553 (1064)
T KOG1144|consen  474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF  553 (1064)
T ss_pred             CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence            35668999999999999999999876654332332222222222221            1    1125689999999999


Q ss_pred             hhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCc-----c-CC----------CHH
Q 027856           76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL-----R-AV----------STE  139 (217)
Q Consensus        76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~-----~-~~----------~~~  139 (217)
                      ..+.......||.+|+|+|+...-..+.++ -++.|+.   .+.|+||++||+|....     + .+          ...
T Consensus       554 tnlRsrgsslC~~aIlvvdImhGlepqtiE-Si~lLR~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~  629 (1064)
T KOG1144|consen  554 TNLRSRGSSLCDLAILVVDIMHGLEPQTIE-SINLLRM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQN  629 (1064)
T ss_pred             hhhhhccccccceEEEEeehhccCCcchhH-HHHHHHh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHH
Confidence            999999999999999999998653222221 2233333   48999999999997421     0 00          000


Q ss_pred             H--------HHHHHHH-c-------------CCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhh
Q 027856          140 D--------ATAFAER-E-------------NTFFMETSALESMNVENAFTEVLTQIYRVVSRK  181 (217)
Q Consensus       140 ~--------~~~~~~~-~-------------~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~  181 (217)
                      +        +.+|+.. +             -+.++++||.+|+|+.+++.+|++..+....++
T Consensus       630 EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~k  693 (1064)
T KOG1144|consen  630 EFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEK  693 (1064)
T ss_pred             HHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHH
Confidence            0        1122211 1             123788999999999999999999888877765

>smart00053 DYNc Dynamin, GTPase

Probab=99.31  E-value=4.8e-11  Score=90.22  Aligned_cols=119  Identities=16%  Similarity=0.226  Sum_probs=71.5

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCccccee-----------EeEEEEEEECC--------------------
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGV-----------EFATRSIRCDD--------------------   59 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-----------~~~~~~~~~~~--------------------   59 (217)
                      ...++|+|+|+.|+||||+++++.+..+.+......+.           ......+.+.+                    
T Consensus        24 i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~  103 (240)
T smart00053       24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV  103 (240)
T ss_pred             CCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence            34568999999999999999999997632211110000           00000010110                    


Q ss_pred             -------------------eEEEEEEEeCCChhh-------------hhhhhhhhhcC-CcEEEEEEECCChhhHHHHHH
Q 027856           60 -------------------KIVKAQIWDTAGQER-------------YRAITSAYYRG-AVGALLVYDVTRHVTFENVER  106 (217)
Q Consensus        60 -------------------~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~-~d~ii~v~d~~~~~s~~~~~~  106 (217)
                                         ....++++||||...             ...+...++.+ .+++++|+|+....+-.+...
T Consensus       104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~  183 (240)
T smart00053      104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK  183 (240)
T ss_pred             cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH
Confidence                               013789999999531             22345566674 468999999865433222223


Q ss_pred             HHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856          107 WLKELRDHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus       107 ~~~~l~~~~~~~~p~ivv~nK~D~~~  132 (217)
                      +...+..   .+.++++|+||.|..+
T Consensus       184 ia~~ld~---~~~rti~ViTK~D~~~  206 (240)
T smart00053      184 LAKEVDP---QGERTIGVITKLDLMD  206 (240)
T ss_pred             HHHHHHH---cCCcEEEEEECCCCCC
Confidence            3333333   3789999999999865

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>smart00275 G_alpha G protein alpha subunit

Probab=99.31  E-value=1.7e-10  Score=92.13  Aligned_cols=117  Identities=17%  Similarity=0.202  Sum_probs=82.4

Q ss_pred             EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChh----------hHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCC
Q 027856           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV----------TFENVERWLKELRD-HTDSNIVIMLVGNKADL  130 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~----------s~~~~~~~~~~l~~-~~~~~~p~ivv~nK~D~  130 (217)
                      +.+.+||.+|+...+..|..++.++++++||+|+++..          -+.+....+..+.. ..-.+.|+++++||.|+
T Consensus       184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~  263 (342)
T smart00275      184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL  263 (342)
T ss_pred             eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence            57899999999999999999999999999999999732          23333333333332 22257999999999998


Q ss_pred             CCcc---------------CCCHHHHHHHHHH-----c------CCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 027856          131 RHLR---------------AVSTEDATAFAER-----E------NTFFMETSALESMNVENAFTEVLTQIYRVV  178 (217)
Q Consensus       131 ~~~~---------------~~~~~~~~~~~~~-----~------~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  178 (217)
                      ..++               ..+.+.+..+...     .      .+..+.++|.+-.++..+|+.+.+.+.+..
T Consensus       264 ~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~  337 (342)
T smart00275      264 FEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN  337 (342)
T ss_pred             HHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence            4311               1234444444322     1      234677889999999999999888777654

Subunit of G proteins that contains the guanine nucleotide binding site

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.30  E-value=1.3e-10  Score=97.59  Aligned_cols=123  Identities=16%  Similarity=0.141  Sum_probs=77.5

Q ss_pred             CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcc-cceeEeEEEEEEECCeEEEEEEEeCCChhhh----------h
Q 027856            8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKS-TIGVEFATRSIRCDDKIVKAQIWDTAGQERY----------R   76 (217)
Q Consensus         8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~   76 (217)
                      .+.+..++|+|+|.+|+||||++|++++......... ..+..........++  ..+.++||||....          .
T Consensus       113 ~~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeIL  190 (763)
T TIGR00993       113 DPLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKIL  190 (763)
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHH
Confidence            3456678999999999999999999999865433221 122222222233344  57899999994321          1


Q ss_pred             hhhhhhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCC--CcEEEEEeCCCCCC
Q 027856           77 AITSAYYR--GAVGALLVYDVTRHVTFENVERWLKELRDHTDSN--IVIMLVGNKADLRH  132 (217)
Q Consensus        77 ~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~p~ivv~nK~D~~~  132 (217)
                      .....++.  .+|++|+|..++.......-..++..+...++.+  ..+|||+|..|...
T Consensus       191 k~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       191 SSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence            11122333  5899999988764332212235666666666543  45789999999865

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.29  E-value=8.8e-12  Score=95.57  Aligned_cols=161  Identities=19%  Similarity=0.126  Sum_probs=108.1

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh---------hhhhhhh
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ---------ERYRAIT   79 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~---------~~~~~~~   79 (217)
                      ......-|+|||.+|+||||||++|++....+...-..+.+......+.... ..+.+.||.|.         ..|.+..
T Consensus       174 ~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg-~~vlltDTvGFisdLP~~LvaAF~ATL  252 (410)
T KOG0410|consen  174 EGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG-NFVLLTDTVGFISDLPIQLVAAFQATL  252 (410)
T ss_pred             ccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC-cEEEEeechhhhhhCcHHHHHHHHHHH
Confidence            3455678999999999999999999987766655555555555555444332 37789999993         2333333


Q ss_pred             hhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc----EEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEE
Q 027856           80 SAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV----IMLVGNKADLRHLRAVSTEDATAFAERENTFFMET  155 (217)
Q Consensus        80 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p----~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (217)
                       .-...+|.++.|.|+++|..-+..+..+..+.+..-+..|    ++=|-||+|..... .       -...++  .+.+
T Consensus       253 -eeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~-~-------e~E~n~--~v~i  321 (410)
T KOG0410|consen  253 -EEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDE-V-------EEEKNL--DVGI  321 (410)
T ss_pred             -HHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccccc-C-------ccccCC--cccc
Confidence             3346799999999999998655555566666655333334    34466777764421 1       111222  6789


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHHhhh
Q 027856          156 SALESMNVENAFTEVLTQIYRVVSRK  181 (217)
Q Consensus       156 Sa~~~~~i~~~~~~i~~~~~~~~~~~  181 (217)
                      |+++|.|.+++.+.+-..+.....-.
T Consensus       322 saltgdgl~el~~a~~~kv~~~t~~~  347 (410)
T KOG0410|consen  322 SALTGDGLEELLKAEETKVASETTVD  347 (410)
T ss_pred             ccccCccHHHHHHHHHHHhhhhheee
Confidence            99999999999888877766554433

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.27  E-value=6.9e-11  Score=93.03  Aligned_cols=104  Identities=17%  Similarity=0.041  Sum_probs=64.9

Q ss_pred             EEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCH--
Q 027856           61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVST--  138 (217)
Q Consensus        61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~--  138 (217)
                      .+.+.|+||+|.-   .........+|.++++....   +.+++..+...+.     ++|.++|+||+|+........  
T Consensus       126 g~D~viidT~G~~---~~e~~i~~~aD~i~vv~~~~---~~~el~~~~~~l~-----~~~~ivv~NK~Dl~~~~~~~~~~  194 (300)
T TIGR00750       126 GYDVIIVETVGVG---QSEVDIANMADTFVVVTIPG---TGDDLQGIKAGLM-----EIADIYVVNKADGEGATNVTIAR  194 (300)
T ss_pred             CCCEEEEeCCCCc---hhhhHHHHhhceEEEEecCC---ccHHHHHHHHHHh-----hhccEEEEEcccccchhHHHHHH
Confidence            3688999999943   12223566788888885433   3334444333332     567799999999865321110  


Q ss_pred             HH----HHHHHH---HcCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027856          139 ED----ATAFAE---RENTFFMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       139 ~~----~~~~~~---~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  175 (217)
                      ..    ...+..   .+..+++++||+++.|++++++++.+.+.
T Consensus       195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence            00    011111   12346999999999999999999998744

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=3.1e-10  Score=89.31  Aligned_cols=85  Identities=18%  Similarity=0.140  Sum_probs=62.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCe----------------EEEEEEEeCCChh---
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK----------------IVKAQIWDTAGQE---   73 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~l~Dt~G~~---   73 (217)
                      .+++++||.||+|||||.|+++.........|..+++.....+.+.+.                ...+.|+|.+|..   
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            478999999999999999999998865444466666666665544211                2578999999932   


Q ss_pred             ----hhhhhhhhhhcCCcEEEEEEECCC
Q 027856           74 ----RYRAITSAYYRGAVGALLVYDVTR   97 (217)
Q Consensus        74 ----~~~~~~~~~~~~~d~ii~v~d~~~   97 (217)
                          .+......-++.+|+++.|+++..
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f~  109 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCFG  109 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence                223333445689999999999873

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.23  E-value=5.6e-11  Score=87.10  Aligned_cols=147  Identities=20%  Similarity=0.244  Sum_probs=94.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCC-CCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhh-----hhhhhhcCC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRA-----ITSAYYRGA   86 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----~~~~~~~~~   86 (217)
                      .-||+++|.+|+|||++=..+..+... ....++.+++.....+.+-|. ..+.+||+.|++.+-.     .....+.++
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~nV   82 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFRNV   82 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhhheeh
Confidence            358999999999999986655543321 122244455666666655554 5889999999885432     345678899


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCCccC--CCHHHHHHH----HHHcCCcEEEEecC
Q 027856           87 VGALLVYDVTRHVTFENVERWLKELRDHT--DSNIVIMLVGNKADLRHLRA--VSTEDATAF----AERENTFFMETSAL  158 (217)
Q Consensus        87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~----~~~~~~~~~~~Sa~  158 (217)
                      +++++|+|++..+-..+++.+...+....  .+...+++..+|.|+.....  ....+..+.    ....++.++++|..
T Consensus        83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsiw  162 (295)
T KOG3886|consen   83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSIW  162 (295)
T ss_pred             eeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccchh
Confidence            99999999998775555555554433332  25667888899999975432  222222222    22344568888877


Q ss_pred             CC
Q 027856          159 ES  160 (217)
Q Consensus       159 ~~  160 (217)
                      +.
T Consensus       163 De  164 (295)
T KOG3886|consen  163 DE  164 (295)
T ss_pred             hH
Confidence            54

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.23  E-value=1.4e-10  Score=83.24  Aligned_cols=53  Identities=19%  Similarity=0.089  Sum_probs=44.4

Q ss_pred             EEEEeCCCCCCccCCCHHHHHHHHHHc--CCcEEEEecCCCCCHHHHHHHHHHHH
Q 027856          122 MLVGNKADLRHLRAVSTEDATAFAERE--NTFFMETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       122 ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~  174 (217)
                      ++|+||.|+...-..+.+...+-+++.  +.+++++|+++|+|+++++.|+...+
T Consensus       146 llVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         146 LLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             EEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            789999999886677777777777664  57899999999999999999987653

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.21  E-value=1.8e-10  Score=91.98  Aligned_cols=155  Identities=19%  Similarity=0.093  Sum_probs=107.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCC---CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSL---ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      -|+..|+-..|||||+..+.+.....   .....++++.  .....+.....+.|+|.||++++-+.....+..+|..++
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDl--g~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alL   79 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDL--GFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALL   79 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEee--eeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence            57889999999999999999875432   3333444444  444344444589999999999999888888889999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHH---HcCCcEEEEecCCCCCHHHHHH
Q 027856           92 VYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAE---RENTFFMETSALESMNVENAFT  168 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~~~~  168 (217)
                      |+++++.-..+..+.+ ..+. .. .....++|+||+|..++..+ .+...+...   ....++|.+|+.+|.|++++-+
T Consensus        80 vV~~deGl~~qtgEhL-~iLd-ll-gi~~giivltk~D~~d~~r~-e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~  155 (447)
T COG3276          80 VVAADEGLMAQTGEHL-LILD-LL-GIKNGIIVLTKADRVDEARI-EQKIKQILADLSLANAKIFKTSAKTGRGIEELKN  155 (447)
T ss_pred             EEeCccCcchhhHHHH-HHHH-hc-CCCceEEEEeccccccHHHH-HHHHHHHHhhcccccccccccccccCCCHHHHHH
Confidence            9999765444433321 1111 11 13345899999998763211 111222222   2346689999999999999999


Q ss_pred             HHHHHHH
Q 027856          169 EVLTQIY  175 (217)
Q Consensus       169 ~i~~~~~  175 (217)
                      .|.....
T Consensus       156 ~l~~L~~  162 (447)
T COG3276         156 ELIDLLE  162 (447)
T ss_pred             HHHHhhh
Confidence            9998773

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.21  E-value=3.8e-10  Score=96.86  Aligned_cols=118  Identities=19%  Similarity=0.193  Sum_probs=87.5

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcC--CC----------------CCcccceeEeEEEEEEECCeEEEEEEEeCCC
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEF--SL----------------ESKSTIGVEFATRSIRCDDKIVKAQIWDTAG   71 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   71 (217)
                      .+...+|+++|+..+|||||..+++-..-  ..                +....+++......+.+.+ .+.++++||||
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPG   85 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPG   85 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCC
Confidence            56788999999999999999999885311  00                0011233444444444443 57999999999


Q ss_pred             hhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856           72 QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        72 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  132 (217)
                      +..|..-....++-+|++++|+|+...-..+.-.-|+.....    ++|.++++||+|...
T Consensus        86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~----~vp~i~fiNKmDR~~  142 (697)
T COG0480          86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY----GVPRILFVNKMDRLG  142 (697)
T ss_pred             ccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhc----CCCeEEEEECccccc
Confidence            999999999999999999999999887655544445555443    899999999999754

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.17  E-value=1e-09  Score=85.95  Aligned_cols=117  Identities=19%  Similarity=0.282  Sum_probs=76.0

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCC----------CcccceeEeEEEEEEECCeEEEEEEEeCCChhh------
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLE----------SKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER------   74 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------   74 (217)
                      -..++|+++|+.|+|||||+|.|++......          ..++..+......+.-++..+.++++||||.-.      
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~  100 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK  100 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence            4579999999999999999999999744322          224444555555566678889999999999100      


Q ss_pred             --------hhhhhhhhh--------------cCCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027856           75 --------YRAITSAYY--------------RGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        75 --------~~~~~~~~~--------------~~~d~ii~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~  131 (217)
                              .......++              ..+|+++|.+..+... +..+ -..+..+..    .+.+|.|+.|.|..
T Consensus       101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~-l~~~DIe~Mk~ls~----~vNlIPVI~KaD~l  175 (373)
T COG5019         101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHG-LKPLDIEAMKRLSK----RVNLIPVIAKADTL  175 (373)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCC-CCHHHHHHHHHHhc----ccCeeeeeeccccC
Confidence                    011111111              3578999998865432 1111 123333433    56788999999975


Q ss_pred             C
Q 027856          132 H  132 (217)
Q Consensus       132 ~  132 (217)
                      .
T Consensus       176 T  176 (373)
T COG5019         176 T  176 (373)
T ss_pred             C
Confidence            4

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.14  E-value=5.5e-10  Score=82.46  Aligned_cols=154  Identities=19%  Similarity=0.246  Sum_probs=88.7

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCC---------CCcccceeEeEEEEEEECCeEEEEEEEeCCCh---------
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSL---------ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ---------   72 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~---------   72 (217)
                      -..++|+|||.+|.|||||+|+++..+...         .+..|..+......+.-++...+++++||||.         
T Consensus        44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~nc  123 (336)
T KOG1547|consen   44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNC  123 (336)
T ss_pred             cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccch
Confidence            467999999999999999999998865432         11223333333344444777789999999991         


Q ss_pred             ---------h--------hhhhhhhhhhc--CCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856           73 ---------E--------RYRAITSAYYR--GAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        73 ---------~--------~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~  132 (217)
                               +        +........+.  .+++++|.+..+... +.-+ -.++..+.+    -..++.|+-|.|...
T Consensus       124 WePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhs-LrplDieflkrLt~----vvNvvPVIakaDtlT  198 (336)
T KOG1547|consen  124 WEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHS-LRPLDIEFLKRLTE----VVNVVPVIAKADTLT  198 (336)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCc-cCcccHHHHHHHhh----hheeeeeEeeccccc
Confidence                     1        11111222222  456777777765432 2222 234444433    345788889999643


Q ss_pred             c--cCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 027856          133 L--RAVSTEDATAFAERENTFFMETSALESMNVENAFTE  169 (217)
Q Consensus       133 ~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  169 (217)
                      -  +..-.+.+.+-...+++.+++--+.+...-+..++.
T Consensus       199 leEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~  237 (336)
T KOG1547|consen  199 LEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLND  237 (336)
T ss_pred             HHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHH
Confidence            1  112223334445557788777666654433333333

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.14  E-value=3.4e-09  Score=83.58  Aligned_cols=129  Identities=18%  Similarity=0.221  Sum_probs=88.7

Q ss_pred             eEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhh-------HHHHHHHHHHHHhhc----CCC
Q 027856           50 FATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVT-------FENVERWLKELRDHT----DSN  118 (217)
Q Consensus        50 ~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s-------~~~~~~~~~~l~~~~----~~~  118 (217)
                      .....+.+.+  ..+.++|.+|+...+..|..++.+++++|||+++++...       .+.+..-+..+...+    -.+
T Consensus       185 I~e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~  262 (354)
T KOG0082|consen  185 IVEVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFAN  262 (354)
T ss_pred             eeEEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCccccc
Confidence            3344444444  688999999999999999999999999999999987432       222333222222222    257


Q ss_pred             CcEEEEEeCCCCCCcc---------------CCCHHHHHHHHHH----------cCCcEEEEecCCCCCHHHHHHHHHHH
Q 027856          119 IVIMLVGNKADLRHLR---------------AVSTEDATAFAER----------ENTFFMETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus       119 ~p~ivv~nK~D~~~~~---------------~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~i~~~  173 (217)
                      .++|+++||.|+-+++               .-..+++..+...          ..+.+..+.|.+-.+++.+|..+.+.
T Consensus       263 tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~  342 (354)
T KOG0082|consen  263 TSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDT  342 (354)
T ss_pred             CcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHH
Confidence            8999999999984321               1234455444332          12446677899999999999999988


Q ss_pred             HHHHHhh
Q 027856          174 IYRVVSR  180 (217)
Q Consensus       174 ~~~~~~~  180 (217)
                      +.....+
T Consensus       343 Ii~~nlk  349 (354)
T KOG0082|consen  343 IIQNNLK  349 (354)
T ss_pred             HHHHHHH
Confidence            8766543

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.13  E-value=1.2e-10  Score=87.62  Aligned_cols=154  Identities=20%  Similarity=0.157  Sum_probs=89.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcC-----------CCCCccc---------------ceeEeEEEEEEECCe-----
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEF-----------SLESKST---------------IGVEFATRSIRCDDK-----   60 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~-----------~~~~~~~---------------~~~~~~~~~~~~~~~-----   60 (217)
                      ..+.|++.|+||+|||||+++|...-.           +++.+.+               .....+...+...+.     
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls  107 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS  107 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence            467999999999999999998775311           1111110               011122222222211     


Q ss_pred             -------------EEEEEEEeCCC--hhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEE
Q 027856           61 -------------IVKAQIWDTAG--QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVG  125 (217)
Q Consensus        61 -------------~~~~~l~Dt~G--~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~  125 (217)
                                   .+.+.|++|.|  +.+..     ...-+|.+++|.-..-.+..+.++.-+-++..        ++|+
T Consensus       108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~-----I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD--------i~vV  174 (266)
T PF03308_consen  108 RATRDAVRLLDAAGFDVIIIETVGVGQSEVD-----IADMADTVVLVLVPGLGDEIQAIKAGIMEIAD--------IFVV  174 (266)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEEESSSTHHHH-----HHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S--------EEEE
T ss_pred             HhHHHHHHHHHHcCCCEEEEeCCCCCccHHH-----HHHhcCeEEEEecCCCccHHHHHhhhhhhhcc--------EEEE
Confidence                         15888899987  33332     45668999999998877666555544444432        7999


Q ss_pred             eCCCCCCccCCCHHHHHHHHHH-------cCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 027856          126 NKADLRHLRAVSTEDATAFAER-------ENTFFMETSALESMNVENAFTEVLTQIYRVVS  179 (217)
Q Consensus       126 nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  179 (217)
                      ||.|....+ ....+.+.....       +..+++.+||.++.|++++++.|.++......
T Consensus       175 NKaD~~gA~-~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~~  234 (266)
T PF03308_consen  175 NKADRPGAD-RTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYLKE  234 (266)
T ss_dssp             E--SHHHHH-HHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred             eCCChHHHH-HHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence            999964321 122333333322       23579999999999999999999876554443

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.13  E-value=6.7e-10  Score=86.84  Aligned_cols=124  Identities=19%  Similarity=0.265  Sum_probs=90.8

Q ss_pred             CCCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEE----------------------
Q 027856            6 ADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIV----------------------   62 (217)
Q Consensus         6 ~~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----------------------   62 (217)
                      .+.+.+...-|+++|+-..||||+|+.|+.+.++. ...+..++++....++-+...+                      
T Consensus        51 ~d~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~  130 (532)
T KOG1954|consen   51 EDPDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGN  130 (532)
T ss_pred             cCcccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHH
Confidence            45667788899999999999999999999998875 3345555666666554432221                      


Q ss_pred             -----------------EEEEEeCCChh-----------hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhh
Q 027856           63 -----------------KAQIWDTAGQE-----------RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDH  114 (217)
Q Consensus        63 -----------------~~~l~Dt~G~~-----------~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~  114 (217)
                                       .++++||||.-           .|.....-|...+|.||++||+...+-.++....+..+...
T Consensus       131 aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~  210 (532)
T KOG1954|consen  131 AFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH  210 (532)
T ss_pred             HHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC
Confidence                             78999999921           23344555778999999999998776555556666666554


Q ss_pred             cCCCCcEEEEEeCCCCCC
Q 027856          115 TDSNIVIMLVGNKADLRH  132 (217)
Q Consensus       115 ~~~~~p~ivv~nK~D~~~  132 (217)
                         .-.+-||.||.|.++
T Consensus       211 ---EdkiRVVLNKADqVd  225 (532)
T KOG1954|consen  211 ---EDKIRVVLNKADQVD  225 (532)
T ss_pred             ---cceeEEEeccccccC
Confidence               556778999999865

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.10  E-value=1.9e-09  Score=82.35  Aligned_cols=158  Identities=18%  Similarity=0.119  Sum_probs=95.5

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcC-----------CCCCcccc---------------eeEeEEEEEEECC-----
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEF-----------SLESKSTI---------------GVEFATRSIRCDD-----   59 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~-----------~~~~~~~~---------------~~~~~~~~~~~~~-----   59 (217)
                      .....|+|.|.||+|||||+..|...-.           +++.+.|-               ....+...+...|     
T Consensus        49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGl  128 (323)
T COG1703          49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGL  128 (323)
T ss_pred             CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhh
Confidence            3467899999999999999998876321           22221110               1111111111111     


Q ss_pred             -------------eEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEe
Q 027856           60 -------------KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGN  126 (217)
Q Consensus        60 -------------~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~n  126 (217)
                                   -.+.+.|++|.|-=   +.-......+|.++++.-..-.+..+.++.-+.++..        ++|+|
T Consensus       129 S~at~~~i~~ldAaG~DvIIVETVGvG---Qsev~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD--------i~vIN  197 (323)
T COG1703         129 SRATREAIKLLDAAGYDVIIVETVGVG---QSEVDIANMADTFLVVMIPGAGDDLQGIKAGIMEIAD--------IIVIN  197 (323)
T ss_pred             hHHHHHHHHHHHhcCCCEEEEEecCCC---cchhHHhhhcceEEEEecCCCCcHHHHHHhhhhhhhh--------eeeEe
Confidence                         11588899998721   1112244568999998777777666666555444443        79999


Q ss_pred             CCCCCCccCCCHHHHH---HHH----H--HcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 027856          127 KADLRHLRAVSTEDAT---AFA----E--RENTFFMETSALESMNVENAFTEVLTQIYRVVSR  180 (217)
Q Consensus       127 K~D~~~~~~~~~~~~~---~~~----~--~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~  180 (217)
                      |.|..... ....+..   ...    .  .+..+++.+||..|+|++++++.|.++.......
T Consensus       198 KaD~~~A~-~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~s  259 (323)
T COG1703         198 KADRKGAE-KAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTES  259 (323)
T ss_pred             ccChhhHH-HHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhc
Confidence            99964321 1111111   111    1  1446699999999999999999998876655433

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.07  E-value=5e-09  Score=82.63  Aligned_cols=145  Identities=19%  Similarity=0.267  Sum_probs=87.7

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCC---------CcccceeEeEEEEEEECCeEEEEEEEeCCChh--------
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLE---------SKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE--------   73 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------   73 (217)
                      -..++++++|..|.|||||||.|++..+...         ...+..+......+.-+|..+.++++||||.-        
T Consensus        19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~   98 (366)
T KOG2655|consen   19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC   98 (366)
T ss_pred             CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence            3569999999999999999999998754332         22244455555555557788899999999910        


Q ss_pred             ----------hhh-------hhhhhhh--cCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCc
Q 027856           74 ----------RYR-------AITSAYY--RGAVGALLVYDVTRHV-TFENVERWLKELRDHTDSNIVIMLVGNKADLRHL  133 (217)
Q Consensus        74 ----------~~~-------~~~~~~~--~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~  133 (217)
                                .+.       .+.+..+  ..+|+++|.+...... ..-++ ..+..+.    ..+.+|.|+.|.|....
T Consensus        99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di-~~Mk~l~----~~vNiIPVI~KaD~lT~  173 (366)
T KOG2655|consen   99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDI-EFMKKLS----KKVNLIPVIAKADTLTK  173 (366)
T ss_pred             chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhH-HHHHHHh----ccccccceeeccccCCH
Confidence                      111       0111112  2678999999876432 11111 2233332    36778999999997653


Q ss_pred             cCCC--HHHHHHHHHHcCCcEEEEecCCC
Q 027856          134 RAVS--TEDATAFAERENTFFMETSALES  160 (217)
Q Consensus       134 ~~~~--~~~~~~~~~~~~~~~~~~Sa~~~  160 (217)
                      .+..  ...+.+.+..+++.+|....-..
T Consensus       174 ~El~~~K~~I~~~i~~~nI~vf~fp~~~~  202 (366)
T KOG2655|consen  174 DELNQFKKRIRQDIEEHNIKVFDFPTDES  202 (366)
T ss_pred             HHHHHHHHHHHHHHHHcCcceecCCCCcc
Confidence            3221  12233445556777666555443

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.06  E-value=6.5e-09  Score=79.12  Aligned_cols=173  Identities=17%  Similarity=0.144  Sum_probs=104.0

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcC-------------C-CCCcccceeEeEEEEEEECCeEEEEEEEeCCChhh
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEF-------------S-LESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER   74 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~-------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   74 (217)
                      ...+.++|+.+|+-..|||||..+++.-..             . .-.....+++.....+.+.-....+-.+|+||+..
T Consensus         8 r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD   87 (394)
T COG0050           8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD   87 (394)
T ss_pred             CCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH
Confidence            455679999999999999999888765211             0 00011234444444444444445778999999999


Q ss_pred             hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCccCC---CHHHHHHHHHHcCC
Q 027856           75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV-IMLVGNKADLRHLRAV---STEDATAFAERENT  150 (217)
Q Consensus        75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~~  150 (217)
                      |-.....-..+.|+.|+|+++.+..-.+.-+..+ ..++   .+.| +++++||+|+.+..+.   -..|..++...+++
T Consensus        88 YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL-larq---vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f  163 (394)
T COG0050          88 YVKNMITGAAQMDGAILVVAATDGPMPQTREHIL-LARQ---VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGF  163 (394)
T ss_pred             HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh-hhhh---cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCC
Confidence            9988888888999999999999854322222211 1111   2554 6778899999874322   22334555566554


Q ss_pred             -----cEEEEecCCC-CC---HHHHHHHHHHHHHHHHhhhhhcc
Q 027856          151 -----FFMETSALES-MN---VENAFTEVLTQIYRVVSRKALEI  185 (217)
Q Consensus       151 -----~~~~~Sa~~~-~~---i~~~~~~i~~~~~~~~~~~~~~~  185 (217)
                           +++.-||..- ++   -.+-...+++++-.+....+.+.
T Consensus       164 ~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~~  207 (394)
T COG0050         164 PGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERDI  207 (394)
T ss_pred             CCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCcc
Confidence                 4666676642 22   22333344444444444444443

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.05  E-value=3.1e-10  Score=87.59  Aligned_cols=54  Identities=19%  Similarity=0.121  Sum_probs=39.6

Q ss_pred             CcEEEEEeCCCCCCccCCCHHHHHHHHHH--cCCcEEEEecCCCCCHHHHHHHHHH
Q 027856          119 IVIMLVGNKADLRHLRAVSTEDATAFAER--ENTFFMETSALESMNVENAFTEVLT  172 (217)
Q Consensus       119 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~  172 (217)
                      ..-++|+||+|+........+...+..+.  .+.+++++|+++|+|++++++||..
T Consensus       231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~  286 (290)
T PRK10463        231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLET  286 (290)
T ss_pred             cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            44589999999975322234444444444  3577999999999999999999976

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.04  E-value=2.6e-09  Score=89.15  Aligned_cols=117  Identities=25%  Similarity=0.290  Sum_probs=84.5

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCC---------cc--------cceeEeEEEEE---EECCeEEEEEEEeC
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLES---------KS--------TIGVEFATRSI---RCDDKIVKAQIWDT   69 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~---------~~--------~~~~~~~~~~~---~~~~~~~~~~l~Dt   69 (217)
                      .+...+|+++|+-++|||+|+.-|..+..+...         ..        ..++.....++   ..+++.+-++++||
T Consensus       125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT  204 (971)
T KOG0468|consen  125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT  204 (971)
T ss_pred             cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence            456789999999999999999998876542221         11        11111222222   22577789999999


Q ss_pred             CChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 027856           70 AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL  130 (217)
Q Consensus        70 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~  130 (217)
                      ||+..+..-....++.+|++++|+|+...-+++. +..+....+   ...|+++|+||+|.
T Consensus       205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhaiq---~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAIQ---NRLPIVVVINKVDR  261 (971)
T ss_pred             CCcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHHHh---ccCcEEEEEehhHH
Confidence            9999998888889999999999999988776553 233333222   47899999999996

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.01  E-value=2.3e-09  Score=87.64  Aligned_cols=165  Identities=21%  Similarity=0.348  Sum_probs=121.8

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      +.+.+|++|+|..++|||+|+.+++-+.+.....+.-+  .+...+-+++....+.+.|.+|..     ..-|...+|++
T Consensus        27 sipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdav   99 (749)
T KOG0705|consen   27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAV   99 (749)
T ss_pred             ccchhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCc-----hhhhhhhccce
Confidence            44678999999999999999999998887665544332  445556678888888888888832     22355678999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCC--ccCCCHHHHHHH-HHHcCCcEEEEecCCCCCHHH
Q 027856           90 LLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRH--LRAVSTEDATAF-AERENTFFMETSALESMNVEN  165 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~--~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~i~~  165 (217)
                      |||+...+..+++.+..+...+..+.. ..+|.++++++.-...  .+.+...+..+. ++...+.||++++.+|.++..
T Consensus       100 Ifvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~r  179 (749)
T KOG0705|consen  100 VFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVER  179 (749)
T ss_pred             EEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHH
Confidence            999999999999988877776654443 4678888888754422  123333344444 444568899999999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q 027856          166 AFTEVLTQIYRVVSRK  181 (217)
Q Consensus       166 ~~~~i~~~~~~~~~~~  181 (217)
                      +|+.+...+...+...
T Consensus       180 vf~~~~~k~i~~~~~q  195 (749)
T KOG0705|consen  180 VFQEVAQKIVQLRKYQ  195 (749)
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            9999998888775544

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=98.99  E-value=6.5e-09  Score=83.06  Aligned_cols=132  Identities=18%  Similarity=0.183  Sum_probs=89.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC--cC----------C---CCC-----cccceeEeEEEEEEECCeEEEEEEEeCCCh
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN--EF----------S---LES-----KSTIGVEFATRSIRCDDKIVKAQIWDTAGQ   72 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~--~~----------~---~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   72 (217)
                      .-..+|+-+|.+|||||-..|+--  -.          .   ..+     ....|+......++++.....++|.||||+
T Consensus        12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGH   91 (528)
T COG4108          12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGH   91 (528)
T ss_pred             hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCc
Confidence            456789999999999999987641  11          0   000     113455555666666666679999999999


Q ss_pred             hhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCC
Q 027856           73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENT  150 (217)
Q Consensus        73 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~  150 (217)
                      +.|..-+...+.-+|..+.|+|+...-..+. .++++..+-   .++|++=++||+|....  -..+.+.+....+++
T Consensus        92 eDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-~KLfeVcrl---R~iPI~TFiNKlDR~~r--dP~ELLdEiE~~L~i  163 (528)
T COG4108          92 EDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-LKLFEVCRL---RDIPIFTFINKLDREGR--DPLELLDEIEEELGI  163 (528)
T ss_pred             cccchhHHHHHHhhheeeEEEecccCccHHH-HHHHHHHhh---cCCceEEEeeccccccC--ChHHHHHHHHHHhCc
Confidence            9998877777888999999999976543222 234444333   49999999999997542  234444455444443

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.99  E-value=1.7e-09  Score=80.82  Aligned_cols=153  Identities=22%  Similarity=0.189  Sum_probs=98.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhh-------hhhhhhhhcC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY-------RAITSAYYRG   85 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~   85 (217)
                      .-+|.++|.|.+||||++..|.+..-........+.........+++  -++++.|.||.-+-       ........+.
T Consensus        59 ~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavart  136 (358)
T KOG1487|consen   59 DARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVART  136 (358)
T ss_pred             ceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeec
Confidence            44899999999999999999998775544334445555555555666  58899999994322       2233455678


Q ss_pred             CcEEEEEEECCChhhHHHH-----------------------------------------HHHHHHHHhhc---------
Q 027856           86 AVGALLVYDVTRHVTFENV-----------------------------------------ERWLKELRDHT---------  115 (217)
Q Consensus        86 ~d~ii~v~d~~~~~s~~~~-----------------------------------------~~~~~~l~~~~---------  115 (217)
                      |+.+++|.|+..|-+-..+                                         ...+.+.+...         
T Consensus       137 cnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~Da  216 (358)
T KOG1487|consen  137 CNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDA  216 (358)
T ss_pred             ccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCc
Confidence            9999999998764332111                                         11111111000         


Q ss_pred             ----------C--CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCc-EEEEecCCCCCHHHHHHHHHHHHH
Q 027856          116 ----------D--SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       116 ----------~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~i~~~~~  175 (217)
                                +  ..+|++.+.||+|...     .+|..-.   ..++ .+++||..++|++++++.+.+.+-
T Consensus       217 T~DdLIdvVegnr~yVp~iyvLNkIdsIS-----iEELdii---~~iphavpISA~~~wn~d~lL~~mweyL~  281 (358)
T KOG1487|consen  217 TADDLIDVVEGNRIYVPCIYVLNKIDSIS-----IEELDII---YTIPHAVPISAHTGWNFDKLLEKMWEYLK  281 (358)
T ss_pred             chhhhhhhhccCceeeeeeeeecccceee-----eecccee---eeccceeecccccccchHHHHHHHhhcch
Confidence                      0  1467888888888533     3322211   1222 788999999999999999988654

>cd01855 YqeH YqeH

Probab=98.95  E-value=8.2e-09  Score=76.04  Aligned_cols=93  Identities=18%  Similarity=0.107  Sum_probs=65.7

Q ss_pred             hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHH-----HHcC
Q 027856           75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFA-----EREN  149 (217)
Q Consensus        75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~  149 (217)
                      +...+..+++.+|++++|+|++++..     .|...+... ..+.|+++|+||+|+... ....+....+.     ...+
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~-~~~~~~ilV~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~   96 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLF-GGNNPVILVGNKIDLLPK-DKNLVRIKNWLRAKAAAGLG   96 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHh-cCCCcEEEEEEchhcCCC-CCCHHHHHHHHHHHHHhhcC
Confidence            57788889999999999999987642     122222211 236899999999999653 22333333333     2233


Q ss_pred             C---cEEEEecCCCCCHHHHHHHHHHHH
Q 027856          150 T---FFMETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       150 ~---~~~~~Sa~~~~~i~~~~~~i~~~~  174 (217)
                      .   .++++||++|.|++++++.|.+.+
T Consensus        97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l  124 (190)
T cd01855          97 LKPKDVILISAKKGWGVEELINAIKKLA  124 (190)
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence            2   589999999999999999998865

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01859 MJ1464 MJ1464

Probab=98.94  E-value=4.3e-09  Score=75.00  Aligned_cols=95  Identities=16%  Similarity=0.096  Sum_probs=65.3

Q ss_pred             hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEE
Q 027856           75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFME  154 (217)
Q Consensus        75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  154 (217)
                      ++.+....+.++|++++|+|++++..... ..+...+..   .++|+++|+||+|+.....  ......+....+.+++.
T Consensus         2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~   75 (156)
T cd01859           2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVLE---LGKKLLIVLNKADLVPKEV--LEKWKSIKESEGIPVVY   75 (156)
T ss_pred             HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHHh---CCCcEEEEEEhHHhCCHHH--HHHHHHHHHhCCCcEEE
Confidence            34567778889999999999987653222 122222222   3689999999999854211  11122233445677999


Q ss_pred             EecCCCCCHHHHHHHHHHHHH
Q 027856          155 TSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       155 ~Sa~~~~~i~~~~~~i~~~~~  175 (217)
                      +||+++.|++++++.+.+.+.
T Consensus        76 iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          76 VSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             EEccccccHHHHHHHHHHHHh
Confidence            999999999999999987765

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.94  E-value=9e-08  Score=78.70  Aligned_cols=168  Identities=15%  Similarity=0.136  Sum_probs=104.4

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCc-c-------------------------------------------
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESK-S-------------------------------------------   44 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~-~-------------------------------------------   44 (217)
                      -.++.++|+|||+..+||||.+..+......+... .                                           
T Consensus       304 t~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~  383 (980)
T KOG0447|consen  304 TQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEI  383 (980)
T ss_pred             ccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHH
Confidence            45678999999999999999999877654322211 1                                           


Q ss_pred             ----------cceeEeEEEEEEECCeE-EEEEEEeCCC-------------hhhhhhhhhhhhcCCcEEEEEEECCChhh
Q 027856           45 ----------TIGVEFATRSIRCDDKI-VKAQIWDTAG-------------QERYRAITSAYYRGAVGALLVYDVTRHVT  100 (217)
Q Consensus        45 ----------~~~~~~~~~~~~~~~~~-~~~~l~Dt~G-------------~~~~~~~~~~~~~~~d~ii~v~d~~~~~s  100 (217)
                                .-+.......+.+.|.. -.+.++|.||             .+...++..+++.+.++||+|+--..-+.
T Consensus       384 E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDA  463 (980)
T KOG0447|consen  384 ELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDA  463 (980)
T ss_pred             HHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcch
Confidence                      11122222233333322 3778999999             23445667788999999999975322211


Q ss_pred             HHHHHHHH-HHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCC-----cEEEEecCCCCCHHHHHHHHHHHH
Q 027856          101 FENVERWL-KELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENT-----FFMETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       101 ~~~~~~~~-~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-----~~~~~Sa~~~~~i~~~~~~i~~~~  174 (217)
                         -+... ..+.+....+...|+|++|.|+.+..-.+...+++.....-+     .||-+-.-.|.. ++.++.|-++=
T Consensus       464 ---ERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrGns-sdSIdaIR~YE  539 (980)
T KOG0447|consen  464 ---ERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKGNS-SESIEAIREYE  539 (980)
T ss_pred             ---hhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCccchhhcceeEEEecCCCc-chhHHHHHHHH
Confidence               12222 223333335788999999999998777888888888776422     266666555533 45555555444


Q ss_pred             HHHHhh
Q 027856          175 YRVVSR  180 (217)
Q Consensus       175 ~~~~~~  180 (217)
                      .+.+..
T Consensus       540 E~FF~n  545 (980)
T KOG0447|consen  540 EEFFQN  545 (980)
T ss_pred             HHHhhh
Confidence            444433

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.93  E-value=3e-09  Score=76.83  Aligned_cols=57  Identities=26%  Similarity=0.398  Sum_probs=42.2

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCC
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAG   71 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   71 (217)
                      ...++++++|.||+|||||+|+|++....... +..+++.....+..+.   .+.++||||
T Consensus       115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~-~~pg~T~~~~~~~~~~---~~~l~DtPG  171 (172)
T cd04178         115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVG-ATPGVTKSMQEVHLDK---KVKLLDSPG  171 (172)
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCcccceec-CCCCeEcceEEEEeCC---CEEEEECcC
Confidence            44589999999999999999999997654433 3345555445554443   578999998

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.91  E-value=3.5e-09  Score=74.20  Aligned_cols=54  Identities=24%  Similarity=0.271  Sum_probs=40.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ   72 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   72 (217)
                      +++++|.+|+|||||+|++++....... ...+.+.....+.+++   .+.+|||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVS-ATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCcccceEEEEeCC---CEEEEECCCc
Confidence            8999999999999999999998764322 3344444455555554   5789999994

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd01858 NGP_1 NGP-1

Probab=98.89  E-value=6e-09  Score=74.36  Aligned_cols=56  Identities=20%  Similarity=0.230  Sum_probs=39.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCC
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAG   71 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   71 (217)
                      ..++|+++|.+|+|||||+|+|.+....... +..+.+.....+..+.   .+.++||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVA-PIPGETKVWQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeC-CCCCeeEeEEEEEcCC---CEEEEECcC
Confidence            3578999999999999999999987654433 3344444444443333   368999998

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PRK12289 GTPase RsgA; Reviewed

Probab=98.88  E-value=1.1e-08  Score=81.72  Aligned_cols=92  Identities=16%  Similarity=0.130  Sum_probs=67.3

Q ss_pred             hhhhhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEE
Q 027856           77 AITSAYYRGAVGALLVYDVTRHV-TFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMET  155 (217)
Q Consensus        77 ~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (217)
                      .+....+.++|.+++|+|+.++. ....+..|+..+..   .++|+++|+||+|+.....  .+........++..++.+
T Consensus        81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~~v~~i  155 (352)
T PRK12289         81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGYQPLFI  155 (352)
T ss_pred             ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHH--HHHHHHHHHhcCCeEEEE
Confidence            34455688999999999998775 44455667665533   3789999999999964221  122233345678889999


Q ss_pred             ecCCCCCHHHHHHHHHHH
Q 027856          156 SALESMNVENAFTEVLTQ  173 (217)
Q Consensus       156 Sa~~~~~i~~~~~~i~~~  173 (217)
                      ||.++.|++++++.+...
T Consensus       156 SA~tg~GI~eL~~~L~~k  173 (352)
T PRK12289        156 SVETGIGLEALLEQLRNK  173 (352)
T ss_pred             EcCCCCCHHHHhhhhccc
Confidence            999999999999888643

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.86  E-value=2.3e-08  Score=74.14  Aligned_cols=167  Identities=16%  Similarity=0.180  Sum_probs=98.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhh---hhhhhhcCCcEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRA---ITSAYYRGAVGA   89 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~d~i   89 (217)
                      ..+|+++|..-+||||+-+....+..+... -..+.+.....-++....+.+.+||.||+..+-.   -.+..++++.++
T Consensus        27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneT-lflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL  105 (347)
T KOG3887|consen   27 KPRILLMGLRRSGKSSIQKVVFHKMSPNET-LFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL  105 (347)
T ss_pred             CceEEEEeecccCcchhhheeeeccCCCce-eEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence            477999999999999998776655433222 1111111111112233457899999999764432   346678999999


Q ss_pred             EEEEECCChh--hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCcc-CC-CHHHH----HHHHHH-----cCCcEEEEe
Q 027856           90 LLVYDVTRHV--TFENVERWLKELRDHTDSNIVIMLVGNKADLRHLR-AV-STEDA----TAFAER-----ENTFFMETS  156 (217)
Q Consensus        90 i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~-~~-~~~~~----~~~~~~-----~~~~~~~~S  156 (217)
                      ++|+|+.+..  .+..+.......... .+++.+=+.+.|.|...++ .+ ....+    .+....     ..+.|+.+|
T Consensus       106 ifvIDaQddy~eala~L~~~v~raykv-Np~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS  184 (347)
T KOG3887|consen  106 IFVIDAQDDYMEALARLHMTVERAYKV-NPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS  184 (347)
T ss_pred             EEEEechHHHHHHHHHHHHHhhheeec-CCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee
Confidence            9999987642  222222222222222 2578888999999975421 11 11111    111111     223356666


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHhhhh
Q 027856          157 ALESMNVENAFTEVLTQIYRVVSRKA  182 (217)
Q Consensus       157 a~~~~~i~~~~~~i~~~~~~~~~~~~  182 (217)
                      ..+ ..+-+.|..+++++..+.+.-+
T Consensus       185 IyD-HSIfEAFSkvVQkLipqLptLE  209 (347)
T KOG3887|consen  185 IYD-HSIFEAFSKVVQKLIPQLPTLE  209 (347)
T ss_pred             ecc-hHHHHHHHHHHHHHhhhchhHH
Confidence            554 4688999999888876655443

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.85  E-value=1.7e-08  Score=78.98  Aligned_cols=88  Identities=15%  Similarity=0.034  Sum_probs=67.6

Q ss_pred             hhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecC
Q 027856           80 SAYYRGAVGALLVYDVTRHV-TFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSAL  158 (217)
Q Consensus        80 ~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  158 (217)
                      ...+.++|.+++|+|+.++. ++..++.|+..+...   ++|+++|+||+|+.+..  ............+.+++.+||+
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~g~~v~~vSA~  147 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDDE--EEELELVEALALGYPVLAVSAK  147 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCChH--HHHHHHHHHHhCCCeEEEEECC
Confidence            33578999999999999887 778888888877653   78999999999996531  1112233344567889999999


Q ss_pred             CCCCHHHHHHHHHH
Q 027856          159 ESMNVENAFTEVLT  172 (217)
Q Consensus       159 ~~~~i~~~~~~i~~  172 (217)
                      ++.|+++++..+..
T Consensus       148 ~g~gi~~L~~~L~~  161 (287)
T cd01854         148 TGEGLDELREYLKG  161 (287)
T ss_pred             CCccHHHHHhhhcc
Confidence            99999998887653

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=1.3e-07  Score=79.42  Aligned_cols=118  Identities=15%  Similarity=0.225  Sum_probs=74.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEE---------------------------------------
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFAT---------------------------------------   52 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~---------------------------------------   52 (217)
                      ...||++.|..++||||++|+++....-++..-..+.-+..                                       
T Consensus       108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~  187 (749)
T KOG0448|consen  108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG  187 (749)
T ss_pred             cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence            46899999999999999999999865543321111000000                                       


Q ss_pred             ----EEEEECCe-----EEEEEEEeCCCh---hhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc
Q 027856           53 ----RSIRCDDK-----IVKAQIWDTAGQ---ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV  120 (217)
Q Consensus        53 ----~~~~~~~~-----~~~~~l~Dt~G~---~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p  120 (217)
                          ..+.+++.     .-.+.++|.||.   ....+-...+...+|++|+|.++.+..+..+ ..++......   +..
T Consensus       188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~~---Kpn  263 (749)
T KOG0448|consen  188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSEE---KPN  263 (749)
T ss_pred             cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhcc---CCc
Confidence                00000000     016779999993   3445555677789999999999987765443 3444444432   455


Q ss_pred             EEEEEeCCCCCCc
Q 027856          121 IMLVGNKADLRHL  133 (217)
Q Consensus       121 ~ivv~nK~D~~~~  133 (217)
                      ++|+-||+|....
T Consensus       264 iFIlnnkwDasas  276 (749)
T KOG0448|consen  264 IFILNNKWDASAS  276 (749)
T ss_pred             EEEEechhhhhcc
Confidence            6777799998653

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.81  E-value=2.2e-07  Score=75.95  Aligned_cols=112  Identities=18%  Similarity=0.180  Sum_probs=76.3

Q ss_pred             EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhh----------HHHHHHHH-HHHHhhcCCCCcEEEEEeCCCC
Q 027856           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVT----------FENVERWL-KELRDHTDSNIVIMLVGNKADL  130 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s----------~~~~~~~~-~~l~~~~~~~~p~ivv~nK~D~  130 (217)
                      ..+.++|++|+...+..|..++.+++++|||+++++..-          +.+.-.++ ..+....-.+.|++|++||.|+
T Consensus       236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~  315 (389)
T PF00503_consen  236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL  315 (389)
T ss_dssp             EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred             cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence            688999999999999999999999999999999875321          22222223 3333333357999999999997


Q ss_pred             CCc----------------c--CCCHHHHHHHHHH------------cCCcEEEEecCCCCCHHHHHHHHHHH
Q 027856          131 RHL----------------R--AVSTEDATAFAER------------ENTFFMETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus       131 ~~~----------------~--~~~~~~~~~~~~~------------~~~~~~~~Sa~~~~~i~~~~~~i~~~  173 (217)
                      ..+                .  .-..+.+..+...            ..+.+..++|.+..++..+|+.+.+-
T Consensus       316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~  388 (389)
T PF00503_consen  316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDI  388 (389)
T ss_dssp             HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHH
T ss_pred             HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCc
Confidence            321                0  1234555555443            11246688888888899998887754

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.80  E-value=2e-08  Score=75.90  Aligned_cols=159  Identities=18%  Similarity=0.151  Sum_probs=94.1

Q ss_pred             CCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCc-ccceeEeEEEEEEECCeEEEEEEEeCCC----------hhhh
Q 027856            7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEFATRSIRCDDKIVKAQIWDTAG----------QERY   75 (217)
Q Consensus         7 ~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~   75 (217)
                      |-+....++++++|.+++|||+|++-++..+...... +..+.+.....+.+..   .+.++|.||          ...+
T Consensus       130 D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~  206 (320)
T KOG2486|consen  130 DCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADW  206 (320)
T ss_pred             cCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchH
Confidence            4445667999999999999999999988866533222 2444444444444444   778999999          1233


Q ss_pred             hhhhhhhhc---CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC-------CC----HHHH
Q 027856           76 RAITSAYYR---GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA-------VS----TEDA  141 (217)
Q Consensus        76 ~~~~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~-------~~----~~~~  141 (217)
                      ......|+.   +---+++.+|++-+....+. ..+..+.+   .+.|..+|+||+|......       ..    ...+
T Consensus       207 ~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~-~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l  282 (320)
T KOG2486|consen  207 DKFTKSYLLERENLVRVFLLVDASVPIQPTDN-PEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGL  282 (320)
T ss_pred             hHhHHHHHHhhhhhheeeeeeeccCCCCCCCh-HHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhc
Confidence            333344432   22235566676654321111 11222222   3899999999999743110       00    1111


Q ss_pred             HHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 027856          142 TAFAERENTFFMETSALESMNVENAFTEVLT  172 (217)
Q Consensus       142 ~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  172 (217)
                      .+-......+|+.+|+.++.|++.++-.|..
T Consensus       283 ~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  283 IRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             cccceeccCCceeeecccccCceeeeeehhh
Confidence            1112223456889999999999988766653

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.80  E-value=3.8e-08  Score=77.36  Aligned_cols=156  Identities=21%  Similarity=0.246  Sum_probs=99.3

Q ss_pred             CCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCC----------------cc-------cceeEeEEEEEEEC-----
Q 027856            7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLES----------------KS-------TIGVEFATRSIRCD-----   58 (217)
Q Consensus         7 ~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~-------~~~~~~~~~~~~~~-----   58 (217)
                      |......++++++|.-.+|||||+-.|..+..+...                ..       ..|.+.....+.+.     
T Consensus       161 d~QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~ta  240 (591)
T KOG1143|consen  161 DSQQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTA  240 (591)
T ss_pred             CcccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccH
Confidence            444556799999999999999999988876543221                11       22222222222221     


Q ss_pred             -----CeEEEEEEEeCCChhhhhhhhhhhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027856           59 -----DKIVKAQIWDTAGQERYRAITSAYYR--GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        59 -----~~~~~~~l~Dt~G~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~  131 (217)
                           ...--++++|.+|+..|.+..-..+.  ..|..++|+++....++.. +.-+..+...   ++|++++++|+|+.
T Consensus       241 EEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~AL---~iPfFvlvtK~Dl~  316 (591)
T KOG1143|consen  241 EEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAAL---NIPFFVLVTKMDLV  316 (591)
T ss_pred             HHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHHh---CCCeEEEEEeeccc
Confidence                 11236789999999999876654443  3488999999987765433 2223333333   89999999999996


Q ss_pred             Ccc------------------------CCCHHHHHHHHHH----cCCcEEEEecCCCCCHHHH
Q 027856          132 HLR------------------------AVSTEDATAFAER----ENTFFMETSALESMNVENA  166 (217)
Q Consensus       132 ~~~------------------------~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~~~  166 (217)
                      +..                        ..+..++...+++    +-.++|.+|+.+|++++-+
T Consensus       317 ~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll  379 (591)
T KOG1143|consen  317 DRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL  379 (591)
T ss_pred             cchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence            531                        1122333333333    3356899999999997654

>PRK00098 GTPase RsgA; Reviewed

Probab=98.79  E-value=2.7e-08  Score=78.29  Aligned_cols=86  Identities=19%  Similarity=0.119  Sum_probs=64.3

Q ss_pred             hhcCCcEEEEEEECCChhhHHH-HHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCC
Q 027856           82 YYRGAVGALLVYDVTRHVTFEN-VERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALES  160 (217)
Q Consensus        82 ~~~~~d~ii~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  160 (217)
                      ...++|.+++|+|+.++.+... +..|+..+..   .++|+++|+||+|+.+... ...+..+.....+.+++++||+++
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g  152 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG  152 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence            4589999999999988765443 4667766654   3789999999999963221 122344455567888999999999


Q ss_pred             CCHHHHHHHHH
Q 027856          161 MNVENAFTEVL  171 (217)
Q Consensus       161 ~~i~~~~~~i~  171 (217)
                      .|++++++.+.
T Consensus       153 ~gi~~L~~~l~  163 (298)
T PRK00098        153 EGLDELKPLLA  163 (298)
T ss_pred             ccHHHHHhhcc
Confidence            99999998764

>PRK12288 GTPase RsgA; Reviewed

Probab=98.78  E-value=5.8e-08  Score=77.68  Aligned_cols=87  Identities=14%  Similarity=0.088  Sum_probs=66.7

Q ss_pred             hcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC-CHHHHHHHHHHcCCcEEEEecCCCC
Q 027856           83 YRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV-STEDATAFAERENTFFMETSALESM  161 (217)
Q Consensus        83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~  161 (217)
                      ..++|.+++|++.....++..+..|+.....   .++|+++|+||+|+....+. ...+........+.+++++||+++.
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~  194 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE  194 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            4679999999999888889888888876543   37899999999999653211 1122233345567889999999999


Q ss_pred             CHHHHHHHHHH
Q 027856          162 NVENAFTEVLT  172 (217)
Q Consensus       162 ~i~~~~~~i~~  172 (217)
                      |++++++.+..
T Consensus       195 GideL~~~L~~  205 (347)
T PRK12288        195 GLEELEAALTG  205 (347)
T ss_pred             CHHHHHHHHhh
Confidence            99999998865

>cd01856 YlqF YlqF

Probab=98.76  E-value=2.9e-08  Score=71.87  Aligned_cols=58  Identities=22%  Similarity=0.302  Sum_probs=42.0

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ   72 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   72 (217)
                      ...++++++|.+|+|||||++++.+..+... ....+++.....+.++   ..+.+|||||.
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            3457999999999999999999999876432 2333444444545444   35789999993

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.75  E-value=3.8e-08  Score=77.12  Aligned_cols=58  Identities=26%  Similarity=0.398  Sum_probs=43.3

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ   72 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   72 (217)
                      ...++|+++|.||+|||||+|+|.+....... +..+.+.....+..+.   .+.++||||.
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPGi  176 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTG-NRPGVTKAQQWIKLGK---GLELLDTPGI  176 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCccccC-CCCCeEEEEEEEEeCC---cEEEEECCCc
Confidence            35689999999999999999999998754332 3445555555555544   5789999994

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.75  E-value=3.4e-08  Score=76.99  Aligned_cols=58  Identities=24%  Similarity=0.403  Sum_probs=42.8

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ   72 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   72 (217)
                      ...++++++|.||+|||||+|+|.+....... ...+.+.....+..+.   .+.++||||.
T Consensus       116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVG-NRPGVTKGQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCccccC-CCCCeecceEEEEeCC---CEEEEECCCc
Confidence            34689999999999999999999987654432 3344455555555543   5689999995

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.74  E-value=2.5e-07  Score=73.12  Aligned_cols=156  Identities=18%  Similarity=0.126  Sum_probs=94.5

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcc--------------cceeEeEEEEEEECCe--------------
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKS--------------TIGVEFATRSIRCDDK--------------   60 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~--------------   60 (217)
                      ..+..+.+++.|+-..|||||+-.|.-+..+.....              ..+.+.....+-+++.              
T Consensus       113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~  192 (527)
T COG5258         113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK  192 (527)
T ss_pred             CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence            355679999999999999999988776544222111              1111111222222211              


Q ss_pred             -------EEEEEEEeCCChhhhhhhhh--hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027856           61 -------IVKAQIWDTAGQERYRAITS--AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        61 -------~~~~~l~Dt~G~~~~~~~~~--~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~  131 (217)
                             .--+.|+||.|++.|.....  .+-.+.|..++++.+++.-+.-.-    +-+.-...-+.|+++++||+|+.
T Consensus       193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tk----EHLgi~~a~~lPviVvvTK~D~~  268 (527)
T COG5258         193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTK----EHLGIALAMELPVIVVVTKIDMV  268 (527)
T ss_pred             hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhh----HhhhhhhhhcCCEEEEEEecccC
Confidence                   12678999999998876443  334678999999999987543221    11222222389999999999996


Q ss_pred             CccCCC--HHHHHHH----------------------HHH--c-CCcEEEEecCCCCCHHHHHH
Q 027856          132 HLRAVS--TEDATAF----------------------AER--E-NTFFMETSALESMNVENAFT  168 (217)
Q Consensus       132 ~~~~~~--~~~~~~~----------------------~~~--~-~~~~~~~Sa~~~~~i~~~~~  168 (217)
                      ....+.  .+++.+.                      +..  . -+++|.+|+.+|+|++-+.+
T Consensus       269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e  332 (527)
T COG5258         269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDE  332 (527)
T ss_pred             cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHH
Confidence            532110  1111111                      111  1 25699999999999765433

>TIGR00092 GTP-binding protein YchF

Probab=98.73  E-value=5.1e-08  Score=77.90  Aligned_cols=83  Identities=18%  Similarity=0.044  Sum_probs=61.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcC-CCCCcccceeEeEEEEEEECCe---------------EEEEEEEeCCChhh---
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEF-SLESKSTIGVEFATRSIRCDDK---------------IVKAQIWDTAGQER---   74 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~---   74 (217)
                      ++++++|.|++|||||++.|++... .....+..+.+.....+.+.+.               ...+.+.|.||...   
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999999886 4443355555566666666543               24678999999433   


Q ss_pred             ----hhhhhhhhhcCCcEEEEEEECC
Q 027856           75 ----YRAITSAYYRGAVGALLVYDVT   96 (217)
Q Consensus        75 ----~~~~~~~~~~~~d~ii~v~d~~   96 (217)
                          ........++.+|++++|+++.
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence                2223344678999999999985

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.72  E-value=1e-07  Score=76.94  Aligned_cols=95  Identities=16%  Similarity=0.203  Sum_probs=69.7

Q ss_pred             hhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHH----HHHH
Q 027856           72 QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATA----FAER  147 (217)
Q Consensus        72 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~----~~~~  147 (217)
                      .+.+..+...+++.++++++|+|+.+..     ..|...+..... +.|+++|+||+|+.. +....+++.+    ++..
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-~~piilV~NK~DLl~-k~~~~~~~~~~l~~~~k~  122 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-GNPVLLVGNKIDLLP-KSVNLSKIKEWMKKRAKE  122 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-CCCEEEEEEchhhCC-CCCCHHHHHHHHHHHHHH
Confidence            5678888888889999999999997654     234444444332 679999999999965 2333444443    3555


Q ss_pred             cCC---cEEEEecCCCCCHHHHHHHHHHH
Q 027856          148 ENT---FFMETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus       148 ~~~---~~~~~Sa~~~~~i~~~~~~i~~~  173 (217)
                      .++   .++.+||++|.|++++|+.+.+.
T Consensus       123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       123 LGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            665   48999999999999999998654

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd01855 YqeH YqeH

Probab=98.70  E-value=3.6e-08  Score=72.58  Aligned_cols=56  Identities=23%  Similarity=0.392  Sum_probs=39.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCC-------CCCcccceeEeEEEEEEECCeEEEEEEEeCCC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFS-------LESKSTIGVEFATRSIRCDDKIVKAQIWDTAG   71 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   71 (217)
                      ..+++++|.+|+|||||+|+|.+....       .......+++.....+..+.   .+.++||||
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG  189 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG  189 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence            358999999999999999999986431       12223334555555555543   468999999

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.70  E-value=2.1e-07  Score=85.54  Aligned_cols=113  Identities=27%  Similarity=0.356  Sum_probs=71.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCcCCCCC----cccceeE-eEEEEEEECCeEEEEEEEeCCCh----h----hhhhhhhhh
Q 027856           16 VVLIGDSGVGKSNLLSRFTRNEFSLES----KSTIGVE-FATRSIRCDDKIVKAQIWDTAGQ----E----RYRAITSAY   82 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~l~Dt~G~----~----~~~~~~~~~   82 (217)
                      -+|+|++|+||||++++- |..++...    ..+.+.. .....+.+.+   ...++||+|.    +    .....|..+
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~f  189 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLGF  189 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecC---CEEEEcCCCccccCCCcccccHHHHHHH
Confidence            589999999999999886 44443321    1111110 0122333344   4569999992    1    222334444


Q ss_pred             h---------cCCcEEEEEEECCChhh---------HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856           83 Y---------RGAVGALLVYDVTRHVT---------FENVERWLKELRDHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        83 ~---------~~~d~ii~v~d~~~~~s---------~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  132 (217)
                      +         ...+++|+++|+.+.-+         -..++..+.++....+...|+.+++||+|+..
T Consensus       190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA  257 (1169)
T ss_pred             HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence            3         35799999999875321         13345566777777778999999999999865

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>cd01859 MJ1464 MJ1464

Probab=98.70  E-value=6.7e-08  Score=68.85  Aligned_cols=56  Identities=21%  Similarity=0.300  Sum_probs=40.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCC
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAG   71 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   71 (217)
                      ...+++++|.+|+|||||+++|.+.... ...++.+.+.....+..+.   .+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            4578999999999999999999976533 3334555544433333333   688999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.70  E-value=3.3e-07  Score=75.83  Aligned_cols=137  Identities=18%  Similarity=0.190  Sum_probs=84.5

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      .++++-++|+|+||+||||||+.|...-.........|    +.++ +.++...+++.++|.+  . +......+-+|.+
T Consensus        66 ~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G----PiTv-vsgK~RRiTflEcp~D--l-~~miDvaKIaDLV  137 (1077)
T COG5192          66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG----PITV-VSGKTRRITFLECPSD--L-HQMIDVAKIADLV  137 (1077)
T ss_pred             CCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC----ceEE-eecceeEEEEEeChHH--H-HHHHhHHHhhhee
Confidence            34567788999999999999998876532211111111    2222 4566779999999942  2 2233456778999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCccCCCHHHHHH-----HHHH--cCCcEEEEecCC
Q 027856           90 LLVYDVTRHVTFENVERWLKELRDHTDSNIV-IMLVGNKADLRHLRAVSTEDATA-----FAER--ENTFFMETSALE  159 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~-----~~~~--~~~~~~~~Sa~~  159 (217)
                      ++++|..-....+.+ .+++.+..+   +.| ++-|+|..|+.... .....+..     +..+  .|+.+|.+|...
T Consensus       138 lLlIdgnfGfEMETm-EFLnil~~H---GmPrvlgV~ThlDlfk~~-stLr~~KKrlkhRfWtEiyqGaKlFylsgV~  210 (1077)
T COG5192         138 LLLIDGNFGFEMETM-EFLNILISH---GMPRVLGVVTHLDLFKNP-STLRSIKKRLKHRFWTEIYQGAKLFYLSGVE  210 (1077)
T ss_pred             EEEeccccCceehHH-HHHHHHhhc---CCCceEEEEeecccccCh-HHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence            999998766443332 355555544   555 55688999996532 22222221     2222  367889988765

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.69  E-value=5.1e-08  Score=75.68  Aligned_cols=88  Identities=15%  Similarity=0.150  Sum_probs=65.5

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCe---------------EEEEEEEeCCChhh
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK---------------IVKAQIWDTAGQER   74 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~   74 (217)
                      ....++|++||.|++|||||.|.|+........-|..+++.....+.+.+.               ...++++|++|...
T Consensus        17 ~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk   96 (391)
T KOG1491|consen   17 DGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK   96 (391)
T ss_pred             CCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence            346789999999999999999999998887665577777776666555322               35889999999332


Q ss_pred             -------hhhhhhhhhcCCcEEEEEEECCC
Q 027856           75 -------YRAITSAYYRGAVGALLVYDVTR   97 (217)
Q Consensus        75 -------~~~~~~~~~~~~d~ii~v~d~~~   97 (217)
                             +......-++.+|+++.|+++..
T Consensus        97 GAs~G~GLGN~FLs~iR~vDaifhVVr~f~  126 (391)
T KOG1491|consen   97 GASAGEGLGNKFLSHIRHVDAIFHVVRAFE  126 (391)
T ss_pred             CcccCcCchHHHHHhhhhccceeEEEEecC
Confidence                   22223345678999999998764

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.66  E-value=6.3e-06  Score=57.74  Aligned_cols=146  Identities=16%  Similarity=0.217  Sum_probs=82.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCC-Ch------------------
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTA-GQ------------------   72 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~-G~------------------   72 (217)
                      ..++|++.|+||+||||++.++....-...+ ...|  +....+.-++..+-|.+.|+. |.                  
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~-kvgG--f~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~   80 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGY-KVGG--FITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG   80 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcCc-eeee--EEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence            4689999999999999999988754432222 1111  334445557777778888887 30                  


Q ss_pred             ---hhhh----hhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHH
Q 027856           73 ---ERYR----AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFA  145 (217)
Q Consensus        73 ---~~~~----~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~  145 (217)
                         +.+.    ......+..+|++|  +|---+--+. ...+...+......+.|++.++.+-+.        .-..+..
T Consensus        81 V~v~~le~i~~~al~rA~~~aDvII--IDEIGpMElk-s~~f~~~ve~vl~~~kpliatlHrrsr--------~P~v~~i  149 (179)
T COG1618          81 VNVEGLEEIAIPALRRALEEADVII--IDEIGPMELK-SKKFREAVEEVLKSGKPLIATLHRRSR--------HPLVQRI  149 (179)
T ss_pred             eeHHHHHHHhHHHHHHHhhcCCEEE--Eecccchhhc-cHHHHHHHHHHhcCCCcEEEEEecccC--------ChHHHHh
Confidence               1111    12233345567554  4433332111 245666666666678998888776542        1122233


Q ss_pred             HHcCCcEEEEecCCCCCHHHHHHHHHHHH
Q 027856          146 ERENTFFMETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       146 ~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  174 (217)
                      ...+..++.   .+.+|-+.++..+++.+
T Consensus       150 k~~~~v~v~---lt~~NR~~i~~~Il~~L  175 (179)
T COG1618         150 KKLGGVYVF---LTPENRNRILNEILSVL  175 (179)
T ss_pred             hhcCCEEEE---EccchhhHHHHHHHHHh
Confidence            444433333   45555567777777654

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.65  E-value=1.5e-07  Score=79.91  Aligned_cols=119  Identities=20%  Similarity=0.224  Sum_probs=83.8

Q ss_pred             CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCC--------------CCcccceeEeEEEEEEECCeEEEEEEEeCCChh
Q 027856            8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSL--------------ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE   73 (217)
Q Consensus         8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   73 (217)
                      .+....-+|+++.+-..|||||+..|+...--.              ....+.|++....-+..-.+.+.++++|+||+.
T Consensus         4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghv   83 (887)
T KOG0467|consen    4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHV   83 (887)
T ss_pred             CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCcc
Confidence            355677899999999999999999988643210              111233333333333333455789999999999


Q ss_pred             hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 027856           74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL  130 (217)
Q Consensus        74 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~  130 (217)
                      .|.+.......-+|++++.+|+...-..+...-++..+.    .+...++|+||+|.
T Consensus        84 df~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~----~~~~~~lvinkidr  136 (887)
T KOG0467|consen   84 DFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI----EGLKPILVINKIDR  136 (887)
T ss_pred             chhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH----ccCceEEEEehhhh
Confidence            999988888899999999999987654443323333332    36667899999993

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.65  E-value=5.8e-08  Score=77.10  Aligned_cols=57  Identities=26%  Similarity=0.371  Sum_probs=46.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ   72 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   72 (217)
                      ..++++++|.||+|||||||+|.+...... .+..|.+.....+..+..   +.++||||-
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~-s~~PG~Tk~~q~i~~~~~---i~LlDtPGi  187 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKT-SNRPGTTKGIQWIKLDDG---IYLLDTPGI  187 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHHHhcccceee-CCCCceecceEEEEcCCC---eEEecCCCc
Confidence            357899999999999999999999987433 355577777777777663   789999993

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.62  E-value=2.3e-08  Score=76.60  Aligned_cols=160  Identities=21%  Similarity=0.213  Sum_probs=100.5

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcC---CCCCcc--cceeEeEEEEE-EEC-------------------------
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEF---SLESKS--TIGVEFATRSI-RCD-------------------------   58 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~---~~~~~~--~~~~~~~~~~~-~~~-------------------------   58 (217)
                      .+.+++|+-+|+--.||||+++++.+-+.   ..+-..  |+...+....+ .++                         
T Consensus        35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~  114 (466)
T KOG0466|consen   35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR  114 (466)
T ss_pred             heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence            45689999999999999999999887321   110000  10000000000 000                         


Q ss_pred             -Ce------EEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCC----hhhHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 027856           59 -DK------IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR----HVTFENVERWLKELRDHTDSNIVIMLVGNK  127 (217)
Q Consensus        59 -~~------~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK  127 (217)
                       +.      -..+.|+|+||++.+-....+-..-.|++++++..+.    |++.+++..  -++..    =+.++++-||
T Consensus       115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--veiM~----LkhiiilQNK  188 (466)
T KOG0466|consen  115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEIMK----LKHIIILQNK  188 (466)
T ss_pred             CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHHhh----hceEEEEech
Confidence             00      0367899999998877666555555688888887764    445444422  11111    2347888999


Q ss_pred             CCCCCccCC--CHHHHHHHHHH---cCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027856          128 ADLRHLRAV--STEDATAFAER---ENTFFMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       128 ~D~~~~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  175 (217)
                      +|+..+...  ..+.+..|...   .+++++++||.-..|++.+.+.|++++.
T Consensus       189 iDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP  241 (466)
T KOG0466|consen  189 IDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP  241 (466)
T ss_pred             hhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence            999764322  23445555554   4678999999999999999888887664

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.60  E-value=6.4e-08  Score=68.55  Aligned_cols=59  Identities=25%  Similarity=0.297  Sum_probs=33.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCC------CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSL------ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY   75 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   75 (217)
                      -.++++|++|||||||+|.|++.....      .......++.....+.....   ..++||||...+
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~  100 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSF  100 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT-
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCcc
Confidence            357999999999999999999973211      11111112222333444332   369999995544

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.60  E-value=1.4e-07  Score=67.11  Aligned_cols=56  Identities=21%  Similarity=0.264  Sum_probs=38.5

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCC
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAG   71 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   71 (217)
                      ....+|+++|.+|+|||||+|++++..... ...+..+  ........+   ..+.++||||
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t--~~~~~~~~~---~~~~liDtPG  154 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTT--TSQQEVKLD---NKIKLLDTPG  154 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcc--cceEEEEec---CCEEEEECCC
Confidence            356889999999999999999999876422 2222222  223333333   2578999998

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01858 NGP_1 NGP-1

Probab=98.59  E-value=2.6e-07  Score=65.87  Aligned_cols=91  Identities=11%  Similarity=0.029  Sum_probs=57.7

Q ss_pred             hhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCC
Q 027856           82 YYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESM  161 (217)
Q Consensus        82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  161 (217)
                      .+..+|++++|+|++++.... ...+...+... ..+.|+++|+||+|+...... ......+........+.+||+.+.
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~~~   81 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTR-CKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINNPF   81 (157)
T ss_pred             hhhhCCEEEEEEECCCCcccc-CHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccccc
Confidence            467899999999999874321 12233333322 235899999999999642211 111222222222335789999999


Q ss_pred             CHHHHHHHHHHHHH
Q 027856          162 NVENAFTEVLTQIY  175 (217)
Q Consensus       162 ~i~~~~~~i~~~~~  175 (217)
                      |++++++.+.+.+.
T Consensus        82 ~~~~L~~~l~~~~~   95 (157)
T cd01858          82 GKGSLIQLLRQFSK   95 (157)
T ss_pred             cHHHHHHHHHHHHh
Confidence            99999999876543

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.52  E-value=8.2e-07  Score=63.20  Aligned_cols=86  Identities=17%  Similarity=0.059  Sum_probs=56.1

Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856           87 VGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA  166 (217)
Q Consensus        87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  166 (217)
                      |++++|+|+.++.+...  .++.. ......++|+++|+||+|+.....+ .+....+....+..++.+||+++.|++++
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L   76 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK   76 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence            68999999988765432  23321 1112237899999999998542111 11112232233556899999999999999


Q ss_pred             HHHHHHHHHH
Q 027856          167 FTEVLTQIYR  176 (217)
Q Consensus       167 ~~~i~~~~~~  176 (217)
                      ++.+.+...+
T Consensus        77 ~~~i~~~~~~   86 (155)
T cd01849          77 ESAFTKQTNS   86 (155)
T ss_pred             HHHHHHHhHH
Confidence            9999876543

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01856 YlqF YlqF

Probab=98.51  E-value=6.8e-07  Score=64.68  Aligned_cols=99  Identities=17%  Similarity=0.072  Sum_probs=64.4

Q ss_pred             CCChh-hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH
Q 027856           69 TAGQE-RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAER  147 (217)
Q Consensus        69 t~G~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~  147 (217)
                      .||+. +........+.++|++++|+|++++..... ..+...+     .+.|+++|+||+|+.+...  .....++...
T Consensus         2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~~-----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~   73 (171)
T cd01856           2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRN-PLLEKIL-----GNKPRIIVLNKADLADPKK--TKKWLKYFES   73 (171)
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCC-hhhHhHh-----cCCCEEEEEehhhcCChHH--HHHHHHHHHh
Confidence            35532 333445667889999999999987654221 1122222     2578999999999854211  1112122333


Q ss_pred             cCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027856          148 ENTFFMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       148 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  175 (217)
                      .+..++.+||+++.|++++.+.+...+.
T Consensus        74 ~~~~vi~iSa~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          74 KGEKVLFVNAKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence            3456899999999999999999887764

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.49  E-value=2.2e-07  Score=75.84  Aligned_cols=56  Identities=23%  Similarity=0.229  Sum_probs=46.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ   72 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   72 (217)
                      .+.|++||.|||||||+||+|.|.....+. .|.|.+....++.+..   .+.|.|+||.
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS-~TPGkTKHFQTi~ls~---~v~LCDCPGL  369 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSVS-STPGKTKHFQTIFLSP---SVCLCDCPGL  369 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeeee-cCCCCcceeEEEEcCC---CceecCCCCc
Confidence            699999999999999999999999876555 6777777777776666   6789999993

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.49  E-value=1.2e-06  Score=68.36  Aligned_cols=174  Identities=18%  Similarity=0.145  Sum_probs=104.9

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCc----------C---CCC-CcccceeEeEEEEEEECCeEEEEEEEeCCChhhh
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNE----------F---SLE-SKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY   75 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~----------~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   75 (217)
                      ..+..+|+-+|+-..|||||-.+++.-.          +   +.. -....|++.....+.|.-....+-=.|+||+..|
T Consensus        51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY  130 (449)
T KOG0460|consen   51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY  130 (449)
T ss_pred             CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence            3456899999999999999988766421          0   000 0113344444444544444456678999999999


Q ss_pred             hhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC---CCHHHHHHHHHHcC---
Q 027856           76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA---VSTEDATAFAEREN---  149 (217)
Q Consensus        76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~---  149 (217)
                      -.....-..+.|+.|+|+.+.|..-.+.-+.++- .++ .+ -..+++.+||.|+.+..+   .-.-|++++...++   
T Consensus       131 IKNMItGaaqMDGaILVVaatDG~MPQTrEHlLL-ArQ-VG-V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G  207 (449)
T KOG0460|consen  131 IKNMITGAAQMDGAILVVAATDGPMPQTREHLLL-ARQ-VG-VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG  207 (449)
T ss_pred             HHHhhcCccccCceEEEEEcCCCCCcchHHHHHH-HHH-cC-CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCC
Confidence            8887777788899999999998654333222211 111 11 234778889999985332   22234455555554   


Q ss_pred             --CcEEEEecC---CCCCH---HHHHHHHHHHHHHHHhhhhhccC
Q 027856          150 --TFFMETSAL---ESMNV---ENAFTEVLTQIYRVVSRKALEIG  186 (217)
Q Consensus       150 --~~~~~~Sa~---~~~~i---~~~~~~i~~~~~~~~~~~~~~~~  186 (217)
                        .+++.-||+   .|.+-   .+....+++++-.+....+..++
T Consensus       208 d~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~~~  252 (449)
T KOG0460|consen  208 DNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERDLD  252 (449)
T ss_pred             CCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcccccC
Confidence              458887765   34321   23344555555554555555544

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.49  E-value=4.4e-06  Score=63.09  Aligned_cols=86  Identities=16%  Similarity=0.012  Sum_probs=52.7

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhC--cCCCCCcccceeEeEEEEEEEC---CeEEEEEEEeCCChhhh------hhhh
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRN--EFSLESKSTIGVEFATRSIRCD---DKIVKAQIWDTAGQERY------RAIT   79 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~Dt~G~~~~------~~~~   79 (217)
                      .+..-|+|+|++++|||+|+|+|++.  .+...... ..++.........   +....+.++||+|....      ....
T Consensus         5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~-~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~   83 (224)
T cd01851           5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTS-QQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDAR   83 (224)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCC-CCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhH
Confidence            45567999999999999999999998  65443321 1111112222111   23468999999994322      1112


Q ss_pred             hhhhc--CCcEEEEEEECCC
Q 027856           80 SAYYR--GAVGALLVYDVTR   97 (217)
Q Consensus        80 ~~~~~--~~d~ii~v~d~~~   97 (217)
                      ...+.  -++++||..+...
T Consensus        84 ~~~l~~llss~~i~n~~~~~  103 (224)
T cd01851          84 LFALATLLSSVLIYNSWETI  103 (224)
T ss_pred             HHHHHHHHhCEEEEeccCcc
Confidence            22233  3788888877654

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.48  E-value=2.5e-06  Score=64.28  Aligned_cols=116  Identities=18%  Similarity=0.225  Sum_probs=75.6

Q ss_pred             EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChh-------hHHHHHHHHHHHHh----hcCCCCcEEEEEeCCCC
Q 027856           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV-------TFENVERWLKELRD----HTDSNIVIMLVGNKADL  130 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-------s~~~~~~~~~~l~~----~~~~~~p~ivv~nK~D~  130 (217)
                      +.++++|.+|+..-+..|.-++..+.++|||+..+...       +-+.++.-+..+..    ..-..+.+|+.+||.|+
T Consensus       202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDl  281 (379)
T KOG0099|consen  202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL  281 (379)
T ss_pred             cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHH
Confidence            57899999999999999999999999999999988632       11222222222211    11236778999999998


Q ss_pred             CCcc----------------------------CCC--HHHHHHHHHH-------------cCCcEEEEecCCCCCHHHHH
Q 027856          131 RHLR----------------------------AVS--TEDATAFAER-------------ENTFFMETSALESMNVENAF  167 (217)
Q Consensus       131 ~~~~----------------------------~~~--~~~~~~~~~~-------------~~~~~~~~Sa~~~~~i~~~~  167 (217)
                      ..++                            ..+  .-.++.+.+.             +-+.+..+.|.+-++|+.+|
T Consensus       282 laeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrrVF  361 (379)
T KOG0099|consen  282 LAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVF  361 (379)
T ss_pred             HHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHHHH
Confidence            4210                            000  0111112111             23557788999999999999


Q ss_pred             HHHHHHHHHH
Q 027856          168 TEVLTQIYRV  177 (217)
Q Consensus       168 ~~i~~~~~~~  177 (217)
                      +..-+-++..
T Consensus       362 nDcrdiIqr~  371 (379)
T KOG0099|consen  362 NDCRDIIQRM  371 (379)
T ss_pred             HHHHHHHHHH
Confidence            9877666543

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.46  E-value=1.4e-07  Score=75.17  Aligned_cols=119  Identities=18%  Similarity=0.218  Sum_probs=88.9

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhC--------cCCCCC--------cccceeEeEEEEEEECCeEEEEEEEeCCChh
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRN--------EFSLES--------KSTIGVEFATRSIRCDDKIVKAQIWDTAGQE   73 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~--------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   73 (217)
                      ....-+|+++.+-.+||||.-.|++--        ......        ....|++....-+.++++.+.+.++||||+.
T Consensus        34 ~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghv  113 (753)
T KOG0464|consen   34 IAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHV  113 (753)
T ss_pred             hhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcc
Confidence            345678999999999999999987642        111111        1134555666666777777899999999999


Q ss_pred             hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856           74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        74 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  132 (217)
                      .|+--.+.+++-.|+++.|+|++..-..+.+..|+..    ...++|-..++||+|...
T Consensus       114 df~leverclrvldgavav~dasagve~qtltvwrqa----dk~~ip~~~finkmdk~~  168 (753)
T KOG0464|consen  114 DFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA----DKFKIPAHCFINKMDKLA  168 (753)
T ss_pred             eEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc----cccCCchhhhhhhhhhhh
Confidence            9998888999999999999999987655545555544    334789899999999743

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.46  E-value=2.9e-06  Score=67.22  Aligned_cols=144  Identities=17%  Similarity=0.171  Sum_probs=79.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCC------cc---------------cceeEeEEEEEEE-------------
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLES------KS---------------TIGVEFATRSIRC-------------   57 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~------~~---------------~~~~~~~~~~~~~-------------   57 (217)
                      ..--|+++|++|+||||++..|.+.......      ..               -.+..+.......             
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~  192 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA  192 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            3567899999999999999987763211100      00               0111111110000             


Q ss_pred             CCeEEEEEEEeCCChhh--------hhhhhhh----hhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEE
Q 027856           58 DDKIVKAQIWDTAGQER--------YRAITSA----YYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVG  125 (217)
Q Consensus        58 ~~~~~~~~l~Dt~G~~~--------~~~~~~~----~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~  125 (217)
                      ....+.+.++||||...        .......    .-...+..++|+|++...  +.+... ......   -.+.-+|+
T Consensus       193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a-~~f~~~---~~~~giIl  266 (318)
T PRK10416        193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQA-KAFHEA---VGLTGIIL  266 (318)
T ss_pred             HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHHH-HHHHhh---CCCCEEEE
Confidence            11236899999999432        2221111    113467889999998543  222221 111111   12346899


Q ss_pred             eCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Q 027856          126 NKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAF  167 (217)
Q Consensus       126 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  167 (217)
                      ||.|....    .-.+.......+.++..++  +|++++++-
T Consensus       267 TKlD~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~  302 (318)
T PRK10416        267 TKLDGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDLQ  302 (318)
T ss_pred             ECCCCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhCc
Confidence            99995432    2234555666788888888  667776653

>PRK12288 GTPase RsgA; Reviewed

Probab=98.44  E-value=4.9e-07  Score=72.41  Aligned_cols=58  Identities=22%  Similarity=0.327  Sum_probs=35.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCcCCCCC------cccceeEeEEEEEEECCeEEEEEEEeCCChhhhh
Q 027856           16 VVLIGDSGVGKSNLLSRFTRNEFSLES------KSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYR   76 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   76 (217)
                      ++++|.+|+|||||||+|++.......      .....++.....+.+.+.   ..++||||..++.
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~  271 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG  271 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence            789999999999999999987542211      111112222333344332   2499999965543

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.42  E-value=1.9e-06  Score=65.40  Aligned_cols=116  Identities=26%  Similarity=0.400  Sum_probs=69.8

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcc----cceeEeEEEEEEECCeEEEEEEEeCCCh-------hhhh---
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKS----TIGVEFATRSIRCDDKIVKAQIWDTAGQ-------ERYR---   76 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-------~~~~---   76 (217)
                      -..++|+-+|.+|.||||||..|++..+.....+    ..........+.-.+..++++++||.|.       +.|.   
T Consensus        40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iV  119 (406)
T KOG3859|consen   40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIV  119 (406)
T ss_pred             CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHH
Confidence            4579999999999999999999999888654433    2222222222333566789999999991       1110   


Q ss_pred             ----hhhhh-------------hh--cCCcEEEEEEECCChhhHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCC
Q 027856           77 ----AITSA-------------YY--RGAVGALLVYDVTRHVTFENVER-WLKELRDHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        77 ----~~~~~-------------~~--~~~d~ii~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~ivv~nK~D~~  131 (217)
                          +..+.             .+  ..+++.+|.+..+... +..+.- .+..+.    ....+|.|+-|.|..
T Consensus       120 dyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~-LKslDLvtmk~Ld----skVNIIPvIAKaDti  189 (406)
T KOG3859|consen  120 DYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHS-LKSLDLVTMKKLD----SKVNIIPVIAKADTI  189 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcc-hhHHHHHHHHHHh----hhhhhHHHHHHhhhh
Confidence                11111             12  3557788888775432 322221 233333    255567778888854

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.41  E-value=1.1e-06  Score=61.57  Aligned_cols=77  Identities=21%  Similarity=0.217  Sum_probs=52.5

Q ss_pred             hhhhcCCcEEEEEEECCChhhHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEec
Q 027856           80 SAYYRGAVGALLVYDVTRHVTFE--NVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSA  157 (217)
Q Consensus        80 ~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  157 (217)
                      ...+..+|++++|+|+.++.+..  .+..++...   . .++|+++|+||+|+.....  ..+..+.....+..++++||
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~-~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa   79 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D-PRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSA   79 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c-CCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEe
Confidence            34568899999999998876543  233333322   1 4789999999999864221  23344555566778999999


Q ss_pred             CCCCC
Q 027856          158 LESMN  162 (217)
Q Consensus       158 ~~~~~  162 (217)
                      .++.+
T Consensus        80 ~~~~~   84 (141)
T cd01857          80 LKENA   84 (141)
T ss_pred             cCCCc
Confidence            98754

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.41  E-value=2.5e-06  Score=66.52  Aligned_cols=102  Identities=16%  Similarity=0.053  Sum_probs=67.0

Q ss_pred             CCChh-hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH
Q 027856           69 TAGQE-RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAER  147 (217)
Q Consensus        69 t~G~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~  147 (217)
                      .||+. .........+..+|++++|+|+..+.+... ..+...+     .+.|+++|+||+|+.+...  .....+....
T Consensus         4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~-~~i~~~l-----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~   75 (276)
T TIGR03596         4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN-PMIDEIR-----GNKPRLIVLNKADLADPAV--TKQWLKYFEE   75 (276)
T ss_pred             ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC-hhHHHHH-----CCCCEEEEEEccccCCHHH--HHHHHHHHHH
Confidence            36653 223445667889999999999987754322 1122222     2679999999999864211  1111222333


Q ss_pred             cCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 027856          148 ENTFFMETSALESMNVENAFTEVLTQIYRVV  178 (217)
Q Consensus       148 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  178 (217)
                      .+..++.+||.++.|+.++.+.+.+.+.+..
T Consensus        76 ~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~~  106 (276)
T TIGR03596        76 KGIKALAINAKKGKGVKKIIKAAKKLLKEKN  106 (276)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHHHHhh
Confidence            4567899999999999999999887775543

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.41  E-value=2.1e-05  Score=63.50  Aligned_cols=144  Identities=17%  Similarity=0.217  Sum_probs=86.5

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcC-----------------CCC-Ccccc-e-----eEeEEEEEEE-CCeEEEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEF-----------------SLE-SKSTI-G-----VEFATRSIRC-DDKIVKAQ   65 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~-----------------~~~-~~~~~-~-----~~~~~~~~~~-~~~~~~~~   65 (217)
                      ...+=|+|||+--+||||||+||.....                 +.+ ...|+ +     .......+.+ ++-.+++.
T Consensus        15 ~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVR   94 (492)
T PF09547_consen   15 GGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVR   94 (492)
T ss_pred             CCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEE
Confidence            3457789999999999999999986422                 111 11111 0     1111222333 46678999


Q ss_pred             EEeCCCh-------------h------hh------hhhhh----hhh--cCCcEEEEEEECCC----hhhHHHH-HHHHH
Q 027856           66 IWDTAGQ-------------E------RY------RAITS----AYY--RGAVGALLVYDVTR----HVTFENV-ERWLK  109 (217)
Q Consensus        66 l~Dt~G~-------------~------~~------~~~~~----~~~--~~~d~ii~v~d~~~----~~s~~~~-~~~~~  109 (217)
                      ++|+.|-             +      +|      ....+    ..+  +..=++++.-|.+=    ++.+..+ +..+.
T Consensus        95 LiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~  174 (492)
T PF09547_consen   95 LIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIE  174 (492)
T ss_pred             EEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHH
Confidence            9999981             0      11      10000    011  12235666666542    3344444 45777


Q ss_pred             HHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCC
Q 027856          110 ELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALE  159 (217)
Q Consensus       110 ~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  159 (217)
                      +|...   ++|+++++|-.+...  ....+...++..+++++++++++..
T Consensus       175 ELk~i---gKPFvillNs~~P~s--~et~~L~~eL~ekY~vpVlpvnc~~  219 (492)
T PF09547_consen  175 ELKEI---GKPFVILLNSTKPYS--EETQELAEELEEKYDVPVLPVNCEQ  219 (492)
T ss_pred             HHHHh---CCCEEEEEeCCCCCC--HHHHHHHHHHHHHhCCcEEEeehHH
Confidence            77766   899999999887543  3345666777888899988887765

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.38  E-value=2.8e-06  Score=60.60  Aligned_cols=63  Identities=13%  Similarity=0.095  Sum_probs=37.2

Q ss_pred             EEEEEEeCCChhhhhhhhhh--------hhcCCcEEEEEEECCChhhH-HHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 027856           62 VKAQIWDTAGQERYRAITSA--------YYRGAVGALLVYDVTRHVTF-ENVERWLKELRDHTDSNIVIMLVGNKADL  130 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~--------~~~~~d~ii~v~d~~~~~s~-~~~~~~~~~l~~~~~~~~p~ivv~nK~D~  130 (217)
                      .+..++|++|...-......        ..-..+.+++++|+.+.... .....+..++....      ++|+||+|+
T Consensus        87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad------~ivlnk~dl  158 (158)
T cd03112          87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFAD------RILLNKTDL  158 (158)
T ss_pred             CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCC------EEEEecccC
Confidence            57789999995322222211        23357889999998654321 12233445554332      679999995

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.38  E-value=4.1e-06  Score=66.29  Aligned_cols=154  Identities=19%  Similarity=0.175  Sum_probs=87.3

Q ss_pred             CCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCC----------------CCcccceeEeEEEEEEE-------------
Q 027856            7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSL----------------ESKSTIGVEFATRSIRC-------------   57 (217)
Q Consensus         7 ~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~-------------   57 (217)
                      .......++|+|+|.-.+|||||+-.|+...++.                +...|........-++.             
T Consensus       127 ~~~DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~  206 (641)
T KOG0463|consen  127 TEKDFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGH  206 (641)
T ss_pred             CCccceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCC
Confidence            3445567999999999999999998776543311                11111111111111111             


Q ss_pred             --------CCeEEEEEEEeCCChhhhhhhhhhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 027856           58 --------DDKIVKAQIWDTAGQERYRAITSAYY--RGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNK  127 (217)
Q Consensus        58 --------~~~~~~~~l~Dt~G~~~~~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK  127 (217)
                              .+..-.++|+|.+|++.|....-.-+  +-.|.-++++-++...-- ....-+.....   -..|+++|.+|
T Consensus       207 ~LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiG-mTKEHLgLALa---L~VPVfvVVTK  282 (641)
T KOG0463|consen  207 NLDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIG-MTKEHLGLALA---LHVPVFVVVTK  282 (641)
T ss_pred             cccceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccccee-ccHHhhhhhhh---hcCcEEEEEEe
Confidence                    12223678999999999987654333  345777777776543211 01111111122   27899999999


Q ss_pred             CCCCCccCCCHHH---HH--------------------------HHHHHcCCcEEEEecCCCCCHHH
Q 027856          128 ADLRHLRAVSTED---AT--------------------------AFAERENTFFMETSALESMNVEN  165 (217)
Q Consensus       128 ~D~~~~~~~~~~~---~~--------------------------~~~~~~~~~~~~~Sa~~~~~i~~  165 (217)
                      +|+-... +..+-   +.                          .|..+.-+++|.+|..+|+|+.-
T Consensus       283 IDMCPAN-iLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~L  348 (641)
T KOG0463|consen  283 IDMCPAN-ILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPL  348 (641)
T ss_pred             eccCcHH-HHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHH
Confidence            9985421 11111   11                          11122336789999999999754

>PRK14974 cell division protein FtsY; Provisional

Probab=98.36  E-value=5.8e-06  Score=65.85  Aligned_cols=95  Identities=12%  Similarity=0.021  Sum_probs=54.6

Q ss_pred             EEEEEEeCCChhhhh----hhhhhh--hcCCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCcc
Q 027856           62 VKAQIWDTAGQERYR----AITSAY--YRGAVGALLVYDVTRHVT-FENVERWLKELRDHTDSNIVIMLVGNKADLRHLR  134 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~----~~~~~~--~~~~d~ii~v~d~~~~~s-~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~  134 (217)
                      +.+.|+||+|.....    .....+  ..+.|.+++|+|+..... .+.+..+...+      + .--+|+||.|.... 
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~------~-~~giIlTKlD~~~~-  294 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAV------G-IDGVILTKVDADAK-  294 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcC------C-CCEEEEeeecCCCC-
Confidence            478999999953211    111111  235788999999866432 22122222211      2 23688999997542 


Q ss_pred             CCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 027856          135 AVSTEDATAFAERENTFFMETSALESMNVENAFTE  169 (217)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  169 (217)
                         .-.+...+...+.++.+++  +|.+++++...
T Consensus       295 ---~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~  324 (336)
T PRK14974        295 ---GGAALSIAYVIGKPILFLG--VGQGYDDLIPF  324 (336)
T ss_pred             ---ccHHHHHHHHHCcCEEEEe--CCCChhhcccC
Confidence               2224445556688888877  67888776443

>PRK12289 GTPase RsgA; Reviewed

Probab=98.36  E-value=7.3e-07  Score=71.47  Aligned_cols=55  Identities=24%  Similarity=0.200  Sum_probs=34.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCcCCCCC------cccceeEeEEEEEEECCeEEEEEEEeCCChh
Q 027856           16 VVLIGDSGVGKSNLLSRFTRNEFSLES------KSTIGVEFATRSIRCDDKIVKAQIWDTAGQE   73 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   73 (217)
                      ++++|.+|+|||||||+|++.......      .....++.....+...+..   .|+||||..
T Consensus       175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~  235 (352)
T PRK12289        175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFN  235 (352)
T ss_pred             EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcc
Confidence            799999999999999999976432211      1101122333334343322   699999954

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.36  E-value=9.7e-07  Score=71.33  Aligned_cols=57  Identities=25%  Similarity=0.406  Sum_probs=38.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCC----CCCcccceeEeEEEEEEECCeEEEEEEEeCCChh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFS----LESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE   73 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   73 (217)
                      .+++++|.+|+|||||+|+|++....    .......+++.....+..++   .+.++||||..
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~  215 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGII  215 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCC
Confidence            48999999999999999999985421    11222334444455555433   34799999943

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK13796 GTPase YqeH; Provisional

Probab=98.35  E-value=7.6e-07  Score=72.04  Aligned_cols=56  Identities=27%  Similarity=0.414  Sum_probs=38.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcC----CCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEF----SLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ   72 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   72 (217)
                      .++.++|.+|+|||||||+|++...    ........|++.....+..++.   ..++||||.
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi  220 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGI  220 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCc
Confidence            4799999999999999999996531    1111233344455555555443   379999995

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.34  E-value=7.9e-07  Score=68.77  Aligned_cols=58  Identities=26%  Similarity=0.193  Sum_probs=37.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcC------CCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhh
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEF------SLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY   75 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   75 (217)
                      -.+++|++|+|||||+|+|.+...      +........++.....+.+.+..   .++||||..++
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~  229 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSL  229 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCcc
Confidence            468999999999999999997422      22222222333445555554322   49999996544

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.34  E-value=1e-06  Score=67.44  Aligned_cols=57  Identities=23%  Similarity=0.179  Sum_probs=35.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCC------CcccceeEeEEEEEEECCeEEEEEEEeCCChhh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLE------SKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER   74 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   74 (217)
                      -.++++|.+|+|||||+|+|++......      ......++.....+...+    ..++||||...
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~  183 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNE  183 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCccc
Confidence            3679999999999999999998643221      111111222233333333    26999999543

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK13796 GTPase YqeH; Provisional

Probab=98.32  E-value=6.9e-06  Score=66.53  Aligned_cols=94  Identities=18%  Similarity=0.239  Sum_probs=61.8

Q ss_pred             hhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHH----HHHc
Q 027856           73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAF----AERE  148 (217)
Q Consensus        73 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~~~~  148 (217)
                      +.+.............+++|+|+.+..     ..|...+..... +.|+++|+||+|+... ....+++..+    +...
T Consensus        57 ~~~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~  129 (365)
T PRK13796         57 DDFLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKEL  129 (365)
T ss_pred             HHHHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhc
Confidence            345554444433334899999997743     234444444332 6789999999999652 3333333333    4455


Q ss_pred             CC---cEEEEecCCCCCHHHHHHHHHHH
Q 027856          149 NT---FFMETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus       149 ~~---~~~~~Sa~~~~~i~~~~~~i~~~  173 (217)
                      ++   .++.+||+++.|++++++.|.+.
T Consensus       130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        130 GLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            65   58999999999999999998654

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.31  E-value=1e-05  Score=62.83  Aligned_cols=95  Identities=15%  Similarity=0.042  Sum_probs=54.7

Q ss_pred             EEEEEEEeCCChhhhhhh--------hhh----hhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 027856           61 IVKAQIWDTAGQERYRAI--------TSA----YYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKA  128 (217)
Q Consensus        61 ~~~~~l~Dt~G~~~~~~~--------~~~----~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~  128 (217)
                      .+.+.++||||.......        ...    .-...|.+++|+|++...  +.+... ..+.+..   .+.-+|+||.
T Consensus       154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~~~-~~f~~~~---~~~g~IlTKl  227 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALEQA-KVFNEAV---GLTGIILTKL  227 (272)
T ss_pred             CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHHHH-HHHHhhC---CCCEEEEEcc
Confidence            368899999995432211        111    112478999999997532  222221 2222211   1346889999


Q ss_pred             CCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Q 027856          129 DLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAF  167 (217)
Q Consensus       129 D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  167 (217)
                      |....    .-.+.......+.++.+++  +|++++++-
T Consensus       228 De~~~----~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~  260 (272)
T TIGR00064       228 DGTAK----GGIILSIAYELKLPIKFIG--VGEKIDDLA  260 (272)
T ss_pred             CCCCC----ccHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence            97542    2334455556678888877  666666653

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.31  E-value=4.6e-06  Score=75.42  Aligned_cols=156  Identities=23%  Similarity=0.229  Sum_probs=83.2

Q ss_pred             EEEcCCCCCHHHHHHHHhhCcCCC--CCccc--ceeEeEEEEEEECCeEEEEEEEeCCC----h----hhhhhhhhhh--
Q 027856           17 VLIGDSGVGKSNLLSRFTRNEFSL--ESKST--IGVEFATRSIRCDDKIVKAQIWDTAG----Q----ERYRAITSAY--   82 (217)
Q Consensus        17 ~v~G~~~~GKSsli~~l~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~l~Dt~G----~----~~~~~~~~~~--   82 (217)
                      +|+|++|+||||++.. .+..|+.  .....  .+.........+.+   ...++||.|    +    +.....|..+  
T Consensus       129 ~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~fL~  204 (1188)
T COG3523         129 MVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPGTRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGFLG  204 (1188)
T ss_pred             EEecCCCCCcchHHhc-ccccCcchhhhccccccCCCCcccCccccc---ceEEEcCCcceecccCcchhhHHHHHHHHH
Confidence            7999999999999864 3332221  11110  00000111222233   557999999    1    2233445544  


Q ss_pred             -------hcCCcEEEEEEECCChhh---------HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHH--HH
Q 027856           83 -------YRGAVGALLVYDVTRHVT---------FENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAT--AF  144 (217)
Q Consensus        83 -------~~~~d~ii~v~d~~~~~s---------~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~--~~  144 (217)
                             .+..|+||+.+|+++.-+         ...++.-+.++.+......|+.+++||.|+....+.-.....  +-
T Consensus       205 lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~GF~efF~~l~~~~r  284 (1188)
T COG3523         205 LLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPGFEEFFGSLNKEER  284 (1188)
T ss_pred             HHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccccHHHHHhccCHHHH
Confidence                   257799999999976322         122334455666666678999999999998653211000000  11


Q ss_pred             HHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027856          145 AERENTFFMETSALESMNVENAFTEVLTQIYRV  177 (217)
Q Consensus       145 ~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  177 (217)
                      ..-+| -.|...+....+....+..-.+.+.++
T Consensus       285 ~qvwG-~tf~~~~~~~~~~~~~~~~e~~~L~~r  316 (1188)
T COG3523         285 EQVWG-VTFPLDARRNANLAAELEQEFRLLLDR  316 (1188)
T ss_pred             hhhce-eccccccccccchHHHHHHHHHHHHHH
Confidence            11122 245666666645555544444444433

>PRK01889 GTPase RsgA; Reviewed

Probab=98.29  E-value=4e-06  Score=67.66  Aligned_cols=83  Identities=16%  Similarity=0.157  Sum_probs=59.9

Q ss_pred             hcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHH-HcCCcEEEEecCCCC
Q 027856           83 YRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAE-RENTFFMETSALESM  161 (217)
Q Consensus        83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~  161 (217)
                      ..++|.+++|+++........++.++..+...   +++.++|+||+|+.+..   .+....+.. ..+.+++.+|++++.
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g~  183 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDGE  183 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCCc
Confidence            57899999999997555555666676666554   67788999999997531   111222222 346789999999999


Q ss_pred             CHHHHHHHHH
Q 027856          162 NVENAFTEVL  171 (217)
Q Consensus       162 ~i~~~~~~i~  171 (217)
                      |++++..++-
T Consensus       184 gl~~L~~~L~  193 (356)
T PRK01889        184 GLDVLAAWLS  193 (356)
T ss_pred             cHHHHHHHhh
Confidence            9999888763

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.28  E-value=7.2e-06  Score=67.13  Aligned_cols=114  Identities=17%  Similarity=0.124  Sum_probs=61.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhh------CcCCCCCc---------------ccceeEeEEEEEEEC-------------
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTR------NEFSLESK---------------STIGVEFATRSIRCD-------------   58 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~------~~~~~~~~---------------~~~~~~~~~~~~~~~-------------   58 (217)
                      +.-|+++|.+|+||||++..|..      ........               .-.+..+.......+             
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~  179 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK  179 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence            46789999999999999998763      11110000               011111111110001             


Q ss_pred             CeEEEEEEEeCCChhhhh----hhhhhh--hcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856           59 DKIVKAQIWDTAGQERYR----AITSAY--YRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        59 ~~~~~~~l~Dt~G~~~~~----~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  132 (217)
                      ...+.+.|+||+|.....    .....+  ....+-+++|+|+.....-.   .....+...   -.+.-+|+||.|...
T Consensus       180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~---~~a~~F~~~---~~~~g~IlTKlD~~a  253 (429)
T TIGR01425       180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAE---AQAKAFKDS---VDVGSVIITKLDGHA  253 (429)
T ss_pred             hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHH---HHHHHHHhc---cCCcEEEEECccCCC
Confidence            124688999999943221    111111  23567899999987553322   122222221   234578899999743

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.26  E-value=6.4e-06  Score=64.63  Aligned_cols=101  Identities=16%  Similarity=0.122  Sum_probs=67.0

Q ss_pred             CCChhh-hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH
Q 027856           69 TAGQER-YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAER  147 (217)
Q Consensus        69 t~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~  147 (217)
                      .||+.. ........+..+|++++|+|+..+.+...  .++..+.    .+.|+++|+||+|+.+...  .+...++...
T Consensus         7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~   78 (287)
T PRK09563          7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPEV--TKKWIEYFEE   78 (287)
T ss_pred             cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence            567542 23345667789999999999987754322  1222222    1689999999999864211  1122222334


Q ss_pred             cCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027856          148 ENTFFMETSALESMNVENAFTEVLTQIYRV  177 (217)
Q Consensus       148 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  177 (217)
                      .+..++.+|+.++.|++++.+.+...+.+.
T Consensus        79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~  108 (287)
T PRK09563         79 QGIKALAINAKKGQGVKKILKAAKKLLKEK  108 (287)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            466789999999999999999888776554

>KOG2484 consensus GTPase [General function prediction only]

Probab=98.25  E-value=1.2e-06  Score=69.59  Aligned_cols=66  Identities=24%  Similarity=0.432  Sum_probs=51.9

Q ss_pred             CCCCCCCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCC
Q 027856            2 GAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAG   71 (217)
Q Consensus         2 ~~~~~~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   71 (217)
                      +++.+...-...++++|+|.|++||||+||+|......... .+.|.+..-..+..+.   .+.|.|.||
T Consensus       241 gny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg-~~pGvT~smqeV~Ldk---~i~llDsPg  306 (435)
T KOG2484|consen  241 GNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVG-NVPGVTRSMQEVKLDK---KIRLLDSPG  306 (435)
T ss_pred             cCcccccccCcceEeeeecCCCCChhHHHHHHHHhccccCC-CCccchhhhhheeccC---CceeccCCc
Confidence            45566666778899999999999999999999998876555 5556666555655554   778999999

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.24  E-value=2.5e-05  Score=63.00  Aligned_cols=142  Identities=14%  Similarity=0.076  Sum_probs=71.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCC-C--CcccceeEeE------------------EEEEEE---------CCeEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSL-E--SKSTIGVEFA------------------TRSIRC---------DDKIV   62 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~-~--~~~~~~~~~~------------------~~~~~~---------~~~~~   62 (217)
                      .-.++++|++|+||||++..|....... .  .....+.+.+                  ......         .-...
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~  216 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK  216 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence            3478899999999999999987642211 0  0000011110                  000000         01124


Q ss_pred             EEEEEeCCChhhhhh----hhhhh--hcCCcEEEEEEECCCh-hhHHHHHHHHHHHHhh-cCC-CCcEEEEEeCCCCCCc
Q 027856           63 KAQIWDTAGQERYRA----ITSAY--YRGAVGALLVYDVTRH-VTFENVERWLKELRDH-TDS-NIVIMLVGNKADLRHL  133 (217)
Q Consensus        63 ~~~l~Dt~G~~~~~~----~~~~~--~~~~d~ii~v~d~~~~-~s~~~~~~~~~~l~~~-~~~-~~p~ivv~nK~D~~~~  133 (217)
                      .+.++||+|......    ....+  .....-.++|++++.. .....+-.-+...... ... ..+--+|+||.|... 
T Consensus       217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~-  295 (374)
T PRK14722        217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS-  295 (374)
T ss_pred             CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC-
Confidence            889999999542221    11111  1223456788887654 3333332222222110 000 012357789999644 


Q ss_pred             cCCCHHHHHHHHHHcCCcEEEEecC
Q 027856          134 RAVSTEDATAFAERENTFFMETSAL  158 (217)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~Sa~  158 (217)
                         ..=.+..+....+.++.+++.-
T Consensus       296 ---~~G~~l~~~~~~~lPi~yvt~G  317 (374)
T PRK14722        296 ---NLGGVLDTVIRYKLPVHYVSTG  317 (374)
T ss_pred             ---CccHHHHHHHHHCcCeEEEecC
Confidence               3444566677777776555543

>PRK13695 putative NTPase; Provisional

Probab=98.20  E-value=6.8e-05  Score=54.37  Aligned_cols=78  Identities=13%  Similarity=0.140  Sum_probs=43.9

Q ss_pred             hhhcCCcEEEEEEEC---CChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEec
Q 027856           81 AYYRGAVGALLVYDV---TRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSA  157 (217)
Q Consensus        81 ~~~~~~d~ii~v~d~---~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  157 (217)
                      ..+..+++  +++|-   .+..+    ..+...+......+.|++++.+|...       ...........+..+++++ 
T Consensus        92 ~~l~~~~~--lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~~-  157 (174)
T PRK13695         92 RALEEADV--IIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYELT-  157 (174)
T ss_pred             hccCCCCE--EEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECchhh-------HHHHHHHhccCCcEEEEEc-
Confidence            34456676  56772   22222    22334444433447899999987432       2234445555667777774 


Q ss_pred             CCCCCHHHHHHHHHHHH
Q 027856          158 LESMNVENAFTEVLTQI  174 (217)
Q Consensus       158 ~~~~~i~~~~~~i~~~~  174 (217)
                        .+|-+++...+++.+
T Consensus       158 --~~~r~~~~~~~~~~~  172 (174)
T PRK13695        158 --PENRDSLPFEILNRL  172 (174)
T ss_pred             --chhhhhHHHHHHHHH
Confidence              446667777777644

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.19  E-value=3.7e-05  Score=56.82  Aligned_cols=133  Identities=17%  Similarity=0.144  Sum_probs=69.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCC---------------------cccceeEeEEEEEE-------------ECC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLES---------------------KSTIGVEFATRSIR-------------CDD   59 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~---------------------~~~~~~~~~~~~~~-------------~~~   59 (217)
                      --|+++|++|+||||.+-+|.........                     ....+.........             ...
T Consensus         2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~   81 (196)
T PF00448_consen    2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK   81 (196)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence            35899999999999998877653211100                     00122221111100             001


Q ss_pred             eEEEEEEEeCCChhhhh----hhhhhhh--cCCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856           60 KIVKAQIWDTAGQERYR----AITSAYY--RGAVGALLVYDVTRHVT-FENVERWLKELRDHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        60 ~~~~~~l~Dt~G~~~~~----~~~~~~~--~~~d~ii~v~d~~~~~s-~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  132 (217)
                      ..+.+.|+||+|.....    .....++  ...+-+++|++++.... .+.+..++..+      +. --+|+||.|...
T Consensus        82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~------~~-~~lIlTKlDet~  154 (196)
T PF00448_consen   82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF------GI-DGLILTKLDETA  154 (196)
T ss_dssp             TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS------ST-CEEEEESTTSSS
T ss_pred             cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc------cC-ceEEEEeecCCC
Confidence            12468999999943221    1111111  25677889999876542 22222222221      12 247799999644


Q ss_pred             ccCCCHHHHHHHHHHcCCcEEEEec
Q 027856          133 LRAVSTEDATAFAERENTFFMETSA  157 (217)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~Sa  157 (217)
                          ..-.+..+....+.++-.++.
T Consensus       155 ----~~G~~l~~~~~~~~Pi~~it~  175 (196)
T PF00448_consen  155 ----RLGALLSLAYESGLPISYITT  175 (196)
T ss_dssp             ----TTHHHHHHHHHHTSEEEEEES
T ss_pred             ----CcccceeHHHHhCCCeEEEEC
Confidence                334466677777777666554

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.16  E-value=4.7e-06  Score=69.53  Aligned_cols=116  Identities=21%  Similarity=0.196  Sum_probs=80.7

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCc-----CCC-------------CCcccceeEeEEEEEEECCeEEEEEEEeCCCh
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNE-----FSL-------------ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ   72 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~-----~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   72 (217)
                      ...-+|.+.-+-.+||||+-++.+-..     +..             .....++++....+..  +..+.++++||||+
T Consensus        37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~--w~~~~iNiIDTPGH  114 (721)
T KOG0465|consen   37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFT--WRDYRINIIDTPGH  114 (721)
T ss_pred             hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeee--eccceeEEecCCCc
Confidence            356789999999999999999876421     111             1111223333333333  33689999999999


Q ss_pred             hhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856           73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        73 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  132 (217)
                      ..|.--.+..++-.|+.++++++...-..+....|...-+ +   ++|.+..+||+|...
T Consensus       115 vDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~r-y---~vP~i~FiNKmDRmG  170 (721)
T KOG0465|consen  115 VDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKR-Y---NVPRICFINKMDRMG  170 (721)
T ss_pred             eeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHh-c---CCCeEEEEehhhhcC
Confidence            9888777888888999999999877654444444554433 3   899999999999754

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.14  E-value=4.6e-06  Score=65.36  Aligned_cols=59  Identities=22%  Similarity=0.242  Sum_probs=37.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCc------ccceeEeEEEEEEECCeEEEEEEEeCCChhhh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESK------STIGVEFATRSIRCDDKIVKAQIWDTAGQERY   75 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   75 (217)
                      -.++++|++|+|||||+|.|++........      ....++.....+...+.   ..++||||..++
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~  226 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF  226 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence            468999999999999999999865432211      11112222333434322   259999996544

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.12  E-value=7.7e-05  Score=62.51  Aligned_cols=136  Identities=17%  Similarity=0.157  Sum_probs=71.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCC--------CCccc---------------ceeEeEEEEEE------E-CCeEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSL--------ESKST---------------IGVEFATRSIR------C-DDKIV   62 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~--------~~~~~---------------~~~~~~~~~~~------~-~~~~~   62 (217)
                      .-.|+++|++|+||||++..|...-...        ....+               .+.......-.      . .-..+
T Consensus       350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~  429 (559)
T PRK12727        350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY  429 (559)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence            4578999999999999998877531100        00000               11111100000      0 01236


Q ss_pred             EEEEEeCCChhhhhhh----hhh--hhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC
Q 027856           63 KAQIWDTAGQERYRAI----TSA--YYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV  136 (217)
Q Consensus        63 ~~~l~Dt~G~~~~~~~----~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~  136 (217)
                      .+.|+||+|.......    ...  ... ....++|++....  ..++...+..+..    ..+.-+|+||+|...    
T Consensus       430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss--~~Dl~eii~~f~~----~~~~gvILTKlDEt~----  498 (559)
T PRK12727        430 KLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAH--FSDLDEVVRRFAH----AKPQGVVLTKLDETG----  498 (559)
T ss_pred             CEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCC--hhHHHHHHHHHHh----hCCeEEEEecCcCcc----
Confidence            8899999995322111    000  111 2245667776532  3333333443332    235678999999733    


Q ss_pred             CHHHHHHHHHHcCCcEEEEecCC
Q 027856          137 STEDATAFAERENTFFMETSALE  159 (217)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~Sa~~  159 (217)
                      ..-.+.......+.++.+++.-.
T Consensus       499 ~lG~aLsv~~~~~LPI~yvt~GQ  521 (559)
T PRK12727        499 RFGSALSVVVDHQMPITWVTDGQ  521 (559)
T ss_pred             chhHHHHHHHHhCCCEEEEeCCC
Confidence            34556667777777766666443

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.10  E-value=6.4e-05  Score=54.42  Aligned_cols=82  Identities=16%  Similarity=0.032  Sum_probs=44.8

Q ss_pred             EEEEEEeCCChhhh----hhhhhhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC
Q 027856           62 VKAQIWDTAGQERY----RAITSAYY--RGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA  135 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~----~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~  135 (217)
                      ..+.++|++|....    ......+.  ...+.+++|+|+.....   ...+...+....  + ..-+|.||.|....  
T Consensus        83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~--~-~~~viltk~D~~~~--  154 (173)
T cd03115          83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL--G-ITGVILTKLDGDAR--  154 (173)
T ss_pred             CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC--C-CCEEEEECCcCCCC--
Confidence            46889999996321    11111111  34899999999865432   122333333222  2 24677899997542  


Q ss_pred             CCHHHHHHHHHHcCCcEE
Q 027856          136 VSTEDATAFAERENTFFM  153 (217)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~  153 (217)
                        ...+...+...+.++.
T Consensus       155 --~g~~~~~~~~~~~p~~  170 (173)
T cd03115         155 --GGAALSIRAVTGKPIK  170 (173)
T ss_pred             --cchhhhhHHHHCcCeE
Confidence              2223335566665543

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.10  E-value=6.8e-06  Score=64.78  Aligned_cols=57  Identities=25%  Similarity=0.194  Sum_probs=35.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcc------cceeEeEEEEEEECCeEEEEEEEeCCChh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKS------TIGVEFATRSIRCDDKIVKAQIWDTAGQE   73 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   73 (217)
                      -.++++|++|+|||||+|+|++........-      ...++.....+...+.   ..++||||..
T Consensus       165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~  227 (298)
T PRK00098        165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFS  227 (298)
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcC
Confidence            3589999999999999999998654321111      0011222233333332   3699999954

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=98.10  E-value=1.9e-05  Score=58.82  Aligned_cols=63  Identities=21%  Similarity=0.156  Sum_probs=39.3

Q ss_pred             EEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 027856           63 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL  130 (217)
Q Consensus        63 ~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~  130 (217)
                      .+.++||-..  ..+.-+....++|.+|.|+|.+-. ++...+...+...+..  -.++.+|+||+|-
T Consensus       135 e~VivDtEAG--iEHfgRg~~~~vD~vivVvDpS~~-sl~taeri~~L~~elg--~k~i~~V~NKv~e  197 (255)
T COG3640         135 EVVIVDTEAG--IEHFGRGTIEGVDLVIVVVDPSYK-SLRTAERIKELAEELG--IKRIFVVLNKVDE  197 (255)
T ss_pred             cEEEEecccc--hhhhccccccCCCEEEEEeCCcHH-HHHHHHHHHHHHHHhC--CceEEEEEeeccc
Confidence            4556666322  233344566889999999998654 3444444444333331  3789999999995

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.09  E-value=1.4e-05  Score=59.38  Aligned_cols=119  Identities=17%  Similarity=0.186  Sum_probs=76.1

Q ss_pred             eEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhh----------HHHHHHHHHHHH-hhcCCCCcEEEEEeCC
Q 027856           60 KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVT----------FENVERWLKELR-DHTDSNIVIMLVGNKA  128 (217)
Q Consensus        60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s----------~~~~~~~~~~l~-~~~~~~~p~ivv~nK~  128 (217)
                      ..+.+.+.|.+|+..-+..|.+++.++-.+++++.++..+.          .++...++..+. ...-.+.++|+..||.
T Consensus       197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKk  276 (359)
T KOG0085|consen  197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK  276 (359)
T ss_pred             hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechh
Confidence            34567788999988888888888888877777776654321          111122222221 1222578899999999


Q ss_pred             CCCCcc----------------CCCHHHHHHHHHH----cC------CcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 027856          129 DLRHLR----------------AVSTEDATAFAER----EN------TFFMETSALESMNVENAFTEVLTQIYRVV  178 (217)
Q Consensus       129 D~~~~~----------------~~~~~~~~~~~~~----~~------~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  178 (217)
                      |+.+++                ..+.+.+++|...    .+      +.-..++|.+-+|++-+|..+-+.+++..
T Consensus       277 DlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~  352 (359)
T KOG0085|consen  277 DLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  352 (359)
T ss_pred             hhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhh
Confidence            986532                2233444445433    11      12456788889999999999888877654

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.07  E-value=0.00012  Score=59.33  Aligned_cols=135  Identities=17%  Similarity=0.158  Sum_probs=71.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCC---------------------CcccceeEeEEEEEE---------EC-CeE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLE---------------------SKSTIGVEFATRSIR---------CD-DKI   61 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~---------------------~~~~~~~~~~~~~~~---------~~-~~~   61 (217)
                      .-.|+++|++|+||||++..|........                     +....+.......-.         .. ...
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~  320 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR  320 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence            35799999999999999998864211000                     000111111110000         00 012


Q ss_pred             EEEEEEeCCChhhhh----hhhhhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC
Q 027856           62 VKAQIWDTAGQERYR----AITSAYY--RGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA  135 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~----~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~  135 (217)
                      +.+.|+||+|.....    .....++  ...+.+++|+|++...  .++...+..+...   + .--+|+||.|...   
T Consensus       321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~~---~-idglI~TKLDET~---  391 (436)
T PRK11889        321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKDI---H-IDGIVFTKFDETA---  391 (436)
T ss_pred             CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcCC---C-CCEEEEEcccCCC---
Confidence            588999999953211    1112222  2356788888875332  2223333333321   2 2357899999754   


Q ss_pred             CCHHHHHHHHHHcCCcEEEEec
Q 027856          136 VSTEDATAFAERENTFFMETSA  157 (217)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~Sa  157 (217)
                       ..=.+...+...+.++..++.
T Consensus       392 -k~G~iLni~~~~~lPIsyit~  412 (436)
T PRK11889        392 -SSGELLKIPAVSSAPIVLMTD  412 (436)
T ss_pred             -CccHHHHHHHHHCcCEEEEeC
Confidence             233355666777777655554

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=98.06  E-value=9.1e-05  Score=59.73  Aligned_cols=156  Identities=17%  Similarity=0.182  Sum_probs=78.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCccc---ceeEeEEEE---------------EE--E----------CCeEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKST---IGVEFATRS---------------IR--C----------DDKIV   62 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~---~~~~~~~~~---------------~~--~----------~~~~~   62 (217)
                      .=-|++||++|+||||-+..|...-.-......   ++++.+..-               +.  .          .-...
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            456899999999999998877665431111011   111111100               00  0          01113


Q ss_pred             EEEEEeCCChhhhh----hhhhhhhcCC--cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC
Q 027856           63 KAQIWDTAGQERYR----AITSAYYRGA--VGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV  136 (217)
Q Consensus        63 ~~~l~Dt~G~~~~~----~~~~~~~~~~--d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~  136 (217)
                      .+.|+||.|...+.    .-...++..+  .-+.+|++++..  .+++...+..+...   +.. -+++||.|...    
T Consensus       283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~---~i~-~~I~TKlDET~----  352 (407)
T COG1419         283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLF---PID-GLIFTKLDETT----  352 (407)
T ss_pred             CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccC---Ccc-eeEEEcccccC----
Confidence            88999999954332    2233333322  335556666543  33444455544432   222 36789999533    


Q ss_pred             CHHHHHHHHHHcCCcEEEEecCC--CCCHHH-HHHHHHHHHHHHH
Q 027856          137 STEDATAFAERENTFFMETSALE--SMNVEN-AFTEVLTQIYRVV  178 (217)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~~-~~~~i~~~~~~~~  178 (217)
                      +.=.+-....+.+.++-.++--.  .+++.. --.++++.+....
T Consensus       353 s~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~~  397 (407)
T COG1419         353 SLGNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGTF  397 (407)
T ss_pred             chhHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhccc
Confidence            44555666666666655554333  333322 1234555554433

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=98.05  E-value=2.9e-05  Score=55.93  Aligned_cols=134  Identities=20%  Similarity=0.259  Sum_probs=68.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeC-CCh---------------------
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDT-AGQ---------------------   72 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt-~G~---------------------   72 (217)
                      +|.+.|.+|+|||||+++++........ +..|  +....+.-++..+-+.+.|. .|.                     
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~-~v~G--f~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~   77 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKKGL-PVGG--FYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD   77 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHTCG-GEEE--EEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhccCC-ccce--EEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence            6899999999999999998865421111 1112  22333334555566666666 331                     


Q ss_pred             -hhhhhh----hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCC-CCCCccCCCHHHHHHHHH
Q 027856           73 -ERYRAI----TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKA-DLRHLRAVSTEDATAFAE  146 (217)
Q Consensus        73 -~~~~~~----~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~-D~~~~~~~~~~~~~~~~~  146 (217)
                       +.+...    ....+..+|  ++++|=--+--+ ....|.+.+......+.|++.++-+. +.        ...+++..
T Consensus        78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl-~~~~F~~~v~~~l~s~~~vi~vv~~~~~~--------~~l~~i~~  146 (168)
T PF03266_consen   78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMEL-KSPGFREAVEKLLDSNKPVIGVVHKRSDN--------PFLEEIKR  146 (168)
T ss_dssp             HHHHHCCCCCCCHHHHHCCH--EEEE---STTCC-C-CHHHHHHHHHHCTTSEEEEE--SS--S--------CCHHHHHT
T ss_pred             HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhh-cCHHHHHHHHHHHcCCCcEEEEEecCCCc--------HHHHHHHh
Confidence             112211    111124555  566663222100 01345555555555688888887766 32        12555667


Q ss_pred             HcCCcEEEEecCCCCC
Q 027856          147 RENTFFMETSALESMN  162 (217)
Q Consensus       147 ~~~~~~~~~Sa~~~~~  162 (217)
                      +.++.+++++..+...
T Consensus       147 ~~~~~i~~vt~~NRd~  162 (168)
T PF03266_consen  147 RPDVKIFEVTEENRDA  162 (168)
T ss_dssp             TTTSEEEE--TTTCCC
T ss_pred             CCCcEEEEeChhHHhh
Confidence            7788888887775443

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=98.04  E-value=0.00011  Score=58.30  Aligned_cols=89  Identities=20%  Similarity=0.132  Sum_probs=52.0

Q ss_pred             EEEEEEeCCChhhhhhhhhhh--------hcCCcEEEEEEECCChhhHHH-H-HHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027856           62 VKAQIWDTAGQERYRAITSAY--------YRGAVGALLVYDVTRHVTFEN-V-ERWLKELRDHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~--------~~~~d~ii~v~d~~~~~s~~~-~-~~~~~~l~~~~~~~~p~ivv~nK~D~~  131 (217)
                      ....++++.|...-......+        .-..|+++-|+|+.+-..... . +....++....      +|++||.|+.
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD------~ivlNK~Dlv  158 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFAD------VIVLNKTDLV  158 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCc------EEEEecccCC
Confidence            466788888832211111111        124588999999977544322 2 23444443322      7999999998


Q ss_pred             CccCCCHHHHHHHHHHcC--CcEEEEecC
Q 027856          132 HLRAVSTEDATAFAEREN--TFFMETSAL  158 (217)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~--~~~~~~Sa~  158 (217)
                      +...  .+..+...+..+  +.++.++..
T Consensus       159 ~~~~--l~~l~~~l~~lnp~A~i~~~~~~  185 (323)
T COG0523         159 DAEE--LEALEARLRKLNPRARIIETSYG  185 (323)
T ss_pred             CHHH--HHHHHHHHHHhCCCCeEEEcccc
Confidence            7442  455566666654  557777773

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.03  E-value=0.00016  Score=59.32  Aligned_cols=136  Identities=17%  Similarity=0.121  Sum_probs=71.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcc-----------------------cceeEeEEEEEE-------ECCeEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKS-----------------------TIGVEFATRSIR-------CDDKIV   62 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~-----------------------~~~~~~~~~~~~-------~~~~~~   62 (217)
                      .-.|+++|++|+||||++..|.+.........                       ..+.......-.       ..-...
T Consensus       191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~  270 (420)
T PRK14721        191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK  270 (420)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence            45899999999999999998876421000000                       001110000000       000113


Q ss_pred             EEEEEeCCChhhh----hhhhhhhh--cCCcEEEEEEECCC-hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC
Q 027856           63 KAQIWDTAGQERY----RAITSAYY--RGAVGALLVYDVTR-HVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA  135 (217)
Q Consensus        63 ~~~l~Dt~G~~~~----~~~~~~~~--~~~d~ii~v~d~~~-~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~  135 (217)
                      .+.++||+|....    ......+.  ....-.++|+|++. .....   .++..+...   + .--+|+||.|...   
T Consensus       271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~---~~~~~f~~~---~-~~~~I~TKlDEt~---  340 (420)
T PRK14721        271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLD---EVISAYQGH---G-IHGCIITKVDEAA---  340 (420)
T ss_pred             CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHH---HHHHHhcCC---C-CCEEEEEeeeCCC---
Confidence            7789999994321    11122221  22345778888874 33333   333333221   2 2357899999644   


Q ss_pred             CCHHHHHHHHHHcCCcEEEEecCC
Q 027856          136 VSTEDATAFAERENTFFMETSALE  159 (217)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~Sa~~  159 (217)
                       ..=.+..+....+.++..++.-.
T Consensus       341 -~~G~~l~~~~~~~lPi~yvt~Gq  363 (420)
T PRK14721        341 -SLGIALDAVIRRKLVLHYVTNGQ  363 (420)
T ss_pred             -CccHHHHHHHHhCCCEEEEECCC
Confidence             34446667777788866666433

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.02  E-value=4.4e-05  Score=53.82  Aligned_cols=58  Identities=17%  Similarity=0.066  Sum_probs=35.7

Q ss_pred             EEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 027856           61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKAD  129 (217)
Q Consensus        61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D  129 (217)
                      .+.+.|+||+|..   .....++..+|-++++...+-.+....+..  ..+. .     .=++++||.|
T Consensus        91 ~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~~~~-~-----~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAGDDIQAIKA--GIME-I-----ADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCchhHHHHhhh--hHhh-h-----cCEEEEeCCC
Confidence            3688999998844   222347888999999987763333222111  1121 1     1278899987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=97.90  E-value=6e-06  Score=60.16  Aligned_cols=80  Identities=18%  Similarity=0.095  Sum_probs=43.3

Q ss_pred             EEEEEEeCCChhhhhhh-----hhhhhcCCcEEEEEEECCChhhHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCCCccC
Q 027856           62 VKAQIWDTAGQERYRAI-----TSAYYRGAVGALLVYDVTRHVTFENVER-WLKELRDHTDSNIVIMLVGNKADLRHLRA  135 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~-----~~~~~~~~d~ii~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~ivv~nK~D~~~~~~  135 (217)
                      ....++++.|...-..+     ...-.-..+.++.|+|+.+-........ +..++....      ++++||+|+.+.. 
T Consensus        85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD------vIvlnK~D~~~~~-  157 (178)
T PF02492_consen   85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD------VIVLNKIDLVSDE-  157 (178)
T ss_dssp             -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S------EEEEE-GGGHHHH-
T ss_pred             cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcC------EEEEeccccCChh-
Confidence            46778888884332222     0111235688999999977543333433 444443322      7899999987643 


Q ss_pred             CCHHHHHHHHHHc
Q 027856          136 VSTEDATAFAERE  148 (217)
Q Consensus       136 ~~~~~~~~~~~~~  148 (217)
                      ...+..++..+..
T Consensus       158 ~~i~~~~~~ir~l  170 (178)
T PF02492_consen  158 QKIERVREMIREL  170 (178)
T ss_dssp             --HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH
Confidence            2234455555553

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.89  E-value=0.00019  Score=59.35  Aligned_cols=136  Identities=19%  Similarity=0.106  Sum_probs=69.7

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCC----------CCcc-----------cceeEeEEEEEEEC-----------
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSL----------ESKS-----------TIGVEFATRSIRCD-----------   58 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~----------~~~~-----------~~~~~~~~~~~~~~-----------   58 (217)
                      ..+..|+++|.+|+||||++..|...-...          .+.+           ..+..........+           
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~  172 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK  172 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence            346789999999999999988775421100          0000           01111111100000           


Q ss_pred             CeEEEEEEEeCCChhhhhhh----hh--hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856           59 DKIVKAQIWDTAGQERYRAI----TS--AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        59 ~~~~~~~l~Dt~G~~~~~~~----~~--~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  132 (217)
                      -....+.++||+|.......    ..  .....+|.+++|+|++...  + .......+....  + ..-+|+||.|...
T Consensus       173 ~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq--~-av~~a~~F~~~l--~-i~gvIlTKlD~~a  246 (437)
T PRK00771        173 FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ--Q-AKNQAKAFHEAV--G-IGGIIITKLDGTA  246 (437)
T ss_pred             hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH--H-HHHHHHHHHhcC--C-CCEEEEecccCCC
Confidence            01137899999995432211    11  1133578899999987653  1 112222222211  1 2357889999643


Q ss_pred             ccCCCHHHHHHHHHHcCCcEEEEe
Q 027856          133 LRAVSTEDATAFAERENTFFMETS  156 (217)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~S  156 (217)
                      .    .=.+.......+.++.+++
T Consensus       247 ~----~G~~ls~~~~~~~Pi~fig  266 (437)
T PRK00771        247 K----GGGALSAVAETGAPIKFIG  266 (437)
T ss_pred             c----ccHHHHHHHHHCcCEEEEe
Confidence            1    2234455556666655544

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=97.89  E-value=3.2e-05  Score=56.63  Aligned_cols=24  Identities=25%  Similarity=0.473  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .+-+.|+|+.||||||+.+.+...
T Consensus         3 ~ya~lV~GpAgSGKSTyC~~~~~h   26 (273)
T KOG1534|consen    3 RYAQLVMGPAGSGKSTYCSSMYEH   26 (273)
T ss_pred             ceeEEEEccCCCCcchHHHHHHHH
Confidence            467899999999999999988764

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.89  E-value=0.00012  Score=56.85  Aligned_cols=89  Identities=16%  Similarity=0.044  Sum_probs=63.7

Q ss_pred             hhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecC
Q 027856           80 SAYYRGAVGALLVYDVTRHV-TFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSAL  158 (217)
Q Consensus        80 ~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  158 (217)
                      +.-+.+.|-+++|+++.+|. ++..+..++-.....   ++..+|++||+|+.+..+...++........+...+.+|++
T Consensus        74 Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~---gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~  150 (301)
T COG1162          74 RPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG---GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAK  150 (301)
T ss_pred             CCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc---CCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCc
Confidence            33444567777777777765 555566666655543   67778889999998754433345666777789999999999


Q ss_pred             CCCCHHHHHHHHH
Q 027856          159 ESMNVENAFTEVL  171 (217)
Q Consensus       159 ~~~~i~~~~~~i~  171 (217)
                      ++.++.++...+.
T Consensus       151 ~~~~~~~l~~~l~  163 (301)
T COG1162         151 NGDGLEELAELLA  163 (301)
T ss_pred             CcccHHHHHHHhc
Confidence            9999998877654

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.88  E-value=8e-05  Score=51.92  Aligned_cols=107  Identities=17%  Similarity=0.150  Sum_probs=61.3

Q ss_pred             EEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECC
Q 027856           17 VLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVT   96 (217)
Q Consensus        17 ~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~   96 (217)
                      ..-|.+|+|||++.-.+...-- .....+.-.+...   ......+.+.++|+|+..  .......+..+|.++++.+.+
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~   77 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALA-KLGKRVLLLDADL---GLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE   77 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECCC---CCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence            3457899999999665443211 1111111111110   001111688999999843  333456788899999999875


Q ss_pred             ChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027856           97 RHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        97 ~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~  131 (217)
                       ..++......++.+.... ...++.+|+|+.+..
T Consensus        78 -~~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~~  110 (139)
T cd02038          78 -PTSITDAYALIKKLAKQL-RVLNFRVVVNRAESP  110 (139)
T ss_pred             -hhHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCCH
Confidence             444444444455554332 355778999999753

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.86  E-value=0.00037  Score=57.59  Aligned_cols=88  Identities=16%  Similarity=0.120  Sum_probs=49.3

Q ss_pred             EEEEEEeCCChhhhh----hhhhhhhc---CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCcc
Q 027856           62 VKAQIWDTAGQERYR----AITSAYYR---GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLR  134 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~----~~~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~  134 (217)
                      +.+.|+||+|.....    .....++.   ...-+++|++++..  ...+...+..+...   + +--+|+||.|...  
T Consensus       300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~---~-~~~vI~TKlDet~--  371 (424)
T PRK05703        300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRL---P-LDGLIFTKLDETS--  371 (424)
T ss_pred             CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCC---C-CCEEEEecccccc--
Confidence            588999999953221    12222333   23456777787543  22233333333321   2 2258899999643  


Q ss_pred             CCCHHHHHHHHHHcCCcEEEEecCC
Q 027856          135 AVSTEDATAFAERENTFFMETSALE  159 (217)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~Sa~~  159 (217)
                        ..-.+..+....+.++..++.-.
T Consensus       372 --~~G~i~~~~~~~~lPv~yit~Gq  394 (424)
T PRK05703        372 --SLGSILSLLIESGLPISYLTNGQ  394 (424)
T ss_pred             --cccHHHHHHHHHCCCEEEEeCCC
Confidence              33456777778888876666543

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.86  E-value=0.00088  Score=56.01  Aligned_cols=136  Identities=18%  Similarity=0.162  Sum_probs=68.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCc--------cc---------------ceeEeEEEEEEE-------CCeEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESK--------ST---------------IGVEFATRSIRC-------DDKIVK   63 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~--------~~---------------~~~~~~~~~~~~-------~~~~~~   63 (217)
                      --++++|++|+||||++..|.+........        .+               .+.......-..       .-....
T Consensus       257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d  336 (484)
T PRK06995        257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKH  336 (484)
T ss_pred             cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCC
Confidence            458999999999999999888643111000        00               000000000000       001236


Q ss_pred             EEEEeCCChhhhh---hhhhhhhcC---CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCC
Q 027856           64 AQIWDTAGQERYR---AITSAYYRG---AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS  137 (217)
Q Consensus        64 ~~l~Dt~G~~~~~---~~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~  137 (217)
                      +.++||+|.....   ......+..   ..-.++|+|+....  ..+......+..    ....-+|+||.|...    .
T Consensus       337 ~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~i~~~f~~----~~~~g~IlTKlDet~----~  406 (484)
T PRK06995        337 IVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNEVVQAYRG----PGLAGCILTKLDEAA----S  406 (484)
T ss_pred             eEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHHHHHHhcc----CCCCEEEEeCCCCcc----c
Confidence            7899999932211   111111211   22367888876432  222222222222    223357789999643    3


Q ss_pred             HHHHHHHHHHcCCcEEEEecCC
Q 027856          138 TEDATAFAERENTFFMETSALE  159 (217)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~Sa~~  159 (217)
                      .-.+.......+.++.+++.-.
T Consensus       407 ~G~~l~i~~~~~lPI~yvt~GQ  428 (484)
T PRK06995        407 LGGALDVVIRYKLPLHYVSNGQ  428 (484)
T ss_pred             chHHHHHHHHHCCCeEEEecCC
Confidence            4456667777788866665433

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.85  E-value=0.00046  Score=55.71  Aligned_cols=138  Identities=17%  Similarity=0.149  Sum_probs=71.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCC----------C-----------cccceeEeEEEEEE---------EC-Ce
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLE----------S-----------KSTIGVEFATRSIR---------CD-DK   60 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~----------~-----------~~~~~~~~~~~~~~---------~~-~~   60 (217)
                      ..-.|+++|++|+||||++..+........          +           ....+..+....-.         .. ..
T Consensus       205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~  284 (407)
T PRK12726        205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN  284 (407)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence            345689999999999999998765211000          0           00111111100000         00 02


Q ss_pred             EEEEEEEeCCChhhhh----hhhhhhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCcc
Q 027856           61 IVKAQIWDTAGQERYR----AITSAYYR--GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLR  134 (217)
Q Consensus        61 ~~~~~l~Dt~G~~~~~----~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~  134 (217)
                      .+.+.|+||+|.....    .....+..  ..+.+++|.++...  ..++...+..+..    -.+--+|+||.|...  
T Consensus       285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~d~~~i~~~f~~----l~i~glI~TKLDET~--  356 (407)
T PRK12726        285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SADVMTILPKLAE----IPIDGFIITKMDETT--  356 (407)
T ss_pred             CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HHHHHHHHHhcCc----CCCCEEEEEcccCCC--
Confidence            3588999999963221    11122222  34666777765322  2233333332221    123357899999643  


Q ss_pred             CCCHHHHHHHHHHcCCcEEEEecCC
Q 027856          135 AVSTEDATAFAERENTFFMETSALE  159 (217)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~Sa~~  159 (217)
                        ..=.+...+...+.++..++.-.
T Consensus       357 --~~G~~Lsv~~~tglPIsylt~GQ  379 (407)
T PRK12726        357 --RIGDLYTVMQETNLPVLYMTDGQ  379 (407)
T ss_pred             --CccHHHHHHHHHCCCEEEEecCC
Confidence              33446667777787766666433

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.83  E-value=0.00018  Score=47.34  Aligned_cols=82  Identities=18%  Similarity=0.177  Sum_probs=49.8

Q ss_pred             EEEEc-CCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEE
Q 027856           16 VVLIG-DSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (217)
Q Consensus        16 I~v~G-~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d   94 (217)
                      |++.| ..|+||||+...+...-.. ...+       ...+..+.. +.+.++|+|+.....  ....+..+|.++++++
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~-------vl~~d~d~~-~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~   70 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALAR-RGKR-------VLLIDLDPQ-YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ   70 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHh-CCCc-------EEEEeCCCC-CCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence            56666 6699999998766543321 1111       112222222 688999999854322  2366777999999988


Q ss_pred             CCChhhHHHHHHHHH
Q 027856           95 VTRHVTFENVERWLK  109 (217)
Q Consensus        95 ~~~~~s~~~~~~~~~  109 (217)
                      .+ ..+...+..+++
T Consensus        71 ~~-~~s~~~~~~~~~   84 (104)
T cd02042          71 PS-PLDLDGLEKLLE   84 (104)
T ss_pred             CC-HHHHHHHHHHHH
Confidence            74 445555555544

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.82  E-value=0.0003  Score=55.92  Aligned_cols=95  Identities=11%  Similarity=0.090  Sum_probs=50.4

Q ss_pred             EEEEEEeCCChhhhhhhhhhhhc--------CCcEEEEEEECCChhhH-HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856           62 VKAQIWDTAGQERYRAITSAYYR--------GAVGALLVYDVTRHVTF-ENVERWLKELRDHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~s~-~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  132 (217)
                      ....++++.|...-..+...++.        ..++++.|+|+.+.... +.......++...   +   +|++||+|+..
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~A---D---~IvlnK~Dl~~  164 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA---D---RILLTKTDVAG  164 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhC---C---EEEEeccccCC
Confidence            45678999995443333333321        24789999998754321 1111222333322   1   78999999876


Q ss_pred             ccCCCHHHHHHHHHHcC--CcEEEEecCCCCCHHHHH
Q 027856          133 LRAVSTEDATAFAEREN--TFFMETSALESMNVENAF  167 (217)
Q Consensus       133 ~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~  167 (217)
                      .    .+.+.+..+..+  +.++.++ ........+|
T Consensus       165 ~----~~~~~~~l~~lnp~a~i~~~~-~~~v~~~~l~  196 (318)
T PRK11537        165 E----AEKLRERLARINARAPVYTVV-HGDIDLSLLF  196 (318)
T ss_pred             H----HHHHHHHHHHhCCCCEEEEec-cCCCCHHHHh
Confidence            3    244555555543  4455544 2223444444

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.80  E-value=3.5e-05  Score=59.62  Aligned_cols=60  Identities=23%  Similarity=0.365  Sum_probs=40.5

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCC----CCcccceeEeEEEE-EEECCeEEEEEEEeCCC
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSL----ESKSTIGVEFATRS-IRCDDKIVKAQIWDTAG   71 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~l~Dt~G   71 (217)
                      ...+++.|+|-||+|||||||++...+...    ......|.+..+.. +.+.... .+.+.||||
T Consensus       141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPG  205 (335)
T KOG2485|consen  141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPG  205 (335)
T ss_pred             CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCC
Confidence            356899999999999999999877654322    22233444444444 3443332 588999999

>PRK10867 signal recognition particle protein; Provisional

Probab=97.78  E-value=0.00077  Score=55.71  Aligned_cols=86  Identities=16%  Similarity=0.021  Sum_probs=46.4

Q ss_pred             EEEEEEeCCChhhh----hhhhhhh--hcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC
Q 027856           62 VKAQIWDTAGQERY----RAITSAY--YRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA  135 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~----~~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~  135 (217)
                      +.+.|+||+|....    -.....+  .-..+.+++|+|+....   ++......+....  + ..-+|+||.|..... 
T Consensus       184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~--~-i~giIlTKlD~~~rg-  256 (433)
T PRK10867        184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL--G-LTGVILTKLDGDARG-  256 (433)
T ss_pred             CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC--C-CCEEEEeCccCcccc-
Confidence            57899999994321    1111111  12567789999986542   2222333333211  2 235778999964321 


Q ss_pred             CCHHHHHHHHHHcCCcEEEEec
Q 027856          136 VSTEDATAFAERENTFFMETSA  157 (217)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~Sa  157 (217)
                         -.+.......+.|+.+++.
T Consensus       257 ---G~alsi~~~~~~PI~fig~  275 (433)
T PRK10867        257 ---GAALSIRAVTGKPIKFIGT  275 (433)
T ss_pred             ---cHHHHHHHHHCcCEEEEeC
Confidence               2255566666777555543

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.76  E-value=0.00015  Score=41.75  Aligned_cols=45  Identities=24%  Similarity=0.253  Sum_probs=31.2

Q ss_pred             cCCcEEEEEEECCC--hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 027856           84 RGAVGALLVYDVTR--HVTFENVERWLKELRDHTDSNIVIMLVGNKAD  129 (217)
Q Consensus        84 ~~~d~ii~v~d~~~--~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D  129 (217)
                      +-.++++|++|++.  +.+.++-..++.+++.... ++|+++|+||+|
T Consensus        12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D   58 (58)
T PF06858_consen   12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID   58 (58)
T ss_dssp             GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred             hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence            44688999999986  4567776778888888774 899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>TIGR00959 ffh signal recognition particle protein

Probab=97.76  E-value=0.0006  Score=56.28  Aligned_cols=86  Identities=17%  Similarity=0.033  Sum_probs=47.9

Q ss_pred             EEEEEEeCCChhhh----hhhhhh--hhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC
Q 027856           62 VKAQIWDTAGQERY----RAITSA--YYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA  135 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~----~~~~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~  135 (217)
                      +.+.|+||+|....    -.....  ..-..+.+++|+|+....   +.......+....  + ..-+|+||.|....  
T Consensus       183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v--~-i~giIlTKlD~~~~--  254 (428)
T TIGR00959       183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL--G-LTGVVLTKLDGDAR--  254 (428)
T ss_pred             CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC--C-CCEEEEeCccCccc--
Confidence            57899999994221    111111  123568889999987543   2333333333222  2 23577999996432  


Q ss_pred             CCHHHHHHHHHHcCCcEEEEec
Q 027856          136 VSTEDATAFAERENTFFMETSA  157 (217)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~Sa  157 (217)
                        .-.+.......+.|+.+++.
T Consensus       255 --~G~~lsi~~~~~~PI~fi~~  274 (428)
T TIGR00959       255 --GGAALSVRSVTGKPIKFIGV  274 (428)
T ss_pred             --ccHHHHHHHHHCcCEEEEeC
Confidence              22256666677777555543

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.74  E-value=0.00044  Score=56.58  Aligned_cols=136  Identities=20%  Similarity=0.212  Sum_probs=70.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCc-CCCC---------------------CcccceeEeEEEE-E-----EECCeEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNE-FSLE---------------------SKSTIGVEFATRS-I-----RCDDKIVKAQ   65 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~-~~~~---------------------~~~~~~~~~~~~~-~-----~~~~~~~~~~   65 (217)
                      .-|+++|++||||||++..|.... ....                     +....+....... .     ......+.+.
T Consensus       224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V  303 (432)
T PRK12724        224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI  303 (432)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence            458899999999999999887532 1000                     0001111111100 0     0011235789


Q ss_pred             EEeCCChhhh----hhhhhhhhc-----CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC
Q 027856           66 IWDTAGQERY----RAITSAYYR-----GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV  136 (217)
Q Consensus        66 l~Dt~G~~~~----~~~~~~~~~-----~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~  136 (217)
                      ++||+|....    ...+..++.     ...-.++|+|++...  +.+...+......   + +--+|+||.|...    
T Consensus       304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~~---~-~~glIlTKLDEt~----  373 (432)
T PRK12724        304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYESL---N-YRRILLTKLDEAD----  373 (432)
T ss_pred             EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcCC---C-CCEEEEEcccCCC----
Confidence            9999995321    111122221     234577888887653  1222222222211   2 2357899999643    


Q ss_pred             CHHHHHHHHHHcCCcEEEEecCC
Q 027856          137 STEDATAFAERENTFFMETSALE  159 (217)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~Sa~~  159 (217)
                      ..=.+.......+.++..++.-.
T Consensus       374 ~~G~il~i~~~~~lPI~ylt~GQ  396 (432)
T PRK12724        374 FLGSFLELADTYSKSFTYLSVGQ  396 (432)
T ss_pred             CccHHHHHHHHHCCCEEEEecCC
Confidence            23335666777777766655443

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.73  E-value=0.001  Score=58.40  Aligned_cols=136  Identities=18%  Similarity=0.135  Sum_probs=70.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCc-c----------------------cceeEeEEEEEEE--------CCeEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESK-S----------------------TIGVEFATRSIRC--------DDKIV   62 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~-~----------------------~~~~~~~~~~~~~--------~~~~~   62 (217)
                      --|+++|+.|+||||.+..|.+........ .                      ..+....... ..        .-...
T Consensus       186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~-~~~~l~~al~~~~~~  264 (767)
T PRK14723        186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVK-DAADLRFALAALGDK  264 (767)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccC-CHHHHHHHHHHhcCC
Confidence            357999999999999999888643111000 0                      0111110000 00        01124


Q ss_pred             EEEEEeCCChhh----hhhhhhhh--hcCCcEEEEEEECCC-hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC
Q 027856           63 KAQIWDTAGQER----YRAITSAY--YRGAVGALLVYDVTR-HVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA  135 (217)
Q Consensus        63 ~~~l~Dt~G~~~----~~~~~~~~--~~~~d~ii~v~d~~~-~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~  135 (217)
                      .+.|+||+|...    .......+  ....+-.++|+|++. ...+.++   ...+......+ +--+|+||.|...   
T Consensus       265 D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i---~~~f~~~~~~~-i~glIlTKLDEt~---  337 (767)
T PRK14723        265 HLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEV---VHAYRHGAGED-VDGCIITKLDEAT---  337 (767)
T ss_pred             CEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHH---HHHHhhcccCC-CCEEEEeccCCCC---
Confidence            789999999321    11111111  123456788888864 3333333   23332211001 2357899999644   


Q ss_pred             CCHHHHHHHHHHcCCcEEEEecC
Q 027856          136 VSTEDATAFAERENTFFMETSAL  158 (217)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~Sa~  158 (217)
                       ..=.+..+....+.++.+++.-
T Consensus       338 -~~G~iL~i~~~~~lPI~yit~G  359 (767)
T PRK14723        338 -HLGPALDTVIRHRLPVHYVSTG  359 (767)
T ss_pred             -CccHHHHHHHHHCCCeEEEecC
Confidence             2333556677777776666543

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.71  E-value=0.00044  Score=44.45  Aligned_cols=70  Identities=17%  Similarity=0.116  Sum_probs=45.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhh-hhhhhcCCcEEEEEEE
Q 027856           16 VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAI-TSAYYRGAVGALLVYD   94 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-~~~~~~~~d~ii~v~d   94 (217)
                      +++.|..|+||||+...+........+ ..       ..  ++    .+.++|+++....... .......+|.++++++
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~-~v-------~~--~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~   67 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRGK-RV-------LL--ID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT   67 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCC-eE-------EE--EC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence            678899999999999887755422111 11       11  11    7789999985432221 2445667899999988


Q ss_pred             CCChh
Q 027856           95 VTRHV   99 (217)
Q Consensus        95 ~~~~~   99 (217)
                      .+...
T Consensus        68 ~~~~~   72 (99)
T cd01983          68 PEALA   72 (99)
T ss_pred             Cchhh
Confidence            76543

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=97.70  E-value=0.00019  Score=59.14  Aligned_cols=133  Identities=20%  Similarity=0.179  Sum_probs=83.8

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcC------------CCC----CcccceeEeEEEEEEE--------------CCe
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEF------------SLE----SKSTIGVEFATRSIRC--------------DDK   60 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~------------~~~----~~~~~~~~~~~~~~~~--------------~~~   60 (217)
                      .+.-++.|+.+-..|||||-..|...--            ...    ....+++......+.+              ++.
T Consensus        17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~   96 (842)
T KOG0469|consen   17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN   96 (842)
T ss_pred             cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence            3456788999999999999998876311            000    0111111111122111              344


Q ss_pred             EEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC-ccCCCHH
Q 027856           61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH-LRAVSTE  139 (217)
Q Consensus        61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~-~~~~~~~  139 (217)
                      .+.++++|.||+..|.+-....++-.|+.++|+|+-+.--.+.-..+...+.+.   -+| ++++||.|..- +-+++.+
T Consensus        97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ER---IkP-vlv~NK~DRAlLELq~~~E  172 (842)
T KOG0469|consen   97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER---IKP-VLVMNKMDRALLELQLSQE  172 (842)
T ss_pred             ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhh---ccc-eEEeehhhHHHHhhcCCHH
Confidence            578999999999999998888999999999999988764333222344444432   344 58899999632 2345666


Q ss_pred             HHHHHHHH
Q 027856          140 DATAFAER  147 (217)
Q Consensus       140 ~~~~~~~~  147 (217)
                      ++-+..++
T Consensus       173 eLyqtf~R  180 (842)
T KOG0469|consen  173 ELYQTFQR  180 (842)
T ss_pred             HHHHHHHH
Confidence            66554443

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.68  E-value=0.00021  Score=57.02  Aligned_cols=93  Identities=16%  Similarity=0.163  Sum_probs=53.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCc---------------------ccceeEeEEEEEEE-------------CC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESK---------------------STIGVEFATRSIRC-------------DD   59 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~---------------------~~~~~~~~~~~~~~-------------~~   59 (217)
                      -=|.++|..|+||||.+-.|........+.                     .-.++.++..+...             ..
T Consensus       102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKk  181 (483)
T KOG0780|consen  102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKK  181 (483)
T ss_pred             cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHh
Confidence            347899999999999987766421111110                     01222233322211             23


Q ss_pred             eEEEEEEEeCCChhhhh-hhhhh-----hhcCCcEEEEEEECCChhhHHHHHH
Q 027856           60 KIVKAQIWDTAGQERYR-AITSA-----YYRGAVGALLVYDVTRHVTFENVER  106 (217)
Q Consensus        60 ~~~~~~l~Dt~G~~~~~-~~~~~-----~~~~~d~ii~v~d~~~~~s~~~~~~  106 (217)
                      +.+.+.|+||+|...-. ++.+.     -.-+.|-+|+|.|++-....+....
T Consensus       182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~  234 (483)
T KOG0780|consen  182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQAR  234 (483)
T ss_pred             cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHH
Confidence            34799999999943221 12211     1235789999999998776554433

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.67  E-value=0.00038  Score=52.45  Aligned_cols=116  Identities=20%  Similarity=0.249  Sum_probs=71.4

Q ss_pred             eeEEEEEcCCCC--CHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           13 LFKVVLIGDSGV--GKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        13 ~~~I~v~G~~~~--GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      .+-++|+|.+|+  ||.+|+.+|....|.........+.+...++........+.+.-.+--+++.--.........+++
T Consensus         4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~v   83 (418)
T KOG4273|consen    4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFV   83 (418)
T ss_pred             CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEE
Confidence            456789999999  999999999988776555444444444444433222223333322221222212222334557899


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCC
Q 027856           91 LVYDVTRHVTFENVERWLKELRDHTDSNIV-IMLVGNKADLR  131 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~  131 (217)
                      ++||.+....+..+..|+.--...   ... .+-++||.|.+
T Consensus        84 mvfdlse~s~l~alqdwl~htdin---sfdillcignkvdrv  122 (418)
T KOG4273|consen   84 MVFDLSEKSGLDALQDWLPHTDIN---SFDILLCIGNKVDRV  122 (418)
T ss_pred             EEEeccchhhhHHHHhhccccccc---cchhheecccccccc
Confidence            999999999999888887753321   222 34567999964

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.67  E-value=0.0013  Score=53.64  Aligned_cols=135  Identities=13%  Similarity=0.085  Sum_probs=71.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCC----------CC---------------cccceeEeEEEEEE-------ECCe
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSL----------ES---------------KSTIGVEFATRSIR-------CDDK   60 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~----------~~---------------~~~~~~~~~~~~~~-------~~~~   60 (217)
                      +-.|+++|++|+||||.+..|.......          ..               ..-.+.........       -.-.
T Consensus       174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~  253 (388)
T PRK12723        174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK  253 (388)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence            4578999999999999998776421100          00               00111111111100       0012


Q ss_pred             EEEEEEEeCCChhhhh----hhhhhhhcC--Cc-EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCc
Q 027856           61 IVKAQIWDTAGQERYR----AITSAYYRG--AV-GALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL  133 (217)
Q Consensus        61 ~~~~~l~Dt~G~~~~~----~~~~~~~~~--~d-~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~  133 (217)
                      .+.+.++||+|.....    .-...++..  .+ -.++|+|++...  ..+...+......    -+--+|+||.|... 
T Consensus       254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~~~~~----~~~~~I~TKlDet~-  326 (388)
T PRK12723        254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQFSPF----SYKTVIFTKLDETT-  326 (388)
T ss_pred             CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHHhcCC----CCCEEEEEeccCCC-
Confidence            3588999999943211    111222222  12 578888987652  2333333333221    12357899999643 


Q ss_pred             cCCCHHHHHHHHHHcCCcEEEEec
Q 027856          134 RAVSTEDATAFAERENTFFMETSA  157 (217)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~Sa  157 (217)
                         ..=.+..+....+.++..++.
T Consensus       327 ---~~G~~l~~~~~~~~Pi~yit~  347 (388)
T PRK12723        327 ---CVGNLISLIYEMRKEVSYVTD  347 (388)
T ss_pred             ---cchHHHHHHHHHCCCEEEEeC
Confidence               333455666777777655554

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.63  E-value=2e-05  Score=62.84  Aligned_cols=83  Identities=18%  Similarity=0.169  Sum_probs=51.4

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhh--hhhhhhhhcCCc
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY--RAITSAYYRGAV   87 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~~~~~~~~~d   87 (217)
                      ....|.|+++|.|++||||+||+|-...+.... |..|.+..-.++....   .+-|+|+||..--  .+-....++   
T Consensus       304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvA-PIpGETKVWQYItLmk---rIfLIDcPGvVyps~dset~ivLk---  376 (572)
T KOG2423|consen  304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVA-PIPGETKVWQYITLMK---RIFLIDCPGVVYPSSDSETDIVLK---  376 (572)
T ss_pred             CccceeeeeecCCCCchHHHHHHHhhccccccc-CCCCcchHHHHHHHHh---ceeEecCCCccCCCCCchHHHHhh---
Confidence            345799999999999999999999998876554 3333333222222222   6679999993211  122233333   


Q ss_pred             EEEEEEECCChh
Q 027856           88 GALLVYDVTRHV   99 (217)
Q Consensus        88 ~ii~v~d~~~~~   99 (217)
                      +++=|=.+.+++
T Consensus       377 GvVRVenv~~pe  388 (572)
T KOG2423|consen  377 GVVRVENVKNPE  388 (572)
T ss_pred             ceeeeeecCCHH
Confidence            345555566654

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.62  E-value=0.00037  Score=46.18  Aligned_cols=100  Identities=20%  Similarity=0.123  Sum_probs=58.0

Q ss_pred             EcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCCh
Q 027856           19 IGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH   98 (217)
Q Consensus        19 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~   98 (217)
                      =+..|+||||+...|...-.......+.-.+     .+.... ..+.++|+|+....  .....+..+|.++++.+.+ .
T Consensus         6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d-----~d~~~~-~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~-~   76 (106)
T cd03111           6 GAKGGVGATTLAANLAVALAKEAGRRVLLVD-----LDLQFG-DDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQD-L   76 (106)
T ss_pred             CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEE-----CCCCCC-CCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCC-h
Confidence            4567899999876655432211011111111     111111 17899999985432  3345678899999998864 4


Q ss_pred             hhHHHHHHHHHHHHhhcCC-CCcEEEEEeC
Q 027856           99 VTFENVERWLKELRDHTDS-NIVIMLVGNK  127 (217)
Q Consensus        99 ~s~~~~~~~~~~l~~~~~~-~~p~ivv~nK  127 (217)
                      .+...+..+++.+...... ...+.+|+|+
T Consensus        77 ~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          77 PSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            4556666677766655433 4456677775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.60  E-value=0.0018  Score=50.18  Aligned_cols=134  Identities=17%  Similarity=0.154  Sum_probs=70.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCC---------------------CCcccceeEeEEEEEE---------E-CCeEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSL---------------------ESKSTIGVEFATRSIR---------C-DDKIV   62 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~---------~-~~~~~   62 (217)
                      -+|+++|++|+||||++..+.......                     .+....+.......-.         . ....+
T Consensus        76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~  155 (270)
T PRK06731         76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV  155 (270)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence            689999999999999988775531100                     0000111111110000         0 01136


Q ss_pred             EEEEEeCCChhhhh----hhhhhhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC
Q 027856           63 KAQIWDTAGQERYR----AITSAYY--RGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV  136 (217)
Q Consensus        63 ~~~l~Dt~G~~~~~----~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~  136 (217)
                      .+.++||+|.....    ..+..++  ...+-+++|+|++...  +++..++..+..    -.+--+|+||.|...    
T Consensus       156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~----~~~~~~I~TKlDet~----  225 (270)
T PRK06731        156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD----IHIDGIVFTKFDETA----  225 (270)
T ss_pred             CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCC----CCCCEEEEEeecCCC----
Confidence            88999999954211    1111122  2456788999986432  222333333332    122357899999754    


Q ss_pred             CHHHHHHHHHHcCCcEEEEec
Q 027856          137 STEDATAFAERENTFFMETSA  157 (217)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~Sa  157 (217)
                      ..-.+...+...+.++..++.
T Consensus       226 ~~G~~l~~~~~~~~Pi~~it~  246 (270)
T PRK06731        226 SSGELLKIPAVSSAPIVLMTD  246 (270)
T ss_pred             CccHHHHHHHHHCcCEEEEeC
Confidence            233355666677777666554

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.59  E-value=0.00082  Score=46.48  Aligned_cols=26  Identities=27%  Similarity=0.460  Sum_probs=22.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~   38 (217)
                      .-.+++.|++|+|||+|++.+.....
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~~   44 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANELF   44 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence            34689999999999999999887654

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.54  E-value=0.00096  Score=53.65  Aligned_cols=21  Identities=29%  Similarity=0.572  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 027856           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .++.|.-|+|||||+++++..
T Consensus         7 ~iltGFLGaGKTTll~~ll~~   27 (341)
T TIGR02475         7 TIVTGFLGAGKTTLIRHLLQN   27 (341)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            578899999999999999864

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.52  E-value=8.8e-05  Score=50.22  Aligned_cols=22  Identities=27%  Similarity=0.554  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .|+|.|.+||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999865

...

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.48  E-value=9.8e-05  Score=53.65  Aligned_cols=23  Identities=26%  Similarity=0.754  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ++|+|+|+|||||||+.+.|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999999987

>PRK07261 topology modulation protein; Provisional

Probab=97.48  E-value=0.0001  Score=53.34  Aligned_cols=23  Identities=39%  Similarity=0.730  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .+|+|+|.+|+|||||.+.|...
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            37999999999999999998654

>PRK08118 topology modulation protein; Reviewed

Probab=97.47  E-value=0.00011  Score=52.98  Aligned_cols=24  Identities=38%  Similarity=0.599  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .+|+|+|++|||||||.+.|....
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l   25 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKL   25 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            489999999999999999988654

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.44  E-value=0.0034  Score=45.64  Aligned_cols=88  Identities=18%  Similarity=0.124  Sum_probs=47.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEE--EeCCC-hhhhhhhhhhhhcCCcEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQI--WDTAG-QERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~Dt~G-~~~~~~~~~~~~~~~d~ii   90 (217)
                      =.++++|+.|+|||||++.+.+...+...           .+.+++..+.+..  .+.+| +.....+...++.+.++++
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-----------~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lll   94 (177)
T cd03222          26 EVIGIVGPNGTGKTTAVKILAGQLIPNGD-----------NDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYL   94 (177)
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCCCCCc-----------EEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence            36899999999999999998876532221           1112222111111  11444 3334456667777776555


Q ss_pred             EE--EECCChhhHHHHHHHHHHHH
Q 027856           91 LV--YDVTRHVTFENVERWLKELR  112 (217)
Q Consensus        91 ~v--~d~~~~~s~~~~~~~~~~l~  112 (217)
                      +=  .+.-|+.+.+.+..++..+.
T Consensus        95 LDEPts~LD~~~~~~l~~~l~~~~  118 (177)
T cd03222          95 FDEPSAYLDIEQRLNAARAIRRLS  118 (177)
T ss_pred             EECCcccCCHHHHHHHHHHHHHHH
Confidence            41  11223444454555555543

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.43  E-value=0.00028  Score=52.65  Aligned_cols=31  Identities=32%  Similarity=0.443  Sum_probs=25.1

Q ss_pred             CCCCCeeeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856            7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus         7 ~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -++.....-|+|+|++|||||||++.|....
T Consensus         7 ~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~~   37 (206)
T PRK14738          7 FNKPAKPLLVVISGPSGVGKDAVLARMRERK   37 (206)
T ss_pred             cCCCCCCeEEEEECcCCCCHHHHHHHHHhcC
Confidence            3455566778899999999999999997653

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.42  E-value=0.00087  Score=46.14  Aligned_cols=24  Identities=33%  Similarity=0.497  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      --|++.|+.|+|||||++.+....
T Consensus        23 ~~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        23 TVVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHc
Confidence            358999999999999999988764

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=97.42  E-value=0.0005  Score=52.39  Aligned_cols=23  Identities=39%  Similarity=0.471  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -++++|+.|+|||||++.++|-.
T Consensus        32 ~~~iiGPNGaGKSTLlK~iLGll   54 (254)
T COG1121          32 ITALIGPNGAGKSTLLKAILGLL   54 (254)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            36899999999999999999943

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=97.42  E-value=0.00029  Score=56.51  Aligned_cols=158  Identities=17%  Similarity=0.113  Sum_probs=92.1

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcC-------------------CCCC----c------ccceeEeEEEEEEECCe
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEF-------------------SLES----K------STIGVEFATRSIRCDDK   60 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~-------------------~~~~----~------~~~~~~~~~~~~~~~~~   60 (217)
                      ....+++.++|+-.+||||+-..++...-                   ...|    .      ..-+-+.......+.-.
T Consensus        76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte  155 (501)
T KOG0459|consen   76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE  155 (501)
T ss_pred             CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence            35579999999999999998776554200                   0000    0      01112222222223333


Q ss_pred             EEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChh---hHHHHHHHH--HHHHhhcCCCCcEEEEEeCCCCCCcc-
Q 027856           61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV---TFENVERWL--KELRDHTDSNIVIMLVGNKADLRHLR-  134 (217)
Q Consensus        61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~~~~--~~l~~~~~~~~p~ivv~nK~D~~~~~-  134 (217)
                      .-.+++.|+||+..|....-.-..++|..++|+++...+   .|+.--+..  ..+... ..-...|+++||+|-...+ 
T Consensus       156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt-~gv~~lVv~vNKMddPtvnW  234 (501)
T KOG0459|consen  156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AGVKHLIVLINKMDDPTVNW  234 (501)
T ss_pred             ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHh-hccceEEEEEEeccCCccCc
Confidence            458899999999988877777778899999998885422   122211111  111111 1235578899999975422 


Q ss_pred             -CCCHHHH----HHHHHHcC------CcEEEEecCCCCCHHHHHH
Q 027856          135 -AVSTEDA----TAFAEREN------TFFMETSALESMNVENAFT  168 (217)
Q Consensus       135 -~~~~~~~----~~~~~~~~------~~~~~~Sa~~~~~i~~~~~  168 (217)
                       ....++.    ..+.+..+      ..++++|..+|.++.+.-+
T Consensus       235 s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  235 SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence             1122222    23333222      3499999999999887654

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=97.42  E-value=0.0044  Score=44.77  Aligned_cols=84  Identities=13%  Similarity=0.008  Sum_probs=50.7

Q ss_pred             EEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHH
Q 027856           63 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAT  142 (217)
Q Consensus        63 ~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~  142 (217)
                      .+.++|+|+....  .....+..+|.++++++.+.. +...+..+++.+...  ......+++|+.+....  ...+...
T Consensus        64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~~~~~--~~~~~~iv~N~~~~~~~--~~~~~~~  136 (179)
T cd02036          64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEIS-SLRDADRVKGLLEAL--GIKVVGVIVNRVRPDMV--EGGDMVE  136 (179)
T ss_pred             CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcc-hHHHHHHHHHHHHHc--CCceEEEEEeCCccccc--chhhHHH
Confidence            6899999985332  234456789999999887643 444455555655542  13456789999986432  1122233


Q ss_pred             HHHHHcCCcEE
Q 027856          143 AFAERENTFFM  153 (217)
Q Consensus       143 ~~~~~~~~~~~  153 (217)
                      .+.+..+.+++
T Consensus       137 ~~~~~~~~~v~  147 (179)
T cd02036         137 DIEEILGVPLL  147 (179)
T ss_pred             HHHHHhCCCEE
Confidence            44444565544

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=97.42  E-value=0.012  Score=42.06  Aligned_cols=143  Identities=10%  Similarity=0.060  Sum_probs=97.2

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      +....-.|+++|..+.++..|..+++.....      .     ...++.... ..     .|.  +    ....=..+|.
T Consensus        11 p~ln~atiLLVg~e~~~~~~LA~a~l~~~~~------~-----~l~Vh~a~s-LP-----Lp~--e----~~~lRprIDl   67 (176)
T PF11111_consen   11 PELNTATILLVGTEEALLQQLAEAMLEEDKE------F-----KLKVHLAKS-LP-----LPS--E----NNNLRPRIDL   67 (176)
T ss_pred             CCcceeEEEEecccHHHHHHHHHHHHhhccc------e-----eEEEEEecc-CC-----Ccc--c----ccCCCceeEE
Confidence            4456789999999999999999999863211      1     111111000 00     011  0    1112356899


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 027856           89 ALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFT  168 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  168 (217)
                      |+|++|.....|++.++.-+..+....--++-++++.| ....+.-.+...+..+++..+.++++.+.-....+...+-+
T Consensus        68 IVFvinl~sk~SL~~ve~SL~~vd~~fflGKVCfl~t~-a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lAq  146 (176)
T PF11111_consen   68 IVFVINLHSKYSLQSVEASLSHVDPSFFLGKVCFLATN-AGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLAQ  146 (176)
T ss_pred             EEEEEecCCcccHHHHHHHHhhCChhhhccceEEEEcC-CCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHHH
Confidence            99999999999999988877777655444665555544 44444356788999999999999999999888877777777


Q ss_pred             HHHHHHH
Q 027856          169 EVLTQIY  175 (217)
Q Consensus       169 ~i~~~~~  175 (217)
                      .+++.+.
T Consensus       147 RLL~~lq  153 (176)
T PF11111_consen  147 RLLRMLQ  153 (176)
T ss_pred             HHHHHHH
Confidence            7776554

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.40  E-value=0.0016  Score=50.90  Aligned_cols=107  Identities=16%  Similarity=0.222  Sum_probs=63.2

Q ss_pred             CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh---------------
Q 027856            8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ---------------   72 (217)
Q Consensus         8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~---------------   72 (217)
                      ++.....+++++|++|.|||+++++|...+..... ..             ...+.+..+.+|..               
T Consensus        56 P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d-~~-------------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lg  121 (302)
T PF05621_consen   56 PKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSD-ED-------------AERIPVVYVQMPPEPDERRFYSAILEALG  121 (302)
T ss_pred             CcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCC-CC-------------CccccEEEEecCCCCChHHHHHHHHHHhC
Confidence            45566788999999999999999999987643221 11             11235556666551               


Q ss_pred             ---------hhhhhhhhhhhcCCcEEEEEEECC-C--hhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCC
Q 027856           73 ---------ERYRAITSAYYRGAVGALLVYDVT-R--HVTFENVERWLKELRDHTD-SNIVIMLVGNKA  128 (217)
Q Consensus        73 ---------~~~~~~~~~~~~~~d~ii~v~d~~-~--~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~  128 (217)
                               ..........++...+=++++|-- +  ..+....+.+++.+..... -.+|++.|+++-
T Consensus       122 aP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~  190 (302)
T PF05621_consen  122 APYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE  190 (302)
T ss_pred             cccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence                     111222334566777778888843 2  1233333444444443322 378888888753

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.39  E-value=0.00014  Score=50.75  Aligned_cols=22  Identities=36%  Similarity=0.665  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCc
Q 027856           16 VVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      |+++|+||||||||++.+....
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~~   23 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKRL   23 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHHC
Confidence            7899999999999999988443

...

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.38  E-value=0.00078  Score=54.77  Aligned_cols=115  Identities=17%  Similarity=0.149  Sum_probs=61.4

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCC----------CCCcc-----------cceeEeEEEEEEE-----------
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFS----------LESKS-----------TIGVEFATRSIRC-----------   57 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~----------~~~~~-----------~~~~~~~~~~~~~-----------   57 (217)
                      ...+..|+++|..|+||||.+-.|......          ..|.|           ..+.+++......           
T Consensus        97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~  176 (451)
T COG0541          97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE  176 (451)
T ss_pred             CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence            345788999999999999987765542110          01111           1112221110000           


Q ss_pred             --CCeEEEEEEEeCCChhhhhh-hhh-----hhhcCCcEEEEEEECCChhhHHHHHH-HHHHHHhhcCCCCcEEEEEeCC
Q 027856           58 --DDKIVKAQIWDTAGQERYRA-ITS-----AYYRGAVGALLVYDVTRHVTFENVER-WLKELRDHTDSNIVIMLVGNKA  128 (217)
Q Consensus        58 --~~~~~~~~l~Dt~G~~~~~~-~~~-----~~~~~~d~ii~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~ivv~nK~  128 (217)
                        ....+.+.|+||+|...... +..     .-.-+.|=+++|+|+.-.+.-..... +-+.+ ..      .-+|+||.
T Consensus       177 ~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l-~i------tGvIlTKl  249 (451)
T COG0541         177 KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEAL-GI------TGVILTKL  249 (451)
T ss_pred             HHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhc-CC------ceEEEEcc
Confidence              11125899999999432221 111     12246788999999987764433322 33332 22      14667777


Q ss_pred             CCC
Q 027856          129 DLR  131 (217)
Q Consensus       129 D~~  131 (217)
                      |-.
T Consensus       250 DGd  252 (451)
T COG0541         250 DGD  252 (451)
T ss_pred             cCC
Confidence            753

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.36  E-value=0.00022  Score=42.00  Aligned_cols=21  Identities=33%  Similarity=0.570  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 027856           15 KVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~   35 (217)
                      ..++.|+.|+|||||+.++.-
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998664

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.35  E-value=0.0023  Score=46.46  Aligned_cols=85  Identities=26%  Similarity=0.234  Sum_probs=59.3

Q ss_pred             eEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHH
Q 027856           60 KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTE  139 (217)
Q Consensus        60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~  139 (217)
                      ..+.+.++|||+....  .....+..+|.+++++..+.. +...+..+++.+...   +.++.+|+||.|....   ...
T Consensus        91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~~-~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~  161 (179)
T cd03110          91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTPS-GLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAE  161 (179)
T ss_pred             cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCcc-cHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHH
Confidence            4578999999975322  334466889999999998743 555566666666543   5678899999997432   345


Q ss_pred             HHHHHHHHcCCcEE
Q 027856          140 DATAFAERENTFFM  153 (217)
Q Consensus       140 ~~~~~~~~~~~~~~  153 (217)
                      ++.++.+..+++++
T Consensus       162 ~~~~~~~~~~~~vl  175 (179)
T cd03110         162 EIEDYCEEEGIPIL  175 (179)
T ss_pred             HHHHHHHHcCCCeE
Confidence            66777777777654

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.32  E-value=0.00025  Score=43.05  Aligned_cols=22  Identities=27%  Similarity=0.557  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCc
Q 027856           16 VVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      |++.|.+|+||||+.+.|...-
T Consensus         2 i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999988664

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.31  E-value=0.00037  Score=52.04  Aligned_cols=68  Identities=19%  Similarity=0.107  Sum_probs=36.9

Q ss_pred             EEEEEeCCChhhhhhh----h--hhhhcCCcEEEEE---EEC---CChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 027856           63 KAQIWDTAGQERYRAI----T--SAYYRGAVGALLV---YDV---TRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL  130 (217)
Q Consensus        63 ~~~l~Dt~G~~~~~~~----~--~~~~~~~d~ii~v---~d~---~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~  130 (217)
                      ...++|+||+.++...    +  ...+.+.+.=+.+   +|.   ++|..+-  ..++-.+.....-..|-+-|++|+|+
T Consensus        98 ~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~i--S~lL~sl~tMl~melphVNvlSK~Dl  175 (290)
T KOG1533|consen   98 HYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFI--SSLLVSLATMLHMELPHVNVLSKADL  175 (290)
T ss_pred             cEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHH--HHHHHHHHHHHhhcccchhhhhHhHH
Confidence            6789999997543211    1  1122334443333   332   3555443  23333333333347888899999998


Q ss_pred             CC
Q 027856          131 RH  132 (217)
Q Consensus       131 ~~  132 (217)
                      ..
T Consensus       176 ~~  177 (290)
T KOG1533|consen  176 LK  177 (290)
T ss_pred             HH
Confidence            53

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.30  E-value=0.0002  Score=54.00  Aligned_cols=23  Identities=43%  Similarity=0.577  Sum_probs=20.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCcC
Q 027856           16 VVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~~~   38 (217)
                      |+++|++|||||||++-+.|-..
T Consensus        32 vsilGpSGcGKSTLLriiAGL~~   54 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAGLEK   54 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            78999999999999999888654

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.26  E-value=0.00018  Score=51.56  Aligned_cols=22  Identities=23%  Similarity=0.597  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999866

>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=97.25  E-value=0.0002  Score=61.97  Aligned_cols=123  Identities=15%  Similarity=0.168  Sum_probs=77.6

Q ss_pred             CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeE--------------------------------------
Q 027856            8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVE--------------------------------------   49 (217)
Q Consensus         8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--------------------------------------   49 (217)
                      ......+.|+|+|..++||||.++.+.|..|.+......+-.                                      
T Consensus        24 ~~~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI  103 (657)
T KOG0446|consen   24 SSFIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEI  103 (657)
T ss_pred             CCcccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhccccccccccCCHHHHHHHH
Confidence            345667899999999999999999999966533221110000                                      


Q ss_pred             ---------------eEEEEEEE-CCeEEEEEEEeCCCh-------------hhhhhhhhhhhcCCcEEEEEEECCChhh
Q 027856           50 ---------------FATRSIRC-DDKIVKAQIWDTAGQ-------------ERYRAITSAYYRGAVGALLVYDVTRHVT  100 (217)
Q Consensus        50 ---------------~~~~~~~~-~~~~~~~~l~Dt~G~-------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s  100 (217)
                                     ....++.+ .-.-..++++|.||.             .....+...++...+.+|+.+...+-+ 
T Consensus       104 ~~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d-  182 (657)
T KOG0446|consen  104 RSETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSD-  182 (657)
T ss_pred             HhhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhh-
Confidence                           00111111 011136789999992             234556677888888888887766522 


Q ss_pred             HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856          101 FENVERWLKELRDHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus       101 ~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  132 (217)
                      +. -..++....+....+..++-|++|.|+.+
T Consensus       183 ~a-ts~alkiarevDp~g~RTigvitK~Dlmd  213 (657)
T KOG0446|consen  183 IA-TSPALVVAREVDPGGSRTLEVITKFDFMD  213 (657)
T ss_pred             hh-cCHHHHHHHhhCCCccchhHHhhhHHhhh
Confidence            11 13456666666666778888899999865

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.23  E-value=0.0019  Score=47.83  Aligned_cols=22  Identities=32%  Similarity=0.481  Sum_probs=19.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCc
Q 027856           16 VVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      |+|+|++||||||+++.+++..
T Consensus         4 ilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999987754

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.22  E-value=0.0003  Score=48.69  Aligned_cols=24  Identities=33%  Similarity=0.441  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~   38 (217)
                      .++|+|+.|+|||||++.+.+...
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~~   36 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLLP   36 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSSH
T ss_pred             EEEEEccCCCccccceeeeccccc
Confidence            579999999999999999887653

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK10646 ADP-binding protein; Provisional

Probab=97.20  E-value=0.0035  Score=44.18  Aligned_cols=23  Identities=30%  Similarity=0.495  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -|++-|+-|+|||||++.+....
T Consensus        30 vi~L~GdLGaGKTtf~rgl~~~L   52 (153)
T PRK10646         30 VIYLYGDLGAGKTTFSRGFLQAL   52 (153)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            48899999999999999987653

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.19  E-value=0.0051  Score=51.55  Aligned_cols=22  Identities=32%  Similarity=0.563  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCc
Q 027856           16 VVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .++.|++||||||-++.|....
T Consensus       113 LLltGPsGcGKSTtvkvLskel  134 (634)
T KOG1970|consen  113 LLLTGPSGCGKSTTVKVLSKEL  134 (634)
T ss_pred             EEEeCCCCCCchhHHHHHHHhh
Confidence            5788999999999999888643

>PRK06217 hypothetical protein; Validated

Probab=97.17  E-value=0.00039  Score=50.82  Aligned_cols=24  Identities=21%  Similarity=0.432  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .+|+|+|.+|||||||.++|....
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~l   25 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAERL   25 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc
Confidence            579999999999999999988653

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=97.17  E-value=0.0042  Score=50.91  Aligned_cols=28  Identities=32%  Similarity=0.460  Sum_probs=23.8

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcC
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~   38 (217)
                      +..-+|+|||+.|+|||||+.-|++..-
T Consensus       611 DmdSRiaIVGPNGVGKSTlLkLL~Gkl~  638 (807)
T KOG0066|consen  611 DMDSRIAIVGPNGVGKSTLLKLLIGKLD  638 (807)
T ss_pred             cccceeEEECCCCccHHHHHHHHhcCCC
Confidence            3456899999999999999999988643

>PRK01889 GTPase RsgA; Reviewed

Probab=97.16  E-value=0.00048  Score=55.71  Aligned_cols=25  Identities=44%  Similarity=0.658  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~   38 (217)
                      -.++++|.+|+|||||++.+++...
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~~  220 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEEV  220 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhcc
Confidence            4789999999999999999998643

>PRK04195 replication factor C large subunit; Provisional

Probab=97.16  E-value=0.012  Score=49.82  Aligned_cols=25  Identities=28%  Similarity=0.454  Sum_probs=21.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .-.+++.|++|+||||+++.+....
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el   63 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDY   63 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHc
Confidence            4568999999999999999998754

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.16  E-value=0.0094  Score=41.74  Aligned_cols=66  Identities=21%  Similarity=0.218  Sum_probs=38.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChh-hhhhhhhhhhcCCcEEEE
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE-RYRAITSAYYRGAVGALL   91 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-~~~~~~~~~~~~~d~ii~   91 (217)
                      .++++|+.|+|||||++.+.+...+.     .|      .+.+++...-..+...++.+ ..-.+...++.+.+++++
T Consensus        28 ~~~i~G~nGsGKStLl~~l~G~~~~~-----~G------~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illl   94 (144)
T cd03221          28 RIGLVGRNGAGKSTLLKLIAGELEPD-----EG------IVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLL   94 (144)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCCCC-----ce------EEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            56899999999999999998865321     11      12223321111122244433 333556667777765444

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.15  E-value=0.00026  Score=51.03  Aligned_cols=25  Identities=40%  Similarity=0.615  Sum_probs=22.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      ..-+++.|++|+|||||+++|+...
T Consensus         4 G~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           4 GLLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhc
Confidence            3458999999999999999999876

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.15  E-value=0.00037  Score=52.27  Aligned_cols=24  Identities=38%  Similarity=0.491  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~   38 (217)
                      -++|+|++|||||||++-+-+-..
T Consensus        33 ~vaI~GpSGSGKSTLLniig~ld~   56 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGLDK   56 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhcccC
Confidence            379999999999999998776543

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=97.14  E-value=0.0027  Score=44.25  Aligned_cols=25  Identities=32%  Similarity=0.404  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~   38 (217)
                      --|++-|+-|+|||||.+.+...--
T Consensus        26 ~Vv~L~GdLGAGKTtf~rgi~~~Lg   50 (149)
T COG0802          26 DVVLLSGDLGAGKTTLVRGIAKGLG   50 (149)
T ss_pred             CEEEEEcCCcCChHHHHHHHHHHcC
Confidence            3478999999999999999887644

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.13  E-value=0.00041  Score=47.27  Aligned_cols=22  Identities=18%  Similarity=0.365  Sum_probs=19.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCc
Q 027856           16 VVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      |+|.|.+||||||+++.|....
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999988763

...

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.13  E-value=0.0004  Score=50.93  Aligned_cols=24  Identities=17%  Similarity=0.290  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .=|+|+|++|||||||+++|+...
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhcC
Confidence            448999999999999999998764

>PRK03839 putative kinase; Provisional

Probab=97.12  E-value=0.00043  Score=50.43  Aligned_cols=22  Identities=23%  Similarity=0.508  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      +|+++|.|||||||+.++|...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999988765

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=97.12  E-value=0.0013  Score=44.57  Aligned_cols=77  Identities=14%  Similarity=0.162  Sum_probs=37.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcC--CCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEF--SLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      --|++-|+-|+|||||++.+....-  ....+||...-.....  -...-+.+-++=..+.++.......-+-..+++++
T Consensus        16 ~vi~L~GdLGaGKTtf~r~l~~~lg~~~~V~SPTF~l~~~Y~~--~~~~l~H~DLYRl~~~~e~~~~g~~e~~~~~~i~~   93 (123)
T PF02367_consen   16 DVILLSGDLGAGKTTFVRGLARALGIDEEVTSPTFSLVNEYEG--GNIPLYHFDLYRLEDPEELEDLGLEEYLFEDGICV   93 (123)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTT--S----TTTTSEEEEEE--TTEEEEEEE-TT-SSTHHHHHCTTTTCSSSSEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCCCCcCCCCeEEEEEecC--CCceEEEeeccccCCHHHHHHCCchhhhCCCCEEE
Confidence            3489999999999999998876432  1334455443221111  11222344444444444433332122222355655


Q ss_pred             E
Q 027856           92 V   92 (217)
Q Consensus        92 v   92 (217)
                      |
T Consensus        94 I   94 (123)
T PF02367_consen   94 I   94 (123)
T ss_dssp             E
T ss_pred             E
Confidence            5

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.12  E-value=0.00048  Score=48.05  Aligned_cols=24  Identities=21%  Similarity=0.392  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~   38 (217)
                      .|+|+|+.|+|||||++.|++...
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~l~   25 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINELK   25 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            589999999999999999987653

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.11  E-value=0.00046  Score=48.00  Aligned_cols=21  Identities=57%  Similarity=0.858  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 027856           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~   36 (217)
                      |+++|++|+|||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999875

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.10  E-value=0.00061  Score=50.42  Aligned_cols=24  Identities=50%  Similarity=0.582  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~   38 (217)
                      .++++|++|||||||++.+.+-..
T Consensus        30 vv~iiGpSGSGKSTlLRclN~LE~   53 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLNGLEE   53 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCcC
Confidence            479999999999999998876553

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.09  E-value=0.0005  Score=47.02  Aligned_cols=22  Identities=27%  Similarity=0.505  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCc
Q 027856           16 VVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      |++.|++|+|||++++.+....
T Consensus         1 ill~G~~G~GKT~l~~~la~~l   22 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL   22 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT
T ss_pred             CEEECcCCCCeeHHHHHHHhhc
Confidence            6899999999999999988654

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.09  E-value=0.00055  Score=46.95  Aligned_cols=28  Identities=21%  Similarity=0.339  Sum_probs=23.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLE   41 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~   41 (217)
                      -.++++|++|+|||+++..+........
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~   30 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGPPG   30 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCCCC
Confidence            4689999999999999999987765443

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.08  E-value=0.0049  Score=52.27  Aligned_cols=23  Identities=26%  Similarity=0.485  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      =+++.|++|+||||.++.|....
T Consensus        47 iLlLtGP~G~GKtttv~~La~el   69 (519)
T PF03215_consen   47 ILLLTGPSGCGKTTTVKVLAKEL   69 (519)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            45779999999999999888653

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.07  E-value=0.0038  Score=44.32  Aligned_cols=24  Identities=38%  Similarity=0.439  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -.++++|+.|+|||||++.+.+..
T Consensus        26 ~~~~i~G~nGsGKStll~~l~g~~   49 (157)
T cd00267          26 EIVALVGPNGSGKSTLLRAIAGLL   49 (157)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            367899999999999999998765

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.06  E-value=0.00056  Score=51.88  Aligned_cols=27  Identities=33%  Similarity=0.591  Sum_probs=23.5

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      -+..++++|+|.+|||||+|+..++..
T Consensus        10 ~~~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   10 LKDPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             cCCCceEEEECCCCCCHHHHHHHHHHh
Confidence            455789999999999999999988854

This is thought to be an ATPase involved in viral DNA packaging [].

>PRK14530 adenylate kinase; Provisional

Probab=97.04  E-value=0.00057  Score=51.30  Aligned_cols=23  Identities=26%  Similarity=0.543  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .+|+|+|+|||||||+.+.|...
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~~   26 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAEE   26 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999988753

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=97.04  E-value=0.0081  Score=49.70  Aligned_cols=52  Identities=25%  Similarity=0.319  Sum_probs=37.2

Q ss_pred             hhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 027856           77 AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKAD  129 (217)
Q Consensus        77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D  129 (217)
                      .+....|++++.+|+ =..+.--|..+++.++..+......++.+++|-.|.+
T Consensus       150 EIlKaLyr~a~iLIL-DEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~  201 (501)
T COG3845         150 EILKALYRGARLLIL-DEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK  201 (501)
T ss_pred             HHHHHHhcCCCEEEE-cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH
Confidence            456677888886554 1233334577788888888888778999999988865

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.03  E-value=0.0006  Score=49.97  Aligned_cols=23  Identities=39%  Similarity=0.660  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .|+++|++|+|||||++.|.+..
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            58999999999999999997653

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.03  E-value=0.00057  Score=49.69  Aligned_cols=23  Identities=30%  Similarity=0.457  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .|+|+|++|||||||++.|....
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~~   25 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARARL   25 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            47999999999999999987753

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>TIGR00235 udk uridine kinase

Probab=97.03  E-value=0.00081  Score=50.19  Aligned_cols=26  Identities=19%  Similarity=0.250  Sum_probs=22.3

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      +...-|+|+|++|||||||++.+.+.
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            34467999999999999999999875

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.02  E-value=0.016  Score=45.85  Aligned_cols=141  Identities=15%  Similarity=0.197  Sum_probs=75.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCc------c---------------cceeEeEEEE-------EEE------
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESK------S---------------TIGVEFATRS-------IRC------   57 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~------~---------------~~~~~~~~~~-------~~~------   57 (217)
                      .++-|+++|-.|+||||-|-.|..........      .               -.+.+.....       +-+      
T Consensus       138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~A  217 (340)
T COG0552         138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAA  217 (340)
T ss_pred             CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHH
Confidence            47889999999999999988766532111100      0               0111111110       000      


Q ss_pred             CCeEEEEEEEeCCCh--------hhhhhhhhhhhcCC-----cEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEE
Q 027856           58 DDKIVKAQIWDTAGQ--------ERYRAITSAYYRGA-----VGALLVYDVTRHV-TFENVERWLKELRDHTDSNIVIML  123 (217)
Q Consensus        58 ~~~~~~~~l~Dt~G~--------~~~~~~~~~~~~~~-----d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~iv  123 (217)
                      ....+.+.|+||+|.        ++...+.+ .....     +-+++++|+.... +++.++.+-+.+. .      --+
T Consensus       218 kar~~DvvliDTAGRLhnk~nLM~EL~KI~r-V~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~-l------~Gi  289 (340)
T COG0552         218 KARGIDVVLIDTAGRLHNKKNLMDELKKIVR-VIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVG-L------DGI  289 (340)
T ss_pred             HHcCCCEEEEeCcccccCchhHHHHHHHHHH-HhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcC-C------ceE
Confidence            112368999999993        22222221 22222     4488888988765 3444444333332 2      258


Q ss_pred             EEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856          124 VGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA  166 (217)
Q Consensus       124 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  166 (217)
                      |+||.|-...-.+    +...+...+.|+.++.-  |++++++
T Consensus       290 IlTKlDgtAKGG~----il~I~~~l~~PI~fiGv--GE~~~DL  326 (340)
T COG0552         290 ILTKLDGTAKGGI----ILSIAYELGIPIKFIGV--GEGYDDL  326 (340)
T ss_pred             EEEecccCCCcce----eeeHHHHhCCCEEEEeC--CCChhhc
Confidence            8999996432222    34466777888666653  3344444

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.01  E-value=0.00059  Score=50.51  Aligned_cols=22  Identities=23%  Similarity=0.425  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCc
Q 027856           16 VVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      |+|.|++|||||||++.|.+..
T Consensus         2 igi~G~~GsGKSTl~~~l~~~l   23 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQL   23 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999987754

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.01  E-value=0.00079  Score=50.29  Aligned_cols=26  Identities=23%  Similarity=0.294  Sum_probs=22.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      ....|+|.|.+|||||||.+.|.+.-
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~l   30 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEEL   30 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999988753

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=97.00  E-value=0.013  Score=46.02  Aligned_cols=21  Identities=38%  Similarity=0.439  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFT   34 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~   34 (217)
                      --|+|.|.+||||||+++.|-
T Consensus         7 ~~i~i~G~~GsGKtt~~~~l~   27 (288)
T PRK05416          7 RLVIVTGLSGAGKSVALRALE   27 (288)
T ss_pred             eEEEEECCCCCcHHHHHHHHH
Confidence            368999999999999999984

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.98  E-value=0.00071  Score=44.66  Aligned_cols=21  Identities=38%  Similarity=0.703  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFT   34 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~   34 (217)
                      --++++|++|+|||||++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            357999999999999999875

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=96.97  E-value=0.00058  Score=47.43  Aligned_cols=25  Identities=28%  Similarity=0.464  Sum_probs=22.5

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhh
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      ...++|+|.|.||+|||||..++..
T Consensus         5 r~~PNILvtGTPG~GKstl~~~lae   29 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLAE   29 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHHH
Confidence            4578999999999999999999884

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.97  E-value=0.0053  Score=43.96  Aligned_cols=24  Identities=29%  Similarity=0.426  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~   38 (217)
                      .++++|+.|+|||||++.+.+...
T Consensus        28 ~~~l~G~nGsGKSTLl~~i~G~~~   51 (163)
T cd03216          28 VHALLGENGAGKSTLMKILSGLYK   51 (163)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            678999999999999999988653

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.96  E-value=0.00077  Score=46.82  Aligned_cols=23  Identities=30%  Similarity=0.517  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .|+++|++|+|||+|++.+....
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~~   23 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAALL   23 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999877544

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>TIGR03263 guanyl_kin guanylate kinase

Probab=96.96  E-value=0.00069  Score=49.24  Aligned_cols=23  Identities=39%  Similarity=0.667  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -|+|+|++|||||||++.|.+..
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHccC
Confidence            47999999999999999998853

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.96  E-value=0.00077  Score=49.41  Aligned_cols=25  Identities=24%  Similarity=0.393  Sum_probs=21.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .-.++++|++|+|||||++.+++..
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3468999999999999999988754

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=96.96  E-value=0.0092  Score=44.89  Aligned_cols=102  Identities=12%  Similarity=0.083  Sum_probs=61.8

Q ss_pred             EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHH
Q 027856           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFEN--VERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTE  139 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~  139 (217)
                      +.+.|+|+.|.....  ....+..+|.+|+=.-.+..+.-+.  .-.|+..+.......+|.-|+.|++.-... .....
T Consensus        84 ~d~VlvDleG~as~~--~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~~-~~~~~  160 (231)
T PF07015_consen   84 FDFVLVDLEGGASEL--NDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAARL-TRAQR  160 (231)
T ss_pred             CCEEEEeCCCCCchh--HHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcchh-hHHHH
Confidence            578999999854332  3345567898888665554332222  234555555555678999999999874321 11112


Q ss_pred             HHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 027856          140 DATAFAERENTFFMETSALESMNVENAFT  168 (217)
Q Consensus       140 ~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  168 (217)
                      .+.++..  +++++.+.-....-+.++|.
T Consensus       161 ~~~e~~~--~lpvl~t~l~eR~Af~~m~~  187 (231)
T PF07015_consen  161 IISEQLE--SLPVLDTELHERDAFRAMFS  187 (231)
T ss_pred             HHHHHHh--cCCccccccccHHHHHHHHH
Confidence            2223332  47788888877666666665

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>PRK13949 shikimate kinase; Provisional

Probab=96.95  E-value=0.00083  Score=48.46  Aligned_cols=22  Identities=32%  Similarity=0.625  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      +|+|+|++|+||||+.+.|...
T Consensus         3 ~I~liG~~GsGKstl~~~La~~   24 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARE   24 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999987764

>PRK14532 adenylate kinase; Provisional

Probab=96.94  E-value=0.00077  Score=49.41  Aligned_cols=23  Identities=22%  Similarity=0.511  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ++|+++|+|||||||+..+|...
T Consensus         1 ~~i~~~G~pGsGKsT~a~~la~~   23 (188)
T PRK14532          1 MNLILFGPPAAGKGTQAKRLVEE   23 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999998754

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=96.94  E-value=0.00072  Score=48.17  Aligned_cols=21  Identities=24%  Similarity=0.536  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFT   34 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~   34 (217)
                      ++|+|.|.||+||||+.++|.
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~   21 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR   21 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH
Confidence            479999999999999999887

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=96.93  E-value=0.00084  Score=48.43  Aligned_cols=25  Identities=40%  Similarity=0.481  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~   38 (217)
                      =.++|+|++|+|||||+|-+.|=..
T Consensus        26 e~vAi~GpSGaGKSTLLnLIAGF~~   50 (231)
T COG3840          26 EIVAILGPSGAGKSTLLNLIAGFET   50 (231)
T ss_pred             cEEEEECCCCccHHHHHHHHHhccC
Confidence            3689999999999999998887554

>PRK08233 hypothetical protein; Provisional

Probab=96.92  E-value=0.00079  Score=48.92  Aligned_cols=24  Identities=29%  Similarity=0.353  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      +-|+|.|.+|||||||.++|....
T Consensus         4 ~iI~I~G~~GsGKtTla~~L~~~l   27 (182)
T PRK08233          4 KIITIAAVSGGGKTTLTERLTHKL   27 (182)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhC
Confidence            668899999999999999998653

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=96.92  E-value=0.00076  Score=49.28  Aligned_cols=22  Identities=18%  Similarity=0.430  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      .-|+++|.+||||||+++.+..
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999884

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.92  E-value=0.00078  Score=50.48  Aligned_cols=21  Identities=48%  Similarity=0.719  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 027856           15 KVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~   35 (217)
                      -|+++|++|+|||||++.+.+
T Consensus        32 ~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          32 MVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            489999999999999999887

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	217
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		7e-81
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		4e-79
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		1e-78
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		2e-78
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		4e-78
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		4e-77
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		6e-76
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		2e-72
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		1e-68
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		6e-64
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		2e-63
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		4e-63
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		1e-47
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		2e-47
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		3e-47
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		3e-46
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		4e-45
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		6e-45
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		8e-44
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		6e-43
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		8e-43
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		1e-42
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		1e-42
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		2e-42
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		2e-42
4fmc_B	171	Espg-Rab1 Complex Length = 171		3e-42
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		5e-42
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		5e-42
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		6e-42
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		7e-42
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		3e-41
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		3e-41
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		3e-41
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		5e-41
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		1e-40
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		2e-40
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		4e-40
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		6e-40
2efc_B	181	Ara7-GdpATVPS9A Length = 181		9e-40
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		1e-39
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		2e-39
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		3e-39
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		3e-39
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		3e-39
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		4e-39
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		6e-39
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		7e-39
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		8e-39
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		1e-38
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		1e-38
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		2e-38
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		2e-38
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		5e-38
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		7e-38
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		1e-37
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		1e-37
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		1e-36
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		2e-36
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		2e-36
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		4e-36
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		4e-36
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		5e-36
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		8e-36
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		1e-35
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		2e-35
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		6e-35
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		2e-34
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		1e-33
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		5e-33
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		1e-32
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		3e-32
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		3e-32
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		3e-32
1vg1_A	185	Gdp-bound Rab7 Length = 185		4e-32
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		9e-32
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		9e-32
4fmc_F	117	Espg-Rab1 Complex Length = 117		1e-31
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		1e-31
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		1e-31
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		1e-31
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		2e-31
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		2e-31
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		2e-31
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		3e-31
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		3e-31
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		3e-31
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		5e-31
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		7e-31
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		3e-30
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		3e-30
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		3e-30
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		3e-30
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		3e-30
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		3e-30
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		4e-30
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		9e-29
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		2e-28
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		1e-27
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		1e-27
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		1e-25
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		2e-22
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		2e-22
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		4e-22
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		5e-22
1byu_A	216	Canine Gdp-Ran Length = 216		5e-22
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		5e-22
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		5e-22
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		5e-22
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		5e-22
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		9e-22
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		9e-22
2bku_A	177	Kap95p:rangtp Complex Length = 177		2e-21
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		2e-21
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		4e-21
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		6e-21
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		6e-21
3icq_B	171	Karyopherin Nuclear State Length = 171		6e-21
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		6e-21
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		7e-21
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		9e-21
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		9e-21
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		1e-20
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		3e-20
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		9e-20
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		9e-20
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		2e-18
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		2e-18
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		2e-17
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		4e-17
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		6e-17
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		7e-17
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		8e-17
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		1e-16
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		1e-16
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		1e-16
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		1e-16
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		2e-16
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-16
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		2e-16
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		3e-16
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		3e-16
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		4e-16
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		6e-16
1mh1_A	186	Small G-Protein Length = 186		6e-16
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		6e-16
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		8e-16
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		8e-16
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		8e-16
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		8e-16
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		1e-15
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		1e-15
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		2e-15
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		2e-15
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		2e-15
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		2e-15
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		2e-15
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		2e-15
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		2e-15
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		2e-15
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		2e-15
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		3e-15
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		3e-15
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		3e-15
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		3e-15
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		3e-15
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		4e-15
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		5e-15
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		7e-15
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		7e-15
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		7e-15
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		8e-15
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		8e-15
1s1c_A	183	Crystal Structure Of The Complex Between The Human		8e-15
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		9e-15
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		9e-15
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		9e-15
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		1e-14
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		1e-14
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		1e-14
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		1e-14
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		1e-14
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		1e-14
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		2e-14
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		2e-14
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		2e-14
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		2e-14
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		3e-14
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		3e-14
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		9e-14
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		1e-13
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		1e-13
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		1e-13
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		1e-13
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		1e-13
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		2e-13
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		2e-13
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		2e-13
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		3e-13
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		3e-13
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		3e-13
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		3e-13
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		4e-13
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		4e-13
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		8e-13
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		8e-13
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		1e-12
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		2e-12
4q21_A	189	Molecular Switch For Signal Transduction: Structura		2e-12
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-12
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-12
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		3e-12
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		3e-12
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		3e-12
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		3e-12
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		3e-12
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		3e-12
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		3e-12
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		3e-12
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		3e-12
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		4e-12
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		4e-12
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		4e-12
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		4e-12
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		4e-12
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		4e-12
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		4e-12
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		4e-12
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		4e-12
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		4e-12
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		4e-12
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		4e-12
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		5e-12
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		5e-12
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		5e-12
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		5e-12
6q21_A	171	Molecular Switch For Signal Transduction: Structura		6e-12
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		6e-12
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		6e-12
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		6e-12
1wq1_R	166	Ras-Rasgap Complex Length = 166		6e-12
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		6e-12
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		7e-12
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		8e-12
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		8e-12
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		9e-12
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		1e-11
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		1e-11
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		1e-11
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		1e-11
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		1e-11
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		1e-11
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		1e-11
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		1e-11
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		2e-11
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		2e-11
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		2e-11
2kb0_A	178	Cdc42(T35a) Length = 178		2e-11
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		2e-11
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		2e-11
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		2e-11
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		2e-11
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-11
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		2e-11
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-11
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		3e-11
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		3e-11
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		4e-11
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		5e-11
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		5e-11
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		5e-11
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		6e-11
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		6e-11
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		6e-11
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		6e-11
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		7e-11
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		8e-11
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		1e-10
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		1e-10
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		1e-10
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		1e-10
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		1e-10
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		2e-10
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		2e-10
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		3e-10
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		3e-10
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		5e-10
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		1e-08
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		7e-08
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		2e-07
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		9e-07
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		7e-06
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		1e-05
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		1e-05
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		2e-05
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		2e-05
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		4e-05
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		4e-05
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		4e-05
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		4e-05
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		5e-05
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		5e-05
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		6e-05
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		7e-05
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		8e-05
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		2e-04
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		2e-04
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		3e-04
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		3e-04
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		3e-04
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		4e-04
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		7e-04
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		7e-04
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		7e-04
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		8e-04
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		8e-04
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		8e-04
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		9e-04

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  296 bits (757), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 140/174 (80%), Positives = 158/174 (90%)
Query: 10  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDT 69
           YDYLFKVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRSI+ D K +KAQIWDT
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKAD 129
           AGQERYR ITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH DSNIVIMLVGNK+D
Sbjct: 62  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 121
Query: 130 LRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKAL 183
           LRHLRAV T++A AFAE+ N  F+ETSAL+S NVE AF  +LT+IYR+VS+K +
Sbjct: 122 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 175

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  290 bits (742), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 138/169 (81%), Positives = 154/169 (91%)
Query: 7   DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQI 66
           DD+YDYLFKVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRSI+ D K +KAQI
Sbjct: 23  DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 82
Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGN 126
           WDTAGQERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH DSNIVIMLVGN
Sbjct: 83  WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 142
Query: 127 KADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
           K+DLRHLRAV T++A AFAE+    F+ETSAL+S NVE AF  +LT+IY
Sbjct: 143 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  288 bits (738), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 137/168 (81%), Positives = 153/168 (91%)
Query: 10  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDT 69
           YDYLFKVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRSI+ D K +KAQIWDT
Sbjct: 17  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 76
Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKAD 129
           AGQERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH DSNIVIMLVGNK+D
Sbjct: 77  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 136
Query: 130 LRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRV 177
           LRHLRAV T++A AFAE+    F+ETSAL+S NVE AF  +LT+IYR+
Sbjct: 137 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 184

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  288 bits (736), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 137/170 (80%), Positives = 154/170 (90%)
Query: 8   DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIW 67
           D+YDYLFKVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRSI+ D K +KAQIW
Sbjct: 3   DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 62
Query: 68  DTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNK 127
           DTAG ERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH DSNIVIMLVGNK
Sbjct: 63  DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 122
Query: 128 ADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRV 177
           +DLRHLRAV T++A AFAE+    F+ETSAL+S NVE AF  +LT+IYR+
Sbjct: 123 SDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 172

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  286 bits (733), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 137/169 (81%), Positives = 153/169 (90%)
Query: 7   DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQI 66
           DD+YDYLFKVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRSI+ D K +KAQI
Sbjct: 23  DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 82
Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGN 126
           WDTAG ERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH DSNIVIMLVGN
Sbjct: 83  WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 142
Query: 127 KADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
           K+DLRHLRAV T++A AFAE+    F+ETSAL+S NVE AF  +LT+IY
Sbjct: 143 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  283 bits (725), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 136/169 (80%), Positives = 152/169 (89%)
Query: 7   DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQI 66
           DD+YDYLFKVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRSI+ D K +KAQI
Sbjct: 5   DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 64
Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGN 126
           WDTAG ERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH DSNIVI LVGN
Sbjct: 65  WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGN 124
Query: 127 KADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
           K+DLRHLRAV T++A AFAE+    F+ETSAL+S NVE AF  +LT+IY
Sbjct: 125 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  280 bits (715), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 134/167 (80%), Positives = 150/167 (89%)
Query: 9   DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWD 68
           +YDYLFKVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRSI+ D K +KAQIWD
Sbjct: 1   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 60
Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKA 128
           TAG ERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH DSNIVI LVGNK+
Sbjct: 61  TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKS 120
Query: 129 DLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
           DLRHLRAV T++A AFAE+    F+ETSAL+S NVE AF  +LT+IY
Sbjct: 121 DLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 167

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  268 bits (684), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 127/175 (72%), Positives = 155/175 (88%), Gaps = 1/175 (0%)
Query: 8   DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRC-DDKIVKAQI 66
           D YDYLFK+VLIGDSGVGKSNLLSRFTR+EF+LESKSTIGVEFAT+SI+  ++KI+KAQI
Sbjct: 2   DYYDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQI 61
Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGN 126
           WDTAGQERYRAITSAYYRGAVGALLVYD+T+  +FEN+E+WLKELRD+ DSNIVI+LVGN
Sbjct: 62  WDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGN 121
Query: 127 KADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRK 181
           K+DL+HLR ++  DAT +A++E   F+ETSALE+ NVE AF ++L +IY V  +K
Sbjct: 122 KSDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNVRQKK 176

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  255 bits (652), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 121/215 (56%), Positives = 159/215 (73%), Gaps = 8/215 (3%)
Query: 9   DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWD 68
           DYD LFK+VLIGDSGVGKSNLLSRFT+NEF+++SKSTIGVEFATR++  + K +KAQIWD
Sbjct: 9   DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWD 68
Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKA 128
           TAGQERYRAITSAYYRGAVGAL+VYD+++  ++EN   WL ELR++ D N+ + L+GNK+
Sbjct: 69  TAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKS 128
Query: 129 DLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGD- 187
           DL HLRAV TE++  FA+     F ETSAL S NV+ AF E++  IY+ VS+  +++GD 
Sbjct: 129 DLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDS 188
Query: 188 ------DPAALPKGQTINV-GTKDDVSAVKKVGCC 215
                 + A+ P G TI++  T ++        CC
Sbjct: 189 SANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  239 bits (611), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 115/177 (64%), Positives = 142/177 (80%)
Query: 5   RADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKA 64
           R  +DY+++FKVVLIG+SGVGK+NLLSRFTRNEFS +S++TIGVEF+TR++      VKA
Sbjct: 17  RGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKA 76
Query: 65  QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLV 124
           QIWDTAG ERYRAITSAYYRGAVGALLV+D+T+H T+  VERWLKEL DH ++ IV+MLV
Sbjct: 77  QIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLV 136
Query: 125 GNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRK 181
           GNK+DL   R V TE+A  FAE     F+ETSAL+S NVE AF  VL +I+  VS++
Sbjct: 137 GNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  238 bits (607), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 111/177 (62%), Positives = 143/177 (80%)
Query: 9   DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWD 68
           DYDYLFK+VLIGDSGVGKSNLLSRFT +EF++ESKSTIGVEFATR+I  ++K +KAQIWD
Sbjct: 6   DYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWD 65
Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKA 128
           TAG ERYRAITSAYYRGAVGAL+VYD+++  ++EN   WL ELR++ D N+ + L+GNK+
Sbjct: 66  TAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKS 125
Query: 129 DLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEI 185
           DL HLRAV T++A  FA      F ETSAL S NV+ AF E++  I+++VS+  +++
Sbjct: 126 DLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSKHQVDL 182

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  237 bits (604), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 114/174 (65%), Positives = 141/174 (81%)
Query: 8   DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIW 67
           +DY+++FKVVLIG+SGVGK+NLLSRFTRNEFS +S++TIGVEF+TR++      VKAQIW
Sbjct: 5   EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIW 64
Query: 68  DTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNK 127
           DTAG ERYRAITSAYYRGAVGALLV+D+T+H T+  VERWLKEL DH ++ IV+MLVGNK
Sbjct: 65  DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNK 124
Query: 128 ADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRK 181
           +DL   R V TE+A  FAE     F+ETSAL+S NVE AF  VL +I+  VS++
Sbjct: 125 SDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 178

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  186 bits (471), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 89/176 (50%), Positives = 119/176 (67%)
Query: 1   MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK 60
           +G+  A  +Y Y+FK ++IGD GVGKS LL +FT  +F  +   TIGVEF TR I    +
Sbjct: 3   LGSATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQ 62
Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV 120
            +K QIWDTAGQER+RA+T +YYRGA GAL+VYD+TR  T+ ++  WL + R+ T+ N V
Sbjct: 63  KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV 122
Query: 121 IMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
           I+L+GNKADL   R V+ E+A  FAE     F+E SA    NVE+AF E   +IY+
Sbjct: 123 IILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  184 bits (468), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 91/166 (54%), Positives = 112/166 (67%)
Query: 10  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDT 69
           Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I  D K +K QIWDT
Sbjct: 7   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 66
Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKAD 129
           AGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H++SN+VIML+GNK+D
Sbjct: 67  AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 126
Query: 130 LRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
           L   R V  E+  AFA      FMETSA  + NVE AF     +IY
Sbjct: 127 LESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIY 172

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  184 bits (467), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 90/169 (53%), Positives = 113/169 (66%)
Query: 12  YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAG 71
           YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R +  D K +K QIWDTAG
Sbjct: 20  YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 79
Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR 131
           QE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H+ SN+VIML+GNK+DL 
Sbjct: 80  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139
Query: 132 HLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSR 180
             R V  E+  AFA      FMETSA  + NVE AF     +IYR + +
Sbjct: 140 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 188

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  181 bits (459), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 87/171 (50%), Positives = 115/171 (67%)
Query: 6   ADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQ 65
           A  +Y Y+FK ++IGD GVGKS LL +FT  +F  +   TIGVEF TR I    + +K Q
Sbjct: 23  APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQ 82
Query: 66  IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVG 125
           IWDTAGQ R+RA+T +YYRGA GAL+VYD+TR  T+ ++  WL + R+ T+ N VI+L+G
Sbjct: 83  IWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG 142
Query: 126 NKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
           NKADL   R V+ E+A  FAE     F+E SA    NVE+AF E   +IY+
Sbjct: 143 NKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 193

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  177 bits (449), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 94/207 (45%), Positives = 131/207 (63%), Gaps = 4/207 (1%)
Query: 9   DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWD 68
           +YDYLFK++LIG+SGVGKS LL RF+ + ++ +  STIGV+F  +++  D K VK QIWD
Sbjct: 4   EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 63
Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKA 128
           TAGQER+R ITS+YYRG+ G ++VYDVT   +F  V+ WL+E+  +  S ++ +LVGNK 
Sbjct: 64  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 123
Query: 129 DLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDD 188
           DL+  R V  + A  FA+     F+ETSAL+S NVE+AF  +  QI   +S++ L    +
Sbjct: 124 DLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNL----N 179
Query: 189 PAALPKGQTINVGTKDDVSAVKKVGCC 215
                K    NV  K         GCC
Sbjct: 180 ETTQKKEDKGNVNLKGQSLTNTGGGCC 206

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  177 bits (448), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 95/207 (45%), Positives = 132/207 (63%), Gaps = 5/207 (2%)
Query: 9   DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWD 68
           +YDYLFK++LIG+SGVGKS LL RF+ + ++ +  STIGV+F  +++  D K VK QIWD
Sbjct: 4   EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 63
Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKA 128
           TAGQER+R ITS+YYRG+ G ++VYDVT   +F  V+ WL+E+  +  S ++ +LVGNK 
Sbjct: 64  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 123
Query: 129 DLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDD 188
           DL+  R V  + A  FA+     F+ETSAL+S NVE+AF  +  QI   +S++ L    +
Sbjct: 124 DLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNL----N 179
Query: 189 PAALPKGQTINVGTKDDVSAVKKVGCC 215
                K    NV  K   S     GCC
Sbjct: 180 ETTQKKEDKGNVNLKGQ-SLTNTGGCC 205

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  172 bits (437), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 85/166 (51%), Positives = 118/166 (71%)
Query: 9   DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWD 68
           +YDYLFK++LIG+SGVGKS LL RF+ + ++ +  STIGV+F  +++  D K VK QIWD
Sbjct: 17  EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 76
Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKA 128
           TAGQER+R ITS+YYRG+ G ++VYDVT   +F  V+ WL+E+  +  S ++ +LVGNK 
Sbjct: 77  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 136
Query: 129 DLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           DL+  R V  + A  FA+     F+ETSAL+S NVE+AF  +  QI
Sbjct: 137 DLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  170 bits (430), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 85/170 (50%), Positives = 113/170 (66%)
Query: 5   RADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKA 64
           R   +YDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R+I  D K +K 
Sbjct: 17  RGSPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 76
Query: 65  QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLV 124
           QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL+E+  +   N+  +LV
Sbjct: 77  QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLV 136
Query: 125 GNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           GNK DL   + V    A  FA+     F+ETSA  + NVE +F  +  +I
Sbjct: 137 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  169 bits (429), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 80/158 (50%), Positives = 111/158 (70%)
Query: 10  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDT 69
           YDYLFK++LIGDSGVGK+ +L RF+ + F+    STIG++F  R+I  D K +K QIWDT
Sbjct: 5   YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 64
Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKAD 129
           AGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W++ + +H  +++  M++GNK D
Sbjct: 65  AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 124
Query: 130 LRHLRAVSTEDATAFAERENTFFMETSALESMNVENAF 167
           +   R VS E     A      FMETSA  ++NVENAF
Sbjct: 125 VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF 162

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  169 bits (428), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 87/177 (49%), Positives = 118/177 (66%), Gaps = 3/177 (1%)
Query: 9   DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWD 68
           +YDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R+I  D K +K QIWD
Sbjct: 5   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 64
Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKA 128
           TAGQER+R ITS+YYRGA G ++VYDVT   ++ NV++WL+E+  +   N+  +LVGNK+
Sbjct: 65  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS 124
Query: 129 DLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEI 185
           DL   + V    A  FA+     F+ETSA  + NVE AF  +  +I +   R  LE+
Sbjct: 125 DLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKK---RMGLEV 178

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  169 bits (428), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 84/170 (49%), Positives = 114/170 (67%)
Query: 7   DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQI 66
           + +YDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R+I  D K +K QI
Sbjct: 10  NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 69
Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGN 126
           WDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL+E+  +   N+  +LVGN
Sbjct: 70  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 129
Query: 127 KADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
           K DL   + V    A  FA+     F+ETSA  + NVE +F  +  +I +
Sbjct: 130 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 179

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  168 bits (426), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 84/166 (50%), Positives = 113/166 (68%)
Query: 9   DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWD 68
           +YDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R+I  D K +K QIWD
Sbjct: 5   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 64
Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKA 128
           TAGQER+R ITS+YYRGA G ++VYDVT   ++ NV++WL+E+  +   N+  +LVGNK+
Sbjct: 65  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS 124
Query: 129 DLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           DL   + V    A  FA+     F+ETSA  + NVE AF  +  +I
Sbjct: 125 DLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  168 bits (426), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 83/174 (47%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Query: 2   GAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKI 61
           G+   D+ YD+LFK+VL+GD+ VGK+ ++ RF    FS    STIGV+F  +++    K 
Sbjct: 18  GSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKR 77
Query: 62  VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVI 121
           VK QIWDTAGQER+R IT +YYR A GA+L YD+T+  +F +V  W++++R +  SNIV 
Sbjct: 78  VKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQ 137
Query: 122 MLVGNKADLRHLRAVSTEDATAFAERENTFF-METSALESMNVENAFTEVLTQI 174
           +L+GNK+DL  LR VS  +A + AE  +    +ETSA +S NVE AF  V T++
Sbjct: 138 LLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  167 bits (424), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 84/166 (50%), Positives = 112/166 (67%)
Query: 9   DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWD 68
           +YDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R+I  D K +K QIWD
Sbjct: 2   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKA 128
           TAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL+E+  +   N+  +LVGNK 
Sbjct: 62  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 121
Query: 129 DLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           DL   + V    A  FA+     F+ETSA  + NVE +F  +  +I
Sbjct: 122 DLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  167 bits (422), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 84/168 (50%), Positives = 112/168 (66%)
Query: 7   DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQI 66
           + +YDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R+I  D K +K QI
Sbjct: 27  NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 86
Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGN 126
           WDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL+E+  +   N+  +LVGN
Sbjct: 87  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 146
Query: 127 KADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           K DL   + V    A  FA+     F+ETSA  + NVE +F     +I
Sbjct: 147 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  167 bits (422), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 83/168 (49%), Positives = 113/168 (67%)
Query: 7   DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQI 66
           + +YDYLFK++LIGDSGVGK+ LL RF  + ++    STIGV+F  R+I  D K +K QI
Sbjct: 10  NPEYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 69
Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGN 126
           WDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL+E+  +   N+  +LVGN
Sbjct: 70  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 129
Query: 127 KADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           K DL   + V    A  FA+     F+ETSA  + NVE +F  +  +I
Sbjct: 130 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  167 bits (422), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 79/157 (50%), Positives = 110/157 (70%)
Query: 11  DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTA 70
           DYLFK++LIGDSGVGK+ +L RF+ + F+    STIG++F  R+I  D K +K QIWDTA
Sbjct: 4   DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 63
Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL 130
           GQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W++ + +H  +++  M++GNK D+
Sbjct: 64  GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 123
Query: 131 RHLRAVSTEDATAFAERENTFFMETSALESMNVENAF 167
              R VS E     A      FMETSA  ++NVENAF
Sbjct: 124 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF 160

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  166 bits (421), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 84/171 (49%), Positives = 118/171 (69%)
Query: 9   DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWD 68
           +YDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R+I  ++K VK QIWD
Sbjct: 5   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWD 64
Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKA 128
           TAGQER+R ITS+YYRGA G ++VYDVT   +F+NV++W++E+  +   N+  +LVGNK 
Sbjct: 65  TAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKC 124
Query: 129 DLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVS 179
           DL   R V++++    A+     F+ETSA  + NVE AF  +  +I + V 
Sbjct: 125 DLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRVQ 175

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  164 bits (416), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 83/168 (49%), Positives = 112/168 (66%)
Query: 7   DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQI 66
           + +YDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R+I  D K +K QI
Sbjct: 2   NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 61
Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGN 126
           WDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL+E+  +   N+  +LVG 
Sbjct: 62  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGI 121
Query: 127 KADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           K DL   + V    A  FA+     F+ETSA  + NVE +F  +  +I
Sbjct: 122 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  164 bits (415), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 83/166 (50%), Positives = 111/166 (66%)
Query: 9   DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWD 68
           +YD LFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R+I  D K +K QIWD
Sbjct: 2   EYDALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKA 128
           TAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL+E+  +   N+  +LVGNK 
Sbjct: 62  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 121
Query: 129 DLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           DL   + V    A  FA+     F+ETSA  + NVE +F  +  +I
Sbjct: 122 DLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  164 bits (415), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 80/157 (50%), Positives = 105/157 (66%)
Query: 11  DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTA 70
           D+LFK ++IG +G GKS LL +F  N+F  +S  TIGVEF +R +    K VK QIWDTA
Sbjct: 23  DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL 130
           GQER+R++T +YYRGA GALLVYD+T   T+ ++  WL + R     NIV++L GNK DL
Sbjct: 83  GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDL 142
Query: 131 RHLRAVSTEDATAFAERENTFFMETSALESMNVENAF 167
              R V+  +A+ FA+     F+ETSAL   NVE AF
Sbjct: 143 DPEREVTFLEASRFAQENELMFLETSALTGENVEEAF 179

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  163 bits (413), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 85/182 (46%), Positives = 113/182 (62%), Gaps = 4/182 (2%)
Query: 8   DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIW 67
           + YD+LFK ++IG++G GKS LL +F   +F  +S  TIGVEF ++ I    K VK QIW
Sbjct: 5   ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 64
Query: 68  DTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNK 127
           DTAGQER+R++T +YYRGA GALLVYD+T   T+  +  WL + R     NIVI+L GNK
Sbjct: 65  DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 124
Query: 128 ADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGD 187
            DL   R V+  +A+ FA+     F+ETSAL   NVE AF +   +I   +    L    
Sbjct: 125 KDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGEL---- 180
Query: 188 DP 189
           DP
Sbjct: 181 DP 182

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  162 bits (410), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 85/168 (50%), Positives = 112/168 (66%), Gaps = 1/168 (0%)
Query: 9   DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWD 68
           DYD+LFK+++IGDSGVGKS+LL RF  N FS    +TIGV+F  R++  + + VK QIWD
Sbjct: 5   DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWD 64
Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKA 128
           TAGQER+R ITS YYRG  G ++VYDVT   +F NV+RWL E+  + D ++  +LVGNK 
Sbjct: 65  TAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKN 123
Query: 129 DLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
           D    + V TEDA  FA +      ETSA E++NVE  F  +   + R
Sbjct: 124 DDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLR 171

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  161 bits (408), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 81/169 (47%), Positives = 109/169 (64%)
Query: 6   ADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQ 65
             + YD+LFK ++IG++G GKS LL +F   +F  +S  TIGVEF ++ I    K VK Q
Sbjct: 4   GSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQ 63
Query: 66  IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVG 125
           IWDTAGQER+R++T +YYRGA GALLVYD+T   T+  +  WL + R     NIVI+L G
Sbjct: 64  IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 123
Query: 126 NKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           NK DL   R V+  +A+ FA+     F+ETSAL   +VE AF +   +I
Sbjct: 124 NKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 172

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  160 bits (405), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 74/167 (44%), Positives = 114/167 (68%)
Query: 8   DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIW 67
           +DYD+LFK+VLIG++GVGK+ L+ RFT+  F     +TIGV+F  +++  + + VK QIW
Sbjct: 21  EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIW 80
Query: 68  DTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNK 127
           DTAGQER+R+IT +YYR A   +L YD+T   +F  +  WL+E+  +  + ++ +LVGNK
Sbjct: 81  DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNK 140
Query: 128 ADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
            DL   R VS + A  F+E ++ +++ETSA ES NVE  F ++  ++
Sbjct: 141 IDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  160 bits (404), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 77/163 (47%), Positives = 108/163 (66%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK+VL+G+S VGKS+L+ RF + +F    +STIG  F T+S+  DD  VK +IWDTAGQE
Sbjct: 9   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           RY ++   YYRGA  A++VYD+T   TF   + W+KEL+     +IVI L GNKADL + 
Sbjct: 69  RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 128
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
           R V  E+A A+A+  +  FMETSA  +MNV + F  +  ++ +
Sbjct: 129 RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPK 171

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  159 bits (403), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 73/163 (44%), Positives = 110/163 (67%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+VL+GD G GKS+L+ RF +++F    +STIG  F ++++  +D  VK +IWDTAGQER
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLR 134
           Y ++   YYRGA  A++V+DVT   +FE  ++W++EL+   + N+V+ L GNK+DL   R
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 135 AVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRV 177
            V+ EDA  +A+    FFMETSA  + NV+  F E+  ++ RV
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRV 176

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  159 bits (401), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 77/161 (47%), Positives = 106/161 (65%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK+VL+G+S VGKS+L+ RF + +F    +STIG  F T+++  DD  VK +IWDTAGQE
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           RY ++   YYRGA  A++VYD+T   TF   + W+KEL+     NIVI L GNKADL   
Sbjct: 64  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 123
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           RAV  ++A A+A+  +  FMETSA  +MNV   F  +  ++
Sbjct: 124 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  158 bits (399), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 80/167 (47%), Positives = 108/167 (64%)
Query: 8   DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIW 67
           + YD+LFK ++IG++G GKS LL +F   +F  +S  TIGVEF ++ I    K VK QIW
Sbjct: 3   ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 62
Query: 68  DTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNK 127
           DTAG ER+R++T +YYRGA GALLVYD+T   T+  +  WL + R     NIVI+L GNK
Sbjct: 63  DTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 122
Query: 128 ADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
            DL   R V+  +A+ FA+     F+ETSAL   +VE AF +   +I
Sbjct: 123 KDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 169

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  158 bits (399), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 76/163 (46%), Positives = 108/163 (66%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK+VL+G+S VGKS+L+ RF + +F    +STIG  F T+++  DD  VK +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           RY ++   YYRGA  A++VYD+T   +F   + W+KEL+     NIVI L GNKADL + 
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
           RAV  ++A ++A+  +  FMETSA  SMNV   F  +  ++ +
Sbjct: 128 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 170

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  158 bits (399), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 76/163 (46%), Positives = 108/163 (66%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK+VL+G+S VGKS+L+ RF + +F    +STIG  F T+++  DD  VK +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           RY ++   YYRGA  A++VYD+T   +F   + W+KEL+     NIVI L GNKADL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
           RAV  ++A ++A+  +  FMETSA  SMNV   F  +  ++ +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  157 bits (398), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 76/163 (46%), Positives = 108/163 (66%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK+VL+G+S VGKS+L+ RF + +F    +STIG  F T+++  DD  VK +IWDTAGQE
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           RY ++   YYRGA  A++VYD+T   +F   + W+KEL+     NIVI L GNKADL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
           RAV  ++A ++A+  +  FMETSA  SMNV   F  +  ++ +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  157 bits (397), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 76/163 (46%), Positives = 108/163 (66%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK+VL+G+S VGKS+L+ RF + +F    +STIG  F T+++  DD  VK +IWDTAGQE
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           RY ++   YYRGA  A++VYD+T   +F   + W+KEL+     NIVI L GNKADL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
           RAV  ++A ++A+  +  FMETSA  SMNV   F  +  ++ +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  156 bits (395), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 76/163 (46%), Positives = 108/163 (66%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK+VL+G+S VGKS+L+ RF + +F    +STIG  F T+++  DD  VK +IWDTAGQE
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           RY ++   YYRGA  A++VYD+T   +F   + W+KEL+     NIVI L GNKADL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
           RAV  ++A ++A+  +  FMETSA  SMNV   F  +  ++ +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  156 bits (395), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 76/163 (46%), Positives = 108/163 (66%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK+VL+G+S VGKS+L+ RF + +F    +STIG  F T+++  DD  VK +IWDTAGQE
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           RY ++   YYRGA  A++VYD+T   +F   + W+KEL+     NIVI L GNKADL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
           RAV  ++A ++A+  +  FMETSA  SMNV   F  +  ++ +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  156 bits (394), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 76/163 (46%), Positives = 108/163 (66%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK+VL+G+S VGKS+L+ RF + +F    +STIG  F T+++  DD  VK +IWDTAGQE
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           RY ++   YYRGA  A++VYD+T   +F   + W+KEL+     NIVI L GNKADL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
           RAV  ++A ++A+  +  FMETSA  SMNV   F  +  ++ +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  155 bits (393), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 76/161 (47%), Positives = 105/161 (65%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK+VL+G+S VGKS+L+ RF + +F    +STIG  F T+++  DD  VK +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           RY ++   YYRGA  A++VYD+T   TF   + W+KEL+     NIVI L GNKADL   
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           RAV  ++A A+A+  +  FMETSA  +MNV   F  +  ++
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  155 bits (393), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 76/161 (47%), Positives = 105/161 (65%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK+VL+G+S VGKS+L+ RF + +F    +STI   F T+++  DD  VK +IWDTAGQE
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           RY ++   YYRGA  A++VYD+T   TF   + W+KEL+     NIVI L GNKADL   
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           RAV  ++A A+A+  +  FMETSA  +MNV   F  +  ++
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  155 bits (392), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 79/162 (48%), Positives = 107/162 (66%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K++LIGDSGVGKS LL RF  + ++    STIGV+F  R+I  D K +K QIWDTAGQER
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLR 134
           +R ITS+YYRGA G ++VYDVT   +F NV++WL+E+  +   N+  +LVGNK DL   +
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 135 AVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
            V    A  FA+     F+ETSA  + NVE +F  +  +I +
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 162

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  154 bits (390), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 75/163 (46%), Positives = 107/163 (65%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK+VL+G+S VGKS+L+ RF + +F    +STIG  F T+++  DD  VK +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           RY ++   YYRGA  A++VYD+T   +F   + W+KEL+     NIVI L GNKADL + 
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 125
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
           RAV  ++A ++A+  +  FMETSA  SMNV   F  +  ++ +
Sbjct: 126 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 168

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  154 bits (388), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 77/170 (45%), Positives = 108/170 (63%), Gaps = 1/170 (0%)
Query: 8   DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRCDDKIVKAQI 66
           D YD  FKV+L+GDSGVGK+ LL RF    F   +  ST+G++F  + +  D   VK Q+
Sbjct: 5   DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQM 64
Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGN 126
           WDTAGQER+R++T AYYR A   LL+YDVT   +F+N++ WL E+ ++   ++ +ML+GN
Sbjct: 65  WDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGN 124
Query: 127 KADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
           K D  H R V  ED    A+     FMETSA   +NV+ AFT +  ++ R
Sbjct: 125 KVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 174

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  153 bits (387), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 67/161 (41%), Positives = 105/161 (65%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            KV L+GD+GVGKS+++ RF ++ F      TIG  F T+++ C +++ K  IWDTAGQE
Sbjct: 24  LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           R+ ++   YYRG+  A++VYD+T+  +F  +++W+KEL++H   NIV+ + GNK DL  +
Sbjct: 84  RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           R V  +DA  +AE      +ETSA  ++N+E  F  +  QI
Sbjct: 144 REVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  152 bits (385), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 74/163 (45%), Positives = 106/163 (65%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK+VL+G+S VGKS+L+ RF + +F    +STIG  F T+++  DD  VK +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           RY ++   YYRGA  A++VYD+T   +F   + W+KEL+     NIVI L GNKADL + 
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
           RAV  ++A ++A+  +  F ETSA  S NV   F  +  ++ +
Sbjct: 128 RAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKLPK 170

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  152 bits (384), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 77/179 (43%), Positives = 116/179 (64%), Gaps = 2/179 (1%)
Query: 10  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDT 69
           YD + K++LIGDSGVGKS LL RF  ++F+    +TIG++F  +++  + K VK Q+WDT
Sbjct: 17  YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDT 76
Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKAD 129
           AGQER+R IT+AYYRGA+G +LVYDVT   TF N+++W K + +H +    ++LVGNK+D
Sbjct: 77  AGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 136
Query: 130 LRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIY-RVVSRKALEIGD 187
           +   R V+ +   A A+     F+E+SA    NV   F  +   I  ++ S K + +G+
Sbjct: 137 M-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVGVGN 194

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  149 bits (376), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 72/157 (45%), Positives = 105/157 (66%), Gaps = 1/157 (0%)
Query: 11  DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTA 70
           D + K++LIGDSGVGKS LL RF  ++F+    +TIG++F  +++  + K VK QIWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL 130
           GQER+R IT+AYYRGA+G +LVYD+T   TF N+++W K + +H +    ++LVGNK+D+
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120
Query: 131 RHLRAVSTEDATAFAERENTFFMETSALESMNVENAF 167
              R V+ +   A A+     F+E+SA    NV   F
Sbjct: 121 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 156

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  148 bits (373), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 70/166 (42%), Positives = 110/166 (66%)
Query: 9   DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWD 68
           ++DY+FK+++IG+S VGK++ L R+  + F+    ST+G++F  +++   +K VK QIWD
Sbjct: 19  NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWD 78
Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKA 128
           TAGQERYR IT+AYYRGA+G +L+YD+T   +F  V+ W  +++ ++  N  ++LVGNK 
Sbjct: 79  TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKC 138
Query: 129 DLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           D+   R V TE     AE+    F E SA E+++V  AF  ++  I
Sbjct: 139 DMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  148 bits (373), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 111/166 (66%)
Query: 9   DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWD 68
           ++DY+FK+++IG+S VGK++ L R+  + F+    ST+G++F  ++I  +DK +K QIWD
Sbjct: 1   NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWD 60
Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKA 128
           TAGQERYR IT+AYYRGA+G +L+YD+T   +F  V+ W  +++ ++  N  ++LVGNK 
Sbjct: 61  TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKC 120
Query: 129 DLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           D+   R VS+E     A+     F E SA +++NV+  F  ++  I
Sbjct: 121 DMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  147 bits (371), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 67/161 (41%), Positives = 104/161 (64%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            KV L+GD+GVGKS+++ RF  + F      TIG  F T++++  +++ K  IWDTAGQE
Sbjct: 6   LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           R+RA+   YYRG+  A++VYD+T+  TF  ++ W++ELR H   +IV+ + GNK DL  +
Sbjct: 66  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 125
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           R V   DA  +A+  +  F+ETSA  ++N+   F E+  +I
Sbjct: 126 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  147 bits (371), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 71/155 (45%), Positives = 104/155 (67%), Gaps = 1/155 (0%)
Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
           + K++LIGDSGVGKS LL RF  ++F+    +TIG++F  +++  + K VK Q+WDTAGQ
Sbjct: 7   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH 132
           ER+R IT+AYYRGA+G +LVYDVT   TF N+++W K + +H +    ++LVGNK+D+  
Sbjct: 67  ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-E 125
Query: 133 LRAVSTEDATAFAERENTFFMETSALESMNVENAF 167
            R V+ +   A A+     F+E+SA    NV   F
Sbjct: 126 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 160

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  147 bits (371), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 71/164 (43%), Positives = 106/164 (64%)
Query: 11  DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTA 70
           DY+FK++LIG+S VGK++ L R+  + F+    ST+G++F  +++   DK +K QIWDTA
Sbjct: 20  DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTA 79
Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL 130
           GQERYR IT+AYYRGA+G LL+YD+    +F  V+ W  +++ ++  N  ++LVGNK DL
Sbjct: 80  GQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDL 139
Query: 131 RHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              R V  ED    A+     F E SA E++NV+  F  ++  I
Sbjct: 140 EDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  146 bits (369), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 72/157 (45%), Positives = 103/157 (65%), Gaps = 1/157 (0%)
Query: 11  DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTA 70
           D + K++LIGDSGVGKS LL RF  ++F+    +TIG++F  +++  + K VK QIWDTA
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL 130
           GQER+R IT+AYYRGA G +LVYD+T   TF N+++W K + +H +    ++LVGNK+D 
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD- 119
Query: 131 RHLRAVSTEDATAFAERENTFFMETSALESMNVENAF 167
              R V+ +   A A+     F+E+SA    NV   F
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 156

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  145 bits (367), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/157 (45%), Positives = 103/157 (65%), Gaps = 1/157 (0%)
Query: 11  DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTA 70
           D + K++LIGDSGVGKS LL RF  ++F+    +TIG++F  +++  + K VK Q+WDTA
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL 130
           GQER+R IT+AYYRGA G +LVYDVT   TF N+++W K + +H +    ++LVGNK+D 
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD- 119
Query: 131 RHLRAVSTEDATAFAERENTFFMETSALESMNVENAF 167
              R V+ +   A A+     F+E+SA    NV   F
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 156

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  145 bits (365), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 66/161 (40%), Positives = 103/161 (63%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            KV L+GD+GVGKS+++ RF  + F      TIG  F T++++  +++ K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           R+RA+   YYRG+  A++VYD+T+  TF  ++ W++ELR H   +IV+ + GNK DL  +
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           R V   DA  +A+  +  F+ETSA  ++N+   F E+  +I
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  143 bits (361), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 78/171 (45%), Positives = 108/171 (63%), Gaps = 2/171 (1%)
Query: 7   DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQI 66
           D+D     K+++IG+SGVGKS+LL RFT + F  E  +TIGV+F  ++I  D    K  I
Sbjct: 9   DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAI 68
Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDH-TDSNIVIMLVG 125
           WDTAGQER+R +T +YYRGA G +LVYDVTR  TF  ++ WL EL  + T ++IV  LVG
Sbjct: 69  WDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVG 128
Query: 126 NKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
           NK D +  R V   +   FA + +  F+E SA     V+ AF E++ +I +
Sbjct: 129 NKID-KENREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQ 178

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  141 bits (356), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/183 (40%), Positives = 112/183 (61%), Gaps = 6/183 (3%)
Query: 10  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDT 69
           +DY FK+++IG+S VGK++ L R+  + F+    ST+G++F  ++I  +DK +K QIWDT
Sbjct: 5   FDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 64
Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKAD 129
           AG ERYR IT+AYYRGA G +L YD+T   +F  V+ W  +++ ++  N  ++LVGNK D
Sbjct: 65  AGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 124
Query: 130 LRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGD-- 187
               R VS+E     A+     F E SA +++NV+  F  ++     V+  K  E  D  
Sbjct: 125 XEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD----VICEKXSESLDTA 180
Query: 188 DPA 190
           DPA
Sbjct: 181 DPA 183

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 65/167 (38%), Positives = 107/167 (64%), Gaps = 1/167 (0%)
Query: 11  DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTA 70
           D+  +V++IG  GVGK++L+ RFT + F    KST+GV+F  +++    K ++ QIWDTA
Sbjct: 24  DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 83
Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL 130
           GQER+ +ITSAYYR A G +LVYD+T+  TF+++ +W+K +  +   +  ++LVGNK D 
Sbjct: 84  GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 143
Query: 131 RHLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVLTQIYR 176
              R ++ +    FA++     F E SA ++ NV+  F +++  I +
Sbjct: 144 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  137 bits (345), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 103/157 (65%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK+V +G+  VGK++L++RF  + F    ++TIG++F ++++  +D+ V+ Q+WDTAGQE
Sbjct: 15  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           R+R++  +Y R +  A++VYD+T   +F    +W+ ++R    S+++IMLVGNK DL   
Sbjct: 75  RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170
           R VSTE+    A+  N  F+ETSA    NV+  F  V
Sbjct: 135 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 171

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  135 bits (341), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 103/157 (65%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK+V +G+  VGK++L++RF  + F    ++TIG++F ++++  +D+ ++ Q+WDTAGQE
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           R+R++  +Y R +  A++VYD+T   +F+   +W+ ++R    S+++IMLVGNK DL   
Sbjct: 67  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170
           R VS E+    A+  N  F+ETSA    NV+  F  V
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  134 bits (338), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 106/161 (65%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           +K+V +G+  VGK+++++RF  + F    +STIG++F ++++  D+  V+ Q+WDTAGQE
Sbjct: 2   YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           R+R++  +Y R +  A++VYD+T   +FEN  +W++++ +    +++I LVGNK DL  L
Sbjct: 62  RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL 121
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           R V+ E+    A+  NT F ETSA    N++  F +  +++
Sbjct: 122 RKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  134 bits (338), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 62/157 (39%), Positives = 103/157 (65%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK+V +G+  VGK++L++RF  + F    ++TIG++F ++++  +D+ V+ Q+WDTAGQE
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           R+R++  +Y R +  A++VYD+T   +F+   +W+ ++R    S+++IMLVGNK DL   
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170
           R VS E+    A+  N  F+ETSA    NV+  F  V
Sbjct: 122 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 158

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  134 bits (338), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/163 (41%), Positives = 108/163 (66%), Gaps = 6/163 (3%)
Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
           L KV+++GDSGVGK++L++++   +FS + K+TIG +F T+ +  DD++V  QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERW----LKELRDHTDSNIVIMLVGNKA 128
           ER++++  A+YRGA   +LV+DVT   TF+ ++ W    L +       N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 129 DLRHLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEV 170
           DL + R V+T+ A A+   + N  + ETSA E++NVE AF  +
Sbjct: 128 DLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  134 bits (337), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/163 (41%), Positives = 108/163 (66%), Gaps = 6/163 (3%)
Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
           L KV+++GDSGVGK++L++++   +FS + K+TIG +F T+ +  DD++V  QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERW----LKELRDHTDSNIVIMLVGNKA 128
           ER++++  A+YRGA   +LV+DVT   TF+ ++ W    L +       N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 129 DLRHLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEV 170
           DL + R V+T+ A A+   + N  + ETSA E++NVE AF  +
Sbjct: 128 DLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  133 bits (334), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 67/163 (41%), Positives = 106/163 (65%), Gaps = 6/163 (3%)
Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
           L KV+++GDSGVGK++L++++   +FS + K+TIG +F T+ +  DD++V  QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKEL----RDHTDSNIVIMLVGNKA 128
           ER++++  A+YRGA   +LV+DVT   TF+ ++ W  E           N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 129 DLRHLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEV 170
           D  + R V+T+ A A+   + N  + ETSA E++NVE AF  +
Sbjct: 128 DFEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score =  133 bits (334), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 81/220 (36%), Positives = 124/220 (56%), Gaps = 16/220 (7%)
Query: 7   DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK------ 60
           D DYDYL K++ +GDSGVGK+  L R+T N+F+ +  +T+G++F  + +  D +      
Sbjct: 5   DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGAS 64
Query: 61  ----IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHT- 115
                V  Q+WDTAG ER+R++T+A++R A+G LL++D+T   +F NV  W+ +L+ +  
Sbjct: 65  GKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 124
Query: 116 DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
             N  I+L+GNKADL   R V+   A   AE+    + ETSA    NVE +   +L  I 
Sbjct: 125 CENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIM 184
Query: 176 RVVSRKALEIGDDPAALPKGQTINVGTKD-DVSAVKKVGC 214
           + +  K +E    P  +  G   N G  D +  A KK  C
Sbjct: 185 KRM-EKCVEKTQVPDTVNGG---NSGKLDGEKPAEKKCAC 220

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score =  133 bits (334), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 64/115 (55%), Positives = 84/115 (73%)
Query: 16  VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY 75
           ++LIGDSGVGKS LL RF  + ++    STIGV+F  R+I  D K +K QIWDTAGQER+
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 76  RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL 130
           R ITS+YYRGA G ++VYDVT   +F NV++WL+E+  +   N+  +LVGNK DL
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  132 bits (333), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 60/157 (38%), Positives = 102/157 (64%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK+V +G+  VGK++L++RF  + F    ++TIG++F ++++  +D+ ++ Q+WDTAG E
Sbjct: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           R+R++  +Y R +  A++VYD+T   +F+   +W+ ++R    S+++IMLVGNK DL   
Sbjct: 74  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170
           R VS E+    A+  N  F+ETSA    NV+  F  V
Sbjct: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 170

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score =  132 bits (333), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/183 (38%), Positives = 110/183 (60%), Gaps = 11/183 (6%)
Query: 5   RADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK---- 60
           R   DYDYL K++ +GDSGVGK+  L R+T N+F+ +  +T+G++F  + +  + +    
Sbjct: 17  RGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNG 76
Query: 61  ------IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDH 114
                  V  Q+WDTAGQER+R++T+A++R A+G LL++D+T   +F NV  W+ +L+ +
Sbjct: 77  SSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN 136
Query: 115 TD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQ 173
               N  I+L+GNKADL   R V+   A   A++    + ETSA    NVE A   +L  
Sbjct: 137 AYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDL 196
Query: 174 IYR 176
           I +
Sbjct: 197 IMK 199

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  132 bits (332), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 102/157 (64%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK+V +G+  VGK++L++RF  + F    ++TIG++F ++++  +D+ V+ Q+WDTAG E
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           R+R++  +Y R +  A++VYD+T   +F+   +W+ ++R    S+++IMLVGNK DL   
Sbjct: 77  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 136
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170
           R VS E+    A+  N  F+ETSA    NV+  F  V
Sbjct: 137 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 173

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 103/157 (65%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK+V +G+  VGK++L++RF  + F    ++TIG++F ++++  +D+ V+ Q+WDTAGQE
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           R+R++  +Y R +  A++VYD+T   +F+   +W+ ++R    S+++IMLVGNK DL   
Sbjct: 63  RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170
           R ++ E+    A+  +  F+ETSA    NV+  F  V
Sbjct: 123 RQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRV 159

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 102/157 (64%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK+V +G+  VGK++L++RF  + F    ++TIG++F ++++  +D+ V+ Q+WDTAG E
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           R+R++  +Y R +  A++VYD+T   +F+   +W+ ++R    S+++IMLVGNK DL   
Sbjct: 67  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170
           R VS E+    A+  N  F+ETSA    NV+  F  V
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/163 (41%), Positives = 107/163 (65%), Gaps = 6/163 (3%)
Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
           L KV+++GDSGVGK++L++++   +FS + K+TIG +F T+ +  DD++V  QIWDTAG 
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERW----LKELRDHTDSNIVIMLVGNKA 128
           ER++++  A+YRGA   +LV+DVT   TF+ ++ W    L +       N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 129 DLRHLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEV 170
           DL + R V+T+ A A+   + N  + ETSA E++NVE AF  +
Sbjct: 128 DLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 70/185 (37%), Positives = 111/185 (60%), Gaps = 11/185 (5%)
Query: 7   DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK------ 60
           D DYDYL K++ +GDSGVGK+  L R+T N+F+ +  +T+G++F  + +  D +      
Sbjct: 5   DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGAS 64
Query: 61  ----IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD 116
                V  Q+WDTAG ER+R++T+A++R A+G LL++D+T   +F NV  W+ +L+ +  
Sbjct: 65  GKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 124
Query: 117 -SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
             N  I+L+GNKADL   R V+   A   AE+    + ETSA    NVE +   +L  I 
Sbjct: 125 CENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIM 184
Query: 176 RVVSR 180
           + + +
Sbjct: 185 KRMEK 189

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 68/167 (40%), Positives = 104/167 (62%), Gaps = 6/167 (3%)
Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
           LFK++L+GD GVGKS+L++R+  N+F  +   TIGVEF  + +  D   V  QIWDTAGQ
Sbjct: 11  LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD----SNIVIMLVGNKA 128
           ER+R++ + +YRG+   LL + V    +F+N+  W KE   + D     +   +++GNK 
Sbjct: 71  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKT 130
Query: 129 DLRHLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVLTQI 174
           D++  R VSTE+A A+ +    + + ETSA +S NV  AF E + +I
Sbjct: 131 DIKE-RQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  131 bits (329), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 65/163 (39%), Positives = 101/163 (61%)
Query: 12  YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAG 71
           Y FKVVL+G+  VGK++L+ R+  N+F+ +  +T+G  F T+ +    K V   IWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR 131
           QER+ A+   YYR + GA+LVYD+T   +F+ V+ W+KELR    + I + +VGNK DL 
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 132 HLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
             R VS ++A ++AE        TSA ++  +E  F ++  ++
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score =  130 bits (327), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 70/186 (37%), Positives = 115/186 (61%), Gaps = 11/186 (5%)
Query: 6   ADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSI--RCDD---- 59
           +D DYDYL K + +GDSGVGK+++L ++T  +F+ +  +T+G++F  + +  R +     
Sbjct: 4   SDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGA 63
Query: 60  ----KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHT 115
               + +  Q+WDTAG ER+R++T+A++R A+G LL++D+T   +F NV  W+ +L+ H 
Sbjct: 64  VGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA 123
Query: 116 DS-NIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
            S N  I+L GNK+DL   RAV  E+A   AE+    + ETSA    N+ +A   +L  I
Sbjct: 124 YSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLI 183
Query: 175 YRVVSR 180
            + + R
Sbjct: 184 MKRMER 189

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  130 bits (326), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 94/156 (60%), Gaps = 3/156 (1%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+VL+G++ VGKS+++ RF  N+F+   + TIG  F T+ +  ++  VK +IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH-- 132
           + ++   YYR A  AL+VYDVT+  +F     W+KEL +    +I+I LVGNK D     
Sbjct: 65  FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124
Query: 133 -LRAVSTEDATAFAERENTFFMETSALESMNVENAF 167
             R V+ E+    AE +   F ETSA    NV + F
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF 160

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  128 bits (321), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 64/163 (39%), Positives = 100/163 (61%)
Query: 12  YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAG 71
           Y FKVVL+G+  VGK++L+ R+  N+F+ +  +T+   F T+ +    K V   IWDTAG
Sbjct: 19  YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 78
Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR 131
           QER+ A+   YYR + GA+LVYD+T   +F+ V+ W+KELR    + I + +VGNK DL 
Sbjct: 79  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 138
Query: 132 HLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
             R VS ++A ++AE        TSA ++  +E  F ++  ++
Sbjct: 139 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 181

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score =  128 bits (321), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 67/167 (40%), Positives = 102/167 (61%), Gaps = 6/167 (3%)
Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
           LFKV+L+GD GVGKS+L++R+  N+F  +   TIGVEF  + +  D   V  QIWDTAGQ
Sbjct: 9   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD----SNIVIMLVGNKA 128
           ER+R++ + +YRG+   LL + V    +F+N+  W KE   + D     +   +++GNK 
Sbjct: 69  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 129 DLRHLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVLTQI 174
           D+   R VSTE+A A+      + + ETSA ++ NV  AF E + ++
Sbjct: 129 DISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 174

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  128 bits (321), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 64/163 (39%), Positives = 100/163 (61%)
Query: 12  YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAG 71
           Y FKVVL+G+  VGK++L+ R+  N+F+ +  +T+   F T+ +    K V   IWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR 131
           QER+ A+   YYR + GA+LVYD+T   +F+ V+ W+KELR    + I + +VGNK DL 
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 132 HLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
             R VS ++A ++AE        TSA ++  +E  F ++  ++
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score =  128 bits (321), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 70/181 (38%), Positives = 106/181 (58%), Gaps = 11/181 (6%)
Query: 7   DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK------ 60
           D DYDYL K++ +GDSGVGK+  L R+T N+F+ +  +T+G++F  + +  D +      
Sbjct: 5   DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGAS 64
Query: 61  ----IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD 116
                V  Q+WDTAG ER+R++T+A++R A G LL +D+T   +F NV  W  +L+ +  
Sbjct: 65  GKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAY 124
Query: 117 -SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
             N  I+L+GNKADL   R V+   A   AE+    + ETSA    NVE +   +L  I 
Sbjct: 125 CENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIX 184
Query: 176 R 176
           +
Sbjct: 185 K 185

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 67/167 (40%), Positives = 102/167 (61%), Gaps = 6/167 (3%)
Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
           LFKV+L+GD GVGKS+L++R+  N+F  +   TIGVEF  + +  D   V  QIWDTAGQ
Sbjct: 7   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD----SNIVIMLVGNKA 128
           ER+R++ + +YRG+   LL + V    +F+N+  W KE   + D     +   +++GNK 
Sbjct: 67  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 129 DLRHLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVLTQI 174
           D+   R VSTE+A A+      + + ETSA ++ NV  AF E + ++
Sbjct: 127 DISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 69/170 (40%), Positives = 104/170 (61%), Gaps = 6/170 (3%)
Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
           L KV+L+GD GVGKS+L++R+  N+F  ++  TIGVEF  R +  D + V  QIWDTAGQ
Sbjct: 7   LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD----SNIVIMLVGNKA 128
           ER++++ + +YRGA   LL + V    +FEN+  W KE   + D     +   +++GNK 
Sbjct: 67  ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
Query: 129 DLRHLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVLTQIYRV 177
           D +  R V+TE+A  +  E  +  ++ETSA +  NV  AF E + Q+  V
Sbjct: 127 D-KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAV 175

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score =  127 bits (320), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 70/181 (38%), Positives = 106/181 (58%), Gaps = 11/181 (6%)
Query: 7   DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK------ 60
           D DYDYL K++ +GDSGVGK+  L R+T N+F+ +  +T+G++F  + +  D +      
Sbjct: 5   DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGAS 64
Query: 61  ----IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD 116
                V  Q+WDTAG ER+R++T+A++R A G LL +D+T   +F NV  W  +L+ +  
Sbjct: 65  GKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAY 124
Query: 117 -SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
             N  I+L+GNKADL   R V+   A   AE+    + ETSA    NVE +   +L  I 
Sbjct: 125 CENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIX 184
Query: 176 R 176
           +
Sbjct: 185 K 185

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score =  123 bits (308), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 96/169 (56%), Gaps = 6/169 (3%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           +K+VL GD+ VGKS+ L R  +NEF     +T+GV+F  +++  D +    Q+WDTAGQE
Sbjct: 29  YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           R+R+I  +Y+R A G LL+YDVT   +F N+  W+  + D     + IMLVGNKAD+R  
Sbjct: 89  RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDT 148
Query: 134 RAVSTEDATA--FAER----ENTFFMETSALESMNVENAFTEVLTQIYR 176
            A   +      F E+        F ETSA +  N+  A   +  ++ +
Sbjct: 149 AATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKK 197

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score =  122 bits (306), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 105/166 (63%), Gaps = 9/166 (5%)
Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCD-DKIVKAQIWDTAG 71
           + KV+++GDSGVGK++L+ R+  +++S + K+TIG +F T+ +  D DK+   Q+WDTAG
Sbjct: 8   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSN----IVIMLVGNK 127
           QER++++  A+YRGA   +LVYDVT   +FEN++ W  E   H + N       +++GNK
Sbjct: 68  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 128 ADLRHLRAVSTEDAT---AFAERENTFFMETSALESMNVENAFTEV 170
            D    + + +E +    A +  +   F+ TSA  ++NV+ AF E+
Sbjct: 128 IDAEESKKIVSEKSAQELAKSLGDIPLFL-TSAKNAINVDTAFEEI 172

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/147 (41%), Positives = 91/147 (61%), Gaps = 2/147 (1%)
Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
           +FK+++IGDS VGK+ L  RF    F   +++TIGV+F  R++  D + +K Q+WDTAGQ
Sbjct: 20  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 73  ERYR-AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSN-IVIMLVGNKADL 130
           ER+R ++   YYR     + VYD+T   +F ++  W++E + H  +N I  +LVGNK DL
Sbjct: 80  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139
Query: 131 RHLRAVSTEDATAFAERENTFFMETSA 157
           R    V T+ A  FA+  +    ETSA
Sbjct: 140 RSAIQVPTDLAQKFADTHSMPLFETSA 166

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/147 (41%), Positives = 90/147 (61%), Gaps = 2/147 (1%)
Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
           +FK+++IGDS VGK+ L  RF    F   +++TIGV+F  R++  D + +K Q+WDTAGQ
Sbjct: 29  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 73  ERYR-AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSN-IVIMLVGNKADL 130
           ER+R ++   YYR     + VYD T   +F ++  W++E + H  +N I  +LVGNK DL
Sbjct: 89  ERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 148
Query: 131 RHLRAVSTEDATAFAERENTFFMETSA 157
           R    V T+ A  FA+  +    ETSA
Sbjct: 149 RSAIQVPTDLAQKFADTHSXPLFETSA 175

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 59/154 (38%), Positives = 89/154 (57%), Gaps = 1/154 (0%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K+V++G+  VGKS+++ R+ +  F+ + K TIGV+F  R I+ +D+ V+  +WDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
            + AIT AYYRGA   +LV+  T   +FE +  W +++      +I   LV NK DL   
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDD 124
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAF 167
             +  E+A   A+R    F  TS  E +NV   F
Sbjct: 125 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVF 158

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/181 (33%), Positives = 94/181 (51%), Gaps = 6/181 (3%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK+VL+GD G GK+  + R    EF  +  +T+GVE        +   +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           +Y  +   YY  A  A++++DVT  VT++NV  W ++L      NI I+L GNK D++  
Sbjct: 71  KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKD- 128
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDPAALP 193
           R V  + +  F  ++N  + + SA  + N E  F   L    +++    LE    PA  P
Sbjct: 129 RKVKAK-SIVFHRKKNLQYYDISAKSNYNFEKPF---LWLARKLIGDPNLEFVAMPALAP 184
Query: 194 K 194
Sbjct: 185 P 185

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 98/203 (48%), Gaps = 46/203 (22%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIR----------------- 56
           +K VL+G+S VGKS+++ R T++ F   + +TIG  F T  +                  
Sbjct: 8   YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 57  -----------------------CDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93
                                  C+   +K  IWDTAGQERY +I   YYRGA  A++V+
Sbjct: 68  INSINDDNNVIITNQHNNYNENLCN---IKFDIWDTAGQERYASIVPLYYRGATCAIVVF 124
Query: 94  DVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFM 153
           D++   T +  + W+ +L+    SN +I+LV NK D    + V   +   +A+  N  F+
Sbjct: 125 DISNSNTLDRAKTWVNQLK--ISSNYIIILVANKIDKNKFQ-VDILEVQKYAQDNNLLFI 181
Query: 154 ETSALESMNVENAFTEVLTQIYR 176
           +TSA    N++N F  +  +IY+
Sbjct: 182 QTSAKTGTNIKNIFYMLAEEIYK 204

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score =  101 bits (251), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 94/181 (51%), Gaps = 6/181 (3%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK+VL+GD G GK+  + R    EF  +  +T+GVE        +   +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           ++  +   YY  A  A++++DVT  VT++NV  W ++L      NI I+L GNK D++  
Sbjct: 71  KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKD- 128
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDPAALP 193
           R V  + +  F  ++N  + + SA  + N E  F   L    +++    LE    PA  P
Sbjct: 129 RKVKAK-SIVFHRKKNLQYYDISAKSNYNFEKPF---LWLARKLIGDPNLEFVAMPALAP 184
Query: 194 K 194
Sbjct: 185 P 185

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score =  100 bits (250), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 94/181 (51%), Gaps = 6/181 (3%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK+VL+GD G GK+  + R    EF  +  +T+GVE        +   +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           ++  +   YY  A  A++++DVT  VT++NV  W ++L      NI I+L GNK D++  
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKD- 128
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDPAALP 193
           R V  + +  F  ++N  + + SA  + N E  F   L    +++    LE    PA  P
Sbjct: 129 RKVKAK-SIVFHRKKNLQYYDISAKSNYNFEKPF---LWLARKLIGDPNLEFVAMPALAP 184
Query: 194 K 194
Sbjct: 185 P 185

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score =  100 bits (250), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 93/181 (51%), Gaps = 6/181 (3%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK+VL+GD G GK+  + R    EF  +   T+GVE        +   +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           ++  +   YY  A  A++++DVT  VT++NV  W ++L      NI I+L GNK D++  
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKD- 128
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDPAALP 193
           R V  + +  F  ++N  + + SA  + N E  F   L    +++    LE    PA  P
Sbjct: 129 RKVKAK-SIVFHRKKNLQYYDISAKSNYNFEKPF---LWLARKLIGDPNLEFVAMPALAP 184
Query: 194 K 194
Sbjct: 185 P 185

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score =  100 bits (250), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 93/181 (51%), Gaps = 6/181 (3%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK+VL+GD G GK+  + R    EF  +  +T+GVE        +   +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           ++  +   YY  A  A++ +DVT  VT++NV  W ++L      NI I+L GNK D++  
Sbjct: 71  KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKD- 128
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDPAALP 193
           R V  + +  F  ++N  + + SA  + N E  F   L    +++    LE    PA  P
Sbjct: 129 RKVKAK-SIVFHRKKNLQYYDISAKSNYNFEKPF---LWLARKLIGDPNLEFVAXPALAP 184
Query: 194 K 194
Sbjct: 185 P 185

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score =  100 bits (249), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 94/181 (51%), Gaps = 6/181 (3%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK+VL+GD G GK+  + R    EF  +  +T+GVE        +   +K  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           ++  +   YY  A  A++++DVT  VT++NV  W ++L      NI I+L GNK D++  
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKD- 133
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDPAALP 193
           R V  + +  F  ++N  + + SA  + N E  F   L    +++    LE    PA  P
Sbjct: 134 RKVKAK-SIVFHRKKNLQYYDISAKSNYNFEKPF---LWLARKLIGDPNLEFVAMPALAP 189
Query: 194 K 194
Sbjct: 190 P 190

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score =  100 bits (249), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 94/181 (51%), Gaps = 6/181 (3%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK+VL+GD G GK+  + R    EF  +  +T+GVE        +   +K  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           ++  +   YY  A  A++++DVT  VT++NV  W ++L      NI I+L GNK D++  
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKD- 121
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDPAALP 193
           R V  + +  F  ++N  + + SA  + N E  F   L    +++    LE    PA  P
Sbjct: 122 RKVKAK-SIVFHRKKNLQYYDISAKSNYNFEKPF---LWLARKLIGDPNLEFVAMPALAP 177
Query: 194 K 194
Sbjct: 178 P 178

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score =  100 bits (249), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 53/142 (37%), Positives = 81/142 (57%), Gaps = 5/142 (3%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKI-VKAQIWDTAGQ 72
            K+V++GD   GK++L + F +  F  + K TIG++F  R I     + V  QIWD  GQ
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERW---LKELRDHTDSNIVIMLVGNKAD 129
                +   Y  GA G LLVYD+T + +FEN+E W   +K++ + +++  ++ LVGNK D
Sbjct: 67  TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126
Query: 130 LRHLRAVSTEDATAFAERENTF 151
           L H+R +  E    F + EN F
Sbjct: 127 LEHMRTIKPEKHLRFCQ-ENGF 147

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score =  100 bits (248), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 61/181 (33%), Positives = 93/181 (51%), Gaps = 6/181 (3%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK+VL+GD G GK+  + R    EF  +  +TIGVE    S   +   +K  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           ++  +   YY  A  A++++DVT  +T++NV  W ++L      NI I+L GNK D++  
Sbjct: 73  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLV-RVCENIPIVLCGNKVDVKE- 130
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDPAALP 193
           R V  +  T F  ++N  + + SA  + N E  F   L    ++     LE    PA  P
Sbjct: 131 RKVKAKTIT-FHRKKNLQYYDISAKSNYNFEKPF---LWLARKLAGNPQLEFVASPALAP 186
Query: 194 K 194
Sbjct: 187 P 187

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score =  100 bits (248), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 85/154 (55%), Gaps = 3/154 (1%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK+VL+GD G GK+  + R    EF  +  +T+GVE        +   +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           ++  +   YY  A  A++++DVT  VT++NV  W ++L      NI I+L GNK D++  
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKD- 128
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAF 167
           R V  + +  F  ++N  + + SA  + N E  F
Sbjct: 129 RKVKAK-SIVFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 84/154 (54%), Gaps = 3/154 (1%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK+VL+GD G GK+  + R    EF  +   T+GVE        +   +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           ++  +   YY  A  A++++DVT  VT++NV  W ++L      NI I+L GNK D++  
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKD- 128
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAF 167
           R V  + +  F  ++N  + + SA  + N E  F
Sbjct: 129 RKVKAK-SIVFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 85/154 (55%), Gaps = 3/154 (1%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK+VL+GD G GK+  + R    EF  +  +T+GVE        +   +K  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           ++  +   YY  A  A++++DVT  VT++NV  W ++L      NI I+L GNK D++  
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKD- 128
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAF 167
           R V  + +  F  ++N  + + SA  + N E  F
Sbjct: 129 RKVKAK-SIVFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 93/181 (51%), Gaps = 6/181 (3%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK+VL+GD G GK+  + R    EF  +  +T+GVE        +   +K  +WDTAG E
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           ++  +   YY  A  A++++DVT  VT++NV  W ++L      NI I+L GNK D++  
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKD- 128
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDPAALP 193
           R V  + +  F  ++N  + + SA  + N E  F   L    +++    LE    PA  P
Sbjct: 129 RKVKAK-SIVFHRKKNLQYYDISAKSNYNFEKPF---LWLARKLIGDPNLEFVAMPALAP 184
Query: 194 K 194
Sbjct: 185 P 185

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 97.4 bits (241), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 88/166 (53%), Gaps = 3/166 (1%)
Query: 2   GAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKI 61
           G+  A  +    FK+VL+GD G GK+  + R    EF  +  +T+GVE        +   
Sbjct: 1   GSMAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP 60
Query: 62  VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVI 121
           +K  +WDTAG E++  +   YY  A  A++++DVT  VT++NV  W ++L      NI I
Sbjct: 61  IKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPI 119
Query: 122 MLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAF 167
           +L GNK D++  R V  + +  F  ++N  + + SA  + N E  F
Sbjct: 120 VLCGNKVDIKD-RKVKAK-SIVFHRKKNLQYYDISAKSNYNFEKPF 163

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 97.4 bits (241), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 85/154 (55%), Gaps = 3/154 (1%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK+VL+GD G GK+  + R    EF  +  +TIGVE    S   +   +K  +WDTAG E
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           ++  +   YY  A  A++++DVT  +T++NV  W ++L      NI I+L GNK D++  
Sbjct: 66  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLV-RVCENIPIVLCGNKVDVKE- 123
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAF 167
           R V  +  T F  ++N  + + SA  + N E  F
Sbjct: 124 RKVKAKTIT-FHRKKNLQYYDISAKSNYNFEKPF 156

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 85/154 (55%), Gaps = 3/154 (1%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK+VL+GD G GK+  + R    EF  +  +TIGVE    S   +   +K  +WDTAG E
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           ++  +   YY  A  A++++DVT  +T++NV  W ++L      NI I+L GNK D++  
Sbjct: 65  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLV-RVCENIPIVLCGNKVDVKE- 122
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAF 167
           R V  +  T F  ++N  + + SA  + N E  F
Sbjct: 123 RKVKAKTIT-FHRKKNLQYYDISAKSNYNFEKPF 155

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 93/181 (51%), Gaps = 6/181 (3%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK+VL+GD G GK+  + R    E   +  +T+GVE        +   +K  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           ++  +   YY  A  A++++DVT  VT++NV  W ++L      NI I+L GNK D++  
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKD- 133
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDPAALP 193
           R V  + +  F  ++N  + + SA  + N E  F   L    +++    LE    PA  P
Sbjct: 134 RKVKAK-SIVFHRKKNLQYYDISAKSNYNFEKPF---LWLARKLIGDPNLEFVAMPALAP 189
Query: 194 K 194
Sbjct: 190 P 190

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 97.1 bits (240), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 91/163 (55%), Gaps = 2/163 (1%)
Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
           L KV+++G  GVGKS L  +F  +EF  + + T    +  + +  D + V+  I DTAGQ
Sbjct: 14  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 72
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLR 131
           E Y AI   Y+R   G L V+ +T   +F     + ++ LR   D N+  +LVGNK+DL 
Sbjct: 73  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132
Query: 132 HLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
             R VS E+A   AE+ N  ++ETSA    NV+  F +++ +I
Sbjct: 133 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 96.7 bits (239), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 90/163 (55%), Gaps = 2/163 (1%)
Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
           L KV+++G  GVGKS L  +F  +EF +E       +   + +  D + V+  I DTAGQ
Sbjct: 18  LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 76
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLR 131
           E Y AI   Y+R   G L V+ +T   +F     + ++ LR   D N+  +LVGNK+DL 
Sbjct: 77  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136
Query: 132 HLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
             R VS E+A   AE+ N  ++ETSA    NV+  F +++ +I
Sbjct: 137 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 96.7 bits (239), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 90/163 (55%), Gaps = 2/163 (1%)
Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
           L KV+++G  GVGKS L  +F  +EF +E       +   + +  D + V+  I DTAGQ
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 64
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLR 131
           E Y AI   Y+R   G L V+ +T   +F     + ++ LR   D N+  +LVGNK+DL 
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 132 HLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
             R VS E+A   AE+ N  ++ETSA    NV+  F +++ +I
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 84/154 (54%), Gaps = 3/154 (1%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK+VL+GD G GK+  + R    EF  +  +T+GVE        +   +K  +WDTAG E
Sbjct: 7   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           ++  +   YY  A  A++++DVT  VT++NV  W ++L      NI I+L GNK D++  
Sbjct: 67  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKD- 124
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAF 167
           R V  + +  F  ++N  + + SA  + N E  F
Sbjct: 125 RKVKAK-SIVFHRKKNLQYYDISAKSNYNFEKPF 157

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 91/163 (55%), Gaps = 2/163 (1%)
Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
           L KV+++G  GVGKS L  +F  +EF  + + T    +  + +  D + V+  I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 62
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLR 131
           E Y AI   Y+R   G L V+ +T   +F     + ++ LR   D N+  +LVGNK+DL 
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122
Query: 132 HLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
             R VS E+A   A++ N  ++ETSA    NV+  F +++ +I
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 93.2 bits (230), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 83/158 (52%), Gaps = 1/158 (0%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIG-VEFATRSIRCDDKIVKAQIWDTAGQ 72
           +K+ LIGD GVGK+  ++R     F     +T+G V      +     ++K  +WDTAGQ
Sbjct: 12  YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH 132
           E+   +   YY GA GA+L +DVT  +T +N+ RW+KE +    +   I++  NK D+++
Sbjct: 72  EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 133 LRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV 170
            + +S +      + +N  + E SA  + N    F  +
Sbjct: 132 RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHL 169

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 93.2 bits (230), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 89/163 (54%), Gaps = 2/163 (1%)
Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
           L KV+++G  GVGKS L  +F  +EF +E       +   + +  D + V+  I DTAG 
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGL 64
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLR 131
           E Y AI   Y+R   G L V+ +T   +F     + ++ LR   D N+  +LVGNK+DL 
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 132 HLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
             R VS E+A   AE+ N  ++ETSA    NV+  F +++ +I
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 3/164 (1%)
Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
           L KV+++G  GVGKS L  +F  +EF +E       +   + +  D + V+  I DTAG 
Sbjct: 7   LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGL 65
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSN-IVIMLVGNKADL 130
           E Y AI   Y+R   G LLV+ +T H +F     + ++ LR   + + I +++VGNK+DL
Sbjct: 66  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 125
Query: 131 RHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              R V  E+A + AE     ++ETSA    NV+  F +++ +I
Sbjct: 126 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 3/164 (1%)
Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
           L KV+++G  GVGKS L  +F  +EF  + + T    +  + +  D + V+  I DTAG 
Sbjct: 3   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 61
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSN-IVIMLVGNKADL 130
           E Y AI   Y+R   G LLV+ +T H +F     + ++ LR   + + I +++VGNK+DL
Sbjct: 62  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 121
Query: 131 RHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              R V  E+A + AE     ++ETSA    NV+  F +++ +I
Sbjct: 122 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 87/164 (53%), Gaps = 2/164 (1%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           KVV++G   VGK++L  +F   EFS     T+   ++       D+     + DTAGQ+ 
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEF-HLHLVDTAGQDE 84
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRD-HTDSNIVIMLVGNKADLRHL 133
           Y  +  ++  G  G +LVY VT   +F+ +E   ++L + H  + + ++LVGNKADL   
Sbjct: 85  YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRV 177
           R V   +    AE     FME+SA E+   +  FT+V+ +I RV
Sbjct: 145 REVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARV 188

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 87/171 (50%), Gaps = 8/171 (4%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+ + G +GVGKS L+ RF    F  E   T+   +  ++   DD++V  +I DTAGQE 
Sbjct: 30  KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-IDDEVVSMEILDTAGQED 88
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHT--DSNIVIMLVGNKADLRH 132
                  + R   G +LVYD+T   +FE V   LK + D      N+ ++LVGNKADL H
Sbjct: 89  -TIQREGHMRWGEGFVLVYDITDRGSFEEVLP-LKNILDEIKKPKNVTLILVGNKADLDH 146
Query: 133 LRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKAL 183
            R VSTE+    A      F E SA      E   TE+  ++ R V R+ +
Sbjct: 147 SRQVSTEEGEKLATELACAFYECSACTG---EGNITEIFYELCREVRRRRM 194

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           +K+V++G  GVGKS L  +  +N F  E   TI   +  + +  D +     I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIMLVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++  + ++++   DS ++ ++LVGNK DL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123
Query: 133 LRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
            R V T+ A   A      F+ETSA     V++AF  ++ +I
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 84.0 bits (206), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 87/162 (53%), Gaps = 3/162 (1%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           +K+V++G  GVGKS L  +  +N F  E   TI   +  + +  D +     I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIMLVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++  + ++++   DS ++ ++LVGNK+DL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 133 LRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
            R V T+ A   A      F+ETSA     V++AF  ++ +I
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 83.6 bits (205), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 79/147 (53%), Gaps = 2/147 (1%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +F ++ F  +   TI   +  + +  DD+  +  I DTAGQE + A+   Y R 
Sbjct: 18  KSALTIQFIQSYFVTDYDPTIEDSYTKQCV-IDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 86  AVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAF 144
             G LLV+ VT   +FE + ++ ++ LR        ++L+GNKADL H R V+ E+    
Sbjct: 77  GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 145 AERENTFFMETSALESMNVENAFTEVL 171
           A +    +ME SA   MNV+ AF E++
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAFHELV 163

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 3/165 (1%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           +K+V++G  GVGKS L  +F +  F  E   TI   +  + +  D +    +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLRH 132
           ++ A+   Y +   G  LVY +T   TF +++   ++ LR     ++ ++LVGNK DL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 133 LRAVSTEDATAFAERE-NTFFMETSALESMNVENAFTEVLTQIYR 176
            R V  E     A +  N  F+E+SA   +NV   F +++ QI R
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           +K+V++G  GVGKS L  +  +N F  E   TI   +  + +  D +     I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 133 LRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
            R V +  A   A      ++ETSA     VE+AF  ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           +K+V++G  GVGKS L  +  +N F  E   TI   +  + +  D +     I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAG 122
Query: 133 LRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
            R V +  A   A      ++ETSA     VE+AF  ++ +I
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 3/165 (1%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           +K+V++G  GVGKS L  +F +  F  +   TI   +  + +  D +    +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDAQQCMLEILDTAGTE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLRH 132
           ++ A+   Y +   G  LVY +T   TF +++   ++ LR     ++ ++LVGNK DL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 122
Query: 133 LRAVSTEDATAFAER-ENTFFMETSALESMNVENAFTEVLTQIYR 176
            R V  E     A +  N  F+E+SA   +NV   F +++ QI R
Sbjct: 123 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINR 167

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           +K+V++G  GVGKS L  +  +N F  E   TI   +  + +  D +     I DTAGQE
Sbjct: 4   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 133 LRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
            R V +  A   A      ++ETSA     VE+AF  ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           +K+V++G  GVGKS L  +  +N F  E   TI   +  + +  D +     I DTAGQE
Sbjct: 4   YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 133 LRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
            R V +  A   A      ++ETSA     VE+AF  ++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 3/165 (1%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           +K+V++G  GVGKS L  +F +  F  +   TI   +  + +  D +    +I DTAG E
Sbjct: 6   YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDAQQCMLEILDTAGTE 64
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLRH 132
           ++ A+   Y +   G  LVY +T   TF +++   ++ LR     ++ ++LVGNK DL  
Sbjct: 65  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 124
Query: 133 LRAVSTEDATAFAER-ENTFFMETSALESMNVENAFTEVLTQIYR 176
            R V  E     A +  N  F+E+SA   +NV   F +++ QI R
Sbjct: 125 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINR 169

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 12/179 (6%)
Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
             K V +GD  VGK+ +L  +T N+F  +   T+   F+  ++  D +IV   +WDTAGQ
Sbjct: 9   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGQIVNLGLWDTAGQ 67
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR 131
           E Y  +    YRGA   +L + +    ++ENV ++W+ ELR     N+ I+LVG K DLR
Sbjct: 68  EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 126
Query: 132 --------HLRAV-STEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRK 181
                   H   + ST+      +     ++E S+    NV+  F   +  + +   RK
Sbjct: 127 DDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 185

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 3/165 (1%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           +K+V++G  GVGKS L  +F +  F  +   TI   +  + +  D +    +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLRH 132
           ++ A+   Y +   G  LVY +T   TF +++   ++ LR     ++ ++LVGNK DL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 133 LRAVSTEDATAFAERE-NTFFMETSALESMNVENAFTEVLTQIYR 176
            R V  E     A +  N  F+E+SA   +NV   F +++ QI R
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 81/160 (50%), Gaps = 2/160 (1%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+ ++G   VGKS+L  +F   +F   +  TI   F T+ I  + +    Q+ DTAGQ+ 
Sbjct: 6   KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIMLVGNKADLRHL 133
           Y      Y     G +LVY VT   +FE ++    +L D      I IMLVGNK DL   
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 124
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQ 173
           R +S E+  A AE  N  F+E+SA E+    + F  ++ +
Sbjct: 125 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 164

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 80/160 (50%), Gaps = 2/160 (1%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+ ++G   VGKS+L  +F   +F      TI   F T+ I  + +    Q+ DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIMLVGNKADLRHL 133
           Y      Y     G +LVY VT   +FE ++    +L D      I IMLVGNK DL   
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQ 173
           R +S E+  A AE  N  F+E+SA E+    + F  ++ +
Sbjct: 127 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++  D K V   +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 64
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
            Y  +    Y     +L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR 
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 123
Query: 132 -----------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVL 171
                       L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 175

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 82/164 (50%), Gaps = 2/164 (1%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+ ++G   VGKS+L  +F   +F      TI   F T+ I  + +    Q+ DTAGQ+ 
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIMLVGNKADLRHL 133
           Y      Y     G +LVY VT   +FE ++    +L D      I IMLVGNK DL   
Sbjct: 62  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 121
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRV 177
           R +S E+  A AE  N  F+E+SA E+    + F  ++ +  ++
Sbjct: 122 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKI 165

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 80/160 (50%), Gaps = 2/160 (1%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+ ++G   VGKS+L  +F   +F      TI   F T+ I  + +    Q+ DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIMLVGNKADLRHL 133
           Y      Y     G +LVY VT   +FE ++    +L D      I IMLVGNK DL   
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQ 173
           R +S E+  A AE  N  F+E+SA E+    + F  ++ +
Sbjct: 127 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++  D K V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
            Y  +    Y     +L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR 
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -----------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVL 171
                       L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++  D K V   +WDTAGQE
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 66
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
            Y  +    Y     +L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR 
Sbjct: 67  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 125
Query: 132 -----------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVL 171
                       L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 126 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 177

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++  D K V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
            Y  +    Y     +L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR 
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -----------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVL 171
                       L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++  D K V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDSKPVNLGLWDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
            Y  +    Y      L+ + +    ++ENV  +W  E+R H  S  +I LVG K DLR 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGTKLDLRD 121
Query: 132 -----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
                       L  ++     A A E ++  ++E SAL    ++  F E +
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAI 173

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 3/120 (2%)
Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
             K V +GD  VGK+ +L  +T N F  +   T+   F+  ++  D   V   +WDTAGQ
Sbjct: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGNTVNLGLWDTAGQ 64
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR 131
           E Y  +    YRGA   +L + +    ++ENV ++W+ ELR H    + I+LVG K DLR
Sbjct: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLR 123

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 80/167 (47%), Gaps = 14/167 (8%)
Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
             K V +GD  VGK+ +L  +T N F  +   T+   F+  ++  D   V   +WDTAGQ
Sbjct: 6   FIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 64
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR 131
           E Y  +    YRGA   LL + +    ++EN+ ++WL EL+ H    I I+LVG K DLR
Sbjct: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELK-HYAPGIPIVLVGTKLDLR 123
Query: 132 --------HLRAVSTEDATAFAERE---NTFFMETSALESMNVENAF 167
                   H  A S   A     R+      ++E S+    NV+  F
Sbjct: 124 DDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++  D K V   +WDTAGQE
Sbjct: 10  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDSKPVNLGLWDTAGQE 68
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
            Y  +    Y      L+ + +    ++ENV  +W  E+R H  S  +I LVG K DLR 
Sbjct: 69  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGTKLDLRD 127
Query: 132 -----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
                       L  ++     A A E ++  ++E SAL    ++  F E +
Sbjct: 128 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAI 179

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N FS E   T+   ++  ++  D K V   +WDTAGQE 
Sbjct: 15  KCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 73
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR  
Sbjct: 74  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 132
Query: 132 ----------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVL 171
                      L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 133 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 183

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 79/172 (45%), Gaps = 16/172 (9%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++  D K V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
            Y  +    Y      L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -----------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVL 171
                       L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++  D K V   +WDTAGQE
Sbjct: 11  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDSKPVNLGLWDTAGQE 69
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
            Y  +    Y      L+ + +    ++ENV  +W  E+R H  S  +I LVG K DLR 
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGTKLDLRD 128
Query: 132 -----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
                       L  ++     A A E ++  ++E SAL    ++  F E +
Sbjct: 129 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAI 180

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 81/177 (45%), Gaps = 16/177 (9%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++  D K V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
            Y  +    Y      L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -----------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVLTQIYR 176
                       L  ++     A A+      ++E SAL    ++  F E +  + +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLK 178

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 80/161 (49%), Gaps = 5/161 (3%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           ++V + G  GVGKS+L+ RF +  F      T+   +  + I CD  I   QI DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVE---RWLKELRDHTDSNIVIMLVGNKADL 130
           ++ A+           +LVY +T   + E ++     + E++   +S I IMLVGNK D 
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVES-IPIMLVGNKCDE 121
Query: 131 RHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVL 171
              R V + +A A A      FMETSA  + NV+  F E+L
Sbjct: 122 SPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 162

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 79/172 (45%), Gaps = 16/172 (9%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++  D K V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
            Y  +    Y      L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -----------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVL 171
                       L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 79/172 (45%), Gaps = 16/172 (9%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++  D K V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
            Y  +    Y      L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -----------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVL 171
                       L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 79/172 (45%), Gaps = 16/172 (9%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++  D K V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
            Y  +    Y      L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -----------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVL 171
                       L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 79/172 (45%), Gaps = 16/172 (9%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++  D K V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
            Y  +    Y      L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -----------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVL 171
                       L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL  F+++EF      T+  E     I  D K V+  +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 85
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + V    + EN+ E+W+ E++ H   N+ I+LV NK DLR  
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVANKKDLRSD 144
Query: 132 -HLR---------AVSTEDATAFAERENTF-FMETSALESMNVENAF 167
            H+R          V T+D  A A R   + ++E SA     V   F
Sbjct: 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF 191

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 79/172 (45%), Gaps = 16/172 (9%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++  D K V   +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 89
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
            Y  +    Y      L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR 
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 148
Query: 132 -----------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVL 171
                       L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 79/172 (45%), Gaps = 16/172 (9%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++  D K V   +WDTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 69
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
            Y  +    Y      L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR 
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 128
Query: 132 -----------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVL 171
                       L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 129 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 180

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 79/172 (45%), Gaps = 16/172 (9%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++  D K V   +WDTAGQE
Sbjct: 23  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 81
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
            Y  +    Y      L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR 
Sbjct: 82  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 140
Query: 132 -----------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVL 171
                       L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 141 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 192

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 80/169 (47%), Gaps = 16/169 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           KVVL+GD G GK++LL  F    F  ES +    E    +++   K V   IWDTAGQ+ 
Sbjct: 36  KVVLVGDGGCGKTSLLMVFADGAFP-ESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDD 94
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
           Y  +   +Y  A   LL +DVT   +F+N+  RW  E+ +H    + I++VG K DLR  
Sbjct: 95  YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV-NHFCKKVPIIVVGCKTDLRKD 153
Query: 132 -----HLRAVSTEDATAFAERE------NTFFMETSALESMNVENAFTE 169
                 LR    E  T    +E         ++E SA    NV   F E
Sbjct: 154 KSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQE 202

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++  D K V   +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 63
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
            Y  +    Y      L+ + +    +FENV  +W  E+R H   +  I+LVG K DLR 
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRD 122
Query: 132 -----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
                       L  ++     A A E  +  ++E SAL    ++  F E +
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAI 174

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL  F++++F      T+  E     I  D K V+  +WDTAGQE 
Sbjct: 11  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 69
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + +    + EN+ E+W  E++ H   N+ I+LVGNK DLR  
Sbjct: 70  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 128
Query: 132 -HLR---------AVSTEDATAFAERENTF-FMETSALESMNVENAF 167
            H R          V  E+    A R   F +ME SA     V   F
Sbjct: 129 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 175

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++  D K V   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
            Y  +    Y      L+ + +    +FENV  +W  E+R H   +  I+LVG K DLR 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRD 121
Query: 132 -----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
                       L  ++     A A E  +  ++E SAL    ++  F E +
Sbjct: 122 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAI 173

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 77.0 bits (188), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++  D K V   +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 63
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
            Y  +    Y      L+ + +    +FENV  +W  E+R H   +  I+LVG K DLR 
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRD 122
Query: 132 -----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
                       L  ++     A A E  +  ++E SAL    ++  F E +
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAI 174

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 77.0 bits (188), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL  F++++F      T+  E     I  D K V+  +WDTAGQE 
Sbjct: 8   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + +    + EN+ E+W  E++ H   N+ I+LVGNK DLR  
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 125
Query: 132 -HLR---------AVSTEDATAFAERENTF-FMETSALESMNVENAF 167
            H R          V  E+    A R   F +ME SA     V   F
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL  F++++F      T+  E     I  D K V+  +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + +    + EN+ E+W  E++ H   N+ I+LVGNK DLR  
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 132 -HLR---------AVSTEDATAFAERENTF-FMETSALESMNVENAF 167
            H R          V  E+    A R   F +ME SA     V   F
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL  F++++F      T+  E     I  D K V+  +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + +    + EN+ E+W  E++ H   N+ I+LVGNK DLR  
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 132 -HLR---------AVSTEDATAFAERENTF-FMETSALESMNVENAF 167
            H R          V  E+    A R   F +ME SA     V   F
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL  F++++F      T+  E     I  D K V+  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + +    + EN+ E+W  E++ H   N+ I+LVGNK DLR  
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 132 -HLR---------AVSTEDATAFAERENTF-FMETSALESMNVENAF 167
            H R          V  E+    A R   F +ME SA     V   F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL  F++++F      T+  E     I  D K V+  +WDTAGQE 
Sbjct: 10  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 68
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + +    + EN+ E+W  E++ H   N+ I+LVGNK DLR  
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 127
Query: 132 -HLR---------AVSTEDATAFAERENTF-FMETSALESMNVENAF 167
            H R          V  E+    A R   F +ME SA     V   F
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 3/120 (2%)
Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
             K V +GD  VGK+ LL  +T N F  +   T+   F+  ++  +   V   +WDTAGQ
Sbjct: 8   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGATVNLGLWDTAGQ 66
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR 131
           E Y  +    YRGA   +L + +    ++ENV ++W+ EL+ H    + I+LVG K DLR
Sbjct: 67  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIVLVGTKLDLR 125

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL  F++++F      T+  E     I  D K V+  +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + +    + EN+ E+W  E++ H   N+ I+LVGNK DLR  
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 132 -HLR---------AVSTEDATAFAERENTF-FMETSALESMNVENAF 167
            H R          V  E+    A R   F +ME SA     V   F
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL  F++++F      T+  E     I  D K V+  +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + +    + EN+ E+W  E++ H   N+ I+LVGNK DLR  
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFXPNVPIILVGNKKDLRQD 144
Query: 132 -HLR---------AVSTEDATAFAERENTF-FMETSALESMNVENAF 167
            H R          V +E+    A R + F ++E SA     V   F
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K VL+GD  VGK++L+  +T N +  E   T    F+   +  D + V+ Q+ DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSA-VVSVDGRPVRLQLCDTAGQDE 80
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRH- 132
           +  +    Y      LL + V    +F+NV E+W+ E+R H      I+LVG ++DLR  
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLRED 139
Query: 133 -----------LRAVSTEDATAFAER-ENTFFMETSALESMNVENAF 167
                       + V  E A   AE  +   ++E SAL   N++  F
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL  F++++F      T+  E     I  D K V+  +WDTAGQE 
Sbjct: 8   KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + +    + EN+ E+W  E++ H   N+ I+LVGNK DLR  
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 125
Query: 132 -HLR---------AVSTEDATAFAERENTF-FMETSALESMNVENAF 167
            H R          V  E+    A R   F +ME SA     V   F
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 78/172 (45%), Gaps = 16/172 (9%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N    E   T+   ++  ++  D K V   +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 89
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
            Y  +    Y      L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR 
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 148
Query: 132 -----------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVL 171
                       L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 78/172 (45%), Gaps = 16/172 (9%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++  D K V   +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
            Y  +    Y      L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -----------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVL 171
                       L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 78/172 (45%), Gaps = 16/172 (9%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++  D K V   +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
            Y  +    Y      L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 132 -----------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVL 171
                       L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL  F++++F      T+  E     I  D K V+  +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + +    + EN+ E+W  E++ H   N+ I+LVGNK DLR  
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRQD 144
Query: 132 -HLR---------AVSTEDATAFAERENTF-FMETSALESMNVENAF 167
            H R          V +E+    A R + F ++E SA     V   F
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 78/172 (45%), Gaps = 16/172 (9%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++  D K V   +WDTAG E
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLE 65
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
            Y  +    Y      L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR 
Sbjct: 66  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 124
Query: 132 -----------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVL 171
                       L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 125 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 176

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 78/172 (45%), Gaps = 16/172 (9%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++  D K V   +WDTAG E
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLE 89
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR- 131
            Y  +    Y      L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR 
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 148
Query: 132 -----------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVL 171
                       L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 81/191 (42%), Gaps = 35/191 (18%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++  D K V   +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 64
Query: 74  RYRAITSAYYRGAVGA-------------------LLVYDVTRHVTFENVE-RWLKELRD 113
            Y  +    Y   VG                    L+ + +    +FENV  +W  E+R 
Sbjct: 65  DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 114 HTDSNIVIMLVGNKADLR------------HLRAVSTEDATAFAERENTF-FMETSALES 160
           H   N  I+LVG K DLR             L  ++     A A+      ++E SAL  
Sbjct: 125 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 183
Query: 161 MNVENAFTEVL 171
             ++  F E +
Sbjct: 184 RGLKTVFDEAI 194

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 73.2 bits (178), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 78/148 (52%), Gaps = 3/148 (2%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +F +  F  E   TI   +  +    D++     + DTAGQE + A+   Y R 
Sbjct: 31  KSALTIQFFQKIFVPEYDPTIEDSYL-KHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 86  AVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAF 144
             G L+VY VT   +FE+V+R+ +  LR     +  ++LV NK DL HLR V+ +     
Sbjct: 90  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 145 AERENTFFMETSALE-SMNVENAFTEVL 171
           A + N  ++ETSA +  +NV+  F +++
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDLV 177

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL   ++++F      T+  E     I  D K V+  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + +    + EN+ E+W  E++ H   N+ I+LVGNK DLR  
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 132 -HLR---------AVSTEDATAFAERENTF-FMETSALESMNVENAF 167
            H R          V  E+    A R   F +ME SA     V   F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL   ++++F      T+  E     I  D K V+  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + +    + EN+ E+W  E++ H   N+ I+LVGNK DLR  
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 132 -HLR---------AVSTEDATAFAERENTF-FMETSALESMNVENAF 167
            H R          V  E+    A R   F +ME SA     V   F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL   ++++F      T+  E     I  D K V+  +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + +    + EN+ E+W  E++ H   N+ I+LVGNK DLR  
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 122
Query: 132 -HLR---------AVSTEDATAFAERENTF-FMETSALESMNVENAF 167
            H R          V  E+    A R   F +ME SA     V   F
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL   ++++F      T+  E     I  D K V+  +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + +    + EN+ E+W  E++ H   N+ I+LVGNK DLR  
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 122
Query: 132 -HLR---------AVSTEDATAFAERENTF-FMETSALESMNVENAF 167
            H R          V  E+    A R   F +ME SA     V   F
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL   ++++F      T+  E     I  D K V+  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + +    + EN+ E+W  E++ H   N+ I+LVGNK DLR  
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 132 -HLR---------AVSTEDATAFAERENTF-FMETSALESMNVENAF 167
            H R          V  E+    A R   F +ME SA     V   F
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 9/171 (5%)
Query: 15  KVVLIGDSGVGKSNLLSRFTR--NEFSLESKSTIGVEFATRSIRCDDKIVKAQIW--DTA 70
           KV ++G++ VGKS L+S FT   ++F  +   T GVE     +   D  V  +++  DTA
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERW---LKELRDHTDSNIVIMLVGNK 127
           G + Y+   S Y+ G   A+LV+DV+   +FE+ + W   LK  R   +  +  +LV NK
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141
Query: 128 ADLRHLR-AVSTEDATAFAERENTFFMETSA-LESMNVENAFTEVLTQIYR 176
            DL   R  V  + A  +A      F + SA     + +  F  + T  YR
Sbjct: 142 TDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYR 192

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL  F++++F      T+  E     I  D K V+  +WDTAGQE 
Sbjct: 7   KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRH 132
           Y       Y      L+ + +    + EN+ E+W  E++ H   N+ I+LVGNK DLR+
Sbjct: 66  YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRN 123

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 78/148 (52%), Gaps = 3/148 (2%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +F +  F  E   TI   +  +    D++     + DTAGQE + A+   Y R 
Sbjct: 31  KSALTIQFFQKIFVDEYDPTIEDSYR-KHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 86  AVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAF 144
             G L+VY VT   +FE+V+R+ +  LR     +  ++LV NK DL HLR V+ +     
Sbjct: 90  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 145 AERENTFFMETSALE-SMNVENAFTEVL 171
           A + N  ++ETSA +  +NV+  F +++
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDLV 177

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 16/173 (9%)
Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
           L K V++GD  VGK+ LL  +T N F  E   T+   ++  ++  D K V   +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGL 213
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR 131
           E Y  +    Y      L+ + +    +F +V  +W  E+R H   N  I+LVG K DLR
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLR 272
Query: 132 ------------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVL 171
                        L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL   ++++F      T+  E     I  D K V+  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 65
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + +    + EN+ E+W  E++ H   N+ I+LVGNK DLR  
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRQD 124
Query: 132 -HLR---------AVSTEDATAFAERENTF-FMETSALESMNVENAF 167
            H R          V +E+    A R + F ++E SA     V   F
Sbjct: 125 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 171

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 16/173 (9%)
Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
           L K V++GD  VGK+ LL  +T N F  E   T+   ++  ++  D K V   +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGL 213
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR 131
           E Y  +    Y      L+ + +    +F +V  +W  E+R H   N  I+LVG K DLR
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLR 272
Query: 132 ------------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVL 171
                        L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 3/148 (2%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +F +  F  +   TI   +  +    D++     + DTAGQE + A+   Y R 
Sbjct: 26  KSALTIQFFQKIFVPDYDPTIEDSYL-KHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 84
Query: 86  AVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAF 144
             G L+VY VT   +FE+V+R+ +  LR     +  ++LV NK DL HLR V+ +     
Sbjct: 85  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 144
Query: 145 AERENTFFMETSALE-SMNVENAFTEVL 171
           A + N  ++ETSA +  +NV+  F +++
Sbjct: 145 ATKYNIPYIETSAKDPPLNVDKTFHDLV 172

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 16/173 (9%)
Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
           L K V++GD  VGK+ LL  +T N F  E   T+   ++  ++  D K V   +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGL 213
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR 131
           E Y  +    Y      L+ + +    +F +V  +W  E+R H   N  I+LVG K DLR
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLR 272
Query: 132 ------------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVL 171
                        L  ++     A A+      ++E SAL    ++  F E +
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 3/148 (2%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +F +  F  +   TI   +  +    D++     + DTAGQE + A+   Y R 
Sbjct: 31  KSALTIQFFQKIFVDDYDPTIEDSYL-KHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 86  AVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAF 144
             G L+VY VT   +FE+V+R+ +  LR     +  ++LV NK DL HLR V+ +     
Sbjct: 90  GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 145 AERENTFFMETSALE-SMNVENAFTEVL 171
           A + N  ++ETSA +  +NV+  F +++
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDLV 177

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 73/147 (49%), Gaps = 2/147 (1%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +F ++ F  +   TI   + T+    D    +  I DTAGQE + A+   Y R 
Sbjct: 22  KSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 86  AVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAF 144
             G LLV+ +    +F  V +   + LR     +  ++LVGNKADL   R V   +A+AF
Sbjct: 81  GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF 140
Query: 145 AERENTFFMETSALESMNVENAFTEVL 171
               +  + E SA   +NV+ AF +++
Sbjct: 141 GASHHVAYFEASAKLRLNVDEAFEQLV 167

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 77/167 (46%), Gaps = 16/167 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL   ++++F      T+  E     I  D K V+  +WDTAG E 
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGLED 68
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + +    + EN+ E+W  E++ H   N+ I+LVGNK DLR  
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 127
Query: 132 -HLR---------AVSTEDATAFAERENTF-FMETSALESMNVENAF 167
            H R          V  E+    A R   F +ME SA     V   F
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 76/150 (50%), Gaps = 3/150 (2%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +  +N F  E   TI   +  + +  D +I    I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRT 74
Query: 86  AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
             G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL   R V +  A   
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
           A      ++ETSA     VE+AF  ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 16/176 (9%)
Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
           + K V++GD  VGK+ LL  +  + F  E   T+   +A  S+    K     ++DTAGQ
Sbjct: 18  MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV-SVTVGGKQYLLGLYDTAGQ 76
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR 131
           E Y  +    Y      L+ + V    +F+NV E W+ EL+++   N+  +L+G + DLR
Sbjct: 77  EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLR 135
Query: 132 ------------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVLTQI 174
                         + +  E     A E     ++E SAL    ++  F E +  I
Sbjct: 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 191

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 78/157 (49%), Gaps = 3/157 (1%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +  +N F  E   TI   +  + +  D +     I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 86  AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
             G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL   R V +  A   
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQIYRVVSRK 181
           A      ++ETSA     VE+AF  ++ +I +   RK
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRK 170

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 77/150 (51%), Gaps = 3/150 (2%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +  +N F  E   TI   +  + +  D +     I DTAGQE Y A+   Y R 
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 86  AVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIMLVGNKADLRHLRAVSTEDATAF 144
             G L V+ +    +FE++  + ++++   DS ++ ++LVGNK+DL   R V T+ A   
Sbjct: 76  GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS-RTVDTKQAQDL 134
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
           A      F+ETSA     V++AF  ++ +I
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 77/150 (51%), Gaps = 3/150 (2%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +  +N F  E   TI   +  + +  D +     I DTAGQE Y A+   Y R 
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 86  AVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIMLVGNKADLRHLRAVSTEDATAF 144
             G L V+ +    +FE++  + ++++   DS ++ ++LVGNK+DL   R V T+ A   
Sbjct: 76  GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS-RTVDTKQAQDL 134
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
           A      F+ETSA     V++AF  ++ +I
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++    +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVXIGGEPYTLGLFDTAGQED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR  
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
                       + ++ E A   A + +   ++E SAL    ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 81/159 (50%), Gaps = 6/159 (3%)
Query: 13  LFKVVLIGDSGVGKSNLLSRFT-RNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAG 71
           L++VVL+GD GVGK++L S F  + E  L  +  +G +   R++  D +     + DT  
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQ--LGEDVYERTLTVDGEDTTLVVVDTWE 61
Query: 72  QERYRAITS--AYYRGAVGALLVYDVTRHVTFENVERWLKELR-DHTDSNIVIMLVGNKA 128
            E+     S  +  +G    ++VY +    +FE+      +LR  H   ++ I+LVGNKA
Sbjct: 62  AEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKA 121
Query: 129 DLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAF 167
           DL   R VS E+  A A   +  F+ETSA    NV   F
Sbjct: 122 DLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +  +N F  E   TI   +  + +  D +     I DTAGQE Y A+   Y R 
Sbjct: 23  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 81
Query: 86  AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
             G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL   R V +  A   
Sbjct: 82  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 140
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
           A      ++ETSA     VE+AF  ++ +I
Sbjct: 141 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 170

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 76/150 (50%), Gaps = 3/150 (2%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +  +N F  E   TI   +  + +  D +     I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 86  AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
             G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK+DL   R V +  A   
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
           A      ++ETSA     VE+AF  ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++    +     ++DTAGQE 
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 67
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR  
Sbjct: 68  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 126
Query: 132 ----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
                       + ++ E A   A + +   ++E SAL    ++N F E +
Sbjct: 127 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 177

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++    +     ++DTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 63
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR- 131
            Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR 
Sbjct: 64  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 122
Query: 132 -----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
                        + ++ E A   A + +   ++E SAL    ++N F E +
Sbjct: 123 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 174

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++    +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR  
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 132 ----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
                       + ++ E A   A + +   ++E SAL    ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++    +     ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR- 131
            Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR 
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 132 -----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
                        + ++ E A   A + +   ++E SAL    ++N F E +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++    +     ++DTAGQE 
Sbjct: 15  KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 73
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR  
Sbjct: 74  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 132
Query: 132 ----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
                       + ++ E A   A + +   ++E SAL    ++N F E +
Sbjct: 133 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 183

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++    +     ++DTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR  
Sbjct: 66  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 124
Query: 132 ----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
                       + ++ E A   A + +   ++E SAL    ++N F E +
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 175

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++    +     ++DTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR  
Sbjct: 66  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 124
Query: 132 ----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
                       + ++ E A   A + +   ++E SAL    ++N F E +
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 175

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++    +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR  
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 132 ----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
                       + ++ E A   A + +   ++E SAL    ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++    +     ++DTAGQE
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 65
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR- 131
            Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR 
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 124
Query: 132 -----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
                        + ++ E A   A + +   ++E SAL    ++N F E +
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 176

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++    +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR  
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 132 ----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
                       + ++ E A   A + +   ++E SAL    ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAI 173

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++    +     ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR- 131
            Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR 
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121
Query: 132 -----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
                        + ++ E A   A + +   ++E SAL    ++N F E +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++    +     ++DTAGQE 
Sbjct: 8   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 66
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR  
Sbjct: 67  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 125
Query: 132 ----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
                       + ++ E A   A + +   ++E SAL    ++N F E +
Sbjct: 126 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 176

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++    +     ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR- 131
            Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR 
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 128
Query: 132 -----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
                        + ++ E A   A + +   ++E SAL    ++N F E +
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 180

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++    +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR  
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 132 ----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
                       + ++ E A   A + +   ++E SAL    ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +  +N F  E   TI   +  + +  D +     I DTAGQE Y A+   Y R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 86  AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
             G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL   R V +  A   
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 138
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
           A      ++ETSA     VE+AF  ++ +I
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +  +N F  E   TI   +  + +  D +     I DTAGQE Y A+   Y R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 86  AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
             G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL   R V +  A   
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 138
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
           A      ++ETSA     VE+AF  ++ +I
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 78/155 (50%), Gaps = 5/155 (3%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +  +N F  E   TI   +  + +  D +     I DTAGQE Y A+   Y R 
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 92
Query: 86  AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
             G L V+ +    +F ++  + ++++   DS+ V M LVGNK DL   R V T+ A   
Sbjct: 93  GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-PTRTVDTKQAHEL 151
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI--YRV 177
           A+     F+ETSA     VE+AF  ++ +I  YR+
Sbjct: 152 AKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRM 186

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++    +     ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR- 131
            Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR 
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 128
Query: 132 -----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
                        + ++ E A   A + +   ++E SAL    ++N F E +
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 180

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +  +N F  E   TI  E   + +  D +     I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIE-ESYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 86  AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
             G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL   R V +  A   
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
           A      ++ETSA     VE+AF  ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++    +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR  
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 132 ----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
                       + ++ E A   A + +   ++E SAL    ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAI 173

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++    +     ++DTAGQE
Sbjct: 4   IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR- 131
            Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR 
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121
Query: 132 -----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
                        + ++ E A   A + +   ++E SAL    ++N F E +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 78/157 (49%), Gaps = 3/157 (1%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +  +N F  E   TI   +  + +  D +     I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 86  AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
             G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL   R V +  A   
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQIYRVVSRK 181
           A      ++ETSA     VE+AF  ++ +I +   RK
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRK 170

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 78/157 (49%), Gaps = 3/157 (1%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +  +N F  E   TI   +  + +  D +     I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 86  AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
             G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL   R V +  A   
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQIYRVVSRK 181
           A      ++ETSA     VE+AF  ++ +I +   RK
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRK 170

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 17/171 (9%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKS-TIGVEFATRSIRCDDK---IVKAQIWDT 69
           ++VVLIG+ GVGKS L + F     S++S    +G +   R++  D +   I+   +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 70  AGQERY-----RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIML 123
            G+  +       +  AY       L+VY +T   +FE       +LR    + +I I+L
Sbjct: 67  KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 124 VGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           VGNK+DL   R VS  +  A A   +  F+ETSA    NV+  F  ++ Q+
Sbjct: 120 VGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +  +N F  E   TI   +  + +  D +     I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 86  AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
             G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL   R V +  A   
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
           A      ++ETSA     VE+AF  ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +  +N F  E   TI   +  + +  D +     I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 86  AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
             G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL   R V +  A   
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
           A      ++ETSA     VE+AF  ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +  +N F  E   TI   +  + +  D +     I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 86  AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
             G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL   R V +  A   
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
           A      ++ETSA     VE+AF  ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +  +N F  E   TI   +  + +  D +     I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEFDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 86  AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
             G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL   R V +  A   
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
           A      ++ETSA     VE+AF  ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +  +N F  E   +I   +  + +  D +     I DTAGQE Y A+   Y R 
Sbjct: 22  KSALTIQLIQNHFVDEYDPSIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 80
Query: 86  AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
             G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL   R V +  A   
Sbjct: 81  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 139
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
           A      ++ETSA     VE+AF  ++ +I
Sbjct: 140 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 169

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 17/171 (9%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKS-TIGVEFATRSIRCDDK---IVKAQIWDT 69
           ++VVLIG+ GVGKS L + F     S++S    +G +   R++  D +   I+   +W+ 
Sbjct: 38  YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 97
Query: 70  AGQERY-----RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIML 123
            G+  +       +  AY       L+VY +T   +FE       +LR    + +I I+L
Sbjct: 98  KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 150
Query: 124 VGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           VGNK+DL   R VS  +  A A   +  F+ETSA    NV+  F  ++ Q+
Sbjct: 151 VGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 84/170 (49%), Gaps = 16/170 (9%)
Query: 7   DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQI 66
           D + +   K+V++GDS  GK+ LL  F ++ F      T+  E  T S   D + ++  +
Sbjct: 22  DPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSL 80
Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVG 125
           WDT+G   Y  +    Y  +   L+ +D++R  T ++V ++W  E+++    N  ++LVG
Sbjct: 81  WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVG 139
Query: 126 NKADLR-----------HLRAVSTEDATAFAERE--NTFFMETSALESMN 162
            K+DLR           H +   + D  A   ++     ++E SAL+S N
Sbjct: 140 CKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 189

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 81/162 (50%), Gaps = 16/162 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+V++GDS  GK+ LL  F ++ F      T+  E  T S   D + ++  +WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 67
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y  +   L+ +D++R  T ++V ++W  E+++    N  ++LVG K+DLR  
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTD 126
Query: 132 ---------HLRAVSTEDATAFAERE--NTFFMETSALESMN 162
                    H +   + D  A   ++     ++E SAL+S N
Sbjct: 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 168

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +  +N F  E   TI   +  + +  D +     I DTAG E Y A+   Y R 
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 92
Query: 86  AVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIMLVGNKADLRHLRAVSTEDATAF 144
             G L V+ +    +FE++  + ++++   DS ++ ++LVGNK DL   R V T+ A   
Sbjct: 93  GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDL 151
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
           A      F+ETSA     V++AF  ++ +I
Sbjct: 152 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 181

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 84/170 (49%), Gaps = 16/170 (9%)
Query: 7   DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQI 66
           D + +   K+V++GDS  GK+ LL  F ++ F      T+  E  T S   D + ++  +
Sbjct: 17  DPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSL 75
Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVG 125
           WDT+G   Y  +    Y  +   L+ +D++R  T ++V ++W  E+++    N  ++LVG
Sbjct: 76  WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVG 134
Query: 126 NKADLR-----------HLRAVSTEDATAFAERE--NTFFMETSALESMN 162
            K+DLR           H +   + D  A   ++     ++E SAL+S N
Sbjct: 135 CKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 184

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 17/171 (9%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRCDDK---IVKAQIWDT 69
           ++VVLIG+ GVGKS L + F     S++S    +G +   R++  D +   I+   +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 70  AGQERY-----RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIML 123
            G+  +       +  AY       L+VY +T   +FE       +LR    + +I I+L
Sbjct: 67  KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 124 VGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           VGNK+DL   R VS  +  A A   +  F+ETSA    NV+  F  ++ Q+
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 7/166 (4%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRCDDK---IVKAQIWDT 69
           ++VVLIG+ GVGKS L + F     S++S    +G +   R++  D +   I+   +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIMLVGNKA 128
            G+  +  +     +     L+VY +T   +FE       +LR    + +I I+LVGNK+
Sbjct: 67  KGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124
Query: 129 DLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           DL   R VS  +  A A   +  F+ETSA    NV+  F  ++ Q+
Sbjct: 125 DLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 16/172 (9%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++    +     + DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLRDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR- 131
            Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR 
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121
Query: 132 -----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
                        + ++ E A   A + +   ++E SAL    ++N F E +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +  +N F  E   TI   +  + +  D +     I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 86  AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
             G L V+ +    +FE++ ++ ++++   DS+ V M LVGN+ DL   R V +  A   
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
           A      ++ETSA     VE+AF  ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 71/143 (49%), Gaps = 3/143 (2%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +  +N F  E   TI   +  + +  D +     I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 86  AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
             G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL   R V +  A   
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAF 167
           A      ++ETSA     VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +  +N F  E   +I   +  + +  D +     I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPSIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 86  AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
             G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL   R V +  A   
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
           A      ++ETSA     VE+AF  ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 3/150 (2%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +  +N F  E   TI   +  + +  D +     I DT GQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 86  AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
             G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL   R V +  A   
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
           A      ++ETSA     VE+AF  ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E    +   +A  ++    +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR  
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 132 ----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
                       + ++ E A   A + +   ++E SAL    ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           K+ L  +  +N F  E   TI   +  + +  D +     I DTAGQE Y A+   Y R 
Sbjct: 16  KNALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 86  AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
             G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL   R V +  A   
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
           A      ++ETSA     VE+AF  ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +  +N F  +   TI   +  + +  D +     I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVEKYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 86  AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
             G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL   R V +  A   
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
           A      ++ETSA     VE+AF  ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +  +N F  +   TI   +  + +  D +     I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 86  AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
             G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL   R V +  A   
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
           A      ++ETSA     VE+AF  ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 16/172 (9%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N+   E   T+   +A  ++    +     ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR- 131
            Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR 
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121
Query: 132 -----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
                        + ++ E A   A + +   ++E SAL    ++N F E +
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 3/150 (2%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +  +N F  E   TI   +  + +  D +     I DT GQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTTGQEEYSAMRDQYMRT 74
Query: 86  AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
             G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL   R V +  A   
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
           A      ++ETSA     VE+AF  ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +  +N F  E   TI   +  + +  D +     I DTAG+E Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRT 74
Query: 86  AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
             G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL   R V +  A   
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
           A      ++ETSA     VE+AF  ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 3/150 (2%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +  +N F  E   TI   +  + +  D +     I DTAG E Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 74
Query: 86  AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
             G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL   R V +  A   
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
           A      ++ETSA     VE+AF  ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 16/171 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++    +     ++DTAG E 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLED 63
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR  
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 132 ----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
                       + ++ E A   A + +   ++E SAL    ++N F E +
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 16/172 (9%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++    +     ++DTAG E
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLE 66
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR- 131
            Y  +    Y      L+ + V    +FENV E+W+ E+  H       +LVG + DLR 
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 125
Query: 132 -----------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVL 171
                        + ++ E A   A + +   ++E SAL    ++N F E +
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 177

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 3/150 (2%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +  +N F  E   TI   +  + +  D +     I DTAG E Y A+   Y R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 79
Query: 86  AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
             G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL   R V +  A   
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 138
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
           A      ++ETSA     VE+AF  ++ +I
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 3/150 (2%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +  +N F  E   TI   +  + +  D +     I DTAG E Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 86  AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
             G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL   R V +  A   
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
           A      ++ETSA     VE+AF  ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 3/150 (2%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +  +N F  E   TI   +  + +  D +     I DTA QE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 86  AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
             G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL   R V +  A   
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
           A      ++ETSA     VE+AF  ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 3/150 (2%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +  +N F  E   TI   +  + +  D +     I DTA QE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 86  AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
             G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL   R V +  A   
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
           A      ++ETSA     VE+AF  ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 3/150 (2%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +  +N F  E   TI   +  + +  D +     I DTAG E Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 74
Query: 86  AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
             G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL   R V +  A   
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
           A      ++ETSA     VE+AF  ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 3/150 (2%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +  +N F  E   TI   +  + +  D +     I DTAG E Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRT 74
Query: 86  AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
             G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL   R V +  A   
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
           A      ++ETSA     VE+AF  ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 6/150 (4%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS+L+ RF +  F      TI   +  + I CD  +   QI DT G  ++ A+       
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 86  AVGALLVYDVTRHVTFEN---VERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAT 142
               +LV+ VT   + E    + + + +++   + +I +MLVGNK D    R V T +A 
Sbjct: 80  GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVE-DIPVMLVGNKCDETQ-REVDTREAQ 137
Query: 143 AFAERENTFFMETSALESMNVENAFTEVLT 172
           A A+     FMETSA  + NV+  F E+LT
Sbjct: 138 AVAQEWKCAFMETSAKMNYNVKELFQELLT 167

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 3/150 (2%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +  +N F  E   TI   +  + +  D +     I DTAG E Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 86  AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
             G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL   R V +  A   
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
           A      ++ETSA     VE+AF  ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 3/150 (2%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +  +N F  E   TI   +  + +  D +     I DTAG E Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 86  AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
             G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL   R V +  A   
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
           A      ++ETSA     VE+AF  ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 3/150 (2%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +  +N F  E   TI   +  + +  D +     I DTAGQE   A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEASAMRDQYMRT 74
Query: 86  AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTEDATAF 144
             G L V+ +    +FE++ ++ ++++   DS+ V M LVGNK DL   R V +  A   
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 145 AERENTFFMETSALESMNVENAFTEVLTQI 174
           A      ++ETSA     VE+AF  ++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 74/154 (48%), Gaps = 10/154 (6%)
Query: 26  KSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG 85
           KS L  +F    F  +   TI  +F  + I  D      +I DTAG E++ ++   Y + 
Sbjct: 16  KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 86  AVGALLVYDVTRHVTFENVERWLKELRDHTD-----SNIVIMLVGNKADLRHLRAVSTED 140
             G +LVY +    +F+++    K +RD          + ++LVGNK DL   R VS+ +
Sbjct: 75  GQGFILVYSLVNQQSFQDI----KPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSE 130
Query: 141 ATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
             A AE     FMETSA     V+  F E++ Q+
Sbjct: 131 GRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 82/164 (50%), Gaps = 5/164 (3%)
Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
           ++KV+L+G  GVGKS L   F   E   E+++  G  +  RSI  D +     ++D   Q
Sbjct: 7   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTY-DRSIVVDGEEASLMVYDIWEQ 64
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRD--HTDSNIVIMLVGNKADL 130
           +  R +           ++VY VT   +FE       +LR    TD ++ I+LVGNK+DL
Sbjct: 65  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTD-DVPIILVGNKSDL 123
Query: 131 RHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              R VS ++  A A   +  F+ETSA    NV+  F  V+ QI
Sbjct: 124 VRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 82/164 (50%), Gaps = 5/164 (3%)
Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
           ++KV+L+G  GVGKS L   F   E   E+++  G  +  RSI  D +     ++D   Q
Sbjct: 7   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTY-DRSIVVDGEEASLMVYDIWEQ 64
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRD--HTDSNIVIMLVGNKADL 130
           +  R +           ++VY VT   +FE       +LR    TD ++ I+LVGNK+DL
Sbjct: 65  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTD-DVPIILVGNKSDL 123
Query: 131 RHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              R VS ++  A A   +  F+ETSA    NV+  F  V+ QI
Sbjct: 124 VRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 82/164 (50%), Gaps = 5/164 (3%)
Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
           ++KV+L+G  GVGKS L   F   E   E+++  G  +  RSI  D +     ++D   Q
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTY-DRSIVVDGEEASLMVYDIWEQ 59
Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRD--HTDSNIVIMLVGNKADL 130
           +  R +           ++VY VT   +FE       +LR    TD ++ I+LVGNK+DL
Sbjct: 60  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTD-DVPIILVGNKSDL 118
Query: 131 RHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              R VS ++  A A   +  F+ETSA    NV+  F  V+ QI
Sbjct: 119 VRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K+V++GD  VGK+ LL  F++ E       T+   F +  ++  ++     +WDTAGQE
Sbjct: 24  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQE 82
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR 131
            Y  +    Y  +   LL + V    +F+N+  +W  E++ + D+   + LVG K DLR
Sbjct: 83  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV-LVGLKVDLR 140

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K+V++GD  VGK+ LL  F++ E       T+   F +  ++  ++     +WDTAGQE
Sbjct: 23  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQE 81
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLR 131
            Y  +    Y  +   LL + V    +F+N+  +W  E++ + D+   + LVG K DLR
Sbjct: 82  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV-LVGLKVDLR 139

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 92/198 (46%), Gaps = 26/198 (13%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+VL+GD   GK+ +L    ++ +      T+  E  T  +  +++ V+  +WDT+G   
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 87
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFEN-VERWLKELRDHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y  +   LL +D++R  T ++ +++W  E+ D+  S  V +L+G K DLR  
Sbjct: 88  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV-LLIGCKTDLRTD 146
Query: 132 --------HLR--AVSTEDATAFAERENT-FFMETSALESMNVENAFTEVLTQIYRVVSR 180
                   H +   +S E   A A++     ++E SA  S        + +  I+R  S 
Sbjct: 147 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS-------EKSIHSIFRTASM 199
Query: 181 KALEIGDDPAALPKGQTI 198
             L   + P+ LP+   +
Sbjct: 200 LCL---NKPSPLPQKSPV 214

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 92/198 (46%), Gaps = 26/198 (13%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+VL+GD   GK+ +L    ++ +  E+      E  T  +  +++ V+  +WDT+G   
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 71
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFEN-VERWLKELRDHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y  +   LL +D++R  T ++ +++W  E+ D+  S  V +L+G K DLR  
Sbjct: 72  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV-LLIGCKTDLRTD 130
Query: 132 --------HLR--AVSTEDATAFAERENT-FFMETSALESMNVENAFTEVLTQIYRVVSR 180
                   H +   +S E   A A++     ++E SA  S        + +  I+R  S 
Sbjct: 131 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS-------EKSIHSIFRTASM 183
Query: 181 KALEIGDDPAALPKGQTI 198
             L   + P+ LP+   +
Sbjct: 184 LCL---NKPSPLPQKSPV 198

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 92/198 (46%), Gaps = 26/198 (13%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+VL+GD   GK+ +L    ++ +  E+      E  T  +  +++ V+  +WDT+G   
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 70
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFEN-VERWLKELRDHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y  +   LL +D++R  T ++ +++W  E+ D+  S  V +L+G K DLR  
Sbjct: 71  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV-LLIGCKTDLRTD 129
Query: 132 --------HLR--AVSTEDATAFAERENT-FFMETSALESMNVENAFTEVLTQIYRVVSR 180
                   H +   +S E   A A++     ++E SA  S        + +  I+R  S 
Sbjct: 130 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS-------EKSIHSIFRTASM 182
Query: 181 KALEIGDDPAALPKGQTI 198
             L   + P+ LP+   +
Sbjct: 183 LCL---NKPSPLPQKSPV 197

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL   ++ +F      T+  E     +  D + V+  +WDTAGQE 
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTV-FENYVADVEVDGRRVELALWDTAGQED 70
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR-- 131
           Y  +    Y  +   L+ + +    + ENV E+W+ E+  H    + I+LVG K DLR  
Sbjct: 71  YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVL-HFCQGVPIILVGCKVDLRND 129
Query: 132 -----HLR-----AVSTEDATAFAEREN-TFFMETSALESMNVENAF 167
                 LR      V++++  + A++   T + E SA     V   F
Sbjct: 130 PQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVF 176

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 75/171 (43%), Gaps = 12/171 (7%)
Query: 11  DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK---IVKAQIW 67
           D +FKV+L+G+SGVGKS L   F   +     +     +   R I  D +   +V   IW
Sbjct: 21  DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIW 80
Query: 68  ---DTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR-DHTDSNIVIML 123
              D  G  R   + +         L+V+ VT   +F  V   L  LR      ++ ++L
Sbjct: 81  EQGDAGGWLRDHCLQTGD-----AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVIL 135
Query: 124 VGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           VGNK+DL   R VS E+    A   +   +ETSA    N    F   + QI
Sbjct: 136 VGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 78/177 (44%), Gaps = 24/177 (13%)
Query: 11  DYLFKVVLIGDSGVGKSNLLSRFTR----NEFSLESKSTIGVEFATRSIRCDDK---IVK 63
           D +FKV+L+G+SGVGKS L   F      N   +E+      +   R I  D +   ++ 
Sbjct: 10  DGVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSE----DTYERRIMVDKEEVTLIV 65
Query: 64  AQIW---DTAG--QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR-DHTDS 117
             IW   D  G  Q+       A+       L+V+ VT   +F  V   L  LR      
Sbjct: 66  YDIWEQGDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKVPETLLRLRAGRPHH 118
Query: 118 NIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           ++ ++LVGNK+DL   R VS E+    A   +   +ETSA    N    F   + QI
Sbjct: 119 DLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 175

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 75/171 (43%), Gaps = 16/171 (9%)
Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK---IVKAQIW-- 67
           +FKV+L+G+SGVGKS L   F   +     +     +   R I  D +   ++   IW  
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 68  -DTAG--QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR-DHTDSNIVIML 123
            D  G  Q+       A+       L+V+ VT   +F  V   L  LR      ++ ++L
Sbjct: 62  GDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVIL 114
Query: 124 VGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           VGNK+DL   R VS E+    A   +   +ETSA    N    F   + QI
Sbjct: 115 VGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 6/165 (3%)
Query: 16  VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY 75
           + ++G  G GKS L  +F    F  E    +   +++     D + V  ++ DTA  +  
Sbjct: 24  LAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEET-VDHQPVHLRVMDTADLDTP 82
Query: 76  RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDH---TDSNIVIMLVGNKADLRH 132
           R     Y   A   L+VY V    +F++   +L+ L  H   T  +I  +L+GNK D+  
Sbjct: 83  RN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141
Query: 133 LRAVSTEDATAFAERENTFFMETSA-LESMNVENAFTEVLTQIYR 176
            R V+  +  A A R    F E SA L+  +V++ F E + +  R
Sbjct: 142 YRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARR 186

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 14/168 (8%)
Query: 1   MGAYRADDDYDYLF-----KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSI 55
           MG Y A   +  LF     +++++G  G GK+ +L +    E  + +  TIG    T   
Sbjct: 1   MGLY-ASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVET--- 55
Query: 56  RCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRDH 114
               K +   +WD  GQ+R R++   YYR   G + V D   R    E  E   + L + 
Sbjct: 56  -VQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNED 114
Query: 115 TDSNIVIMLVGNKADLRHLRAVS--TEDATAFAERENTFFMETSALES 160
              N V ++  NK DL    + +  TE     + R   +F++++   S
Sbjct: 115 ELRNAVWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQSTCATS 162

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 9/140 (6%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            ++ L+G    GK+  ++     +FS +   T+G  F  R +   +  +K  IWD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGNVTIK--IWDIGGQP 78
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRH 132
           R+R++   Y RG    + + D       E     L  L D      I ++++GNK DL +
Sbjct: 79  RFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPN 138
Query: 133 L----RAVSTEDATAFAERE 148
                + +   + +A  +RE
Sbjct: 139 ALDEKQLIEKMNLSAIQDRE 158

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 15/147 (10%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            ++ L+G    GK+  ++     +F+ +   T+G  F  R I   +  +K  +WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQP 78
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRH 132
           R+R++   Y RG    + + D       E  +  L  L D      I ++++GNK DL  
Sbjct: 79  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL-- 136
Query: 133 LRAVSTEDATAFAERENTFFMETSALE 159
                     A  E+E    M  SA++
Sbjct: 137 --------PGALDEKELIEKMNLSAIQ 155

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            +++++G    GK+ +L +    + S+ +  T+G    T +     K VK  +WD  GQ+
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDVGGQD 377
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADL 130
           + R +   YY G  G + V D       +   + L   + D    + +I++  NK DL
Sbjct: 378 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 435

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 5/118 (4%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            ++ L+G    GK+  ++     +F+ +   T+G  F  R I   +  +K  +WD  GQ 
Sbjct: 32  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQP 87
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADL 130
           R+R++   Y RG    + + D       E  +  L  L D      I ++++GNK DL
Sbjct: 88  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL 145

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            +++++G    GK+ +L +    + S+ +  T+G    T +     K VK  +WD  GQ+
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDVGGQD 55
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADL 130
           + R +   YY G  G + V D       +   + L   + D    + +I++  NK DL
Sbjct: 56  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 113

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            +++++G    GK+ +L +    + S+ +  T+G    T +     K VK  +WD  GQ+
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDVGGQD 55
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADL 130
           + R +   YY G  G + V D       +   + L   + D    + +I++  NK DL
Sbjct: 56  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 113

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            +++++G    GK+ +L +    + S+ +  T+G    T +     K VK  +WD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDVGGQD 67
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADL 130
           + R +   YY G  G + V D       +   + L   + D    + +I++  NK DL
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 125

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            +++++G    GK+ +L +    + S+ +  T+G    T +     K VK  +WD  GQ+
Sbjct: 14  MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDVGGQD 68
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADL 130
           + R +   YY G  G + V D       +   + L   + D    + +I++  NK DL
Sbjct: 69  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 126

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 8/147 (5%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            +++++G    GK+++L +    E  + +  TIG    T     + K +   +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTSILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
Query: 74  RYRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH 132
           + R +   YY+     + V D   R    E  E  +K L +    N ++++  NK DL  
Sbjct: 73  KIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDLPQ 132
Query: 133 LRAVS--TEDATAFAERENTFFMETSA 157
             ++S  TE       +   ++ +TS 
Sbjct: 133 AMSISEVTEKLGLQTIKNRKWYCQTSC 159

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 18/152 (11%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            +++++G    GK+ +L +    E  + +  TIG    T     + K +   +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNICFTVWDVGGQD 72
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLK------ELRDHTDSNIVIMLVGNK 127
           R R +   Y++   G + V D       + V   L+      ELRD      V++L  NK
Sbjct: 73  RIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDA-----VLLLFANK 127
Query: 128 ADLRHLRAVS--TEDATAFAERENTFFMETSA 157
            DL +  A+S  T+     + R  T++++ + 
Sbjct: 128 QDLPNAMAISEMTDKLGLQSLRNRTWYVQATC 159

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 8/150 (5%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            +++++G  G GK+ +L +    E  + +  TIG    T       K +   +WD  GQ+
Sbjct: 1   MRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVET----VQYKNISFTVWDVGGQD 55
Query: 74  RYRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH 132
           R R++   YYR   G + V D   R    E  E   + L +    N   ++  NK DL  
Sbjct: 56  RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPE 115
Query: 133 LRAVS--TEDATAFAERENTFFMETSALES 160
             + +  TE     + R   +F++ +   S
Sbjct: 116 AMSAAEITEKLGLHSIRNRPWFIQATCATS 145

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 8/150 (5%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            +++++G  G GK+ +L +    E  + +  TIG    T       K +   +WD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVET----VQYKNISFTVWDVGGQD 72
Query: 74  RYRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH 132
           R R++   YYR   G + V D   R    E  E   + L +    N   ++  NK DL  
Sbjct: 73  RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPE 132
Query: 133 LRAVS--TEDATAFAERENTFFMETSALES 160
             + +  TE     + R   +F++ +   S
Sbjct: 133 AMSAAEITEKLGLHSIRNRPWFIQATCATS 162

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           +++ +G    GK+ +L +    + S+ +  T+G    T +     K VK  +WD  GQ++
Sbjct: 2   RILXLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDVGGQDK 56
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADL 130
            R +   YY G  G + V D       +   + L   + D    + +I++  NK DL
Sbjct: 57  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDL 113

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 7/122 (5%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFS-LESKS-TIGVEFATRSIRCDDKIVK---AQIWDT 69
           K+ ++G++G GK+ LL +  + + S L  +S T+G++     I+  DK  +     +WD 
Sbjct: 2   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTR-HVTFENVERWLKELRDHTDSNIVIMLVGNKA 128
           AG+E + +    +       L VYD+++     +  + WL  ++    S+ VI LVG   
Sbjct: 62  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI-LVGTHL 120
Query: 129 DL 130
           D+
Sbjct: 121 DV 122

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 7/122 (5%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFS-LESKS-TIGVEFATRSIRCDDKIVK---AQIWDT 69
           K+ ++G++G GK+ LL +  + + S L  +S T+G++     I+  DK  +     +WD 
Sbjct: 4   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTR-HVTFENVERWLKELRDHTDSNIVIMLVGNKA 128
           AG+E + +    +       L VYD+++     +  + WL  ++    S+ VI LVG   
Sbjct: 64  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI-LVGTHL 122
Query: 129 DL 130
           D+
Sbjct: 123 DV 124

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            +++++G    GK+ +L +    + S+ +  T+G    T +     K VK  +WD  G +
Sbjct: 3   MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDVGGLD 57
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADL 130
           + R +   YY G  G + V D       +   + L   + D    + +I++  NK DL
Sbjct: 58  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 115

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            +++++G    GK+ +L +    + S+ +  T+G    T +     K VK  +WD  G +
Sbjct: 4   MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDVGGLD 58
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADL 130
           + R +   YY G  G + V D       +   + L   + D    + +I++  NK DL
Sbjct: 59  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 116

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 58/125 (46%), Gaps = 6/125 (4%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            +++++G    GK+ +L +    E  + +  TIG    T     + K +   +WD  GQ+
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNICFTVWDVGGQD 84
Query: 74  RYRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH 132
           + R +   Y++   G + V D   R    E+ +   K L++    + V+++  NK D+ +
Sbjct: 85  KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN 144
Query: 133 LRAVS 137
              VS
Sbjct: 145 AMPVS 149

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            +++++G    GK+ +L +    + S+ +  T+G    T +     K VK  +WD  G +
Sbjct: 14  MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDVGGLD 68
Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADL 130
           + R +   YY G  G + V D       +   + L   + D    + +I++  NK DL
Sbjct: 69  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 126

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 66/151 (43%), Gaps = 10/151 (6%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIR-CDDKIVKAQIWDTAGQ 72
            +++++G  G GK+ +L +    E  + +  TIG  F    ++ C+   +   +WD  GQ
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIG--FNVECVQYCN---ISFTVWDVGGQ 71
Query: 73  ERYRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR 131
           +R R++   YY    G + V D   R    E  E   + L +    N   ++  NK DL 
Sbjct: 72  DRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFANKQDLP 131
Query: 132 HLRAVS--TEDATAFAERENTFFMETSALES 160
              + +  TE     + R   +F++ +   S
Sbjct: 132 EAMSAAEITEKLGLHSIRNRPWFIQATCATS 162

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            +++++G    GK+ +L +    E  + +  TIG    T     + K +   +WD  GQ+
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 55
Query: 74  RYRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRDHTDSNIVIMLVGNKADL 130
           + R +   Y++   G + V D   R    E  E  ++ L +    + V+++  NK DL
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 113

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            +++++G    GK+ +L +    E  + +  TIG    T     + K +   +WD  GQ+
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 220
Query: 74  RYRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRDHTDSNIVIMLVGNKADL 130
           + R +   Y++   G + V D   R    E  E  ++ L +    + V+++  NK DL
Sbjct: 221 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 278

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            +++++G    GK+ +L +    E  + +  TIG    T     + K +   +WD  GQ+
Sbjct: 17  MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 71
Query: 74  RYRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRDHTDSNIVIMLVGNKADL 130
           + R +   Y++   G + V D   R    E  E  ++ L +    + V+++  NK DL
Sbjct: 72  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 129

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            +++++G    GK+ +L +    E  + +  TIG    T     + K +   +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
Query: 74  RYRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRDHTDSNIVIMLVGNKADL 130
           + R +   Y++   G + V D   R    E  E  ++ L +    + V+++  NK DL
Sbjct: 73  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 130

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           +++++G  G GK+ +L R    E  + +K TIG    T S     K +K  +WD  GQ 
Sbjct: 19 LRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETLSY----KNLKLNVWDLGGQT 73
Query: 74 RYRAITSAYYRGAVGALLVYDVT 96
            R     YY      + V D T
Sbjct: 74 SIRPYWRCYYADTAAVIFVVDST 96

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/146 (21%), Positives = 64/146 (43%), Gaps = 8/146 (5%)
Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           +++++G    GK+ +L +    E  + +  TIG    T   R     +   +WD  GQ++
Sbjct: 19  RILMVGLDAAGKTTILYKVKLGEV-VTTIPTIGFNVETVEFRN----ISFTVWDVGGQDK 73
Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHL 133
            R +   YY    G + V D       ++    L  + +  +  + +I++  NK DL + 
Sbjct: 74  IRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPNA 133
Query: 134 RAVS--TEDATAFAERENTFFMETSA 157
            + +  TE       RE  +F++++ 
Sbjct: 134 MSAAEVTEKLHLNTIRERNWFIQSTC 159

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	217
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	1e-124
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	1e-119
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	1e-118
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	1e-118
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	1e-117
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	1e-117
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	1e-116
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	1e-116
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	1e-116
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	1e-115
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	1e-115
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-114
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	1e-114
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	1e-112
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	1e-112
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	1e-112
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	1e-111
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	1e-111
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	1e-111
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	1e-111
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	1e-111
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	1e-110
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	1e-110
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	1e-110
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	1e-110
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	1e-110
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	1e-109
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-109
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	1e-109
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	1e-109
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	1e-108
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	1e-108
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	1e-108
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	1e-108
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	1e-107
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-107
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	1e-106
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	1e-105
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	1e-105
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	1e-104
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	1e-102
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	2e-99
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	3e-92
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	9e-89
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	4e-84
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	7e-84
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	5e-81
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	2e-80
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	5e-80
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	1e-79
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	1e-78
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	1e-76
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	6e-76
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	2e-75
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	2e-75
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	4e-74
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	9e-71
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	1e-69
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	9e-69
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	2e-68
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	3e-68
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	1e-66
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	2e-66
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	2e-65
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	2e-65
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	3e-65
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	3e-65
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	3e-61
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	2e-58
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	3e-57
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	6e-49
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	2e-44
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	1e-43
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	2e-43
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	1e-42
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	4e-42
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	4e-41
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	1e-40
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	2e-39
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	3e-39
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	1e-38
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	3e-37
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	4e-37
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	6e-32
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	2e-24
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	4e-21
3llu_A	196	RAS-related GTP-binding protein C; structural geno	2e-14
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	5e-12
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	8e-11
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	9e-11
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	1e-10
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	1e-10
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	2e-10
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	4e-10
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	5e-10
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	1e-09
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	1e-09
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	5e-09
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	1e-08
2fh5_B	214	SR-beta, signal recognition particle receptor beta	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	2e-07
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	5e-07
2ged_A	193	SR-beta, signal recognition particle receptor beta	6e-07
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	7e-07
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	7e-07
1nrj_B	218	SR-beta, signal recognition particle receptor beta	1e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-06
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	4e-05
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	1e-04

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  349 bits (897), Expect = e-124
 Identities = 122/223 (54%), Positives = 160/223 (71%), Gaps = 8/223 (3%)

Query: 1   MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK 60
           M +     DYD LFK+VLIGDSGVGKSNLLSRFT+NEF+++SKSTIGVEFATR++  + K
Sbjct: 1   MSSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGK 60

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV 120
            +KAQIWDTAGQERYRAITSAYYRGAVGAL+VYD+++  ++EN   WL ELR++ D N+ 
Sbjct: 61  RIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVA 120

Query: 121 IMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSR 180
           + L+GNK+DL HLRAV TE++  FA+     F ETSAL S NV+ AF E++  IY+ VS+
Sbjct: 121 VGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSK 180

Query: 181 KALEIGDD-------PAALPKGQTINV-GTKDDVSAVKKVGCC 215
             +++GD         A+ P G TI++  T ++        CC
Sbjct: 181 HQMDLGDSSANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  335 bits (862), Expect = e-119
 Identities = 141/194 (72%), Positives = 162/194 (83%)

Query: 10  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDT 69
           YDYLFKVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRSI+ D K +KAQIWDT
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKAD 129
           AGQERYR ITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH DSNIVIMLVGNK+D
Sbjct: 62  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 121

Query: 130 LRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDP 189
           LRHLRAV T++A AFAE+ N  F+ETSAL+S NVE AF  +LT+IYR+VS+K +      
Sbjct: 122 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAH 181

Query: 190 AALPKGQTINVGTK 203
              P    +++   
Sbjct: 182 DESPGNNVVDISVP 195

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  332 bits (853), Expect = e-118
 Identities = 89/176 (50%), Positives = 119/176 (67%)

Query: 1   MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK 60
           +G+  A  +Y Y+FK ++IGD GVGKS LL +FT  +F  +   TIGVEF TR I    +
Sbjct: 3   LGSATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQ 62

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV 120
            +K QIWDTAGQER+RA+T +YYRGA GAL+VYD+TR  T+ ++  WL + R+ T+ N V
Sbjct: 63  KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV 122

Query: 121 IMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
           I+L+GNKADL   R V+ E+A  FAE     F+E SA    NVE+AF E   +IY+
Sbjct: 123 IILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  333 bits (855), Expect = e-118
 Identities = 93/209 (44%), Positives = 131/209 (62%), Gaps = 4/209 (1%)

Query: 7   DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQI 66
           + +YDYLFK++LIG+SGVGKS LL RF+ + ++ +  STIGV+F  +++  D K VK QI
Sbjct: 2   NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI 61

Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGN 126
           WDTAGQER+R ITS+YYRG+ G ++VYDVT   +F  V+ WL+E+  +  S ++ +LVGN
Sbjct: 62  WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121

Query: 127 KADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIG 186
           K DL+  R V  + A  FA+     F+ETSAL+S NVE+AF  +  QI   +S++ L   
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNL--- 178

Query: 187 DDPAALPKGQTINVGTKDDVSAVKKVGCC 215
            +     K    NV  K          CC
Sbjct: 179 -NETTQKKEDKGNVNLKGQSLTNTGGCCC 206

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  331 bits (850), Expect = e-117
 Identities = 83/180 (46%), Positives = 111/180 (61%)

Query: 5   RADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKA 64
           R     D+LFK ++IG +G GKS LL +F  N+F  +S  TIGVEF +R +    K VK 
Sbjct: 17  RGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKL 76

Query: 65  QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLV 124
           QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+ ++  WL + R     NIV++L 
Sbjct: 77  QIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILC 136

Query: 125 GNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALE 184
           GNK DL   R V+  +A+ FA+     F+ETSAL   NVE AF +    I   +    L+
Sbjct: 137 GNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELD 196

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  330 bits (849), Expect = e-117
 Identities = 115/177 (64%), Positives = 142/177 (80%)

Query: 5   RADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKA 64
           R  +DY+++FKVVLIG+SGVGK+NLLSRFTRNEFS +S++TIGVEF+TR++      VKA
Sbjct: 17  RGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKA 76

Query: 65  QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLV 124
           QIWDTAG ERYRAITSAYYRGAVGALLV+D+T+H T+  VERWLKEL DH ++ IV+MLV
Sbjct: 77  QIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLV 136

Query: 125 GNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRK 181
           GNK+DL   R V TE+A  FAE     F+ETSAL+S NVE AF  VL +I+  VS++
Sbjct: 137 GNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  329 bits (845), Expect = e-116
 Identities = 83/178 (46%), Positives = 112/178 (62%)

Query: 7   DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQI 66
            + YD+LFK ++IG++G GKS LL +F   +F  +S  TIGVEF ++ I    K VK QI
Sbjct: 4   SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQI 63

Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGN 126
           WDTAGQER+R++T +YYRGA GALLVYD+T   T+  +  WL + R     NIVI+L GN
Sbjct: 64  WDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGN 123

Query: 127 KADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALE 184
           K DL   R V+  +A+ FA+     F+ETSAL   NVE AF +   +I   +    L+
Sbjct: 124 KKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELD 181

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  329 bits (845), Expect = e-116
 Identities = 137/171 (80%), Positives = 153/171 (89%)

Query: 5   RADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKA 64
             DD+YDYLFKVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRSI+ D K +KA
Sbjct: 21  TRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKA 80

Query: 65  QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLV 124
           QIWDTAG ERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH DSNIVIMLV
Sbjct: 81  QIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLV 140

Query: 125 GNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
           GNK+DLRHLRAV T++A AFAE+    F+ETSAL+S NVE AF  +LT+IY
Sbjct: 141 GNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  328 bits (843), Expect = e-116
 Identities = 70/195 (35%), Positives = 114/195 (58%)

Query: 6   ADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQ 65
               +DY+FK+++IG+S VGK++ L R+  + F+    ST+G++F  ++I  +DK +K Q
Sbjct: 1   GSHMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQ 60

Query: 66  IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVG 125
           IWDTAG ERYR IT+AYYRGA+G +L+YD+T   +F  V+ W  +++ ++  N  ++LVG
Sbjct: 61  IWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVG 120

Query: 126 NKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEI 185
           NK D+   R VS+E     A+     F E SA +++NV+  F  ++  I   +S      
Sbjct: 121 NKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTA 180

Query: 186 GDDPAALPKGQTINV 200
                   +G  +  
Sbjct: 181 DPAVTGAKQGPQLTD 195

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  325 bits (835), Expect = e-115
 Identities = 75/180 (41%), Positives = 115/180 (63%)

Query: 2   GAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKI 61
           G+  A  +     K+VL+GD G GKS+L+ RF +++F    +STIG  F ++++  +D  
Sbjct: 1   GSMAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDAT 60

Query: 62  VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVI 121
           VK +IWDTAGQERY ++   YYRGA  A++V+DVT   +FE  ++W++EL+   + N+V+
Sbjct: 61  VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVM 120

Query: 122 MLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRK 181
            L GNK+DL   R V+ EDA  +A+    FFMETSA  + NV+  F E+  ++ RV   +
Sbjct: 121 ALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTE 180

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  324 bits (834), Expect = e-115
 Identities = 90/178 (50%), Positives = 113/178 (63%)

Query: 6   ADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQ 65
                 YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R +  D K +K Q
Sbjct: 14  LVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQ 73

Query: 66  IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVG 125
           IWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H+ SN+VIML+G
Sbjct: 74  IWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIG 133

Query: 126 NKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKAL 183
           NK+DL   R V  E+  AFA      FMETSA  + NVE AF     +IYR + +   
Sbjct: 134 NKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGLF 191

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  323 bits (830), Expect = e-114
 Identities = 86/186 (46%), Positives = 119/186 (63%)

Query: 5   RADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKA 64
             + +YDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R+I  D K +K 
Sbjct: 8   SMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 67

Query: 65  QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLV 124
           QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL+E+  +   N+  +LV
Sbjct: 68  QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLV 127

Query: 125 GNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALE 184
           GNK DL   + V    A  FA+     F+ETSA  + NVE +F  +  +I + +   A  
Sbjct: 128 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATA 187

Query: 185 IGDDPA 190
            G + +
Sbjct: 188 GGAEKS 193

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  323 bits (830), Expect = e-114
 Identities = 75/184 (40%), Positives = 118/184 (64%)

Query: 1   MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK 60
           +    + +DYD+LFK+VLIG++GVGK+ L+ RFT+  F     +TIGV+F  +++  + +
Sbjct: 14  LVPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGE 73

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV 120
            VK QIWDTAGQER+R+IT +YYR A   +L YD+T   +F  +  WL+E+  +  + ++
Sbjct: 74  KVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVI 133

Query: 121 IMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSR 180
            +LVGNK DL   R VS + A  F+E ++ +++ETSA ES NVE  F ++  ++     +
Sbjct: 134 TVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQ 193

Query: 181 KALE 184
             L 
Sbjct: 194 NTLV 197

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  319 bits (820), Expect = e-112
 Identities = 66/215 (30%), Positives = 115/215 (53%), Gaps = 9/215 (4%)

Query: 1   MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK 60
           M       +    FK+V +G+  VGK++L++RF  + F    ++TIG++F ++++  +D+
Sbjct: 4   MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 63

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV 120
            V+ Q+WDTAG ER+R++  +Y R +  A++VYD+T   +F+   +W+ ++R    S+++
Sbjct: 64  TVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI 123

Query: 121 IMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSR 180
           IMLVGNK DL   R VS E+    A+  N  F+ETSA    NV+  F  V   +  + S 
Sbjct: 124 IMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMEST 183

Query: 181 KALEIGDDPAALPKGQTINVGTKDDVSAVKKVGCC 215
           +            +   I++  +         G C
Sbjct: 184 Q---------DRSREDMIDIKLEKPQEQPVSEGGC 209

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  317 bits (814), Expect = e-112
 Identities = 83/176 (47%), Positives = 118/176 (67%), Gaps = 1/176 (0%)

Query: 2   GAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKI 61
           G+   D+ YD+LFK+VL+GD+ VGK+ ++ RF    FS    STIGV+F  +++    K 
Sbjct: 18  GSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKR 77

Query: 62  VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVI 121
           VK QIWDTAGQER+R IT +YYR A GA+L YD+T+  +F +V  W++++R +  SNIV 
Sbjct: 78  VKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQ 137

Query: 122 MLVGNKADLRHLRAVSTEDATAFAERENT-FFMETSALESMNVENAFTEVLTQIYR 176
           +L+GNK+DL  LR VS  +A + AE  +    +ETSA +S NVE AF  V T++  
Sbjct: 138 LLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIM 193

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  316 bits (813), Expect = e-112
 Identities = 71/177 (40%), Positives = 109/177 (61%)

Query: 3   AYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIV 62
           +       DY+FK++LIG+S VGK++ L R+  + F+    ST+G++F  +++   DK +
Sbjct: 12  SGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRI 71

Query: 63  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM 122
           K QIWDTAGQERYR IT+AYYRGA+G LL+YD+    +F  V+ W  +++ ++  N  ++
Sbjct: 72  KLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVI 131

Query: 123 LVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVS 179
           LVGNK DL   R V  ED    A+     F E SA E++NV+  F  ++  I   ++
Sbjct: 132 LVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMN 188

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  316 bits (812), Expect = e-111
 Identities = 81/178 (45%), Positives = 115/178 (64%)

Query: 7   DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQI 66
              YDYLFK++LIGDSGVGK+ +L RF+ + F+    STIG++F  R+I  D K +K QI
Sbjct: 2   AKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQI 61

Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGN 126
           WDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W++ + +H  +++  M++GN
Sbjct: 62  WDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 121

Query: 127 KADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALE 184
           K D+   R VS E     A      FMETSA  ++NVENAF  +   I   + +    
Sbjct: 122 KCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKNWKA 179

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  315 bits (810), Expect = e-111
 Identities = 77/177 (43%), Positives = 109/177 (61%), Gaps = 1/177 (0%)

Query: 6   ADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRCDDKIVKA 64
             D YD  FKV+L+GDSGVGK+ LL RF    F   +  ST+G++F  + +  D   VK 
Sbjct: 3   GVDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKL 62

Query: 65  QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLV 124
           Q+WDTAGQER+R++T AYYR A   LL+YDVT   +F+N++ WL E+ ++   ++ +ML+
Sbjct: 63  QMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLL 122

Query: 125 GNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRK 181
           GNK D  H R V  ED    A+     FMETSA   +NV+ AFT +  ++ R   + 
Sbjct: 123 GNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMKA 179

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  315 bits (810), Expect = e-111
 Identities = 67/179 (37%), Positives = 107/179 (59%)

Query: 3   AYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIV 62
                       KV L+GD+GVGKS+++ RF ++ F      TIG  F T+++ C +++ 
Sbjct: 13  GLVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELH 72

Query: 63  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM 122
           K  IWDTAGQER+ ++   YYRG+  A++VYD+T+  +F  +++W+KEL++H   NIV+ 
Sbjct: 73  KFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMA 132

Query: 123 LVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRK 181
           + GNK DL  +R V  +DA  +AE      +ETSA  ++N+E  F  +  QI  +   +
Sbjct: 133 IAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHE 191

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  315 bits (809), Expect = e-111
 Identities = 84/172 (48%), Positives = 114/172 (66%)

Query: 5   RADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKA 64
             + +YDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R+I  D K +K 
Sbjct: 25  SMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 84

Query: 65  QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLV 124
           QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL+E+  +   N+  +LV
Sbjct: 85  QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLV 144

Query: 125 GNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
           GNK DL   + V    A  FA+     F+ETSA  + NVE +F  +  +I +
Sbjct: 145 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 196

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  315 bits (809), Expect = e-111
 Identities = 78/205 (38%), Positives = 118/205 (57%), Gaps = 3/205 (1%)

Query: 1   MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK 60
             +      YD + K++LIGDSGVGKS LL RF  ++F+    +TIG++F  +++  + K
Sbjct: 8   SASSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGK 67

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV 120
            VK Q+WDTAGQER+R IT+AYYRGA+G +LVYDVT   TF N+++W K + +H +    
Sbjct: 68  KVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQ 127

Query: 121 IMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSR 180
           ++LVGNK+D+   R V+ +   A A+     F+E+SA    NV   F  +   I   +  
Sbjct: 128 LLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 186

Query: 181 KALEIGDDPAALPKGQTINVGTKDD 205
             L    +        +IN G+ + 
Sbjct: 187 NKLVGVGNGK--EGNISINSGSGNS 209

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  313 bits (804), Expect = e-110
 Identities = 65/167 (38%), Positives = 101/167 (60%)

Query: 9   DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWD 68
              Y FKVVL+G+  VGK++L+ R+  N+F+ +  +T+G  F T+ +    K V   IWD
Sbjct: 2   SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWD 61

Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKA 128
           TAGQER+ A+   YYR + GA+LVYD+T   +F+ V+ W+KELR    + I + +VGNK 
Sbjct: 62  TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKI 121

Query: 129 DLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
           DL   R VS ++A ++AE        TSA ++  +E  F ++  ++ 
Sbjct: 122 DLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  313 bits (803), Expect = e-110
 Identities = 65/177 (36%), Positives = 109/177 (61%), Gaps = 1/177 (0%)

Query: 1   MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK 60
           +    +    D+  +V++IG  GVGK++L+ RFT + F    KST+GV+F  +++    K
Sbjct: 14  LVPRGSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGK 73

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV 120
            ++ QIWDTAGQER+ +ITSAYYR A G +LVYD+T+  TF+++ +W+K +  +   +  
Sbjct: 74  KIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAE 133

Query: 121 IMLVGNKADLRHLRAVSTEDATAFAERENT-FFMETSALESMNVENAFTEVLTQIYR 176
           ++LVGNK D    R ++ +    FA++     F E SA ++ NV+  F +++  I +
Sbjct: 134 LLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  312 bits (801), Expect = e-110
 Identities = 57/177 (32%), Positives = 89/177 (50%), Gaps = 4/177 (2%)

Query: 9   DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKI-VKAQIW 67
            +    K+V++GD   GK++L + F +  F  + K TIG++F  R I     + V  QIW
Sbjct: 2   SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIW 61

Query: 68  DTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWL---KELRDHTDSNIVIMLV 124
           D  GQ     +   Y  GA G LLVYD+T + +FEN+E W    K++ + +++  ++ LV
Sbjct: 62  DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV 121

Query: 125 GNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRK 181
           GNK DL H+R +  E    F +         SA    +V   F +V  +I  +   K
Sbjct: 122 GNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLNK 178

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  312 bits (802), Expect = e-110
 Identities = 71/175 (40%), Positives = 112/175 (64%)

Query: 5   RADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKA 64
               ++DY+FK+++IG+S VGK++ L R+  + F+    ST+G++F  +++   +K VK 
Sbjct: 15  YFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKL 74

Query: 65  QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLV 124
           QIWDTAGQERYR IT+AYYRGA+G +L+YD+T   +F  V+ W  +++ ++  N  ++LV
Sbjct: 75  QIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILV 134

Query: 125 GNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVS 179
           GNK D+   R V TE     AE+    F E SA E+++V  AF  ++  I   +S
Sbjct: 135 GNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 189

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  312 bits (801), Expect = e-110
 Identities = 69/193 (35%), Positives = 114/193 (59%), Gaps = 11/193 (5%)

Query: 3   AYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCD---- 58
              +D DYDYL K + +GDSGVGK+++L ++T  +F+ +  +T+G++F  + +       
Sbjct: 1   GSMSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGP 60

Query: 59  ------DKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR 112
                  + +  Q+WDTAG ER+R++T+A++R A+G LL++D+T   +F NV  W+ +L+
Sbjct: 61  DGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQ 120

Query: 113 DHTDS-NIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVL 171
            H  S N  I+L GNK+DL   RAV  E+A   AE+    + ETSA    N+ +A   +L
Sbjct: 121 MHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLL 180

Query: 172 TQIYRVVSRKALE 184
             I + + R   +
Sbjct: 181 DLIMKRMERSVDK 193

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  310 bits (797), Expect = e-109
 Identities = 85/178 (47%), Positives = 113/178 (63%), Gaps = 1/178 (0%)

Query: 7   DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQI 66
             DYD+LFK+++IGDSGVGKS+LL RF  N FS    +TIGV+F  R++  + + VK QI
Sbjct: 3   ARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQI 62

Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGN 126
           WDTAGQER+R ITS YYRG  G ++VYDVT   +F NV+RWL E+  + D ++  +LVGN
Sbjct: 63  WDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGN 121

Query: 127 KADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALE 184
           K D    + V TEDA  FA +      ETSA E++NVE  F  +   + R       +
Sbjct: 122 KNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAK 179

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  310 bits (796), Expect = e-109
 Identities = 81/184 (44%), Positives = 109/184 (59%), Gaps = 2/184 (1%)

Query: 2   GAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKI 61
           G+   D+D     K+++IG+SGVGKS+LL RFT + F  E  +TIGV+F  ++I  D   
Sbjct: 4   GSSGMDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNK 63

Query: 62  VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSN-IV 120
            K  IWDTAGQER+R +T +YYRGA G +LVYDVTR  TF  ++ WL EL  +   N IV
Sbjct: 64  AKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIV 123

Query: 121 IMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSR 180
            MLVGNK D    R V   +   FA + +  F+E SA     V+ AF E++ +I +    
Sbjct: 124 NMLVGNKIDK-ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGL 182

Query: 181 KALE 184
              E
Sbjct: 183 WESE 186

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  308 bits (792), Expect = e-109
 Identities = 66/163 (40%), Positives = 103/163 (63%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            KV L+GD+GVGKS+++ RF  + F      TIG  F T++++  +++ K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           R+RA+   YYRG+  A++VYD+T+  TF  ++ W++ELR H   +IV+ + GNK DL  +
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126

Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
           R V   DA  +A+  +  F+ETSA  ++N+   F E+  +I  
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPS 169

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  310 bits (796), Expect = e-109
 Identities = 70/193 (36%), Positives = 113/193 (58%), Gaps = 11/193 (5%)

Query: 3   AYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKI- 61
             R   DYDYL K++ +GDSGVGK+  L R+T N+F+ +  +T+G++F  + +  + +  
Sbjct: 15  VPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGP 74

Query: 62  ---------VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR 112
                    V  Q+WDTAGQER+R++T+A++R A+G LL++D+T   +F NV  W+ +L+
Sbjct: 75  NGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQ 134

Query: 113 DHTDS-NIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVL 171
            +    N  I+L+GNKADL   R V+   A   A++    + ETSA    NVE A   +L
Sbjct: 135 ANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLL 194

Query: 172 TQIYRVVSRKALE 184
             I + + +   +
Sbjct: 195 DLIMKRMEQCVEK 207

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  310 bits (795), Expect = e-108
 Identities = 51/204 (25%), Positives = 93/204 (45%), Gaps = 4/204 (1%)

Query: 3   AYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVE-FATRSIRCDDKI 61
              + +  +  +K+ LIGD GVGK+  ++R     F     +T+G        +     +
Sbjct: 1   GPGSMERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNV 60

Query: 62  VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVI 121
           +K  +WDTAGQE+   +   YY GA GA+L +DVT  +T +N+ RW+KE +    +   I
Sbjct: 61  IKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPI 120

Query: 122 MLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRK 181
           ++  NK D+++ + +S +      + +N  + E SA  + N    F  +         R 
Sbjct: 121 VVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTG---RP 177

Query: 182 ALEIGDDPAALPKGQTINVGTKDD 205
            L    +    P     +  + ++
Sbjct: 178 DLIFVSNVNLEPTEVNYDYHSPEE 201

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  306 bits (786), Expect = e-108
 Identities = 76/165 (46%), Positives = 108/165 (65%)

Query: 12  YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAG 71
             FK+VL+G+S VGKS+L+ RF + +F    +STIG  F T+++  DD  VK +IWDTAG
Sbjct: 5   CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64

Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR 131
           QERY ++   YYRGA  A++VYD+T   +F   + W+KEL+     NIVI L GNKADL 
Sbjct: 65  QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124

Query: 132 HLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
           + RAV  ++A ++A+  +  FMETSA  SMNV   F  +  ++ +
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  306 bits (787), Expect = e-108
 Identities = 65/180 (36%), Positives = 102/180 (56%), Gaps = 5/180 (2%)

Query: 2   GAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKI 61
           G+         +FK+++IGDS VGK+ L  RF    F   +++TIGV+F  R++  D + 
Sbjct: 9   GSLVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGER 68

Query: 62  VKAQIWDTAGQERYR-AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSN-I 119
           +K Q+WDTAGQER+R ++   YYR     + VYD+T   +F ++  W++E + H  +N I
Sbjct: 69  IKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDI 128

Query: 120 VIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSAL---ESMNVENAFTEVLTQIYR 176
             +LVGNK DLR    V T+ A  FA+  +    ETSA    ++ +VE  F  +  ++  
Sbjct: 129 PRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKS 188

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  306 bits (786), Expect = e-108
 Identities = 63/175 (36%), Positives = 107/175 (61%)

Query: 3   AYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIV 62
           +     +    FK+V +G+  VGK++L++RF  + F    ++TIG++F ++++  +D+ V
Sbjct: 4   SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV 63

Query: 63  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM 122
           + Q+WDTAGQER+R++  +Y R +  A++VYD+T   +F    +W+ ++R    S+++IM
Sbjct: 64  RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIM 123

Query: 123 LVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRV 177
           LVGNK DL   R VSTE+    A+  N  F+ETSA    NV+  F  V   +  +
Sbjct: 124 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 178

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  306 bits (787), Expect = e-107
 Identities = 63/177 (35%), Positives = 94/177 (53%), Gaps = 6/177 (3%)

Query: 6   ADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQ 65
                   +K+VL GD+ VGKS+ L R  +NEF     +T+GV+F  +++  D +    Q
Sbjct: 21  KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQ 80

Query: 66  IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVG 125
           +WDTAGQER+R+I  +Y+R A G LL+YDVT   +F N+  W+  + D     + IMLVG
Sbjct: 81  LWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVG 140

Query: 126 NKADLRHL------RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
           NKAD+R        + V        A      F ETSA +  N+  A   +  ++ +
Sbjct: 141 NKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKK 197

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  304 bits (780), Expect = e-107
 Identities = 59/167 (35%), Positives = 93/167 (55%), Gaps = 1/167 (0%)

Query: 10  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDT 69
            +   K+V++G+  VGKS+++ R+ +  F+ + K TIGV+F  R I+ +D+ V+  +WDT
Sbjct: 2   SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDT 61

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKAD 129
           AGQE + AIT AYYRGA   +LV+  T   +FE +  W +++      +I   LV NK D
Sbjct: 62  AGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKID 120

Query: 130 LRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
           L     +  E+A   A+R    F  TS  E +NV   F  +  +  +
Sbjct: 121 LLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  301 bits (773), Expect = e-106
 Identities = 73/169 (43%), Positives = 108/169 (63%), Gaps = 1/169 (0%)

Query: 11  DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTA 70
           D + K++LIGDSGVGKS LL RF  ++F+    +TIG++F  +++  + K VK QIWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60

Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL 130
           GQER+R IT+AYYRGA+G +LVYD+T   TF N+++W K + +H +    ++LVGNK+D+
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120

Query: 131 RHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVS 179
              R V+ +   A A+     F+E+SA    NV   F  +   I   + 
Sbjct: 121 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKID 168

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  301 bits (774), Expect = e-105
 Identities = 67/212 (31%), Positives = 111/212 (52%), Gaps = 11/212 (5%)

Query: 8   DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIW 67
                L KV+++GDSGVGK++L++++   +FS + K+TIG +F T+ +  DD++V  QIW
Sbjct: 3   SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIW 62

Query: 68  DTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD----SNIVIML 123
           DTAGQER++++  A+YRGA   +LV+DVT   TF+ ++ W  E           N   ++
Sbjct: 63  DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVV 122

Query: 124 VGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKAL 183
           +GNK DL + +  +         + N  + ETSA E++NVE AF  +     +  +   L
Sbjct: 123 LGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVEL 182

Query: 184 EIGDDPAALPKGQTINVGTKDDVSAVKKVGCC 215
                       + I +   +   A  +   C
Sbjct: 183 Y-------NEFPEPIKLDKNERAKASAESCSC 207

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  300 bits (770), Expect = e-105
 Identities = 55/190 (28%), Positives = 87/190 (45%), Gaps = 9/190 (4%)

Query: 7   DDDYDYLFKVVLIGDSGVGKSNLLSRFTR--NEFSLESKSTIGVEFATRSIRCDDKIVKA 64
           D       KV ++G++ VGKS L+S FT   ++F  +   T GVE     +   D  V  
Sbjct: 14  DITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSV 73

Query: 65  QIW--DTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRD---HTDSNI 119
           +++  DTAG + Y+   S Y+ G   A+LV+DV+   +FE+ + W + L+      +  +
Sbjct: 74  ELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPL 133

Query: 120 VIMLVGNKADLRHLR-AVSTEDATAFAERENTFFMETSA-LESMNVENAFTEVLTQIYRV 177
             +LV NK DL   R  V  + A  +A      F + SA     + +  F  + T  YR 
Sbjct: 134 RAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRN 193

Query: 178 VSRKALEIGD 187
              K     D
Sbjct: 194 YEDKVAAFQD 203

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  296 bits (760), Expect = e-104
 Identities = 67/173 (38%), Positives = 101/173 (58%), Gaps = 6/173 (3%)

Query: 9   DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWD 68
               LFKV+L+GD GVGKS+L++R+  N+F  +   TIGVEF  + +  D   V  QIWD
Sbjct: 3   GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWD 62

Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD----SNIVIMLV 124
           TAGQER+R++ + +YRG+   LL + V    +F+N+  W KE   + D     +   +++
Sbjct: 63  TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 122

Query: 125 GNKADLRHLRAVSTEDATAFAERENT-FFMETSALESMNVENAFTEVLTQIYR 176
           GNK D+   R VSTE+A A+        + ETSA ++ NV  AF E + ++  
Sbjct: 123 GNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 174

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  293 bits (753), Expect = e-102
 Identities = 59/197 (29%), Positives = 97/197 (49%), Gaps = 6/197 (3%)

Query: 3   AYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIV 62
           A  A  +    FK+VL+GD G GK+  + R    EF  +  +T+GVE        +   +
Sbjct: 5   ASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPI 64

Query: 63  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM 122
           K  +WDTAGQE++  +   YY  A  A++++DVT  VT++NV  W ++L    + NI I+
Sbjct: 65  KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIV 123

Query: 123 LVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKA 182
           L GNK D++  +      +  F  ++N  + + SA  + N E  F  +  ++        
Sbjct: 124 LCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG---DPN 178

Query: 183 LEIGDDPAALPKGQTIN 199
           LE    PA  P    ++
Sbjct: 179 LEFVAMPALAPPEVVMD 195

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  285 bits (731), Expect = 2e-99
 Identities = 63/176 (35%), Positives = 102/176 (57%), Gaps = 7/176 (3%)

Query: 8   DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCD-DKIVKAQI 66
                + KV+++GDSGVGK++L+ R+  +++S + K+TIG +F T+ +  D DK+   Q+
Sbjct: 3   SRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQV 62

Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD----SNIVIM 122
           WDTAGQER++++  A+YRGA   +LVYDVT   +FEN++ W  E   H +         +
Sbjct: 63  WDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFV 122

Query: 123 LVGNKADLRHL-RAVSTEDATAFAERENT-FFMETSALESMNVENAFTEVLTQIYR 176
           ++GNK D     + VS + A   A+         TSA  ++NV+ AF E+     +
Sbjct: 123 ILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 178

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  268 bits (686), Expect = 3e-92
 Identities = 61/207 (29%), Positives = 99/207 (47%), Gaps = 40/207 (19%)

Query: 9   DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKA---- 64
           +    +K VL+G+S VGKS+++ R T++ F   + +TIG  F T  +  +D  +K     
Sbjct: 3   EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNN 62

Query: 65  ---------------------------------QIWDTAGQERYRAITSAYYRGAVGALL 91
                                             IWDTAGQERY +I   YYRGA  A++
Sbjct: 63  EKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIV 122

Query: 92  VYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTF 151
           V+D++   T +  + W+ +L+    SN +I+LV NK D      V   +   +A+  N  
Sbjct: 123 VFDISNSNTLDRAKTWVNQLK--ISSNYIIILVANKIDKNK-FQVDILEVQKYAQDNNLL 179

Query: 152 FMETSALESMNVENAFTEVLTQIYRVV 178
           F++TSA    N++N F  +  +IY+ +
Sbjct: 180 FIQTSAKTGTNIKNIFYMLAEEIYKNI 206

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  258 bits (662), Expect = 9e-89
 Identities = 50/177 (28%), Positives = 74/177 (41%), Gaps = 2/177 (1%)

Query: 7   DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQI 66
               D +FKV+L+G+SGVGKS L   F   +     +     +   R I  D + V   +
Sbjct: 17  QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVV 76

Query: 67  WDTAGQERYRA-ITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIMLV 124
           +D   Q      +     +     L+V+ VT   +F  V   L  LR      ++ ++LV
Sbjct: 77  YDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILV 136

Query: 125 GNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRK 181
           GNK+DL   R VS E+    A   +   +ETSA    N    F   + QI     R 
Sbjct: 137 GNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGRN 193

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  246 bits (629), Expect = 4e-84
 Identities = 66/166 (39%), Positives = 97/166 (58%), Gaps = 3/166 (1%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K+VL+G++ VGKS+++ RF  N+F+   + TIG  F T+ +  ++  VK +IWDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           R+ ++   YYR A  AL+VYDVT+  +F     W+KEL +    +I+I LVGNK D    
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123

Query: 134 ---RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
              R V+ E+    AE +   F ETSA    NV + F  +  +I  
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPL 169

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  245 bits (628), Expect = 7e-84
 Identities = 48/166 (28%), Positives = 72/166 (43%), Gaps = 2/166 (1%)

Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
           +FKV+L+G+SGVGKS L   F   +     +     +   R I  D + V   ++D   Q
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61

Query: 73  ERYRA-ITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIMLVGNKADL 130
                 +     +     L+V+ VT   +F  V   L  LR      ++ ++LVGNK+DL
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 121

Query: 131 RHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
              R VS E+    A   +   +ETSA    N    F   + QI  
Sbjct: 122 ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL 167

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  238 bits (610), Expect = 5e-81
 Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 4/167 (2%)

Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
           L++VVL+GD GVGK++L S F   +   +    +G +   R++  D +     + DT   
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQE-RDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEA 62

Query: 73  ERYRAITS--AYYRGAVGALLVYDVTRHVTFENVERWLKEL-RDHTDSNIVIMLVGNKAD 129
           E+     S  +  +G    ++VY +    +FE+      +L R H   ++ I+LVGNKAD
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122

Query: 130 LRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
           L   R VS E+  A A   +  F+ETSA    NV   F  V+ Q+  
Sbjct: 123 LARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRL 169

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  237 bits (607), Expect = 2e-80
 Identities = 60/173 (34%), Positives = 92/173 (53%), Gaps = 2/173 (1%)

Query: 5   RADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKA 64
               +   L KV+++G  GVGKS L  +F  +EF  + + T    +  + +  D + V+ 
Sbjct: 10  GGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQI 68

Query: 65  QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIML 123
            I DTAGQE Y AI   Y+R   G L V+ +T   +F     + ++ LR   D N+  +L
Sbjct: 69  DILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLL 128

Query: 124 VGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
           VGNK+DL   R VS E+A   AE+ N  ++ETSA    NV+  F +++ +I  
Sbjct: 129 VGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA 181

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  237 bits (606), Expect = 5e-80
 Identities = 52/182 (28%), Positives = 88/182 (48%), Gaps = 7/182 (3%)

Query: 5   RADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEFATRSIRCDDK--- 60
            + +  +  ++VVLIG+ GVGKS L + F     S++S    +G +   R++  D +   
Sbjct: 29  ISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESAT 88

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-NI 119
           I+   +W+  G+  +  +     +     L+VY +T   +FE       +LR    + +I
Sbjct: 89  IILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDI 146

Query: 120 VIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVS 179
            I+LVGNK+DL   R VS  +  A A   +  F+ETSA    NV+  F  ++ Q+     
Sbjct: 147 PIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRD 206

Query: 180 RK 181
            K
Sbjct: 207 SK 208

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  236 bits (604), Expect = 1e-79
 Identities = 65/217 (29%), Positives = 103/217 (47%), Gaps = 15/217 (6%)

Query: 1   MGAYRA-DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDD 59
           M A +    +   L KV+++G  GVGKS L  +F  +EF  + + T    +  + +  D 
Sbjct: 1   MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDG 59

Query: 60  KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSN 118
           + V+  I DTAGQE Y AI   Y+R   G L V+ +T   +F     + ++ LR   D N
Sbjct: 60  EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 119

Query: 119 IVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVV 178
           +  +LVGNK+DL   R VS E+A   AE+ N  ++ETSA    NV+  F +++ +I    
Sbjct: 120 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARK 179

Query: 179 SRKALEIGDDPAALPKGQTINVGTKDDVSAVKKVGCC 215
              + E                  +  ++   +  CC
Sbjct: 180 MEDSKEKNGKK------------KRKSLAKRIRERCC 204

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  231 bits (593), Expect = 1e-78
 Identities = 59/165 (35%), Positives = 91/165 (55%), Gaps = 2/165 (1%)

Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
           L KV+++G  GVGKS L  +F  +EF  + + T    +  + +  D + V+  I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQ 62

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLR 131
           E Y AI   Y+R   G L V+ +T   +F     + ++ LR   D N+  +LVGNK+DL 
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122

Query: 132 HLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
             R VS E+A   A++ N  ++ETSA    NV+  F +++ +I  
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  226 bits (580), Expect = 1e-76
 Identities = 53/165 (32%), Positives = 79/165 (47%), Gaps = 3/165 (1%)

Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
           ++KV+L+G  GVGKS L   F   E   E+    G  +  RSI  D +     ++D   Q
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAGHTY-DRSIVVDGEEASLMVYDIWEQ 59

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIMLVGNKADLR 131
           +  R +           ++VY VT   +FE       +LR    + ++ I+LVGNK+DL 
Sbjct: 60  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119

Query: 132 HLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
             R VS ++  A A   +  F+ETSA    NV+  F  V+ QI  
Sbjct: 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRL 164

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  226 bits (578), Expect = 6e-76
 Identities = 54/176 (30%), Positives = 86/176 (48%), Gaps = 2/176 (1%)

Query: 3   AYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIV 62
            Y          KVV++G   VGK++L  +F   EFS     T+   + ++ +       
Sbjct: 14  LYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEF 72

Query: 63  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVI 121
              + DTAGQ+ Y  +  ++  G  G +LVY VT   +F+ +E   ++    H  + + +
Sbjct: 73  HLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPV 132

Query: 122 MLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRV 177
           +LVGNKADL   R V   +    AE     FME+SA E+   +  FT+V+ +I RV
Sbjct: 133 VLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARV 188

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  224 bits (574), Expect = 2e-75
 Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 7/179 (3%)

Query: 8   DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEFATRSIRCDDK---IVK 63
           +     ++VVLIG+ GVGKS L + F     S++S    +G +   R++  D +   I+ 
Sbjct: 1   EFGMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIIL 60

Query: 64  AQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIM 122
             +W+  G+  +  +     +     L+VY +T   +FE       +LR    + +I I+
Sbjct: 61  LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118

Query: 123 LVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRK 181
           LVGNK+DL   R VS  +  A A   +  F+ETSA    NV+  F  ++ Q+      K
Sbjct: 119 LVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSK 177

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  224 bits (573), Expect = 2e-75
 Identities = 54/171 (31%), Positives = 85/171 (49%), Gaps = 2/171 (1%)

Query: 7   DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQI 66
           D       K+V++G  GVGKS L  +F ++ F  +   TI   + T+    D    +  I
Sbjct: 3   DPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDI 61

Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVG 125
            DTAGQE + A+   Y R   G LLV+ +    +F  V +   + LR     +  ++LVG
Sbjct: 62  LDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVG 121

Query: 126 NKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
           NKADL   R V   +A+AF    +  + E SA   +NV+ AF +++  + +
Sbjct: 122 NKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRK 172

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  221 bits (565), Expect = 4e-74
 Identities = 31/175 (17%), Positives = 74/175 (42%), Gaps = 11/175 (6%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSL--ESKSTIGVEFATRSIRCDDK---IVKAQIWD 68
            K++++G++G GK+ LL +  + + S      +T+G++     I+  DK    +   +WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVT-RHVTFENVERWLKELRDHTDSNIVIMLVGNK 127
            AG+E + +    +       L VYD++      + ++ WL  ++     +  ++LVG  
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS-SSPVILVGTH 121

Query: 128 ADL---RHLRAVSTEDATAFAEREN-TFFMETSALESMNVENAFTEVLTQIYRVV 178
            D+   +  +A  ++       +       +   + +    +A  ++   I    
Sbjct: 122 LDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINES 176

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  212 bits (543), Expect = 9e-71
 Identities = 56/178 (31%), Positives = 93/178 (52%), Gaps = 3/178 (1%)

Query: 1   MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK 60
           M       +    +K+V++GD GVGKS L  +F +  F  +   TI   +  +    D++
Sbjct: 6   MATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQ 64

Query: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-NI 119
                + DTAGQE + A+   Y R   G L+VY VT   +FE+V+R+ + +    D  + 
Sbjct: 65  WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESF 124

Query: 120 VIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALES-MNVENAFTEVLTQIYR 176
            ++LV NK DL HLR V+ +     A + N  ++ETSA +  +NV+  F +++  I +
Sbjct: 125 PMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  209 bits (535), Expect = 1e-69
 Identities = 55/168 (32%), Positives = 81/168 (48%), Gaps = 2/168 (1%)

Query: 10  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDT 69
                K+ ++G   VGKS+L  +F   +F      TI   F T+ I  + +    Q+ DT
Sbjct: 3   QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDT 61

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIMLVGNKA 128
           AGQ+ Y      Y     G +LVY VT   +FE ++    +L D      I IMLVGNK 
Sbjct: 62  AGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKK 121

Query: 129 DLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
           DL   R +S E+  A AE  N  F+E+SA E+    + F  ++ +  +
Sbjct: 122 DLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEK 169

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  208 bits (531), Expect = 9e-69
 Identities = 57/170 (33%), Positives = 82/170 (48%), Gaps = 4/170 (2%)

Query: 9   DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWD 68
           +    ++VV+ G  GVGKS+L+ RF +  F      TI   +  + I CD  +   QI D
Sbjct: 4   EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITD 62

Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS--NIVIMLVGN 126
           T G  ++ A+           +LV+ VT   + E +    K +     S  +I +MLVGN
Sbjct: 63  TTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGN 122

Query: 127 KADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
           K D    R V T +A A A+     FMETSA  + NV+  F E+LT   R
Sbjct: 123 KCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETR 171

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  206 bits (526), Expect = 2e-68
 Identities = 53/164 (32%), Positives = 88/164 (53%), Gaps = 3/164 (1%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           +K+V++G  GVGKS L  +  +N F  E   TI   +  + +  D +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIMLVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   DS ++ ++LVGNK+DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122

Query: 133 LRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
            R V +  A   A      ++ETSA     VE+AF  ++ +I +
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  206 bits (526), Expect = 3e-68
 Identities = 53/165 (32%), Positives = 80/165 (48%), Gaps = 3/165 (1%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           ++V + G  GVGKS+L+ RF +  F      T+   +  + I CD  I   QI DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSH 62

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS--NIVIMLVGNKADLR 131
           ++ A+           +LVY +T   + E ++   +++ +      +I IMLVGNK D  
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122

Query: 132 HLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
             R V + +A A A      FMETSA  + NV+  F E+L    R
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKR 167

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  201 bits (515), Expect = 1e-66
 Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 2/164 (1%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           +KVV++G  GVGKS L  +F    F  +   TI  +F  + I  D      +I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIMLVGNKADLRH 132
           ++ ++   Y +   G +LVY +    +F++++    ++        + ++LVGNK DL  
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122

Query: 133 LRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
            R VS+ +  A AE     FMETSA     V+  F E++ Q+  
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNY 166

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  202 bits (515), Expect = 2e-66
 Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 3/169 (1%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           +K+V++G  GVGKS L  +  +N F  E   TI   +  + +  D +     I DTAGQE
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 80

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIMLVGNKADLRH 132
            Y A+   Y R   G L V+ +    +F ++  + ++++   DS ++ ++LVGNK DL  
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-P 139

Query: 133 LRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRK 181
            R V T+ A   A+     F+ETSA     VE+AF  ++ +I +   +K
Sbjct: 140 TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKK 188

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  199 bits (508), Expect = 2e-65
 Identities = 54/164 (32%), Positives = 87/164 (53%), Gaps = 3/164 (1%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           +K+V++G  GVGKS L  +  +N F  E   TI   +  + +  D +     I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 63

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIMLVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++  + ++++   DS ++ ++LVGNK DL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123

Query: 133 LRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
            R V T+ A   A      F+ETSA     V++AF  ++ +I +
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  198 bits (507), Expect = 2e-65
 Identities = 45/170 (26%), Positives = 73/170 (42%), Gaps = 6/170 (3%)

Query: 11  DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTA 70
                + ++G  G GKS L  +F    F  E    +   + +     D + V  ++ DTA
Sbjct: 19  PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTA 77

Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDH---TDSNIVIMLVGNK 127
             +  R     Y   A   L+VY V    +F++   +L+ L  H   T  +I  +L+GNK
Sbjct: 78  DLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNK 136

Query: 128 ADLRHLRAVSTEDATAFAERENTFFMETSALESM-NVENAFTEVLTQIYR 176
            D+   R V+  +  A A R    F E SA     +V++ F E + +  R
Sbjct: 137 LDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARR 186

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  199 bits (508), Expect = 3e-65
 Identities = 58/169 (34%), Positives = 80/169 (47%), Gaps = 4/169 (2%)

Query: 10  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDT 69
                K+ + G +GVGKS L+ RF    F  E   T+   +       DD++V  +I DT
Sbjct: 25  KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDT 83

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIMLVGNKA 128
           AGQE        + R   G +LVYD+T   +FE V      L +     N+ ++LVGNKA
Sbjct: 84  AGQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKA 142

Query: 129 DLRHLRAVSTEDATAFAERENTFFMETSALES-MNVENAFTEVLTQIYR 176
           DL H R VSTE+    A      F E SA     N+   F E+  ++ R
Sbjct: 143 DLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR 191

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  198 bits (505), Expect = 3e-65
 Identities = 52/165 (31%), Positives = 87/165 (52%), Gaps = 3/165 (1%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           +K+V++G  GVGKS L  +F +  F  +   TI   +  + +  D +    +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIMLVGNKADLRH 132
           ++ A+   Y +   G  LVY +T   TF +++   +++    D+ ++ ++LVGNK DL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 133 LRAVSTEDATAFAER-ENTFFMETSALESMNVENAFTEVLTQIYR 176
            R V  E     A +  N  F+E+SA   +NV   F +++ QI R
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  199 bits (506), Expect = 3e-61
 Identities = 35/180 (19%), Positives = 59/180 (32%), Gaps = 12/180 (6%)

Query: 5   RADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSI--------R 56
                +    KV LIGD   GK++LL +     F  +   T G+   T+           
Sbjct: 33  GEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLEND 92

Query: 57  CDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD 116
            + K      WD  GQE   A    +   +   +L+ D     T  N   WL+ +  +  
Sbjct: 93  DELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKYGG 149

Query: 117 SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
               +++V NK D      +  +            F   S      VE+    + + +  
Sbjct: 150 -KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLH 208

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  181 bits (462), Expect = 2e-58
 Identities = 33/167 (19%), Positives = 67/167 (40%), Gaps = 11/167 (6%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            KV ++G+   GKS L+ R+    +  + +S  G  F  + I  D +     I D  G  
Sbjct: 21  LKVGIVGNLSSGKSALVHRYLTGTYV-QEESPEGGRF-KKEIVVDGQSYLLLIRDEGGPP 78

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIMLVGNKADLR- 131
             +     +       + V+ +   ++F+ V  +   L    ++  + ++LVG +  +  
Sbjct: 79  ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISA 133

Query: 132 -HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVLTQIYR 176
            + R +    A   +       + ET A   +NVE  F +V  ++  
Sbjct: 134 ANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVA 180

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  178 bits (453), Expect = 3e-57
 Identities = 37/178 (20%), Positives = 74/178 (41%), Gaps = 13/178 (7%)

Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
             ++ ++GD+  GKS+L+ RF    +    + T   ++  + +  D +     I + AG 
Sbjct: 7   ELRLGVLGDARSGKSSLIHRFLTGSYQ-VLEKTESEQY-KKEMLVDGQTHLVLIREEAGA 64

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE---LRDHTDSNIVIMLVG--NK 127
              +     +   A   + V+ +    +F+ V R   +   LR      + + LVG  ++
Sbjct: 65  PDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDR 119

Query: 128 ADLRHLRAVSTEDATAF-AERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALE 184
                 R V    A A  A+ +   + ET A   +NV+  F EV  ++  +  ++ L 
Sbjct: 120 ISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQQLL 177

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  157 bits (400), Expect = 6e-49
 Identities = 41/168 (24%), Positives = 79/168 (47%), Gaps = 6/168 (3%)

Query: 6   ADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQ 65
             ++     K+V++GD  VGK+ LL  F++ E       T+   F+   ++  ++     
Sbjct: 16  KIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILH 74

Query: 66  IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLV 124
           +WDTAGQE Y  +    Y  +   LL + V    +F+N+  +W  E++ + D     +LV
Sbjct: 75  LWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID-TAKTVLV 133

Query: 125 GNKADLRH--LRAVSTEDATAFAERENTF-FMETSALESMNVENAFTE 169
           G K DLR      V+ ++     ++     ++E S++  + +   F +
Sbjct: 134 GLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEK 181

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  145 bits (369), Expect = 2e-44
 Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 14/168 (8%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K V +GD  VGK+ LL  +T N F  +   T+   F+  ++  +   V   +WDTAGQE
Sbjct: 9   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGATVNLGLWDTAGQE 67

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRH 132
            Y  +    YRGA   +L + +    ++ENV ++W+ EL+ +    + I+LVG K DLR 
Sbjct: 68  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLRD 126

Query: 133 ----------LRAVSTEDATAFAERENTF-FMETSALESMNVENAFTE 169
                        ++T       +      ++E S+    NV+  F  
Sbjct: 127 DKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDA 174

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  144 bits (366), Expect = 1e-43
 Identities = 53/170 (31%), Positives = 74/170 (43%), Gaps = 16/170 (9%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            KVVL+GD G GK++LL  F    F      T+   +    ++   K V   IWDTAGQ+
Sbjct: 35  VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVN-LQVKGKPVHLHIWDTAGQD 93

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRH 132
            Y  +   +Y  A   LL +DVT   +F+N+  RW  E+       + I++VG K DLR 
Sbjct: 94  DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIVVGCKTDLRK 152

Query: 133 ------------LRAVSTEDATAFAERENTF-FMETSALESMNVENAFTE 169
                       L  V+       A       ++E SA    NV   F E
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQE 202

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  144 bits (364), Expect = 2e-43
 Identities = 53/178 (29%), Positives = 88/178 (49%), Gaps = 12/178 (6%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K V +GD  VGK+ +L  +T N+F  +   T+   F+  ++  D +IV   +WDTAGQE
Sbjct: 10  IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGQIVNLGLWDTAGQE 68

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLR- 131
            Y  +    YRGA   +L + +    ++ENV ++W+ ELR     N+ I+LVG K DLR 
Sbjct: 69  DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRD 127

Query: 132 -------HLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVLTQIYRVVSRK 181
                  H   +++       ++     ++E S+    NV+  F   +  + +   RK
Sbjct: 128 DKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 185

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  141 bits (358), Expect = 1e-42
 Identities = 52/179 (29%), Positives = 79/179 (44%), Gaps = 16/179 (8%)

Query: 5   RADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKA 64
           R         K+V++GD   GK+ LL  F++++F      T+  E     I  D K V+ 
Sbjct: 17  RGSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVEL 75

Query: 65  QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIML 123
            +WDTAGQE Y  +    Y      L+ + +    + EN+ E+W  E++     N+ I+L
Sbjct: 76  ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIIL 134

Query: 124 VGNKADLRH------------LRAVSTEDATAFAERENTF-FMETSALESMNVENAFTE 169
           VGNK DLR                V +E+    A R + F ++E SA     V   F  
Sbjct: 135 VGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEM 193

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  140 bits (355), Expect = 4e-42
 Identities = 52/169 (30%), Positives = 77/169 (45%), Gaps = 16/169 (9%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+V++GD   GK+ LL  F+++EF      T+   +    I  D K V+  +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 85

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRH- 132
           Y  +    Y      L+ + V    + EN+ E+W+ E++     N+ I+LV NK DLR  
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP-NVPIILVANKKDLRSD 144

Query: 133 -----------LRAVSTEDATAFAEREN-TFFMETSALESMNVENAFTE 169
                         V T+D  A A R     ++E SA     V   F  
Sbjct: 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFET 193

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  137 bits (348), Expect = 4e-41
 Identities = 53/170 (31%), Positives = 78/170 (45%), Gaps = 16/170 (9%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+  +  + ++  D K V   +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRH 132
            Y  +    Y      L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR 
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 148

Query: 133 ------------LRAVSTEDATAFAERENTF-FMETSALESMNVENAFTE 169
                       L  ++     A A+      ++E SAL    ++  F E
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  136 bits (345), Expect = 1e-40
 Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 17/180 (9%)

Query: 5   RADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKA 64
             D + +   K+V++GDS  GK+ LL  F ++ F      T+   +   S   D + ++ 
Sbjct: 20  HMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIEL 78

Query: 65  QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIML 123
            +WDT+G   Y  +    Y  +   L+ +D++R  T ++V ++W  E+++    N  ++L
Sbjct: 79  SLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLL 137

Query: 124 VGNKADLRH------------LRAVSTEDATAFAERENTF-FMETSALESMN-VENAFTE 169
           VG K+DLR                VS +     A++     ++E SAL+S N V + F  
Sbjct: 138 VGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHV 197

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  133 bits (336), Expect = 2e-39
 Identities = 46/170 (27%), Positives = 82/170 (48%), Gaps = 17/170 (10%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+V++GDS  GK+ LL  F ++ F      T+   +   S   D + ++  +WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWDTSGSPY 67

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRH- 132
           Y  +    Y  +   L+ +D++R  T ++V ++W  E+++    N  ++LVG K+DLR  
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTD 126

Query: 133 -----------LRAVSTEDATAFAERENTF-FMETSALESMN-VENAFTE 169
                         VS +     A++     ++E SAL+S N V + F  
Sbjct: 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHV 176

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  133 bits (336), Expect = 3e-39
 Identities = 51/181 (28%), Positives = 83/181 (45%), Gaps = 16/181 (8%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K VL+GD  VGK++L+  +T N +  E   T   +  +  +  D + V+ Q+ DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVRLQLCDTAGQDE 80

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRH- 132
           +  +    Y      LL + V    +F+NV E+W+ E+R H      I+LVG ++DLR  
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLRED 139

Query: 133 -----------LRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVLTQIYRVVSR 180
                       + V  E A   AE      ++E SAL   N++  F   +    +    
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSDT 199

Query: 181 K 181
           +
Sbjct: 200 Q 200

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  131 bits (330), Expect = 1e-38
 Identities = 53/169 (31%), Positives = 79/169 (46%), Gaps = 16/169 (9%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K V++GD  VGK+ LL  +T N F  E   T+  +  + ++  D K V   +WDTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 65

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRH- 132
           Y  +    Y     +L+ + +    +FENV  +W  E+R H   N  I+LVG K DLR  
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 124

Query: 133 -----------LRAVSTEDATAFAERENTF-FMETSALESMNVENAFTE 169
                      L  ++     A A+      ++E SAL    ++  F E
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 173

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  127 bits (321), Expect = 3e-37
 Identities = 46/179 (25%), Positives = 77/179 (43%), Gaps = 16/179 (8%)

Query: 5   RADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKA 64
            A      + K V++GD  VGK+ LL  +  + F  E   T+  +    S+    K    
Sbjct: 10  MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLL 68

Query: 65  QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIML 123
            ++DTAGQE Y  +    Y      L+ + V    +F+NV E W+ EL+++   N+  +L
Sbjct: 69  GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLL 127

Query: 124 VGNKADLRH------------LRAVSTEDATAFAERENTF-FMETSALESMNVENAFTE 169
           +G + DLR              + +  E     A+      ++E SAL    ++  F E
Sbjct: 128 IGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDE 186

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  127 bits (321), Expect = 4e-37
 Identities = 41/180 (22%), Positives = 80/180 (44%), Gaps = 17/180 (9%)

Query: 5   RADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKA 64
           RA        K+VL+GD   GK+ +L    ++ +      T+   +    +  +++ V+ 
Sbjct: 19  RAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-CLETEEQRVEL 77

Query: 65  QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIML 123
            +WDT+G   Y  +    Y  +   LL +D++R  T ++  ++W  E+ D+   +  ++L
Sbjct: 78  SLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLL 136

Query: 124 VGNKADLRH------------LRAVSTEDATAFAERENTF-FMETSALESM-NVENAFTE 169
           +G K DLR                +S E   A A++     ++E SA  S  ++ + F  
Sbjct: 137 IGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRT 196

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  115 bits (289), Expect = 6e-32
 Identities = 46/222 (20%), Positives = 77/222 (34%), Gaps = 66/222 (29%)

Query: 20  GDSGVGKSNLLSRFTR---NEFSLESKSTIG-VEFATRSIRCDDKI-------------- 61
           G  G+GKS L +RF R   +EF L+  S +   +F  R +  D  +              
Sbjct: 35  GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94

Query: 62  VKAQIW-------DTAGQERYRAITSAYYRGAV--------------------------- 87
            K  I        D   Q         Y + A                            
Sbjct: 95  CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQK 154

Query: 88  ----------GALLVYDVTRHV--TFENVERWLKELRDHTDS-NIVIMLVGNKADLRHLR 134
                     G LL  DV+R +   F++  +++  L +        I++V  K D    R
Sbjct: 155 QMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVER 214

Query: 135 AVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
            +      A + ++N   +ETSA  ++NV+ AF+ ++  I +
Sbjct: 215 YIRDAHTFALS-KKNLQVVETSARSNVNVDLAFSTLVQLIDK 255

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 97.4 bits (242), Expect = 2e-24
 Identities = 52/179 (29%), Positives = 79/179 (44%), Gaps = 16/179 (8%)

Query: 5   RADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKA 64
             D+    L K V++GD  VGK+ LL  +T N F  E   T+  +  + ++  D K V  
Sbjct: 147 NIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNL 205

Query: 65  QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIML 123
            +WDTAG E Y  +    Y      L+ + +    +F +V  +W  E+R H   N  I+L
Sbjct: 206 GLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIIL 264

Query: 124 VGNKADLRH------------LRAVSTEDATAFAERENTF-FMETSALESMNVENAFTE 169
           VG K DLR             L  ++     A A+      ++E SAL    ++  F E
Sbjct: 265 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 323

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 86.0 bits (213), Expect = 4e-21
 Identities = 37/186 (19%), Positives = 62/186 (33%), Gaps = 19/186 (10%)

Query: 14  FKVVLIGDSGVGKSNLL----------SRFTRNEFSLESKSTIGVEFATRSIR-CDDKIV 62
           FK+V  G    GK+  L           +      + E + T+  +F    I        
Sbjct: 15  FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKT 74

Query: 63  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERW---LKELRDHTDS-- 117
           +  ++   GQ  Y A      RG  G + V D   +    N E      + L ++  +  
Sbjct: 75  RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLD 134

Query: 118 NIVIMLVGNKADLRHLRAVSTED-ATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
           ++ I++  NK DL    A+  E              +E  A E   V     EV   +  
Sbjct: 135 DVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLA 192

Query: 177 VVSRKA 182
            V+  +
Sbjct: 193 RVAGGS 198

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 67.7 bits (165), Expect = 2e-14
 Identities = 34/179 (18%), Positives = 67/179 (37%), Gaps = 24/179 (13%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLES---KSTIGVEFATRSIRCDDKIVKAQIWDTAG 71
           +++L+G    GKS++           E+   +ST  +     S       V  QIWD  G
Sbjct: 22  RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISN---SSFVNFQIWDFPG 78

Query: 72  QERYRAITS---AYYRGAVGALLVYDVTRHVT--FENVERWLKELRDHTDSNIVIMLVGN 126
           Q  +   T      +RG    + V D           +   + +     + ++   +  +
Sbjct: 79  QMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIH 137

Query: 127 KADL----------RHLRAVSTED-ATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           K D           R +   + +D A A  E+ +  F  TS  +  ++  AF++V+ ++
Sbjct: 138 KVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDH-SIFEAFSKVVQKL 195

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 62.7 bits (152), Expect = 5e-12
 Identities = 35/181 (19%), Positives = 74/181 (40%), Gaps = 25/181 (13%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESK---STIGVEFATRSIRCDDKIVKAQIWDTAG 71
           K++L+G SG GKS++ S    N  + +++   +TI VE +          +   +WD  G
Sbjct: 5   KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRF---LGNMTLNLWDCGG 61

Query: 72  QERYRAIT-----SAYYRGAVGALLVYDVTRHVTFENVERW---LKELRDHTDSNIVIML 123
           Q+ +            ++     + V+DV      +++E +   LK+LR +   +  I +
Sbjct: 62  QDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKY-SPDAKIFV 120

Query: 124 VGNKADLRH--LRAVSTEDATAFAERE-------NTFFMETSALESMNVENAFTEVLTQI 174
           + +K DL     R    +                N     TS  +  ++  A+++++  +
Sbjct: 121 LLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSL 179

Query: 175 Y 175
            
Sbjct: 180 I 180

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 58.1 bits (141), Expect = 8e-11
 Identities = 29/177 (16%), Positives = 71/177 (40%), Gaps = 20/177 (11%)

Query: 10  YDYLF-----KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKA 64
           +  +F     +++++G    GK+ +L +    E    +  TIG  F   ++   +  +  
Sbjct: 21  FSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKN--ICF 75

Query: 65  QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIML 123
            +WD  GQ++ R +   Y++   G + V D       +     L+++    +  + V+++
Sbjct: 76  TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLV 135

Query: 124 VGNKADLRHLRAVSTEDAT------AFAERENTFFMETSALESMNVENAFTEVLTQI 174
             NK D+ +  A+   + T          R   +   T A +   + +    +  ++
Sbjct: 136 FANKQDMPN--AMPVSELTDKLGLQHLRSR-TWYVQATCATQGTGLYDGLDWLSHEL 189

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 57.6 bits (140), Expect = 9e-11
 Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 15/161 (9%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            +++++G  G GK+ +L R    E    +  TIG  F   ++    K +K Q+WD  G  
Sbjct: 8   MRILILGLDGAGKTTILYRLQVGEVV-TTIPTIG--FNVETVTY--KNLKFQVWDLGGLT 62

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRH 132
             R     YY      + V D          +  L  + +  +    ++++  NK D+  
Sbjct: 63  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 122

Query: 133 LRAVSTEDAT------AFAERENTFFMETSALESMNVENAF 167
             A+++ +        A  +R+   F  TSA +   ++ A 
Sbjct: 123 --AMTSSEMANSLGLPALKDRKWQIFK-TSATKGTGLDEAM 160

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 57.6 bits (140), Expect = 1e-10
 Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 7/128 (5%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            ++ L+G    GK+  ++     +F+ +   T+G  F  R I   +  V  ++WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGN--VTIKLWDIGGQP 78

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRH 132
           R+R++   Y RG    + + D       E  +  L  L D      I ++++GNK DL  
Sbjct: 79  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 138

Query: 133 LRAVSTED 140
             A+  ++
Sbjct: 139 --ALDEKE 144

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 57.3 bits (139), Expect = 1e-10
 Identities = 32/177 (18%), Positives = 65/177 (36%), Gaps = 19/177 (10%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            +V+++G    GK+++L R    +    +  T+G      +++   K +  ++WD  GQ 
Sbjct: 23  IRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVG--VNLETLQY--KNISFEVWDLGGQT 77

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRH 132
             R     Y+      + V D T        +  L  L D  +    ++++  NK DL  
Sbjct: 78  GVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPD 137

Query: 133 LRAVSTEDAT------AFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKAL 183
             A S  +        +   R  T    +S+     +     E +  +   +  + L
Sbjct: 138 --AASEAEIAEQLGVSSIMNRTWTIVK-SSSKTGDGLV----EGMDWLVERLREQGL 187

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 56.5 bits (137), Expect = 2e-10
 Identities = 32/160 (20%), Positives = 61/160 (38%), Gaps = 13/160 (8%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            +++++G  G GK+ +L R    E    +K TIG  F   ++    K +K  +WD  GQ 
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEVV-TTKPTIG--FNVETLSY--KNLKLNVWDLGGQT 73

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRH 132
             R     YY      + V D T         + L  +    +  +  +++  NK D   
Sbjct: 74  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 133

Query: 133 LRAVSTEDATAFAE-----RENTFFMETSALESMNVENAF 167
             A+S  + +           +   + +SA++   +    
Sbjct: 134 --ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGL 171

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 56.1 bits (136), Expect = 4e-10
 Identities = 32/168 (19%), Positives = 67/168 (39%), Gaps = 15/168 (8%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            KV+++G    GK+ +L +F+ NE    +  TIG       I  ++   +  +WD  GQE
Sbjct: 17  HKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIG--SNVEEIVINN--TRFLMWDIGGQE 71

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRH 132
             R+  + YY      ++V D T           L ++  H D     +++  NK D++ 
Sbjct: 72  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 131

Query: 133 LRAVSTEDAT------AFAERENTFFMETSALESMNVENAFTEVLTQI 174
              ++  + +      +  +          AL    +      +++++
Sbjct: 132 --CMTVAEISQFLKLTSIKDH-QWHIQACCALTGEGLCQGLEWMMSRL 176

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 55.3 bits (134), Expect = 5e-10
 Identities = 30/167 (17%), Positives = 65/167 (38%), Gaps = 15/167 (8%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           +++++G    GK+ +L +    E    +  TIG  F   ++   +  +   +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKN--ISFTVWDVGGQDK 56

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHL 133
            R +   Y++   G + V D             L  +    +  + V+++  NK DL + 
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN- 115

Query: 134 RAVSTED------ATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
            A++  +        +   R N +   T A     +      +  Q+
Sbjct: 116 -AMNAAEITDKLGLHSLRHR-NWYIQATCATSGDGLYEGLDWLSNQL 160

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 54.6 bits (132), Expect = 1e-09
 Identities = 32/161 (19%), Positives = 62/161 (38%), Gaps = 15/161 (9%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            KV+++G    GK+ +L +F+ NE    +  TIG       I  ++   +  +WD  GQE
Sbjct: 22  HKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIG--SNVEEIVINN--TRFLMWDIGGQE 76

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRH 132
             R+  + YY      ++V D T           L ++  H D     +++  NK D++ 
Sbjct: 77  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 136

Query: 133 LRAVSTEDAT------AFAERENTFFMETSALESMNVENAF 167
              ++  + +      +  +          AL    +    
Sbjct: 137 --CMTVAEISQFLKLTSIKDH-QWHIQACCALTGEGLCQGL 174

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 54.6 bits (132), Expect = 1e-09
 Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 8/128 (6%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            +++++G    GK+ +L +F   +       T+G  F  +++       K  IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLG--FNIKTLEHRG--FKLNIWDVGGQK 73

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRH 132
             R+    Y+    G + V D       ++ +R L+ L      +   +++  NK DL  
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 133

Query: 133 LRAVSTED 140
             A+S   
Sbjct: 134 --ALSCNA 139

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 53.0 bits (128), Expect = 5e-09
 Identities = 32/164 (19%), Positives = 66/164 (40%), Gaps = 17/164 (10%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKS-TIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
             V+ +G    GK+ ++++   +    ++   TIG  F+    +     +   ++D +GQ
Sbjct: 22  VHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQ 77

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD---SNIVIMLVGNKAD 129
            RYR +   YY+     + V D +  +     +  L  L +H D     I I+   NK D
Sbjct: 78  GRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMD 137

Query: 130 LRHLRAVSTEDAT------AFAERENTFFMETSALESMNVENAF 167
           LR   AV++   +         ++       + A++   ++   
Sbjct: 138 LRD--AVTSVKVSQLLCLENIKDK-PWHICASDAIKGEGLQEGV 178

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 51.8 bits (125), Expect = 1e-08
 Identities = 36/161 (22%), Positives = 62/161 (38%), Gaps = 15/161 (9%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            +++L+G    GK+ LL +    + S     T G  F  +S++   +  K  +WD  GQ 
Sbjct: 17  VRILLLGLDNAGKTTLLKQLASEDIS-HITPTQG--FNIKSVQS--QGFKLNVWDIGGQR 71

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRH 132
           + R    +Y+      + V D      FE   + L EL +    S + +++  NK DL  
Sbjct: 72  KIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLT 131

Query: 133 LRAVSTEDAT------AFAERENTFFMETSALESMNVENAF 167
             A    +           +R        SAL    V++  
Sbjct: 132 --AAPASEIAEGLNLHTIRDR-VWQIQSCSALTGEGVQDGM 169

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 50.9 bits (122), Expect = 3e-08
 Identities = 24/145 (16%), Positives = 55/145 (37%), Gaps = 21/145 (14%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
            V+ +G    GK+ L  R    ++  +++++I    A   +  +++     + D  G E 
Sbjct: 9   AVLFVGLCDSGKTLLFVRLLTGQYR-DTQTSITDSSAIYKVN-NNRGNSLTLIDLPGHES 66

Query: 75  YRA-ITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDH----------TDSNIVIML 123
            R  +   +   A   + V D          +R +K++ +             ++  +++
Sbjct: 67  LRFQLLDRFKSSARAVVFVVDSA------AFQREVKDVAEFLYQVLIDSMALKNSPSLLI 120

Query: 124 VGNKADLRHLRAVSTEDATAFAERE 148
             NK D+    A S +      E+E
Sbjct: 121 ACNKQDIAM--AKSAKLIQQQLEKE 143

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 8e-08
 Identities = 43/257 (16%), Positives = 82/257 (31%), Gaps = 63/257 (24%)

Query: 3   AYRADDDY----DYLFKVVLIG---DSGVGKSNLLSRFTRNEFSLESKSTIGVE-FATRS 54
           A+  + D     D   K +L     D  +   + +S   R  ++L SK    V+ F    
Sbjct: 28  AFVDNFDCKDVQDMP-KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV 86

Query: 55  IRCDDKIVKAQIWDTAGQERYRA---ITSAY--YR----GAVGALLVYDVTRHVTFENVE 105
           +R + K + + I     +   R    +T  Y   R            Y+V+R   +  + 
Sbjct: 87  LRINYKFLMSPI-----KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR 141

Query: 106 RWLKELRDHTDSNIVI--ML-VGNKADL--RHLRAVSTEDATAFAERENTFFMETSALES 160
           + L ELR     N++I  +L  G K  +      +   +    F      F++    L++
Sbjct: 142 QALLELRPA--KNVLIDGVLGSG-KTWVALDVCLSYKVQCKMDF----KIFWLN---LKN 191

Query: 161 MNVENAFTEVLTQIYRVVSRKALEIGDDPAALPKGQTINVGTK----------------- 203
            N      E+L ++   +        D  + +     I+                     
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK--LRIHSIQAELRRLLKSKPYENCLLV 249

Query: 204 -DDVSAVK-----KVGC 214
             +V   K      + C
Sbjct: 250 LLNVQNAKAWNAFNLSC 266

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 49.3 bits (117), Expect = 2e-07
 Identities = 27/179 (15%), Positives = 61/179 (34%), Gaps = 26/179 (14%)

Query: 16  VVLIGDSGVGKSNLLSRFTRNEFSLESK---STIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
           V+L+G    GKS++      N   L++    ST         +     ++   + +  GQ
Sbjct: 2   VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPS-----LEHFSTLIDLAVMELPGQ 56

Query: 73  ERYRA---ITSAYYRGAVGALLVYDVTRHVT--FENVERWLKELRDHTDSNIVIMLVGNK 127
             Y      +   ++     + V D          N+   ++      + +I I ++ +K
Sbjct: 57  LNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHK 115

Query: 128 ADL----------RHLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVLTQIY 175
            D           R +   + E+            F  TS  +  ++  AF+ ++ ++ 
Sbjct: 116 VDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFDH-SIYEAFSRIVQKLI 173

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 47.3 bits (113), Expect = 5e-07
 Identities = 30/150 (20%), Positives = 55/150 (36%), Gaps = 9/150 (6%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+V +G    GK+ LL     +    +   T+     +  +      +    +D  G  +
Sbjct: 27  KLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLH--PTSEELTI--AGMTFTTFDLGGHIQ 81

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHL 133
            R +   Y     G + + D   H      +  L  L      +N+ I+++GNK D    
Sbjct: 82  ARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE- 140

Query: 134 RAVSTED-ATAFAERENTFFMETSALESMN 162
            A+S E     F     T    + +L+ +N
Sbjct: 141 -AISEERLREMFGLYGQTTGKGSVSLKELN 169

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 47.4 bits (113), Expect = 6e-07
 Identities = 24/143 (16%), Positives = 48/143 (33%), Gaps = 17/143 (11%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
            +++ G    GK++LL+  T +     +  +     +              + D  G  +
Sbjct: 50  SIIIAGPQNSGKTSLLTLLTTDSVR-PTVVSQE-PLSAADY----DGSGVTLVDFPGHVK 103

Query: 75  YRAITSAYYRGAVGAL--LVYDV---TRHVTFENVERWLKELRDHTDS----NIVIMLVG 125
            R   S Y +     +  L++ V              +L ++   T+S     I I++  
Sbjct: 104 LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC 163

Query: 126 NKADLRHLRAVSTEDATAFAERE 148
           NK++L    A          E E
Sbjct: 164 NKSELFT--ARPPSKIKDALESE 184

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 48.0 bits (114), Expect = 7e-07
 Identities = 26/132 (19%), Positives = 55/132 (41%), Gaps = 8/132 (6%)

Query: 10  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDT 69
                +++++G    GK+ +L +    E    +  TIG  F   ++    K +   +WD 
Sbjct: 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEY--KNISFTVWDV 216

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKA 128
            GQ++ R +   Y++   G + V D             L  +    +  + V+++  NK 
Sbjct: 217 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQ 276

Query: 129 DLRHLRAVSTED 140
           DL +  A++  +
Sbjct: 277 DLPN--AMNAAE 286

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 46.8 bits (112), Expect = 7e-07
 Identities = 24/127 (18%), Positives = 50/127 (39%), Gaps = 8/127 (6%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K++ +G    GK+ LL     +  +   + T      +  +      +K   +D  G  +
Sbjct: 25  KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWH--PTSEELAI--GNIKFTTFDLGGHIQ 79

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHL 133
            R +   Y+    G + + D      F+     L  L +  +  ++  +++GNK D  + 
Sbjct: 80  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN- 138

Query: 134 RAVSTED 140
            AVS  +
Sbjct: 139 -AVSEAE 144

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 25/143 (17%), Positives = 48/143 (33%), Gaps = 19/143 (13%)

Query: 16  VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIG-VEFATRSIRCDDKIVKAQIWDTAGQER 74
           +++ G    GK++LL+  T +     +  +   +  A              + D  G  +
Sbjct: 15  IIIAGPQNSGKTSLLTLLTTDSVR-PTVVSQEPLSAADY------DGSGVTLVDFPGHVK 67

Query: 75  YRAITSAYYRGAVGAL--LVYDV-------TRHVTFENVERWLKELRDHTDSNIVIMLVG 125
            R   S Y +     +  L++ V           T E +   L       ++ I I++  
Sbjct: 68  LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC 127

Query: 126 NKADLRHLRAVSTEDATAFAERE 148
           NK++L    A          E E
Sbjct: 128 NKSELFT--ARPPSKIKDALESE 148

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 42.8 bits (100), Expect = 4e-05
 Identities = 19/125 (15%), Positives = 31/125 (24%), Gaps = 9/125 (7%)

Query: 11  DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQI--WD 68
             +  V + G++G GKS+ ++         E  +  GV   T             +  WD
Sbjct: 67  SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWD 126

Query: 69  TAGQERYRAITSAYYRGAV---GALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVG 125
             G          Y            +         +N     K +            V 
Sbjct: 127 LPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFK-KNDIDIAKAISMM---KKEFYFVR 182

Query: 126 NKADL 130
            K D 
Sbjct: 183 TKVDS 187

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 42/185 (22%), Positives = 77/185 (41%), Gaps = 28/185 (15%)

Query: 16  VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSI---RCDDKIVKAQIWDTAG- 71
           VV+ G   VGKS LL   T  +  + S       F TR I   + +D   + QI DT G 
Sbjct: 170 VVIAGHPNVGKSTLLKALTTAKPEIASY-----PFTTRGINVGQFEDGYFRYQIIDTPGL 224

Query: 72  -----QER----YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD--SNIV 120
                 ER     +AI +  Y G +  + ++D + H  F  +E  +    +      ++ 
Sbjct: 225 LDRPISERNEIEKQAILALRYLGNL-IIYIFDPSEHCGFP-LEEQIHLFEEVHGEFKDLP 282

Query: 121 IMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSR 180
            ++V NK D+      + +    F + +    ++ SAL+   ++     V  +I + +  
Sbjct: 283 FLVVINKIDV--ADEENIKRLEKFVKEKGLNPIKISALKGTGID----LVKEEIIKTLRP 336

Query: 181 KALEI 185
            A ++
Sbjct: 337 LAEKV 341

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	217
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	100.0
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	100.0
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	100.0
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	100.0
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	100.0
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	100.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.98
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.98
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.98
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.98
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.97
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.97
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.97
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.97
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.97
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.97
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.97
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.97
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.97
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.97
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.97
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.96
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.96
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.96
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.96
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.96
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.96
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.96
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.96
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.96
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.93
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.95
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.95
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.95
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.95
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.95
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.95
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.94
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.94
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.94
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.94
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.94
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.94
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.94
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.94
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.93
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.93
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.93
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.93
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.93
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.93
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.93
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.92
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.92
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.91
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.91
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.91
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.91
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.91
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.9
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.9
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.89
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.89
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.89
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.88
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.88
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.88
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.88
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.88
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.87
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.87
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.87
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.87
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.87
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.87
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.87
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.87
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.86
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.86
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.86
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.86
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.85
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.85
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.85
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.85
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.85
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.84
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.84
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.84
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.84
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.83
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.83
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.83
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.83
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.83
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.82
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.82
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.81
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.81
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.81
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.81
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.8
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.8
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.79
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.79
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.78
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.78
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.78
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.77
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.77
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.76
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.76
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.75
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.75
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.74
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.74
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.73
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.73
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.73
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.72
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.71
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.69
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.69
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.67
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.65
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.64
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.64
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.63
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.62
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.6
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.58
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.58
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.57
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.55
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.52
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.52
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.51
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.43
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.41
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.39
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.35
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.25
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.12
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.06
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.99
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.98
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.97
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.97
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.86
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.86
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.81
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.76
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.7
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.67
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.57
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.4
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.39
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.32
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.24
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.24
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.21
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.16
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.03
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.96
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.95
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.87
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.62
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.53
2xxa_A	433	Signal recognition particle protein; protein trans	97.47
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.43
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.38
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.37
3cwq_A	209	Para family chromosome partitioning protein; alpha	97.37
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.31
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.28
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.28
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.27
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.23
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.22
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.21
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.21
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.17
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.16
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.15
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.13
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.1
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.09
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.07
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.06
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.05
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.04
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.04
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.02
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.02
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.01
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.01
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.0
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.0
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.99
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.99
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.99
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.99
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.96
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.95
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.95
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.95
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.95
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.95
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.93
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.92
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.92
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.92
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.91
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.91
1g6h_A	257	High-affinity branched-chain amino acid transport	96.91
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.91
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.9
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.9
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.9
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.9
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.89
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.89
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.88
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.88
3end_A	307	Light-independent protochlorophyllide reductase ir	96.88
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.88
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.88
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.87
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.87
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.87
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.86
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.86
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.86
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.85
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.85
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.84
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.83
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.83
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.83
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.82
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.81
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.81
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.81
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.81
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.81
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.8
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.8
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.79
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.78
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.78
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.78
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.77
3co5_A	143	Putative two-component system transcriptional RES	96.76
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.76
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.76
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.75
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.73
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.72
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.72
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.71
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.7
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.7
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.7
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.69
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.69
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.69
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.68
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.68
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.68
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.68
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.67
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.65
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.65
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.65
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.64
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.64
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.63
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.62
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.61
1via_A	175	Shikimate kinase; structural genomics, transferase	96.61
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.61
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.61
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.6
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.6
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.59
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.59
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.59
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.58
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.57
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.57
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.57
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.55
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.55
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.55
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.54
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.54
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.54
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.54
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.53
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.53
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.52
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.52
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.51
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.51
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.5
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.5
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.5
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.49
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.49
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.48
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.46
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.45
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.45
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.45
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.44
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.43
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.43
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.42
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.41
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.38
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.38
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	96.37
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.37
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.36
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.36
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.36
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.35
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.34
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.34
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.34
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.34
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.34
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.33
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.33
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.32
2og2_A	359	Putative signal recognition particle receptor; nuc	96.26
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.26
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	96.25
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.25
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.23
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.22
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.2
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.2
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.2
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	96.19
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.19
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.19
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.15
3bos_A	242	Putative DNA replication factor; P-loop containing	96.14
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.14
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.14
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.13
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.13
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.13
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.12
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.11
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.1
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.09
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.02
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.0
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	95.94
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	95.93
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.92
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	95.88
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.88
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.85
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.85
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	95.85
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.84
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.84
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	95.83
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.81
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.81
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.8
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.79
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.79
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.77
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.76
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.73
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.73
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.73
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	95.71
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	95.69
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.66
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.64
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.63
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.62
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.61
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	95.6
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.6
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.57
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.55
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.53
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.52
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.51
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.5
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	95.49
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.49
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.45
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.45
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.45
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.45
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.44
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.43
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.41
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.41
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.41
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.4
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.38
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.38
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.37
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.32
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.3
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.29
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.27
3uc9_A	233	Increased recombination centers protein 6; rossman	95.24
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	95.24
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.23
2qgz_A	308	Helicase loader, putative primosome component; str	95.18
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.17
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.12
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	95.11
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.09
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	95.09
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.07
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.07
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.06
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	95.05
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.05
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	95.03
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.03

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=4.2e-44  Score=267.53  Aligned_cols=179  Identities=35%  Similarity=0.631  Sum_probs=147.1

Q ss_pred             CCCCCCCCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhh
Q 027856            1 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITS   80 (217)
Q Consensus         1 ~~~~~~~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~   80 (217)
                      |+.......+...+||+|+|++|||||||+++|+.+.|...+.+|.+.++....+.+++..+.+.||||+|+++|..++.
T Consensus         1 ms~~~~~~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~   80 (216)
T 4dkx_A            1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIP   80 (216)
T ss_dssp             ------------CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHH
T ss_pred             CCCCCCCCCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHH
Confidence            34334434455679999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCC
Q 027856           81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALES  160 (217)
Q Consensus        81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  160 (217)
                      .+++.++++++|||++++.|++.+..|+..+.....++.|+++|+||+|+.+.+.++.+++++++..+++.|+++||++|
T Consensus        81 ~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg  160 (216)
T 4dkx_A           81 SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAG  160 (216)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTT
T ss_pred             HHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCC
Confidence            99999999999999999999999999999998888789999999999999988899999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHh
Q 027856          161 MNVENAFTEVLTQIYRVVS  179 (217)
Q Consensus       161 ~~i~~~~~~i~~~~~~~~~  179 (217)
                      .|++++|+.|++.+.....
T Consensus       161 ~nV~e~F~~i~~~i~~~~~  179 (216)
T 4dkx_A          161 YNVKQLFRRVAAALPGMES  179 (216)
T ss_dssp             BSHHHHHHHHHHHC-----
T ss_pred             cCHHHHHHHHHHHHHhhhc
Confidence            9999999999988875543

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-38  Score=239.53  Aligned_cols=215  Identities=57%  Similarity=0.947  Sum_probs=151.0

Q ss_pred             CCCCCCCCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhh
Q 027856            1 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITS   80 (217)
Q Consensus         1 ~~~~~~~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~   80 (217)
                      |.+.......+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+..++.
T Consensus         1 Ms~~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   80 (223)
T 3cpj_B            1 MSSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITS   80 (223)
T ss_dssp             ---------CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCG
T ss_pred             CCccccCCCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHH
Confidence            44444445567889999999999999999999999999888888888888888888899889999999999999999999


Q ss_pred             hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCC
Q 027856           81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALES  160 (217)
Q Consensus        81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  160 (217)
                      .+++.+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...++.++++||++|
T Consensus        81 ~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  160 (223)
T 3cpj_B           81 AYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNS  160 (223)
T ss_dssp             GGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-C
T ss_pred             HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence            99999999999999999999999999999998876668999999999999877778888999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhhhhhccCC------CC-CCCCCCceee-ecccCccccccccCCc
Q 027856          161 MNVENAFTEVLTQIYRVVSRKALEIGD------DP-AALPKGQTIN-VGTKDDVSAVKKVGCC  215 (217)
Q Consensus       161 ~~i~~~~~~i~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~  215 (217)
                      .|++++|++|++.+.+.....+....+      .+ ...+.+.++. +.++...+++++++||
T Consensus       161 ~gi~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc  223 (223)
T 3cpj_B          161 ENVDKAFEELINTIYQKVSKHQMDLGDSSANGNANGASAPNGPTISLTPTPNENKKANGNNCC  223 (223)
T ss_dssp             CCHHHHHHHHHHHHTTCC------------------------CCBCC----------------
T ss_pred             CCHHHHHHHHHHHHHHHhhhcccCchhcccccccccccccCCCcccccccccccccccCCCCC
Confidence            999999999999999877766665522      11 1223344555 3333333345678897

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=1e-36  Score=226.45  Aligned_cols=176  Identities=49%  Similarity=0.824  Sum_probs=161.3

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      ..+..++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (206)
T 2bcg_Y            4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG   83 (206)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence            35678999999999999999999999999988888898888888888889988999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 027856           89 ALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFT  168 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  168 (217)
                      +++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+
T Consensus        84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  163 (206)
T 2bcg_Y           84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL  163 (206)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999999887767899999999999988777888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhc
Q 027856          169 EVLTQIYRVVSRKALE  184 (217)
Q Consensus       169 ~i~~~~~~~~~~~~~~  184 (217)
                      +|.+.+.+...+.+..
T Consensus       164 ~l~~~i~~~~~~~~~~  179 (206)
T 2bcg_Y          164 TMARQIKESMSQQNLN  179 (206)
T ss_dssp             HHHHHHHHHCCHHHHH
T ss_pred             HHHHHHHHHHhhcccc
Confidence            9999998876655443

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=2.3e-36  Score=224.22  Aligned_cols=172  Identities=33%  Similarity=0.498  Sum_probs=151.7

Q ss_pred             CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCc
Q 027856            8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAV   87 (217)
Q Consensus         8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   87 (217)
                      .+....++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..++..+|
T Consensus         9 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~   87 (206)
T 2bov_A            9 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE   87 (206)
T ss_dssp             --CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred             CCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCC
Confidence            3456689999999999999999999999998877777776554 455677888899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856           88 GALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA  166 (217)
Q Consensus        88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  166 (217)
                      ++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++
T Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  167 (206)
T 2bov_A           88 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKV  167 (206)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Confidence            99999999999999999999998877653 57999999999999887778889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 027856          167 FTEVLTQIYRVVSR  180 (217)
Q Consensus       167 ~~~i~~~~~~~~~~  180 (217)
                      |++|++.+.+....
T Consensus       168 ~~~l~~~i~~~~~~  181 (206)
T 2bov_A          168 FFDLMREIRARKME  181 (206)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccc
Confidence            99999999876543

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=9.5e-35  Score=215.16  Aligned_cols=173  Identities=43%  Similarity=0.769  Sum_probs=158.3

Q ss_pred             CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCc
Q 027856            8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAV   87 (217)
Q Consensus         8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   87 (217)
                      .+.+..++|+++|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|
T Consensus        21 ~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d  100 (201)
T 2ew1_A           21 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSAN  100 (201)
T ss_dssp             -CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCS
T ss_pred             cccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCC
Confidence            34567899999999999999999999999998888899999988888889999899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Q 027856           88 GALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAF  167 (217)
Q Consensus        88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  167 (217)
                      ++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.++...++.++++||++|.|++++|
T Consensus       101 ~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~  180 (201)
T 2ew1_A          101 ALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLF  180 (201)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999988776789999999999998777888889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 027856          168 TEVLTQIYRVVSR  180 (217)
Q Consensus       168 ~~i~~~~~~~~~~  180 (217)
                      ++|++.+.+...+
T Consensus       181 ~~l~~~i~~~~~~  193 (201)
T 2ew1_A          181 LDLACRLISEARQ  193 (201)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999876543

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=1.9e-34  Score=210.58  Aligned_cols=175  Identities=47%  Similarity=0.789  Sum_probs=159.9

Q ss_pred             CCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCC
Q 027856            7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGA   86 (217)
Q Consensus         7 ~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   86 (217)
                      .+..+..++|+++|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++..+
T Consensus         4 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   83 (186)
T 2bme_A            4 SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGA   83 (186)
T ss_dssp             CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTC
T ss_pred             ccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcC
Confidence            34557789999999999999999999999999888888888888888888899889999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856           87 VGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA  166 (217)
Q Consensus        87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  166 (217)
                      |++++|+|++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...++.++++||++|.|++++
T Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  163 (186)
T 2bme_A           84 AGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEA  163 (186)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHH
Confidence            99999999999999999999999988776678999999999999877778888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q 027856          167 FTEVLTQIYRVVSRK  181 (217)
Q Consensus       167 ~~~i~~~~~~~~~~~  181 (217)
                      |+++.+.+.+.....
T Consensus       164 ~~~l~~~~~~~~~~~  178 (186)
T 2bme_A          164 FVQCARKILNKIESG  178 (186)
T ss_dssp             HHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHhhhc
Confidence            999999998776543

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=1.8e-34  Score=211.95  Aligned_cols=174  Identities=52%  Similarity=0.840  Sum_probs=155.0

Q ss_pred             CCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCC
Q 027856            7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGA   86 (217)
Q Consensus         7 ~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   86 (217)
                      .......++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+
T Consensus        15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   94 (191)
T 2a5j_A           15 VPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGA   94 (191)
T ss_dssp             CCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTC
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccC
Confidence            34456789999999999999999999999998888878888888888888899889999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856           87 VGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA  166 (217)
Q Consensus        87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  166 (217)
                      |++++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...++.++++||++|.|++++
T Consensus        95 d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  174 (191)
T 2a5j_A           95 AGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEA  174 (191)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            99999999999999999999999998876678999999999999877778889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 027856          167 FTEVLTQIYRVVSR  180 (217)
Q Consensus       167 ~~~i~~~~~~~~~~  180 (217)
                      |++|++.+.+...+
T Consensus       175 ~~~l~~~i~~~~~~  188 (191)
T 2a5j_A          175 FINTAKEIYRKIQQ  188 (191)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999876543

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=8.1e-35  Score=216.09  Aligned_cols=173  Identities=40%  Similarity=0.697  Sum_probs=152.7

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      ....++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC   84 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence            45679999999999999999999999998888888988888888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCccCCCHHHHHHHHH-HcCCcEEEEecCCCCCHH
Q 027856           90 LLVYDVTRHVTFENVERWLKELRDHTD----SNIVIMLVGNKADLRHLRAVSTEDATAFAE-RENTFFMETSALESMNVE  164 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~  164 (217)
                      ++|+|++++.+++.+..|+..+.....    .+.|+++|+||+|+.+ +.+..+++..++. ..+++++++||++|.|++
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  163 (207)
T 1vg8_A           85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVE  163 (207)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcc-cccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence            999999999999999899988876543    4789999999999974 5667788888887 567889999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhh
Q 027856          165 NAFTEVLTQIYRVVSRKAL  183 (217)
Q Consensus       165 ~~~~~i~~~~~~~~~~~~~  183 (217)
                      ++|++|.+.+.+.....+.
T Consensus       164 ~l~~~l~~~~~~~~~~~~~  182 (207)
T 1vg8_A          164 QAFQTIARNALKQETEVEL  182 (207)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccc
Confidence            9999999999887765543

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=1.2e-34  Score=214.71  Aligned_cols=172  Identities=48%  Similarity=0.790  Sum_probs=147.8

Q ss_pred             CCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCC
Q 027856            7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGA   86 (217)
Q Consensus         7 ~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   86 (217)
                      +.+.+..++|+|+|.+|+|||||+++|++..+...+.+|.+.++....+.+++..+.+.+|||||++.+...+..+++.+
T Consensus        23 ~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~  102 (201)
T 2hup_A           23 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSA  102 (201)
T ss_dssp             ---CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTC
T ss_pred             ccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhC
Confidence            34567789999999999999999999999998888888888888888888899889999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCC-cEEEEecCCCCCHHH
Q 027856           87 VGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENT-FFMETSALESMNVEN  165 (217)
Q Consensus        87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~  165 (217)
                      |++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...++ .++++||++|.|+++
T Consensus       103 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  182 (201)
T 2hup_A          103 NGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEE  182 (201)
T ss_dssp             SEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHH
Confidence            9999999999999999999999999887667899999999999987777888999999999998 899999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027856          166 AFTEVLTQIYRVV  178 (217)
Q Consensus       166 ~~~~i~~~~~~~~  178 (217)
                      +|++|++.+.+..
T Consensus       183 l~~~l~~~i~~~~  195 (201)
T 2hup_A          183 AFLRVATELIMRH  195 (201)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999887654

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=2e-34  Score=208.96  Aligned_cols=169  Identities=51%  Similarity=0.876  Sum_probs=154.8

Q ss_pred             CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCc
Q 027856            8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAV   87 (217)
Q Consensus         8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   87 (217)
                      ...+..++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus        10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   89 (179)
T 1z0f_A           10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA   89 (179)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred             cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence            34567899999999999999999999999988888888888888888888998899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Q 027856           88 GALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAF  167 (217)
Q Consensus        88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  167 (217)
                      ++++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...++.++++||++|.|++++|
T Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  169 (179)
T 1z0f_A           90 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF  169 (179)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999988776789999999999998777788899999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 027856          168 TEVLTQIYR  176 (217)
Q Consensus       168 ~~i~~~~~~  176 (217)
                      +++++.+.+
T Consensus       170 ~~l~~~i~~  178 (179)
T 1z0f_A          170 LEAAKKIYQ  178 (179)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHHhh
Confidence            999987754

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=6.9e-35  Score=212.47  Aligned_cols=172  Identities=47%  Similarity=0.817  Sum_probs=129.0

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      .+..++|+++|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (183)
T 2fu5_C            5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   84 (183)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence            46789999999999999999999999988877888888888888888899889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 027856           90 LLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTE  169 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  169 (217)
                      ++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|++
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  164 (183)
T 2fu5_C           85 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFT  164 (183)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998876678999999999999877778889999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhh
Q 027856          170 VLTQIYRVVSRK  181 (217)
Q Consensus       170 i~~~~~~~~~~~  181 (217)
                      |.+.+.+...+.
T Consensus       165 l~~~i~~~~~~~  176 (183)
T 2fu5_C          165 LARDIKAKMDKN  176 (183)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcc
Confidence            999998776543

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=4.3e-34  Score=210.36  Aligned_cols=172  Identities=49%  Similarity=0.799  Sum_probs=159.4

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      ..+..++|+++|.+|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus        12 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   91 (196)
T 3tkl_A           12 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   91 (196)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSE
T ss_pred             ccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCE
Confidence            44678999999999999999999999999988888999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 027856           89 ALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFT  168 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  168 (217)
                      +++|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|+
T Consensus        92 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~  171 (196)
T 3tkl_A           92 IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM  171 (196)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999999888777899999999999988888888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 027856          169 EVLTQIYRVVSR  180 (217)
Q Consensus       169 ~i~~~~~~~~~~  180 (217)
                      +|.+.+.+....
T Consensus       172 ~l~~~i~~~~~~  183 (196)
T 3tkl_A          172 TMAAEIKKRMGP  183 (196)
T ss_dssp             HHHHHHHHHC--
T ss_pred             HHHHHHHHHhcc
Confidence            999998876543

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.2e-34  Score=209.67  Aligned_cols=172  Identities=66%  Similarity=1.035  Sum_probs=157.6

Q ss_pred             CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCc
Q 027856            8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAV   87 (217)
Q Consensus         8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   87 (217)
                      +..+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||.+.+...+..++..+|
T Consensus        20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   99 (193)
T 2oil_A           20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAV   99 (193)
T ss_dssp             CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCC
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence            44567899999999999999999999999998888888888888888888888999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Q 027856           88 GALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAF  167 (217)
Q Consensus        88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  167 (217)
                      ++++|+|++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...++.++++||++|.|++++|
T Consensus       100 ~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  179 (193)
T 2oil_A          100 GALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAF  179 (193)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999987766789999999999998777788889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 027856          168 TEVLTQIYRVVS  179 (217)
Q Consensus       168 ~~i~~~~~~~~~  179 (217)
                      ++|.+.+.+...
T Consensus       180 ~~l~~~i~~~~~  191 (193)
T 2oil_A          180 ETVLKEIFAKVS  191 (193)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            999999887654

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=6.1e-34  Score=208.70  Aligned_cols=170  Identities=42%  Similarity=0.738  Sum_probs=155.9

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      ..+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.+|||||++.+...+..++..+|+
T Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   97 (189)
T 2gf9_A           18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMG   97 (189)
T ss_dssp             TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred             ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence            34568999999999999999999999999888888888888888888888888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 027856           89 ALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFT  168 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  168 (217)
                      +++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++++++...++.++++||++|.|++++|+
T Consensus        98 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  177 (189)
T 2gf9_A           98 FLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFE  177 (189)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999999999999887666899999999999987777888889999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027856          169 EVLTQIYRVV  178 (217)
Q Consensus       169 ~i~~~~~~~~  178 (217)
                      +|.+.+.+..
T Consensus       178 ~l~~~i~~~~  187 (189)
T 2gf9_A          178 RLVDVICEKM  187 (189)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999887654

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=7.8e-34  Score=206.20  Aligned_cols=172  Identities=49%  Similarity=0.773  Sum_probs=155.8

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      +.+..++|+++|.+|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..++..+|+
T Consensus         5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   84 (181)
T 3tw8_B            5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG   84 (181)
T ss_dssp             -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence            45678999999999999999999999999888888999999988999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 027856           89 ALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFT  168 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  168 (217)
                      +++|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|+
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  163 (181)
T 3tw8_B           85 VIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFN  163 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            999999999999999999999987765 4799999999999988778888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 027856          169 EVLTQIYRVVSRK  181 (217)
Q Consensus       169 ~i~~~~~~~~~~~  181 (217)
                      +|.+.+.+...+.
T Consensus       164 ~l~~~~~~~~~~~  176 (181)
T 3tw8_B          164 CITELVLRAKKDN  176 (181)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhh
Confidence            9999998877654

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=1.1e-33  Score=209.57  Aligned_cols=172  Identities=40%  Similarity=0.735  Sum_probs=158.0

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      ..+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||.+.+...+..+++.+|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (203)
T 1zbd_A            4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG   83 (203)
T ss_dssp             SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence            45678999999999999999999999999888888888888888888889988999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 027856           89 ALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFT  168 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  168 (217)
                      +++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+
T Consensus        84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  163 (203)
T 1zbd_A           84 FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE  163 (203)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999999999999887666899999999999988777888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 027856          169 EVLTQIYRVVSR  180 (217)
Q Consensus       169 ~i~~~~~~~~~~  180 (217)
                      +|.+.+.+...+
T Consensus       164 ~l~~~i~~~~~~  175 (203)
T 1zbd_A          164 RLVDVICEKMSE  175 (203)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999998876544

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=7.9e-34  Score=206.35  Aligned_cols=169  Identities=43%  Similarity=0.760  Sum_probs=153.4

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      .....++|+++|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus         8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   87 (181)
T 2efe_B            8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   87 (181)
T ss_dssp             --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred             CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence            34667999999999999999999999999888888888888888888889888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 027856           89 ALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFT  168 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  168 (217)
                      +++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+
T Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  167 (181)
T 2efe_B           88 AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFY  167 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence            99999999999999999999999887767899999999999987777888999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 027856          169 EVLTQIYRV  177 (217)
Q Consensus       169 ~i~~~~~~~  177 (217)
                      +|.+.+.+.
T Consensus       168 ~l~~~~~~~  176 (181)
T 2efe_B          168 EIARRLPRV  176 (181)
T ss_dssp             HHHHTCC--
T ss_pred             HHHHHHHhc
Confidence            999876543

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=5.2e-34  Score=211.01  Aligned_cols=172  Identities=47%  Similarity=0.790  Sum_probs=147.4

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      .+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~  101 (200)
T 2o52_A           22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA  101 (200)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence            45689999999999999999999999998888888888888888888899889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 027856           90 LLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTE  169 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  169 (217)
                      |+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...++.++++||++|.|++++|++
T Consensus       102 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~  181 (200)
T 2o52_A          102 LLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLK  181 (200)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999988776678999999999999877778888899999999999999999999999999999


Q ss_pred             HHHHHHHHHhhh
Q 027856          170 VLTQIYRVVSRK  181 (217)
Q Consensus       170 i~~~~~~~~~~~  181 (217)
                      |++.+.+.....
T Consensus       182 l~~~i~~~~~~~  193 (200)
T 2o52_A          182 CARTILNKIDSG  193 (200)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcC
Confidence            999998776543

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=3.7e-34  Score=205.99  Aligned_cols=166  Identities=39%  Similarity=0.680  Sum_probs=145.7

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      .+..++|+++|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            35679999999999999999999999998888888888888888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 027856           90 LLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTE  169 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  169 (217)
                      ++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  162 (170)
T 1z08_A           83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence            99999999999999999999887766568999999999999887788889999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027856          170 VLTQIY  175 (217)
Q Consensus       170 i~~~~~  175 (217)
                      |.+.+.
T Consensus       163 l~~~~~  168 (170)
T 1z08_A          163 LCKRMI  168 (170)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998875

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=1.4e-33  Score=205.59  Aligned_cols=168  Identities=32%  Similarity=0.521  Sum_probs=151.4

Q ss_pred             CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCc
Q 027856            8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAV   87 (217)
Q Consensus         8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   87 (217)
                      ......++|+++|.+|+|||||+++|++..+...+.++.+..+ .....+++..+.+.+|||||++.+...+..+++.+|
T Consensus        13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d   91 (183)
T 3kkq_A           13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGD   91 (183)
T ss_dssp             -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCS
T ss_pred             ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence            4456789999999999999999999999998888888887766 666778898899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecC-CCCCHHH
Q 027856           88 GALLVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSAL-ESMNVEN  165 (217)
Q Consensus        88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~~  165 (217)
                      ++++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++.+++...+++++++||+ +|.|+++
T Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~  171 (183)
T 3kkq_A           92 GFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDK  171 (183)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHH
Confidence            9999999999999999999998886543 3578999999999998878889999999999999999999999 9999999


Q ss_pred             HHHHHHHHHHH
Q 027856          166 AFTEVLTQIYR  176 (217)
Q Consensus       166 ~~~~i~~~~~~  176 (217)
                      +|++|.+.+.+
T Consensus       172 l~~~l~~~i~~  182 (183)
T 3kkq_A          172 TFHDLVRVIRQ  182 (183)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999988764

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=6.3e-34  Score=209.24  Aligned_cols=169  Identities=38%  Similarity=0.728  Sum_probs=147.3

Q ss_pred             CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCc
Q 027856            8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAV   87 (217)
Q Consensus         8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   87 (217)
                      ++.+..++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..++..+|
T Consensus        21 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d  100 (192)
T 2il1_A           21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK  100 (192)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCS
T ss_pred             cccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence            34567899999999999999999999999988888888888888888888998899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHc-CCcEEEEecCCCCCHHHH
Q 027856           88 GALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERE-NTFFMETSALESMNVENA  166 (217)
Q Consensus        88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~  166 (217)
                      ++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++++++... +..++++||++|.|++++
T Consensus       101 ~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  180 (192)
T 2il1_A          101 GIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEI  180 (192)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHH
Confidence            9999999999999999999999998877678999999999999877778888888888874 788999999999999999


Q ss_pred             HHHHHHHHHH
Q 027856          167 FTEVLTQIYR  176 (217)
Q Consensus       167 ~~~i~~~~~~  176 (217)
                      |++|.+.+.+
T Consensus       181 ~~~l~~~i~~  190 (192)
T 2il1_A          181 FLKLVDDILK  190 (192)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=1.7e-33  Score=202.28  Aligned_cols=164  Identities=46%  Similarity=0.770  Sum_probs=151.4

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++|+++|.+|+|||||+++|+++.+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..++..+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence            45799999999999999999999999988888888888888888888988999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856           91 LVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  170 (217)
                      +|+|++++.+++.+..|+..+.....++.|+++|+||+|+.+.+.+..+++.+++...++.++++||++|.|++++|++|
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i  163 (170)
T 1r2q_A           84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI  163 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999988766789999999999998777788888999999999999999999999999999999


Q ss_pred             HHHH
Q 027856          171 LTQI  174 (217)
Q Consensus       171 ~~~~  174 (217)
                      .+.+
T Consensus       164 ~~~~  167 (170)
T 1r2q_A          164 AKKL  167 (170)
T ss_dssp             HHTS
T ss_pred             HHHH
Confidence            8754

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.8e-33  Score=204.33  Aligned_cols=170  Identities=45%  Similarity=0.745  Sum_probs=146.1

Q ss_pred             CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCC-CCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCC
Q 027856            8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGA   86 (217)
Q Consensus         8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   86 (217)
                      +..+..++|+++|.+|+|||||+++|++..+. ..+.++.+.++....+.+++..+.+.+|||||++.+...+..++..+
T Consensus         5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~   84 (180)
T 2g6b_A            5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA   84 (180)
T ss_dssp             CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred             ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence            44577899999999999999999999999885 45678888888887878899889999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856           87 VGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA  166 (217)
Q Consensus        87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  166 (217)
                      |++++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++
T Consensus        85 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  164 (180)
T 2g6b_A           85 HALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLA  164 (180)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence            99999999999999999999999998876678999999999999887778888899999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027856          167 FTEVLTQIYRV  177 (217)
Q Consensus       167 ~~~i~~~~~~~  177 (217)
                      |+++.+.+.+.
T Consensus       165 ~~~l~~~~~~~  175 (180)
T 2g6b_A          165 FTAIAKELKRR  175 (180)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHHHH
Confidence            99999887644

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=2.8e-33  Score=205.44  Aligned_cols=175  Identities=39%  Similarity=0.700  Sum_probs=154.7

Q ss_pred             CCCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeE-EEEEEECCe---------EEEEEEEeCCChhhh
Q 027856            6 ADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFA-TRSIRCDDK---------IVKAQIWDTAGQERY   75 (217)
Q Consensus         6 ~~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~l~Dt~G~~~~   75 (217)
                      +..+.+..++|+|+|.+|+|||||+++|++..+...+.++.+.++. ...+.+++.         .+.+.+|||||++.+
T Consensus         4 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   83 (195)
T 3bc1_A            4 SDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERF   83 (195)
T ss_dssp             --CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGG
T ss_pred             cccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHH
Confidence            3446678899999999999999999999999988888888888777 556666655         789999999999999


Q ss_pred             hhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEE
Q 027856           76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFME  154 (217)
Q Consensus        76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  154 (217)
                      ...+..+++.+|++++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++.+++...++++++
T Consensus        84 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  163 (195)
T 3bc1_A           84 RSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFE  163 (195)
T ss_dssp             HHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEE
T ss_pred             HHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEE
Confidence            99999999999999999999999999999999998877654 58999999999999877778888999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHHHhh
Q 027856          155 TSALESMNVENAFTEVLTQIYRVVSR  180 (217)
Q Consensus       155 ~Sa~~~~~i~~~~~~i~~~~~~~~~~  180 (217)
                      +||++|.|++++|++|.+.+.+...+
T Consensus       164 ~Sa~~~~~v~~l~~~l~~~~~~~~~~  189 (195)
T 3bc1_A          164 TSAANGTNISHAIEMLLDLIMKRMER  189 (195)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999998876543

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=3.1e-33  Score=201.06  Aligned_cols=164  Identities=40%  Similarity=0.759  Sum_probs=152.2

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++|+++|.+|+|||||+++|++..+...+.++.+.++....+.+.+..+.+.+|||||.+.+...+..++..+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i   83 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   83 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence            46799999999999999999999999988888889998888888888998899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856           91 LVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  170 (217)
                      +|+|++++.+++.+..|+..+.....+..|+++|+||+|+.+.+++..+++..++...+++++++||++|.|++++|++|
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i  163 (170)
T 1z0j_A           84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI  163 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence            99999999999999999999988766789999999999998877788888999999999999999999999999999999


Q ss_pred             HHHH
Q 027856          171 LTQI  174 (217)
Q Consensus       171 ~~~~  174 (217)
                      .+.+
T Consensus       164 ~~~i  167 (170)
T 1z0j_A          164 SRRI  167 (170)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            8765

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.2e-34  Score=212.78  Aligned_cols=170  Identities=41%  Similarity=0.746  Sum_probs=157.1

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      ..+..+||+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus        19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   98 (191)
T 3dz8_A           19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMG   98 (191)
T ss_dssp             EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCE
T ss_pred             ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCE
Confidence            34578999999999999999999999999888888888888888888888888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 027856           89 ALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFT  168 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  168 (217)
                      +++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...++.++++||++|.|++++|+
T Consensus        99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  178 (191)
T 3dz8_A           99 FILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFE  178 (191)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999999999999887767899999999999988778889999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027856          169 EVLTQIYRVV  178 (217)
Q Consensus       169 ~i~~~~~~~~  178 (217)
                      +|++.+.+..
T Consensus       179 ~l~~~i~~~~  188 (191)
T 3dz8_A          179 RLVDAICDKM  188 (191)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhc
Confidence            9999887654

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=8.9e-34  Score=203.89  Aligned_cols=165  Identities=44%  Similarity=0.765  Sum_probs=144.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..++|+++|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            46899999999999999999999999888888888888888888888888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 027856           92 VYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~  171 (217)
                      |+|++++.+++.+..|+..+......+.|+++|+||+|+. .+....+++..++...+++++++||++|.|++++|++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  160 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA  160 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT-TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC-cCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999999999988776789999999999994 356778888999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027856          172 TQIYRV  177 (217)
Q Consensus       172 ~~~~~~  177 (217)
                      +.+.+.
T Consensus       161 ~~~~~~  166 (170)
T 1g16_A          161 KLIQEK  166 (170)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            988754

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=1.3e-33  Score=211.31  Aligned_cols=173  Identities=40%  Similarity=0.714  Sum_probs=152.9

Q ss_pred             CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCe----------EEEEEEEeCCChhhhhh
Q 027856            8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK----------IVKAQIWDTAGQERYRA   77 (217)
Q Consensus         8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~Dt~G~~~~~~   77 (217)
                      ...+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++.          .+.+.||||||++.+..
T Consensus        20 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~   99 (217)
T 2f7s_A           20 GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRS   99 (217)
T ss_dssp             -CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHH
T ss_pred             CCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHh
Confidence            34567899999999999999999999999887777788887777777777665          78999999999999999


Q ss_pred             hhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEe
Q 027856           78 ITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETS  156 (217)
Q Consensus        78 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S  156 (217)
                      .+..++..+|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++.+++...++.++++|
T Consensus       100 ~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S  179 (217)
T 2f7s_A          100 LTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETS  179 (217)
T ss_dssp             HHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEB
T ss_pred             HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEE
Confidence            999999999999999999999999999999888766543 5799999999999987777888999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHhh
Q 027856          157 ALESMNVENAFTEVLTQIYRVVSR  180 (217)
Q Consensus       157 a~~~~~i~~~~~~i~~~~~~~~~~  180 (217)
                      |++|.|++++|++|.+.+.+...+
T Consensus       180 a~~g~gi~~l~~~l~~~i~~~~~~  203 (217)
T 2f7s_A          180 AATGQNVEKAVETLLDLIMKRMEQ  203 (217)
T ss_dssp             TTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhhc
Confidence            999999999999999998876544

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.3e-33  Score=207.61  Aligned_cols=168  Identities=40%  Similarity=0.743  Sum_probs=152.9

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      ..+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++..+|+
T Consensus        19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   98 (192)
T 2fg5_A           19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAA   98 (192)
T ss_dssp             --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred             ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCE
Confidence            44678999999999999999999999999887888899988888888888888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 027856           89 ALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFT  168 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  168 (217)
                      +++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|+
T Consensus        99 iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  178 (192)
T 2fg5_A           99 AVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQ  178 (192)
T ss_dssp             EEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence            99999999999999999999999887767899999999999987677888999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027856          169 EVLTQIYR  176 (217)
Q Consensus       169 ~i~~~~~~  176 (217)
                      +|.+.+.+
T Consensus       179 ~l~~~i~~  186 (192)
T 2fg5_A          179 GISRQIPP  186 (192)
T ss_dssp             HHHHTCC-
T ss_pred             HHHHHHHh
Confidence            99876643

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=2.5e-33  Score=201.46  Aligned_cols=163  Identities=40%  Similarity=0.703  Sum_probs=149.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..++|+++|++|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            46899999999999999999999999888888898888888888889989999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCc---cCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 027856           92 VYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL---RAVSTEDATAFAERENTFFMETSALESMNVENAFT  168 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  168 (217)
                      |+|++++.+++.+..|+..+......+.|+++|+||+|+...   +.+..++...++...++.++++||++|.|++++|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999999998877678999999999999765   56788888899999999999999999999999999


Q ss_pred             HHHHHH
Q 027856          169 EVLTQI  174 (217)
Q Consensus       169 ~i~~~~  174 (217)
                      +|.+.+
T Consensus       162 ~l~~~i  167 (170)
T 1ek0_A          162 GIGEKI  167 (170)
T ss_dssp             HHHTTS
T ss_pred             HHHHHH
Confidence            998654

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=3e-33  Score=202.10  Aligned_cols=169  Identities=30%  Similarity=0.389  Sum_probs=137.8

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhh--hhhhhhhhhcCCcE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER--YRAITSAYYRGAVG   88 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~~~~~~~~~d~   88 (217)
                      ...++|+++|++|+|||||+++|++..+...+ ++.+.+.....+.+++..+.+.+|||||++.  +..+...+++.+|+
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~   80 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA   80 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence            35699999999999999999999998876655 4566677777788899889999999999887  56677788899999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Q 027856           89 ALLVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAF  167 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  167 (217)
                      +++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  160 (175)
T 2nzj_A           81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF  160 (175)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence            999999999999999999998887653 3479999999999998877788888888998899999999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 027856          168 TEVLTQIYRVVSR  180 (217)
Q Consensus       168 ~~i~~~~~~~~~~  180 (217)
                      ++|.+.+.+....
T Consensus       161 ~~l~~~~~~~~~~  173 (175)
T 2nzj_A          161 EGVVRQLRLRRRD  173 (175)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHhhcc
Confidence            9999998766543

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=6.1e-33  Score=202.91  Aligned_cols=169  Identities=31%  Similarity=0.494  Sum_probs=146.4

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++|+++|.+|+|||||+++|++..+...+.++.+ +.....+.+++..+.+.+|||||++.+...+..++..+|+++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   80 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   80 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            4579999999999999999999999998777766664 444566678898899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 027856           91 LVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTE  169 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  169 (217)
                      +|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.. .....+++..++...+++++++||++|.|++++|++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  159 (189)
T 4dsu_A           81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT  159 (189)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            9999999999999999998887754 35799999999999975 566788899999999999999999999999999999


Q ss_pred             HHHHHHHHHhhh
Q 027856          170 VLTQIYRVVSRK  181 (217)
Q Consensus       170 i~~~~~~~~~~~  181 (217)
                      |.+.+.+...+.
T Consensus       160 l~~~~~~~~~~~  171 (189)
T 4dsu_A          160 LVREIRKHKEKM  171 (189)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhc
Confidence            999998776553

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=1.6e-33  Score=202.20  Aligned_cols=165  Identities=36%  Similarity=0.620  Sum_probs=151.0

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      +..++|+++|++|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..++..+|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            45799999999999999999999999988888888888888888888998899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856           91 LVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  170 (217)
                      +|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|++|
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  161 (168)
T 1z2a_A           83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL  161 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence            9999999999999988999887765 589999999999998777788889999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027856          171 LTQIYR  176 (217)
Q Consensus       171 ~~~~~~  176 (217)
                      .+.+.+
T Consensus       162 ~~~~~~  167 (168)
T 1z2a_A          162 AEKHLQ  167 (168)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            987753

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=6e-33  Score=206.86  Aligned_cols=172  Identities=43%  Similarity=0.764  Sum_probs=152.9

Q ss_pred             CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCc
Q 027856            8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAV   87 (217)
Q Consensus         8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   87 (217)
                      .+....++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++..+|
T Consensus        15 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   94 (213)
T 3cph_A           15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAM   94 (213)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCS
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence            34566899999999999999999999999988888888888888888888998899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Q 027856           88 GALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAF  167 (217)
Q Consensus        88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  167 (217)
                      ++++|||++++.+++.+..|+..+......+.|+++|+||+|+. .+.+..+++..++...+++++++||++|.|++++|
T Consensus        95 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  173 (213)
T 3cph_A           95 GIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIF  173 (213)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS-SCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999988776689999999999994 35677888888999899999999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 027856          168 TEVLTQIYRVVSR  180 (217)
Q Consensus       168 ~~i~~~~~~~~~~  180 (217)
                      ++|.+.+.+....
T Consensus       174 ~~l~~~~~~~~~~  186 (213)
T 3cph_A          174 FTLAKLIQEKIDS  186 (213)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhh
Confidence            9999998876643

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=4.5e-33  Score=202.16  Aligned_cols=170  Identities=29%  Similarity=0.488  Sum_probs=151.0

Q ss_pred             CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCc
Q 027856            8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAV   87 (217)
Q Consensus         8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   87 (217)
                      .+....++|+++|.+|+|||||+++|++..+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..++..+|
T Consensus         4 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d   82 (181)
T 2fn4_A            4 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGH   82 (181)
T ss_dssp             CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCS
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCC
Confidence            34567899999999999999999999999888888788776665 56677888899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856           88 GALLVYDVTRHVTFENVERWLKELRD-HTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA  166 (217)
Q Consensus        88 ~ii~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  166 (217)
                      ++++|||++++.++..+..|+..+.. ....+.|+++|+||+|+.+.+.+..+++..++...++.++++||++|.|++++
T Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  162 (181)
T 2fn4_A           83 GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEA  162 (181)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Confidence            99999999999999999999888844 33458999999999999887788888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027856          167 FTEVLTQIYRVV  178 (217)
Q Consensus       167 ~~~i~~~~~~~~  178 (217)
                      |++|.+.+.+..
T Consensus       163 ~~~l~~~~~~~~  174 (181)
T 2fn4_A          163 FEQLVRAVRKYQ  174 (181)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhh
Confidence            999999887654

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=2e-33  Score=203.69  Aligned_cols=165  Identities=38%  Similarity=0.703  Sum_probs=152.0

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++|+++|.+|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..++..+|+++
T Consensus        12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   91 (179)
T 2y8e_A           12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV   91 (179)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            45699999999999999999999999988888889888888888888998899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856           91 LVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  170 (217)
                      +|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++|
T Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  171 (179)
T 2y8e_A           92 VVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV  171 (179)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999887766689999999999998777788888999999999999999999999999999999


Q ss_pred             HHHHH
Q 027856          171 LTQIY  175 (217)
Q Consensus       171 ~~~~~  175 (217)
                      .+.+.
T Consensus       172 ~~~~~  176 (179)
T 2y8e_A          172 AAALP  176 (179)
T ss_dssp             HHTCC
T ss_pred             HHHHh
Confidence            87654

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=2.8e-33  Score=203.62  Aligned_cols=168  Identities=33%  Similarity=0.435  Sum_probs=150.1

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      ....++|+++|.+|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus         3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   81 (181)
T 3t5g_A            3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY   81 (181)
T ss_dssp             CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence            34679999999999999999999999988888888887777 66777899989999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 027856           90 LLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFT  168 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  168 (217)
                      ++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  161 (181)
T 3t5g_A           82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR  161 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Confidence            999999999999999999988866543 5789999999999988788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027856          169 EVLTQIYRVV  178 (217)
Q Consensus       169 ~i~~~~~~~~  178 (217)
                      ++++.+.+..
T Consensus       162 ~l~~~~~~~~  171 (181)
T 3t5g_A          162 RIILEAEKMD  171 (181)
T ss_dssp             HHHHHHHTC-
T ss_pred             HHHHHHHHhc
Confidence            9999887554

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=1.1e-32  Score=199.58  Aligned_cols=167  Identities=40%  Similarity=0.704  Sum_probs=147.0

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      +....++|+++|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus         3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   82 (177)
T 1wms_A            3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC   82 (177)
T ss_dssp             CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred             CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence            34678999999999999999999999999888888888888888888889988999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCccCCCHHHHHHHHH-HcCCcEEEEecCCCCCH
Q 027856           89 ALLVYDVTRHVTFENVERWLKELRDHTD----SNIVIMLVGNKADLRHLRAVSTEDATAFAE-RENTFFMETSALESMNV  163 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i  163 (217)
                      +++|+|++++.+++.+..|+..+.....    .+.|+++|+||+|+. .+.+..+++.+++. ..+.+++++||++|.|+
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  161 (177)
T 1wms_A           83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV  161 (177)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence            9999999999999999999988876553    578999999999997 35677888888888 56788999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027856          164 ENAFTEVLTQIYR  176 (217)
Q Consensus       164 ~~~~~~i~~~~~~  176 (217)
                      +++|+++++.+.+
T Consensus       162 ~~l~~~l~~~~~~  174 (177)
T 1wms_A          162 AAAFEEAVRRVLA  174 (177)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988764

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=1.7e-33  Score=207.45  Aligned_cols=169  Identities=29%  Similarity=0.345  Sum_probs=144.1

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhh-hhhhhhcCCc
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRA-ITSAYYRGAV   87 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d   87 (217)
                      +....++|+++|.+|||||||+++|++......+.++.+.+.....+.+++..+.+.+|||+|++.+.. ++..++..+|
T Consensus        19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d   98 (195)
T 3cbq_A           19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD   98 (195)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence            345689999999999999999999987655444445556666667778899999999999999987764 7778899999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856           88 GALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA  166 (217)
Q Consensus        88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  166 (217)
                      ++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...++.++++||++|.|++++
T Consensus        99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~l  178 (195)
T 3cbq_A           99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL  178 (195)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHH
Confidence            99999999999999999999998876543 47999999999999877778889999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027856          167 FTEVLTQIYRV  177 (217)
Q Consensus       167 ~~~i~~~~~~~  177 (217)
                      |+++++.+.+.
T Consensus       179 f~~l~~~i~~~  189 (195)
T 3cbq_A          179 FEGAVRQIRLR  189 (195)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            99999887643

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=6e-33  Score=203.38  Aligned_cols=165  Identities=38%  Similarity=0.670  Sum_probs=148.0

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhh-hhhhhhhcCCcEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYR-AITSAYYRGAVGA   89 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~d~i   89 (217)
                      ...++|+++|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+. ..+..+++.+|++
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i   97 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV   97 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence            457999999999999999999999999988888888888888888889988999999999999998 8889999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCC---CCHHH
Q 027856           90 LLVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALES---MNVEN  165 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~~i~~  165 (217)
                      ++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+++..+++..++...++.++++||++|   .|+.+
T Consensus        98 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~  177 (189)
T 1z06_A           98 VFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEA  177 (189)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHH
Confidence            99999999999999999999987765 467999999999999877778889999999999999999999999   99999


Q ss_pred             HHHHHHHHHH
Q 027856          166 AFTEVLTQIY  175 (217)
Q Consensus       166 ~~~~i~~~~~  175 (217)
                      +|++|++.+.
T Consensus       178 l~~~l~~~i~  187 (189)
T 1z06_A          178 IFMTLAHKLK  187 (189)
T ss_dssp             HHHHHC----
T ss_pred             HHHHHHHHHh
Confidence            9999988765

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=2e-33  Score=207.68  Aligned_cols=167  Identities=38%  Similarity=0.638  Sum_probs=139.1

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      .....++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus        24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  103 (199)
T 2p5s_A           24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG  103 (199)
T ss_dssp             ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred             CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence            34567999999999999999999999999888788888888888888889999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC------CccCCCHHHHHHHHHHcCCcEEEEecCCCCC
Q 027856           89 ALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR------HLRAVSTEDATAFAERENTFFMETSALESMN  162 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  162 (217)
                      +|+|||++++.+++.+..|+..+......+.|+++|+||+|+.      ..+.+..+++..++...+++++++||++|.|
T Consensus       104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g  183 (199)
T 2p5s_A          104 VLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSN  183 (199)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCC
Confidence            9999999999999999999999887766689999999999996      3456778888999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027856          163 VENAFTEVLTQIY  175 (217)
Q Consensus       163 i~~~~~~i~~~~~  175 (217)
                      ++++|++|++.+.
T Consensus       184 v~el~~~l~~~i~  196 (199)
T 2p5s_A          184 IVEAVLHLAREVK  196 (199)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998775

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.6e-33  Score=207.77  Aligned_cols=164  Identities=34%  Similarity=0.465  Sum_probs=141.9

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      ....++|+++|.+|+|||||+++|++..+...+.++.+..+. ..+..++..+.+.+|||||++.+...+..++..+|++
T Consensus         5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   83 (199)
T 2gf0_A            5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF   83 (199)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred             CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence            345799999999999999999999999887777777664443 4456788889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Q 027856           90 LLVYDVTRHVTFENVERWLKELRDHTD--SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAF  167 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  167 (217)
                      ++|||++++.+++.+..|+..+.....  .+.|+++|+||+|+.. +.+..+++..++..+++.++++||++|.|++++|
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  162 (199)
T 2gf0_A           84 ILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELF  162 (199)
T ss_dssp             EEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Confidence            999999999999988888877766543  3789999999999976 5677888888999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027856          168 TEVLTQIY  175 (217)
Q Consensus       168 ~~i~~~~~  175 (217)
                      ++|++.+.
T Consensus       163 ~~l~~~~~  170 (199)
T 2gf0_A          163 QELLTLET  170 (199)
T ss_dssp             HHHHHHCS
T ss_pred             HHHHHHHh
Confidence            99987664

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=4.8e-33  Score=200.03  Aligned_cols=165  Identities=29%  Similarity=0.353  Sum_probs=134.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhh-hhhhhhcCCcEEEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRA-ITSAYYRGAVGALL   91 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~ii~   91 (217)
                      .+||+++|++|+|||||+++|++......+..+.+.+.....+.+++..+.+.+|||||++.+.. .+..+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            58999999999999999999998887776666777777788888899999999999999988876 67778899999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856           92 VYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  170 (217)
                      |||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  161 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence            9999999999999999998877654 479999999999998778889999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027856          171 LTQIYRV  177 (217)
Q Consensus       171 ~~~~~~~  177 (217)
                      ++.+...
T Consensus       162 ~~~i~~~  168 (169)
T 3q85_A          162 VRQIRLR  168 (169)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9887653

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=4.5e-33  Score=203.88  Aligned_cols=164  Identities=27%  Similarity=0.413  Sum_probs=142.1

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      ....++|+++|.+|+|||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.+|||||++.+..+ ..++..+|++
T Consensus        18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~   95 (187)
T 3c5c_A           18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF   95 (187)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence            45679999999999999999999999998888888887665 445667888899999999999888775 6689999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEec-CCCCCHHH
Q 027856           90 LLVYDVTRHVTFENVERWLKELRDHTD---SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSA-LESMNVEN  165 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~i~~  165 (217)
                      ++|||++++.+++.+..|+..+.....   .+.|+++|+||+|+.+.+.+..+++.+++...++.++++|| ++|.|+++
T Consensus        96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~  175 (187)
T 3c5c_A           96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQH  175 (187)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHH
Confidence            999999999999999999998876532   58999999999999877788899999999999999999999 89999999


Q ss_pred             HHHHHHHHHH
Q 027856          166 AFTEVLTQIY  175 (217)
Q Consensus       166 ~~~~i~~~~~  175 (217)
                      +|+.|++.+.
T Consensus       176 lf~~l~~~i~  185 (187)
T 3c5c_A          176 VFHEAVREAR  185 (187)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998775

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=1.8e-32  Score=200.15  Aligned_cols=164  Identities=20%  Similarity=0.300  Sum_probs=142.9

Q ss_pred             CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCc
Q 027856            8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAV   87 (217)
Q Consensus         8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   87 (217)
                      ......+||+++|.+|||||||+++|+++.+...+.++. . .....+.+++..+.+.+|||+|++.+.     +++.+|
T Consensus        15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~-~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~   87 (184)
T 3ihw_A           15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-G-RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD   87 (184)
T ss_dssp             -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC-E-EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred             CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc-c-eEEEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence            445678999999999999999999999999887776663 3 334777889999999999999988776     778899


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCC--CccCCCHHHHHHHHHHcC-CcEEEEecCCCCCH
Q 027856           88 GALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLR--HLRAVSTEDATAFAEREN-TFFMETSALESMNV  163 (217)
Q Consensus        88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i  163 (217)
                      ++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.  ..+.+..+++.+++...+ +.++++||++|.|+
T Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv  167 (184)
T 3ihw_A           88 AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNV  167 (184)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCH
Confidence            99999999999999999999999987653 578999999999994  456788899999999987 88999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 027856          164 ENAFTEVLTQIYRVV  178 (217)
Q Consensus       164 ~~~~~~i~~~~~~~~  178 (217)
                      +++|+++++.+.+.+
T Consensus       168 ~~lf~~l~~~i~~~~  182 (184)
T 3ihw_A          168 ERVFQDVAQKVVALR  182 (184)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999888664

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2e-32  Score=201.25  Aligned_cols=169  Identities=46%  Similarity=0.762  Sum_probs=152.7

Q ss_pred             CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCc
Q 027856            8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAV   87 (217)
Q Consensus         8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   87 (217)
                      ......++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus        10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   89 (195)
T 1x3s_A           10 EDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQ   89 (195)
T ss_dssp             TTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCC
T ss_pred             cCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence            34456799999999999999999999999998888889888888888889999999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856           88 GALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA  166 (217)
Q Consensus        88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  166 (217)
                      ++++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+ +.+..+++..++...++.++++||++|.|++++
T Consensus        90 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  168 (195)
T 1x3s_A           90 GVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCA  168 (195)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc-cccCHHHHHHHHHHcCCEEEEecCCCCCCHHHH
Confidence            99999999999999999999999877543 5789999999999954 567788889999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027856          167 FTEVLTQIYRV  177 (217)
Q Consensus       167 ~~~i~~~~~~~  177 (217)
                      |++|.+.+.+.
T Consensus       169 ~~~l~~~~~~~  179 (195)
T 1x3s_A          169 FEELVEKIIQT  179 (195)
T ss_dssp             HHHHHHHHHTS
T ss_pred             HHHHHHHHHhh
Confidence            99999988754

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=2.6e-33  Score=203.05  Aligned_cols=166  Identities=33%  Similarity=0.506  Sum_probs=146.8

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECC-eEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDD-KIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      ...++|+++|++|+|||||+++|++..+...+.++.+.+.....+.+++ ..+.+.+|||||++.+...+..+++.+|++
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   83 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV   83 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence            4579999999999999999999999988777778888778788888876 678999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcC--CCCc-EEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856           90 LLVYDVTRHVTFENVERWLKELRDHTD--SNIV-IMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA  166 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  166 (217)
                      ++|+|++++.+++.+..|+..+.....  ...| +++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  163 (178)
T 2hxs_A           84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLC  163 (178)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Confidence            999999999999999899888876432  1444 8999999999877778888999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027856          167 FTEVLTQIYR  176 (217)
Q Consensus       167 ~~~i~~~~~~  176 (217)
                      |++|.+.+.+
T Consensus       164 ~~~l~~~~~~  173 (178)
T 2hxs_A          164 FQKVAAEILG  173 (178)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHh
Confidence            9999987753

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=5.8e-33  Score=207.50  Aligned_cols=170  Identities=24%  Similarity=0.425  Sum_probs=145.7

Q ss_pred             CCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCC
Q 027856            7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGA   86 (217)
Q Consensus         7 ~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   86 (217)
                      ..+....+||+|+|.+|+|||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+
T Consensus        21 ~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~   99 (214)
T 3q3j_B           21 PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS   99 (214)
T ss_dssp             ------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred             CCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCC
Confidence            34556789999999999999999999999999888888887776 44566778889999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHH-HHHHHHHHHhhcCCCCcEEEEEeCCCCCCc------------cCCCHHHHHHHHHHcCC-cE
Q 027856           87 VGALLVYDVTRHVTFEN-VERWLKELRDHTDSNIVIMLVGNKADLRHL------------RAVSTEDATAFAERENT-FF  152 (217)
Q Consensus        87 d~ii~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~  152 (217)
                      |++|+|||++++.+++. +..|+..+.... .+.|+++|+||+|+.+.            +.+..+++..++...++ .+
T Consensus       100 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  178 (214)
T 3q3j_B          100 DAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIY  178 (214)
T ss_dssp             SEEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred             eEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEE
Confidence            99999999999999998 688999998765 58999999999999763            56889999999999998 89


Q ss_pred             EEEecCCCCC-HHHHHHHHHHHHHHHH
Q 027856          153 METSALESMN-VENAFTEVLTQIYRVV  178 (217)
Q Consensus       153 ~~~Sa~~~~~-i~~~~~~i~~~~~~~~  178 (217)
                      +++||++|.| ++++|+++++.+.+..
T Consensus       179 ~e~SA~~g~g~v~~lf~~l~~~~~~~~  205 (214)
T 3q3j_B          179 LEGSAFTSEKSIHSIFRTASMLCLNKP  205 (214)
T ss_dssp             EECCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred             EEeccCCCcccHHHHHHHHHHHHhccC
Confidence            9999999998 9999999999887554

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=3.5e-32  Score=201.16  Aligned_cols=165  Identities=36%  Similarity=0.669  Sum_probs=147.5

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeE-----------------------------
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKI-----------------------------   61 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------   61 (217)
                      ...++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..                             
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN   84 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence            457999999999999999999999999888888888888888777777655                             


Q ss_pred             --------EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCc
Q 027856           62 --------VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL  133 (217)
Q Consensus        62 --------~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~  133 (217)
                              +.+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+....  +.|+++|+||+| ...
T Consensus        85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK~D-~~~  161 (208)
T 3clv_A           85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKID-KNK  161 (208)
T ss_dssp             CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEECTT-CC-
T ss_pred             cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEECCC-ccc
Confidence                    899999999999999999999999999999999999999999999999988765  499999999999 554


Q ss_pred             cCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 027856          134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVV  178 (217)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  178 (217)
                      +.+..+++.+++...+++++++||++|.|++++|++|.+.+.++.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  206 (208)
T 3clv_A          162 FQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI  206 (208)
T ss_dssp             CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence            677889999999999999999999999999999999999888654

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.4e-33  Score=206.68  Aligned_cols=170  Identities=31%  Similarity=0.453  Sum_probs=144.5

Q ss_pred             CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCc
Q 027856            8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAV   87 (217)
Q Consensus         8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   87 (217)
                      .+....++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus        19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   97 (201)
T 3oes_A           19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVH   97 (201)
T ss_dssp             ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCC
T ss_pred             CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCC
Confidence            3445689999999999999999999999999888878877666 555556677789999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856           88 GALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA  166 (217)
Q Consensus        88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  166 (217)
                      ++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++
T Consensus        98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  177 (201)
T 3oes_A           98 GYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGI  177 (201)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Confidence            99999999999999999999999876543 47899999999999887888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027856          167 FTEVLTQIYRVV  178 (217)
Q Consensus       167 ~~~i~~~~~~~~  178 (217)
                      |++|.+.+.+..
T Consensus       178 ~~~l~~~i~~~~  189 (201)
T 3oes_A          178 FTKVIQEIARVE  189 (201)
T ss_dssp             HHHHHHHHHHC-
T ss_pred             HHHHHHHHHhhh
Confidence            999999887543

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=2.4e-32  Score=199.33  Aligned_cols=171  Identities=33%  Similarity=0.500  Sum_probs=149.1

Q ss_pred             CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCc
Q 027856            8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAV   87 (217)
Q Consensus         8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   87 (217)
                      ......++|+++|.+|+|||||+++|++..+...+.++.+... ...+.+++..+.+.+|||||++.+...+..++..+|
T Consensus        13 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   91 (187)
T 2a9k_A           13 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE   91 (187)
T ss_dssp             ----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCC
Confidence            3445679999999999999999999999998777777766554 445667888889999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856           88 GALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA  166 (217)
Q Consensus        88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  166 (217)
                      ++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++
T Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  171 (187)
T 2a9k_A           92 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKV  171 (187)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHH
Confidence            99999999999999999999988877654 47999999999999877778889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 027856          167 FTEVLTQIYRVVS  179 (217)
Q Consensus       167 ~~~i~~~~~~~~~  179 (217)
                      |++|.+.+.+.+.
T Consensus       172 ~~~l~~~i~~~~~  184 (187)
T 2a9k_A          172 FFDLMREIRARKM  184 (187)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999886653

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=1.7e-32  Score=196.65  Aligned_cols=163  Identities=33%  Similarity=0.403  Sum_probs=123.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|++|+|||||+++|.+....... ++.+.++ ...+.+++..+.+.+|||||++.+...+..++..+|++++|
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   79 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCCC-Cccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence            589999999999999999999987765433 4455544 35567789999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 027856           93 YDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~  171 (217)
                      ||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+++.
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  159 (166)
T 3q72_A           80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  159 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence            99999999999999998887653 35799999999999988788899999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027856          172 TQIYRV  177 (217)
Q Consensus       172 ~~~~~~  177 (217)
                      +.+.+.
T Consensus       160 ~~~~~~  165 (166)
T 3q72_A          160 RQIRLR  165 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            988754

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=2.1e-32  Score=201.29  Aligned_cols=167  Identities=25%  Similarity=0.486  Sum_probs=147.4

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      .....++|+++|.+|+|||||+++|++..+...+.++.+..+.. .+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus        19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   97 (194)
T 3reg_A           19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV   97 (194)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence            45678999999999999999999999999888888888766654 56678888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCc--cCCCHHHHHHHHHHcCCc-EEEEecCCCCCHH
Q 027856           89 ALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRHL--RAVSTEDATAFAERENTF-FMETSALESMNVE  164 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~  164 (217)
                      +++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.  +.+..+++.+++...++. ++++||++|.|++
T Consensus        98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  176 (194)
T 3reg_A           98 VLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLN  176 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHH
Confidence            9999999999999997 67888887654 57999999999999753  567889999999999988 9999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027856          165 NAFTEVLTQIYRV  177 (217)
Q Consensus       165 ~~~~~i~~~~~~~  177 (217)
                      ++|++|++.+.+.
T Consensus       177 ~l~~~l~~~i~~~  189 (194)
T 3reg_A          177 EVFEKSVDCIFSN  189 (194)
T ss_dssp             HHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999888643

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=1e-32  Score=200.44  Aligned_cols=169  Identities=37%  Similarity=0.676  Sum_probs=135.4

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCD-DKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      ....++|+++|++|+|||||+++|++..+...+.++.+.+.....+.++ +..+.+.+|||||++.+...+..+++.+|+
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC   84 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence            4567999999999999999999999999888888888888877777776 556899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCC-ccCCCHHHHHHHHH-HcCCcEEEEecCCCCC
Q 027856           89 ALLVYDVTRHVTFENVERWLKELRDHTD----SNIVIMLVGNKADLRH-LRAVSTEDATAFAE-RENTFFMETSALESMN  162 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~  162 (217)
                      +++|+|++++.+++.+..|+..+.....    .+.|+++|+||+|+.. .+.+..+++.+++. ..+.+++++||++|.|
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g  164 (182)
T 1ky3_A           85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN  164 (182)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence            9999999999999999999988876543    5789999999999954 34567888888887 4668899999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 027856          163 VENAFTEVLTQIYRVV  178 (217)
Q Consensus       163 i~~~~~~i~~~~~~~~  178 (217)
                      ++++|++|.+.+.+++
T Consensus       165 i~~l~~~l~~~~~~~~  180 (182)
T 1ky3_A          165 VDTAFEEIARSALQQN  180 (182)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999888654

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=2.9e-32  Score=195.40  Aligned_cols=163  Identities=34%  Similarity=0.540  Sum_probs=143.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..++|+++|.+|+|||||+++|++..+...+.++.+... ...+.+++..+.+.+|||||++.+...+..++..+|++++
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            468999999999999999999999998777777766554 3455678888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856           92 VYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  170 (217)
                      |+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+++..+++..++...+++++++||++|.|++++|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  161 (168)
T 1u8z_A           82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence            9999999999999999988877654 479999999999998777788899999999999999999999999999999999


Q ss_pred             HHHHH
Q 027856          171 LTQIY  175 (217)
Q Consensus       171 ~~~~~  175 (217)
                      .+.+.
T Consensus       162 ~~~i~  166 (168)
T 1u8z_A          162 MREIR  166 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98775

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=4.1e-32  Score=196.92  Aligned_cols=164  Identities=21%  Similarity=0.347  Sum_probs=138.9

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...+||+++|++|+|||||+++|+++.+.. +.+|.+..+ ...+.+++..+.+.+|||||++.     ..+++++|+++
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i   77 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI   77 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence            457999999999999999999999998876 667776444 56667788889999999999876     35778899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhc---CCCCcEEEEEeCCCCC--CccCCCHHHHHHHHHHc-CCcEEEEecCCCCCHH
Q 027856           91 LVYDVTRHVTFENVERWLKELRDHT---DSNIVIMLVGNKADLR--HLRAVSTEDATAFAERE-NTFFMETSALESMNVE  164 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~---~~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~  164 (217)
                      +|||++++.+++.+..|+..+....   ..+.|+++|+||+|+.  ..+.+..+++.+++... +++++++||++|.|++
T Consensus        78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  157 (178)
T 2iwr_A           78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD  157 (178)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence            9999999999999988766655443   3579999999999994  44667888888888876 6889999999999999


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 027856          165 NAFTEVLTQIYRVVSRK  181 (217)
Q Consensus       165 ~~~~~i~~~~~~~~~~~  181 (217)
                      ++|+++++.+.+.....
T Consensus       158 ~lf~~l~~~~~~~~~~~  174 (178)
T 2iwr_A          158 RVFQEVAQKVVTLRKQQ  174 (178)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhh
Confidence            99999999998876654

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=3.4e-32  Score=201.18  Aligned_cols=170  Identities=30%  Similarity=0.471  Sum_probs=139.2

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      .....++|+++|.+|+|||||+++|++..+...+.+|.+..+ ...+.+++..+.+.+|||||++.+..++..++.++|+
T Consensus        16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   94 (201)
T 2q3h_A           16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI   94 (201)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence            456789999999999999999999999988777777776444 4566778888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCC------------ccCCCHHHHHHHHHHcCC-cEEE
Q 027856           89 ALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRH------------LRAVSTEDATAFAERENT-FFME  154 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~  154 (217)
                      +++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+..            .+.+..+++..++...+. .+++
T Consensus        95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  173 (201)
T 2q3h_A           95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE  173 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence            99999999999999986 7998887765 3899999999999975            246778888999988887 8999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHHHhh
Q 027856          155 TSALESMNVENAFTEVLTQIYRVVSR  180 (217)
Q Consensus       155 ~Sa~~~~~i~~~~~~i~~~~~~~~~~  180 (217)
                      +||++|.|++++|++|++.+.+...+
T Consensus       174 ~Sa~~g~gi~~l~~~l~~~~~~~~~~  199 (201)
T 2q3h_A          174 CSALTQKNLKEVFDAAIVAGIQYSDT  199 (201)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred             EecCCCCCHHHHHHHHHHHHhccccc
Confidence            99999999999999999998876543

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=5.6e-33  Score=206.15  Aligned_cols=171  Identities=30%  Similarity=0.467  Sum_probs=115.8

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhC--cCCCCCcccceeEeEEEEEEECCe--EEEEEEEeCCChhhhhhhhhhhhcCC
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRN--EFSLESKSTIGVEFATRSIRCDDK--IVKAQIWDTAGQERYRAITSAYYRGA   86 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~   86 (217)
                      ...++|+|+|.+|+|||||+++|++.  .+...+.+|.+.++....+.+++.  .+.+.+|||||++.+...+..+++.+
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            46799999999999999999999999  777777788877777888888876  78999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCC-ccCCCHHHHHHHHHHcCCcEEEEecCC-CC
Q 027856           87 VGALLVYDVTRHVTFENVERWLKELRDHTD---SNIVIMLVGNKADLRH-LRAVSTEDATAFAERENTFFMETSALE-SM  161 (217)
Q Consensus        87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~  161 (217)
                      |++++|||++++.+++.+..|+..+.....   .+.|+++|+||+|+.+ .+.+..+++.+++...++.++++||++ |.
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~  177 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK  177 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence            999999999999999999999999988765   5899999999999987 677888999999999999999999999 99


Q ss_pred             CHHHHHHHHHHHHHHHHhhh
Q 027856          162 NVENAFTEVLTQIYRVVSRK  181 (217)
Q Consensus       162 ~i~~~~~~i~~~~~~~~~~~  181 (217)
                      |++++|++|.+.+.+...++
T Consensus       178 gi~~l~~~i~~~~~~~~~~~  197 (208)
T 2yc2_C          178 DADAPFLSIATTFYRNYEDK  197 (208)
T ss_dssp             --CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhh
Confidence            99999999999988776554

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=5.9e-33  Score=206.95  Aligned_cols=167  Identities=30%  Similarity=0.542  Sum_probs=142.8

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++|+++|++|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|+++
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   85 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   85 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence            4679999999999999999999999998877777776554 445667888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCccC--------CCHHHHHHHHHHcCC-cEEEEecCCC
Q 027856           91 LVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHLRA--------VSTEDATAFAERENT-FFMETSALES  160 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~~~  160 (217)
                      +|||++++.+++.+. .|+..+.... ++.|+++|+||+|+.+.+.        +..+++.+++...++ .++++||++|
T Consensus        86 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g  164 (212)
T 2j0v_A           86 LAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQ  164 (212)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCC
Confidence            999999999999986 7999887765 4899999999999976433        367888889998886 8999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHh
Q 027856          161 MNVENAFTEVLTQIYRVVS  179 (217)
Q Consensus       161 ~~i~~~~~~i~~~~~~~~~  179 (217)
                      .|++++|++|++.+.+...
T Consensus       165 ~gi~~l~~~l~~~~~~~~~  183 (212)
T 2j0v_A          165 QNVKAVFDTAIKVVLQPPR  183 (212)
T ss_dssp             TTHHHHHHHHHHHHHCC--
T ss_pred             CCHHHHHHHHHHHHhhhhh
Confidence            9999999999998876543

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=4e-32  Score=194.48  Aligned_cols=163  Identities=31%  Similarity=0.497  Sum_probs=144.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .++|+++|++|+|||||+++|+++.+...+.++.+... ...+.+++..+.+.+|||||++.+...+..++..+|++++|
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            58999999999999999999999988877777765443 56677888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 027856           93 YDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~  171 (217)
                      +|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+++..++...++...+++++++||++|.|++++|++|.
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  161 (167)
T 1kao_A           82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV  161 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHH
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHH
Confidence            999999999999888888876543 5799999999999987777888889999999999999999999999999999999


Q ss_pred             HHHHH
Q 027856          172 TQIYR  176 (217)
Q Consensus       172 ~~~~~  176 (217)
                      +.+.+
T Consensus       162 ~~~~~  166 (167)
T 1kao_A          162 RQMNY  166 (167)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            87753

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=4.2e-32  Score=194.59  Aligned_cols=162  Identities=31%  Similarity=0.517  Sum_probs=143.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .++|+++|.+|+|||||+++|+++.+...+.++.+.... ..+.+++..+.+.+|||||++.+...+..++..+|++++|
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   81 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            589999999999999999999999888878777775553 4566778889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHc-CCcEEEEecCCCCCHHHHHHHH
Q 027856           93 YDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERE-NTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i  170 (217)
                      +|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++... +.+++++||++|.|++++|++|
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  161 (167)
T 1c1y_A           82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL  161 (167)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHH
Confidence            99999999999988888887653 358999999999999887778888899998887 7889999999999999999999


Q ss_pred             HHHHH
Q 027856          171 LTQIY  175 (217)
Q Consensus       171 ~~~~~  175 (217)
                      .+.+.
T Consensus       162 ~~~i~  166 (167)
T 1c1y_A          162 VRQIN  166 (167)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            98763

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=6e-32  Score=201.22  Aligned_cols=168  Identities=28%  Similarity=0.372  Sum_probs=139.8

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcC--CCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhh-hhhhhhhhhcC
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEF--SLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER-YRAITSAYYRG   85 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~   85 (217)
                      .....+||+|+|.+|||||||+++|++...  ...+ ++.+.+.....+.+++..+.+.+|||+|.+. +..+...+++.
T Consensus        33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~  111 (211)
T 2g3y_A           33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV  111 (211)
T ss_dssp             --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence            345679999999999999999999997543  3333 4466666677778899989999999999876 45567778899


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHH
Q 027856           86 AVGALLVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVE  164 (217)
Q Consensus        86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  164 (217)
                      +|++++|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+.+..++...++...++.++++||++|.|++
T Consensus       112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~  191 (211)
T 2g3y_A          112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK  191 (211)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            999999999999999999999988876542 2479999999999998767788888888888899999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027856          165 NAFTEVLTQIYRV  177 (217)
Q Consensus       165 ~~~~~i~~~~~~~  177 (217)
                      ++|++|++.+...
T Consensus       192 elf~~l~~~i~~~  204 (211)
T 2g3y_A          192 ELFEGIVRQVRLR  204 (211)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999987643

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=5.2e-32  Score=199.51  Aligned_cols=167  Identities=35%  Similarity=0.473  Sum_probs=146.8

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      ....++|+++|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||||++. ...+..++..+|++
T Consensus        25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i  102 (196)
T 2atv_A           25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF  102 (196)
T ss_dssp             --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence            35679999999999999999999999998888878777655 45566788889999999999887 77788899999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCC-CHHHHH
Q 027856           90 LLVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESM-NVENAF  167 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~  167 (217)
                      ++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|. |++++|
T Consensus       103 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~  182 (196)
T 2atv_A          103 VLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIF  182 (196)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHH
Confidence            99999999999999999988887654 3589999999999998877888899999999999999999999999 999999


Q ss_pred             HHHHHHHHHHH
Q 027856          168 TEVLTQIYRVV  178 (217)
Q Consensus       168 ~~i~~~~~~~~  178 (217)
                      ++|++.+.+..
T Consensus       183 ~~l~~~i~~~~  193 (196)
T 2atv_A          183 YELCREVRRRR  193 (196)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhhc
Confidence            99999887654

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=8.2e-32  Score=198.05  Aligned_cols=166  Identities=27%  Similarity=0.477  Sum_probs=145.4

Q ss_pred             CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCc
Q 027856            8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAV   87 (217)
Q Consensus         8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   87 (217)
                      .+....++|+++|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|
T Consensus        13 ~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   91 (194)
T 2atx_A           13 GPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTD   91 (194)
T ss_dssp             CCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCS
T ss_pred             CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCC
Confidence            3445789999999999999999999999988877777776554 445667788899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCc------------cCCCHHHHHHHHHHcCC-cEE
Q 027856           88 GALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHL------------RAVSTEDATAFAERENT-FFM  153 (217)
Q Consensus        88 ~ii~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~  153 (217)
                      ++++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.            +.+..+++.+++...++ .++
T Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  170 (194)
T 2atx_A           92 VFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYV  170 (194)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEE
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEE
Confidence            999999999999999987 7988888764 38999999999999753            35778889999999887 899


Q ss_pred             EEecCCCCCHHHHHHHHHHHHH
Q 027856          154 ETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       154 ~~Sa~~~~~i~~~~~~i~~~~~  175 (217)
                      ++||++|.|++++|++|++.++
T Consensus       171 ~~Sa~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          171 ECSALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EeeCCCCCCHHHHHHHHHHHHh
Confidence            9999999999999999998775

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=100.00  E-value=3.3e-31  Score=194.11  Aligned_cols=169  Identities=31%  Similarity=0.483  Sum_probs=136.2

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      +....++|+++|.+|+|||||+++|++..+...+.++.+... ...+.+++..+.+.+|||||++.+...+..++..+|+
T Consensus        17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   95 (190)
T 3con_A           17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG   95 (190)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSE
T ss_pred             cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence            344679999999999999999999999988777766665443 4566678888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Q 027856           89 ALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAF  167 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  167 (217)
                      +++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.. +....+++.+++...+++++++||++|.|++++|
T Consensus        96 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  174 (190)
T 3con_A           96 FLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAF  174 (190)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            9999999999999999999988876553 4789999999999976 5677888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 027856          168 TEVLTQIYRVVS  179 (217)
Q Consensus       168 ~~i~~~~~~~~~  179 (217)
                      ++|.+.+.+.+.
T Consensus       175 ~~l~~~~~~~~~  186 (190)
T 3con_A          175 YTLVREIRQYRM  186 (190)
T ss_dssp             HHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHH
Confidence            999998876544

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=1e-31  Score=196.01  Aligned_cols=163  Identities=28%  Similarity=0.491  Sum_probs=142.6

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++|+++|++|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   83 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   83 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence            5679999999999999999999999998877778877665 345667888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCc------------cCCCHHHHHHHHHHcC-CcEEEEe
Q 027856           91 LVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRHL------------RAVSTEDATAFAEREN-TFFMETS  156 (217)
Q Consensus        91 ~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~S  156 (217)
                      +|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.            +.+..+++.+++...+ ..++++|
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  162 (184)
T 1m7b_A           84 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS  162 (184)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECB
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEee
Confidence            99999999999998 67988887654 48999999999999742            4578888999998887 6899999


Q ss_pred             cC-CCCCHHHHHHHHHHHHH
Q 027856          157 AL-ESMNVENAFTEVLTQIY  175 (217)
Q Consensus       157 a~-~~~~i~~~~~~i~~~~~  175 (217)
                      |+ ++.|++++|+.+++.+.
T Consensus       163 a~~~~~gi~~l~~~i~~~~l  182 (184)
T 1m7b_A          163 ALQSENSVRDIFHVATLACV  182 (184)
T ss_dssp             TTTBHHHHHHHHHHHHHHHH
T ss_pred             ecCCCcCHHHHHHHHHHHHh
Confidence            99 68999999999998875

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=1.2e-31  Score=199.07  Aligned_cols=166  Identities=27%  Similarity=0.483  Sum_probs=143.3

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      .....++|+++|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..++..+|+
T Consensus        24 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  102 (205)
T 1gwn_A           24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA  102 (205)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCE
Confidence            345679999999999999999999999998887778877665 3456678888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCc------------cCCCHHHHHHHHHHcC-CcEEE
Q 027856           89 ALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRHL------------RAVSTEDATAFAEREN-TFFME  154 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~  154 (217)
                      +++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.            +.+..+++.+++...+ ..+++
T Consensus       103 ~ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e  181 (205)
T 1gwn_A          103 VLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE  181 (205)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEE
Confidence            9999999999999998 68988887664 47999999999999742            4577888999998887 68999


Q ss_pred             EecC-CCCCHHHHHHHHHHHHHH
Q 027856          155 TSAL-ESMNVENAFTEVLTQIYR  176 (217)
Q Consensus       155 ~Sa~-~~~~i~~~~~~i~~~~~~  176 (217)
                      +||+ ++.|++++|+.|++.+++
T Consensus       182 ~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          182 CSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             CCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             eeeccCCcCHHHHHHHHHHHHhh
Confidence            9999 689999999999988764

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=100.00  E-value=1.6e-31  Score=194.88  Aligned_cols=163  Identities=32%  Similarity=0.528  Sum_probs=143.0

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++|+++|.+|+|||||+++|+++.+...+.++.+... ...+.+++..+.+.+|||||++.+...+..++..+|+++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   81 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence            3579999999999999999999999988877777776544 455667888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCc------------cCCCHHHHHHHHHHcCC-cEEEEe
Q 027856           91 LVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHL------------RAVSTEDATAFAERENT-FFMETS  156 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  156 (217)
                      +|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+.            +.+..++...++...+. .++++|
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  160 (186)
T 1mh1_A           82 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (186)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence            999999999999987 68888877653 8999999999999653            45677888889998887 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHH
Q 027856          157 ALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       157 a~~~~~i~~~~~~i~~~~~  175 (217)
                      |++|.|++++|+++.+.+.
T Consensus       161 a~~g~gi~~l~~~l~~~~~  179 (186)
T 1mh1_A          161 ALTQRGLKTVFDEAIRAVL  179 (186)
T ss_dssp             TTTCTTHHHHHHHHHHHHS
T ss_pred             CCCccCHHHHHHHHHHHHh
Confidence            9999999999999998775

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=100.00  E-value=4.4e-32  Score=203.07  Aligned_cols=172  Identities=28%  Similarity=0.499  Sum_probs=147.4

Q ss_pred             CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEEC-CeEEEEEEEeCCChhhhhhhhhhhhcCC
Q 027856            8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCD-DKIVKAQIWDTAGQERYRAITSAYYRGA   86 (217)
Q Consensus         8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   86 (217)
                      ......++|+++|.+|+|||||+++|++..+...+.++.+.......+... +..+.+.+|||||++.+...+..++..+
T Consensus         6 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   85 (218)
T 4djt_A            6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGA   85 (218)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred             ccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcC
Confidence            344568999999999999999999999998887777888777776666554 4448999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856           87 VGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA  166 (217)
Q Consensus        87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  166 (217)
                      |++++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...++.++++||++|.|++++
T Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l  165 (218)
T 4djt_A           86 SGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLP  165 (218)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHH
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Confidence            99999999999999999999999998887777999999999999887778888888898889999999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 027856          167 FTEVLTQIYRVVS  179 (217)
Q Consensus       167 ~~~i~~~~~~~~~  179 (217)
                      |++|.+.+.+...
T Consensus       166 ~~~l~~~~~~~~~  178 (218)
T 4djt_A          166 FLHLARIFTGRPD  178 (218)
T ss_dssp             HHHHHHHHHCCTT
T ss_pred             HHHHHHHHhcccc
Confidence            9999998876543

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=5.7e-31  Score=194.77  Aligned_cols=164  Identities=30%  Similarity=0.487  Sum_probs=144.2

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++|+++|.+|+|||||+++|.+..+...+.++.+.++. ..+.+++..+.+.+|||||++.+...+..++..+|+++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence            45799999999999999999999999988877777776654 34667888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCc------------cCCCHHHHHHHHHHcCC-cEEEEe
Q 027856           91 LVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRHL------------RAVSTEDATAFAERENT-FFMETS  156 (217)
Q Consensus        91 ~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  156 (217)
                      +|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+...            +.+..+++..++...+. .++++|
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (201)
T 2gco_A          102 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS  180 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence            99999999999998 67888887654 48999999999999764            45777888899999887 799999


Q ss_pred             cCCCCCHHHHHHHHHHHHHH
Q 027856          157 ALESMNVENAFTEVLTQIYR  176 (217)
Q Consensus       157 a~~~~~i~~~~~~i~~~~~~  176 (217)
                      |++|.|++++|++|.+.+++
T Consensus       181 A~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          181 AKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             TTTCTTHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999988763

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=100.00  E-value=2.1e-31  Score=199.04  Aligned_cols=166  Identities=31%  Similarity=0.488  Sum_probs=124.5

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++|+++|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..++..+|+++
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            4579999999999999999999999988777767765443 455677888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCcc------------CCCHHHHHHHHHHcCC-cEEEEe
Q 027856           91 LVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHLR------------AVSTEDATAFAERENT-FFMETS  156 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~S  156 (217)
                      +|||++++.+++.+. .|+..+.... .+.|+++|+||+|+....            .+..+++..++...++ .++++|
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  189 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS  189 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence            999999999999986 6888887654 578999999999997642            5677888899999887 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHH
Q 027856          157 ALESMNVENAFTEVLTQIYRVV  178 (217)
Q Consensus       157 a~~~~~i~~~~~~i~~~~~~~~  178 (217)
                      |++|.|++++|++|++.+.+..
T Consensus       190 A~~g~gi~el~~~l~~~~~~~~  211 (214)
T 2j1l_A          190 ARLHDNVHAVFQEAAEVALSSR  211 (214)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHC-
T ss_pred             CCCCCCHHHHHHHHHHHHHHhh
Confidence            9999999999999999887544

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=100.00  E-value=1.7e-30  Score=191.92  Aligned_cols=171  Identities=81%  Similarity=1.220  Sum_probs=151.6

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      +..++|+++|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..++..+++++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i   82 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   82 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence            45799999999999999999999999988888888888888888889999999999999999999888899999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856           91 LVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  170 (217)
                      +|+|+.+..+++.+..|+..+......+.|+++++||+|+.+.+....+++..++...++.++++||+++.|++++|++|
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l  162 (199)
T 2f9l_A           83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI  162 (199)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999888889888776555678999999999998767778888999999999999999999999999999999


Q ss_pred             HHHHHHHHhhh
Q 027856          171 LTQIYRVVSRK  181 (217)
Q Consensus       171 ~~~~~~~~~~~  181 (217)
                      .+.+.+...+.
T Consensus       163 ~~~~~~~~~~~  173 (199)
T 2f9l_A          163 LTEIYRIVSQK  173 (199)
T ss_dssp             HHHHHHHHHTS
T ss_pred             HHHHHHHHhhc
Confidence            99998765443

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.5e-31  Score=191.28  Aligned_cols=162  Identities=32%  Similarity=0.471  Sum_probs=140.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..++|+++|.+|+|||||+++|++..+...+.++.+... ...+..++..+.+.+|||||++.+...+..++..+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            358999999999999999999999988777767766544 3445678888899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 027856           92 VYDVTRHVTFENVERWLKELRDHTD--SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTE  169 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  169 (217)
                      |+|++++.+++.+..|+..+.....  .+.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|++
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (172)
T 2erx_A           81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  160 (172)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence            9999999999988888888776542  47899999999999877778888888899989999999999999999999999


Q ss_pred             HHHHH
Q 027856          170 VLTQI  174 (217)
Q Consensus       170 i~~~~  174 (217)
                      |.+.+
T Consensus       161 l~~~~  165 (172)
T 2erx_A          161 LLNLE  165 (172)
T ss_dssp             HHHTC
T ss_pred             HHHHH
Confidence            98654

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=100.00  E-value=4.8e-32  Score=203.35  Aligned_cols=172  Identities=31%  Similarity=0.548  Sum_probs=151.1

Q ss_pred             CCCCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhc
Q 027856            5 RADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYR   84 (217)
Q Consensus         5 ~~~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   84 (217)
                      .........+||+++|.+|+|||||+++|+.+.+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++
T Consensus         7 ~~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   86 (221)
T 3gj0_A            7 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYI   86 (221)
T ss_dssp             CSTTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHT
T ss_pred             ccCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHh
Confidence            33445667899999999999999999998888877777888888999989989999999999999999999999999999


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHH
Q 027856           85 GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVE  164 (217)
Q Consensus        85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  164 (217)
                      .+|++++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+...  ..+...++...++.++++||++|.|++
T Consensus        87 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~  163 (221)
T 3gj0_A           87 QAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFE  163 (221)
T ss_dssp             TCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSS--CGGGCCHHHHHTCEEEECBGGGTBTTT
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCccccccc--cHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            9999999999999999999999999998765 4889999999999976432  225666778889999999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 027856          165 NAFTEVLTQIYRVVS  179 (217)
Q Consensus       165 ~~~~~i~~~~~~~~~  179 (217)
                      ++|++|.+.+.....
T Consensus       164 ~l~~~l~~~l~~~~~  178 (221)
T 3gj0_A          164 KPFLWLARKLIGDPN  178 (221)
T ss_dssp             HHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHhCcc
Confidence            999999998876543

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=100.00  E-value=3.9e-34  Score=211.48  Aligned_cols=166  Identities=51%  Similarity=0.819  Sum_probs=142.5

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      .+..++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus        30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~  109 (199)
T 3l0i_B           30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI  109 (199)
T ss_dssp             CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence            46789999999999999999999999998888888888888888888999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 027856           90 LLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTE  169 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  169 (217)
                      ++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|++
T Consensus       110 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~  189 (199)
T 3l0i_B          110 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT  189 (199)
T ss_dssp             EECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            99999999999999999999998877778999999999999877777777788899999999999999999999999999


Q ss_pred             HHHHHH
Q 027856          170 VLTQIY  175 (217)
Q Consensus       170 i~~~~~  175 (217)
                      |.+.+.
T Consensus       190 l~~~l~  195 (199)
T 3l0i_B          190 MAAEIK  195 (199)
T ss_dssp             HTTTTT
T ss_pred             HHHHHH
Confidence            987654

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.98  E-value=1.6e-30  Score=185.85  Aligned_cols=161  Identities=32%  Similarity=0.539  Sum_probs=141.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .++|+++|.+|+|||||+++|++..+...+.++.+... ...+.+++..+.+.+|||||++.+...+..++..+|++++|
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            48999999999999999999999988777766665443 55566788889999999999999888999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 027856           93 YDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~  171 (217)
                      +|++++.+++.+..|+..+..... .+.|+++|+||+|+.. +....++..+++...+++++++||++|.|++++|++|.
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  160 (166)
T 2ce2_X           82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV  160 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence            999999999999899988876653 4799999999999976 55678888999999999999999999999999999999


Q ss_pred             HHHH
Q 027856          172 TQIY  175 (217)
Q Consensus       172 ~~~~  175 (217)
                      +.+.
T Consensus       161 ~~~~  164 (166)
T 2ce2_X          161 REIR  164 (166)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8775

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.98  E-value=6.8e-32  Score=198.62  Aligned_cols=170  Identities=23%  Similarity=0.252  Sum_probs=138.2

Q ss_pred             CCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCC-----------CcccceeEeEEEEE-EECCeEEEEEEEeCCChhh
Q 027856            7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLE-----------SKSTIGVEFATRSI-RCDDKIVKAQIWDTAGQER   74 (217)
Q Consensus         7 ~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~   74 (217)
                      .......+||+++|.+|+|||||++.+.+.. ...           +.+|.+.++....+ .+++..+.+.+|||||++.
T Consensus         8 ~~~~~~~~ki~vvG~~~~GKssL~~~l~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   86 (198)
T 3t1o_A            8 FANREINFKIVYYGPGLSGKTTNLKWIYSKV-PEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVF   86 (198)
T ss_dssp             TTTTEEEEEEEEECSTTSSHHHHHHHHHHTS-CGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCS
T ss_pred             hhccccccEEEEECCCCCCHHHHHHHHHhhc-cccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHH
Confidence            3455778999999999999999997666543 333           22355555444444 5567788999999999999


Q ss_pred             hhhhhhhhhcCCcEEEEEEECC------ChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHc
Q 027856           75 YRAITSAYYRGAVGALLVYDVT------RHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERE  148 (217)
Q Consensus        75 ~~~~~~~~~~~~d~ii~v~d~~------~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~  148 (217)
                      +...+..+++.+|++++|||++      +..+++.+..|+..+. ....+.|+++|+||+|+.+  .+..+++.+++...
T Consensus        87 ~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~  163 (198)
T 3t1o_A           87 YNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPD--ALPVEMVRAVVDPE  163 (198)
T ss_dssp             CSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTT--CCCHHHHHHHHCTT
T ss_pred             HHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhccc--ccCHHHHHHHHHhc
Confidence            9999999999999999999999      5567777777777773 2335899999999999976  47888999999999


Q ss_pred             CC-cEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 027856          149 NT-FFMETSALESMNVENAFTEVLTQIYRVVSR  180 (217)
Q Consensus       149 ~~-~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~  180 (217)
                      ++ .++++||++|.|++++|++|.+.+.+...+
T Consensus       164 ~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~  196 (198)
T 3t1o_A          164 GKFPVLEAVATEGKGVFETLKEVSRLVLARVAG  196 (198)
T ss_dssp             CCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred             CCceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence            98 899999999999999999999999877643

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=1.4e-30  Score=193.57  Aligned_cols=164  Identities=32%  Similarity=0.496  Sum_probs=137.9

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++|+++|.+|+|||||+++|++..+...+.++.+..+.. .+.+++..+.+.+|||||++.+...+..++..+|+++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            357899999999999999999999999887777777665543 3667888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCc------------cCCCHHHHHHHHHHcCC-cEEEEe
Q 027856           91 LVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRHL------------RAVSTEDATAFAERENT-FFMETS  156 (217)
Q Consensus        91 ~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  156 (217)
                      +|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+...            +.+..++...++...+. .++++|
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS  180 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence            99999999999988 67888887654 48999999999999754            35677888888888887 799999


Q ss_pred             cCCCCCHHHHHHHHHHHHHH
Q 027856          157 ALESMNVENAFTEVLTQIYR  176 (217)
Q Consensus       157 a~~~~~i~~~~~~i~~~~~~  176 (217)
                      |++|.|++++|++|.+.+.+
T Consensus       181 A~~g~gi~el~~~l~~~i~~  200 (207)
T 2fv8_A          181 AKTKEGVREVFETATRAALQ  200 (207)
T ss_dssp             TTTCTTHHHHHHHHHHHHHS
T ss_pred             CCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999988764

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.98  E-value=1.8e-30  Score=190.87  Aligned_cols=167  Identities=28%  Similarity=0.366  Sum_probs=137.1

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcC--CCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhh-hhhhhhhhhcCCc
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEF--SLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER-YRAITSAYYRGAV   87 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d   87 (217)
                      ...++|+++|.+|||||||+++|++...  ...+ ++.+.+.....+.+++..+.+.+|||+|.+. +..+...+++.+|
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~   82 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD   82 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence            3469999999999999999999997433  3333 3456666667778899999999999999766 4556777888999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856           88 GALLVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA  166 (217)
Q Consensus        88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  166 (217)
                      ++++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+...+.+..++...++...++.++++||++|.|++++
T Consensus        83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l  162 (192)
T 2cjw_A           83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL  162 (192)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence            9999999999999999999988877653 357899999999999876778888888888888899999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027856          167 FTEVLTQIYRVV  178 (217)
Q Consensus       167 ~~~i~~~~~~~~  178 (217)
                      |+++.+.+....
T Consensus       163 f~~l~~~~~~~~  174 (192)
T 2cjw_A          163 FEGIVRQVRLRR  174 (192)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhc
Confidence            999999886544

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.97  E-value=1.5e-31  Score=194.49  Aligned_cols=163  Identities=29%  Similarity=0.530  Sum_probs=126.4

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++|+++|++|+|||||+++|++..+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   84 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI   84 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence            45699999999999999999999999887777676654432 23445666788899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCccC----------CCHHHHHHHHHHcCC-cEEEEecC
Q 027856           91 LVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHLRA----------VSTEDATAFAERENT-FFMETSAL  158 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  158 (217)
                      +|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.+.          +..+++.+++...+. .++++||+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  163 (182)
T 3bwd_D           85 LAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSK  163 (182)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECC
Confidence            999999999999987 6988887765 3899999999999966433          477888889988886 89999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 027856          159 ESMNVENAFTEVLTQIY  175 (217)
Q Consensus       159 ~~~~i~~~~~~i~~~~~  175 (217)
                      +|.|++++|++|++.++
T Consensus       164 ~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          164 SQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             TCTTHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHh
Confidence            99999999999998764

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.97  E-value=1.2e-30  Score=193.49  Aligned_cols=163  Identities=31%  Similarity=0.514  Sum_probs=138.8

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      ....++|+++|.+|+|||||+++|+++.+...+.++.+ +.....+.+++..+.+.+|||||++.+...+..++..+|++
T Consensus        27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  105 (204)
T 4gzl_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF  105 (204)
T ss_dssp             ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence            34579999999999999999999999988877767764 34455666788889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCcc------------CCCHHHHHHHHHHcCCc-EEEE
Q 027856           90 LLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHLR------------AVSTEDATAFAERENTF-FMET  155 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~-~~~~  155 (217)
                      ++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+....            .+..+++..++...++. ++++
T Consensus       106 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  184 (204)
T 4gzl_A          106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  184 (204)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence            9999999999999986 7888888765 589999999999997643            27778888899998864 9999


Q ss_pred             ecCCCCCHHHHHHHHHHHH
Q 027856          156 SALESMNVENAFTEVLTQI  174 (217)
Q Consensus       156 Sa~~~~~i~~~~~~i~~~~  174 (217)
                      ||++|.|++++|++|++.+
T Consensus       185 SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          185 SALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             CTTTCTTHHHHHHHHHHTT
T ss_pred             eCCCCCCHHHHHHHHHHHh
Confidence            9999999999999998754

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.97  E-value=1.1e-30  Score=192.65  Aligned_cols=166  Identities=16%  Similarity=0.307  Sum_probs=129.9

Q ss_pred             CCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcC
Q 027856            7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG   85 (217)
Q Consensus         7 ~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   85 (217)
                      ..+....++|+|+|.+|+|||||+++|++..+.. .+.+|.+....  .+.  ...+.+.+|||||++.+...+..+++.
T Consensus        11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~   86 (199)
T 4bas_A           11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TFE--KGRVAFTVFDMGGAKKFRGLWETYYDN   86 (199)
T ss_dssp             -----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EEE--ETTEEEEEEEECCSGGGGGGGGGGCTT
T ss_pred             ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EEE--eCCEEEEEEECCCCHhHHHHHHHHHhc
Confidence            4456778999999999999999999999999887 67788774433  333  334789999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcC--------CCCcEEEEEeCCCCCCccCCCHHHHHHH------HHHcCCc
Q 027856           86 AVGALLVYDVTRHVTFENVERWLKELRDHTD--------SNIVIMLVGNKADLRHLRAVSTEDATAF------AERENTF  151 (217)
Q Consensus        86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~--------~~~p~ivv~nK~D~~~~~~~~~~~~~~~------~~~~~~~  151 (217)
                      +|++|+|||++++.+++.+..|+..+.....        .+.|+++|+||+|+....  ..++....      +...++.
T Consensus        87 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~  164 (199)
T 4bas_A           87 IDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK--TAAELVEILDLTTLMGDHPFV  164 (199)
T ss_dssp             CSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC--CHHHHHHHHTHHHHHTTSCEE
T ss_pred             CCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC--CHHHHHHHhcchhhccCCeeE
Confidence            9999999999999999999888888765421        278999999999997642  22222221      1346678


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHHH
Q 027856          152 FMETSALESMNVENAFTEVLTQIYRVV  178 (217)
Q Consensus       152 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~  178 (217)
                      ++++||++|.|++++|++|.+.+.+..
T Consensus       165 ~~~~Sa~~g~gv~~l~~~l~~~~~~~~  191 (199)
T 4bas_A          165 IFASNGLKGTGVHEGFSWLQETASRQS  191 (199)
T ss_dssp             EEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred             EEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence            999999999999999999999888664

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.97  E-value=4.6e-29  Score=183.15  Aligned_cols=167  Identities=81%  Similarity=1.214  Sum_probs=150.6

Q ss_pred             CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCc
Q 027856            8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAV   87 (217)
Q Consensus         8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   87 (217)
                      .+.+..++|+++|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..++..++
T Consensus        24 ~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~  103 (191)
T 1oix_A           24 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAV  103 (191)
T ss_dssp             CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCC
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCC
Confidence            34567899999999999999999999999998888899999988889999999899999999999988888888899999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Q 027856           88 GALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAF  167 (217)
Q Consensus        88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  167 (217)
                      ++++|+|..+..+++.+..|+..+........|+++++||+|+.+......+++..++...++.++++|++++.+++++|
T Consensus       104 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~  183 (191)
T 1oix_A          104 GALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF  183 (191)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999888888888766555578999999999998766778888999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027856          168 TEVLTQI  174 (217)
Q Consensus       168 ~~i~~~~  174 (217)
                      +.|.+.+
T Consensus       184 ~~l~~~i  190 (191)
T 1oix_A          184 QTILTEI  190 (191)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998765

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.97  E-value=1.5e-29  Score=185.38  Aligned_cols=161  Identities=22%  Similarity=0.363  Sum_probs=130.1

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCc-CCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNE-FSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      ....++|+++|.+|+|||||+++|++.. +...+.+|.+  .....+.+++  +.+.+|||||++.+...+..++..+|+
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~   93 (190)
T 2h57_A           18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQA   93 (190)
T ss_dssp             ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence            4468999999999999999999999987 4555666665  3344555554  689999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCccCCCHHHHHHHHH-----HcCCcEEEEecCCC
Q 027856           89 ALLVYDVTRHVTFENVERWLKELRDHTD---SNIVIMLVGNKADLRHLRAVSTEDATAFAE-----RENTFFMETSALES  160 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~  160 (217)
                      +++|+|++++.+++.+..|+..+.....   .+.|+++|+||+|+.+  ....+++.+...     ..++.++++||++|
T Consensus        94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  171 (190)
T 2h57_A           94 IIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAIKG  171 (190)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc--CCCHHHHHHHhChhhccCCceEEEEccCCCC
Confidence            9999999999999999888888776543   4799999999999975  345566665553     23567999999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q 027856          161 MNVENAFTEVLTQIYR  176 (217)
Q Consensus       161 ~~i~~~~~~i~~~~~~  176 (217)
                      .|++++|++|.+.+.+
T Consensus       172 ~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          172 EGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             BTHHHHHHHHHHHC--
T ss_pred             cCHHHHHHHHHHHHHH
Confidence            9999999999987653

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.97  E-value=7.9e-29  Score=180.85  Aligned_cols=160  Identities=19%  Similarity=0.327  Sum_probs=129.6

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++|+++|++|+|||||+++|+++. ...+.+|.+..  ...+.+++  +.+.+|||||++.+...+..+++.+|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   90 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI   90 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            467999999999999999999999988 55666776644  33444554  68999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHH
Q 027856           91 LVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAE-----RENTFFMETSALESMNVE  164 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~  164 (217)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.  ...++..+...     ..+++++++||++|.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA--LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL  168 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC--CCHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence            9999999999999888888776542 257999999999999763  23444433322     235679999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027856          165 NAFTEVLTQIYRV  177 (217)
Q Consensus       165 ~~~~~i~~~~~~~  177 (217)
                      ++|+++.+.+.+.
T Consensus       169 ~l~~~l~~~i~~~  181 (186)
T 1ksh_A          169 PGIDWLLDDISSR  181 (186)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999887644

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.97  E-value=2.8e-29  Score=183.76  Aligned_cols=160  Identities=20%  Similarity=0.335  Sum_probs=129.0

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++|+|+|.+|+|||||+++|++..+...+.+|.+.++..  +...  .+.+.+|||||++.+...+..++..+|+++
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   95 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIV   95 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence            457999999999999999999999999887777887766543  3333  478999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHH
Q 027856           91 LVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAE-----RENTFFMETSALESMNVE  164 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~  164 (217)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+...  ...++......     ..++.++++||++|.|++
T Consensus        96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~  173 (188)
T 1zd9_A           96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIEKMNLSAIQDREICCYSISCKEKDNID  173 (188)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC--CCHHHHHHHhChhhhccCCeeEEEEECCCCCCHH
Confidence            9999999999999888888776532 258999999999999763  22333322221     134569999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027856          165 NAFTEVLTQIYR  176 (217)
Q Consensus       165 ~~~~~i~~~~~~  176 (217)
                      ++|++|.+.+.+
T Consensus       174 ~l~~~l~~~~~~  185 (188)
T 1zd9_A          174 ITLQWLIQHSKS  185 (188)
T ss_dssp             HHHHHHHHTCC-
T ss_pred             HHHHHHHHHHHh
Confidence            999999976643

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.97  E-value=4e-30  Score=183.86  Aligned_cols=156  Identities=18%  Similarity=0.353  Sum_probs=122.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|++|+|||||+++|+++.+.. +.+|.+..  ...+...  .+.+.+|||||++.+...+..+++++|++++|+
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEEECS--SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEEEEC--CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            589999999999999999999888764 44565532  3333333  378999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCccCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHHHHH
Q 027856           94 DVTRHVTFENVERWLKELRDH-TDSNIVIMLVGNKADLRHLRAVSTEDATAFAE-----RENTFFMETSALESMNVENAF  167 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~  167 (217)
                      |++++.+++.+..|+..+... ...+.|+++|+||+|+.+.  ...++......     ..+++++++||++|.|++++|
T Consensus        76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  153 (164)
T 1r8s_A           76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence            999999999988888877553 2357899999999999663  23333322211     134569999999999999999


Q ss_pred             HHHHHHHHH
Q 027856          168 TEVLTQIYR  176 (217)
Q Consensus       168 ~~i~~~~~~  176 (217)
                      ++|.+.+.+
T Consensus       154 ~~l~~~i~~  162 (164)
T 1r8s_A          154 DWLSNQLRN  162 (164)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHHHHhh
Confidence            999987653

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.97  E-value=1.3e-29  Score=182.34  Aligned_cols=159  Identities=18%  Similarity=0.317  Sum_probs=126.4

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++|+++|.+|+|||||+++|.++.+.. +.++.+..  ...+.+++  +.+.+|||||++.+...+..+++.+|+++
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   79 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFN--VETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVI   79 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEE--EEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccc--eEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence            346899999999999999999999988754 44565543  34444554  68999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHH-----HHcCCcEEEEecCCCCCHH
Q 027856           91 LVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFA-----ERENTFFMETSALESMNVE  164 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~  164 (217)
                      +|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+..  ...+.....     ...++.++++||++|.|++
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  157 (171)
T 1upt_A           80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM--TSSEMANSLGLPALKDRKWQIFKTSATKGTGLD  157 (171)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC--CHHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence            9999999999998888877765542 2589999999999997632  233332222     2245679999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027856          165 NAFTEVLTQIYR  176 (217)
Q Consensus       165 ~~~~~i~~~~~~  176 (217)
                      ++|+++.+.+.+
T Consensus       158 ~l~~~l~~~i~~  169 (171)
T 1upt_A          158 EAMEWLVETLKS  169 (171)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhh
Confidence            999999987753

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.97  E-value=1.9e-29  Score=186.18  Aligned_cols=156  Identities=19%  Similarity=0.242  Sum_probs=122.4

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++|+++|++|+|||||+++|.++.+.. +.+|.+..  ...+.+++  +.+.+|||||++.+...+..+++.+|+++
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   97 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   97 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence            346899999999999999999999988643 44565544  34555666  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH-----------------cCCcE
Q 027856           91 LVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAER-----------------ENTFF  152 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~  152 (217)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+  .+..+++.+++..                 .+..+
T Consensus        98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (198)
T 1f6b_A           98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  175 (198)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence            9999999999999988888876542 35799999999999975  5667777776652                 23569


Q ss_pred             EEEecCCCCCHHHHHHHHHHH
Q 027856          153 METSALESMNVENAFTEVLTQ  173 (217)
Q Consensus       153 ~~~Sa~~~~~i~~~~~~i~~~  173 (217)
                      +++||++|.|++++|++|.+.
T Consensus       176 ~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          176 FMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             EECBTTTTBSHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            999999999999999999754

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.97  E-value=5.5e-29  Score=182.56  Aligned_cols=156  Identities=17%  Similarity=0.233  Sum_probs=127.6

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++|+++|++|+|||||+++|.++.+.. +.+|.+..  ...+.+++  +.+.+|||||++.+...+..+++.+|+++
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   95 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV   95 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            345799999999999999999999988753 44565553  45556666  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH------------cCCcEEEEec
Q 027856           91 LVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAER------------ENTFFMETSA  157 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa  157 (217)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+  .+..+++.+.+..            .++.++++||
T Consensus        96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  173 (190)
T 1m2o_B           96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV  173 (190)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred             EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence            9999999999999988888876532 25799999999999976  4566666665442            3457999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 027856          158 LESMNVENAFTEVLTQ  173 (217)
Q Consensus       158 ~~~~~i~~~~~~i~~~  173 (217)
                      ++|.|++++|++|.+.
T Consensus       174 ~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          174 VMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             TTTBSHHHHHHHHHTT
T ss_pred             CcCCCHHHHHHHHHhh
Confidence            9999999999999753

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.96  E-value=1.8e-29  Score=183.64  Aligned_cols=158  Identities=20%  Similarity=0.350  Sum_probs=125.2

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      +....++|+++|.+|+|||||+++|++..+ ..+.++.+...  ..+.+++  +.+.+|||||++.+...+..++..+|+
T Consensus        17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~   91 (181)
T 2h17_A           17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEF   91 (181)
T ss_dssp             ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence            345689999999999999999999999987 44456665443  3444555  789999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHH-----HcCCcEEEEecCCCCC
Q 027856           89 ALLVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAE-----RENTFFMETSALESMN  162 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~  162 (217)
                      +++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+  ....++..+...     ..++.++++||++|.|
T Consensus        92 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~g  169 (181)
T 2h17_A           92 VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEG  169 (181)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT--CCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc--CCCHHHHHHHhCcccccCCceEEEEccCCCCcC
Confidence            999999999999999888888776542 35899999999999965  234444444332     2345799999999999


Q ss_pred             HHHHHHHHHHH
Q 027856          163 VENAFTEVLTQ  173 (217)
Q Consensus       163 i~~~~~~i~~~  173 (217)
                      ++++|++|.+.
T Consensus       170 i~~l~~~l~~~  180 (181)
T 2h17_A          170 LCQGLEWMMSR  180 (181)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHhh
Confidence            99999999754

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=9.4e-29  Score=180.71  Aligned_cols=158  Identities=20%  Similarity=0.355  Sum_probs=125.1

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++|+++|.+|+|||||+++|+++.+. .+.+|.+..  ...+.+++  +.+.+|||||++.+...+..++..+|+++
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   88 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   88 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            34699999999999999999999988776 455665533  33444555  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHH
Q 027856           91 LVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAE-----RENTFFMETSALESMNVE  164 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~  164 (217)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+  ....++..+...     ..++.++++||++|.|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (187)
T 1zj6_A           89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  166 (187)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC--CCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence            9999999999999988888886642 25799999999999975  334555544432     235679999999999999


Q ss_pred             HHHHHHHHHHH
Q 027856          165 NAFTEVLTQIY  175 (217)
Q Consensus       165 ~~~~~i~~~~~  175 (217)
                      ++|++|++.+.
T Consensus       167 ~l~~~l~~~~~  177 (187)
T 1zj6_A          167 QGLEWMMSRLK  177 (187)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHH
Confidence            99999998764

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.96  E-value=1.2e-28  Score=179.41  Aligned_cols=159  Identities=22%  Similarity=0.344  Sum_probs=124.9

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++|+++|++|+|||||+++|.+..+. .+.++.+..  ...+.+++  +.+.+|||||++.+...+..++..+|+++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   88 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFN--IKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI   88 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEE--EEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeE--EEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            45799999999999999999999988653 344565543  33444554  68999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCccCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHH
Q 027856           91 LVYDVTRHVTFENVERWLKELRDH-TDSNIVIMLVGNKADLRHLRAVSTEDATAFAE-----RENTFFMETSALESMNVE  164 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~  164 (217)
                      +|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+..  ..++..+...     ..++.++++||++|.|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (181)
T 1fzq_A           89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ  166 (181)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC--CHHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence            999999999999988888776543 23578999999999997632  3333333221     234569999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027856          165 NAFTEVLTQIYR  176 (217)
Q Consensus       165 ~~~~~i~~~~~~  176 (217)
                      ++|+++.+.+.+
T Consensus       167 ~l~~~l~~~~~~  178 (181)
T 1fzq_A          167 DGMNWVCKNVNA  178 (181)
T ss_dssp             HHHHHHHHTC--
T ss_pred             HHHHHHHHHHHh
Confidence            999999987654

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.96  E-value=6.6e-30  Score=186.50  Aligned_cols=163  Identities=17%  Similarity=0.363  Sum_probs=121.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC--cCCCCCcccceeEeEEEEEEE---CCeEEEEEEEeCCChhhhhhhhhhhhcCCc
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN--EFSLESKSTIGVEFATRSIRC---DDKIVKAQIWDTAGQERYRAITSAYYRGAV   87 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   87 (217)
                      .++|+++|++|||||||+++|++.  .+...+.+|.+.++....+.+   ++..+.+.+|||+|++.+..++..++..++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            479999999999999999999985  455556677777766655543   335678999999999999999999999999


Q ss_pred             EEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCC---HHHHHHHHHHcCCc----EEEEecCC
Q 027856           88 GALLVYDVTRH-VTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS---TEDATAFAERENTF----FMETSALE  159 (217)
Q Consensus        88 ~ii~v~d~~~~-~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa~~  159 (217)
                      ++++|||++++ .+++.+..|+..+.... .+.|+++|+||+|+.+.+.+.   .++...++...+++    ++++||++
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE  160 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence            99999999997 57888889999887654 478999999999997643221   23334555556776    99999999


Q ss_pred             CC-CHHHHHHHHHHHHHH
Q 027856          160 SM-NVENAFTEVLTQIYR  176 (217)
Q Consensus       160 ~~-~i~~~~~~i~~~~~~  176 (217)
                      |. ++.++++.|.+.+.+
T Consensus       161 ~~~~~~~l~~~i~~~~~~  178 (184)
T 2zej_A          161 ESDALAKLRKTIINESLN  178 (184)
T ss_dssp             CCHHHHHHHHHHHHHHHC
T ss_pred             CchhHHHHHHHHHHHHhc
Confidence            96 999999999877654

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.96  E-value=1.3e-29  Score=186.23  Aligned_cols=158  Identities=16%  Similarity=0.356  Sum_probs=119.6

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++|+++|++|+|||||+++|+++.+.. +.+|.+  .....+...+  +.+.+|||||++.+...+..++..+|+++
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  101 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI  101 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            457999999999999999999999887653 345554  3333444444  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHH
Q 027856           91 LVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAE-----RENTFFMETSALESMNVE  164 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~  164 (217)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.  ...++..+...     ..+++++++||++|.|++
T Consensus       102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~  179 (192)
T 2b6h_A          102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA--MPVSELTDKLGLQHLRSRTWYVQATCATQGTGLY  179 (192)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence            9999999999999888888775532 257999999999999663  23333322211     134569999999999999


Q ss_pred             HHHHHHHHHHH
Q 027856          165 NAFTEVLTQIY  175 (217)
Q Consensus       165 ~~~~~i~~~~~  175 (217)
                      ++|++|.+.+.
T Consensus       180 ~l~~~l~~~i~  190 (192)
T 2b6h_A          180 DGLDWLSHELS  190 (192)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            99999997764

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.96  E-value=5e-28  Score=191.76  Aligned_cols=162  Identities=31%  Similarity=0.514  Sum_probs=142.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..++|+++|.+|+|||||+++|+++.+...+.++.+... ...+.+++..+.+.+|||||++.+...+..++..+|++++
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~  232 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  232 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence            458999999999999999999999988777777765444 4556778888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCc------------cCCCHHHHHHHHHHcCC-cEEEEec
Q 027856           92 VYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHL------------RAVSTEDATAFAERENT-FFMETSA  157 (217)
Q Consensus        92 v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa  157 (217)
                      |||++++.+++.+. .|+..+..... +.|+++|+||+|+...            +.+..+++..++...++ +++++||
T Consensus       233 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  311 (332)
T 2wkq_A          233 CFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  311 (332)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence            99999999999886 68888877653 8999999999999653            46778889999999987 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q 027856          158 LESMNVENAFTEVLTQIY  175 (217)
Q Consensus       158 ~~~~~i~~~~~~i~~~~~  175 (217)
                      ++|.|++++|+.|.+.++
T Consensus       312 ~~~~gi~~l~~~l~~~~~  329 (332)
T 2wkq_A          312 LTQRGLKTVFDEAIRAVL  329 (332)
T ss_dssp             TTCTTHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHh
Confidence            999999999999998876

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.96  E-value=1.8e-28  Score=178.40  Aligned_cols=160  Identities=19%  Similarity=0.352  Sum_probs=125.7

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++|+++|++|+|||||+++|+++.+ ..+.++.+..  ...+.+++  +.+.+|||||++.+...+..++..+|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            4679999999999999999999998877 4455666643  33444554  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH-----cCCcEEEEecCCCCCHH
Q 027856           91 LVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAER-----ENTFFMETSALESMNVE  164 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~  164 (217)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.  ...++..+....     .++.++++||++|.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT  168 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence            9999999999999888888876543 358999999999999653  344444443322     23469999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027856          165 NAFTEVLTQIYRV  177 (217)
Q Consensus       165 ~~~~~i~~~~~~~  177 (217)
                      ++|++|.+.+.+.
T Consensus       169 ~l~~~l~~~~~~~  181 (183)
T 1moz_A          169 EGLDWLIDVIKEE  181 (183)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988754

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.96  E-value=6.1e-29  Score=183.12  Aligned_cols=162  Identities=18%  Similarity=0.219  Sum_probs=121.3

Q ss_pred             CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEE--EEEE-CCeEEEEEEEeCCChhhhhhhh---hh
Q 027856            8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATR--SIRC-DDKIVKAQIWDTAGQERYRAIT---SA   81 (217)
Q Consensus         8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~l~Dt~G~~~~~~~~---~~   81 (217)
                      .+....+||+++|.+|||||||++++.+... ..  ++.+.+....  ...+ ++..+.+.+|||||++.+....   ..
T Consensus        15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~   91 (196)
T 3llu_A           15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMS-PN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEM   91 (196)
T ss_dssp             -----CCEEEEEESTTSSHHHHHHHHHSCCC-GG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHH
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHHhcCC-Cc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccc
Confidence            4566789999999999999999998887533 22  3333333322  2233 2566899999999999987766   89


Q ss_pred             hhcCCcEEEEEEECCCh--hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC-------ccCCCHHHHHHHHH----Hc
Q 027856           82 YYRGAVGALLVYDVTRH--VTFENVERWLKELRDHTDSNIVIMLVGNKADLRH-------LRAVSTEDATAFAE----RE  148 (217)
Q Consensus        82 ~~~~~d~ii~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~-------~~~~~~~~~~~~~~----~~  148 (217)
                      +++++|++++|||++++  .++..+..|+..+... ..+.|+++|+||+|+..       .+.+..++...++.    ..
T Consensus        92 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  170 (196)
T 3llu_A           92 IFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKL  170 (196)
T ss_dssp             HHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred             ccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcC
Confidence            99999999999999997  6666666777766433 35899999999999754       23445555667777    66


Q ss_pred             CCcEEEEecCCCCCHHHHHHHHHHHH
Q 027856          149 NTFFMETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       149 ~~~~~~~Sa~~~~~i~~~~~~i~~~~  174 (217)
                      ++.|+++||++ .|++++|+.+++.+
T Consensus       171 ~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          171 HLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             CEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             CcceEEEEech-hhHHHHHHHHHHHh
Confidence            78899999999 99999999998764

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.96  E-value=3.4e-29  Score=183.33  Aligned_cols=160  Identities=18%  Similarity=0.298  Sum_probs=126.2

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++|+++|++|+|||||+++|.++.+.. +.+|.+..  ...+.+++  +.+.+|||||++.+...+..+++.+|+++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            467999999999999999999999887654 44555533  33444454  68999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHH-----HHcCCcEEEEecCCCCCHH
Q 027856           91 LVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFA-----ERENTFFMETSALESMNVE  164 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~  164 (217)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+..  ..++.....     ...+++++++||++|.|++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  172 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV  172 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence            9999999999998888877775532 3579999999999997632  233332222     2234579999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027856          165 NAFTEVLTQIYRV  177 (217)
Q Consensus       165 ~~~~~i~~~~~~~  177 (217)
                      ++|+++.+.+.+.
T Consensus       173 ~l~~~l~~~i~~~  185 (189)
T 2x77_A          173 EGMDWLVERLREQ  185 (189)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999887643

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.93  E-value=4.5e-31  Score=195.66  Aligned_cols=162  Identities=32%  Similarity=0.532  Sum_probs=136.4

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++|+++|.+|+|||||+++|+++.+...+.++.+... ...+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            4579999999999999999999999888777666664433 444556777788999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCcc------------CCCHHHHHHHHHHcCC-cEEEEe
Q 027856           91 LVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHLR------------AVSTEDATAFAERENT-FFMETS  156 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~S  156 (217)
                      +|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+..            .+..+++..++...++ +++++|
T Consensus       107 lv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS  185 (204)
T 3th5_A          107 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  185 (204)
Confidence            999999999999886 78888776543 78999999999997542            4555667777888887 899999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q 027856          157 ALESMNVENAFTEVLTQI  174 (217)
Q Consensus       157 a~~~~~i~~~~~~i~~~~  174 (217)
                      |++|.|++++|++|++.+
T Consensus       186 A~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          186 ALTQRGLKTVFDEAIRAV  203 (204)
Confidence            999999999999998765

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.95  E-value=3.4e-27  Score=177.77  Aligned_cols=168  Identities=19%  Similarity=0.161  Sum_probs=120.6

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh------hhh---hhhhhh
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ------ERY---RAITSA   81 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~------~~~---~~~~~~   81 (217)
                      ...++|+|+|.+|+|||||+++|++..+.....+..+.+.....+...+  ..+.+|||||.      +..   ...+..
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  104 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA  104 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence            4579999999999999999999999877533323333333333444444  68999999997      321   122334


Q ss_pred             hhcCCcEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHH---HHHHHHHHcC--CcEEE
Q 027856           82 YYRGAVGALLVYDVTRHVTFEN--VERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTE---DATAFAEREN--TFFME  154 (217)
Q Consensus        82 ~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~--~~~~~  154 (217)
                      ++..+|++++|+|++++.++..  ...|+..+.... .+.|+++|+||+|+.+.+.+..+   .+..++...+  +.+++
T Consensus       105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (228)
T 2qu8_A          105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS  183 (228)
T ss_dssp             HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred             hhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence            5788899999999999877642  234566555432 37899999999999876666554   4556666666  78999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHHHhhh
Q 027856          155 TSALESMNVENAFTEVLTQIYRVVSRK  181 (217)
Q Consensus       155 ~Sa~~~~~i~~~~~~i~~~~~~~~~~~  181 (217)
                      +||++|.|++++|++|.+.+.+.+...
T Consensus       184 ~SA~~g~gi~~l~~~l~~~i~~~~~~~  210 (228)
T 2qu8_A          184 FSTLTGVGVEQAKITACELLKNDQAES  210 (228)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             EecccCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998776544

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.95  E-value=1.1e-27  Score=171.78  Aligned_cols=153  Identities=18%  Similarity=0.203  Sum_probs=116.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhh------hhhhhhhc--
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYR------AITSAYYR--   84 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~--   84 (217)
                      .++|+++|++|+|||||+++|++..+.....++.+.+.....+.+++  ..+.+|||||+..+.      .+...++.  
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   80 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE   80 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence            48999999999999999999999876555445555555555666665  588999999987653      33455554  


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHH
Q 027856           85 GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVE  164 (217)
Q Consensus        85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  164 (217)
                      .+|++++|+|+++...   ...|+..+..   .+.|+++|+||+|+...+.+.. +.++++..++++++++||++|.|++
T Consensus        81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~  153 (165)
T 2wji_A           81 KPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIE  153 (165)
T ss_dssp             CCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred             CCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHH
Confidence            8999999999988643   3456666654   3789999999999865444432 3567777888999999999999999


Q ss_pred             HHHHHHHHHH
Q 027856          165 NAFTEVLTQI  174 (217)
Q Consensus       165 ~~~~~i~~~~  174 (217)
                      ++|+++.+.+
T Consensus       154 ~l~~~l~~~~  163 (165)
T 2wji_A          154 ELKKAISIAV  163 (165)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999998754

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.95  E-value=1.1e-28  Score=188.85  Aligned_cols=167  Identities=29%  Similarity=0.380  Sum_probs=123.1

Q ss_pred             CCCCCeeeEEEEEcCC---------CCCHHHHHHHHhh---CcCCCCCcccc-eeEeEEEE--------------EEECC
Q 027856            7 DDDYDYLFKVVLIGDS---------GVGKSNLLSRFTR---NEFSLESKSTI-GVEFATRS--------------IRCDD   59 (217)
Q Consensus         7 ~~~~~~~~~I~v~G~~---------~~GKSsli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~~   59 (217)
                      .......+||+|+|.+         |||||||+++|++   ..+...+.++. +.++....              ..+++
T Consensus        13 ~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   92 (255)
T 3c5h_A           13 NLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDC   92 (255)
T ss_dssp             TSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC------
T ss_pred             CCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCC
Confidence            3445678999999999         9999999999999   45555554443 33322211              12456


Q ss_pred             eEEEEEEEe-----------------------CCChhhhhhhhhhhhc---------------------CCcEEEEEEEC
Q 027856           60 KIVKAQIWD-----------------------TAGQERYRAITSAYYR---------------------GAVGALLVYDV   95 (217)
Q Consensus        60 ~~~~~~l~D-----------------------t~G~~~~~~~~~~~~~---------------------~~d~ii~v~d~   95 (217)
                      ..+.+.+||                       ++|++.+..++..++.                     ++|++|+|||+
T Consensus        93 ~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~  172 (255)
T 3c5h_A           93 VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV  172 (255)
T ss_dssp             ---CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred             cEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence            778999999                       5666666667777776                     79999999999


Q ss_pred             CCh--hhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH-cCCcEEEEecCCCCCHHHHHHHHH
Q 027856           96 TRH--VTFENVERWLKELRDH-TDSNIVIMLVGNKADLRHLRAVSTEDATAFAER-ENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        96 ~~~--~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~  171 (217)
                      +++  .+++.+..|+..+... ...+.|+++|+||+|+...+.+  +++.+++.. .++.++++||++|.|++++|++|+
T Consensus       173 t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~  250 (255)
T 3c5h_A          173 SRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLV  250 (255)
T ss_dssp             BC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHH
T ss_pred             CCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHH
Confidence            998  9999999999888765 3357999999999999654433  566777766 478899999999999999999998


Q ss_pred             HHHH
Q 027856          172 TQIY  175 (217)
Q Consensus       172 ~~~~  175 (217)
                      +.+.
T Consensus       251 ~~l~  254 (255)
T 3c5h_A          251 QLID  254 (255)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            8763

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.95  E-value=2.5e-27  Score=171.50  Aligned_cols=159  Identities=18%  Similarity=0.203  Sum_probs=121.2

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...++|+++|.+|+|||||+++|++..+...+.++.+.+.....+.+++.  .+.+|||||++.+...+..++..+|+++
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   83 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVI   83 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence            45789999999999999999999999887776666666666666667774  6789999999999988888999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHc-------C--CcEEEEecCCCC
Q 027856           91 LVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERE-------N--TFFMETSALESM  161 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~~~  161 (217)
                      +|+|++++......+ ++..+.   ..+.|+++|+||+|+.+.   ..++........       +  +.++++||++|.
T Consensus        84 ~v~d~~~~~~~~~~~-~l~~~~---~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  156 (178)
T 2lkc_A           84 LVVAADDGVMPQTVE-AINHAK---AANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKE  156 (178)
T ss_dssp             EEEETTCCCCHHHHH-HHHHHG---GGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSH
T ss_pred             EEEECCCCCcHHHHH-HHHHHH---hCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCC
Confidence            999998843322221 222222   247899999999999653   233333333222       2  479999999999


Q ss_pred             CHHHHHHHHHHHHHHHH
Q 027856          162 NVENAFTEVLTQIYRVV  178 (217)
Q Consensus       162 ~i~~~~~~i~~~~~~~~  178 (217)
                      |++++|++|.+.+...+
T Consensus       157 gv~~l~~~l~~~~~~~~  173 (178)
T 2lkc_A          157 GLDHLLEMILLVSEMEE  173 (178)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHhhhhhc
Confidence            99999999998776543

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.95  E-value=1.5e-27  Score=177.83  Aligned_cols=160  Identities=16%  Similarity=0.202  Sum_probs=113.6

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCe-EEEEEEEeCCChhhhhh-hhhhhhcCCcE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK-IVKAQIWDTAGQERYRA-ITSAYYRGAVG   88 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~   88 (217)
                      ...++|+++|++|+|||||+++|++..+...+. +.+.+...  +.+++. .+.+.+|||||++.+.. ++..+++.+|+
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   81 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT-SITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA   81 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCC-CCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccC-CcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence            456899999999999999999999998877664 33333333  555543 57899999999999987 78889999999


Q ss_pred             EEEEEECCChh-hHHHHHH-HHHHHHhh--cCCCCcEEEEEeCCCCCCccCCC--HHHHHHHHH----------------
Q 027856           89 ALLVYDVTRHV-TFENVER-WLKELRDH--TDSNIVIMLVGNKADLRHLRAVS--TEDATAFAE----------------  146 (217)
Q Consensus        89 ii~v~d~~~~~-s~~~~~~-~~~~l~~~--~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~----------------  146 (217)
                      +++|||+++.. ++..... |...+...  ...+.|+++|+||+|+.......  .+.+.....                
T Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~  161 (214)
T 2fh5_B           82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS  161 (214)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred             EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence            99999999854 3544443 44444432  23578999999999997643210  111111111                


Q ss_pred             -----------------Hc--CCcEEEEecCCC------CCHHHHHHHHHHH
Q 027856          147 -----------------RE--NTFFMETSALES------MNVENAFTEVLTQ  173 (217)
Q Consensus       147 -----------------~~--~~~~~~~Sa~~~------~~i~~~~~~i~~~  173 (217)
                                       ..  ++.|+++||++|      .|++++|++|.+.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                             11  566999999999      9999999999865

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.95  E-value=7.3e-27  Score=183.27  Aligned_cols=160  Identities=21%  Similarity=0.306  Sum_probs=126.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCC---CCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhh-----hhhhhhhh
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFS---LESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY-----RAITSAYY   83 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----~~~~~~~~   83 (217)
                      ..+||+++|.+|+|||||+++|+++...   ..+.+|.+....  .+.+++ .+.+.+|||||++.+     ...+..++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   78 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF   78 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence            4689999999999999999999987432   234455554443  444444 479999999999888     67888899


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCC--ccC----CCHHHHHHHHHHcC---CcE
Q 027856           84 RGAVGALLVYDVTRHVTFENVERWLKELRDHT--DSNIVIMLVGNKADLRH--LRA----VSTEDATAFAEREN---TFF  152 (217)
Q Consensus        84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~~  152 (217)
                      +++|++++|||++++.+++.+..|...+....  .++.|+++|+||+|+..  .+.    +..+++.+++..++   +++
T Consensus        79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~  158 (307)
T 3r7w_A           79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG  158 (307)
T ss_dssp             TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence            99999999999999999999877765554432  35899999999999976  333    45577888888887   689


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHH
Q 027856          153 METSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       153 ~~~Sa~~~~~i~~~~~~i~~~~~  175 (217)
                      +++||++ .++.++|..+++.+.
T Consensus       159 ~~tSa~~-~~i~e~~~~iv~~li  180 (307)
T 3r7w_A          159 FPTSIWD-ESLYKAWSQIVCSLI  180 (307)
T ss_dssp             EECCTTS-SHHHHHHHHHHHTTC
T ss_pred             EEeeecC-ChHHHHHHHHHHHHc
Confidence            9999999 889999998886543

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.94  E-value=1.1e-26  Score=170.70  Aligned_cols=160  Identities=16%  Similarity=0.178  Sum_probs=111.8

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCC----------hhhhhhh
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAG----------QERYRAI   78 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~~   78 (217)
                      +....++|+++|.+|+|||||+++|++..+...+.++.+.+........++   .+.+|||||          ++.+...
T Consensus        19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~   95 (195)
T 1svi_A           19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRM   95 (195)
T ss_dssp             CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence            445689999999999999999999999886665556665555555555554   689999999          7778877


Q ss_pred             hhhhhcCC---cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCH--HHHHH-HHHHcCCcE
Q 027856           79 TSAYYRGA---VGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVST--EDATA-FAERENTFF  152 (217)
Q Consensus        79 ~~~~~~~~---d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~-~~~~~~~~~  152 (217)
                      +..++..+   |++++|+|++++.+..... ++..+..   .+.|+++|+||+|+...+++..  +++.+ +....+..+
T Consensus        96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  171 (195)
T 1svi_A           96 IETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDEL  171 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEE
T ss_pred             HHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCce
Confidence            88887766   9999999999887766532 2233332   3789999999999976443322  22222 222245789


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHH
Q 027856          153 METSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       153 ~~~Sa~~~~~i~~~~~~i~~~~~  175 (217)
                      +++||++|.|++++|++|.+.+.
T Consensus       172 ~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          172 ILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHT
T ss_pred             EEEEccCCCCHHHHHHHHHHHhc
Confidence            99999999999999999987653

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.94  E-value=5.6e-27  Score=171.35  Aligned_cols=157  Identities=22%  Similarity=0.231  Sum_probs=116.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCC-----------hhhhhhhhhhh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAG-----------QERYRAITSAY   82 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G-----------~~~~~~~~~~~   82 (217)
                      ++|+++|.+|+|||||+++|++..+...+.++.+..  ...+.+.    .+.+|||||           ++.+...+..+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~--~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK--IIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS--CEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccce--eEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            689999999999999999999998776665554433  3333333    678999999           67777777777


Q ss_pred             hcC-CcEEEEEEECCChhhHHHH-HHHHHH---------HHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCc
Q 027856           83 YRG-AVGALLVYDVTRHVTFENV-ERWLKE---------LRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTF  151 (217)
Q Consensus        83 ~~~-~d~ii~v~d~~~~~s~~~~-~~~~~~---------l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  151 (217)
                      ++. ++++++++++.+..++..+ ..|...         +......+.|+++|+||+|+....   .++.++++...+.+
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~  152 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP  152 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence            776 6666666666666666665 455432         122222479999999999997643   55677788877764


Q ss_pred             -------EEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 027856          152 -------FMETSALESMNVENAFTEVLTQIYRVVS  179 (217)
Q Consensus       152 -------~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  179 (217)
                             ++++||++|.|++++|+++.+.+.+...
T Consensus       153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~  187 (190)
T 2cxx_A          153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG  187 (190)
T ss_dssp             GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred             hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence                   7999999999999999999998876543

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.94  E-value=2.1e-26  Score=168.12  Aligned_cols=157  Identities=18%  Similarity=0.201  Sum_probs=123.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhh------hhhhhhhc-
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYR------AITSAYYR-   84 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~-   84 (217)
                      ..++|+++|++|+|||||+++|++..+.....++.+.+.....+.+++  ..+.+|||||++.+.      .++..++. 
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   83 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   83 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence            468999999999999999999999776555556666666666676665  688999999987653      34555554 


Q ss_pred             -CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCH
Q 027856           85 -GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNV  163 (217)
Q Consensus        85 -~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  163 (217)
                       .+|++++|+|.++   ++....|+..+..   .+.|+++|+||+|+.....+. .+..+++...++.++++||+++.|+
T Consensus        84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v  156 (188)
T 2wjg_A           84 EKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGI  156 (188)
T ss_dssp             HCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSH
T ss_pred             cCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCH
Confidence             5999999999875   3445567776655   378999999999997644443 3567777888899999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027856          164 ENAFTEVLTQIYRV  177 (217)
Q Consensus       164 ~~~~~~i~~~~~~~  177 (217)
                      +++|+++.+.+.+.
T Consensus       157 ~~l~~~i~~~~~~~  170 (188)
T 2wjg_A          157 EELKKAISIAVKDK  170 (188)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999877543

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.94  E-value=4.7e-26  Score=180.18  Aligned_cols=158  Identities=18%  Similarity=0.333  Sum_probs=118.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..++|+|+|.+|+|||||+++|++..+.... +|.+...  ..+...+  +.+.||||||++.+..++..+++.+|++|+
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil  238 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF  238 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEE--EEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEE--EEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            4579999999999999999999998865443 4544433  3333444  789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH-----cCCcEEEEecCCCCCHHH
Q 027856           92 VYDVTRHVTFENVERWLKELRDH-TDSNIVIMLVGNKADLRHLRAVSTEDATAFAER-----ENTFFMETSALESMNVEN  165 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~  165 (217)
                      |||++++.++..+..|+..+... ...++|+++|+||+|+.+..  ..++.......     .+++++++||++|.|+++
T Consensus       239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e  316 (329)
T 3o47_A          239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYE  316 (329)
T ss_dssp             EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred             EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence            99999999999887766665443 33589999999999997632  33333332222     245699999999999999


Q ss_pred             HHHHHHHHHHH
Q 027856          166 AFTEVLTQIYR  176 (217)
Q Consensus       166 ~~~~i~~~~~~  176 (217)
                      +|++|++.+.+
T Consensus       317 l~~~l~~~l~~  327 (329)
T 3o47_A          317 GLDWLSNQLRN  327 (329)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHHh
Confidence            99999987653

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.94  E-value=1.2e-25  Score=176.35  Aligned_cols=166  Identities=18%  Similarity=0.118  Sum_probs=125.5

Q ss_pred             CCCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCc-ccceeEeEEEEEEECCeEEEEEEEeCCChhh----------
Q 027856            6 ADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEFATRSIRCDDKIVKAQIWDTAGQER----------   74 (217)
Q Consensus         6 ~~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------   74 (217)
                      ...++...-.|+++|.+|+|||||+|+|++..+..... +..+........... ....+.||||||...          
T Consensus         3 ~~~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~   81 (308)
T 3iev_A            3 HHHHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHS   81 (308)
T ss_dssp             ----CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHH
T ss_pred             CCCCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHH
Confidence            34566778899999999999999999999998764332 222222223333333 136899999999733          


Q ss_pred             hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcC--CcE
Q 027856           75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAEREN--TFF  152 (217)
Q Consensus        75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~  152 (217)
                      +......++..+|++++|+|++++.+..+...|+..+...   +.|+++|+||+|+........+....+....+  ..+
T Consensus        82 ~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i  158 (308)
T 3iev_A           82 MVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEI  158 (308)
T ss_dssp             HHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCE
T ss_pred             HHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeE
Confidence            3456677889999999999999988888777777777663   78999999999997434555666777777765  779


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHH
Q 027856          153 METSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       153 ~~~Sa~~~~~i~~~~~~i~~~~~  175 (217)
                      +++||++|.|++++|+++.+.+.
T Consensus       159 ~~vSA~~g~gv~~L~~~l~~~l~  181 (308)
T 3iev_A          159 VPISALKGANLDELVKTILKYLP  181 (308)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHSC
T ss_pred             EEEeCCCCCCHHHHHHHHHHhCc
Confidence            99999999999999999987763

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.94  E-value=6.9e-26  Score=161.20  Aligned_cols=150  Identities=18%  Similarity=0.189  Sum_probs=107.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCChhh-------hhhhhhhhhcC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER-------YRAITSAYYRG   85 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~   85 (217)
                      ++|+++|++|+|||||+++|.+..+.. ...++.+.+.....+..++.  .+.+|||||...       +...+..++..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            689999999999999999999987542 23334444455555666664  789999999876       44556678899


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCC-cEEEEecCCCCCHH
Q 027856           86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENT-FFMETSALESMNVE  164 (217)
Q Consensus        86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~  164 (217)
                      +|++++|+|++++.+... ..+...+..   .+.|+++|+||+|+.+..    +++.+++ ..++ .++++||++|.|++
T Consensus        80 ~~~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~  150 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD-YEVAEYLRR---KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE  150 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH-HHHHHHHHH---HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred             CCEEEEEEECCCcccHhH-HHHHHHHHh---cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence            999999999998644322 122222322   378999999999997642    2334444 5666 79999999999999


Q ss_pred             HHHHHHHHHH
Q 027856          165 NAFTEVLTQI  174 (217)
Q Consensus       165 ~~~~~i~~~~  174 (217)
                      ++|+++.+.+
T Consensus       151 ~l~~~l~~~l  160 (161)
T 2dyk_A          151 ELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999998753

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.94  E-value=7e-26  Score=173.40  Aligned_cols=156  Identities=17%  Similarity=0.141  Sum_probs=120.8

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhh------hhhhhh-
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRA------ITSAYY-   83 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~-   83 (217)
                      ...++|+++|++|+|||||+++|++..+.....+..+.+.....+...+  ..+.+|||||...+..      ....++ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            4578999999999999999999999876554445555555555555555  6899999999766543      224454 


Q ss_pred             -cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCC
Q 027856           84 -RGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMN  162 (217)
Q Consensus        84 -~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  162 (217)
                       ..+|++++|+|+++.++.   ..|...+...   +.|+++|+||+|+...+.+.. +...++..++++++++||++|.|
T Consensus        81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~~---~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~g  153 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQS---LYLLLEILEM---EKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEG  153 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHH---HHHHHHHHTT---TCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTT
T ss_pred             hcCCCEEEEEeCCCchhhH---HHHHHHHHhc---CCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcC
Confidence             589999999999987543   3455555543   799999999999976544442 36778888899999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027856          163 VENAFTEVLTQIY  175 (217)
Q Consensus       163 i~~~~~~i~~~~~  175 (217)
                      ++++|+++.+.+.
T Consensus       154 i~el~~~i~~~~~  166 (258)
T 3a1s_A          154 LEELKEKIVEYAQ  166 (258)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999987653

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.93  E-value=1.4e-25  Score=164.45  Aligned_cols=163  Identities=17%  Similarity=0.194  Sum_probs=116.8

Q ss_pred             CCCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCC----------hhhh
Q 027856            6 ADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAG----------QERY   75 (217)
Q Consensus         6 ~~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~   75 (217)
                      ...+....++|+++|.+|+|||||+++|++..... ..++.+.+........+.   .+.+|||||          ++.+
T Consensus        16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~   91 (195)
T 3pqc_A           16 GDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAF-VSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLW   91 (195)
T ss_dssp             TCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSC-CCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHH
T ss_pred             hhCCCCCCeEEEEECCCCCCHHHHHHHHHcCcccc-ccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHH
Confidence            34455678999999999999999999999988433 334544444444444444   577999999          6677


Q ss_pred             hhhhhhhhcCC---cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCcc--CCCHHHHHHHHHHc-C
Q 027856           76 RAITSAYYRGA---VGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLR--AVSTEDATAFAERE-N  149 (217)
Q Consensus        76 ~~~~~~~~~~~---d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~-~  149 (217)
                      ...+..++..+   |++++|+|+++..+.... .+...+...   +.|+++|+||+|+.+..  ....+++..++... +
T Consensus        92 ~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~~---~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  167 (195)
T 3pqc_A           92 KRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDL-MMVEWMKSL---NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGE  167 (195)
T ss_dssp             HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHHT---TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCC
T ss_pred             HHHHHHHHhcCcCceEEEEEecCCCCCCHHHH-HHHHHHHHc---CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCC
Confidence            77777777665   999999999876443322 222223222   78999999999997532  22334455555553 4


Q ss_pred             CcEEEEecCCCCCHHHHHHHHHHHHHH
Q 027856          150 TFFMETSALESMNVENAFTEVLTQIYR  176 (217)
Q Consensus       150 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~  176 (217)
                      +.++++||++|.|++++|++|.+.+.+
T Consensus       168 ~~~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          168 YTIIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             SCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             CceEEEecCCCCCHHHHHHHHHHHhhc
Confidence            689999999999999999999987753

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.93  E-value=2.8e-27  Score=184.50  Aligned_cols=163  Identities=17%  Similarity=0.187  Sum_probs=122.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCC---CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhh---hhhhhhcCCcE
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSL---ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRA---ITSAYYRGAVG   88 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~d~   88 (217)
                      ||+++|..|+|||||++++.++.++.   .+.+|.+.+...    ++ ..+.+++|||+|+++|..   .+..+++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            68999999999999999988764432   245677666543    22 347999999999999964   46889999999


Q ss_pred             EEEEEECCCh--hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCc-------cCCCHHHHHHHHHH----cCCcEEEE
Q 027856           89 ALLVYDVTRH--VTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL-------RAVSTEDATAFAER----ENTFFMET  155 (217)
Q Consensus        89 ii~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~~  155 (217)
                      +|+|||++++  .+...+..|+..+... .++.|+++++||+|+...       +.+..++++++++.    .++.|+++
T Consensus        76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT  154 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT  154 (331)
T ss_dssp             EEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence            9999999997  3334444445555443 358999999999999763       24555666667765    57889999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHHhhhhhc
Q 027856          156 SALESMNVENAFTEVLTQIYRVVSRKALE  184 (217)
Q Consensus       156 Sa~~~~~i~~~~~~i~~~~~~~~~~~~~~  184 (217)
                      ||++ .++.++|..+++.+......-+..
T Consensus       155 SAkd-~nV~eAFs~iv~~li~~~~~le~~  182 (331)
T 3r7w_B          155 SIFD-HSIYEAFSRIVQKLIPELSFLENM  182 (331)
T ss_dssp             CSSS-SHHHHHHHHHHTTSSTTHHHHHHH
T ss_pred             ccCC-CcHHHHHHHHHHHHHhhHHHHHHH
Confidence            9998 589999999998877655544333

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.93  E-value=2.6e-26  Score=165.72  Aligned_cols=154  Identities=21%  Similarity=0.201  Sum_probs=113.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhh----h--h--hhhh
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYR----A--I--TSAY   82 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----~--~--~~~~   82 (217)
                      ..++|+++|.+|+|||||+++|.+..... ...++.+.+.....+.+++.  .+.+|||||.+.+.    .  .  ...+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            45899999999999999999999876532 22344445555666777764  57899999975321    1  1  1235


Q ss_pred             hcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCC
Q 027856           83 YRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMN  162 (217)
Q Consensus        83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  162 (217)
                      ++.+|++++|+|++++.+++. ..|+..+......++|+++|+||+|+.+...       .++...+.+++++||++|.|
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g  152 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG  152 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence            789999999999999887653 4677777666555799999999999854211       11122456799999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027856          163 VENAFTEVLTQIY  175 (217)
Q Consensus       163 i~~~~~~i~~~~~  175 (217)
                      ++++|++|.+.+.
T Consensus       153 v~~l~~~l~~~~~  165 (172)
T 2gj8_A          153 VDVLRNHLKQSMG  165 (172)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999987653

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.93  E-value=2.7e-26  Score=192.69  Aligned_cols=164  Identities=21%  Similarity=0.257  Sum_probs=124.8

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEE------E--EECCeEEEEEEEeCCChhhhhhhhh
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRS------I--RCDDKIVKAQIWDTAGQERYRAITS   80 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~l~Dt~G~~~~~~~~~   80 (217)
                      .....+||+++|.+|||||||+++|++..+...+.+|.+.+.....      +  ..++..+.+.+|||||++.+..++.
T Consensus        37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~  116 (535)
T 3dpu_A           37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ  116 (535)
T ss_dssp             BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence            3456799999999999999999999999988777788777665442      1  1123357899999999999999999


Q ss_pred             hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCC
Q 027856           81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALES  160 (217)
Q Consensus        81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  160 (217)
                      .+++.+|++++|+|+++.   +.+..|+..+.... .+.|+++|+||+|+...+.+..++++..+...+++++++||++|
T Consensus       117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g  192 (535)
T 3dpu_A          117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNG  192 (535)
T ss_dssp             HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred             HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcc
Confidence            999999999999999765   44567888887765 37999999999999887778888888888888999999999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q 027856          161 MNVENAFTEVLTQIYR  176 (217)
Q Consensus       161 ~~i~~~~~~i~~~~~~  176 (217)
                      .|++++|+.+.+.+.+
T Consensus       193 ~gi~eL~~~l~~~~~~  208 (535)
T 3dpu_A          193 DGVESIAKSLKSAVLH  208 (535)
T ss_dssp             --CTTHHHHHHHHHTC
T ss_pred             cCHHHHHHHHHHHHhc
Confidence            9999999999987764

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.93  E-value=1.7e-25  Score=167.75  Aligned_cols=167  Identities=15%  Similarity=0.117  Sum_probs=113.3

Q ss_pred             CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEEC-CeEEEEEEEeCCC----------hhhhh
Q 027856            8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCD-DKIVKAQIWDTAG----------QERYR   76 (217)
Q Consensus         8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G----------~~~~~   76 (217)
                      .+....++|+|+|.+|+|||||+++|++.........+.+.+.......+. .....+.||||||          .+.+.
T Consensus        24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~  103 (223)
T 4dhe_A           24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE  103 (223)
T ss_dssp             SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred             CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence            344567999999999999999999999987322222333333333334443 3346889999999          45555


Q ss_pred             hhhhhhhcC---CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC--CHHHHHHHHHH----
Q 027856           77 AITSAYYRG---AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV--STEDATAFAER----  147 (217)
Q Consensus        77 ~~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~----  147 (217)
                      .....++..   +|++++|+|++++.+.. ...++..+..   .+.|+++|+||+|+......  ..++..+....    
T Consensus       104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~  179 (223)
T 4dhe_A          104 QLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDA  179 (223)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhc
Confidence            666666655   78899999998764422 2345555554   37899999999999763321  11222222222    


Q ss_pred             ---cCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 027856          148 ---ENTFFMETSALESMNVENAFTEVLTQIYRVV  178 (217)
Q Consensus       148 ---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  178 (217)
                         .+.+++++||++|.|++++|++|.+.+....
T Consensus       180 ~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~  213 (223)
T 4dhe_A          180 GYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA  213 (223)
T ss_dssp             TCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred             ccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence               4567999999999999999999998876543

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.93  E-value=1e-25  Score=172.21  Aligned_cols=151  Identities=17%  Similarity=0.145  Sum_probs=117.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhh----------hhhhhh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRA----------ITSAYY   83 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~~~   83 (217)
                      .+|+++|.+|||||||+|+|++........++.+.+.....+.+++.  .+.+|||||...+..          ....++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            58999999999999999999998766555566677777777777774  889999999765542          455666


Q ss_pred             --cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCC
Q 027856           84 --RGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESM  161 (217)
Q Consensus        84 --~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  161 (217)
                        ..+|++++|+|+++.+...   .+...+..   .+.|+++|+||+|+...+.... ....+....+++++++||++|.
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~---~l~~~l~~---~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~  152 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHL---YLTSQLFE---LGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNI  152 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHH---HHHHHHTT---SCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTB
T ss_pred             hhCCCCEEEEEeeCCCchhHH---HHHHHHHH---cCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCC
Confidence              8999999999999865443   23333333   3799999999999865433322 2445677789999999999999


Q ss_pred             CHHHHHHHHHHH
Q 027856          162 NVENAFTEVLTQ  173 (217)
Q Consensus       162 ~i~~~~~~i~~~  173 (217)
                      |++++|++|.+.
T Consensus       153 gi~el~~~i~~~  164 (256)
T 3iby_A          153 GIPALQQSLLHC  164 (256)
T ss_dssp             SHHHHHHHHHTC
T ss_pred             CHHHHHHHHHhh
Confidence            999999999764

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.93  E-value=1.6e-25  Score=172.40  Aligned_cols=153  Identities=17%  Similarity=0.158  Sum_probs=114.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhh------hhhhhhhc-
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYR------AITSAYYR-   84 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~-   84 (217)
                      ..++|+++|++|||||||+++|++........+..+  .......+.. ...+.+|||||...+.      .+...++. 
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~t--v~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVT--VERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCC--CSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCc--EEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            358999999999999999999999764433334333  3333333444 5689999999987664      44555664 


Q ss_pred             -CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCH
Q 027856           85 -GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNV  163 (217)
Q Consensus        85 -~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  163 (217)
                       .+|++++|+|+++.+..   ..|...+..   .+.|+++|+||+|+...+.+. .+...++..++++++++||++|.|+
T Consensus        79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi  151 (272)
T 3b1v_A           79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV  151 (272)
T ss_dssp             TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred             CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence             69999999999886543   345555554   389999999999996544443 3456777888999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027856          164 ENAFTEVLTQI  174 (217)
Q Consensus       164 ~~~~~~i~~~~  174 (217)
                      +++|+++.+.+
T Consensus       152 ~el~~~i~~~~  162 (272)
T 3b1v_A          152 DQVVKKAAHTT  162 (272)
T ss_dssp             HHHHHHHHHSC
T ss_pred             HHHHHHHHHHH
Confidence            99999998654

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.92  E-value=8.6e-25  Score=168.75  Aligned_cols=155  Identities=20%  Similarity=0.152  Sum_probs=120.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhh------hhhhhh--c
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRA------ITSAYY--R   84 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~--~   84 (217)
                      .++|+++|++|+|||||+++|++..+.....++.+.+.....+.+.+.  .+.+|||||...+..      ....++  .
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   80 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILDG   80 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence            589999999999999999999998876556667777777777777764  689999999766544      455555  7


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHH
Q 027856           85 GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVE  164 (217)
Q Consensus        85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  164 (217)
                      ++|++++|+|+++...   ...|...+....  ..|+++|+||+|+.+.+..... ...+...++++++++||++|.|+.
T Consensus        81 ~~d~vi~v~D~~~~~~---~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi~  154 (271)
T 3k53_A           81 NADVIVDIVDSTCLMR---NLFLTLELFEME--VKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGVE  154 (271)
T ss_dssp             CCSEEEEEEEGGGHHH---HHHHHHHHHHTT--CCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTHH
T ss_pred             CCcEEEEEecCCcchh---hHHHHHHHHhcC--CCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCHH
Confidence            8999999999988642   234444444431  3999999999998654333332 667778889999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027856          165 NAFTEVLTQIY  175 (217)
Q Consensus       165 ~~~~~i~~~~~  175 (217)
                      ++|+.+.+.+.
T Consensus       155 ~l~~~i~~~~~  165 (271)
T 3k53_A          155 ELKRMIALMAE  165 (271)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999987754

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.92  E-value=4.9e-25  Score=170.23  Aligned_cols=153  Identities=16%  Similarity=0.142  Sum_probs=115.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhh----------hhhhhh
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYR----------AITSAY   82 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~~~   82 (217)
                      .++|+++|.+|+|||||+|+|++..+.....++.+.+.....+...+  ..+.+|||||...+.          .....+
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            58999999999999999999999886555556666666666666655  467899999976554          222333


Q ss_pred             h--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCC
Q 027856           83 Y--RGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALES  160 (217)
Q Consensus        83 ~--~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  160 (217)
                      +  ..+|++++|+|+++.+...   .+...+...   +.|+++|+||+|+.+.+... .....+....+++++++||++|
T Consensus        81 ~~~~~~d~ii~VvD~~~~~~~~---~~~~~l~~~---~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~g  153 (274)
T 3i8s_A           81 ILSGDADLLINVVDASNLERNL---YLTLQLLEL---GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTRG  153 (274)
T ss_dssp             HHHTCCSEEEEEEEGGGHHHHH---HHHHHHHHH---TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGGG
T ss_pred             HhhcCCCEEEEEecCCChHHHH---HHHHHHHhc---CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCCC
Confidence            3  7999999999998865443   344444443   78999999999986543322 1245667778899999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 027856          161 MNVENAFTEVLTQI  174 (217)
Q Consensus       161 ~~i~~~~~~i~~~~  174 (217)
                      .|++++|++|.+.+
T Consensus       154 ~gi~el~~~i~~~~  167 (274)
T 3i8s_A          154 RGIEALKLAIDRYK  167 (274)
T ss_dssp             HHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHHH
Confidence            99999999987654

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.91  E-value=1.7e-25  Score=167.19  Aligned_cols=148  Identities=18%  Similarity=0.262  Sum_probs=105.7

Q ss_pred             CCCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCC---CcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhh
Q 027856            6 ADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLE---SKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAY   82 (217)
Q Consensus         6 ~~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~   82 (217)
                      ........++|+++|++|+|||||+++|++..+...   +.++.+.++         ....+.+|||||++.+...+..+
T Consensus         5 ~~~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~   75 (218)
T 1nrj_B            5 GIKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDY   75 (218)
T ss_dssp             -----CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHH
T ss_pred             CCCccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHH
Confidence            334456679999999999999999999999886542   333332221         33578999999999998888888


Q ss_pred             hcC----CcEEEEEEECC-ChhhHHHHHHHHHHHHhh----cCCCCcEEEEEeCCCCCCccCCC------HHHHHHHHHH
Q 027856           83 YRG----AVGALLVYDVT-RHVTFENVERWLKELRDH----TDSNIVIMLVGNKADLRHLRAVS------TEDATAFAER  147 (217)
Q Consensus        83 ~~~----~d~ii~v~d~~-~~~s~~~~~~~~~~l~~~----~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~~  147 (217)
                      +..    +|++++|+|++ ++.++..+..|+..+...    ...+.|+++|+||+|+.....+.      .+++..++..
T Consensus        76 ~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~  155 (218)
T 1nrj_B           76 LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIER  155 (218)
T ss_dssp             HHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHH
Confidence            877    89999999999 888888887877777554    33589999999999997754433      3445666666


Q ss_pred             cCCcEEEEecCCCCC
Q 027856          148 ENTFFMETSALESMN  162 (217)
Q Consensus       148 ~~~~~~~~Sa~~~~~  162 (217)
                      .+..++++||++|.+
T Consensus       156 ~~~~~~~~Sa~~~~~  170 (218)
T 1nrj_B          156 RKKSLNEVERKINEE  170 (218)
T ss_dssp             HHHHHHC--------
T ss_pred             Hhccccccccccccc
Confidence            777899999998865

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.91  E-value=3.5e-24  Score=175.62  Aligned_cols=161  Identities=17%  Similarity=0.197  Sum_probs=117.4

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCC-CCCcccceeEeEEEEEEECCeEEEEEEEeCCCh----------hhhhhhh
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ----------ERYRAIT   79 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~~   79 (217)
                      +..++|+++|.+|+|||||+|+|++.... ....++.+.+.....+.+++.  .+.+|||||+          +.|....
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence            45799999999999999999999998764 233344445555555666664  5899999997          4454443


Q ss_pred             h-hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHH-HH----cCCcEE
Q 027856           80 S-AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFA-ER----ENTFFM  153 (217)
Q Consensus        80 ~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~~----~~~~~~  153 (217)
                      . .++..+|++++|+|++++.+.++. .|...+..   .++|+++|+||+|+.+.+....++..+.. ..    .+++++
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~  326 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL  326 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence            3 477889999999999998887765 46666554   37999999999999875554444443322 22    367899


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHH
Q 027856          154 ETSALESMNVENAFTEVLTQIYRV  177 (217)
Q Consensus       154 ~~Sa~~~~~i~~~~~~i~~~~~~~  177 (217)
                      ++||++|.|++++|+.+.+.+.+.
T Consensus       327 ~~SA~tg~~v~~l~~~i~~~~~~~  350 (436)
T 2hjg_A          327 FMSALTKKRIHTLMPAIIKASENH  350 (436)
T ss_dssp             ECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             EEecccCCCHHHHHHHHHHHHHHh
Confidence            999999999999999999877654

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.91  E-value=4.4e-25  Score=179.04  Aligned_cols=190  Identities=17%  Similarity=0.154  Sum_probs=130.6

Q ss_pred             CCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhh-------
Q 027856            7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAI-------   78 (217)
Q Consensus         7 ~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------   78 (217)
                      +.+....++|+++|.+|+|||||+++|++..+.. ...+..+.+.....+.+.+.. .+.+|||||++.+...       
T Consensus        28 ~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~  106 (423)
T 3qq5_A           28 LPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEK  106 (423)
T ss_dssp             C---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHH
T ss_pred             cCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHH
Confidence            3455678999999999999999999999988642 333444455555666665542 8899999998766443       


Q ss_pred             hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecC
Q 027856           79 TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSAL  158 (217)
Q Consensus        79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  158 (217)
                      ...++..+|++++|+|++...   ....|+..+...   +.|+++|+||+|+......  +..+++...++++++++||+
T Consensus       107 ~~~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAk  178 (423)
T 3qq5_A          107 ARRVFYRADCGILVTDSAPTP---YEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSAL  178 (423)
T ss_dssp             HHHHHTSCSEEEEECSSSCCH---HHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSC
T ss_pred             HHHHHhcCCEEEEEEeCCChH---HHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECC
Confidence            355788999999999983332   235677777665   8899999999999775443  55666666778899999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceeeecccCcccccc
Q 027856          159 ESMNVENAFTEVLTQIYRVVSRKALEIGDDPAALPKGQTINVGTKDDVSAVK  210 (217)
Q Consensus       159 ~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (217)
                      +|.|++++|++|.+.+.+.     .+..-.....++++.+-+..+.+...+|
T Consensus       179 tg~gI~eL~~~L~~~l~~~-----~e~~l~~dLv~~gd~v~lv~pid~~~pk  225 (423)
T 3qq5_A          179 QKKGFDDIGKTISEILPGD-----EEIPYLGDLIDGGDLVILVVPIDLGAPK  225 (423)
T ss_dssp             CTTSTTTHHHHHHHHSCCC-----CCCCSCSCCCCTTCCEEEECCCSCCSST
T ss_pred             CCCCHHHHHHHHHHhhhhh-----ccCcchhhccccCceEEEEeeccccCcC
Confidence            9999999999999877543     1111122356667777776666555543

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.91  E-value=5.6e-23  Score=164.39  Aligned_cols=163  Identities=18%  Similarity=0.199  Sum_probs=121.6

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhh---------hhhhh
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYR---------AITSA   81 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~   81 (217)
                      ...++|+++|.+|+|||||+++|++........+..+.......+...+  ..+.+|||||.....         .....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            4568999999999999999999999875332223333333334444443  578999999964321         12224


Q ss_pred             hhcCCcEEEEEEECCChh--hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCC
Q 027856           82 YYRGAVGALLVYDVTRHV--TFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALE  159 (217)
Q Consensus        82 ~~~~~d~ii~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  159 (217)
                      +...+|++++|+|++++.  +++....|+..+..... +.|+++|+||+|+.....  .++...++...+.+++++||++
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~  319 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEEN--IKRLEKFVKEKGLNPIKISALK  319 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHH--HHHHHHHHHHTTCCCEECBTTT
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHH--HHHHHHHHHhcCCCeEEEeCCC
Confidence            556799999999998876  67777788888877554 799999999999976332  2445666667788999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHH
Q 027856          160 SMNVENAFTEVLTQIYRVV  178 (217)
Q Consensus       160 ~~~i~~~~~~i~~~~~~~~  178 (217)
                      |+|++++|++|.+.+....
T Consensus       320 g~gi~~l~~~i~~~l~~~~  338 (357)
T 2e87_A          320 GTGIDLVKEEIIKTLRPLA  338 (357)
T ss_dssp             TBTHHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHHH
Confidence            9999999999999886553

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.91  E-value=9.9e-24  Score=173.86  Aligned_cols=163  Identities=17%  Similarity=0.187  Sum_probs=121.8

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCC-CCCcccceeEeEEEEEEECCeEEEEEEEeCCC----------hhhhhhh
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRCDDKIVKAQIWDTAG----------QERYRAI   78 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~~   78 (217)
                      ....++|+++|.+|+|||||+++|++.... ....++.+.+.....+..++.  .+.+|||||          ++.+...
T Consensus       192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~  269 (456)
T 4dcu_A          192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL  269 (456)
T ss_dssp             CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred             ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence            345799999999999999999999987532 233344444444455666664  789999999          5667665


Q ss_pred             hh-hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHc-----CCcE
Q 027856           79 TS-AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERE-----NTFF  152 (217)
Q Consensus        79 ~~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~  152 (217)
                      .. .+++.+|++++|+|+++..+... ..|...+..   .++|+++|+||+|+.+.+....++..+.+...     ++++
T Consensus       270 ~~~~~~~~ad~~llviD~~~~~~~~~-~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (456)
T 4dcu_A          270 RALKAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPI  345 (456)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHHhhCCEEEEEEeCCCCcCHHH-HHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCE
Confidence            44 47889999999999988654332 345555544   37999999999999876667677777776654     5789


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHH
Q 027856          153 METSALESMNVENAFTEVLTQIYRVV  178 (217)
Q Consensus       153 ~~~Sa~~~~~i~~~~~~i~~~~~~~~  178 (217)
                      +++||++|.|++++|+.+.+.+.+..
T Consensus       346 ~~~SA~~g~gv~~l~~~i~~~~~~~~  371 (456)
T 4dcu_A          346 LFMSALTKKRIHTLMPAIIKASENHS  371 (456)
T ss_dssp             EECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred             EEEcCCCCcCHHHHHHHHHHHHHHhc
Confidence            99999999999999999998776554

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.90  E-value=1.6e-23  Score=172.45  Aligned_cols=156  Identities=17%  Similarity=0.122  Sum_probs=99.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCC-CCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhh--------hhhh
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAIT--------SAYY   83 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~~   83 (217)
                      .++|+++|.+|+|||||+|+|++.... ....++.+.+.....+.+++  +.+.+|||||...+...+        ..++
T Consensus       233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~  310 (476)
T 3gee_A          233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM  310 (476)
T ss_dssp             CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence            588999999999999999999998643 23334455555556666776  579999999987655333        3467


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCH
Q 027856           84 RGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNV  163 (217)
Q Consensus        84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  163 (217)
                      ..+|++++|+|++++.+++.+..+...+....  +.|+++|+||+|+......   +.+.+......+++++||++|.|+
T Consensus       311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~GI  385 (476)
T 3gee_A          311 AEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDGI  385 (476)
T ss_dssp             SSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBSH
T ss_pred             ccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCCH
Confidence            89999999999999887654333333333332  7899999999999764432   223333332467999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027856          164 ENAFTEVLTQIY  175 (217)
Q Consensus       164 ~~~~~~i~~~~~  175 (217)
                      +++|++|.+.+.
T Consensus       386 ~eL~~~i~~~~~  397 (476)
T 3gee_A          386 DTLKQHMGDLVK  397 (476)
T ss_dssp             HHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988765

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.90  E-value=3.6e-23  Score=161.56  Aligned_cols=156  Identities=21%  Similarity=0.182  Sum_probs=109.0

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCC-cccceeEeEEEEEEECCeEEEEEEEeCCChhh--------hhhhhhh
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRCDDKIVKAQIWDTAGQER--------YRAITSA   81 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~   81 (217)
                      ....+|+++|.+|+|||||+|+|++..+.... .+..+.......+...  ..++.||||||...        +......
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~   82 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYE   82 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHH
Confidence            45578999999999999999999999876432 2222222222223333  36899999999654        4556667


Q ss_pred             hhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH-c-CCcEEEEecCC
Q 027856           82 YYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAER-E-NTFFMETSALE  159 (217)
Q Consensus        82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~-~~~~~~~Sa~~  159 (217)
                      +++.+|++++|+|++++.+... ..++..+.... .+.|+++|+||+|+.....    +....... . ...++++||++
T Consensus        83 ~l~~ad~il~VvD~~~~~~~~~-~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~iSA~~  156 (301)
T 1wf3_A           83 ALADVNAVVWVVDLRHPPTPED-ELVARALKPLV-GKVPILLVGNKLDAAKYPE----EAMKAYHELLPEAEPRMLSALD  156 (301)
T ss_dssp             HTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGGT-TTSCEEEEEECGGGCSSHH----HHHHHHHHTSTTSEEEECCTTC
T ss_pred             HHhcCCEEEEEEECCCCCChHH-HHHHHHHHhhc-CCCCEEEEEECcccCCchH----HHHHHHHHhcCcCcEEEEeCCC
Confidence            8899999999999988755432 22334554432 4789999999999865322    02222222 2 34699999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027856          160 SMNVENAFTEVLTQI  174 (217)
Q Consensus       160 ~~~i~~~~~~i~~~~  174 (217)
                      |.|++++|+.+.+.+
T Consensus       157 g~gv~~l~~~l~~~l  171 (301)
T 1wf3_A          157 ERQVAELKADLLALM  171 (301)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHhc
Confidence            999999999998654

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.89  E-value=2.8e-23  Score=164.44  Aligned_cols=157  Identities=20%  Similarity=0.185  Sum_probs=117.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhh----hhhhhhhhh---cCC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER----YRAITSAYY---RGA   86 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~~---~~~   86 (217)
                      .+|+++|.+|||||||+++|++........+..+.......+.+++. ..+.+|||||...    +..+...++   ..+
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~  237 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT  237 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence            46899999999999999999987643322233333333444555442 4789999999643    223434444   459


Q ss_pred             cEEEEEEECCC---hhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcC--CcEEEEecCC
Q 027856           87 VGALLVYDVTR---HVTFENVERWLKELRDHTD--SNIVIMLVGNKADLRHLRAVSTEDATAFAEREN--TFFMETSALE  159 (217)
Q Consensus        87 d~ii~v~d~~~---~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~  159 (217)
                      +++++|+|+++   +.+++.+..|+.++..+..  .++|+++|+||+|+...    .+..+++.....  ..++++||++
T Consensus       238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~----~e~~~~l~~~l~~~~~v~~iSA~t  313 (342)
T 1lnz_A          238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA----AENLEAFKEKLTDDYPVFPISAVT  313 (342)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH----HHHHHHHHHHCCSCCCBCCCSSCC
T ss_pred             cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC----HHHHHHHHHHhhcCCCEEEEECCC
Confidence            99999999998   7788888889999887642  47999999999998652    234556666665  6799999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 027856          160 SMNVENAFTEVLTQIY  175 (217)
Q Consensus       160 ~~~i~~~~~~i~~~~~  175 (217)
                      +.|++++|++|.+.+.
T Consensus       314 g~gi~eL~~~l~~~l~  329 (342)
T 1lnz_A          314 REGLRELLFEVANQLE  329 (342)
T ss_dssp             SSTTHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999998764

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.89  E-value=2.4e-22  Score=164.81  Aligned_cols=153  Identities=21%  Similarity=0.274  Sum_probs=104.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCChhh---------hhhhhhhhh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER---------YRAITSAYY   83 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~~   83 (217)
                      .+|+++|.+|||||||+|+|++..... ...+..+.+.....+.+++.  .+.+|||||.+.         +...+..++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            589999999999999999999987542 33344445555566666764  679999999653         345667789


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHH-HHHHHHcCC-cEEEEecCCCC
Q 027856           84 RGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDA-TAFAERENT-FFMETSALESM  161 (217)
Q Consensus        84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~~~  161 (217)
                      +.+|++++|+|+.++.+..+. .+...+..   .++|+++|+||+|+.+.  . ..+. .++. ..++ .++++||++|.
T Consensus        80 ~~ad~il~V~D~~~~~~~~d~-~i~~~l~~---~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~g~  151 (439)
T 1mky_A           80 READLVLFVVDGKRGITKEDE-SLADFLRK---STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEHNI  151 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHHH-HHHHHHHH---HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTTTB
T ss_pred             HhCCEEEEEEECCCCCCHHHH-HHHHHHHH---cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccCCC
Confidence            999999999999876554321 12222222   27899999999998542  0 1222 3333 4565 69999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 027856          162 NVENAFTEVLTQIYR  176 (217)
Q Consensus       162 ~i~~~~~~i~~~~~~  176 (217)
                      |+.++|+++.+.+.+
T Consensus       152 gv~~L~~~i~~~l~~  166 (439)
T 1mky_A          152 NLDTMLETIIKKLEE  166 (439)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhccc
Confidence            999999999988764

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.89  E-value=1e-22  Score=167.88  Aligned_cols=153  Identities=21%  Similarity=0.250  Sum_probs=116.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCC-CCCcccceeEeEEEEEEECCeEEEEEEEeCCChh-hhh--------hhhhhh
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE-RYR--------AITSAY   82 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-~~~--------~~~~~~   82 (217)
                      .++|+++|.+|+|||||+|+|++.... ....+..+.+.....+.+++  ..+.+|||||.. .+.        .....+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            389999999999999999999998643 23334555666666777776  578999999976 443        223457


Q ss_pred             hcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCC
Q 027856           83 YRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMN  162 (217)
Q Consensus        83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  162 (217)
                      +..+|++++|+|++++.+++..+ +++.+     .+.|+++|+||+|+...  ...+++..++ ..+.+++++||++|.|
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~-~~~~~~i~iSAktg~G  391 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKL-GTDRHMVKISALKGEG  391 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHH-TCSTTEEEEEGGGTCC
T ss_pred             hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHh-cCCCcEEEEECCCCCC
Confidence            88999999999999987766543 33333     37899999999999652  4445554443 2446899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027856          163 VENAFTEVLTQIYR  176 (217)
Q Consensus       163 i~~~~~~i~~~~~~  176 (217)
                      ++++|++|.+.+..
T Consensus       392 i~eL~~~l~~~~~~  405 (482)
T 1xzp_A          392 LEKLEESIYRETQE  405 (482)
T ss_dssp             HHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999997764

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.88  E-value=5.6e-22  Score=164.01  Aligned_cols=158  Identities=17%  Similarity=0.135  Sum_probs=112.2

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCc-------CCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhh
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNE-------FSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSA   81 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~   81 (217)
                      .....++|+++|+.++|||||+++|++..       +..+.....+.+.....+.+++  ..+.+|||||++.|...+..
T Consensus        15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~   92 (482)
T 1wb1_A           15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVS   92 (482)
T ss_dssp             CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHH
T ss_pred             hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHH
Confidence            33457999999999999999999999876       2222323333343334444555  68999999999999988889


Q ss_pred             hhcCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC--CCHHHHHHHHHHc----CCcE
Q 027856           82 YYRGAVGALLVYDVTR---HVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA--VSTEDATAFAERE----NTFF  152 (217)
Q Consensus        82 ~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~----~~~~  152 (217)
                      .+..+|++++|+|+++   +.+.+.+.    .+..   .++|+++|+||+|+.+...  ...+++.+++...    +.++
T Consensus        93 ~~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i  165 (482)
T 1wb1_A           93 AADIIDLALIVVDAKEGPKTQTGEHML----ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI  165 (482)
T ss_dssp             HTTSCCEEEEEEETTTCSCHHHHHHHH----HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred             HHhhCCEEEEEEecCCCccHHHHHHHH----HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence            9999999999999988   44443332    2222   2688899999999975321  1233444555544    5679


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHH
Q 027856          153 METSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       153 ~~~Sa~~~~~i~~~~~~i~~~~~  175 (217)
                      +++||++|.|+.+++++|.+.+.
T Consensus       166 i~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          166 IPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHhhc
Confidence            99999999999999999998775

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.88  E-value=2.1e-21  Score=147.13  Aligned_cols=164  Identities=15%  Similarity=0.171  Sum_probs=107.6

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcc--cceeEeEEEEEEECCeEEEEEEEeCCC-----------hhhh
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKS--TIGVEFATRSIRCDDKIVKAQIWDTAG-----------QERY   75 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~Dt~G-----------~~~~   75 (217)
                      +....++|+++|.+|+|||||+++|++..+.....+  +.+.......+.+++  ..+.+|||||           ...+
T Consensus        25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~  102 (239)
T 3lxx_A           25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEI  102 (239)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHH
Confidence            445679999999999999999999999887655544  344444445555566  4789999999           3345


Q ss_pred             hhhhhhhhcCCcEEEEEEECCChhh--HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCC------HHHHHHHHHH
Q 027856           76 RAITSAYYRGAVGALLVYDVTRHVT--FENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS------TEDATAFAER  147 (217)
Q Consensus        76 ~~~~~~~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~~  147 (217)
                      ......+++.+|++++|+|+++...  ...+..+...+...  ...|+++|+||+|+.....+.      .+.++.+...
T Consensus       103 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~  180 (239)
T 3lxx_A          103 IRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI  180 (239)
T ss_dssp             HHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHH
T ss_pred             HHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH
Confidence            5555666788999999999875433  22222333322221  146899999999986543332      2356777788


Q ss_pred             cCCcEEEEecCCC-----CCHHHHHHHHHHHHHH
Q 027856          148 ENTFFMETSALES-----MNVENAFTEVLTQIYR  176 (217)
Q Consensus       148 ~~~~~~~~Sa~~~-----~~i~~~~~~i~~~~~~  176 (217)
                      .+..++.++...+     .++.++|..+.+.+.+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          181 FGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             HSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            8888888877643     5788888877765543

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.88  E-value=1.5e-21  Score=158.46  Aligned_cols=164  Identities=16%  Similarity=0.139  Sum_probs=114.0

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEE----------------EEEEE---CCeEEEEEEEeC
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFAT----------------RSIRC---DDKIVKAQIWDT   69 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~----------------~~~~~---~~~~~~~~l~Dt   69 (217)
                      .....++|+++|++|+|||||+++|++........... .+...                .....   ......+.+|||
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt   82 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAE-TNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA   82 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEE-EEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccc-cceeeccccccccceecccccccccccccccccceEEEEEC
Confidence            34567999999999999999999999864332110000 00000                00000   112368999999


Q ss_pred             CChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC--CHHHHHHHHHH
Q 027856           70 AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV--STEDATAFAER  147 (217)
Q Consensus        70 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~  147 (217)
                      ||++.+...+...+..+|++++|+|++++.+......++..+....  ..|+++|+||+|+.+..+.  ..+++.++...
T Consensus        83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~  160 (403)
T 3sjy_A           83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG  160 (403)
T ss_dssp             CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999998765555566666665442  3589999999999763221  11222333322


Q ss_pred             c---CCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027856          148 E---NTFFMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       148 ~---~~~~~~~Sa~~~~~i~~~~~~i~~~~~  175 (217)
                      .   +++++++||++|.|++++|+.|.+.+.
T Consensus       161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~  191 (403)
T 3sjy_A          161 TWAENVPIIPVSALHKINIDSLIEGIEEYIK  191 (403)
T ss_dssp             STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             hCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence            2   567999999999999999999986553

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.88  E-value=4.3e-21  Score=156.03  Aligned_cols=159  Identities=23%  Similarity=0.197  Sum_probs=105.4

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcC---CCCCcc--cceeEeEEEEEEE-------------C--C----eEEEEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEF---SLESKS--TIGVEFATRSIRC-------------D--D----KIVKAQI   66 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~---~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~l   66 (217)
                      ...++|+++|+.++|||||+++|++...   .....+  |....+....+..             .  +    ....+.+
T Consensus         6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   85 (408)
T 1s0u_A            6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF   85 (408)
T ss_dssp             CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence            4569999999999999999999996532   223223  4433333333321             1  1    1368999


Q ss_pred             EeCCChhhhhhhhhhhhcCCcEEEEEEECCC----hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC--CCHHH
Q 027856           67 WDTAGQERYRAITSAYYRGAVGALLVYDVTR----HVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA--VSTED  140 (217)
Q Consensus        67 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~  140 (217)
                      |||||++.|...+...+..+|++++|+|+++    +.+.+.+..    +...  ...|+++++||+|+.+...  ...++
T Consensus        86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~l--~~~~iivv~NK~Dl~~~~~~~~~~~~  159 (408)
T 1s0u_A           86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA----LEIL--GIDKIIIVQNKIDLVDEKQAEENYEQ  159 (408)
T ss_dssp             EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH----HHHT--TCCCEEEEEECTTSSCTTTTTTHHHH
T ss_pred             EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH----HHHc--CCCeEEEEEEccCCCCHHHHHHHHHH
Confidence            9999999998888788889999999999985    444443332    2222  1357999999999976443  23455


Q ss_pred             HHHHHHH---cCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027856          141 ATAFAER---ENTFFMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       141 ~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  175 (217)
                      +.+++..   .+++++++||++|.|+++++++|.+.+.
T Consensus       160 i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~  197 (408)
T 1s0u_A          160 IKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP  197 (408)
T ss_dssp             HHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred             HHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            6666654   3578999999999999999999886543

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.88  E-value=1.1e-21  Score=165.34  Aligned_cols=158  Identities=19%  Similarity=0.235  Sum_probs=110.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCc--CC-----CCC------cccceeEeEEE--EEEE---CCeEEEEEEEeCCChh
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNE--FS-----LES------KSTIGVEFATR--SIRC---DDKIVKAQIWDTAGQE   73 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~--~~-----~~~------~~~~~~~~~~~--~~~~---~~~~~~~~l~Dt~G~~   73 (217)
                      ...+|+++|+.++|||||+++|+...  +.     ...      ..+.+++....  .+.+   ++..+.++||||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            46799999999999999999998732  11     001      01122233222  2222   5567899999999999


Q ss_pred             hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCC---
Q 027856           74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENT---  150 (217)
Q Consensus        74 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---  150 (217)
                      .|...+...+..+|++++|+|+++..+.+....|+....    .+.|+++|+||+|+...+  ..+...++....+.   
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~  156 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDAT  156 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCT
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcc
Confidence            999989999999999999999999877777777766654    278999999999997632  22334455555565   


Q ss_pred             cEEEEecCCCCCHHHHHHHHHHHHH
Q 027856          151 FFMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       151 ~~~~~Sa~~~~~i~~~~~~i~~~~~  175 (217)
                      .++++||++|.|++++|+++.+.+.
T Consensus       157 ~vi~vSAktg~GI~~Ll~~I~~~lp  181 (599)
T 3cb4_D          157 DAVRCSAKTGVGVQDVLERLVRDIP  181 (599)
T ss_dssp             TCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred             eEEEeecccCCCchhHHHHHhhcCC
Confidence            4999999999999999999987654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.87  E-value=4.7e-23  Score=168.92  Aligned_cols=153  Identities=19%  Similarity=0.164  Sum_probs=101.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChh--------hhhhhhhhhhc
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE--------RYRAITSAYYR   84 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~~~~~~~~~   84 (217)
                      .++|+++|.+|+|||||+|+|++..+... ..+.+.+..............+.+|||||.+        .+...+..++.
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   81 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD   81 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            36899999999999999999999876533 2455555555554454444689999999975        56677788899


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCC-cEEEEecCCCCCH
Q 027856           85 GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENT-FFMETSALESMNV  163 (217)
Q Consensus        85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i  163 (217)
                      .+|++++|+|+.++.+..+. .+...+..   .++|+++|+||+|+.....    +..++. ..++ .++++||++|.|+
T Consensus        82 ~ad~il~vvD~~~~~~~~d~-~~~~~l~~---~~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~gv  152 (436)
T 2hjg_A           82 EADVIIFMVNGREGVTAADE-EVAKILYR---TKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLGL  152 (436)
T ss_dssp             HCSEEEEEEETTTCSCHHHH-HHHHHHTT---CCSCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBTH
T ss_pred             hCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCCh
Confidence            99999999999987665432 23333332   4789999999999865321    111222 3454 6899999999999


Q ss_pred             HHHHHHHHHHHH
Q 027856          164 ENAFTEVLTQIY  175 (217)
Q Consensus       164 ~~~~~~i~~~~~  175 (217)
                      .++|+++.+.+.
T Consensus       153 ~~L~~~i~~~l~  164 (436)
T 2hjg_A          153 GDLLDAVAEHFK  164 (436)
T ss_dssp             HHHHHHHHHTGG
T ss_pred             HHHHHHHHHhcC
Confidence            999999987764

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.87  E-value=1.8e-21  Score=163.74  Aligned_cols=159  Identities=21%  Similarity=0.260  Sum_probs=114.2

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCc--CCC-----CCcc------cceeEeE--EEEEEE---CCeEEEEEEEeCCCh
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNE--FSL-----ESKS------TIGVEFA--TRSIRC---DDKIVKAQIWDTAGQ   72 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~--~~~-----~~~~------~~~~~~~--~~~~~~---~~~~~~~~l~Dt~G~   72 (217)
                      +...+|+++|+.++|||||+++|+...  +..     ....      ..+++..  ...+.+   ++..+.++||||||+
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            457899999999999999999998631  110     0000      1111111  122222   456689999999999


Q ss_pred             hhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCC--
Q 027856           73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENT--  150 (217)
Q Consensus        73 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--  150 (217)
                      ..|...+...+..+|++++|+|+++..+.+....|.....    .+.|+++|+||+|+...+  ..+...++....+.  
T Consensus        84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~  157 (600)
T 2ywe_A           84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDP  157 (600)
T ss_dssp             GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCG
T ss_pred             HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCc
Confidence            9999888889999999999999999887777777766554    378999999999997532  22334455555565  


Q ss_pred             -cEEEEecCCCCCHHHHHHHHHHHHH
Q 027856          151 -FFMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       151 -~~~~~Sa~~~~~i~~~~~~i~~~~~  175 (217)
                       .++++||++|.|++++|++|++.+.
T Consensus       158 ~~vi~vSAktg~GI~~Lle~I~~~lp  183 (600)
T 2ywe_A          158 EEAILASAKEGIGIEEILEAIVNRIP  183 (600)
T ss_dssp             GGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             ccEEEEEeecCCCchHHHHHHHHhcc
Confidence             3999999999999999999987654

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.87  E-value=4.1e-21  Score=153.44  Aligned_cols=160  Identities=18%  Similarity=0.145  Sum_probs=109.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh---------hhhhhhhhhhhcC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ---------ERYRAITSAYYRG   85 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~---------~~~~~~~~~~~~~   85 (217)
                      .|+++|.+|+|||||+|+|++........+..+.+.....+.+++  ..+.+|||+|.         +.+...+. .+..
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~  257 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKY  257 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHH-GGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHH-HHHh
Confidence            499999999999999999999876444334445556666777777  46799999995         22333333 4688


Q ss_pred             CcEEEEEEECCChh--hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC-CHHHHHHHHHHc---CCcEEEEecCC
Q 027856           86 AVGALLVYDVTRHV--TFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV-STEDATAFAERE---NTFFMETSALE  159 (217)
Q Consensus        86 ~d~ii~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~---~~~~~~~Sa~~  159 (217)
                      +|++++|+|++++.  ..+....|...+......+.|+++|+||+|+...... ..+.+..++...   +..++++||++
T Consensus       258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~  337 (364)
T 2qtf_A          258 SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALK  337 (364)
T ss_dssp             SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTT
T ss_pred             CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCC
Confidence            99999999999876  4555556666666554457899999999998653210 011222333444   23689999999


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 027856          160 SMNVENAFTEVLTQIYRV  177 (217)
Q Consensus       160 ~~~i~~~~~~i~~~~~~~  177 (217)
                      +.|+++++++|.+.+...
T Consensus       338 g~gi~~L~~~I~~~l~~~  355 (364)
T 2qtf_A          338 RTNLELLRDKIYQLATQL  355 (364)
T ss_dssp             TBSHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHhccc
Confidence            999999999998876543

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.87  E-value=2.2e-22  Score=165.21  Aligned_cols=152  Identities=20%  Similarity=0.238  Sum_probs=104.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhh--------hhh
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAIT--------SAY   82 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~   82 (217)
                      ..++|+++|.+|+|||||+|+|++..... ...++.+.+.....+.+++  ..+.+|||||...+....        ..+
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence            35899999999999999999999976542 3334445555555666677  477999999976544332        335


Q ss_pred             hcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCC
Q 027856           83 YRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMN  162 (217)
Q Consensus        83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  162 (217)
                      +..+|++++|+|++++.+... ..|+..+.     ..|+++|+||+|+.......  ....+.  .+.+++++||++|.|
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~G  370 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQG  370 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBS
T ss_pred             hhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCC
Confidence            788999999999998776544 44555543     47999999999997644332  111111  346799999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027856          163 VENAFTEVLTQIY  175 (217)
Q Consensus       163 i~~~~~~i~~~~~  175 (217)
                      ++++|++|.+.+.
T Consensus       371 i~eL~~~i~~~~~  383 (462)
T 3geh_A          371 IDSLETAILEIVQ  383 (462)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988764

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.87  E-value=2e-21  Score=148.94  Aligned_cols=162  Identities=13%  Similarity=0.109  Sum_probs=105.8

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcC-CCCCccc-ceeEeEEEEEEECCeEEEEEEEeCCChhhhh-----------
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEF-SLESKST-IGVEFATRSIRCDDKIVKAQIWDTAGQERYR-----------   76 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----------   76 (217)
                      ....++|+|+|.+|+|||||+++|++... .....++ .+..........++  ..+.||||||...+.           
T Consensus        19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~   96 (260)
T 2xtp_A           19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ   96 (260)
T ss_dssp             --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence            44579999999999999999999999874 3333333 34444444555555  578999999965432           


Q ss_pred             hhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCC--CCcEEEEEe-CCCCCCccCCCH-------HHHHHHHH
Q 027856           77 AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS--NIVIMLVGN-KADLRHLRAVST-------EDATAFAE  146 (217)
Q Consensus        77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~p~ivv~n-K~D~~~~~~~~~-------~~~~~~~~  146 (217)
                      .....+++.+|++++|+|+++.....  ..++..+....+.  ..|.++++| |+|+... ....       .++..+..
T Consensus        97 ~~~~~~~~~~d~il~V~d~~~~~~~~--~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~  173 (260)
T 2xtp_A           97 RCYLLSAPGPHVLLLVTQLGRYTSQD--QQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVA  173 (260)
T ss_dssp             HHHHHHTTCCSEEEEEEETTCCCHHH--HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHH
T ss_pred             HHHHhcCCCCcEEEEEEeCCCCCHHH--HHHHHHHHHHhCchhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHH
Confidence            22234678999999999998622211  1222333332221  356666666 9999742 1111       22344555


Q ss_pred             HcCCc---E--EEEecCCCCCHHHHHHHHHHHHHH
Q 027856          147 RENTF---F--METSALESMNVENAFTEVLTQIYR  176 (217)
Q Consensus       147 ~~~~~---~--~~~Sa~~~~~i~~~~~~i~~~~~~  176 (217)
                      ..+..   +  +++||++|.|+.++|++|.+.+.+
T Consensus       174 ~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          174 ACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME  208 (260)
T ss_dssp             HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence            55432   2  789999999999999999988765

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.87  E-value=7e-21  Score=156.15  Aligned_cols=161  Identities=22%  Similarity=0.194  Sum_probs=109.6

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhh-----------
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAI-----------   78 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----------   78 (217)
                      +..++|+++|++|||||||+|+|++..... ...+..+.+.....+.+++.  .+.+|||+|.......           
T Consensus       178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~  255 (439)
T 1mky_A          178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY  255 (439)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred             ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence            356999999999999999999999986532 22233344444556667775  6789999996433221           


Q ss_pred             -hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHH-H----HcCCcE
Q 027856           79 -TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFA-E----RENTFF  152 (217)
Q Consensus        79 -~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~----~~~~~~  152 (217)
                       ...++..+|++++|+|+++..+.++. .+...+..   .++|+++|+||+|+.+.+....++..... .    ..++++
T Consensus       256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (439)
T 1mky_A          256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL  331 (439)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE
Confidence             12356789999999999887665542 23333332   37999999999999765444444443222 2    235789


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHH
Q 027856          153 METSALESMNVENAFTEVLTQIYRV  177 (217)
Q Consensus       153 ~~~Sa~~~~~i~~~~~~i~~~~~~~  177 (217)
                      +++||++|.|++++|+.+.+.+.+.
T Consensus       332 ~~~SA~~g~gv~~l~~~i~~~~~~~  356 (439)
T 1mky_A          332 IFTSADKGWNIDRMIDAMNLAYASY  356 (439)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhh
Confidence            9999999999999999999776554

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.87  E-value=4e-21  Score=156.32  Aligned_cols=160  Identities=23%  Similarity=0.211  Sum_probs=111.9

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcC---CCCCcc--cceeEeEEEEEEE-------------C--C----eEEEEE
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEF---SLESKS--TIGVEFATRSIRC-------------D--D----KIVKAQ   65 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~---~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~   65 (217)
                      ....++|+++|+.++|||||+++|++...   ......  |....+....+..             .  +    ....+.
T Consensus         7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   86 (410)
T 1kk1_A            7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   86 (410)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence            46789999999999999999999996532   223223  4333333333321             0  1    136899


Q ss_pred             EEeCCChhhhhhhhhhhhcCCcEEEEEEECCCh----hhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC--CCHH
Q 027856           66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRH----VTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA--VSTE  139 (217)
Q Consensus        66 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~~~  139 (217)
                      ||||||++.|.......+..+|++++|+|+++.    .+.+.+..    +...  ...|+++|+||+|+.+...  ...+
T Consensus        87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~--~~~~iivviNK~Dl~~~~~~~~~~~  160 (410)
T 1kk1_A           87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQII--GQKNIIIAQNKIELVDKEKALENYR  160 (410)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHHH--TCCCEEEEEECGGGSCHHHHHHHHH
T ss_pred             EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHHc--CCCcEEEEEECccCCCHHHHHHHHH
Confidence            999999999988877788899999999999854    44443332    2222  1357999999999976332  1233


Q ss_pred             HHHHHHHH---cCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027856          140 DATAFAER---ENTFFMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       140 ~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  175 (217)
                      ++.+++..   .+++++++||++|.|+++++++|.+.+.
T Consensus       161 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~  199 (410)
T 1kk1_A          161 QIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  199 (410)
T ss_dssp             HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            44455443   3578999999999999999999886543

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.87  E-value=7.1e-22  Score=154.41  Aligned_cols=157  Identities=20%  Similarity=0.163  Sum_probs=106.3

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCC-cccceeEeEEEEEEECCeEEEEEEEeCCChh-h--------hhhhhh
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRCDDKIVKAQIWDTAGQE-R--------YRAITS   80 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-~--------~~~~~~   80 (217)
                      ....+|+++|++|+|||||+|+|++..+.... .+..+.......+..++  ..+.+|||||.. .        +.....
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~   83 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAAS   83 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHH
Confidence            34568999999999999999999998764322 12122222222333343  588999999976 2        233345


Q ss_pred             hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCC-cEEEEecCC
Q 027856           81 AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENT-FFMETSALE  159 (217)
Q Consensus        81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  159 (217)
                      .++..+|++++|+|+++ -+.  ...++.....  ..+.|+++++||+|+........+.+.++....+. .++++||++
T Consensus        84 ~~l~~~D~vl~Vvd~~~-~~~--~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~  158 (301)
T 1ega_A           84 SSIGDVELVIFVVEGTR-WTP--DDEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAET  158 (301)
T ss_dssp             SCCCCEEEEEEEEETTC-CCH--HHHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred             HHHhcCCEEEEEEeCCC-CCH--HHHHHHHHHH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCC
Confidence            67789999999999977 322  2223322222  24789999999999865222222334455555665 699999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027856          160 SMNVENAFTEVLTQI  174 (217)
Q Consensus       160 ~~~i~~~~~~i~~~~  174 (217)
                      |.|++++++.+.+.+
T Consensus       159 g~~v~~l~~~i~~~l  173 (301)
T 1ega_A          159 GLNVDTIAAIVRKHL  173 (301)
T ss_dssp             TTTHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHhC
Confidence            999999999988654

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.86  E-value=3.3e-21  Score=157.80  Aligned_cols=155  Identities=19%  Similarity=0.172  Sum_probs=104.4

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCC-------------------------------CCCcccceeEeEEEEEEE
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFS-------------------------------LESKSTIGVEFATRSIRC   57 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~   57 (217)
                      +....++|+++|++++|||||+++|+...-.                               .......+.+.....  +
T Consensus        13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~--~   90 (439)
T 3j2k_7           13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAY--F   90 (439)
T ss_pred             CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEE--E
Confidence            4456799999999999999999999654211                               111122333333333  3


Q ss_pred             CCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhh---HH---HHHHHHHHHHhhcCCCCc-EEEEEeCCCC
Q 027856           58 DDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVT---FE---NVERWLKELRDHTDSNIV-IMLVGNKADL  130 (217)
Q Consensus        58 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~---~~~~~~~~l~~~~~~~~p-~ivv~nK~D~  130 (217)
                      ......+.||||||++.|...+...+..+|++++|+|+++...   ++   .....+..+..   .+.| +++|+||+|+
T Consensus        91 ~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~Dl  167 (439)
T 3j2k_7           91 ETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMDD  167 (439)
T ss_pred             ecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCCC
Confidence            3344689999999999999999999999999999999988632   11   11112222222   2566 8999999998


Q ss_pred             CCcc--C----CCHHHHHHHHHHcC------CcEEEEecCCCCCHHHHHH
Q 027856          131 RHLR--A----VSTEDATAFAEREN------TFFMETSALESMNVENAFT  168 (217)
Q Consensus       131 ~~~~--~----~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~~  168 (217)
                      ....  +    ...+++..++...+      ++++++||++|.|+.++++
T Consensus       168 ~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          168 PTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            5321  1    11233344444443      4699999999999999766

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.86  E-value=4.9e-22  Score=153.53  Aligned_cols=160  Identities=17%  Similarity=0.220  Sum_probs=93.3

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCC-C-------cccceeEeEEEEEEECCeEEEEEEEeCCChh-------hh
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLE-S-------KSTIGVEFATRSIRCDDKIVKAQIWDTAGQE-------RY   75 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-------~~   75 (217)
                      ...++|+|+|.+|+|||||+|+|++...... +       .+|.+.+.....+..++..+.+.+|||||..       .+
T Consensus         6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~   85 (274)
T 3t5d_A            6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW   85 (274)
T ss_dssp             -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred             ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence            4579999999999999999999888765433 2       4555556555555556666799999999952       22


Q ss_pred             hhhh-------hhhhc-------------CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC
Q 027856           76 RAIT-------SAYYR-------------GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA  135 (217)
Q Consensus        76 ~~~~-------~~~~~-------------~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~  135 (217)
                      ..+.       ..++.             .+|+++++++.+.......-..++..+..    ++|+++|+||+|+....+
T Consensus        86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~e  161 (274)
T 3t5d_A           86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPEE  161 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHHH
Confidence            2222       22222             37899999977653211111334444443    789999999999865322


Q ss_pred             CC--HHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHH
Q 027856          136 VS--TEDATAFAERENTFFMETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       136 ~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  174 (217)
                      ..  .+.+.+.....++.++++|+.+++++.+++++|.+.+
T Consensus       162 ~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          162 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred             HHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence            21  1234445556788899999999999999998887543

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.86  E-value=2.1e-21  Score=161.00  Aligned_cols=153  Identities=15%  Similarity=0.128  Sum_probs=100.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCC-----------------------------CcccceeEeEEEEEEECCeEE
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLE-----------------------------SKSTIGVEFATRSIRCDDKIV   62 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~   62 (217)
                      ..++|+++|++++|||||+++|++......                             .....+++.......++....
T Consensus        32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~  111 (483)
T 3p26_A           32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA  111 (483)
T ss_dssp             CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence            469999999999999999999986521100                             001113333333333444457


Q ss_pred             EEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHH------HHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC
Q 027856           63 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFEN------VERWLKELRDHTDSNIVIMLVGNKADLRHLRAV  136 (217)
Q Consensus        63 ~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~------~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~  136 (217)
                      .+.||||||++.|...+..++..+|++++|+|++++.+...      ....+..+...  ...|+++|+||+|+.+.++.
T Consensus       112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~~~  189 (483)
T 3p26_A          112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQQ  189 (483)
T ss_dssp             EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTCHH
T ss_pred             eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccchHH
Confidence            89999999999999999999999999999999998643221      11222222222  13569999999999764333


Q ss_pred             CHHHHH----HHHHHc-----CCcEEEEecCCCCCHHHH
Q 027856          137 STEDAT----AFAERE-----NTFFMETSALESMNVENA  166 (217)
Q Consensus       137 ~~~~~~----~~~~~~-----~~~~~~~Sa~~~~~i~~~  166 (217)
                      ..++..    .+....     +++++++||++|.|+.++
T Consensus       190 ~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el  228 (483)
T 3p26_A          190 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  228 (483)
T ss_dssp             HHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred             HHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence            333333    333332     456999999999999753

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.85  E-value=4.5e-21  Score=155.38  Aligned_cols=159  Identities=18%  Similarity=0.133  Sum_probs=108.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCc-------CCCC-------CcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhh
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNE-------FSLE-------SKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRA   77 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~   77 (217)
                      ..++|+++|++++|||||+++|++..       +...       .....+.+.......+......+.||||||++.|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            35899999999999999999999741       1000       001222333333344444446889999999999988


Q ss_pred             hhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCccC---CCHHHHHHHHHHcC----
Q 027856           78 ITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV-IMLVGNKADLRHLRA---VSTEDATAFAEREN----  149 (217)
Q Consensus        78 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~----  149 (217)
                      .+...+..+|++|+|+|+++....+..+.| ..+...   ++| +++++||+|+.+..+   ...+++.+++...+    
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~~---~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~  157 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE  157 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHHc---CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence            888889999999999999986544433333 333332   678 689999999974211   11234556666655    


Q ss_pred             -CcEEEEecCCCCC----------HHHHHHHHHHHH
Q 027856          150 -TFFMETSALESMN----------VENAFTEVLTQI  174 (217)
Q Consensus       150 -~~~~~~Sa~~~~~----------i~~~~~~i~~~~  174 (217)
                       ++++++||++|.|          +.++|+.|.+.+
T Consensus       158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~  193 (397)
T 1d2e_A          158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (397)
T ss_dssp             TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence             5799999999765          667776665543

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.85  E-value=3.1e-23  Score=172.33  Aligned_cols=158  Identities=18%  Similarity=0.185  Sum_probs=114.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..++|+++|++++|||||+++|.+..+.....++.+.+.....+...+ ...++||||||++.|...+..++..+|++++
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            457899999999999999999998877655555555544444443322 2378999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC-CHHHHHHH---HHHc--CCcEEEEecCCCCCHHH
Q 027856           92 VYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV-STEDATAF---AERE--NTFFMETSALESMNVEN  165 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~---~~~~--~~~~~~~Sa~~~~~i~~  165 (217)
                      |+|+++....+..+.|. .+.   ..+.|+++++||+|+.+.+.. ...++...   +..+  .++++++||++|.|+++
T Consensus        82 VVDa~dg~~~qt~e~l~-~~~---~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e  157 (537)
T 3izy_P           82 VVAADDGVMKQTVESIQ-HAK---DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA  157 (537)
T ss_dssp             ECBSSSCCCHHHHHHHH-HHH---TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred             EEECCCCccHHHHHHHH-HHH---HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence            99999876554443332 222   247899999999999653211 11112111   1112  24699999999999999


Q ss_pred             HHHHHHHHH
Q 027856          166 AFTEVLTQI  174 (217)
Q Consensus       166 ~~~~i~~~~  174 (217)
                      +|+++...+
T Consensus       158 Lle~I~~l~  166 (537)
T 3izy_P          158 LAEATIALA  166 (537)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999998655

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.85  E-value=4.5e-21  Score=140.36  Aligned_cols=116  Identities=19%  Similarity=0.293  Sum_probs=87.4

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCC---CcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcC-
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLE---SKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRG-   85 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~-   85 (217)
                      ....++|+++|++|+|||||+++|++..+...   ..++.+.+         ...+.+.+|||||.+.+...+..++.. 
T Consensus        45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~  115 (193)
T 2ged_A           45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD---------YDGSGVTLVDFPGHVKLRYKLSDYLKTR  115 (193)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------C---------CCCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeee---------ecCCeEEEEECCCCchHHHHHHHHHHhh
Confidence            35678999999999999999999999876441   22222211         133578999999998887777777665 


Q ss_pred             ---CcEEEEEEECC-ChhhHHHHHHHHHHHHhh----cCCCCcEEEEEeCCCCCCcc
Q 027856           86 ---AVGALLVYDVT-RHVTFENVERWLKELRDH----TDSNIVIMLVGNKADLRHLR  134 (217)
Q Consensus        86 ---~d~ii~v~d~~-~~~s~~~~~~~~~~l~~~----~~~~~p~ivv~nK~D~~~~~  134 (217)
                         +|++++|+|++ +..++..+..|+..+...    ...+.|+++|+||+|+.+..
T Consensus       116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  172 (193)
T 2ged_A          116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  172 (193)
T ss_dssp             GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence               89999999999 898998888877776543    23589999999999997643

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.85  E-value=1.7e-20  Score=148.95  Aligned_cols=123  Identities=17%  Similarity=0.246  Sum_probs=100.8

Q ss_pred             EEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCC----------hhhHHHHHHHHHHHHhhc-CCCCcE
Q 027856           53 RSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR----------HVTFENVERWLKELRDHT-DSNIVI  121 (217)
Q Consensus        53 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~l~~~~-~~~~p~  121 (217)
                      ..+.++  .+.+.+|||+|++.++..|..++++++++|+|+|+++          ..++.+...|+..+.... ..+.|+
T Consensus       186 ~~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~pi  263 (353)
T 1cip_A          186 THFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSI  263 (353)
T ss_dssp             EEEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred             EEEeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcE
Confidence            334444  3789999999999999999999999999999999999          456887777887776532 257999


Q ss_pred             EEEEeCCCCCCcc---------------CCCHHHHHHHHH-----------HcCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027856          122 MLVGNKADLRHLR---------------AVSTEDATAFAE-----------RENTFFMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       122 ivv~nK~D~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  175 (217)
                      ++++||.|+...+               .++.+++..++.           ..++.++++||+++.|+.++|+++.+.+.
T Consensus       264 iLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~  343 (353)
T 1cip_A          264 ILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII  343 (353)
T ss_dssp             EEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             EEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHH
Confidence            9999999985422               356788888876           34577999999999999999999999887


Q ss_pred             HH
Q 027856          176 RV  177 (217)
Q Consensus       176 ~~  177 (217)
                      +.
T Consensus       344 ~~  345 (353)
T 1cip_A          344 KN  345 (353)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.85  E-value=1.3e-21  Score=161.22  Aligned_cols=154  Identities=19%  Similarity=0.156  Sum_probs=103.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCC--------hhhhhhhhhhhh
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAG--------QERYRAITSAYY   83 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G--------~~~~~~~~~~~~   83 (217)
                      ..++|+++|.+|||||||+|+|++..+.... .+.+.+.......+......+.+|||||        ++.+...+..++
T Consensus        22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~-~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~  100 (456)
T 4dcu_A           22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVE-DTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM  100 (456)
T ss_dssp             -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence            4679999999999999999999998765333 4556666666666665556899999999        777888888999


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcC-CcEEEEecCCCCC
Q 027856           84 RGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAEREN-TFFMETSALESMN  162 (217)
Q Consensus        84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~  162 (217)
                      ..+|++++|+|..+..+..+ ..+...+..   .++|+++|+||+|+.+..    ....++. ..+ ..++++||.+|.|
T Consensus       101 ~~ad~il~VvD~~~~~~~~d-~~l~~~l~~---~~~pvilV~NK~D~~~~~----~~~~e~~-~lg~~~~~~iSA~~g~g  171 (456)
T 4dcu_A          101 DEADVIIFMVNGREGVTAAD-EEVAKILYR---TKKPVVLAVNKLDNTEMR----ANIYDFY-SLGFGEPYPISGTHGLG  171 (456)
T ss_dssp             HHCSEEEEEEESSSCSCHHH-HHHHHHHTT---CCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTCTT
T ss_pred             hhCCEEEEEEeCCCCCChHH-HHHHHHHHH---cCCCEEEEEECccchhhh----hhHHHHH-HcCCCceEEeecccccc
Confidence            99999999999887544332 223333332   489999999999986421    1111122 223 2478999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027856          163 VENAFTEVLTQIY  175 (217)
Q Consensus       163 i~~~~~~i~~~~~  175 (217)
                      +.++++.+.+.+.
T Consensus       172 v~~L~~~i~~~l~  184 (456)
T 4dcu_A          172 LGDLLDAVAEHFK  184 (456)
T ss_dssp             HHHHHHHHHTTGG
T ss_pred             hHHHHHHHHhhcc
Confidence            9999999987553

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.84  E-value=7.5e-22  Score=157.80  Aligned_cols=161  Identities=19%  Similarity=0.292  Sum_probs=89.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCC-CC--------cccceeEeEEEEEEECCeEEEEEEEeCCCh-------hhh
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSL-ES--------KSTIGVEFATRSIRCDDKIVKAQIWDTAGQ-------ERY   75 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-------~~~   75 (217)
                      ..++|+|+|++|+|||||+++|++..... .+        .++.+.......+..++..+.+.+|||||.       +.+
T Consensus        36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~  115 (361)
T 2qag_A           36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF  115 (361)
T ss_dssp             CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence            46899999999999999999988764332 22        134444444444445666779999999997       555


Q ss_pred             hhhhh-------hhhcC-------------CcEEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCcc
Q 027856           76 RAITS-------AYYRG-------------AVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHLR  134 (217)
Q Consensus        76 ~~~~~-------~~~~~-------------~d~ii~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~  134 (217)
                      ..++.       .++..             +|+++|+++.. ..++..+. .|+..+    ..++|+++|+||+|+...+
T Consensus       116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~~  190 (361)
T 2qag_A          116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTLK  190 (361)
T ss_dssp             CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCHH
Confidence            55554       44433             23455555531 23333333 344433    2579999999999997654


Q ss_pred             CCCH--HHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 027856          135 AVST--EDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVV  178 (217)
Q Consensus       135 ~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  178 (217)
                      ++..  +++.+++..++++++++||+++.+ ++.|.++.+.+.+..
T Consensus       191 ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~i  235 (361)
T 2qag_A          191 ERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASI  235 (361)
T ss_dssp             HHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcC
Confidence            4433  455666667789999999999999 888999888876543

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.84  E-value=1.1e-20  Score=154.84  Aligned_cols=158  Identities=22%  Similarity=0.187  Sum_probs=106.0

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCC---C---------Cccc-------------------ceeEeEEEEEEE
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSL---E---------SKST-------------------IGVEFATRSIRC   57 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~---~---------~~~~-------------------~~~~~~~~~~~~   57 (217)
                      .....++|+++|++++|||||+++|++.....   .         ...+                   .+++.......+
T Consensus        20 ~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~   99 (434)
T 1zun_B           20 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF   99 (434)
T ss_dssp             TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred             ccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEe
Confidence            34567999999999999999999998754110   0         0011                   111121222223


Q ss_pred             CCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC-
Q 027856           58 DDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV-  136 (217)
Q Consensus        58 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~-  136 (217)
                      ......+.+|||||++.|...+..++..+|++++|+|++++...+. ..++..+...  ...|+++|+||+|+.+..+. 
T Consensus       100 ~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt-~~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~~  176 (434)
T 1zun_B          100 STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIASLL--GIKHIVVAINKMDLNGFDERV  176 (434)
T ss_dssp             ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHHHHT--TCCEEEEEEECTTTTTSCHHH
T ss_pred             ecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCeEEEEEEcCcCCcccHHH
Confidence            3334689999999999999888889999999999999998653332 2333333332  12368999999999752211 


Q ss_pred             ---CHHHHHHHHHHcC-----CcEEEEecCCCCCHHHHHHH
Q 027856          137 ---STEDATAFAEREN-----TFFMETSALESMNVENAFTE  169 (217)
Q Consensus       137 ---~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~~  169 (217)
                         ..++...++...+     .+++++||++|.|+.++|+.
T Consensus       177 ~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~  217 (434)
T 1zun_B          177 FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER  217 (434)
T ss_dssp             HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred             HHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence               1244555666666     67999999999999886443

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.84  E-value=6.6e-21  Score=152.61  Aligned_cols=147  Identities=10%  Similarity=0.058  Sum_probs=105.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEE
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d   94 (217)
                      +|+++|++++|||||+++|+      .  ...+.+  .....+......+.+|||||+++|.......+..+|++++|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~------~--~giTi~--~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG------K--KGTSSD--ITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS------E--EEEESS--SEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHH------h--CCEEEE--eeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            99999999999999999998      1  111222  2223333334579999999999998888888899999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCcE-EEEEe-CCCCCCccCCC--HHHHHHHHHHc---CCcEEE--EecCC---CCC
Q 027856           95 VTRHVTFENVERWLKELRDHTDSNIVI-MLVGN-KADLRHLRAVS--TEDATAFAERE---NTFFME--TSALE---SMN  162 (217)
Q Consensus        95 ~~~~~s~~~~~~~~~~l~~~~~~~~p~-ivv~n-K~D~~~~~~~~--~~~~~~~~~~~---~~~~~~--~Sa~~---~~~  162 (217)
                       +... ......++..+...   +.|. ++++| |+|+ +.+...  .+++.+++...   .+++++  +||++   +.|
T Consensus        93 -~~g~-~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g  166 (370)
T 2elf_A           93 -PQGL-DAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG  166 (370)
T ss_dssp             -TTCC-CHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred             -CCCC-cHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence             5432 33334455555443   6676 88999 9998 432211  13444444443   367999  99999   999


Q ss_pred             HHHHHHHHHHHHHHH
Q 027856          163 VENAFTEVLTQIYRV  177 (217)
Q Consensus       163 i~~~~~~i~~~~~~~  177 (217)
                      ++++++.|.+.+...
T Consensus       167 i~~L~~~l~~~~~~~  181 (370)
T 2elf_A          167 VDELKARINEVAEKI  181 (370)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccc
Confidence            999999999887654

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.84  E-value=1.7e-20  Score=156.40  Aligned_cols=116  Identities=21%  Similarity=0.164  Sum_probs=83.6

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcC------------------CC----CCcccceeEeEEEEEEECCeEEEEEEEe
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEF------------------SL----ESKSTIGVEFATRSIRCDDKIVKAQIWD   68 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~D   68 (217)
                      ....+|+++|++|+|||||+++|+...-                  ..    ......+.......+.+.+  +.++|||
T Consensus        11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liD   88 (528)
T 3tr5_A           11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLD   88 (528)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEEC
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEE
Confidence            3568999999999999999999972110                  00    0001112222233344444  6899999


Q ss_pred             CCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856           69 TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        69 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  132 (217)
                      |||+..+...+..++..+|++++|+|+++..+.+....|. .+..   .++|+++|+||+|+..
T Consensus        89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~---~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL---RHTPIMTFINKMDRDT  148 (528)
T ss_dssp             CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT---TTCCEEEEEECTTSCC
T ss_pred             CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH---cCCCEEEEEeCCCCcc
Confidence            9999999998999999999999999999877666554443 3333   3789999999999864

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.83  E-value=6.9e-21  Score=154.74  Aligned_cols=148  Identities=17%  Similarity=0.137  Sum_probs=103.3

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhC--------cCCCC--C-----cccceeEeEEEEEEECCeEEEEEEEeCCChhhh
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRN--------EFSLE--S-----KSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY   75 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~--------~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   75 (217)
                      ...++|+++|++++|||||+++|++.        .+...  .     ..+.+.+.......+......+.||||||++.|
T Consensus         9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f   88 (405)
T 2c78_A            9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY   88 (405)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence            45799999999999999999999973        11110  0     012233333333444444468899999999999


Q ss_pred             hhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCccC---CCHHHHHHHHHHcC--
Q 027856           76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV-IMLVGNKADLRHLRA---VSTEDATAFAEREN--  149 (217)
Q Consensus        76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~--  149 (217)
                      ...+...+..+|++++|+|+++....+. ..++..+...   +.| +++++||+|+.+..+   ...+++.+++...+  
T Consensus        89 ~~~~~~~~~~aD~~ilVvda~~g~~~qt-~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~  164 (405)
T 2c78_A           89 IKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP  164 (405)
T ss_dssp             HHHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhccc
Confidence            8888889999999999999988754333 4455555443   677 889999999974211   11234555666554  


Q ss_pred             ---CcEEEEecCCCCC
Q 027856          150 ---TFFMETSALESMN  162 (217)
Q Consensus       150 ---~~~~~~Sa~~~~~  162 (217)
                         .+++++||++|.|
T Consensus       165 ~~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          165 GDEVPVIRGSALLALE  180 (405)
T ss_dssp             TTTSCEEECCHHHHHH
T ss_pred             ccCCCEEEccHHHhhh
Confidence               5799999999977

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.83  E-value=1.4e-21  Score=159.97  Aligned_cols=155  Identities=17%  Similarity=0.203  Sum_probs=103.0

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhC--cCCCCC-----------------------------cccceeEeEEEEEEECC
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRN--EFSLES-----------------------------KSTIGVEFATRSIRCDD   59 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~--~~~~~~-----------------------------~~~~~~~~~~~~~~~~~   59 (217)
                      ...++|+++|++++|||||+++|+..  .+....                             ....+.+..  ...++.
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~--~~~~~~   81 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLT--FMRFET   81 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-------------CEEEC
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEee--EEEEec
Confidence            35689999999999999999999875  222110                             111222222  223333


Q ss_pred             eEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhh----cCCC-CcEEEEEeCCCCCCcc
Q 027856           60 KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDH----TDSN-IVIMLVGNKADLRHLR  134 (217)
Q Consensus        60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~----~~~~-~p~ivv~nK~D~~~~~  134 (217)
                      ....+.||||||++.|...+..++..+|++|+|+|+++ .+++.+..|.......    ...+ .++++++||+|+.+..
T Consensus        82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~  160 (435)
T 1jny_A           82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP  160 (435)
T ss_dssp             SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred             CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc
Confidence            44689999999999999999999999999999999998 5565432221111111    1114 4689999999997621


Q ss_pred             ------CCCHHHHHHHHHHcC-----CcEEEEecCCCCCHHHHHH
Q 027856          135 ------AVSTEDATAFAEREN-----TFFMETSALESMNVENAFT  168 (217)
Q Consensus       135 ------~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~  168 (217)
                            +...+++.+++...+     ++++++||++|.|+.++++
T Consensus       161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence                  112344566666655     6799999999999986654

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.83  E-value=5e-20  Score=155.30  Aligned_cols=158  Identities=18%  Similarity=0.183  Sum_probs=106.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCC----cccceeEeEEEEE------------EECCeEEEEEEEeCCChhhh
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLES----KSTIGVEFATRSI------------RCDDKIVKAQIWDTAGQERY   75 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~----~~~~~~~~~~~~~------------~~~~~~~~~~l~Dt~G~~~~   75 (217)
                      ..++|+++|++++|||||+++|++..+....    ..+.+..+.....            .++.....++||||||++.|
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            3579999999999999999999987653322    1222222211100            00001125899999999999


Q ss_pred             hhhhhhhhcCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCC-------------H-
Q 027856           76 RAITSAYYRGAVGALLVYDVTR---HVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS-------------T-  138 (217)
Q Consensus        76 ~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~-------------~-  138 (217)
                      ...+...+..+|++++|+|+++   +.+++.+.    .+..   .+.|+++++||+|+.......             . 
T Consensus        84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~  156 (594)
T 1g7s_A           84 TTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ  156 (594)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence            9988888999999999999999   55554433    2222   378999999999996421100             0 


Q ss_pred             --H-------HHHHHHHHcC---------------CcEEEEecCCCCCHHHHHHHHHHHHHH
Q 027856          139 --E-------DATAFAEREN---------------TFFMETSALESMNVENAFTEVLTQIYR  176 (217)
Q Consensus       139 --~-------~~~~~~~~~~---------------~~~~~~Sa~~~~~i~~~~~~i~~~~~~  176 (217)
                        +       +........+               ++++++||++|.|+.+++++|...+..
T Consensus       157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~  218 (594)
T 1g7s_A          157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence              0       1111112222               369999999999999999999987764

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.83  E-value=6.2e-20  Score=145.76  Aligned_cols=120  Identities=18%  Similarity=0.187  Sum_probs=94.4

Q ss_pred             eEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECC----------ChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCC
Q 027856           60 KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVT----------RHVTFENVERWLKELRDHT-DSNIVIMLVGNKA  128 (217)
Q Consensus        60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~  128 (217)
                      ..+.+.+|||+|++.++.+|..++++++++|+|||++          +..+++....|+..+.... ..+.|+++|+||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            5689999999999999999999999999999999998          7788888888888876542 2579999999999


Q ss_pred             CCCCccC--C-------------------CHHHHHHHHHH----------------cCCcEEEEecCCCCCHHHHHHHHH
Q 027856          129 DLRHLRA--V-------------------STEDATAFAER----------------ENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus       129 D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~~~~~i~  171 (217)
                      |+.+++.  +                   +.+++..++..                ..+.++++||+++.|++++|+++.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            9854321  1                   14566666432                123468999999999999999999


Q ss_pred             HHHHHHHh
Q 027856          172 TQIYRVVS  179 (217)
Q Consensus       172 ~~~~~~~~  179 (217)
                      +.+.+...
T Consensus       341 ~~I~~~~l  348 (354)
T 2xtz_A          341 ETLRRRNL  348 (354)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98876543

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.83  E-value=7e-20  Score=143.55  Aligned_cols=124  Identities=16%  Similarity=0.189  Sum_probs=99.0

Q ss_pred             EEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECC----------ChhhHHHHHHHHHHHHhhc-CCCCc
Q 027856           52 TRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVT----------RHVTFENVERWLKELRDHT-DSNIV  120 (217)
Q Consensus        52 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~l~~~~-~~~~p  120 (217)
                      ...+.+++  +.+.+|||+|++.++..|..++++++++|+|+|++          +..++.+...|+..+.... ..+.|
T Consensus       159 ~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~  236 (327)
T 3ohm_A          159 EYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSS  236 (327)
T ss_dssp             EEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCE
T ss_pred             EEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCce
Confidence            33444444  78999999999999999999999999999999765          5566777666777665432 25799


Q ss_pred             EEEEEeCCCCCCcc----------------CCCHHHHHHHHH----------HcCCcEEEEecCCCCCHHHHHHHHHHHH
Q 027856          121 IMLVGNKADLRHLR----------------AVSTEDATAFAE----------RENTFFMETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       121 ~ivv~nK~D~~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  174 (217)
                      +++++||+|+.+++                ..+.+++.+++.          ..++.++++||+++.|++.+|..+.+.+
T Consensus       237 iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~I  316 (327)
T 3ohm_A          237 VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTI  316 (327)
T ss_dssp             EEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             EEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHH
Confidence            99999999996543                467788887753          3456789999999999999999999988


Q ss_pred             HHH
Q 027856          175 YRV  177 (217)
Q Consensus       175 ~~~  177 (217)
                      .+.
T Consensus       317 l~~  319 (327)
T 3ohm_A          317 LQL  319 (327)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            864

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.82  E-value=1.6e-20  Score=146.61  Aligned_cols=163  Identities=13%  Similarity=0.112  Sum_probs=104.9

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcc----cce----------------------eEe------------
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKS----TIG----------------------VEF------------   50 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~----~~~----------------------~~~------------   50 (217)
                      +....++|+|+|.+|+|||||+++|++..+.+....    ..+                      .+.            
T Consensus        22 ~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~  101 (299)
T 2aka_B           22 ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETD  101 (299)
T ss_dssp             TTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHH
T ss_pred             CCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHH
Confidence            345678999999999999999999999887432110    011                      000            


Q ss_pred             -----------EEEEEEEC-CeEEEEEEEeCCChh-------------hhhhhhhhhhcCCcEEE-EEEECCChhhHHHH
Q 027856           51 -----------ATRSIRCD-DKIVKAQIWDTAGQE-------------RYRAITSAYYRGAVGAL-LVYDVTRHVTFENV  104 (217)
Q Consensus        51 -----------~~~~~~~~-~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~ii-~v~d~~~~~s~~~~  104 (217)
                                 ....+.+. .....+.||||||..             .+......++..++.++ +|+|+++..+....
T Consensus       102 ~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~  181 (299)
T 2aka_B          102 RVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA  181 (299)
T ss_dssp             HHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH
T ss_pred             HhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH
Confidence                       00000000 012578999999952             45566777888888766 79999876544433


Q ss_pred             HHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH--cC-CcEEEEecCCCCCHHHHHHHHHHHH
Q 027856          105 ERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAER--EN-TFFMETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       105 ~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~~i~~~~~~i~~~~  174 (217)
                      ..+...+..   .+.|+++|+||+|+.+......+.++.....  .+ .+++++||++|.|++++|+.+.+..
T Consensus       182 ~~~~~~~~~---~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~  251 (299)
T 2aka_B          182 LKIAKEVDP---QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER  251 (299)
T ss_dssp             HHHHHHHCT---TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred             HHHHHHhCC---CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence            334444432   4789999999999976443223322211001  12 3578899999999999999998743

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.82  E-value=1.8e-20  Score=158.78  Aligned_cols=154  Identities=16%  Similarity=0.130  Sum_probs=101.1

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCc-----------------------------ccceeEeEEEEEEECCeE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESK-----------------------------STIGVEFATRSIRCDDKI   61 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~   61 (217)
                      ...++|+++|++|+|||||+++|++........                             ...|++.......+....
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~  244 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  244 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence            457899999999999999999999764321110                             011222222222233334


Q ss_pred             EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhh---H---HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC
Q 027856           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVT---F---ENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA  135 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~  135 (217)
                      ..+.||||||++.+...+...+..+|++|+|+|++++..   +   ......+..+...  ...|+++|+||+|+.+.+.
T Consensus       245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l--gi~~iIVVvNKiDl~~~~~  322 (611)
T 3izq_1          245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQ  322 (611)
T ss_dssp             CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT--TCCEEEEEEECTTTTTTCH
T ss_pred             ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc--CCCeEEEEEecccccchhH
Confidence            689999999999999999999999999999999987521   0   0111112222221  1245999999999976332


Q ss_pred             CCHH----HHHHHHHHc-----CCcEEEEecCCCCCHHHH
Q 027856          136 VSTE----DATAFAERE-----NTFFMETSALESMNVENA  166 (217)
Q Consensus       136 ~~~~----~~~~~~~~~-----~~~~~~~Sa~~~~~i~~~  166 (217)
                      ...+    ++..++...     +++++++||++|.|+.++
T Consensus       323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            2222    233344433     357999999999999876

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.81  E-value=6.1e-22  Score=163.30  Aligned_cols=155  Identities=15%  Similarity=0.212  Sum_probs=106.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..++|+++|++++|||||+++|.+..+.....+..+.+.....+..++  ..++||||||++.|...+...+..+|++++
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL   80 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVL   80 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence            457899999999999999999998765544333333222222232333  478999999999999998888999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCcc--CCCHH--HHHHHHHHcC--CcEEEEecCCCCCHHH
Q 027856           92 VYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLR--AVSTE--DATAFAEREN--TFFMETSALESMNVEN  165 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~--~~~~~--~~~~~~~~~~--~~~~~~Sa~~~~~i~~  165 (217)
                      |+|+++....+..+.| ..+..   .+.|+++++||+|+...+  .+..+  +...+...++  ++++++||++|.|+++
T Consensus        81 VVda~~g~~~qT~e~l-~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~e  156 (501)
T 1zo1_I           81 VVAADDGVMPQTIEAI-QHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDE  156 (501)
T ss_dssp             EEETTTBSCTTTHHHH-HHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTT
T ss_pred             EeecccCccHHHHHHH-HHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcch
Confidence            9999884322222222 22222   378999999999996421  11100  0000112222  6799999999999999


Q ss_pred             HHHHHHH
Q 027856          166 AFTEVLT  172 (217)
Q Consensus       166 ~~~~i~~  172 (217)
                      +|+++..
T Consensus       157 Lle~I~~  163 (501)
T 1zo1_I          157 LLDAILL  163 (501)
T ss_dssp             HHHHTTT
T ss_pred             hhhhhhh
Confidence            9999874

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.81  E-value=9.7e-21  Score=156.21  Aligned_cols=155  Identities=20%  Similarity=0.186  Sum_probs=90.0

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhC--cCCC-----------------------------CCcccceeEeEEEEEEECC
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRN--EFSL-----------------------------ESKSTIGVEFATRSIRCDD   59 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~   59 (217)
                      ...++|+++|+.++|||||+++|+..  .+..                             ......+++.....+..++
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            45789999999999999999999752  1110                             0001112222222333333


Q ss_pred             eEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChh---hHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCcc-
Q 027856           60 KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV---TFENVERWLKELRDHTDSNIV-IMLVGNKADLRHLR-  134 (217)
Q Consensus        60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~-  134 (217)
                        ..+.||||||++.|...+...+..+|++|+|+|+++..   +|+....+.+.+......++| +++++||+|+.... 
T Consensus       121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~  198 (467)
T 1r5b_A          121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW  198 (467)
T ss_dssp             --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred             --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence              68899999999999988888899999999999999863   222111222222211123676 99999999995421 


Q ss_pred             -----CCCHHHHHHHHHHc-------CCcEEEEecCCCCCHHHHH
Q 027856          135 -----AVSTEDATAFAERE-------NTFFMETSALESMNVENAF  167 (217)
Q Consensus       135 -----~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~  167 (217)
                           ....+++..++...       +++++++||++|.|+.++|
T Consensus       199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence                 11123455555555       3559999999999998866

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.81  E-value=2.9e-19  Score=132.47  Aligned_cols=159  Identities=19%  Similarity=0.178  Sum_probs=100.3

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChh----------hhhhhh
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE----------RYRAIT   79 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~   79 (217)
                      .....+|+++|++|+|||||+++|++..+.....++.+.......+.+++   .+.+|||||..          .+....
T Consensus        23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~   99 (210)
T 1pui_A           23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL   99 (210)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence            34568999999999999999999998875444445555554444444433   56799999963          233333


Q ss_pred             hhhh---cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC--CCHHHHHHHHHHcC--CcE
Q 027856           80 SAYY---RGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA--VSTEDATAFAEREN--TFF  152 (217)
Q Consensus        80 ~~~~---~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~--~~~  152 (217)
                      ..++   ..++++++++|++++.+.... .....+..   .+.|++++.||+|+....+  ...+.+..++...+  +.+
T Consensus       100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~  175 (210)
T 1pui_A          100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQ-QMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQV  175 (210)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEE
T ss_pred             HHHHHhhhcccEEEEEEECCCCCchhHH-HHHHHHHH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCce
Confidence            3344   578999999999886554321 12222222   3788999999999865321  11234445555443  458


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHH
Q 027856          153 METSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       153 ~~~Sa~~~~~i~~~~~~i~~~~~  175 (217)
                      +++||+++.++++++++|.+.+.
T Consensus       176 ~~~Sal~~~~~~~l~~~l~~~~~  198 (210)
T 1pui_A          176 ETFSSLKKQGVDKLRQKLDTWFS  198 (210)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHC
T ss_pred             EEEeecCCCCHHHHHHHHHHHHh
Confidence            89999999999999999987654

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.81  E-value=9.8e-20  Score=160.59  Aligned_cols=161  Identities=17%  Similarity=0.114  Sum_probs=107.4

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcC-------CC-------CCcccceeEeEEEEEEECCeEEEEEEEeCCChhh
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEF-------SL-------ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER   74 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~-------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   74 (217)
                      .....++|+++|++++|||||+++|++...       ..       ....+.|++.....+.++.....+.||||||++.
T Consensus       292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed  371 (1289)
T 3avx_A          292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD  371 (1289)
T ss_dssp             CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred             ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence            345679999999999999999999987410       00       0112333333333344444446899999999999


Q ss_pred             hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCccCC---CHHHHHHHHHHcC-
Q 027856           75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV-IMLVGNKADLRHLRAV---STEDATAFAEREN-  149 (217)
Q Consensus        75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~-  149 (217)
                      |.......+..+|++|+|+|+++....+. ..++..+...   ++| +++++||+|+.+..+.   ..+++.+++...+ 
T Consensus       372 F~~~mi~gas~AD~aILVVDAtdGv~~QT-rEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~  447 (1289)
T 3avx_A          372 YVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF  447 (1289)
T ss_dssp             HHHHHHHTSCCCSEEEEEEETTTCSCTTH-HHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHhhCCEEEEEEcCCccCcHHH-HHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence            99888889999999999999988643332 2333444433   677 7899999999752211   1234556666654 


Q ss_pred             ----CcEEEEecCCC--------CCHHHHHHHHHHH
Q 027856          150 ----TFFMETSALES--------MNVENAFTEVLTQ  173 (217)
Q Consensus       150 ----~~~~~~Sa~~~--------~~i~~~~~~i~~~  173 (217)
                          ++++++||++|        .|+.++|+.|.+.
T Consensus       448 ~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~  483 (1289)
T 3avx_A          448 PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSY  483 (1289)
T ss_dssp             CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             cccceeEEEEEeccCCCCCccccccchhhHhHHhhh
Confidence                57999999999        3466666666543

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.80  E-value=2.7e-19  Score=140.72  Aligned_cols=116  Identities=16%  Similarity=0.217  Sum_probs=94.4

Q ss_pred             EEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECC----------ChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCC
Q 027856           61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVT----------RHVTFENVERWLKELRDHT-DSNIVIMLVGNKAD  129 (217)
Q Consensus        61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D  129 (217)
                      .+.+.+|||+|++.++..|..++++++++|+|+|++          +..++.+...|+..+.... ..+.|+++++||+|
T Consensus       160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D  239 (340)
T 4fid_A          160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD  239 (340)
T ss_dssp             SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred             eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence            478999999999999999999999999999999998          6677887777777765432 35799999999999


Q ss_pred             CCCcc---------------CCCHHHHHHHHHH---------------------------cCCcEEEEecCCCCCHHHHH
Q 027856          130 LRHLR---------------AVSTEDATAFAER---------------------------ENTFFMETSALESMNVENAF  167 (217)
Q Consensus       130 ~~~~~---------------~~~~~~~~~~~~~---------------------------~~~~~~~~Sa~~~~~i~~~~  167 (217)
                      +.+++               ....+++.+++..                           ..+.++++||++..|++.+|
T Consensus       240 L~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF  319 (340)
T 4fid_A          240 LFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVF  319 (340)
T ss_dssp             HHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHH
T ss_pred             hhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHH
Confidence            85421               1246666555433                           13668999999999999999


Q ss_pred             HHHHHHHHH
Q 027856          168 TEVLTQIYR  176 (217)
Q Consensus       168 ~~i~~~~~~  176 (217)
                      ..+.+.+++
T Consensus       320 ~~v~~~Il~  328 (340)
T 4fid_A          320 MLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999988

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.80  E-value=6e-20  Score=151.14  Aligned_cols=150  Identities=15%  Similarity=0.136  Sum_probs=101.2

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCc--CCCC------------------C-----------cccceeEeEEEEEEECC
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNE--FSLE------------------S-----------KSTIGVEFATRSIRCDD   59 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~--~~~~------------------~-----------~~~~~~~~~~~~~~~~~   59 (217)
                      ...++|+++|++++|||||+++|++..  +...                  +           ....+.+....  .++.
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~--~~~~   82 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALW--KFET   82 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCE--EEEC
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEE--EEec
Confidence            457999999999999999999998741  1110                  0           01122222222  2333


Q ss_pred             eEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhh---H----HHHHHHHHHHHhhcCCCCc-EEEEEeCCCCC
Q 027856           60 KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVT---F----ENVERWLKELRDHTDSNIV-IMLVGNKADLR  131 (217)
Q Consensus        60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~----~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~  131 (217)
                      ....+.||||||++.|...+...+..+|++|+|+|+++...   |    +..+ .+..+..   .+.| +++|+||+|+.
T Consensus        83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~-~~~~~~~---~~v~~iivviNK~Dl~  158 (458)
T 1f60_A           83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTRE-HALLAFT---LGVRQLIVAVNKMDSV  158 (458)
T ss_dssp             SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHH-HHHHHHH---TTCCEEEEEEECGGGG
T ss_pred             CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHH-HHHHHHH---cCCCeEEEEEEccccc
Confidence            34689999999999999999899999999999999987632   2    2222 2222222   2555 89999999997


Q ss_pred             CccC----CCHHHHHHHHHHcC-----CcEEEEecCCCCCHHHH
Q 027856          132 HLRA----VSTEDATAFAEREN-----TFFMETSALESMNVENA  166 (217)
Q Consensus       132 ~~~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~  166 (217)
                      +...    ...+++..++...+     ++++++||++|.|+.++
T Consensus       159 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          159 KWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            3211    11234455555554     67999999999998754

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.79  E-value=1.3e-18  Score=133.41  Aligned_cols=126  Identities=17%  Similarity=0.149  Sum_probs=86.2

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCC-CcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhh------
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLE-SKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYY------   83 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~------   83 (217)
                      ...++|+++|.+|+|||||+++|++...... ..+..+.......+..++  ..+.+|||||+..+......++      
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence            3579999999999999999999999876332 222233334444455555  4899999999866544433333      


Q ss_pred             ---cCCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCC--CcEEEEEeCCCCCCccCCCHH
Q 027856           84 ---RGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSN--IVIMLVGNKADLRHLRAVSTE  139 (217)
Q Consensus        84 ---~~~d~ii~v~d~~~~~s~~~~-~~~~~~l~~~~~~~--~p~ivv~nK~D~~~~~~~~~~  139 (217)
                         ..+|++++|++++... +... ..|+..+....+.+  .|+++|+||+|+...+....+
T Consensus       112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e  172 (262)
T 3def_A          112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYE  172 (262)
T ss_dssp             TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHH
T ss_pred             HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHH
Confidence               2789999999987654 3222 45677776655433  489999999999654444443

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.79  E-value=1.6e-18  Score=148.96  Aligned_cols=164  Identities=13%  Similarity=0.198  Sum_probs=109.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCC-ccccee-EeE------EEEEEE--------------------------
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGV-EFA------TRSIRC--------------------------   57 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~-~~~------~~~~~~--------------------------   57 (217)
                      ..++|+|+|.+|+|||||+|+|++..+.+.. .+++.. ...      ..+..+                          
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            4689999999999999999999998765432 222210 000      001111                          


Q ss_pred             --------------------CCeE--EEEEEEeCCChhh---hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHH
Q 027856           58 --------------------DDKI--VKAQIWDTAGQER---YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR  112 (217)
Q Consensus        58 --------------------~~~~--~~~~l~Dt~G~~~---~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~  112 (217)
                                          ....  ..+.||||||...   .......++..+|++++|+|++++.+..+...|...+.
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~  227 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK  227 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence                                0000  2589999999654   33456678899999999999998887776665655543


Q ss_pred             hhcCCCCcEEEEEeCCCCCCccCCCHH---H-------HHHH----HH-H--------cCCcEEEEecC-----------
Q 027856          113 DHTDSNIVIMLVGNKADLRHLRAVSTE---D-------ATAF----AE-R--------ENTFFMETSAL-----------  158 (217)
Q Consensus       113 ~~~~~~~p~ivv~nK~D~~~~~~~~~~---~-------~~~~----~~-~--------~~~~~~~~Sa~-----------  158 (217)
                      .   .+.|+++|+||+|+.....++.+   +       ....    .. .        ....++++||+           
T Consensus       228 ~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~  304 (695)
T 2j69_A          228 G---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ  304 (695)
T ss_dssp             T---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred             h---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence            3   26789999999999654311111   1       1111    11 1        12359999999           


Q ss_pred             ---CCCCHHHHHHHHHHHHHHHH
Q 027856          159 ---ESMNVENAFTEVLTQIYRVV  178 (217)
Q Consensus       159 ---~~~~i~~~~~~i~~~~~~~~  178 (217)
                         ++.|+.++++.+.+.+.+.+
T Consensus       305 ~~~~~~Gi~~L~~~L~~~l~~~~  327 (695)
T 2j69_A          305 ADLDGTGFPKFMDSLNTFLTRER  327 (695)
T ss_dssp             CCCTTSSHHHHHHHHHHHHHHTH
T ss_pred             hhhhccCHHHHHHHHHHHHHHhH
Confidence               99999999999988775543

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.78  E-value=1.5e-19  Score=144.83  Aligned_cols=161  Identities=12%  Similarity=0.109  Sum_probs=107.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEE--------------------------------------
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATR--------------------------------------   53 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~--------------------------------------   53 (217)
                      ..++|+|+|.+|||||||+++|++..+.+....+.+......                                      
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            456999999999999999999999877443322221110000                                      


Q ss_pred             --------------EEEE-CCeEEEEEEEeCCChhhh-------------hhhhhhhhcCCcEEEEEEECCChhhHHHHH
Q 027856           54 --------------SIRC-DDKIVKAQIWDTAGQERY-------------RAITSAYYRGAVGALLVYDVTRHVTFENVE  105 (217)
Q Consensus        54 --------------~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~  105 (217)
                                    .+.+ ......+.+|||||...+             ..+...++.++|++|+|+|..+.....  .
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~  190 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S  190 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred             HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence                          1110 011136899999996554             566778899999999999875433221  3


Q ss_pred             HHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHH
Q 027856          106 RWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       106 ~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  174 (217)
                      .|+..+......+.|+++|+||+|+.+......+.+.......+..|+.+++.++.++++.++.+....
T Consensus       191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~~~  259 (360)
T 3t34_A          191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAARK  259 (360)
T ss_dssp             HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHHHH
Confidence            345555555555789999999999987555444444444445677899999999988887766654433

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.78  E-value=1.7e-18  Score=148.34  Aligned_cols=116  Identities=18%  Similarity=0.144  Sum_probs=82.8

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCC------------------cccceeEeEEEEEEECCeEEEEEEEeCCC
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLES------------------KSTIGVEFATRSIRCDDKIVKAQIWDTAG   71 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   71 (217)
                      .....+|+++|+.|+|||||+++|++.......                  ....+.......+...  .+.+++|||||
T Consensus         6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~--~~~~nliDTpG   83 (665)
T 2dy1_A            6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--GHRVFLLDAPG   83 (665)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--TEEEEEEECCC
T ss_pred             cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC--CEEEEEEeCCC
Confidence            455789999999999999999999954322100                  0011222222233333  47899999999


Q ss_pred             hhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027856           72 QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        72 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~  131 (217)
                      +..+......++..+|++++|+|+.+...... ..++..+..   .+.|+++++||+|+.
T Consensus        84 ~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~---~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           84 YGDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER---LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             SGGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred             ccchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH---ccCCEEEEecCCchh
Confidence            99998888899999999999999887654433 344444443   278999999999986

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.78  E-value=2.2e-18  Score=139.40  Aligned_cols=160  Identities=17%  Similarity=0.126  Sum_probs=111.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhh----hhhhhhh---hhcCC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER----YRAITSA---YYRGA   86 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~---~~~~~   86 (217)
                      -.|+++|++|||||||+++|++........+..+.......+.+++ ...+.+||+||...    +..+...   .+..+
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era  236 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART  236 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence            3479999999999999999998753222222223333344454443 24789999999632    1112222   24579


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHH
Q 027856           87 VGALLVYDVTRHVTFENVERWLKELRDHTD--SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVE  164 (217)
Q Consensus        87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  164 (217)
                      +.+++++|++ ...+..+..+..++..+..  ...|.++++||+|+...  ...+++.+.....+..++.+||+++.|++
T Consensus       237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~  313 (416)
T 1udx_A          237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLP  313 (416)
T ss_dssp             SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred             HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence            9999999997 5556667667666655421  25789999999998753  22344445555567889999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027856          165 NAFTEVLTQIYRV  177 (217)
Q Consensus       165 ~~~~~i~~~~~~~  177 (217)
                      +++++|.+.+.+.
T Consensus       314 eL~~~i~~~l~~~  326 (416)
T 1udx_A          314 ALKEALHALVRST  326 (416)
T ss_dssp             HHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999888654

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.77  E-value=1.7e-18  Score=136.14  Aligned_cols=162  Identities=14%  Similarity=0.140  Sum_probs=97.8

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCc----ccc---eeEeE--------------------------------
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESK----STI---GVEFA--------------------------------   51 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~----~~~---~~~~~--------------------------------   51 (217)
                      ...++|+|+|.+|+|||||+|+|++..+.+...    ...   .....                                
T Consensus        22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (315)
T 1jwy_B           22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE  101 (315)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence            456899999999999999999999988633221    011   00000                                


Q ss_pred             ------------------EEEEE-ECCeEEEEEEEeCCChhh-------------hhhhhhhhhcCCcEEEEEEECCChh
Q 027856           52 ------------------TRSIR-CDDKIVKAQIWDTAGQER-------------YRAITSAYYRGAVGALLVYDVTRHV   99 (217)
Q Consensus        52 ------------------~~~~~-~~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~   99 (217)
                                        ...+. .......+.||||||...             +......++..+|++++|+|..+..
T Consensus       102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~  181 (315)
T 1jwy_B          102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD  181 (315)
T ss_dssp             HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred             HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence                              00000 011124789999999642             4566677889999999999974322


Q ss_pred             -hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCC------CCCHHHHHHHHHH
Q 027856          100 -TFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALE------SMNVENAFTEVLT  172 (217)
Q Consensus       100 -s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------~~~i~~~~~~i~~  172 (217)
                       +......+...+.   ..+.|+++|+||+|+........+.+.......+..++++++..      +.|+.++++.+.+
T Consensus       182 ~~~~~~~~i~~~~~---~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~  258 (315)
T 1jwy_B          182 LANSDALQLAKEVD---PEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEIL  258 (315)
T ss_dssp             STTCSHHHHHHHHC---SSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHhC---CCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHH
Confidence             1111112333332   24789999999999976443223322211111225577776554      6788888888776


Q ss_pred             HHH
Q 027856          173 QIY  175 (217)
Q Consensus       173 ~~~  175 (217)
                      .+.
T Consensus       259 ~~~  261 (315)
T 1jwy_B          259 YFK  261 (315)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            664

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.77  E-value=1.6e-18  Score=133.56  Aligned_cols=126  Identities=16%  Similarity=0.125  Sum_probs=82.3

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCC-cccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhh-------hh
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITS-------AY   82 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~~   82 (217)
                      ...++|+++|.+|+|||||+|+|++..+.... .+..+.......+...+  ..+.+|||||...+.....       .+
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~  114 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF  114 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHH
Confidence            35799999999999999999999998764322 12222222223333333  6899999999755432211       11


Q ss_pred             --hcCCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCC--CcEEEEEeCCCCCCccCCCHH
Q 027856           83 --YRGAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSN--IVIMLVGNKADLRHLRAVSTE  139 (217)
Q Consensus        83 --~~~~d~ii~v~d~~~~~s~~~~-~~~~~~l~~~~~~~--~p~ivv~nK~D~~~~~~~~~~  139 (217)
                        ...+|++++|+|++... +... ..|+..+....+.+  .|+++|+||+|+...+....+
T Consensus       115 ~~~~~~d~il~v~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~  175 (270)
T 1h65_A          115 LLDKTIDVLLYVDRLDAYR-VDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYD  175 (270)
T ss_dssp             TTTCEECEEEEEEESSCCC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHH
T ss_pred             hhcCCCCEEEEEEeCCCCc-CCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHH
Confidence              34789999999986532 3222 35777776554333  699999999999765443443

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.76  E-value=6.5e-20  Score=154.94  Aligned_cols=148  Identities=24%  Similarity=0.209  Sum_probs=82.0

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCC-----------------------------cccceeEeEEEEEEECCe
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLES-----------------------------KSTIGVEFATRSIRCDDK   60 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~   60 (217)
                      ....++|+++|++++|||||+++|++.......                             ....|++.......+...
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~  253 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD  253 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence            345789999999999999999999753110000                             001222333333333334


Q ss_pred             EEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCCh----------hhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCC
Q 027856           61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH----------VTFENVERWLKELRDHTDSNIV-IMLVGNKAD  129 (217)
Q Consensus        61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D  129 (217)
                      ...+.||||||++.|...+...+..+|++|+|+|++++          .+.+.    +..+...   ++| +++|+||+|
T Consensus       254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~----l~~~~~l---gip~iIvviNKiD  326 (592)
T 3mca_A          254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREH----AYLLRAL---GISEIVVSVNKLD  326 (592)
T ss_dssp             -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHH----HHHHHHS---SCCCEEEEEECGG
T ss_pred             CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHH----HHHHHHc---CCCeEEEEEeccc
Confidence            46899999999999988888889999999999999853          23222    2222222   555 899999999


Q ss_pred             CCCccCCC----HHHHHHHH-HHcCC-----cEEEEecCCCCCHH
Q 027856          130 LRHLRAVS----TEDATAFA-ERENT-----FFMETSALESMNVE  164 (217)
Q Consensus       130 ~~~~~~~~----~~~~~~~~-~~~~~-----~~~~~Sa~~~~~i~  164 (217)
                      +.+.....    ..++..+. ...++     +++++||++|.|+.
T Consensus       327 l~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          327 LMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             GGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             cccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            96522111    12333334 33344     69999999999997

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.76  E-value=1.2e-17  Score=143.63  Aligned_cols=119  Identities=18%  Similarity=0.222  Sum_probs=85.0

Q ss_pred             CCCCeeeEEEEEcCCCCCHHHHHHHHhhCc--C------CCC--C--------cccceeEeEEEEEEECCeEEEEEEEeC
Q 027856            8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNE--F------SLE--S--------KSTIGVEFATRSIRCDDKIVKAQIWDT   69 (217)
Q Consensus         8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~--~------~~~--~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt   69 (217)
                      .+.....+|+|+|++|+|||||+++|+...  +      ...  .        ....+.......+.+.+  +.++||||
T Consensus         7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liDT   84 (691)
T 1dar_A            7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDT   84 (691)
T ss_dssp             CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEECC
T ss_pred             CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEEC
Confidence            345678999999999999999999998421  1      000  0        11112222223333343  68999999


Q ss_pred             CChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856           70 AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        70 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  132 (217)
                      ||+..+...+..++..+|++++|+|+++..+.+....|... ..   .+.|+++|+||+|+..
T Consensus        85 PG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~-~~---~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           85 PGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA-EK---YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             CSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHH-HH---TTCCEEEEEECTTSTT
T ss_pred             cCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHH-HH---cCCCEEEEEECCCccc
Confidence            99999888889999999999999999998777766555543 33   2789999999999864

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.75  E-value=1.1e-17  Score=139.59  Aligned_cols=118  Identities=16%  Similarity=0.175  Sum_probs=79.3

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCC--------------------CcccceeEeEEEEEEECCeEEEEEEEeCC
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLE--------------------SKSTIGVEFATRSIRCDDKIVKAQIWDTA   70 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~   70 (217)
                      ...++|+++|++|+|||||+++|+...-...                    ...+.+++.......+....+.+.|||||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP   90 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP   90 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence            3568999999999999999999997421100                    00111222211122222233689999999


Q ss_pred             ChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856           71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        71 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  132 (217)
                      |+..|......++..+|++++|+|+++...... ..++..+..   .++|+++++||+|+..
T Consensus        91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~~---~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTRL---RDTPILTFMNKLDRDI  148 (529)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHTT---TTCCEEEEEECTTSCC
T ss_pred             CChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHHH---cCCCEEEEEcCcCCcc
Confidence            999988888889999999999999988643222 233333332   3789999999999864

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.75  E-value=4.1e-19  Score=138.69  Aligned_cols=162  Identities=19%  Similarity=0.272  Sum_probs=85.8

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhC-cCCCCC--------cccceeEeEEEEEEECCeEEEEEEEeCCCh-------h
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRN-EFSLES--------KSTIGVEFATRSIRCDDKIVKAQIWDTAGQ-------E   73 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-------~   73 (217)
                      ....++|+|+|++|+|||||+++|++. .++..+        .++.............+....+++||++|.       +
T Consensus        15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e   94 (301)
T 2qnr_A           15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD   94 (301)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence            345789999999999999999999876 433322        112211111122222444568999999997       4


Q ss_pred             hhhhhhh-------hhhc-------------CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCc
Q 027856           74 RYRAITS-------AYYR-------------GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL  133 (217)
Q Consensus        74 ~~~~~~~-------~~~~-------------~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~  133 (217)
                      .+..+..       .++.             .+++++++.+.+.. +++.+.  ...+.... ...++++|+||.|+...
T Consensus        95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~--~~~l~~l~-~~~~iilV~~K~Dl~~~  170 (301)
T 2qnr_A           95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLD--VAFMKAIH-NKVNIVPVIAKADTLTL  170 (301)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHH--HHHHHHHT-TTSCEEEEECCGGGSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHH--HHHHHHHH-hcCCEEEEEEeCCCCCH
Confidence            4444333       3332             23446666654321 122222  12222222 36799999999999764


Q ss_pred             cCC--CHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 027856          134 RAV--STEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR  176 (217)
Q Consensus       134 ~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  176 (217)
                      +++  ..+++.+++..+++.++++||+++ |++++|..+.+.+.+
T Consensus       171 ~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~  214 (301)
T 2qnr_A          171 KERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA  214 (301)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence            332  235677788888999999999999 999999999988753

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.74  E-value=1.7e-18  Score=139.74  Aligned_cols=85  Identities=20%  Similarity=0.242  Sum_probs=47.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEE--EE-------------------ECC-eEEEEEEEeCCC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRS--IR-------------------CDD-KIVKAQIWDTAG   71 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~--~~-------------------~~~-~~~~~~l~Dt~G   71 (217)
                      ++|+++|.+|+|||||+|+|++........+..+.+.....  +.                   +++ ..+.+.||||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            58999999999999999999998732222222222222221  11                   122 247899999999


Q ss_pred             hhhh----hhhhh---hhhcCCcEEEEEEECCCh
Q 027856           72 QERY----RAITS---AYYRGAVGALLVYDVTRH   98 (217)
Q Consensus        72 ~~~~----~~~~~---~~~~~~d~ii~v~d~~~~   98 (217)
                      ....    ..+..   ..++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            7532    22222   456899999999999875

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.74  E-value=1.4e-16  Score=137.09  Aligned_cols=121  Identities=16%  Similarity=0.111  Sum_probs=85.0

Q ss_pred             CCCCeeeEEEEEcCCCCCHHHHHHHHhhCc--CCCC--------C--------cccceeEeEEEEEEEC-----CeEEEE
Q 027856            8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNE--FSLE--------S--------KSTIGVEFATRSIRCD-----DKIVKA   64 (217)
Q Consensus         8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~--~~~~--------~--------~~~~~~~~~~~~~~~~-----~~~~~~   64 (217)
                      .+.....+|+|+|+.|+|||||+++|+...  +...        .        ....+.......+.+.     +..+.+
T Consensus         5 ~~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i   84 (704)
T 2rdo_7            5 TPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRI   84 (704)
T ss_pred             CCcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeE
Confidence            345667999999999999999999997531  1110        0        0111222222223322     234799


Q ss_pred             EEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856           65 QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        65 ~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  132 (217)
                      +||||||+..|...+...++.+|++|+|+|+++....+....|.. +..   .+.|+++|+||+|+..
T Consensus        85 ~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~---~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           85 NIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-ANK---YKVPRIAFVNKMDRMG  148 (704)
T ss_pred             EEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HHH---cCCCEEEEEeCCCccc
Confidence            999999999998888889999999999999998766555444433 322   3789999999999854

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.73  E-value=7e-17  Score=138.85  Aligned_cols=118  Identities=16%  Similarity=0.170  Sum_probs=84.3

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhC--cCCCC---C-------------cccceeEeEEEEEEECCeEEEEEEEeCC
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRN--EFSLE---S-------------KSTIGVEFATRSIRCDDKIVKAQIWDTA   70 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~--~~~~~---~-------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~   70 (217)
                      +.....+|+++|++|+|||||+++|+..  .+...   .             ....+.......+.+.+  +.++|||||
T Consensus         6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTP   83 (693)
T 2xex_A            6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTP   83 (693)
T ss_dssp             CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCC
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECc
Confidence            4566799999999999999999999952  21100   0             01111122222333444  689999999


Q ss_pred             ChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856           71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        71 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  132 (217)
                      |+..+...+..+++.+|++++|+|+++..+......|.. +..   .+.|+++|+||+|+..
T Consensus        84 G~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           84 GHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLG  141 (693)
T ss_dssp             CCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred             CCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence            999888888889999999999999998877666555543 333   2789999999999864

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.73  E-value=5e-18  Score=137.44  Aligned_cols=160  Identities=16%  Similarity=0.204  Sum_probs=81.8

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCC--------cccceeEeEEEEEEECCeEEEEEEEeCCChhhhh-----
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLES--------KSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYR-----   76 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----   76 (217)
                      ....++|+|+|++|+|||||+++|++..+....        .++.+.......+...+....+++||++|.....     
T Consensus        28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~  107 (418)
T 2qag_C           28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC  107 (418)
T ss_dssp             -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------
T ss_pred             cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence            445788999999999999999999998763221        1222222111122223434578999999964321     


Q ss_pred             --h------------------hhhhhhcCCcEEEEEEECCCh-hhHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCcc
Q 027856           77 --A------------------ITSAYYRGAVGALLVYDVTRH-VTFENVE-RWLKELRDHTDSNIVIMLVGNKADLRHLR  134 (217)
Q Consensus        77 --~------------------~~~~~~~~~d~ii~v~d~~~~-~s~~~~~-~~~~~l~~~~~~~~p~ivv~nK~D~~~~~  134 (217)
                        .                  +...++..+++.+++|..... .++.... .|+..+.    .+.|+|+|+||+|+...+
T Consensus       108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~  183 (418)
T 2qag_C          108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPE  183 (418)
T ss_dssp             CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHH
Confidence              1                  112334455543344333322 2233332 4666554    378999999999997654


Q ss_pred             CCCH--HHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 027856          135 AVST--EDATAFAERENTFFMETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus       135 ~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  173 (217)
                      ++..  +++.+.+..+++.++++|+.++.++.++|..+...
T Consensus       184 ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~  224 (418)
T 2qag_C          184 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR  224 (418)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCCCC-----------------
T ss_pred             HHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence            4433  55667777889999999999999999877766643

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.73  E-value=2.1e-17  Score=131.67  Aligned_cols=125  Identities=18%  Similarity=0.208  Sum_probs=94.4

Q ss_pred             EEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCC----------hhhHHHHHHHHHHHHhh-cCCCCcE
Q 027856           53 RSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR----------HVTFENVERWLKELRDH-TDSNIVI  121 (217)
Q Consensus        53 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~l~~~-~~~~~p~  121 (217)
                      ..+.+++  +.+.+|||+|++.++..|..++++++++|+|+|+++          ..++.....|+..+... ...+.|+
T Consensus       194 ~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~pi  271 (362)
T 1zcb_A          194 YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI  271 (362)
T ss_dssp             EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred             EEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCE
Confidence            3444454  789999999999999999999999999999999999          67888888888877654 2357999


Q ss_pred             EEEEeCCCCCCcc----------------CCCHHHHHHHHH-----------HcCCcEEEEecCCCCCHHHHHHHHHHHH
Q 027856          122 MLVGNKADLRHLR----------------AVSTEDATAFAE-----------RENTFFMETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       122 ivv~nK~D~~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  174 (217)
                      ++++||.|+.+++                ..+.+++..++.           ..++.++++||+++.|+.++|+++.+.+
T Consensus       272 ILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i  351 (362)
T 1zcb_A          272 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI  351 (362)
T ss_dssp             EEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             EEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHH
Confidence            9999999996432                266777777662           2356799999999999999999999988


Q ss_pred             HHHHh
Q 027856          175 YRVVS  179 (217)
Q Consensus       175 ~~~~~  179 (217)
                      .+...
T Consensus       352 ~~~~l  356 (362)
T 1zcb_A          352 LHDNL  356 (362)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76543

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.72  E-value=2.8e-18  Score=133.99  Aligned_cols=134  Identities=16%  Similarity=0.110  Sum_probs=109.0

Q ss_pred             HHHHHHhhCcCC-CCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChh-hHHHHH
Q 027856           28 NLLSRFTRNEFS-LESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHV-TFENVE  105 (217)
Q Consensus        28 sli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~  105 (217)
                      +|+.+++.+.|. ..+.+|.+..+. ..+..++   .+.+||+  ++++..++..+++++|++|+|||++++. +++.+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            688889988888 788899985443 3322222   7899999  8899999999999999999999999987 788888


Q ss_pred             HHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcC--CcEEEEecCCCCCHHHHHHHHHH
Q 027856          106 RWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAEREN--TFFMETSALESMNVENAFTEVLT  172 (217)
Q Consensus       106 ~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~  172 (217)
                      .|+..+..   .++|+++|+||+|+.+.+.+  +++.+++..++  ..++++||++|.|++++|..+..
T Consensus       106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred             HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence            99988765   37999999999999764322  45666777666  88999999999999999987753

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.71  E-value=8.6e-17  Score=129.22  Aligned_cols=126  Identities=18%  Similarity=0.235  Sum_probs=100.4

Q ss_pred             EEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCC----------hhhHHHHHHHHHHHHhh-cCCCCcE
Q 027856           53 RSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR----------HVTFENVERWLKELRDH-TDSNIVI  121 (217)
Q Consensus        53 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~l~~~-~~~~~p~  121 (217)
                      ..+.+++  +.+.+|||+|++.++..|..++++++++|+|||+++          ..+++.+..|+..+... ...+.|+
T Consensus       210 ~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pi  287 (402)
T 1azs_C          210 TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISV  287 (402)
T ss_dssp             EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCE
T ss_pred             EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeE
Confidence            3444554  799999999999999999999999999999999999          88899999999888764 2367999


Q ss_pred             EEEEeCCCCCCccC---C---------------------------CHHHHHHHH-----HH--------cCCcEEEEecC
Q 027856          122 MLVGNKADLRHLRA---V---------------------------STEDATAFA-----ER--------ENTFFMETSAL  158 (217)
Q Consensus       122 ivv~nK~D~~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~Sa~  158 (217)
                      ++|+||+|+...+.   +                           ..+++..++     ..        ..+.++++||+
T Consensus       288 iLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~  367 (402)
T 1azs_C          288 ILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAV  367 (402)
T ss_dssp             EEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTT
T ss_pred             EEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEee
Confidence            99999999854321   1                           135555553     22        24568899999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhh
Q 027856          159 ESMNVENAFTEVLTQIYRVVSR  180 (217)
Q Consensus       159 ~~~~i~~~~~~i~~~~~~~~~~  180 (217)
                      ++.|++++|..+.+.+.+...+
T Consensus       368 d~~nV~~vF~~v~~~I~~~~l~  389 (402)
T 1azs_C          368 DTENIRRVFNDCRDIIQRMHLR  389 (402)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999888766543

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.69  E-value=8.6e-18  Score=134.16  Aligned_cols=159  Identities=14%  Similarity=0.111  Sum_probs=95.5

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCccc----cee----------------------E---------------
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKST----IGV----------------------E---------------   49 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~----~~~----------------------~---------------   49 (217)
                      ...++|+|+|.+|+|||||+++|++..+.+.....    .+.                      +               
T Consensus        29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i  108 (353)
T 2x2e_A           29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  108 (353)
T ss_dssp             CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence            34689999999999999999999998875322111    110                      0               


Q ss_pred             --------eEEEEEEEC-CeEEEEEEEeCCChh-------------hhhhhhhhhhcCCc-EEEEEEECCChhhHHHHHH
Q 027856           50 --------FATRSIRCD-DKIVKAQIWDTAGQE-------------RYRAITSAYYRGAV-GALLVYDVTRHVTFENVER  106 (217)
Q Consensus        50 --------~~~~~~~~~-~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~~  106 (217)
                              .....+.+. .....+.||||||..             .+..+...++...+ ++++|++++....-.....
T Consensus       109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~  188 (353)
T 2x2e_A          109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  188 (353)
T ss_dssp             HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred             cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence                    000011111 112578999999942             34556666776555 5555667655332222222


Q ss_pred             HHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHH--HHHcC-CcEEEEecCCCCCHHHHHHHHHH
Q 027856          107 WLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAF--AEREN-TFFMETSALESMNVENAFTEVLT  172 (217)
Q Consensus       107 ~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~--~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~  172 (217)
                      +...   ....+.|+++|+||+|+.+........+...  ....+ ..++++||+++.|+.++++.+.+
T Consensus       189 i~~~---~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          189 VAKE---VDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHH---HCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHH---hCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            3333   3335789999999999976433222211100  00122 24778999999999999999876

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.69  E-value=7.8e-16  Score=122.10  Aligned_cols=146  Identities=17%  Similarity=0.133  Sum_probs=91.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCe---------------EEEEEEEeCCChhhhh--
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK---------------IVKAQIWDTAGQERYR--   76 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~~--   76 (217)
                      ++|+++|.+|+|||||+|+|++........+..+.+.....+.+.+.               ...+.+|||||...+.  
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~   82 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence            68999999999999999999997743332232233333334444442               1478999999976543  


Q ss_pred             --hh---hhhhhcCCcEEEEEEECCCh----------hhHHHHHHHHHHH------------------------------
Q 027856           77 --AI---TSAYYRGAVGALLVYDVTRH----------VTFENVERWLKEL------------------------------  111 (217)
Q Consensus        77 --~~---~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~l------------------------------  111 (217)
                        .+   ....++.+|++++|+|+++.          ..++++..+..++                              
T Consensus        83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~  162 (363)
T 1jal_A           83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL  162 (363)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence              22   23357899999999999862          1222222111111                              


Q ss_pred             ----------Hh-------------------h-cCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCC
Q 027856          112 ----------RD-------------------H-TDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALE  159 (217)
Q Consensus       112 ----------~~-------------------~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  159 (217)
                                ..                   + ....+|+++++|+.|..-......+.+.+++...+..++++||+.
T Consensus       163 ~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~  240 (363)
T 1jal_A          163 SVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI  240 (363)
T ss_dssp             HHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred             HHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence                      10                   0 112589999999998642112235667777888889999999763

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.67  E-value=6.5e-17  Score=120.72  Aligned_cols=156  Identities=15%  Similarity=0.065  Sum_probs=96.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeE--------------eEEEEEEE----------------CCeE
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVE--------------FATRSIRC----------------DDKI   61 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~----------------~~~~   61 (217)
                      ...+|+++|.+|+|||||+++|++.............+              .....+..                ....
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            35789999999999999999998763221100000000              00011111                0122


Q ss_pred             EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHH
Q 027856           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDA  141 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  141 (217)
                      ..+.+|||+|.....   ..+....+.+++|+|+.+....  ...+...   .   +.|+++|+||+|+........++.
T Consensus       109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~---~---~~~~iiv~NK~Dl~~~~~~~~~~~  177 (221)
T 2wsm_A          109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV--VEKHPEI---F---RVADLIVINKVALAEAVGADVEKM  177 (221)
T ss_dssp             CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH--HHHCHHH---H---HTCSEEEEECGGGHHHHTCCHHHH
T ss_pred             CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh--hhhhhhh---h---hcCCEEEEecccCCcchhhHHHHH
Confidence            578899999941110   0111356889999998765321  1111111   1   468899999999865333456666


Q ss_pred             HHHHHHc--CCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 027856          142 TAFAERE--NTFFMETSALESMNVENAFTEVLTQIYRVV  178 (217)
Q Consensus       142 ~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  178 (217)
                      .+.+...  +.+++++||++|.|+.++|+++.+.+....
T Consensus       178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~  216 (221)
T 2wsm_A          178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS  216 (221)
T ss_dssp             HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred             HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence            6666554  467999999999999999999998775543

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.65  E-value=3.4e-15  Score=125.13  Aligned_cols=115  Identities=18%  Similarity=0.157  Sum_probs=82.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCc------------------C----CCCCcccceeEeEEEEEEECCeEEEEEEEeC
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNE------------------F----SLESKSTIGVEFATRSIRCDDKIVKAQIWDT   69 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt   69 (217)
                      ..-+|+|+|+.++|||||..+|+...                  +    ..+....+++.-....+.+++  +.++|+||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDT  107 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDT  107 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeC
Confidence            46899999999999999999997311                  0    011111222333334444455  78999999


Q ss_pred             CChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856           70 AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        70 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  132 (217)
                      ||+..|..-....++-+|++++|+|+...-..+....|.... .+   ++|.++++||+|...
T Consensus       108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~-~~---~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCR-MR---ATPVMTFVNKMDREA  166 (548)
T ss_dssp             CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHH-HT---TCCEEEEEECTTSCC
T ss_pred             CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHH-Hh---CCceEEEEecccchh
Confidence            999999998999999999999999999876655544554443 33   899999999999743

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.64  E-value=2.4e-16  Score=125.88  Aligned_cols=104  Identities=14%  Similarity=0.089  Sum_probs=69.5

Q ss_pred             EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCC--HH
Q 027856           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS--TE  139 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~--~~  139 (217)
                      +.+.||||||..   ......+..+|++++|+|.........+..      ..  ...|+++|+||+|+.......  ..
T Consensus       172 ~~~iiiDTpGi~---~~~~~~~~~aD~vl~V~d~~~~~~~~~l~~------~~--~~~p~ivVlNK~Dl~~~~~~~~~~~  240 (355)
T 3p32_A          172 FDVILIETVGVG---QSEVAVANMVDTFVLLTLARTGDQLQGIKK------GV--LELADIVVVNKADGEHHKEARLAAR  240 (355)
T ss_dssp             CCEEEEEECSCS---SHHHHHHTTCSEEEEEEESSTTCTTTTCCT------TS--GGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred             CCEEEEeCCCCC---cHHHHHHHhCCEEEEEECCCCCccHHHHHH------hH--hhcCCEEEEECCCCcChhHHHHHHH
Confidence            588999999932   223344588999999999876544322110      01  246889999999986422111  11


Q ss_pred             HHHHHHHH-------cCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 027856          140 DATAFAER-------ENTFFMETSALESMNVENAFTEVLTQIYR  176 (217)
Q Consensus       140 ~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  176 (217)
                      +.......       ++.+++++||++|.|+++++++|.+.+..
T Consensus       241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            12222111       25779999999999999999999988765

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.64  E-value=5.4e-18  Score=127.05  Aligned_cols=154  Identities=13%  Similarity=0.100  Sum_probs=92.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeE------------EEEEEEC-CeE-----------------
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFA------------TRSIRCD-DKI-----------------   61 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~-----------------   61 (217)
                      ..++|+++|.+|||||||+++|+...+...+..+.+.++.            ...+.++ +..                 
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            4689999999999999999999987655433334333322            1111111 111                 


Q ss_pred             --EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHH
Q 027856           62 --VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTE  139 (217)
Q Consensus        62 --~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~  139 (217)
                        ..+.++|++|.-...   ..+-...+.++.++|.........  .....   .   ..|.++|+||+|+........+
T Consensus       117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~---~---~~~~iiv~NK~Dl~~~~~~~~~  185 (226)
T 2hf9_A          117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGI---M---KTADLIVINKIDLADAVGADIK  185 (226)
T ss_dssp             GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHH---H---TTCSEEEEECGGGHHHHTCCHH
T ss_pred             CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhH---h---hcCCEEEEeccccCchhHHHHH
Confidence              134555555521000   011122344556666432211100  00111   1   4678999999999764445677


Q ss_pred             HHHHHHHHc--CCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 027856          140 DATAFAERE--NTFFMETSALESMNVENAFTEVLTQIYR  176 (217)
Q Consensus       140 ~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  176 (217)
                      +...++...  +++++++||++|.|++++|+++.+.+.+
T Consensus       186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            777776654  5789999999999999999999887653

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.63  E-value=1.3e-15  Score=133.57  Aligned_cols=118  Identities=21%  Similarity=0.199  Sum_probs=87.2

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCC----------------CCc--ccceeEeEEEEEE------------ECC
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSL----------------ESK--STIGVEFATRSIR------------CDD   59 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~----------------~~~--~~~~~~~~~~~~~------------~~~   59 (217)
                      .....+|+|+|+.|+|||||+++|+...-..                ...  .|.........+.            .++
T Consensus        16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~   95 (842)
T 1n0u_A           16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG   95 (842)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence            3457899999999999999999998742100                001  1222222222222            234


Q ss_pred             eEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027856           60 KIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~  131 (217)
                      ..+.++||||||+..|...+..+++.+|++|+|+|++++.+++....|.....    .+.|+++|+||+|+.
T Consensus        96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA  163 (842)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred             CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcc
Confidence            47899999999999999999999999999999999999888777665654443    378999999999986

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.62  E-value=5.9e-16  Score=129.81  Aligned_cols=120  Identities=19%  Similarity=0.247  Sum_probs=82.6

Q ss_pred             CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCC---CCCcccceeEeEEEEEEECCe------------------------
Q 027856            8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFS---LESKSTIGVEFATRSIRCDDK------------------------   60 (217)
Q Consensus         8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~------------------------   60 (217)
                      .+....++|+|+|.+|+|||||+|+|++..+.   ....++.+  .... +.....                        
T Consensus        60 ~~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~--~~~~-i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g  136 (550)
T 2qpt_A           60 ADFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTD--CFVA-VMHGETEGTVPGNALVVDPEKPFRKLNPFG  136 (550)
T ss_dssp             TTTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCC--SEEE-EECCSSSEEECCC-----------------
T ss_pred             ccccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccc--eEEE-EEECCcccccCCceeeecCcccHHHHhhhc
Confidence            34556799999999999999999999998864   22222221  1100 000000                        


Q ss_pred             -------E---------EEEEEEeCCChhh-----------hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHh
Q 027856           61 -------I---------VKAQIWDTAGQER-----------YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRD  113 (217)
Q Consensus        61 -------~---------~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~  113 (217)
                             .         ..+.||||||...           +...+..++..+|++++|+|+++....+....++..+..
T Consensus       137 ~~~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~  216 (550)
T 2qpt_A          137 NTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG  216 (550)
T ss_dssp             -CCCTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT
T ss_pred             ccccccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh
Confidence                   0         2589999999654           445667788899999999999875444444556655543


Q ss_pred             hcCCCCcEEEEEeCCCCCCc
Q 027856          114 HTDSNIVIMLVGNKADLRHL  133 (217)
Q Consensus       114 ~~~~~~p~ivv~nK~D~~~~  133 (217)
                         .+.|+++|+||+|+...
T Consensus       217 ---~~~pvilVlNK~Dl~~~  233 (550)
T 2qpt_A          217 ---HEDKIRVVLNKADMVET  233 (550)
T ss_dssp             ---CGGGEEEEEECGGGSCH
T ss_pred             ---cCCCEEEEEECCCccCH
Confidence               36899999999998753

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.60  E-value=2.9e-15  Score=119.45  Aligned_cols=155  Identities=18%  Similarity=0.103  Sum_probs=94.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECC-------------------eEEEEEEEeCCChhh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDD-------------------KIVKAQIWDTAGQER   74 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~l~Dt~G~~~   74 (217)
                      ++|+++|.+|+|||||+++|++........+..+.........+.+                   ....+.+|||||...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            6799999999999999999998753222112112222222223321                   235799999999754


Q ss_pred             hh-------hhhhhhhcCCcEEEEEEECCCh----------hhHHHHHHHHHH---------------------------
Q 027856           75 YR-------AITSAYYRGAVGALLVYDVTRH----------VTFENVERWLKE---------------------------  110 (217)
Q Consensus        75 ~~-------~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~---------------------------  110 (217)
                      ..       ......++.+|++++|+|+++.          ....++..+..+                           
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~  161 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL  161 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence            32       2223457899999999999851          111111111110                           


Q ss_pred             ------------HHhh--------------------cCCCCcEEEEEeCCCCC--Cc-cCCCHHHHHHHHHHcCCcEEEE
Q 027856          111 ------------LRDH--------------------TDSNIVIMLVGNKADLR--HL-RAVSTEDATAFAERENTFFMET  155 (217)
Q Consensus       111 ------------l~~~--------------------~~~~~p~ivv~nK~D~~--~~-~~~~~~~~~~~~~~~~~~~~~~  155 (217)
                                  +...                    .-..+|+++++||.|..  +. +....+.+..++...+.+++++
T Consensus       162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i  241 (368)
T 2dby_A          162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV  241 (368)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence                        1000                    01247999999999742  21 1233566777888888999999


Q ss_pred             ecCCCCCHHHHHH
Q 027856          156 SALESMNVENAFT  168 (217)
Q Consensus       156 Sa~~~~~i~~~~~  168 (217)
                      ||+...++.++++
T Consensus       242 SAk~E~el~eL~~  254 (368)
T 2dby_A          242 SARLEAELAELSG  254 (368)
T ss_dssp             CHHHHHHHHTSCH
T ss_pred             echhHHHHHHhch
Confidence            9988665554443

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.58  E-value=1.7e-14  Score=114.81  Aligned_cols=103  Identities=9%  Similarity=0.019  Sum_probs=62.9

Q ss_pred             EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHH
Q 027856           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDA  141 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  141 (217)
                      +.+.++||+|...   ........+|++++|+|++.+...+.+..   .+     ...|.++|+||+|+.+.... ....
T Consensus       167 ~~~iliDT~Gi~~---~~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~~~~  234 (349)
T 2www_A          167 YDIILIETVGVGQ---SEFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-RRIQ  234 (349)
T ss_dssp             CSEEEEECCCC-----CHHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHHH
T ss_pred             CCEEEEECCCcch---hhhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-HHHH
Confidence            5789999999531   12345678999999999987643222111   11     14578999999998642110 0011


Q ss_pred             HHHHH----------HcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 027856          142 TAFAE----------RENTFFMETSALESMNVENAFTEVLTQIYR  176 (217)
Q Consensus       142 ~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  176 (217)
                      ..+..          .+..+++.+||++|.|+++++++|.+.+.+
T Consensus       235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~  279 (349)
T 2www_A          235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL  279 (349)
T ss_dssp             HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            12211          124568999999999999999999987654

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.58  E-value=7.3e-14  Score=111.41  Aligned_cols=152  Identities=19%  Similarity=0.124  Sum_probs=99.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhh-------hhhhhhhhc
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY-------RAITSAYYR   84 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~   84 (217)
                      ...+|+++|.||+|||||+|+|++........+..+.+.....+.+.+  ..++++||||....       .......++
T Consensus        71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~  148 (376)
T 4a9a_A           71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVAR  148 (376)
T ss_dssp             SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence            457999999999999999999999876555556777777788888888  57899999994321       122234567


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCC--------ccCCCHHHHHHHHHHcCCcEEE
Q 027856           85 GAVGALLVYDVTRHVTFENVERWLKELRDHT--DSNIVIMLVGNKADLRH--------LRAVSTEDATAFAERENTFFME  154 (217)
Q Consensus        85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~~~  154 (217)
                      .+|++++|+|++++..  ..+....++....  -...|.++++||.|...        ......++.........+.--+
T Consensus       149 ~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kp  226 (376)
T 4a9a_A          149 TCNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAE  226 (376)
T ss_dssp             HCSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEE
T ss_pred             hcCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCC
Confidence            8999999999998743  2233333333221  13567789999999732        1234556666665554433222


Q ss_pred             EecCCCCCHHHHH
Q 027856          155 TSALESMNVENAF  167 (217)
Q Consensus       155 ~Sa~~~~~i~~~~  167 (217)
                      +.-..+...+++.
T Consensus       227 v~~~~nv~eddl~  239 (376)
T 4a9a_A          227 IAFRCDATVDDLI  239 (376)
T ss_dssp             EEECSCCCHHHHH
T ss_pred             eeecccCCHHHHH
Confidence            2223333444443

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.57  E-value=3.8e-14  Score=108.38  Aligned_cols=111  Identities=14%  Similarity=-0.059  Sum_probs=68.0

Q ss_pred             EEEEEEeCCChhhhhhhhh------hhhcCCcEEEEEEECCChhhHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCCCcc
Q 027856           62 VKAQIWDTAGQERYRAITS------AYYRGAVGALLVYDVTRHVTFENVER-WLKELRDHTDSNIVIMLVGNKADLRHLR  134 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~ivv~nK~D~~~~~  134 (217)
                      +.+.||||||.........      ..+.. +++++++|+....+...... +..........+.|+++|+||+|+....
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~  187 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE  187 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence            5789999999766543221      23455 88999998764332222211 1111111111268999999999986532


Q ss_pred             CCCHHHHHHH----------------------------HHHcC--CcEEEEecCCCCCHHHHHHHHHHHHH
Q 027856          135 AVSTEDATAF----------------------------AEREN--TFFMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       135 ~~~~~~~~~~----------------------------~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~~~  175 (217)
                      ..  +++.++                            +...+  .+++++||+++.|+++++++|.+.+.
T Consensus       188 ~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~  256 (262)
T 1yrb_A          188 EK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  256 (262)
T ss_dssp             HH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence            11  111111                            23333  47999999999999999999987664

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.55  E-value=1.3e-14  Score=124.53  Aligned_cols=159  Identities=13%  Similarity=0.116  Sum_probs=98.3

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCccccee------------------------------------------
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGV------------------------------------------   48 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~------------------------------------------   48 (217)
                      ...++|+|+|.+++|||||+|+|++..+.+......+.                                          
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            45689999999999999999999998763322111110                                          


Q ss_pred             -------EeEEEE--EEECCeEEEEEEEeCCChh-------------hhhhhhhhhh-cCCcEEEEEEECCChhhHHHHH
Q 027856           49 -------EFATRS--IRCDDKIVKAQIWDTAGQE-------------RYRAITSAYY-RGAVGALLVYDVTRHVTFENVE  105 (217)
Q Consensus        49 -------~~~~~~--~~~~~~~~~~~l~Dt~G~~-------------~~~~~~~~~~-~~~d~ii~v~d~~~~~s~~~~~  105 (217)
                             ......  +...+. ..+.|+||||..             ........++ ..+|++++|+|++...+..+..
T Consensus       129 ~g~~~~is~~~i~l~I~~P~~-~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l  207 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPHV-LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  207 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETTC-CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred             cCCCCcccccceEEEEecCCC-CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence                   000011  111111 257899999932             2223333444 5789999999998754333322


Q ss_pred             HHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHH--HHcC-CcEEEEecCCCCCHHHHHHHHHHH
Q 027856          106 RWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFA--EREN-TFFMETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus       106 ~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~--~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~  173 (217)
                      .++..+..   .+.|+++|+||+|+...............  ...+ ..++.+||++|.|++++++.+.+.
T Consensus       208 ~ll~~L~~---~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          208 KIAKEVDP---QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHHHHCT---TCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHHHHHh---cCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            34444433   47899999999999764433222111000  0012 347889999999999999888763

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.52  E-value=2.9e-13  Score=116.91  Aligned_cols=119  Identities=16%  Similarity=0.139  Sum_probs=83.8

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCc--------CCC----------CCcccceeEeEEEEEEEC-----CeEEEEE
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNE--------FSL----------ESKSTIGVEFATRSIRCD-----DKIVKAQ   65 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~--------~~~----------~~~~~~~~~~~~~~~~~~-----~~~~~~~   65 (217)
                      +.+..-+|+|+|+.++|||||..+|+...        ...          +....+++.-....+.+.     ...+.++
T Consensus         9 p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iN   88 (709)
T 4fn5_A            9 PINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVN   88 (709)
T ss_dssp             CGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEE
T ss_pred             chHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEE
Confidence            44677899999999999999999987421        100          111122222233334332     2358999


Q ss_pred             EEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027856           66 IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        66 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~  131 (217)
                      |+||||+..|..-....++-+|++++|+|+...-..+....|......    +.|.++++||+|..
T Consensus        89 lIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~----~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           89 VIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY----GVPRIVYVNKMDRQ  150 (709)
T ss_dssp             EECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH----TCCEEEEEECSSST
T ss_pred             EEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc----CCCeEEEEcccccc
Confidence            999999999998888899999999999999987655554455555443    88999999999974

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.52  E-value=6.1e-15  Score=117.07  Aligned_cols=104  Identities=13%  Similarity=0.082  Sum_probs=65.1

Q ss_pred             EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCH--H
Q 027856           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVST--E  139 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~--~  139 (217)
                      +.+.||||||......   .....+|++++|+|++.....+.+..   ..     .+.|.++|+||+|+........  +
T Consensus       149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~  217 (341)
T 2p67_A          149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIARH  217 (341)
T ss_dssp             CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred             CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHHH
Confidence            5799999999543322   24689999999999976543211111   00     1457799999999865211110  1


Q ss_pred             HHHHHHHHc-------CCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 027856          140 DATAFAERE-------NTFFMETSALESMNVENAFTEVLTQIYR  176 (217)
Q Consensus       140 ~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  176 (217)
                      +........       ..+++++||++|.|+++++++|.+.+..
T Consensus       218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~  261 (341)
T 2p67_A          218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTA  261 (341)
T ss_dssp             HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence            222222221       3568999999999999999999987653

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.51  E-value=5e-15  Score=126.34  Aligned_cols=115  Identities=17%  Similarity=0.159  Sum_probs=80.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCc--CCC--------CCcc------cceeEeEEEEEEECCeEEEEEEEeCCChhhhhh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNE--FSL--------ESKS------TIGVEFATRSIRCDDKIVKAQIWDTAGQERYRA   77 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~--~~~--------~~~~------~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~   77 (217)
                      .||+|+|+.++|||||..+|+...  ...        .+..      ..|++.....+.+....+.++|+||||+..|..
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~   82 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA   82 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence            579999999999999999987421  100        0000      012222222223333446899999999999999


Q ss_pred             hhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856           78 ITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        78 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  132 (217)
                      .....++-+|++++|+|+...-..+....|..... .   ++|.++++||+|...
T Consensus        83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~-~---~lp~i~~INKmDr~~  133 (638)
T 3j25_A           83 EVYRSLSVLDGAILLISAKDGVQAQTRILFHALRK-M---GIPTIFFINKIDQNG  133 (638)
T ss_dssp             HHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHH-H---TCSCEECCEECCSSS
T ss_pred             HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHH-c---CCCeEEEEecccccc
Confidence            99999999999999999998655444344444443 3   788999999999743

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.43  E-value=2.6e-13  Score=107.35  Aligned_cols=103  Identities=12%  Similarity=0.068  Sum_probs=62.3

Q ss_pred             EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHH
Q 027856           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDA  141 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  141 (217)
                      +.+.|+||+|...-   .......+|.+++++|+......+.+...   +.     ..+.++++||+|+...........
T Consensus       148 ~~~iliDT~Gi~~~---~~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~~~~s~~~~  216 (337)
T 2qm8_A          148 FDVILVETVGVGQS---ETAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERRASAAA  216 (337)
T ss_dssp             CCEEEEEECSSSSC---HHHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHHHHHHH
T ss_pred             CCEEEEECCCCCcc---hhhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCchhHHHHHH
Confidence            58899999995321   12345789999999998654322111111   11     234577789999743221111112


Q ss_pred             HHHHHH----------cCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027856          142 TAFAER----------ENTFFMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       142 ~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  175 (217)
                      +.+...          +..+++.+||+++.|++++++.|.+.+.
T Consensus       217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            222221          1456899999999999999999988654

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.41  E-value=5.4e-13  Score=104.10  Aligned_cols=97  Identities=12%  Similarity=0.028  Sum_probs=79.3

Q ss_pred             hhhhhhhhhhhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCC-HHHHHHHHHHcC
Q 027856           72 QERYRAITSAYYRGAVGALLVYDVTRHV-TFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS-TEDATAFAEREN  149 (217)
Q Consensus        72 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~  149 (217)
                      ++++..+...++.++|++++|+|++++. ++..+..|+..+..   .++|+++|+||+|+.+...+. .++..+++...+
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g  142 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG  142 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence            5667777888999999999999999986 88888889887765   389999999999997643222 344556666778


Q ss_pred             CcEEEEecCCCCCHHHHHHHHH
Q 027856          150 TFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus       150 ~~~~~~Sa~~~~~i~~~~~~i~  171 (217)
                      .+++++||++|.|++++|+.+.
T Consensus       143 ~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          143 YDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             CEEEECCTTTCTTHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHhhcc
Confidence            8999999999999999998764

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.39  E-value=9.8e-12  Score=99.76  Aligned_cols=86  Identities=15%  Similarity=0.167  Sum_probs=62.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcC-CCCCcccceeEeEEEEEEECCe---------------EEEEEEEeCCChhh-
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEF-SLESKSTIGVEFATRSIRCDDK---------------IVKAQIWDTAGQER-   74 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~-   74 (217)
                      ...+|+++|.+|+|||||+|+|++... .....++.+.+.....+.+.+.               ...+.+||+||... 
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~   98 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   98 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence            467999999999999999999999776 4444455555555666666552               13689999999432 


Q ss_pred             ------hhhhhhhhhcCCcEEEEEEECCC
Q 027856           75 ------YRAITSAYYRGAVGALLVYDVTR   97 (217)
Q Consensus        75 ------~~~~~~~~~~~~d~ii~v~d~~~   97 (217)
                            +.......++.+|++++|+|+.+
T Consensus        99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                  22234456789999999999863

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.35  E-value=6.5e-13  Score=106.39  Aligned_cols=88  Identities=16%  Similarity=0.144  Sum_probs=53.3

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCe---------------EEEEEEEeCCChhhh
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK---------------IVKAQIWDTAGQERY   75 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~   75 (217)
                      ...++|+++|.+|+|||||+|+|++..+.....++.+.+.....+.+.+.               ...+.+|||||....
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~   99 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG   99 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence            34689999999999999999999998764444444555555555555442               235899999997654


Q ss_pred             hh-------hhhhhhcCCcEEEEEEECCCh
Q 027856           76 RA-------ITSAYYRGAVGALLVYDVTRH   98 (217)
Q Consensus        76 ~~-------~~~~~~~~~d~ii~v~d~~~~   98 (217)
                      .+       .+..+++.+|++++|+|+.+.
T Consensus       100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~  129 (396)
T 2ohf_A          100 AHNGQGLGNAFLSHISACDGIFHLTRAFED  129 (396)
T ss_dssp             -------CCHHHHHHHTSSSEEEEEEC---
T ss_pred             cchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence            43       455678999999999999753

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.25  E-value=1.5e-11  Score=89.43  Aligned_cols=103  Identities=9%  Similarity=-0.024  Sum_probs=68.6

Q ss_pred             ChhhhhhhhhhhhcCCcEEEEEEECCChhhHH---HHHHHHHHHHhhc-CCCCcEEEEEeCC-CCCCccCCCHHHHHHHH
Q 027856           71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFE---NVERWLKELRDHT-DSNIVIMLVGNKA-DLRHLRAVSTEDATAFA  145 (217)
Q Consensus        71 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~---~~~~~~~~l~~~~-~~~~p~ivv~nK~-D~~~~~~~~~~~~~~~~  145 (217)
                      |++.++.+|..|+.++|++|||+|.+|.+-.+   ++..+...+.... -.+.|++|++||. |+..  .++..++.+..
T Consensus       111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~e~L  188 (227)
T 3l82_B          111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAHEL  188 (227)
T ss_dssp             ------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHHHHT
T ss_pred             cHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHHHHc
Confidence            68899999999999999999999999874322   2222222232221 2578999999985 6743  55666665443


Q ss_pred             HH----cCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027856          146 ER----ENTFFMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       146 ~~----~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  175 (217)
                      ..    ....+..|||.+|+|+.+.++|+.+.+.
T Consensus       189 ~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~  222 (227)
T 3l82_B          189 HLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  222 (227)
T ss_dssp             TGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred             CCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence            22    2344899999999999999999986553

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.12  E-value=7.1e-11  Score=89.94  Aligned_cols=104  Identities=8%  Similarity=-0.029  Sum_probs=73.8

Q ss_pred             CChhhhhhhhhhhhcCCcEEEEEEECCChhhH---HHHHHHHHHHHhhc-CCCCcEEEEEeC-CCCCCccCCCHHHHHHH
Q 027856           70 AGQERYRAITSAYYRGAVGALLVYDVTRHVTF---ENVERWLKELRDHT-DSNIVIMLVGNK-ADLRHLRAVSTEDATAF  144 (217)
Q Consensus        70 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~---~~~~~~~~~l~~~~-~~~~p~ivv~nK-~D~~~~~~~~~~~~~~~  144 (217)
                      .|++.++.+|..|+.++|++|||+|.+|.+-+   +++..+...+.... -.+.|++|++|| .|+..  .++..++.+.
T Consensus       195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~e~  272 (312)
T 3l2o_B          195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAHE  272 (312)
T ss_dssp             --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHHHH
Confidence            46788999999999999999999999987532   22322223332221 248999999996 57754  5566665544


Q ss_pred             HHH----cCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 027856          145 AER----ENTFFMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       145 ~~~----~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  175 (217)
                      ...    ....+..|||.+|+|+.+-++|+.+.+.
T Consensus       273 L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~  307 (312)
T 3l2o_B          273 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  307 (312)
T ss_dssp             TTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred             cCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence            322    2334899999999999999999997664

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.06  E-value=1.8e-11  Score=98.01  Aligned_cols=141  Identities=14%  Similarity=0.133  Sum_probs=81.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC-----cCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhh-------h-hhh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRN-----EFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYR-------A-ITS   80 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~-~~~   80 (217)
                      .+|+++|.+|+|||||+|+|++.     ..... ....+++.....+.+..   .+.++||||.....       . ...
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~-~~~~gtT~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l~  238 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITT-SYFPGTTLDMIEIPLES---GATLYDTPGIINHHQMAHFVDARDLK  238 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEE-EECTTSSCEEEEEECST---TCEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceee-cCCCCeEEeeEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHHH
Confidence            57999999999999999999986     21111 12222333344444444   26899999942111       1 111


Q ss_pred             hhh--cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecC
Q 027856           81 AYY--RGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSAL  158 (217)
Q Consensus        81 ~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  158 (217)
                      .++  ...+.++++++......+..+.    .+......+.|+++++||.|.....+. ....+.+.+..+..+.+.++.
T Consensus       239 ~~~~~~~i~~~~~~l~~~~~~~~g~l~----~l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~~  313 (369)
T 3ec1_A          239 IITPKREIHPRVYQLNEGQTLFFGGLA----RLDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPSKR  313 (369)
T ss_dssp             HHSCSSCCCCEEEEECTTEEEEETTTE----EEEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSCGG
T ss_pred             HHhcccccCceEEEEcCCceEEECCEE----EEEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCCch
Confidence            122  6789999999984331111110    022223347899999999998764332 222334455566666666665


Q ss_pred             CCCCH
Q 027856          159 ESMNV  163 (217)
Q Consensus       159 ~~~~i  163 (217)
                      ...++
T Consensus       314 ~~~~~  318 (369)
T 3ec1_A          314 YAAEF  318 (369)
T ss_dssp             GTTTC
T ss_pred             hhhhc
Confidence            54443

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.99  E-value=3e-10  Score=93.92  Aligned_cols=152  Identities=16%  Similarity=0.128  Sum_probs=83.9

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHh------hCcCCCCCc----cc-----------ceeEeEEEEEE-------------
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFT------RNEFSLESK----ST-----------IGVEFATRSIR-------------   56 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~------~~~~~~~~~----~~-----------~~~~~~~~~~~-------------   56 (217)
                      .....|+++|.+|+||||++++|.      +........    +.           .+.........             
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            346789999999999999999998      433211110    00           01111110000             


Q ss_pred             ECCeEEEEEEEeCCChhhhh-hhh---hhh--hcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcE-EEEEeCCC
Q 027856           57 CDDKIVKAQIWDTAGQERYR-AIT---SAY--YRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVI-MLVGNKAD  129 (217)
Q Consensus        57 ~~~~~~~~~l~Dt~G~~~~~-~~~---~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~-ivv~nK~D  129 (217)
                      .....+.+.|+||||..... .+.   ...  +..+|.+++|+|+.......   .....+..    ..|+ .+|+||+|
T Consensus       179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~----~~~i~gvVlNK~D  251 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD----KVDVASVIVTKLD  251 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH----HHCCCCEEEECTT
T ss_pred             HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh----hcCceEEEEeCCc
Confidence            00023588999999954211 111   111  23789999999998754311   12222222    2454 78999999


Q ss_pred             CCCccCCCHHHHHHHHHHcCCcE------------------EEEecCCCCC-HHHHHHHHHHH
Q 027856          130 LRHLRAVSTEDATAFAERENTFF------------------METSALESMN-VENAFTEVLTQ  173 (217)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~~-i~~~~~~i~~~  173 (217)
                      .......    +.......+.++                  +.+|+..|.| +.++++++.+.
T Consensus       252 ~~~~~g~----~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          252 GHAKGGG----ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             SCCCCTH----HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             cccchHH----HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            8642211    222233333332                  3368888988 88888888754

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.98  E-value=2.2e-11  Score=97.42  Aligned_cols=135  Identities=13%  Similarity=0.182  Sum_probs=76.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCC-----CCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhh----h----hh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFS-----LESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRA----I----TS   80 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----~----~~   80 (217)
                      .+|+++|.+|+|||||+|+|++....     .......+++.....+.+...   +.++||||......    +    ..
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~  237 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK  237 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence            57999999999999999999986321     111223333444444444442   78999999422110    1    11


Q ss_pred             hh--hcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHH-HHHHHcCCcEEEEec
Q 027856           81 AY--YRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAT-AFAERENTFFMETSA  157 (217)
Q Consensus        81 ~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-~~~~~~~~~~~~~Sa  157 (217)
                      .+  ....+.++++++.........+    ..+......+.|+++++||.|.....+  .+.+. .+.+..+..+.+.++
T Consensus       238 ~~~~~~~i~~~~~~l~~~~~~~~g~l----~~~d~l~~~~~~~~~v~nk~d~~~~~~--~~~~~~~~~~~~g~~l~p~~~  311 (368)
T 3h2y_A          238 LITPTKEIKPMVFQLNEEQTLFFSGL----ARFDYVSGGRRAFTCHFSNRLTIHRTK--LEKADELYKNHAGDLLSPPTP  311 (368)
T ss_dssp             HHSCSSCCCCEEEEECTTEEEEETTT----EEEEEEESSSEEEEEEECTTSCEEEEE--HHHHHHHHHHHBTTTBCSSCH
T ss_pred             HhccccccCceEEEEcCCCEEEEcce----EEEEEecCCCceEEEEecCcccccccc--HHHHHHHHHHHhCCccCCCch
Confidence            11  3577889999887432111111    002222334789999999999876332  33333 344455655555444

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.97  E-value=2.7e-09  Score=85.30  Aligned_cols=96  Identities=19%  Similarity=0.232  Sum_probs=73.5

Q ss_pred             ChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHH----HH
Q 027856           71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAF----AE  146 (217)
Q Consensus        71 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~~  146 (217)
                      ..+.|.+.+..+++..+++++|+|++++.     ..|...+..... +.|+++|+||+|+... ....++..++    +.
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~-~~~~~~~~~~l~~~~~  127 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPK-SVKHDKVKHWMRYSAK  127 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCT-TSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCc-ccCHHHHHHHHHHHHH
Confidence            45788999999999999999999999864     345555655543 7899999999999753 3334444333    55


Q ss_pred             HcCC---cEEEEecCCCCCHHHHHHHHHHH
Q 027856          147 RENT---FFMETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus       147 ~~~~---~~~~~Sa~~~~~i~~~~~~i~~~  173 (217)
                      ..+.   .++.+||++|.|++++++.+.+.
T Consensus       128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~  157 (368)
T 3h2y_A          128 QLGLKPEDVFLISAAKGQGIAELADAIEYY  157 (368)
T ss_dssp             HTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence            5676   69999999999999999988653

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.97  E-value=1.8e-09  Score=87.30  Aligned_cols=115  Identities=22%  Similarity=0.294  Sum_probs=60.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcc--cceeEeEEEEE--EECCeEEEEEEEeCCChhhh-------------
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKS--TIGVEFATRSI--RCDDKIVKAQIWDTAGQERY-------------   75 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~l~Dt~G~~~~-------------   75 (217)
                      .++++|+|++|+|||||++.|++..+......  ..+.......+  ...+....++++|++|....             
T Consensus        42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~  121 (427)
T 2qag_B           42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF  121 (427)
T ss_dssp             EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence            46799999999999999999999754321111  11111112222  11222347899999983211             


Q ss_pred             -hhhhhh----h---------hcC--CcE-EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856           76 -RAITSA----Y---------YRG--AVG-ALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        76 -~~~~~~----~---------~~~--~d~-ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  132 (217)
                       ...+..    +         ...  +|+ ++++.|...+-+..++ .++..+   . .+.|+|+|.||+|...
T Consensus       122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di-eilk~L---~-~~~~vI~Vi~KtD~Lt  190 (427)
T 2qag_B          122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL-VTMKKL---D-SKVNIIPIIAKADAIS  190 (427)
T ss_dssp             HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH-HHHHHT---C-SCSEEEEEESCGGGSC
T ss_pred             HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH-HHHHHH---h-hCCCEEEEEcchhccc
Confidence             111111    1         112  233 5556666544333321 222222   2 4889999999999765

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.86  E-value=8.3e-09  Score=79.04  Aligned_cols=137  Identities=21%  Similarity=0.202  Sum_probs=70.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcc-------cceeEeEEEEEEE--CCeEEEEEEEeCCChhh---------
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKS-------TIGVEFATRSIRC--DDKIVKAQIWDTAGQER---------   74 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~-------~~~~~~~~~~~~~--~~~~~~~~l~Dt~G~~~---------   74 (217)
                      .++++++|++|+|||||++.|++...+.....       ..........+..  .+....++++|++|.-.         
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            57999999999999999999998643321100       0000001111111  11123779999998210         


Q ss_pred             -hhh----hhh--------------hhhcCCcEEEEEEECC-ChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCcc
Q 027856           75 -YRA----ITS--------------AYYRGAVGALLVYDVT-RHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLR  134 (217)
Q Consensus        75 -~~~----~~~--------------~~~~~~d~ii~v~d~~-~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~  134 (217)
                       ...    ...              ..+..+++.++++|.. .+-+..+ ...+..+..    ..++++|++|+|.....
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~----~~~vI~Vi~K~D~lt~~  156 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK----VVNIIPVIAKADTMTLE  156 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT----TSEEEEEETTGGGSCHH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh----cCcEEEEEeccccCCHH
Confidence             000    000              1123468888998854 3322222 233334432    38999999999976532


Q ss_pred             CCC--HHHHHHHHHHcCCcEEE
Q 027856          135 AVS--TEDATAFAERENTFFME  154 (217)
Q Consensus       135 ~~~--~~~~~~~~~~~~~~~~~  154 (217)
                      +..  ...+.......++.+++
T Consensus       157 e~~~~k~~i~~~l~~~~i~i~~  178 (270)
T 3sop_A          157 EKSEFKQRVRKELEVNGIEFYP  178 (270)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSS
T ss_pred             HHHHHHHHHHHHHHHcCccccC
Confidence            211  12223334445666554

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.86  E-value=8.1e-08  Score=77.63  Aligned_cols=159  Identities=14%  Similarity=0.154  Sum_probs=85.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccc-eeEeE-EEEEEECCeEEEEEEEeCCChhh----hhh-hhhhhhcCC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTI-GVEFA-TRSIRCDDKIVKAQIWDTAGQER----YRA-ITSAYYRGA   86 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~----~~~-~~~~~~~~~   86 (217)
                      ..++++|++|+|||||+|.+.|...+....-.. +.+.. ...+.-......+.+||++|...    ... +...-+...
T Consensus        70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~  149 (413)
T 1tq4_A           70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY  149 (413)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC
T ss_pred             eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCcc
Confidence            479999999999999999999854322211111 11000 01111111112578999998421    111 111123344


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC-------CccCCCHHHH----HHHH----HHcC--
Q 027856           87 VGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR-------HLRAVSTEDA----TAFA----EREN--  149 (217)
Q Consensus        87 d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~-------~~~~~~~~~~----~~~~----~~~~--  149 (217)
                      +..++ ++..... -+.+ .+...+..   .+.|+++|.||.|+.       .-+....++.    .++.    ...+  
T Consensus       150 ~~~~~-lS~G~~~-kqrv-~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~  223 (413)
T 1tq4_A          150 DFFII-ISATRFK-KNDI-DIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIA  223 (413)
T ss_dssp             SEEEE-EESSCCC-HHHH-HHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             CCeEE-eCCCCcc-HHHH-HHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            55555 7765311 1111 22233333   278999999999973       1112223332    3332    1222  


Q ss_pred             -CcEEEEec--CCCCCHHHHHHHHHHHHHHHH
Q 027856          150 -TFFMETSA--LESMNVENAFTEVLTQIYRVV  178 (217)
Q Consensus       150 -~~~~~~Sa--~~~~~i~~~~~~i~~~~~~~~  178 (217)
                       ...|.+|+  ..+.|++++.+.+.+.+.+..
T Consensus       224 ~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~  255 (413)
T 1tq4_A          224 EPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK  255 (413)
T ss_dssp             SCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred             CCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence             35788999  556679999998887765443

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.81  E-value=9.7e-09  Score=82.17  Aligned_cols=96  Identities=17%  Similarity=0.171  Sum_probs=71.3

Q ss_pred             ChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHH----HH
Q 027856           71 GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAF----AE  146 (217)
Q Consensus        71 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~~  146 (217)
                      .++.|.+....++..++++++|+|++++.+     .|...+..... +.|+++|+||+|+... ....+...++    +.
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~-~~~~~~~~~~l~~~~~  129 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPR-SVKYPKLLRWMRRMAE  129 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCT-TCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCC-ccCHHHHHHHHHHHHH
Confidence            478899999999999999999999999763     34444444332 7899999999999763 2333444333    45


Q ss_pred             HcCC---cEEEEecCCCCCHHHHHHHHHHH
Q 027856          147 RENT---FFMETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus       147 ~~~~---~~~~~Sa~~~~~i~~~~~~i~~~  173 (217)
                      ..+.   .++.+||++|.|++++++.+.+.
T Consensus       130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~  159 (369)
T 3ec1_A          130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRY  159 (369)
T ss_dssp             TTTCCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEECCCCCCHHHHHHHHHhh
Confidence            5665   68999999999999999988654

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.76  E-value=2.1e-08  Score=77.31  Aligned_cols=102  Identities=13%  Similarity=0.035  Sum_probs=70.3

Q ss_pred             EEeCCChh-hhhhhhhhhhcCCcEEEEEEECCChhhHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHH
Q 027856           66 IWDTAGQE-RYRAITSAYYRGAVGALLVYDVTRHVTFE--NVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAT  142 (217)
Q Consensus        66 l~Dt~G~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~  142 (217)
                      +-..||+. .........+..+|+++.|+|+.++.+..  .+..++        .++|.++|+||+|+.+..  ..+...
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~--~~~~~~   72 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAA--VTQQWK   72 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHH--HHHHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHH--HHHHHH
Confidence            44578865 44456667789999999999999987653  233332        378999999999997621  122223


Q ss_pred             HHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027856          143 AFAERENTFFMETSALESMNVENAFTEVLTQIYRV  177 (217)
Q Consensus       143 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  177 (217)
                      ++.+..+.+++.+||.++.|+.++++.+.+.+.+.
T Consensus        73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~  107 (282)
T 1puj_A           73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQEK  107 (282)
T ss_dssp             HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            44445578899999999999999999888776644

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.70  E-value=1.4e-08  Score=78.27  Aligned_cols=58  Identities=21%  Similarity=0.430  Sum_probs=36.4

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ   72 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   72 (217)
                      ...++|+++|.||+|||||+|+|.+....... ...+++.....+....   .+.+|||||.
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtpG~  175 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTG-DRPGITTSQQWVKVGK---ELELLDTPGI  175 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecC-CCCCeeeeeEEEEeCC---CEEEEECcCc
Confidence            34689999999999999999999987643322 2223333333333333   5789999994

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.67  E-value=8.8e-09  Score=78.56  Aligned_cols=56  Identities=20%  Similarity=0.329  Sum_probs=35.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE   73 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   73 (217)
                      ++++++|.+|+|||||+|+|.+...... .++.+.+.....+..+.   .+.+|||||..
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~  155 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLEN---GVKILDTPGIL  155 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEEC
T ss_pred             hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeCC---CEEEEECCCcc
Confidence            6999999999999999999998775432 23334433333333332   57899999954

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.57  E-value=5.7e-07  Score=73.09  Aligned_cols=136  Identities=15%  Similarity=0.117  Sum_probs=75.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhC------cCCC----CCc-----------ccceeEeEEEEEEEC------------
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRN------EFSL----ESK-----------STIGVEFATRSIRCD------------   58 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~------~~~~----~~~-----------~~~~~~~~~~~~~~~------------   58 (217)
                      .+.-|+++|.+|+||||++..|...      ....    .+.           ...+..........+            
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            4678999999999999999988742      1100    000           001111111000000            


Q ss_pred             -CeEEEEEEEeCCChhhh-----hhhhh-hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027856           59 -DKIVKAQIWDTAGQERY-----RAITS-AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        59 -~~~~~~~l~Dt~G~~~~-----~~~~~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~  131 (217)
                       ...+.+.|+||+|....     ..+.. .....+|.+++|+|+.......   .....+...   -.+..+|+||+|..
T Consensus       179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~---~~a~~f~~~---~~i~gVIlTKlD~~  252 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY---NQALAFKEA---TPIGSIIVTKLDGS  252 (443)
T ss_dssp             HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH---HHHHHHHHS---CTTEEEEEECCSSC
T ss_pred             HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH---HHHHHHHhh---CCCeEEEEECCCCc
Confidence             01268899999993211     11111 1223579999999987654322   222333322   23557899999975


Q ss_pred             CccCCCHHHHHHHHHHcCCcEEEEec
Q 027856          132 HLRAVSTEDATAFAERENTFFMETSA  157 (217)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~Sa  157 (217)
                      .    ..-.+.......+.++.+++.
T Consensus       253 ~----~gG~~ls~~~~~g~PI~fig~  274 (443)
T 3dm5_A          253 A----KGGGALSAVAATGAPIKFIGT  274 (443)
T ss_dssp             S----SHHHHHHHHHTTCCCEEEEEC
T ss_pred             c----cccHHHHHHHHHCCCEEEEEc
Confidence            4    233455566677888777765

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.40  E-value=1.8e-06  Score=70.26  Aligned_cols=131  Identities=15%  Similarity=0.052  Sum_probs=70.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCc------CC-----CCCcc------------------c--ceeEeE-E--EEEEEC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNE------FS-----LESKS------------------T--IGVEFA-T--RSIRCD   58 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~------~~-----~~~~~------------------~--~~~~~~-~--~~~~~~   58 (217)
                      ...|+++|.+|+||||+++.|....      ..     .....                  .  .+.+.. .  ..+. .
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~-~  177 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGME-K  177 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHH-T
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHH-H
Confidence            4579999999999999999887631      10     00000                  0  000000 0  0000 0


Q ss_pred             CeEEEEEEEeCCChhhh----hhhhh--hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCC-c-EEEEEeCCCC
Q 027856           59 DKIVKAQIWDTAGQERY----RAITS--AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNI-V-IMLVGNKADL  130 (217)
Q Consensus        59 ~~~~~~~l~Dt~G~~~~----~~~~~--~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~-p-~ivv~nK~D~  130 (217)
                      ...+.+.|+||||....    .....  ..+..+|.+++|+|+.....   .......+.    ... | ..+|+||+|.
T Consensus       178 ~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~----~~~~~i~gvVlnK~D~  250 (432)
T 2v3c_C          178 FKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK----EAVGEIGSIIVTKLDG  250 (432)
T ss_dssp             TSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH----TTSCSCEEEEEECSSS
T ss_pred             hhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh----hcccCCeEEEEeCCCC
Confidence            12357899999995321    11111  11236899999999876532   112222222    134 5 7899999997


Q ss_pred             CCccCCCHHHHHHHHHHcCCcEEEE
Q 027856          131 RHLRAVSTEDATAFAERENTFFMET  155 (217)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~  155 (217)
                      ...    ...+.......+.++..+
T Consensus       251 ~~~----~g~~l~~~~~~~~pi~~i  271 (432)
T 2v3c_C          251 SAK----GGGALSAVAETKAPIKFI  271 (432)
T ss_dssp             CST----THHHHHHHHHSSCCEEEE
T ss_pred             ccc----hHHHHHHHHHHCCCEEEe
Confidence            531    122334555666665444

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.39  E-value=3.6e-07  Score=76.91  Aligned_cols=63  Identities=14%  Similarity=0.122  Sum_probs=39.9

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCC-CcccceeEeEEEEE--EE-CCeEEEEEEEeCCChh
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLE-SKSTIGVEFATRSI--RC-DDKIVKAQIWDTAGQE   73 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~--~~-~~~~~~~~l~Dt~G~~   73 (217)
                      ...++|+|+|.+|+|||||+|+|++...... ...+.+.+.....+  .. ......+.|+||||..
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~  102 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG  102 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence            4568999999999999999999999874322 11111222222221  11 1222478999999943

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.32  E-value=5.7e-07  Score=73.07  Aligned_cols=140  Identities=15%  Similarity=0.121  Sum_probs=77.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhC------cCCC----CCc-----------ccceeEeEEEEE-------------EE
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRN------EFSL----ESK-----------STIGVEFATRSI-------------RC   57 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~------~~~~----~~~-----------~~~~~~~~~~~~-------------~~   57 (217)
                      ...-|+++|++|+||||++..|...      ....    .+.           ...+........             ..
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a  175 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF  175 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence            3567899999999999999988732      1100    000           000111110000             00


Q ss_pred             CCeEEEEEEEeCCChhh------h-hhhhh-hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 027856           58 DDKIVKAQIWDTAGQER------Y-RAITS-AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKAD  129 (217)
Q Consensus        58 ~~~~~~~~l~Dt~G~~~------~-~~~~~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D  129 (217)
                      ....+.+.++||||...      + ..+.. ......+.+++|+|+.......   .....+...   -.+..+|+||.|
T Consensus       176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~---~~a~~f~~~---~~~~gVIlTKlD  249 (433)
T 3kl4_A          176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY---DLASRFHQA---SPIGSVIITKMD  249 (433)
T ss_dssp             TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH---HHHHHHHHH---CSSEEEEEECGG
T ss_pred             HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH---HHHHHHhcc---cCCcEEEEeccc
Confidence            11135788999999432      1 11111 1122568999999998654322   222333322   235678999999


Q ss_pred             CCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCH
Q 027856          130 LRHLRAVSTEDATAFAERENTFFMETSALESMNV  163 (217)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  163 (217)
                      ...    ..-.+.......+.++.+++.  |+++
T Consensus       250 ~~a----~~G~als~~~~~g~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          250 GTA----KGGGALSAVVATGATIKFIGT--GEKI  277 (433)
T ss_dssp             GCS----CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred             ccc----cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence            743    344455666677888877775  4443

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.24  E-value=3.7e-06  Score=65.17  Aligned_cols=91  Identities=13%  Similarity=0.022  Sum_probs=55.1

Q ss_pred             EEEEEEeCCChhh--hh-hhhh-----hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCC
Q 027856           62 VKAQIWDTAGQER--YR-AITS-----AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV-IMLVGNKADLRH  132 (217)
Q Consensus        62 ~~~~l~Dt~G~~~--~~-~~~~-----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~  132 (217)
                      +.+.++||||...  .. .+..     .....+|.+++|+|+.....   .......+..    ..+ ..+|+||+|...
T Consensus       181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~----~~~i~gvVlnk~D~~~  253 (297)
T 1j8m_F          181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ----ASKIGTIIITKMDGTA  253 (297)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred             CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence            5789999999654  21 1111     12346899999999864321   1122223332    244 678999999743


Q ss_pred             ccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHH
Q 027856          133 LRAVSTEDATAFAERENTFFMETSALESMNVEN  165 (217)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  165 (217)
                          ....+.......+.++..++  .|+++++
T Consensus       254 ----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          254 ----KGGGALSAVAATGATIKFIG--TGEKIDE  280 (297)
T ss_dssp             ----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             ----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence                23445566777888877776  4555543

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.24  E-value=2.4e-06  Score=72.63  Aligned_cols=26  Identities=27%  Similarity=0.471  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFS   39 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~   39 (217)
                      ..|+|+|++|||||||++.+.|-..+
T Consensus        46 p~iaIvG~nGsGKSTLL~~I~Gl~~P   71 (608)
T 3szr_A           46 PAIAVIGDQSSGKSSVLEALSGVALP   71 (608)
T ss_dssp             CCEECCCCTTSCHHHHHHHHHSCC--
T ss_pred             CeEEEECCCCChHHHHHHHHhCCCCC
Confidence            45999999999999999999997543

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.21  E-value=6.3e-07  Score=68.27  Aligned_cols=93  Identities=11%  Similarity=0.026  Sum_probs=61.4

Q ss_pred             CCChhh-hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH
Q 027856           69 TAGQER-YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAER  147 (217)
Q Consensus        69 t~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~  147 (217)
                      .||+.. ........+.++|+++.|+|+.++.+....     .+. ..  ++|.++|+||+|+.+..  ..+...++...
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~-----~l~-ll--~k~~iivlNK~DL~~~~--~~~~~~~~~~~   73 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY-----GVD-FS--RKETIILLNKVDIADEK--TTKKWVEFFKK   73 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT-----TSC-CT--TSEEEEEEECGGGSCHH--HHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh-----HHH-hc--CCCcEEEEECccCCCHH--HHHHHHHHHHH
Confidence            466542 223456678899999999999988764321     111 11  78999999999997631  12223344455


Q ss_pred             cCCcEEEEecCCCCCHHHHHHHHHH
Q 027856          148 ENTFFMETSALESMNVENAFTEVLT  172 (217)
Q Consensus       148 ~~~~~~~~Sa~~~~~i~~~~~~i~~  172 (217)
                      .+.++ .+||.++.|+.++++.+..
T Consensus        74 ~g~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           74 QGKRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred             cCCeE-EEECCCCcCHHHHHHHHHH
Confidence            67778 9999999999998887654

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.16  E-value=8.3e-07  Score=68.96  Aligned_cols=89  Identities=12%  Similarity=0.063  Sum_probs=59.9

Q ss_pred             hhhhhhhcCCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC--CCHHHHHHHHHHcCCcEE
Q 027856           77 AITSAYYRGAVGALLVYDVTRHVT-FENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA--VSTEDATAFAERENTFFM  153 (217)
Q Consensus        77 ~~~~~~~~~~d~ii~v~d~~~~~s-~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~  153 (217)
                      .+.+..+.++|.+++|+|+.+|.. ...+..++.....   .++|.++|+||+|+.+...  ...+...+.....+.+++
T Consensus        78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~  154 (307)
T 1t9h_A           78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVY  154 (307)
T ss_dssp             EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred             hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEE
Confidence            344456789999999999997653 3334444444433   3788999999999976321  012334444555688899


Q ss_pred             EEecCCCCCHHHHHH
Q 027856          154 ETSALESMNVENAFT  168 (217)
Q Consensus       154 ~~Sa~~~~~i~~~~~  168 (217)
                      .+||.++.|++++++
T Consensus       155 ~~sa~~~~g~~~L~~  169 (307)
T 1t9h_A          155 LTSSKDQDSLADIIP  169 (307)
T ss_dssp             ECCHHHHTTCTTTGG
T ss_pred             EEecCCCCCHHHHHh
Confidence            999988877665543

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.03  E-value=5e-07  Score=74.55  Aligned_cols=111  Identities=14%  Similarity=0.114  Sum_probs=63.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhh--hhhhh--------hh
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER--YRAIT--------SA   81 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~~--------~~   81 (217)
                      ..+.|+++|.+|+||||+.++|....... ..++.............+......+||..|.+.  ....+        ..
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~  116 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK  116 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999988653211 111111110000000011112346889988632  22222        45


Q ss_pred             hhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 027856           82 YYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNK  127 (217)
Q Consensus        82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK  127 (217)
                      ++...++.++|+|.++. +.+....|+..+...   +.+++++-..
T Consensus       117 ~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~---~~~vv~l~~~  158 (469)
T 1bif_A          117 FLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN---GYKTFFVESI  158 (469)
T ss_dssp             HHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH---TCEEEEEEEC
T ss_pred             HHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc---CCcEEEEEEE
Confidence            56667888999999887 455556677666554   4455544433

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.96  E-value=2.9e-05  Score=61.48  Aligned_cols=84  Identities=11%  Similarity=0.057  Sum_probs=56.0

Q ss_pred             hhcCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC-CHHHHHHHHHHcCCcEEEEecCC
Q 027856           82 YYRGAVGALLVYDVTRHV-TFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV-STEDATAFAERENTFFMETSALE  159 (217)
Q Consensus        82 ~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~  159 (217)
                      ...++|.+++|.+. .|. +...+..++......   ++|.++|+||+|+.+.... ..+.........|.+++.+|+.+
T Consensus       127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~  202 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT  202 (358)
T ss_dssp             EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred             HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            46789999988665 454 344455555444333   7788999999999763210 01122333445688899999999


Q ss_pred             CCCHHHHHHH
Q 027856          160 SMNVENAFTE  169 (217)
Q Consensus       160 ~~~i~~~~~~  169 (217)
                      +.|++++...
T Consensus       203 ~~gl~~L~~~  212 (358)
T 2rcn_A          203 QDGLKPLEEA  212 (358)
T ss_dssp             TBTHHHHHHH
T ss_pred             CcCHHHHHHh
Confidence            9999887654

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.95  E-value=2.1e-05  Score=61.71  Aligned_cols=141  Identities=13%  Similarity=0.144  Sum_probs=74.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcc---------------------cceeEeEEEEEEEC------------
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKS---------------------TIGVEFATRSIRCD------------   58 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~---------------------~~~~~~~~~~~~~~------------   58 (217)
                      ..--|+++|++|+||||+++.+.+...+.....                     ..+..+........            
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~  207 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA  207 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence            456789999999999999999886421111100                     00100100000000            


Q ss_pred             -CeEEEEEEEeCCChhhhhh-hh---h--hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027856           59 -DKIVKAQIWDTAGQERYRA-IT---S--AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        59 -~~~~~~~l~Dt~G~~~~~~-~~---~--~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~  131 (217)
                       .....+.++|++|...... ..   .  ...-..|-.+++.|+....   ++......+....  + ..++++||.|..
T Consensus       208 ~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~--~-it~iilTKlD~~  281 (328)
T 3e70_C          208 KARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV--K-IDGIILTKLDAD  281 (328)
T ss_dssp             HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS--C-CCEEEEECGGGC
T ss_pred             HhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc--C-CCEEEEeCcCCc
Confidence             0113566899999532111 10   0  0112468889999976543   2223333333321  2 236888999963


Q ss_pred             CccCCCHHHHHHHHHHcCCcEEEEecCCCCCHH
Q 027856          132 HLRAVSTEDATAFAERENTFFMETSALESMNVE  164 (217)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  164 (217)
                      .    ..-.+.......+.++..++  +|++++
T Consensus       282 a----~~G~~l~~~~~~~~pi~~i~--~Ge~v~  308 (328)
T 3e70_C          282 A----RGGAALSISYVIDAPILFVG--VGQGYD  308 (328)
T ss_dssp             S----CCHHHHHHHHHHTCCEEEEE--CSSSTT
T ss_pred             c----chhHHHHHHHHHCCCEEEEe--CCCCcc
Confidence            3    23335566777788877777  555543

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.87  E-value=2.1e-05  Score=64.14  Aligned_cols=26  Identities=27%  Similarity=0.259  Sum_probs=22.8

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ....-|+|+|.+++|||+|+|+|++.
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhhh
Confidence            45667899999999999999999974

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.62  E-value=5.5e-05  Score=54.95  Aligned_cols=85  Identities=9%  Similarity=-0.094  Sum_probs=54.8

Q ss_pred             EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCCccCCCHH
Q 027856           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHT--DSNIVIMLVGNKADLRHLRAVSTE  139 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~p~ivv~nK~D~~~~~~~~~~  139 (217)
                      +.+.++|+|+..  .......+..+|.+++++..+...  ..+..+++.+....  ..+.++.+|+|+.|....   ...
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~---~~~  148 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT---MLN  148 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE---EEH
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch---HHH
Confidence            688999999854  233445666799999999876554  55666666665543  235677999999985431   123


Q ss_pred             HHHHHHHHcCCcEE
Q 027856          140 DATAFAERENTFFM  153 (217)
Q Consensus       140 ~~~~~~~~~~~~~~  153 (217)
                      +..+..+..+.+++
T Consensus       149 ~~~~~l~~~~~~vl  162 (206)
T 4dzz_A          149 VLKESIKDTGVKAF  162 (206)
T ss_dssp             HHHHHHHHHTCCBC
T ss_pred             HHHHHHHHcCCcee
Confidence            34455555554433

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.53  E-value=5.2e-05  Score=54.17  Aligned_cols=24  Identities=29%  Similarity=0.725  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .+++++|++|+|||||++.+.+..
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            378999999999999999888754

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.47  E-value=0.00035  Score=56.86  Aligned_cols=79  Identities=18%  Similarity=0.077  Sum_probs=43.1

Q ss_pred             EEEEEEeCCChhhhh-hhhh-----hhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCcc
Q 027856           62 VKAQIWDTAGQERYR-AITS-----AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV-IMLVGNKADLRHLR  134 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~-~~~~-----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~  134 (217)
                      +.+.|+||||..... .+..     .....++.+++|+|+......   ......+..    ..+ .-+|+||.|.....
T Consensus       184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~----~l~i~gvVlnK~D~~~~~  256 (433)
T 2xxa_A          184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE----ALPLTGVVLTKVDGDARG  256 (433)
T ss_dssp             CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH----HSCCCCEEEECTTSSSCC
T ss_pred             CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc----cCCCeEEEEecCCCCccH
Confidence            578999999953221 1111     123468899999998754322   122222322    223 34789999975422


Q ss_pred             CCCHHHHHHHHHHcCCc
Q 027856          135 AVSTEDATAFAERENTF  151 (217)
Q Consensus       135 ~~~~~~~~~~~~~~~~~  151 (217)
                          ..+.......+.+
T Consensus       257 ----g~~l~i~~~~~~P  269 (433)
T 2xxa_A          257 ----GAALSIRHITGKP  269 (433)
T ss_dssp             ----THHHHHHHHHCCC
T ss_pred             ----HHHHHHHHHHCCC
Confidence                1233444445554

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.43  E-value=7.6e-05  Score=53.28  Aligned_cols=22  Identities=27%  Similarity=0.635  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      -++++|++|||||||++.|.+.
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999874

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.38  E-value=9.7e-05  Score=53.64  Aligned_cols=22  Identities=50%  Similarity=0.738  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .++++|++|+|||||++.|.+.
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999998874

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.37  E-value=3.5e-05  Score=59.81  Aligned_cols=24  Identities=42%  Similarity=0.584  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -.++++|++|+|||||+|.|.+..
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC--
T ss_pred             CEEEEECCCCCCHHHHHHHhcccc
Confidence            378999999999999999999764

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=97.37  E-value=0.0025  Score=46.53  Aligned_cols=85  Identities=9%  Similarity=0.008  Sum_probs=54.8

Q ss_pred             EEEEEEeCCCh-hhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHH
Q 027856           62 VKAQIWDTAGQ-ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTED  140 (217)
Q Consensus        62 ~~~~l~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~  140 (217)
                      +.+.++|+|+. ...  .....+..+|.+++++..+ ..+...+..+++.+....  +.++.+|+|+.|....  ....+
T Consensus        68 yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~--~~~~~  140 (209)
T 3cwq_A           68 YQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS--KDGDE  140 (209)
T ss_dssp             CSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS--CHHHH
T ss_pred             CCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc--hHHHH
Confidence            67899999986 322  3344667899999998864 455666666777776533  4568899999986430  11344


Q ss_pred             HHHHHHHcCCcEE
Q 027856          141 ATAFAERENTFFM  153 (217)
Q Consensus       141 ~~~~~~~~~~~~~  153 (217)
                      ..+..+..+.+++
T Consensus       141 ~~~~l~~~g~~v~  153 (209)
T 3cwq_A          141 ARQLLTTAGLPLF  153 (209)
T ss_dssp             HHHHHHHTTCCBC
T ss_pred             HHHHHHHcCCchh
Confidence            5555555554433

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.31  E-value=0.00016  Score=52.43  Aligned_cols=28  Identities=32%  Similarity=0.482  Sum_probs=22.7

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      +....--|+|+|++|+|||||++.|.+.
T Consensus        15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           15 YFQGRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             -CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence            3444556899999999999999999875

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.28  E-value=0.00014  Score=52.73  Aligned_cols=22  Identities=23%  Similarity=0.492  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      -|+++|++|||||||++.|.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5899999999999999999875

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.27  E-value=0.00049  Score=53.36  Aligned_cols=23  Identities=61%  Similarity=0.933  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -.++++|++|+|||||+|.|. ..
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred             cEEEEECCCCCCHHHHHHHHH-Hh
Confidence            357999999999999999998 53

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.23  E-value=0.00017  Score=52.62  Aligned_cols=23  Identities=39%  Similarity=0.476  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -++++|++|||||||++.+.+..
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            57999999999999999998754

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.22  E-value=0.00018  Score=53.13  Aligned_cols=24  Identities=25%  Similarity=0.436  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      --++|+|++|||||||++.|.+..
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhccC
Confidence            358999999999999999998854

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.21  E-value=0.00018  Score=53.03  Aligned_cols=23  Identities=35%  Similarity=0.619  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .++|+|++|||||||++.+.+..
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            48999999999999999998744

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.21  E-value=0.00022  Score=51.11  Aligned_cols=24  Identities=25%  Similarity=0.318  Sum_probs=21.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .-.|+++|++|||||||++.|.+.
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhc
Confidence            346899999999999999999876

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.17  E-value=0.00027  Score=51.62  Aligned_cols=27  Identities=30%  Similarity=0.245  Sum_probs=23.0

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .....|+|+|++|||||||++.|.+..
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~   46 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAAL   46 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            445789999999999999999887654

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.16  E-value=0.00024  Score=51.92  Aligned_cols=24  Identities=33%  Similarity=0.541  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      --|+++|++|||||||++.|.+..
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHST
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhC
Confidence            358999999999999999998764

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.15  E-value=0.00019  Score=50.78  Aligned_cols=20  Identities=50%  Similarity=0.690  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 027856           15 KVVLIGDSGVGKSNLLSRFT   34 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~   34 (217)
                      -++++|++|||||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            47899999999999999644

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.13  E-value=0.00026  Score=50.83  Aligned_cols=21  Identities=43%  Similarity=0.724  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 027856           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~   36 (217)
                      |+|+|++|||||||+++|+..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999865

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.10  E-value=0.0003  Score=49.16  Aligned_cols=23  Identities=35%  Similarity=0.447  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -++++|+.|+|||||++.+.+..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            58999999999999999998865

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.09  E-value=0.00027  Score=52.75  Aligned_cols=23  Identities=35%  Similarity=0.483  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -++++|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47999999999999999988754

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.07  E-value=0.00032  Score=49.39  Aligned_cols=23  Identities=26%  Similarity=0.524  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ..|+++|++|||||||.+.|.+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            35999999999999999998764

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.06  E-value=0.00032  Score=50.87  Aligned_cols=24  Identities=38%  Similarity=0.594  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      ..|+++|++||||||+++.|.+..
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            468999999999999999998765

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.05  E-value=0.00033  Score=50.93  Aligned_cols=25  Identities=32%  Similarity=0.511  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      ..-|+++|++|||||||++.|....
T Consensus        12 ~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           12 IPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhC
Confidence            3468999999999999999987643

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.04  E-value=0.00032  Score=55.54  Aligned_cols=24  Identities=38%  Similarity=0.520  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~   38 (217)
                      .++++|++|+|||||+|.|.+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            589999999999999999998654

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.04  E-value=0.00035  Score=50.03  Aligned_cols=21  Identities=33%  Similarity=0.566  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 027856           15 KVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~   35 (217)
                      -++++|++|||||||++.|.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999976

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.02  E-value=0.00033  Score=51.90  Aligned_cols=23  Identities=43%  Similarity=0.502  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -++++|+.|||||||++.+.+-.
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999988754

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.02  E-value=0.00055  Score=48.34  Aligned_cols=24  Identities=38%  Similarity=0.461  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ...|+++|++||||||+.+.|.+.
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~~   31 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAHQ   31 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHh
Confidence            356999999999999999988753

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.01  E-value=0.00038  Score=50.42  Aligned_cols=24  Identities=29%  Similarity=0.448  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .-.|+|+|++|||||||++.|.+.
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHh
Confidence            346899999999999999988764

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.01  E-value=0.00041  Score=50.77  Aligned_cols=22  Identities=27%  Similarity=0.539  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      ++|+|.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999864

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.00  E-value=0.00045  Score=50.38  Aligned_cols=25  Identities=24%  Similarity=0.433  Sum_probs=21.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ....|+|+|+.|||||||++.|.+.
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999988774

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.00  E-value=0.0005  Score=48.60  Aligned_cols=22  Identities=32%  Similarity=0.428  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      ..|++.|.+||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999986

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.99  E-value=0.0004  Score=48.72  Aligned_cols=22  Identities=18%  Similarity=0.335  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .|++.|.+||||||+.+.|...
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998754

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.99  E-value=0.00041  Score=51.94  Aligned_cols=23  Identities=35%  Similarity=0.463  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .++++|+.|||||||++.+.+-.
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998764

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.99  E-value=0.00043  Score=48.60  Aligned_cols=20  Identities=25%  Similarity=0.423  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 027856           14 FKVVLIGDSGVGKSNLLSRF   33 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l   33 (217)
                      +-|++.|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999998

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.99  E-value=0.00044  Score=50.65  Aligned_cols=22  Identities=32%  Similarity=0.528  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      ++|+|+|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999865

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.96  E-value=0.00042  Score=52.57  Aligned_cols=23  Identities=39%  Similarity=0.538  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -++++|+.|||||||++.+.+-.
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998764

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.95  E-value=0.00043  Score=51.75  Aligned_cols=23  Identities=39%  Similarity=0.593  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .++++|+.|||||||++.+.+-.
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999998764

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.95  E-value=0.00049  Score=51.56  Aligned_cols=22  Identities=32%  Similarity=0.715  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHh
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFT   34 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~   34 (217)
                      ...|+|+|++|||||||++.|.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999998

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.95  E-value=0.00045  Score=50.79  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .++++|+.|+|||||++.+.+-.
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36899999999999999998764

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.95  E-value=0.00043  Score=52.91  Aligned_cols=23  Identities=35%  Similarity=0.602  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -++++|+.|||||||++.+.+-.
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47999999999999999998754

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.95  E-value=0.00046  Score=52.35  Aligned_cols=22  Identities=23%  Similarity=0.474  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .++++|++|||||||++.+.+.
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHHh
Confidence            5899999999999999998874

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.93  E-value=0.00051  Score=49.77  Aligned_cols=22  Identities=32%  Similarity=0.531  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      +.|+|+|.+||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999999987

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.92  E-value=0.00045  Score=52.52  Aligned_cols=23  Identities=43%  Similarity=0.577  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .++++|+.|||||||++.+.+-.
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999998864

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.92  E-value=0.00053  Score=48.67  Aligned_cols=23  Identities=26%  Similarity=0.351  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .-++++|.+|+|||||+++|++.
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            46899999999999999999875

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.92  E-value=0.00055  Score=50.44  Aligned_cols=23  Identities=26%  Similarity=0.384  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ..|+++|++||||||+.+.|.+.
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~   28 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEA   28 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999988753

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.91  E-value=0.00056  Score=49.38  Aligned_cols=22  Identities=27%  Similarity=0.655  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .|++.|.+||||||+.+.|...
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~   23 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKK   23 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHh
Confidence            6899999999999999988763

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.91  E-value=0.0005  Score=51.10  Aligned_cols=23  Identities=26%  Similarity=0.446  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .++++|+.|+|||||++.+.+-.
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998764

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.91  E-value=0.00048  Score=52.11  Aligned_cols=23  Identities=35%  Similarity=0.495  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .++++|+.|||||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998764

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.91  E-value=0.00049  Score=51.76  Aligned_cols=23  Identities=35%  Similarity=0.452  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .++++|+.|+|||||++.+.+-.
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999988764

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.90  E-value=0.00055  Score=49.28  Aligned_cols=23  Identities=35%  Similarity=0.573  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .++++|++|+|||||++.+.+..
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhhc
Confidence            47999999999999999888753

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.90  E-value=0.00044  Score=50.59  Aligned_cols=22  Identities=27%  Similarity=0.291  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .++++|+.|+|||||++.+.+.
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999886

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.90  E-value=0.00057  Score=51.25  Aligned_cols=23  Identities=35%  Similarity=0.462  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .++++|+.|+|||||++.+.+-.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999998764

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.90  E-value=0.00056  Score=53.01  Aligned_cols=23  Identities=26%  Similarity=0.304  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .++|+|++|+|||||++.|.+-.
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhhhc
Confidence            68999999999999999888643

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.89  E-value=0.00054  Score=49.62  Aligned_cols=24  Identities=29%  Similarity=0.369  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ...|+|+|.+||||||+.+.|...
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999988754

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.89  E-value=0.00052  Score=52.11  Aligned_cols=23  Identities=48%  Similarity=0.603  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .++++|+.|+|||||++.+.+-.
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Confidence            47899999999999999988764

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.88  E-value=0.00047  Score=49.00  Aligned_cols=25  Identities=24%  Similarity=0.341  Sum_probs=21.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .-.++++|++|+|||||++.+.+..
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            3468999999999999999988654

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.88  E-value=0.00064  Score=49.20  Aligned_cols=24  Identities=33%  Similarity=0.630  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .-.|+++|++||||||+.+.|...
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~~   48 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFARK   48 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHH
Confidence            347999999999999999988753

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.88  E-value=0.00053  Score=51.32  Aligned_cols=23  Identities=39%  Similarity=0.508  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .++++|+.|+|||||++.+.+-.
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998764

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.88  E-value=0.00057  Score=51.49  Aligned_cols=22  Identities=32%  Similarity=0.456  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .++++|+.|+|||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999985

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.87  E-value=0.00064  Score=49.64  Aligned_cols=23  Identities=26%  Similarity=0.601  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      +.|+++|+|||||+|...+|...
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~~   23 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAKE   23 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999988753

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.87  E-value=0.00056  Score=51.72  Aligned_cols=23  Identities=30%  Similarity=0.359  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .++++|+.|+|||||++.+.+-.
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47999999999999999998764

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.87  E-value=0.00057  Score=51.46  Aligned_cols=23  Identities=39%  Similarity=0.631  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .++++|+.|+|||||++.+.+-.
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47999999999999999998764

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.86  E-value=0.00073  Score=49.07  Aligned_cols=22  Identities=36%  Similarity=0.581  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      +.|+++|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999976

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.86  E-value=0.00061  Score=49.32  Aligned_cols=25  Identities=28%  Similarity=0.255  Sum_probs=21.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      ..-|+++|++|||||||.+.|.+..
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~~l   49 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQML   49 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4579999999999999999887654

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.86  E-value=0.00064  Score=48.04  Aligned_cols=23  Identities=26%  Similarity=0.384  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .-|++.|.+||||||+.+.|...
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            35899999999999999998864

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.85  E-value=0.00057  Score=51.81  Aligned_cols=23  Identities=30%  Similarity=0.471  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .++++|+.|+|||||++.+.+-.
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            57999999999999999998753

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.85  E-value=0.00063  Score=51.76  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .++++|+.|+|||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999985

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.84  E-value=0.00072  Score=49.69  Aligned_cols=24  Identities=29%  Similarity=0.541  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .+.|+++|.+||||||+.+.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~~   27 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQER   27 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999988653

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.83  E-value=0.00097  Score=48.46  Aligned_cols=26  Identities=19%  Similarity=0.364  Sum_probs=22.5

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .....|+|+|.+|||||||.+.|.+.
T Consensus        19 ~~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           19 SKTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            34567999999999999999998875

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.83  E-value=0.00078  Score=48.12  Aligned_cols=23  Identities=30%  Similarity=0.417  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ..|+|.|.+||||||+.+.|...
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~   24 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999988763

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.83  E-value=0.00061  Score=51.96  Aligned_cols=23  Identities=26%  Similarity=0.385  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47999999999999999998764

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.82  E-value=0.00069  Score=49.57  Aligned_cols=22  Identities=18%  Similarity=0.403  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      ++|++.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998865

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.81  E-value=0.0009  Score=47.77  Aligned_cols=25  Identities=16%  Similarity=0.404  Sum_probs=21.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ....|+++|.+||||||+.+.|...
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3468999999999999999988765

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.81  E-value=0.00065  Score=52.04  Aligned_cols=23  Identities=39%  Similarity=0.574  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .++++|+.|+|||||++.+.+-.
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47999999999999999998764

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.81  E-value=0.00074  Score=52.28  Aligned_cols=24  Identities=38%  Similarity=0.415  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~   38 (217)
                      .++++|++|+|||||+|.+.+...
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             eEEEECCCCCcHHHHHHHhccccc
Confidence            579999999999999999998654

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.81  E-value=0.0004  Score=51.50  Aligned_cols=22  Identities=27%  Similarity=0.514  Sum_probs=15.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHh-hC
Q 027856           15 KVVLIGDSGVGKSNLLSRFT-RN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~-~~   36 (217)
                      -|+++|++|||||||++.|. +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            58999999999999999998 64

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.81  E-value=0.00094  Score=48.30  Aligned_cols=26  Identities=23%  Similarity=0.501  Sum_probs=22.1

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ...+.|++.|.+||||||+.+.|...
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~~   43 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAEK   43 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34578999999999999999988753

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.80  E-value=0.00094  Score=47.53  Aligned_cols=23  Identities=30%  Similarity=0.520  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhh
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      ...|+++|.+||||||+.+.|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998874

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.80  E-value=0.00066  Score=51.21  Aligned_cols=23  Identities=30%  Similarity=0.515  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .++++|+.|+|||||++.+.+-.
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998864

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.79  E-value=0.0012  Score=51.49  Aligned_cols=27  Identities=22%  Similarity=0.187  Sum_probs=23.1

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      ....-|+|+|++|||||||++.+.+..
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gll  114 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQALL  114 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence            456789999999999999999888754

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.78  E-value=0.00035  Score=49.49  Aligned_cols=23  Identities=26%  Similarity=0.462  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .|+|+|++|||||||++.+.+..
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~~   26 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPIL   26 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999988754

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.78  E-value=0.00069  Score=51.50  Aligned_cols=23  Identities=30%  Similarity=0.436  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .++++|+.|+|||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999988764

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.78  E-value=0.00099  Score=49.88  Aligned_cols=24  Identities=17%  Similarity=0.272  Sum_probs=21.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhh
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      ..+.|++.|.+||||||+.+.|..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999999875

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.77  E-value=0.00097  Score=47.68  Aligned_cols=24  Identities=17%  Similarity=0.344  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ...|++.|.+||||||+.+.|...
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~~   28 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALATG   28 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999988753

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.76  E-value=0.0028  Score=43.23  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ..|++.|++|+|||++++.+...
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CcEEEECCCCccHHHHHHHHHHh
Confidence            45899999999999999887654

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.76  E-value=0.00074  Score=49.71  Aligned_cols=23  Identities=22%  Similarity=0.317  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -++++|++|+|||||++.+.+..
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47999999999999999998743

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.76  E-value=0.00091  Score=47.71  Aligned_cols=22  Identities=27%  Similarity=0.250  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      ..|++.|.+||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998865

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.75  E-value=0.0013  Score=47.46  Aligned_cols=25  Identities=20%  Similarity=0.496  Sum_probs=21.5

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhh
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      .....|++.|.+||||||+.+.|..
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999998874

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.73  E-value=0.00098  Score=46.59  Aligned_cols=22  Identities=36%  Similarity=0.457  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      ++|++.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998875

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.72  E-value=0.001  Score=47.36  Aligned_cols=23  Identities=30%  Similarity=0.466  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ..|+++|.+||||||+.+.|...
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~~   28 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAKL   28 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999988653

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.72  E-value=0.0044  Score=44.86  Aligned_cols=22  Identities=23%  Similarity=0.499  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .+++.|++|+|||+|++.+...
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999988764

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.71  E-value=0.00096  Score=50.62  Aligned_cols=23  Identities=35%  Similarity=0.615  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .++++|+.|+|||||++.+.+-.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999998765

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.70  E-value=0.0011  Score=49.84  Aligned_cols=28  Identities=18%  Similarity=0.293  Sum_probs=21.6

Q ss_pred             CCCCeeeEEEEEcCCCCCHHHHHHHHhh
Q 027856            8 DDYDYLFKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus         8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      ......+.|+|.|.+||||||+.+.|..
T Consensus        17 ~~~~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           17 PNGGEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             ----CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            3444567899999999999999998865

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.70  E-value=0.0012  Score=49.49  Aligned_cols=25  Identities=20%  Similarity=0.292  Sum_probs=21.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ...-|+|+|+.|||||||++.|.+.
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~~   48 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIMEL   48 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3467999999999999999988763

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.69  E-value=0.0012  Score=47.16  Aligned_cols=23  Identities=26%  Similarity=0.504  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhh
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      ...|++.|.+||||||+.+.|..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999998864

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.69  E-value=0.00074  Score=46.63  Aligned_cols=24  Identities=29%  Similarity=0.512  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -.++++|++|+|||+|++.+.+..
T Consensus        37 ~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           37 QFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             SEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            358899999999999999988754

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.69  E-value=0.0013  Score=50.56  Aligned_cols=26  Identities=27%  Similarity=0.341  Sum_probs=22.2

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ....-|++.|++||||||+.++|...
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~~   56 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFEE   56 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34578999999999999999999753

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.68  E-value=0.0014  Score=51.20  Aligned_cols=27  Identities=19%  Similarity=0.177  Sum_probs=22.7

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ...++-|+|+|++|||||||++.|.+.
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~l  115 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKAL  115 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            445678999999999999999887654

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.68  E-value=0.0014  Score=50.41  Aligned_cols=26  Identities=19%  Similarity=0.224  Sum_probs=21.9

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ....-|+|+|++|||||||++.|.+.
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~   54 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNH   54 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            45678999999999999999877653

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.68  E-value=0.0015  Score=47.52  Aligned_cols=24  Identities=21%  Similarity=0.052  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ...|++.|.+||||||+.+.|...
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~~   33 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVEY   33 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHH
Confidence            467999999999999999988753

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.68  E-value=0.00081  Score=53.51  Aligned_cols=25  Identities=24%  Similarity=0.349  Sum_probs=22.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .-+++|+|++|+|||||++.|.+..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999988754

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.67  E-value=0.0013  Score=47.81  Aligned_cols=23  Identities=22%  Similarity=0.248  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ..|++.|.+||||||+.+.|...
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~~   27 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKDW   27 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            57999999999999999998763

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.65  E-value=0.0014  Score=47.25  Aligned_cols=24  Identities=21%  Similarity=0.296  Sum_probs=21.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ...|+|+|.+||||||+.+.|...
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC
Confidence            478999999999999999998875

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.65  E-value=0.00063  Score=52.77  Aligned_cols=23  Identities=39%  Similarity=0.573  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTSS
T ss_pred             EEEEECCCCchHHHHHHHHHcCC
Confidence            58999999999999999888753

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.65  E-value=0.00099  Score=52.83  Aligned_cols=22  Identities=32%  Similarity=0.480  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .|+|+|++|||||||++.+++.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999998874

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.64  E-value=0.0013  Score=46.34  Aligned_cols=24  Identities=17%  Similarity=0.342  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ...|+++|.+|||||||+.+|...
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            346899999999999999998864

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.64  E-value=0.024  Score=46.18  Aligned_cols=25  Identities=24%  Similarity=0.189  Sum_probs=20.8

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHh
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFT   34 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~   34 (217)
                      ..+..=|+|+|..++|||+|+|.|+
T Consensus        64 ~~~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           64 DKEVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             TSBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCchhHHHHHHH
Confidence            3456778899999999999999654

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.63  E-value=0.0011  Score=50.70  Aligned_cols=21  Identities=33%  Similarity=0.537  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 027856           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ++++|++|+|||||++.+.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999999874

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.62  E-value=0.0012  Score=48.60  Aligned_cols=22  Identities=18%  Similarity=0.407  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      +.|++.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998865

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.61  E-value=0.001  Score=51.23  Aligned_cols=23  Identities=26%  Similarity=0.446  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .++++|+.|+|||||++.+.+-.
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47999999999999999998754

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.61  E-value=0.0011  Score=46.86  Aligned_cols=22  Identities=36%  Similarity=0.631  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      +|+++|.+||||||+.+.|...
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~   27 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKD   27 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5999999999999999988753

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.61  E-value=0.0011  Score=52.58  Aligned_cols=24  Identities=38%  Similarity=0.537  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~   38 (217)
                      -++++|++|||||||++.+.|-..
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~~   55 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFEQ   55 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCchHHHHHHHHhcCCC
Confidence            368999999999999999998653

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.61  E-value=0.0013  Score=46.60  Aligned_cols=24  Identities=33%  Similarity=0.576  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ...|++.|.+||||||+.+.|...
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~~   34 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELASK   34 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHH
Confidence            456999999999999999988743

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.60  E-value=0.0013  Score=48.65  Aligned_cols=23  Identities=39%  Similarity=0.731  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhh
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      ...|++.|.+||||||+.+.|..
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998874

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.60  E-value=0.0017  Score=47.02  Aligned_cols=25  Identities=20%  Similarity=0.216  Sum_probs=21.6

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhh
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      ....-|+|+|.+|||||||++.|.+
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999998875

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.59  E-value=0.0043  Score=42.38  Aligned_cols=25  Identities=20%  Similarity=0.190  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      ...|++.|++|+|||++.+.+....
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHhC
Confidence            3468999999999999999987654

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.59  E-value=0.0015  Score=47.17  Aligned_cols=25  Identities=16%  Similarity=0.064  Sum_probs=21.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      ...|++.|.+||||||+.+.|....
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3579999999999999999988753

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.59  E-value=0.0012  Score=52.35  Aligned_cols=23  Identities=39%  Similarity=0.442  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -++++|+.|||||||++.+.+-.
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHhcCC
Confidence            36899999999999999988754

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.58  E-value=0.0014  Score=49.31  Aligned_cols=27  Identities=22%  Similarity=0.327  Sum_probs=22.9

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ......|+++|.+||||||+.+.|...
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~~   55 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQKE   55 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            445678999999999999999998754

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.57  E-value=0.0012  Score=51.14  Aligned_cols=84  Identities=15%  Similarity=0.024  Sum_probs=45.8

Q ss_pred             EEEEEeCCChhhh--------h----hhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 027856           63 KAQIWDTAGQERY--------R----AITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL  130 (217)
Q Consensus        63 ~~~l~Dt~G~~~~--------~----~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~  130 (217)
                      .+.++||+|....        .    .+........+.+++++|+......   ...+..+....  +. .++++||.|.
T Consensus       186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~---~~~~~~~~~~~--~~-t~iivTh~d~  259 (304)
T 1rj9_A          186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNG---LEQAKKFHEAV--GL-TGVIVTKLDG  259 (304)
T ss_dssp             SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHH---HHHHHHHHHHH--CC-SEEEEECTTS
T ss_pred             CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHH---HHHHHHHHHHc--CC-cEEEEECCcc
Confidence            4568999994211        1    1112334567888889998765432   22222232221  22 3688899986


Q ss_pred             CCccCCCHHHHHHHHHHcCCcEEEEe
Q 027856          131 RHLRAVSTEDATAFAERENTFFMETS  156 (217)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~S  156 (217)
                      ...    .-.+.......+.++.++.
T Consensus       260 ~a~----gg~~l~i~~~~~~pi~~ig  281 (304)
T 1rj9_A          260 TAK----GGVLIPIVRTLKVPIKFVG  281 (304)
T ss_dssp             SCC----CTTHHHHHHHHCCCEEEEE
T ss_pred             ccc----ccHHHHHHHHHCCCeEEEe
Confidence            432    1224455666777766665

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.57  E-value=0.0022  Score=45.74  Aligned_cols=25  Identities=28%  Similarity=0.328  Sum_probs=21.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ....|+++|.+||||||+.+.|...
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            4577999999999999999988754

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.57  E-value=0.0012  Score=52.17  Aligned_cols=23  Identities=39%  Similarity=0.531  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -++++|+.|||||||++.+.+-.
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            37899999999999999998764

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.55  E-value=0.0015  Score=46.72  Aligned_cols=21  Identities=19%  Similarity=0.344  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 027856           15 KVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~   35 (217)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998876

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.55  E-value=0.0018  Score=50.26  Aligned_cols=26  Identities=19%  Similarity=0.258  Sum_probs=22.2

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ....-|+|+|++|||||||++.|.+.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            34467999999999999999988874

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.55  E-value=0.0014  Score=49.27  Aligned_cols=22  Identities=36%  Similarity=0.662  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCc
Q 027856           16 VVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      ++++|++|+|||||++.+.+..
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~   73 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEA   73 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8999999999999999988643

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.54  E-value=0.0012  Score=51.84  Aligned_cols=23  Identities=22%  Similarity=0.455  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .++++|++|+|||||++.+.+-.
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998764

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.54  E-value=0.0013  Score=52.12  Aligned_cols=23  Identities=35%  Similarity=0.414  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -++++|+.|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHCCC
Confidence            37899999999999999998864

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.54  E-value=0.0012  Score=52.45  Aligned_cols=23  Identities=26%  Similarity=0.601  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .++|+|++|+|||||++.+.+..
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            68999999999999999998754

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.54  E-value=0.0014  Score=52.39  Aligned_cols=23  Identities=48%  Similarity=0.625  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -++++|++|||||||++.+.|-.
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            36899999999999999998864

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.53  E-value=0.0014  Score=52.06  Aligned_cols=23  Identities=39%  Similarity=0.470  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -++++|+.|||||||++.+.|-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            36899999999999999998864

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.53  E-value=0.0012  Score=48.53  Aligned_cols=23  Identities=22%  Similarity=0.359  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ..|+|+|.+||||||+.+.|...
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~~   28 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKTK   28 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999988753

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.52  E-value=0.0014  Score=49.31  Aligned_cols=22  Identities=14%  Similarity=0.350  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      -|+|+|++|||||||.+.|...
T Consensus         3 li~I~G~~GSGKSTla~~La~~   24 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQE   24 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHhc
Confidence            4789999999999999988753

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.52  E-value=0.0015  Score=52.19  Aligned_cols=22  Identities=23%  Similarity=0.474  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .|+|+|++|||||||++.+++.
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999998874

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.51  E-value=0.0014  Score=50.68  Aligned_cols=24  Identities=21%  Similarity=0.452  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .--++++|+.||||||+++.+.+.
T Consensus       100 g~vi~lvG~nGsGKTTll~~Lag~  123 (302)
T 3b9q_A          100 PAVIMIVGVNGGGKTTSLGKLAHR  123 (302)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            457899999999999999988763

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.51  E-value=0.0016  Score=46.66  Aligned_cols=23  Identities=17%  Similarity=0.397  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhh
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      ...|++.|.+||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998864

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.50  E-value=0.0017  Score=45.90  Aligned_cols=24  Identities=33%  Similarity=0.605  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -.+++.|++|+|||+|++.+....
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHHH
Confidence            458999999999999999887653

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.50  E-value=0.0016  Score=46.77  Aligned_cols=24  Identities=21%  Similarity=0.411  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ...|++.|.+||||||+.+.|...
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~   35 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEK   35 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999988753

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.49  E-value=0.0015  Score=52.02  Aligned_cols=23  Identities=39%  Similarity=0.540  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -++++|+.|||||||++.+.+-.
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            46899999999999999998854

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.49  E-value=0.0015  Score=52.09  Aligned_cols=24  Identities=33%  Similarity=0.457  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~   38 (217)
                      -++++|+.|||||||++.+.+-..
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~~   54 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLEE   54 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCcHHHHHHHHHHcCCC
Confidence            368999999999999999988643

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.48  E-value=0.0017  Score=47.67  Aligned_cols=23  Identities=26%  Similarity=0.511  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      +.|+++|.+||||||+.+.|...
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~~   28 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKKE   28 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            67999999999999999988653

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.46  E-value=0.0019  Score=48.63  Aligned_cols=22  Identities=27%  Similarity=0.373  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHh
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFT   34 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~   34 (217)
                      ...|+|+|++|||||||++.|.
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999988

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.45  E-value=0.00061  Score=49.67  Aligned_cols=22  Identities=23%  Similarity=0.502  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      -|+|.|.+||||||+++.|...
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~   23 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGA   23 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4899999999999999988754

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.45  E-value=0.002  Score=47.79  Aligned_cols=25  Identities=28%  Similarity=0.530  Sum_probs=21.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ....|+++|.+||||||+.+.|...
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~   39 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKN   39 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3478999999999999999988753

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.45  E-value=0.0019  Score=46.99  Aligned_cols=24  Identities=25%  Similarity=0.220  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ...|++.|.+||||||+.+.|...
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~~   32 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVEA   32 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            467999999999999999988753

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.44  E-value=0.0028  Score=46.61  Aligned_cols=22  Identities=18%  Similarity=0.510  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      -|+|+|+|||||+|....|...
T Consensus        31 iI~llGpPGsGKgTqa~~L~~~   52 (217)
T 3umf_A           31 VIFVLGGPGSGKGTQCEKLVQK   52 (217)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3677999999999999888753

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.43  E-value=0.012  Score=46.27  Aligned_cols=21  Identities=24%  Similarity=0.430  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 027856           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~   36 (217)
                      +++.|++|+||||+++.+.+.
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~   59 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLES   59 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999988874

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.43  E-value=0.0016  Score=52.71  Aligned_cols=23  Identities=26%  Similarity=0.332  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -|+|+|++|||||||++.+++..
T Consensus       169 ii~I~GpnGSGKTTlL~allg~l  191 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQEL  191 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhhc
Confidence            48999999999999999998754

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.42  E-value=0.0021  Score=45.76  Aligned_cols=22  Identities=27%  Similarity=0.466  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      ..|++.|.+||||||+.+.|..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998865

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.41  E-value=0.002  Score=45.16  Aligned_cols=21  Identities=19%  Similarity=0.529  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 027856           15 KVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~   35 (217)
                      .|++.|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998875

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.38  E-value=0.0024  Score=48.27  Aligned_cols=24  Identities=29%  Similarity=0.559  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ...|++.|.+||||||+.+.|...
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHH
Confidence            357999999999999999988753

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.38  E-value=0.0026  Score=44.98  Aligned_cols=24  Identities=29%  Similarity=0.293  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ...|+++|.+||||||+.+.|...
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~~   28 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEEY   28 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999988764

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=96.37  E-value=0.0037  Score=48.67  Aligned_cols=26  Identities=8%  Similarity=-0.068  Sum_probs=22.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      ..-.+.+.|+||+|||++++.++...
T Consensus        44 ~~~~lli~GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           44 QNKLFYITNADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             CCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            45678999999999999999988654

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.37  E-value=0.0029  Score=45.62  Aligned_cols=27  Identities=19%  Similarity=0.257  Sum_probs=23.0

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ..+.+.|++.|.+||||||+.+.|...
T Consensus         9 ~~~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A            9 HHHHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHh
Confidence            356789999999999999999988754

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.36  E-value=0.002  Score=49.08  Aligned_cols=23  Identities=35%  Similarity=0.618  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .++++|++|+|||||++.+.+..
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~~   97 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGEA   97 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEECCCcChHHHHHHHHHHHc
Confidence            38999999999999999988753

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.36  E-value=0.0016  Score=46.19  Aligned_cols=24  Identities=21%  Similarity=0.246  Sum_probs=16.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ...|++.|.+||||||+.+.|...
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~~   28 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHER   28 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            357999999999999999998643

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.36  E-value=0.0018  Score=53.82  Aligned_cols=23  Identities=17%  Similarity=0.381  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .++|+|++|||||||++.+++.-
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            48999999999999999998754

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.35  E-value=0.0012  Score=52.05  Aligned_cols=23  Identities=26%  Similarity=0.455  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -++++|+.|||||||++.+.|-.
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            47899999999999999998864

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.34  E-value=0.0026  Score=44.50  Aligned_cols=24  Identities=38%  Similarity=0.461  Sum_probs=20.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhh
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      +.-.|++.|.+||||||+.+.|..
T Consensus         6 ~~~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            6 HMQHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             --CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ccceEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999998865

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.34  E-value=0.0021  Score=47.21  Aligned_cols=23  Identities=26%  Similarity=0.469  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -++++|++|+|||||++.+.+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~~~   47 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIAKG   47 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHH
Confidence            47899999999999999988543

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.34  E-value=0.0022  Score=45.52  Aligned_cols=22  Identities=41%  Similarity=0.596  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      ..|+++|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3599999999999999988865

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.34  E-value=0.0027  Score=46.48  Aligned_cols=23  Identities=35%  Similarity=0.564  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhh
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      .+.|+|.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999875

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.34  E-value=0.002  Score=50.55  Aligned_cols=23  Identities=30%  Similarity=0.511  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .++++|++|+|||||++.+.+..
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHh
Confidence            48999999999999999988753

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.33  E-value=0.0025  Score=47.35  Aligned_cols=29  Identities=24%  Similarity=0.367  Sum_probs=22.3

Q ss_pred             CCCCCeeeEEEEEcCCCCCHHHHHHHHhh
Q 027856            7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus         7 ~~~~~~~~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      +.+......|+++|.+||||||+.+.|..
T Consensus        10 ~~~~~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           10 DDDKMKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             ----CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cccccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34455677899999999999999998875

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.33  E-value=0.002  Score=51.71  Aligned_cols=22  Identities=55%  Similarity=0.795  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .++++|++|||||||++.+.+-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            4799999999999999998874

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.32  E-value=0.0026  Score=47.10  Aligned_cols=26  Identities=31%  Similarity=0.597  Sum_probs=22.6

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ....-|++.|..|||||||++.|.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            44567999999999999999998875

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.26  E-value=0.0024  Score=50.64  Aligned_cols=25  Identities=20%  Similarity=0.406  Sum_probs=21.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ..--|+++|+.||||||+++.|.+.
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag~  180 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAHR  180 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHhh
Confidence            3457899999999999999988763

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.26  E-value=0.0019  Score=50.41  Aligned_cols=24  Identities=29%  Similarity=0.427  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .-++|+|..|||||||++.+++..
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhc
Confidence            457899999999999999999764

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=96.25  E-value=0.085  Score=40.83  Aligned_cols=22  Identities=14%  Similarity=0.326  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCc
Q 027856           16 VVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      +++.|++|+|||++++.+....
T Consensus        51 ~L~~G~~G~GKT~la~~la~~l   72 (324)
T 3u61_B           51 ILHSPSPGTGKTTVAKALCHDV   72 (324)
T ss_dssp             EEECSSTTSSHHHHHHHHHHHT
T ss_pred             EEeeCcCCCCHHHHHHHHHHHh
Confidence            4556779999999999987543

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.25  E-value=0.0029  Score=47.01  Aligned_cols=24  Identities=29%  Similarity=0.390  Sum_probs=20.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhh
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      ..+.|++.|++||||||+.+.|..
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999998874

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.23  E-value=0.0027  Score=44.98  Aligned_cols=21  Identities=29%  Similarity=0.415  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 027856           15 KVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~   35 (217)
                      -.+|+|+.|+|||||++++..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            458999999999999998765

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.22  E-value=0.0027  Score=47.72  Aligned_cols=24  Identities=25%  Similarity=0.409  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .-.|++.|++|+|||+|++.+.+.
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            345999999999999999998764

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.20  E-value=0.0022  Score=45.21  Aligned_cols=25  Identities=28%  Similarity=0.514  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .-.+++.|++|+|||+|++.+....
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            3467999999999999999887653

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.20  E-value=0.0026  Score=52.38  Aligned_cols=24  Identities=29%  Similarity=0.733  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .--|+|+|..|||||||++.|.+.
T Consensus       293 GeVI~LVGpNGSGKTTLl~~LAgl  316 (503)
T 2yhs_A          293 PFVILMVGVNGVGKTTTIGKLARQ  316 (503)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCcccHHHHHHHHHHH
Confidence            456899999999999999988763

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.20  E-value=0.0012  Score=52.20  Aligned_cols=23  Identities=22%  Similarity=0.497  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -++++|+.|||||||++.+.|-.
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998864

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=96.19  E-value=0.0032  Score=49.99  Aligned_cols=24  Identities=33%  Similarity=0.602  Sum_probs=21.1

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHh
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFT   34 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~   34 (217)
                      ...+||+++|.+|||||||++.+.
T Consensus        31 ~~~~killlG~~~SGKST~~kq~~   54 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQMR   54 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             cCccEEEEECCCCCcHHHHHHHHH
Confidence            457999999999999999998753

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.19  E-value=0.0032  Score=48.17  Aligned_cols=24  Identities=38%  Similarity=0.511  Sum_probs=21.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhh
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      ..+.|+|.|.+||||||+.+.|..
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999998873

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.19  E-value=0.0026  Score=48.89  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -++|+|++|+|||||+..+.+..
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            47899999999999999988754

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.15  E-value=0.004  Score=45.33  Aligned_cols=24  Identities=29%  Similarity=0.332  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ...|+++|.+|+||||+.+.|...
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~~   48 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEHQ   48 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            467899999999999999987654

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.14  E-value=0.0035  Score=46.22  Aligned_cols=24  Identities=17%  Similarity=0.289  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .-.+++.|++|+|||+|++.+...
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999988754

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.14  E-value=0.0051  Score=47.35  Aligned_cols=27  Identities=22%  Similarity=0.170  Sum_probs=21.9

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      ..+.-+++.|+||+|||+|++.+....
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~~l   60 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFRKM   60 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            345677888999999999999987643

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.14  E-value=0.0036  Score=46.38  Aligned_cols=25  Identities=20%  Similarity=0.438  Sum_probs=20.6

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhh
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      .+.++++++|.|||||||+..+|..
T Consensus         6 ~~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            6 HHHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             ---CEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccccceeeECCCCCCHHHHHHHHHH
Confidence            4578999999999999999998865

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.13  E-value=0.0028  Score=52.02  Aligned_cols=24  Identities=29%  Similarity=0.461  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -.++|+|+.|||||||++.|++-.
T Consensus       139 e~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          139 PRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCcc
Confidence            468999999999999999988753

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.13  E-value=0.0032  Score=49.69  Aligned_cols=24  Identities=33%  Similarity=0.513  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      =+++++|+.|+|||||++.+.+..
T Consensus        72 q~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           72 QRIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            368999999999999999999874

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.13  E-value=0.0032  Score=45.85  Aligned_cols=21  Identities=19%  Similarity=0.153  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 027856           15 KVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~   35 (217)
                      -++++|++|+|||||+..+.+
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            479999999999999999987

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.12  E-value=0.0037  Score=45.06  Aligned_cols=24  Identities=33%  Similarity=0.429  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      ..+++.|++|+|||+|+..+....
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~   78 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANEL   78 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            578999999999999999887644

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.11  E-value=0.0034  Score=46.50  Aligned_cols=22  Identities=14%  Similarity=0.294  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      -++++|++|+|||||+..+.+.
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999999874

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.10  E-value=0.0033  Score=47.25  Aligned_cols=22  Identities=27%  Similarity=0.397  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      -.|+++|.+|+||||+.+.|.+
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998865

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.09  E-value=0.0051  Score=45.55  Aligned_cols=26  Identities=15%  Similarity=0.261  Sum_probs=22.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      ...-|++.|.+||||||+++.|....
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~l   50 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHRL   50 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            45679999999999999999987654

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.02  E-value=0.0037  Score=49.92  Aligned_cols=22  Identities=18%  Similarity=0.202  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      -.|+++|++|+|||||++.+.+
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999999886

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.00  E-value=0.0047  Score=47.48  Aligned_cols=22  Identities=32%  Similarity=0.428  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      ..|++.|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999886

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=95.94  E-value=0.0042  Score=51.17  Aligned_cols=21  Identities=33%  Similarity=0.567  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 027856           15 KVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~   35 (217)
                      -++++|+.|+|||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999887

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=95.93  E-value=0.0045  Score=42.61  Aligned_cols=19  Identities=42%  Similarity=0.718  Sum_probs=17.0

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 027856           16 VVLIGDSGVGKSNLLSRFT   34 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~   34 (217)
                      .+|+|+.|+|||||+.++.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4899999999999999865

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.92  E-value=0.0047  Score=51.75  Aligned_cols=24  Identities=25%  Similarity=0.404  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~   38 (217)
                      .++++|+.|+|||||++.+.|...
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~~   72 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQLI   72 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            589999999999999999998643

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=95.88  E-value=0.0048  Score=50.30  Aligned_cols=23  Identities=43%  Similarity=0.590  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      +++++|++|+|||||++.+.+..
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            68999999999999999998864

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=95.88  E-value=0.0044  Score=52.45  Aligned_cols=23  Identities=48%  Similarity=0.599  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .++++|+.|+|||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhcc
Confidence            68999999999999999988754

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.85  E-value=0.005  Score=45.16  Aligned_cols=22  Identities=23%  Similarity=0.516  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      -+++.|++|+|||+|++.+...
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~~   68 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAKG   68 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988764

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.85  E-value=0.0047  Score=47.36  Aligned_cols=24  Identities=25%  Similarity=0.354  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .-.+++.|++|+|||+|++.+.+.
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            457899999999999999998864

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=95.85  E-value=0.0048  Score=46.97  Aligned_cols=24  Identities=25%  Similarity=0.368  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .-.+++.|++|+|||+|++.+...
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            346999999999999999998764

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.84  E-value=0.004  Score=47.06  Aligned_cols=26  Identities=19%  Similarity=0.336  Sum_probs=21.9

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .....|++.|..||||||+++.|...
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHh
Confidence            34578999999999999999888754

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.84  E-value=0.0042  Score=45.15  Aligned_cols=22  Identities=27%  Similarity=0.323  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .+++.|+||+|||+++.++...
T Consensus        60 ~ili~GPPGtGKTt~a~ala~~   81 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIHF   81 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999998887653

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=95.83  E-value=0.0053  Score=46.03  Aligned_cols=24  Identities=25%  Similarity=0.375  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ...|++.|++|+|||+|++.+...
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999998763

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.81  E-value=0.0047  Score=51.70  Aligned_cols=24  Identities=25%  Similarity=0.488  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~   38 (217)
                      -++++|+.|+|||||++.+.+...
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~~   50 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEII   50 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Confidence            479999999999999999998643

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=95.81  E-value=0.0051  Score=52.07  Aligned_cols=23  Identities=48%  Similarity=0.667  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .++++|+.|+|||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999988754

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.80  E-value=0.006  Score=44.08  Aligned_cols=25  Identities=36%  Similarity=0.522  Sum_probs=21.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      ...|+++|++|+|||+|...|....
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhC
Confidence            3468999999999999999998664

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.79  E-value=0.0069  Score=46.66  Aligned_cols=26  Identities=15%  Similarity=0.350  Sum_probs=21.2

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .....+++.|++|+|||+|++.+...
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~   90 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGL   90 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHH
Confidence            34557999999999999999866653

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.79  E-value=0.021  Score=44.59  Aligned_cols=23  Identities=22%  Similarity=0.455  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ..|++.|++|+|||+|++.+...
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            45899999999999999998654

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.77  E-value=0.0053  Score=46.79  Aligned_cols=21  Identities=29%  Similarity=0.366  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 027856           15 KVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~   35 (217)
                      -++|+|++|+|||||+..+.+
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999998886

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.76  E-value=0.0055  Score=47.30  Aligned_cols=23  Identities=26%  Similarity=0.413  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      -.|++.|++|+|||+|++.+.+.
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCcCHHHHHHHHHHH
Confidence            46899999999999999998864

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.73  E-value=0.0056  Score=47.22  Aligned_cols=134  Identities=15%  Similarity=0.128  Sum_probs=69.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCC-CC----------Cccc-----------ceeEeEEEE----EE--E-CCeEEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFS-LE----------SKST-----------IGVEFATRS----IR--C-DDKIVK   63 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~-~~----------~~~~-----------~~~~~~~~~----~~--~-~~~~~~   63 (217)
                      .-.|+++|++|+||||++..|.+.... ..          +...           .+.......    +.  + .-..+.
T Consensus       105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~d  184 (296)
T 2px0_A          105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYD  184 (296)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCC
Confidence            447899999999999999987642210 00          0000           000000000    00  0 002257


Q ss_pred             EEEEeCCChhhhhh--h--hhhhhc--CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCC
Q 027856           64 AQIWDTAGQERYRA--I--TSAYYR--GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS  137 (217)
Q Consensus        64 ~~l~Dt~G~~~~~~--~--~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~  137 (217)
                      +.|+||+|......  +  ....+.  ..+.+++|+|++..  ...+..+...+..   -+ ..-+|.||.|....    
T Consensus       185 lvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~---l~-~~giVltk~D~~~~----  254 (296)
T 2px0_A          185 HVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS---VP-VNQYIFTKIDETTS----  254 (296)
T ss_dssp             EEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS---SC-CCEEEEECTTTCSC----
T ss_pred             EEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc---CC-CCEEEEeCCCcccc----
Confidence            89999999543221  1  111222  36778899987643  2333333333321   12 23466799997542    


Q ss_pred             HHHHHHHHHHcCCcEEEEe
Q 027856          138 TEDATAFAERENTFFMETS  156 (217)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~S  156 (217)
                      ...+.......+.++..++
T Consensus       255 ~g~~~~~~~~~~~pi~~i~  273 (296)
T 2px0_A          255 LGSVFNILAESKIGVGFMT  273 (296)
T ss_dssp             CHHHHHHHHTCSCCCSEEC
T ss_pred             hhHHHHHHHHHCcCEEEEE
Confidence            2355666777777755544

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.73  E-value=0.0062  Score=43.93  Aligned_cols=21  Identities=33%  Similarity=0.414  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 027856           15 KVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~   35 (217)
                      .|+|.|.+||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998865

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.73  E-value=0.0073  Score=51.30  Aligned_cols=24  Identities=29%  Similarity=0.486  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~   38 (217)
                      .++++|+.|+|||||++.+.+...
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll~  128 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQK  128 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhcCCC
Confidence            589999999999999999998643

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.69  E-value=0.0049  Score=52.31  Aligned_cols=23  Identities=35%  Similarity=0.612  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .++++|++|+|||||++.+.+-.
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            68999999999999999888754

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.66  E-value=0.0062  Score=49.34  Aligned_cols=24  Identities=29%  Similarity=0.354  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ..-|+|+|.+||||||+.++|...
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            456899999999999999998764

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.64  E-value=0.0069  Score=46.94  Aligned_cols=87  Identities=20%  Similarity=0.104  Sum_probs=48.4

Q ss_pred             EEEEEEeCCChhhh--------hhhhhh----hhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 027856           62 VKAQIWDTAGQERY--------RAITSA----YYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKAD  129 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~--------~~~~~~----~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D  129 (217)
                      +.+.++||||....        ..+...    .-...+.+++|+|+....  +.+... ..+....  +. .-+|+||.|
T Consensus       187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~a-~~~~~~~--~i-~gvVlTk~D  260 (306)
T 1vma_A          187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQA-KIFKEAV--NV-TGIILTKLD  260 (306)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHHH-HHHHHHS--CC-CEEEEECGG
T ss_pred             CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHHH-HHHHhcC--CC-CEEEEeCCC
Confidence            46899999994211        111111    113478899999986332  222221 2222221  22 357789999


Q ss_pred             CCCccCCCHHHHHHHHHHcCCcEEEEecC
Q 027856          130 LRHLRAVSTEDATAFAERENTFFMETSAL  158 (217)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  158 (217)
                      ...    ..-.+.......+.++.+++.-
T Consensus       261 ~~~----~gG~~l~~~~~~~~Pi~~i~~G  285 (306)
T 1vma_A          261 GTA----KGGITLAIARELGIPIKFIGVG  285 (306)
T ss_dssp             GCS----CTTHHHHHHHHHCCCEEEEECS
T ss_pred             Ccc----chHHHHHHHHHHCCCEEEEeCC
Confidence            643    2233667777888887776543

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.63  E-value=0.0066  Score=47.26  Aligned_cols=24  Identities=25%  Similarity=0.448  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -.+++.|++|+|||+|++.+.+..
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~~   61 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNEA   61 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHH
Confidence            458999999999999999887643

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.62  E-value=0.0098  Score=45.02  Aligned_cols=26  Identities=27%  Similarity=0.411  Sum_probs=22.3

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .....+++.|++|+|||+|++.+...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            34568999999999999999998864

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.61  E-value=0.0064  Score=50.92  Aligned_cols=24  Identities=17%  Similarity=0.373  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~   38 (217)
                      .++++|+.|+|||||++.+.+-..
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~~  319 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEIT  319 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            479999999999999999998653

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=95.60  E-value=0.0044  Score=52.42  Aligned_cols=23  Identities=39%  Similarity=0.520  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .++++|+.|+|||||++.+.+-.
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            68999999999999999887654

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.60  E-value=0.011  Score=45.55  Aligned_cols=25  Identities=24%  Similarity=0.486  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .-.++++|++|+|||++++.+.+..
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHHH
Confidence            3479999999999999999887653

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.57  E-value=0.0099  Score=50.49  Aligned_cols=24  Identities=21%  Similarity=0.394  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~   38 (217)
                      .++++|+.|+|||||++.+.|...
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll~  142 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQLI  142 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhCCCC
Confidence            589999999999999999998643

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.55  E-value=0.0079  Score=50.37  Aligned_cols=24  Identities=21%  Similarity=0.468  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~   38 (217)
                      .++|+|+.|+|||||++.+.+...
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~~  337 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVEE  337 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            579999999999999999998653

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.53  E-value=0.0073  Score=51.29  Aligned_cols=24  Identities=21%  Similarity=0.468  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~   38 (217)
                      .++|+|+.|+|||||++.+.+...
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~~  407 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVEE  407 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            479999999999999999998654

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.52  E-value=0.0077  Score=48.84  Aligned_cols=24  Identities=29%  Similarity=0.433  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      +--|++.|+||+|||+|++++.+.
T Consensus       206 prGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          206 PRGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            345999999999999999998864

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.51  E-value=0.0074  Score=47.75  Aligned_cols=23  Identities=17%  Similarity=0.358  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      -.++|.|++|+|||||++.+.+.
T Consensus        46 ~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           46 NNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998864

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.50  E-value=0.0081  Score=47.15  Aligned_cols=23  Identities=26%  Similarity=0.596  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .-|+|+|++|||||||...|...
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~   30 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKK   30 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHHH
Confidence            46899999999999999988763

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.49  E-value=0.0056  Score=51.88  Aligned_cols=23  Identities=35%  Similarity=0.587  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .++++|++|+|||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRLI  393 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            68999999999999999888753

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.49  E-value=0.0083  Score=46.75  Aligned_cols=23  Identities=22%  Similarity=0.433  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ..|+|+|++|||||||...|...
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~   28 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADA   28 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999988764

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.45  E-value=0.0084  Score=47.65  Aligned_cols=21  Identities=33%  Similarity=0.534  Sum_probs=18.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHh
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFT   34 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~   34 (217)
                      .+ .+|+|+.|+|||||++.++
T Consensus        24 g~-~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           24 GI-TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EE-EEEECCTTSSHHHHHHHHH
T ss_pred             Ce-EEEECCCCCCHHHHHHHHH
Confidence            45 4699999999999999876

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.45  E-value=0.0084  Score=48.69  Aligned_cols=24  Identities=21%  Similarity=0.285  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      +-.|++.|+||+|||+|++++.+.
T Consensus       215 prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          215 PKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCeeEEECcCCCCHHHHHHHHHHH
Confidence            457999999999999999998864

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.45  E-value=0.0094  Score=46.24  Aligned_cols=22  Identities=23%  Similarity=0.459  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      -|+|+|++|||||+|...|...
T Consensus         5 ~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            5 LVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHh
Confidence            5789999999999999998865

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.45  E-value=0.0087  Score=45.96  Aligned_cols=24  Identities=29%  Similarity=0.624  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ...+++.|++|+|||++++.+...
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~   73 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKL   73 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999988754

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.44  E-value=0.0094  Score=46.70  Aligned_cols=22  Identities=36%  Similarity=0.596  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      -|+|+|++|||||+|...|...
T Consensus        42 lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           42 LLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998865

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.43  E-value=0.011  Score=46.70  Aligned_cols=23  Identities=30%  Similarity=0.573  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhh
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      ..+|+++|++|+||||+.+.|.+
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHHH
Confidence            46899999999999999987665

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.41  E-value=0.012  Score=43.31  Aligned_cols=26  Identities=15%  Similarity=0.132  Sum_probs=21.9

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ....-|++.|.+||||||+++.|...
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~   44 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEY   44 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34567999999999999999987754

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.41  E-value=0.0084  Score=47.37  Aligned_cols=23  Identities=22%  Similarity=0.317  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -+.|+|++|+|||||+..+.+..
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998753

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.41  E-value=0.0086  Score=46.70  Aligned_cols=25  Identities=28%  Similarity=0.429  Sum_probs=21.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .-.|++.|++|+|||+|++.+....
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CceEEEECCCCccHHHHHHHHHHHc
Confidence            3579999999999999999988643

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.40  E-value=0.009  Score=44.26  Aligned_cols=22  Identities=36%  Similarity=0.567  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      -++++|++|+|||||+..++..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~~   46 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLWN   46 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999998877653

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.38  E-value=0.0089  Score=50.78  Aligned_cols=24  Identities=25%  Similarity=0.548  Sum_probs=21.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCcCC
Q 027856           16 VVLIGDSGVGKSNLLSRFTRNEFS   39 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~~~~   39 (217)
                      ++++|+.|+|||||++.+.+-..+
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~~p  404 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGALKP  404 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEECCCCCcHHHHHHHHhcCCCC
Confidence            799999999999999999986543

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.38  E-value=0.01  Score=47.13  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .++|.|++|+|||+|++.+.+..
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999988654

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.37  E-value=0.0093  Score=48.48  Aligned_cols=25  Identities=28%  Similarity=0.305  Sum_probs=21.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .+--|++.|+||+|||+|++++.+.
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            3457999999999999999998864

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.32  E-value=0.0096  Score=46.69  Aligned_cols=24  Identities=21%  Similarity=0.571  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~   38 (217)
                      .+++.|++|+||||+++.+.+...
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~l~   71 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALAREIY   71 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHc
Confidence            389999999999999999887643

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.30  E-value=0.011  Score=46.08  Aligned_cols=24  Identities=29%  Similarity=0.421  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ...|++.|++|+|||+|++.+...
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            457999999999999999998764

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.29  E-value=0.0059  Score=46.97  Aligned_cols=22  Identities=27%  Similarity=0.465  Sum_probs=16.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      +-|+|.|++||||||+.+.|..
T Consensus         6 ~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            6 PIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             CEEEEESCC---CCTHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998875

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.27  E-value=0.013  Score=43.54  Aligned_cols=23  Identities=26%  Similarity=0.482  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .-|++.|..||||||+++.|...
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            56899999999999999988764

>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}

Probab=95.24  E-value=0.033  Score=41.01  Aligned_cols=28  Identities=11%  Similarity=-0.040  Sum_probs=21.8

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      +.+.+-|+..|.++.|||+|++++.+..
T Consensus        26 P~nkilvl~~~~~~~~~~~~~~~lf~~~   53 (233)
T 3uc9_A           26 PQNKILVLSDHPHNFLKTQFLQDLFHCS   53 (233)
T ss_dssp             CCCEEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred             CCCceEEEecCcccccHHHHHHHHhccc
Confidence            3445555555999999999999999874

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.24  E-value=0.011  Score=47.52  Aligned_cols=24  Identities=29%  Similarity=0.401  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      +--|++.|+||+|||.|++++.+.
T Consensus       182 prGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          182 PKGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CCceEEeCCCCCCHHHHHHHHHHh
Confidence            346899999999999999999864

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.23  E-value=0.016  Score=44.89  Aligned_cols=23  Identities=22%  Similarity=0.392  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .-|+|+|++|||||+|...|...
T Consensus        11 ~~i~i~GptgsGKt~la~~La~~   33 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIELRKI   33 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCccCHHHHHHHHHHh
Confidence            45889999999999999998754

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.18  E-value=0.013  Score=45.42  Aligned_cols=25  Identities=36%  Similarity=0.502  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .-.+++.|++|+|||+|+..+....
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~  176 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHEL  176 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            4679999999999999999887643

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.17  E-value=0.0051  Score=46.40  Aligned_cols=22  Identities=32%  Similarity=0.536  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .+++.|++|+|||+|++.+...
T Consensus        46 ~vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            3889999999999999998764

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.12  E-value=0.012  Score=46.06  Aligned_cols=21  Identities=24%  Similarity=0.583  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 027856           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~   36 (217)
                      +++.|++|+|||++++.+.+.
T Consensus        61 ~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999988765

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=95.11  E-value=0.0016  Score=48.19  Aligned_cols=23  Identities=30%  Similarity=0.518  Sum_probs=19.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCcC
Q 027856           16 VVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~~~   38 (217)
                      ++|+|+.|+|||||++.+.+-..
T Consensus        30 ~~i~GpnGsGKSTll~~i~g~~~   52 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVTALI   52 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhcccc
Confidence            36899999999999999887543

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.09  E-value=0.011  Score=46.84  Aligned_cols=24  Identities=25%  Similarity=0.343  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .-.+++.|++|+|||+|++.+...
T Consensus        44 ~~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           44 PSNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHH
Confidence            447899999999999999988764

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=95.09  E-value=0.0075  Score=55.86  Aligned_cols=23  Identities=35%  Similarity=0.576  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      =+|+++|++|||||||++.|.+-
T Consensus      1106 e~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A         1106 QTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp             CEEEEECSTTSSTTSHHHHHTTS
T ss_pred             CEEEEECCCCChHHHHHHHHhcC
Confidence            37899999999999999988764

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.07  E-value=0.014  Score=42.67  Aligned_cols=24  Identities=29%  Similarity=0.295  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ..-|++.|.+||||||+++.|...
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~~   29 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAER   29 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHH
Confidence            456899999999999999988654

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.07  E-value=0.015  Score=41.02  Aligned_cols=24  Identities=25%  Similarity=0.480  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .-|++.|++|+||||+.-.|....
T Consensus        17 ~gvli~G~SGaGKStlal~L~~rG   40 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDRG   40 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            458999999999999999998754

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.06  E-value=0.012  Score=42.84  Aligned_cols=22  Identities=27%  Similarity=0.489  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      +.|++.|.+||||||+.+.|..
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5699999999999999988765

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=95.05  E-value=0.013  Score=48.17  Aligned_cols=23  Identities=35%  Similarity=0.632  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      -+++++|++|+|||+|++.+...
T Consensus       202 ~~~LL~G~pG~GKT~la~~la~~  224 (468)
T 3pxg_A          202 NNPVLIGEPGVGKTAIAEGLAQQ  224 (468)
T ss_dssp             CEEEEESCTTTTTHHHHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999988765

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.05  E-value=0.014  Score=46.16  Aligned_cols=24  Identities=21%  Similarity=0.403  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -.+++.|++|+|||+|++.+....
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~l   94 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQAL   94 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            478999999999999999887643

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=95.03  E-value=0.17  Score=37.21  Aligned_cols=89  Identities=10%  Similarity=0.033  Sum_probs=58.6

Q ss_pred             EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHH
Q 027856           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDA  141 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  141 (217)
                      +.+.++|+|+..  .......+..+|.+++++.. +..+...+..+++.+.........+.+|+|+.+...  ....++ 
T Consensus       119 yD~viiD~p~~~--~~~~~~~l~~ad~viiv~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~--~~~~~~-  192 (245)
T 3ea0_A          119 YDYIIVDFGASI--DHVGVWVLEHLDELCIVTTP-SLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS--RITSDE-  192 (245)
T ss_dssp             CSEEEEEEESSC--CTTHHHHGGGCSEEEEEECS-SHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT--TSCHHH-
T ss_pred             CCEEEEeCCCCC--chHHHHHHHHCCEEEEEecC-cHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC--CCCHHH-
Confidence            688999999853  22344567789999999886 466677777777777665433456889999998643  233333 


Q ss_pred             HHHHHHcCCcEEEEecC
Q 027856          142 TAFAERENTFFMETSAL  158 (217)
Q Consensus       142 ~~~~~~~~~~~~~~Sa~  158 (217)
                        +.+..+.+++..-..
T Consensus       193 --~~~~~~~~v~~~ip~  207 (245)
T 3ea0_A          193 --IEKVIGRPISKRIPQ  207 (245)
T ss_dssp             --HHHHHTSCEEEEECC
T ss_pred             --HHHHhCCCeEEECCC
Confidence              334456666554333

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.03  E-value=0.015  Score=42.13  Aligned_cols=19  Identities=42%  Similarity=0.718  Sum_probs=16.6

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 027856           16 VVLIGDSGVGKSNLLSRFT   34 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~   34 (217)
                      .+|+|+.|+|||||+.++.
T Consensus        26 ~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            4789999999999999754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	217
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	6e-58
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	5e-55
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	5e-54
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	7e-53
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	2e-52
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	2e-51
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	2e-50
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	2e-50
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	4e-49
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	1e-47
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	4e-47
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	1e-45
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	4e-45
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	1e-41
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	3e-41
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	6e-41
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	5e-39
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	7e-39
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	4e-38
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	4e-37
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	4e-37
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	1e-36
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	5e-36
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	8e-36
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	4e-35
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	7e-35
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	7e-35
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	1e-34
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	1e-33
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	1e-33
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	3e-32
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	4e-32
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-31
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	5e-31
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	7e-31
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	1e-30
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	7e-30
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	7e-30
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	2e-28
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	5e-28
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	1e-27
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	2e-27
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	1e-26
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	6e-26
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	7e-25
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	9e-25
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	4e-24
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	7e-23
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	1e-22
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	3e-21
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	6e-21
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	1e-20
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	1e-20
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	4e-18
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	3e-17
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	3e-16
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	5e-11
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	7e-10
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	1e-08
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	2e-06
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	3e-06
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	1e-05
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	2e-05
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	6e-05
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	1e-04
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	1e-04
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	3e-04
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	3e-04
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	5e-04
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	0.002

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  178 bits (453), Expect = 6e-58
 Identities = 140/174 (80%), Positives = 158/174 (90%)

Query: 10  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDT 69
           YDYLFKVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRSI+ D K +KAQIWDT
Sbjct: 1   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 60

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKAD 129
           AGQERYR ITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH DSNIVIMLVGNK+D
Sbjct: 61  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 120

Query: 130 LRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKAL 183
           LRHLRAV T++A AFAE+ N  F+ETSAL+S NVE AF  +LT+IYR+VS+K +
Sbjct: 121 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 174

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  171 bits (434), Expect = 5e-55
 Identities = 81/167 (48%), Positives = 113/167 (67%)

Query: 10  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDT 69
           YDYLFK++LIGDSGVGK+ +L RF+ + F+    STIG++F  R+I  D K +K QIWDT
Sbjct: 3   YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 62

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKAD 129
           AGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W++ + +H  +++  M++GNK D
Sbjct: 63  AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 122

Query: 130 LRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
           +   R VS E     A      FMETSA  ++NVENAF  +   I  
Sbjct: 123 VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKA 169

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  169 bits (429), Expect = 5e-54
 Identities = 87/176 (49%), Positives = 123/176 (69%)

Query: 9   DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWD 68
           +YDYLFK++LIG+SGVGKS LL RF+ + ++ +  STIGV+F  +++  D K VK QIWD
Sbjct: 2   EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 61

Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKA 128
           TAGQER+R ITS+YYRG+ G ++VYDVT   +F  V+ WL+E+  +  S ++ +LVGNK 
Sbjct: 62  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 121

Query: 129 DLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALE 184
           DL+  R V  + A  FA+     F+ETSAL+S NVE+AF  +  QI   +S++ L 
Sbjct: 122 DLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLN 177

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  165 bits (419), Expect = 7e-53
 Identities = 77/170 (45%), Positives = 108/170 (63%), Gaps = 1/170 (0%)

Query: 8   DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRCDDKIVKAQI 66
           D YD  FKV+L+GDSGVGK+ LL RF    F   +  ST+G++F  + +  D   VK Q+
Sbjct: 1   DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQM 60

Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGN 126
           WDTAGQER+R++T AYYR A   LL+YDVT   +F+N++ WL E+ ++   ++ +ML+GN
Sbjct: 61  WDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGN 120

Query: 127 KADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
           K D  H R V  ED    A+     FMETSA   +NV+ AFT +  ++ R
Sbjct: 121 KVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 170

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  164 bits (416), Expect = 2e-52
 Identities = 87/166 (52%), Positives = 113/166 (68%)

Query: 10  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDT 69
           Y Y+FK ++IGD GVGKS LL +FT  +F  +   TIGVEF TR I    + +K QIWDT
Sbjct: 1   YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 60

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKAD 129
           AGQER+RA+T +YYRGA GAL+VYD+TR  T+ ++  WL + R+ T+ N VI+L+GNKAD
Sbjct: 61  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 120

Query: 130 LRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
           L   R V+ E+A  FAE     F+E SA    NVE+AF E   +IY
Sbjct: 121 LEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 166

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  162 bits (410), Expect = 2e-51
 Identities = 74/166 (44%), Positives = 113/166 (68%)

Query: 9   DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWD 68
           DYD+LFK+VLIG++GVGK+ L+ RFT+  F     +TIGV+F  +++  + + VK QIWD
Sbjct: 1   DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWD 60

Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKA 128
           TAGQER+R+IT +YYR A   +L YD+T   +F  +  WL+E+  +  + ++ +LVGNK 
Sbjct: 61  TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKI 120

Query: 129 DLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           DL   R VS + A  F+E ++ +++ETSA ES NVE  F ++  ++
Sbjct: 121 DLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 166

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  159 bits (402), Expect = 2e-50
 Identities = 72/164 (43%), Positives = 106/164 (64%), Gaps = 1/164 (0%)

Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
           + K++LIGDSGVGKS LL RF  ++F+    +TIG++F  +++  + K VK QIWDTAGQ
Sbjct: 2   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 61

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH 132
           ER+R IT+AYYRGA+G +LVYD+T   TF N+++W K + +H +    ++LVGNK+D+  
Sbjct: 62  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 121

Query: 133 LRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
            R V+ +   A A+     F+E+SA    NV   F  +   I  
Sbjct: 122 -RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 164

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  159 bits (402), Expect = 2e-50
 Identities = 69/168 (41%), Positives = 111/168 (66%)

Query: 9   DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWD 68
           ++DY+FK+++IG+S VGK++ L R+  + F+    ST+G++F  ++I  +DK +K QIWD
Sbjct: 1   NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWD 60

Query: 69  TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKA 128
           TAGQERYR IT+AYYRGA+G +L+YD+T   +F  V+ W  +++ ++  N  ++LVGNK 
Sbjct: 61  TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKC 120

Query: 129 DLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
           D+   R VS+E     A+     F E SA +++NV+  F  ++  I  
Sbjct: 121 DMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE 168

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  156 bits (394), Expect = 4e-49
 Identities = 90/169 (53%), Positives = 113/169 (66%)

Query: 12  YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAG 71
           YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R +  D K +K QIWDTAG
Sbjct: 2   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 61

Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR 131
           QE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H+ SN+VIML+GNK+DL 
Sbjct: 62  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 121

Query: 132 HLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSR 180
             R V  E+  AFA      FMETSA  + NVE AF     +IYR + +
Sbjct: 122 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 170

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  152 bits (385), Expect = 1e-47
 Identities = 82/167 (49%), Positives = 108/167 (64%)

Query: 10  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDT 69
           YD+LFK ++IG++G GKS LL +F   +F  +S  TIGVEF ++ I    K VK QIWDT
Sbjct: 2   YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDT 61

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKAD 129
           AGQER+R++T +YYRGA GALLVYD+T   T+  +  WL + R     NIVI+L GNK D
Sbjct: 62  AGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD 121

Query: 130 LRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
           L   R V+  +A+ FA+     F+ETSAL   NVE AF +   +I  
Sbjct: 122 LDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILN 168

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  151 bits (382), Expect = 4e-47
 Identities = 68/179 (37%), Positives = 108/179 (60%), Gaps = 11/179 (6%)

Query: 9   DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDK-------- 60
           DYDYL K++ +GDSGVGK+  L R+T N+F+ +  +T+G++F  + +  + +        
Sbjct: 1   DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 60

Query: 61  --IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSN 118
              V  Q+WDTAGQER+R++T+A++R A+G LL++D+T   +F NV  W+ +L+ +    
Sbjct: 61  AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 120

Query: 119 -IVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
              I+L+GNKADL   R V+   A   A++    + ETSA    NVE A   +L  I +
Sbjct: 121 NPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMK 179

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  147 bits (371), Expect = 1e-45
 Identities = 70/170 (41%), Positives = 102/170 (60%)

Query: 7   DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQI 66
           D+D     K+++IG+SGVGKS+LL RFT + F  E  +TIGV+F  ++I  D    K  I
Sbjct: 1   DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAI 60

Query: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGN 126
           WDTAGQER+R +T +YYRGA G +LVYDVTR  TF  ++ WL EL  +   N ++ ++  
Sbjct: 61  WDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVG 120

Query: 127 KADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
               +  R V   +   FA + +  F+E SA     V+ AF E++ +I +
Sbjct: 121 NKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQ 170

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  145 bits (367), Expect = 4e-45
 Identities = 61/161 (37%), Positives = 104/161 (64%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK+V +G+  VGK++L++RF  + F    ++TIG++F ++++  +D+ ++ Q+WDTAGQE
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           R+R++  +Y R +  A++VYD+T   +F+   +W+ ++R    S+++IMLVGNK DL   
Sbjct: 61  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 120

Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           R VS E+    A+  N  F+ETSA    NV+  F  V   +
Sbjct: 121 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (345), Expect = 1e-41
 Identities = 76/163 (46%), Positives = 108/163 (66%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK+VL+G+S VGKS+L+ RF + +F    +STIG  F T+++  DD  VK +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           RY ++   YYRGA  A++VYD+T   +F   + W+KEL+     NIVI L GNKADL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126

Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
           RAV  ++A ++A+  +  FMETSA  SMNV   F  +  ++ +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  136 bits (342), Expect = 3e-41
 Identities = 65/164 (39%), Positives = 101/164 (61%)

Query: 12  YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAG 71
           Y FKVVL+G+  VGK++L+ R+  N+F+ +  +T+G  F T+ +    K V   IWDTAG
Sbjct: 2   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 61

Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR 131
           QER+ A+   YYR + GA+LVYD+T   +F+ V+ W+KELR    + I + +VGNK DL 
Sbjct: 62  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 121

Query: 132 HLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
             R VS ++A ++AE        TSA ++  +E  F ++  ++ 
Sbjct: 122 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 165

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (340), Expect = 6e-41
 Identities = 52/163 (31%), Positives = 83/163 (50%), Gaps = 2/163 (1%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           +KVV++G  GVGKS L  +F    F  +   TI  +F  + I  D      +I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELR-DHTDSNIVIMLVGNKADLRH 132
           ++ ++   Y +   G +LVY +    +F++++    ++        + ++LVGNK DL  
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122

Query: 133 LRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIY 175
            R VS+ +  A AE     FMETSA     V+  F E++ Q+ 
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  130 bits (327), Expect = 5e-39
 Identities = 59/165 (35%), Positives = 91/165 (55%), Gaps = 2/165 (1%)

Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
           L KV+++G  GVGKS L  +F  +EF  + + T    +  + +  D + V+  I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQ 62

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLR 131
           E Y AI   Y+R   G L V+ +T   +F     + ++ LR   D N+  +LVGNK+DL 
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122

Query: 132 HLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
             R VS E+A   A++ N  ++ETSA    NV+  F +++ +I  
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (326), Expect = 7e-39
 Identities = 67/169 (39%), Positives = 102/169 (60%), Gaps = 6/169 (3%)

Query: 11  DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTA 70
             LFKV+L+GD GVGKS+L++R+  N+F  +   TIGVEF  + +  D   V  QIWDTA
Sbjct: 4   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 63

Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS----NIVIMLVGN 126
           GQER+R++ + +YRG+   LL + V    +F+N+  W KE   + D     +   +++GN
Sbjct: 64  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGN 123

Query: 127 KADLRHLRAVSTEDATAFAERENTF-FMETSALESMNVENAFTEVLTQI 174
           K D+   R VSTE+A A+      + + ETSA ++ NV  AF E + ++
Sbjct: 124 KIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (322), Expect = 4e-38
 Identities = 43/182 (23%), Positives = 71/182 (39%), Gaps = 14/182 (7%)

Query: 6   ADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQ 65
           A      + K V++GD  VGK+ LL  +  + F  E   T+  +    S+    K     
Sbjct: 2   AHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLG 60

Query: 66  IWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVG 125
           ++DTAGQE Y  +    Y      L+ + V    +F+NV+            N+  +L+G
Sbjct: 61  LYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIG 120

Query: 126 NKADLRHLRA------------VSTEDATAFAERENT-FFMETSALESMNVENAFTEVLT 172
            + DLR                +  E     A+      ++E SAL    ++  F E + 
Sbjct: 121 TQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAII 180

Query: 173 QI 174
            I
Sbjct: 181 AI 182

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  125 bits (314), Expect = 4e-37
 Identities = 66/161 (40%), Positives = 103/161 (63%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            KV L+GD+GVGKS+++ RF  + F      TIG  F T++++  +++ K  IWDTAG E
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           R+RA+   YYRG+  A++VYD+T+  TF  ++ W++ELR H   +IV+ + GNK DL  +
Sbjct: 65  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 124

Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           R V   DA  +A+  +  F+ETSA  ++N+   F E+  +I
Sbjct: 125 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 165

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (316), Expect = 4e-37
 Identities = 46/181 (25%), Positives = 72/181 (39%), Gaps = 14/181 (7%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N+F  E   T+  +    ++    +     ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQE 62

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
            Y  +    Y      L+ + V    +FENV+        H       +LVG + DLR  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122

Query: 134 RAV------------STEDATAFAEREN-TFFMETSALESMNVENAFTEVLTQIYRVVSR 180
            +             + E A   A       ++E SAL    ++N F E +         
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182

Query: 181 K 181
           K
Sbjct: 183 K 183

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (311), Expect = 1e-36
 Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 3/165 (1%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           +K+V++G  GVGKS L  +F +  F  +   TI  +   + +  D +    +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLK-ELRDHTDSNIVIMLVGNKADLRH 132
           ++ A+   Y +   G  LVY +T   TF +++   +  LR     ++ ++LVGNK DL  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 133 LRAVSTEDATAFAER-ENTFFMETSALESMNVENAFTEVLTQIYR 176
            R V  E     A +  N  F+E+SA   +NV   F +++ QI R
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (307), Expect = 5e-36
 Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 3/164 (1%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           +K+V++G  GVGKS L  +  +N F  E   TI   +  + +    +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDG-ETCLLDILDTAGQE 62

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRH 132
            Y A+   Y R   G L V+ +    +FE++ ++ ++++   D  ++ ++LVGNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122

Query: 133 LRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
            R V +  A   A      ++ETSA     VE+AF  ++ +I +
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (306), Expect = 8e-36
 Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 2/167 (1%)

Query: 11  DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTA 70
               K+V++G  GVGKS L  +F ++ F          +  T+    D    +  I DTA
Sbjct: 4   SETHKLVVVGGGGVGKSALTIQFIQSYFV-SDYDPTIEDSYTKICSVDGIPARLDILDTA 62

Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVE-RWLKELRDHTDSNIVIMLVGNKAD 129
           GQE + A+   Y R   G LLV+ +    +F  V   + + LR     +  ++LVGNKAD
Sbjct: 63  GQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD 122

Query: 130 LRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
           L   R V   +A+AF    +  + E SA   +NV+ AF +++  + +
Sbjct: 123 LESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRK 169

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  120 bits (302), Expect = 4e-35
 Identities = 63/168 (37%), Positives = 102/168 (60%), Gaps = 4/168 (2%)

Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
           L KV+++GDSGVGK++L++++   +FS + K+TIG +F T+ +  DD++V  QIWDTAGQ
Sbjct: 2   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 61

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS----NIVIMLVGNKA 128
           ER++++  A+YRGA   +LV+DVT   TF+ ++ W  E           N   +++GNK 
Sbjct: 62  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 121

Query: 129 DLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
           DL + +  +         + N  + ETSA E++NVE AF  +     +
Sbjct: 122 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 169

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  119 bits (299), Expect = 7e-35
 Identities = 66/163 (40%), Positives = 98/163 (60%), Gaps = 3/163 (1%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+VL+G++ VGKS+++ RF  N+F+   + TIG  F T+ +  ++  VK +IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH-- 132
           + ++   YYR A  AL+VYDVT+  +F     W+KEL +    +I+I LVGNK D+    
Sbjct: 65  FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEG 124

Query: 133 -LRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
             R V+ E+    AE +   F ETSA    NV + F  +  +I
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (300), Expect = 7e-35
 Identities = 49/174 (28%), Positives = 75/174 (43%), Gaps = 14/174 (8%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K V++GD  VGK+ LL  +T N F  E   T+  +  + ++  D K V   +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
            Y  +    Y     +L+ + +    +FENV         H   N  I+LVG K DLR  
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 124

Query: 134 RAVSTE------------DATAFAERENT-FFMETSALESMNVENAFTEVLTQI 174
           +    +               A A+      ++E SAL    ++  F E +  +
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (298), Expect = 1e-34
 Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 2/164 (1%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           +++V++G  GVGKS L  +F ++ F  +   TI  +  T+    DD+  +  I DTAGQE
Sbjct: 6   YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQE 64

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLRH 132
            + A+   Y R   G LLV+ VT   +FE + ++ ++ LR        ++L+GNKADL H
Sbjct: 65  EFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH 124

Query: 133 LRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
            R V+ E+    A +    +ME SA   MNV+ AF E++  I +
Sbjct: 125 QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRK 168

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  116 bits (291), Expect = 1e-33
 Identities = 63/163 (38%), Positives = 96/163 (58%), Gaps = 5/163 (3%)

Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
           +FK+++IGDS VGK+ L  RF    F   +++TIGV+F  R++  D + +K Q+WDTAGQ
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61

Query: 73  ERY-RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSN-IVIMLVGNKADL 130
           ER+ +++   YYR     + VYD+T   +F ++  W++E + H  +N I  +LVGNK DL
Sbjct: 62  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 121

Query: 131 RHLRAVSTEDATAFAERENTFFMETSALESM---NVENAFTEV 170
           R    V T+ A  FA+  +    ETSA       +VE  F  +
Sbjct: 122 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 164

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  116 bits (290), Expect = 1e-33
 Identities = 56/165 (33%), Positives = 91/165 (55%), Gaps = 3/165 (1%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           +K+V++GD GVGKS L  +F +  F  +   TI   +  +    D++     + DTAGQE
Sbjct: 5   YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQE 63

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLK-ELRDHTDSNIVIMLVGNKADLRH 132
            + A+   Y R   G L+VY VT   +FE+V+R+ +  LR     +  ++LV NK DL H
Sbjct: 64  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 123

Query: 133 LRAVSTEDATAFAERENTFFMETSALES-MNVENAFTEVLTQIYR 176
           LR V+ +     A + N  ++ETSA +  +NV+  F +++  I +
Sbjct: 124 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 168

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  113 bits (282), Expect = 3e-32
 Identities = 60/171 (35%), Positives = 101/171 (59%), Gaps = 7/171 (4%)

Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIV-KAQIWDTAG 71
           + KV+++GDSGVGK++L+ R+  +++S + K+TIG +F T+ +  D   V   Q+WDTAG
Sbjct: 2   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61

Query: 72  QERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSN----IVIMLVGNK 127
           QER++++  A+YRGA   +LVYDVT   +FEN++ W  E   H + N       +++GNK
Sbjct: 62  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 121

Query: 128 ADLRHLRAVSTEDATAFAERE--NTFFMETSALESMNVENAFTEVLTQIYR 176
            D    + + +E +     +   +     TSA  ++NV+ AF E+     +
Sbjct: 122 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 172

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (281), Expect = 4e-32
 Identities = 50/165 (30%), Positives = 76/165 (46%), Gaps = 3/165 (1%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           ++V + G  GVGKS+L+ RF +  F      T+   +          I   QI DT G  
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDK-SICTLQITDTTGSH 61

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRD--HTDSNIVIMLVGNKADLR 131
           ++ A+           +LVY +T   + E ++   +++ +      +I IMLVGNK D  
Sbjct: 62  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121

Query: 132 HLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
             R V + +A A A      FMETSA  + NV+  F E+L    R
Sbjct: 122 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKR 166

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score =  111 bits (278), Expect = 1e-31
 Identities = 31/165 (18%), Positives = 61/165 (36%), Gaps = 9/165 (5%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            +++++G    GK+ +L +    +    +  T+G    T       K VK  +WD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET----VTYKNVKFNVWDVGGQD 67

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKEL-RDHTDSNIVIMLVGNKADL-- 130
           + R +   YY G  G + V D       +   + L  +  D    + +I++  NK DL  
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 127

Query: 131 -RHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
                 +  +         N +   + A     +    T + +  
Sbjct: 128 AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  110 bits (274), Expect = 5e-31
 Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 14/173 (8%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+V++GDS  GK+ LL  F ++ F      T+  E  T S   D + ++  +WDT+G   
Sbjct: 4   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 62

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR--- 131
           Y  +    Y  +   L+ +D++R  T ++V +  K        N  ++LVG K+DLR   
Sbjct: 63  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 122

Query: 132 ---------HLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVLTQI 174
                        VS +     A +     ++E SAL+S N       V T  
Sbjct: 123 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA 175

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  109 bits (272), Expect = 7e-31
 Identities = 60/162 (37%), Positives = 91/162 (56%), Gaps = 1/162 (0%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K+V++G+  VGKS+++ R+ +  F+ + K TIGV+F  R I+ +D+ V+  +WDTAGQE 
Sbjct: 4   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLR 134
           + AIT AYYRGA   +LV+  T   +FE +  W +E       +I   LV NK DL    
Sbjct: 64  FDAITKAYYRGAQACVLVFSTTDRESFEAISSW-REKVVAEVGDIPTALVQNKIDLLDDS 122

Query: 135 AVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
            +  E+A   A+R    F  TS  E +NV   F  +  +  +
Sbjct: 123 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 164

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (271), Expect = 1e-30
 Identities = 47/176 (26%), Positives = 70/176 (39%), Gaps = 14/176 (7%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K+V++GD   GK+ LL   ++++F      T+  E     I  D K V+  +WDTAG E
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLE 61

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
            Y  +    Y      L+ + +    + EN+         H   N+ I+LVGNK DLR+ 
Sbjct: 62  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 121

Query: 134 RAV------------STEDATAFAERENTF-FMETSALESMNVENAFTEVLTQIYR 176
                            E+    A R   F +ME SA     V   F        +
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 177

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score =  106 bits (265), Expect = 7e-30
 Identities = 25/164 (15%), Positives = 56/164 (34%), Gaps = 9/164 (5%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           +++++G    GK+ +L +    E       T            + K +   +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQDK 56

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNK---ADL 130
            R +   Y++   G + V D             L   L +    + V+++  NK    + 
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116

Query: 131 RHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
            +   ++ +         N +   T A     +      +  Q+
Sbjct: 117 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (266), Expect = 7e-30
 Identities = 52/161 (32%), Positives = 87/161 (54%), Gaps = 3/161 (1%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           FK+VL+GD G GK+  + R    EF  +  +T+GVE        +   +K  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
           ++  +   YY  A  A++++DVT  VT++NV  W ++L    + NI I+L GNK D++  
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 122

Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           +      +  F  ++N  + + SA  + N E  F  +  ++
Sbjct: 123 K--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 161

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (256), Expect = 2e-28
 Identities = 55/164 (33%), Positives = 81/164 (49%), Gaps = 2/164 (1%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K+ ++G   VGKS+L  +F   +F      TI   F T+ I  + +    Q+ DTAGQ+
Sbjct: 5   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQD 63

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRH 132
            Y      Y     G +LVY VT   +FE ++    +L D      I IMLVGNK DL  
Sbjct: 64  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 123

Query: 133 LRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
            R +S E+  A AE  N  F+E+SA E+    + F  ++ +  +
Sbjct: 124 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEK 167

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (253), Expect = 5e-28
 Identities = 58/165 (35%), Positives = 80/165 (48%), Gaps = 4/165 (2%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K+ + G +GVGKS L+ RF    F  E   T+   +       DD++V  +I DTAGQE
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQE 61

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRH 132
                   + R   G +LVYD+T   +FE V      L +     N+ ++LVGNKADL H
Sbjct: 62  DTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 120

Query: 133 LRAVSTEDATAFAERENTFFMETSALES-MNVENAFTEVLTQIYR 176
            R VSTE+    A      F E SA     N+   F E+  ++ R
Sbjct: 121 SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR 165

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score =  101 bits (252), Expect = 1e-27
 Identities = 34/165 (20%), Positives = 61/165 (36%), Gaps = 9/165 (5%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            +++++G  G GK+ +L R    E    +K TIG    T       K +K  +WD  GQ 
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVET----LSYKNLKLNVWDLGGQT 72

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADL-- 130
             R     YY      + V D T         + L  +    +  +  +++  NK D   
Sbjct: 73  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 132

Query: 131 -RHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
                 VS E      +  +   + +SA++   +      ++  I
Sbjct: 133 ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 177

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 2e-27
 Identities = 48/169 (28%), Positives = 78/169 (46%), Gaps = 3/169 (1%)

Query: 11  DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEFATRSIRCDDKIVKAQIWDT 69
           +  ++VVLIG+ GVGKS L + F     S++S    +G +   R++  D +     + D 
Sbjct: 1   NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 60

Query: 70  A-GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNK 127
              +     +     +     L+VY +T   +FE       +  R     +I I+LVGNK
Sbjct: 61  WENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 120

Query: 128 ADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
           +DL   R VS  +  A A   +  F+ETSA    NV+  F  ++ Q+  
Sbjct: 121 SDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRL 169

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.3 bits (243), Expect = 1e-26
 Identities = 50/164 (30%), Positives = 75/164 (45%), Gaps = 3/164 (1%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
           +KV+L+G  GVGKS L   F   E     ++        RSI  D +     ++D   Q+
Sbjct: 2   YKVLLLGAPGVGKSALARIFGGVEDG--PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQD 59

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIML-VGNKADLRH 132
             R +           ++VY VT   +FE       +LR    ++ V ++ VGNK+DL  
Sbjct: 60  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 119

Query: 133 LRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
            R VS ++  A A   +  F+ETSA    NV+  F  V+ QI  
Sbjct: 120 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRL 163

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.0 bits (240), Expect = 6e-26
 Identities = 37/176 (21%), Positives = 70/176 (39%), Gaps = 13/176 (7%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            ++ ++GD+  GKS+L+ RF    +  +       E   + +  D +     I + AG  
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSY--QVLEKTESEQYKKEMLVDGQTHLVLIREEAGAP 63

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERW---LKELRDHTDSNIVIMLVGNKAD- 129
             +     +   A   + V+ +    +F+ V R    L  LR      + + LVG +   
Sbjct: 64  DAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 118

Query: 130 -LRHLRAVSTEDATAFA-ERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKAL 183
                R V    A A   + +   + ET A   +NV+  F EV  ++  +  ++ L
Sbjct: 119 SASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQQL 174

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 94.0 bits (232), Expect = 7e-25
 Identities = 29/165 (17%), Positives = 60/165 (36%), Gaps = 9/165 (5%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            +++++G    GK+ +L +F   +       TI           + +  K  IWD  GQ+
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDV-----DTISPTLGFNIKTLEHRGFKLNIWDVGGQK 57

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLRH 132
             R+    Y+    G + V D       ++ +R L+  L +   +   +++  NK DL  
Sbjct: 58  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 117

Query: 133 LRAVSTEDATA---FAERENTFFMETSALESMNVENAFTEVLTQI 174
             + +              +      SA+   ++      +L  I
Sbjct: 118 ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 162

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 93.9 bits (232), Expect = 9e-25
 Identities = 29/165 (17%), Positives = 59/165 (35%), Gaps = 9/165 (5%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            KV+++G    GK+ +L +F+ NE              +          +  +WD  GQE
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEV-----VHTSPTIGSNVEEIVINNTRFLMWDIGGQE 70

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV-IMLVGNKADLRH 132
             R+  + YY      ++V D T           L ++  H D     +++  NK D++ 
Sbjct: 71  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 130

Query: 133 ---LRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
              +  +S        +          AL    +      +++++
Sbjct: 131 CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 92.3 bits (228), Expect = 4e-24
 Identities = 34/168 (20%), Positives = 60/168 (35%), Gaps = 9/168 (5%)

Query: 11  DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTA 70
           D   +++L+G    GK+ LL +    + S  +  T G    +       +  K  +WD  
Sbjct: 14  DQEVRILLLGLDNAGKTTLLKQLASEDISHITP-TQGFNIKS----VQSQGFKLNVWDIG 68

Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKAD 129
           GQ + R    +Y+      + V D      FE   + L EL +    S + +++  NK D
Sbjct: 69  GQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQD 128

Query: 130 L---RHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           L        ++                  SAL    V++    V   +
Sbjct: 129 LLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 88.6 bits (218), Expect = 7e-23
 Identities = 31/165 (18%), Positives = 63/165 (38%), Gaps = 8/165 (4%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            ++ L+G    GK+  ++     +F+ +   T+G        +     V  ++WD  GQ 
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM----RKITKGNVTIKLWDIGGQP 58

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDH-TDSNIVIMLVGNKADL-- 130
           R+R++   Y RG    + + D       E  +  L  L D      I ++++GNK DL  
Sbjct: 59  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 118

Query: 131 -RHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
               + +  +   +  +         S  E  N++     ++   
Sbjct: 119 ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 163

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 89.2 bits (220), Expect = 1e-22
 Identities = 28/200 (14%), Positives = 58/200 (29%), Gaps = 43/200 (21%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K++L+G    GKS  + +      S     T G+      ++        ++ D  GQ 
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEYPFDLQSVIF----RMVDVGGQR 56

Query: 74  RYRAITSAYYRGAVGALLVYDVT-----------RHVTFENVERWLKELRDHTDSNIVIM 122
             R      +      + +  ++            +   E+   +   +      N  ++
Sbjct: 57  SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI 116

Query: 123 LVGNKADLRHLRAVSTEDATAFAERENT--------------------------FFMETS 156
           L  NK DL   + + +     F E +                            +   T 
Sbjct: 117 LFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTC 176

Query: 157 ALESMNVENAFTEVLTQIYR 176
           A ++ N+   F  V   I +
Sbjct: 177 ATDTENIRFVFAAVKDTILQ 196

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 85.6 bits (211), Expect = 3e-21
 Identities = 28/188 (14%), Positives = 55/188 (29%), Gaps = 24/188 (12%)

Query: 10  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDT 69
           Y    +++L+G    GKS ++ +            T G+       +     V   ++D 
Sbjct: 3   YRATHRLLLLGAGESGKSTIVKQMRILHVV----LTSGIFE----TKFQVDKVNFHMFDV 54

Query: 70  AGQERYRAITSAYYRGAVGALLVY-----------DVTRHVTFENVERWLKELRDHTDSN 118
            GQ   R      +      + V            D   +   E +  +     +     
Sbjct: 55  GGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRT 114

Query: 119 IVIMLVGNKADLRHLRAVSTEDATA-----FAERENTFFMETSALESMNVENAFTEVLTQ 173
           I ++L  NK DL   + ++ +         FA             E   V  A   +  +
Sbjct: 115 ISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDE 174

Query: 174 IYRVVSRK 181
             R+ +  
Sbjct: 175 FLRISTAS 182

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 83.6 bits (205), Expect = 6e-21
 Identities = 27/165 (16%), Positives = 56/165 (33%), Gaps = 9/165 (5%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            +++++G  G GK+ +L R    E       T              K +K Q+WD  G  
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEV-----VTTIPTIGFNVETVTYKNLKFQVWDLGGLT 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADL-- 130
             R     YY      + V D          +  L  + +  +    ++++  NK D+  
Sbjct: 61  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 120

Query: 131 -RHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
                 ++        +       +TSA +   ++ A   ++  +
Sbjct: 121 AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 165

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.8 bits (203), Expect = 1e-20
 Identities = 29/170 (17%), Positives = 60/170 (35%), Gaps = 17/170 (10%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
           K++ +G    GK+ LL     +       +T+   +   S       +K   +D  G  +
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIMLVGNKADLRH- 132
            R +   Y+    G + + D      F+     L  L +  +  ++  +++GNK D  + 
Sbjct: 57  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 116

Query: 133 ---------LRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQ 173
                    L  ++T  +     +        S +       AF + L+Q
Sbjct: 117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAF-QWLSQ 165

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.4 bits (205), Expect = 1e-20
 Identities = 35/202 (17%), Positives = 58/202 (28%), Gaps = 45/202 (22%)

Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
           L K++L+G    GKS  L +            T G+         + K V  ++ D  GQ
Sbjct: 2   LVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHE----YDFEIKNVPFKMVDVGGQ 54

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-----------LRDHTDSNIVI 121
              R      +      L +   +        +R               + +   SN+ I
Sbjct: 55  RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 114

Query: 122 MLVGNKADLRHLRAVSTEDATAFAERENT---------------------------FFME 154
           +L  NK DL   +         F E E                             +   
Sbjct: 115 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHF 174

Query: 155 TSALESMNVENAFTEVLTQIYR 176
           T+A+ + N+   F +V   I  
Sbjct: 175 TTAINTENIRLVFRDVKDTILH 196

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 76.9 bits (188), Expect = 4e-18
 Identities = 28/200 (14%), Positives = 62/200 (31%), Gaps = 46/200 (23%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            K++L+G    GKS ++ +      +       G+           K +  +++D  GQ 
Sbjct: 3   VKLLLLGAGESGKSTIVKQMKIIHEA-----GTGIVE----THFTFKDLHFKMFDVGGQR 53

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTF-----------ENVERWLKELRDHTDSNIVIM 122
             R      + G    +    ++ +              E+++ +     +   ++  I+
Sbjct: 54  SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 113

Query: 123 LVGNKADLRHLRAVSTEDATAFAERENT--------------------------FFMETS 156
           L  NK DL   +   +     + E   +                          +   T 
Sbjct: 114 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTC 173

Query: 157 ALESMNVENAFTEVLTQIYR 176
           A ++ NV+  F  V   I +
Sbjct: 174 ATDTKNVQFVFDAVTDVIIK 193

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.7 bits (182), Expect = 3e-17
 Identities = 23/162 (14%), Positives = 57/162 (35%), Gaps = 7/162 (4%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER 74
            V+ +G    GK+ L  R    ++  +++++I    A   +  +       I     +  
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYR-DTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60

Query: 75  YRAITSAYYRGAVGALLVYDVTRHVTF-ENVERWLKELRDH---TDSNIVIMLVGNKADL 130
              +   +   A   + V D        ++V  +L ++        ++  +++  NK D+
Sbjct: 61  RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120

Query: 131 RHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLT 172
               A S +      E+E      T +     ++++ T    
Sbjct: 121 --AMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQ 160

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 71.7 bits (174), Expect = 3e-16
 Identities = 26/181 (14%), Positives = 49/181 (27%), Gaps = 21/181 (11%)

Query: 10  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDT 69
           Y    K+V +G    GK+ LL     +      +    +   +  +              
Sbjct: 10  YKKTGKLVFLGLDNAGKTTLLHMLKDDRL---GQHVPTLHPTSEELTIAGMTFTTFDLGG 66

Query: 70  AGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKA 128
               + R +   Y     G + + D   H      +  L   + D T +N+ I+++GNK 
Sbjct: 67  --HIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKI 124

Query: 129 DLRHLRAVS---------------TEDATAFAERENTFFMETSALESMNVENAFTEVLTQ 173
           D     +                    +              S L+       F  +   
Sbjct: 125 DRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 184

Query: 174 I 174
           I
Sbjct: 185 I 185

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.7 bits (138), Expect = 5e-11
 Identities = 32/205 (15%), Positives = 64/205 (31%), Gaps = 27/205 (13%)

Query: 12  YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAG 71
           Y   +++ G    GK++LL+  T +      + T+  +    +   D   V   + D  G
Sbjct: 2   YQPSIIIAGPQNSGKTSLLTLLTTDSV----RPTVVSQEPLSAADYDGSGV--TLVDFPG 55

Query: 72  QERYRAITSAYYRGAVGA-----LLVYDVTRHVTFENVERWLKELRDHTDS----NIVIM 122
             + R   S Y +           +V              +L ++   T+S     I I+
Sbjct: 56  HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 115

Query: 123 LVGNKADLRHLRAVSTEDATAFAERE----------NTFFMETSALESMNVENAFTEVLT 172
           +  NK++L    A          E E          +   +E    E    EN    + +
Sbjct: 116 IACNKSEL--FTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQS 173

Query: 173 QIYRVVSRKALEIGDDPAALPKGQT 197
                 +     +     ++ K + 
Sbjct: 174 TDGFKFANLEASVVAFEGSINKRKI 198

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 53.6 bits (127), Expect = 7e-10
 Identities = 23/152 (15%), Positives = 41/152 (26%), Gaps = 1/152 (0%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            KVV+ G    GKS+LL+     E ++ +    G              +   I DTAG  
Sbjct: 2   MKVVIAGRPNAGKSSLLNALAGREAAIVTD-IAGTTRDVLREHIHIDGMPLHIIDTAGLR 60

Query: 74  RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL 133
                            +          +       +  +     I  +       +   
Sbjct: 61  EASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRN 120

Query: 134 RAVSTEDATAFAERENTFFMETSALESMNVEN 165
           +A  T +    +E      +  SA     V+ 
Sbjct: 121 KADITGETLGMSEVNGHALIRLSARTGEGVDV 152

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.1 bits (124), Expect = 1e-08
 Identities = 20/137 (14%), Positives = 36/137 (26%), Gaps = 8/137 (5%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQI--WDTAG 71
             V + G++G GKS+ ++         E  +  GV   T             +  WD  G
Sbjct: 57  LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPG 116

Query: 72  QERYRAITSAYYR--GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKAD 129
                     Y              ++     +N     K +            V  K D
Sbjct: 117 IGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMM---KKEFYFVRTKVD 173

Query: 130 LRHLRAVSTEDATAFAE 146
              +   +  +   F +
Sbjct: 174 -SDITNEADGEPQTFDK 189

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 44.6 bits (104), Expect = 2e-06
 Identities = 25/184 (13%), Positives = 57/184 (30%), Gaps = 13/184 (7%)

Query: 16  VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ--- 72
           V L+G    GKS+LL+  TR    +       +      +    +  +  + D  G    
Sbjct: 4   VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSP-NLGVVEVSEEERFTLADIPGIIEG 62

Query: 73  -ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERW--LKELRDHTDSNIVIMLVGNKAD 129
               + +   + R      ++  V               KE+  +  + +    +     
Sbjct: 63  ASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNK 122

Query: 130 LRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDP 189
           +  L   + +       RE    +  SAL    +      +   ++ +V  ++    + P
Sbjct: 123 VDLLEEEAVKALADALAREGLAVLPVSALTGAGLP----ALKEALHALV--RSTPPPEMP 176

Query: 190 AALP 193
             +P
Sbjct: 177 KPVP 180

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 43.6 bits (101), Expect = 3e-06
 Identities = 21/165 (12%), Positives = 47/165 (28%), Gaps = 10/165 (6%)

Query: 11  DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTA 70
           D   +V   G S  GKS+ L+  T  +    +  T G           D      +    
Sbjct: 14  DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYG 73

Query: 71  GQ-------ERYRAITSAYYRGAVGALLVYDVTRHVTF--ENVERWLKELRDHTDSNIVI 121
                     +++     Y         +  +        +  ++ ++   D   + +V+
Sbjct: 74  YAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVL 133

Query: 122 MLVGNKADLRHLRAVSTEDATAFAER-ENTFFMETSALESMNVEN 165
           +   +K      +A       A      +      S+L+   V+ 
Sbjct: 134 LTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDK 178

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 41.9 bits (97), Expect = 1e-05
 Identities = 29/164 (17%), Positives = 55/164 (33%), Gaps = 9/164 (5%)

Query: 15  KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAG--Q 72
           ++V++G   VGKS LL+R    + ++ +    G      S     + +  +I DTAG   
Sbjct: 2   RMVIVGKPNVGKSTLLNRLLNEDRAIVTD-IPGTTRDVISEEIVIRGILFRIVDTAGVRS 60

Query: 73  ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH 132
           E    +        +  +   D+   V   +     ++ +          LV        
Sbjct: 61  ETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVV 120

Query: 133 LRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYR 176
            +    E         +      SAL+   +E    ++   IYR
Sbjct: 121 EKINEEEIKNKLGTDRHMVK--ISALKGEGLE----KLEESIYR 158

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 41.7 bits (97), Expect = 2e-05
 Identities = 15/139 (10%), Positives = 41/139 (29%), Gaps = 14/139 (10%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKS--------TIGVEFATRSIRCDDK--IVK 63
             ++++G  GVGKS+ ++          S           +    A  ++   D   +++
Sbjct: 33  LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIE 92

Query: 64  AQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV--I 121
               +       ++         +  L V  +  +      +   K + D     I    
Sbjct: 93  GGYINDMALNIIKSFLLDKTIDVL--LYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKA 150

Query: 122 MLVGNKADLRHLRAVSTED 140
           ++    A       +  ++
Sbjct: 151 IVALTHAQFSPPDGLPYDE 169

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 40.1 bits (92), Expect = 6e-05
 Identities = 21/163 (12%), Positives = 41/163 (25%), Gaps = 5/163 (3%)

Query: 16  VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY 75
           V ++G   VGKS LL+     + +  S                +   +    DT G  + 
Sbjct: 8   VAIVGKPNVGKSTLLNNLLGVKVAPISP-RPQTTRKRLRGILTEGRRQIVFVDTPGLHKP 66

Query: 76  RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA 135
                 +    V   L          +       E      +   ++       + +   
Sbjct: 67  MDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLD 126

Query: 136 VSTEDATAFAERENTF----FMETSALESMNVENAFTEVLTQI 174
            +     A                SAL+   V     ++L  +
Sbjct: 127 AAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALM 169

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.0 bits (89), Expect = 1e-04
 Identities = 34/176 (19%), Positives = 60/176 (34%), Gaps = 14/176 (7%)

Query: 16  VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY 75
           V+++G   VGKS L ++  + + ++      GV         +      ++ DT G    
Sbjct: 3   VLIVGRPNVGKSTLFNKLVKKKKAIVE-DEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDN 61

Query: 76  RAITSAYYRGAV------GALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKAD 129
                +     V       A LV  V         E           S +  +LV NKA+
Sbjct: 62  PQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDE-SLADFLRKSTVDTILVANKAE 120

Query: 130 LRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEI 185
              LR    E             +  SA  ++N++     +L  I + +  K L++
Sbjct: 121 N--LREFEREVKPELYSLGFGEPIPVSAEHNINLD----TMLETIIKKLEEKGLDL 170

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 38.9 bits (89), Expect = 1e-04
 Identities = 22/164 (13%), Positives = 50/164 (30%), Gaps = 6/164 (3%)

Query: 16  VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDT-----A 70
           + ++G   VGKS LL++    + S+ S+           I  +       +         
Sbjct: 8   IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 67

Query: 71  GQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL 130
            +   R +  A         LV  V     +   +  +        + + I+ V    ++
Sbjct: 68  KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPV-ILAVNKVDNV 126

Query: 131 RHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
           +    +        ++      +  SA   +NV+     V   +
Sbjct: 127 QEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL 170

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.1 bits (87), Expect = 3e-04
 Identities = 32/165 (19%), Positives = 51/165 (30%), Gaps = 14/165 (8%)

Query: 14  FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE 73
            KV ++G   VGKS L +     E +L S    G               K    DTAG  
Sbjct: 9   IKVAIVGRPNVGKSTLFNAILNKERALVSP-IPGTTRDPVDDEVFIDGRKYVFVDTAGLR 67

Query: 74  RYRAITS--------AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVG 125
           R   +               ++    V  +    T     +  +            ++V 
Sbjct: 68  RKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVF 127

Query: 126 NKADLRHLRAVSTEDATAFAERENTF-----FMETSALESMNVEN 165
           NK DL   R    ++ T     +  F      + TSA +  N++ 
Sbjct: 128 NKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDR 172

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 37.8 bits (86), Expect = 3e-04
 Identities = 21/177 (11%), Positives = 50/177 (28%), Gaps = 13/177 (7%)

Query: 13  LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ 72
           L ++ L G S VGKS+ ++     +    + S  G          +D++    +      
Sbjct: 23  LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFA 82

Query: 73  ERYRAITS------AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGN 126
           +  ++           Y      L        +        ++         I ++++  
Sbjct: 83  KVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIAT 142

Query: 127 KADL---RHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSR 180
           KAD          +               +  S+      +    E    I ++++R
Sbjct: 143 KADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKD----EAWGAIKKMINR 195

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 37.4 bits (85), Expect = 5e-04
 Identities = 26/180 (14%), Positives = 49/180 (27%), Gaps = 22/180 (12%)

Query: 16  VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY 75
           ++  G S VGKS L+ R T  +     +  +  +      +    I         G  + 
Sbjct: 3   IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKE 62

Query: 76  RAITSAYYRGAVGA---------LLVYDVTRHVTFENVERWLKELRDHT-------DSNI 119
                                  +LV D               E+           + +I
Sbjct: 63  VQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDI 122

Query: 120 VIMLVGNKADL-----RHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 174
             ++  NK D        +  ++ +     +E +  F    SA    N+E     +   I
Sbjct: 123 PTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFI-PISAKFGDNIERLKNRIFEVI 181

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 25/169 (14%), Positives = 52/169 (30%), Gaps = 11/169 (6%)

Query: 16  VVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY 75
           V L+G   VGKS LLS  +  +  +       +      +  DD      + D  G    
Sbjct: 4   VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEG 62

Query: 76  ----RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR 131
                 +   + R      ++  V      E  + +   L  + + +   + +  +  + 
Sbjct: 63  AHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQII 122

Query: 132 HLRAVSTEDATAFAER------ENTFFMETSALESMNVENAFTEVLTQI 174
               +   +A    E       ++      SA+    +     EV  Q+
Sbjct: 123 VANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQL 171

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	217
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	100.0
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.97
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.96
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.96
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.96
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.95
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.92
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.92
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.92
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.91
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.91
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.91
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.91
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.91
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.91
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.9
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.89
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.89
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.88
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.88
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.88
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.87
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.86
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.86
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.85
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.85
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.84
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.84
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.83
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.8
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.78
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.77
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.73
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.73
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.68
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.68
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.64
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.63
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.62
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.6
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.6
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.53
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.43
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.37
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.37
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.37
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.32
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.29
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.19
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.13
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.82
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.45
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.44
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.43
d1okkd2	207	GTPase domain of the signal recognition particle r	98.35
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.32
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.3
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.28
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.25
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.25
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.25
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.14
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.04
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.71
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.66
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.64
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.64
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.64
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.55
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.51
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.49
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.49
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.47
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.47
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.46
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.42
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.41
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.38
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.35
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.33
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.3
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.25
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.24
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.21
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.2
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.19
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.19
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.19
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.18
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.14
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.14
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.12
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.1
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.08
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.08
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.08
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.07
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.06
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.05
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.04
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.03
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.03
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.01
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.01
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.0
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.98
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.98
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.97
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.94
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.92
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.92
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	96.9
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.9
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.87
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.87
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.86
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.86
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.84
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.82
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.81
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.81
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.81
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.8
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.79
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.77
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.74
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.73
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.73
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.72
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.69
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.67
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.63
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.63
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.59
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.59
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.57
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.56
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.52
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.47
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.43
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.39
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.35
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.28
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.26
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.24
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.2
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.18
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.09
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.05
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.04
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.96
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	95.96
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.91
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.79
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.78
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.72
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.68
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.64
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.59
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.56
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	95.54
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.5
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.41
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.4
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.35
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.28
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.25
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.21
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.11
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	94.96
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	94.94
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	94.94
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	94.92
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.88
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	94.83
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.8
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	94.79
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.78
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.71
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	94.65
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.65
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	94.64
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.62
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	94.59
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	94.54
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.52
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.47
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.42
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	94.33
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.18
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.15
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.02
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.02
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	93.92
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	93.83
d1tuea_	205	Replication protein E1 helicase domain {Human papi	93.79
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	93.61
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.49
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	93.41
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	93.37
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	92.85
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	92.7
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	92.57
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	92.34
d1xpua3	289	Transcription termination factor Rho, ATPase domai	92.22
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.17
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	91.85
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	91.81
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	91.39
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	91.22
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	89.51
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	89.05
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	89.04
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	87.89
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	86.97
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	86.56
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	85.75
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	85.5
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.3
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	84.99
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	84.35
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	84.26
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	84.19
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	84.11
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	83.84
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	83.27
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	83.25
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	83.07
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	82.3
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	81.16

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=9.7e-37  Score=218.25  Aligned_cols=167  Identities=41%  Similarity=0.766  Sum_probs=156.4

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      .++.+||+++|++|||||||+++|.++.+...+.++.+.+.....+...+..+.+.+|||||++.+..++..+++.+|++
T Consensus         2 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~   81 (169)
T d3raba_           2 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   81 (169)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEE
T ss_pred             CCeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            46789999999999999999999999999988889999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 027856           90 LLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTE  169 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  169 (217)
                      |+|||++++.++..+..|+..+........|+++|+||+|+.+.+.++.++++.+++.++++|+++||++|.|++++|++
T Consensus        82 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~  161 (169)
T d3raba_          82 ILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFER  161 (169)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHH
Confidence            99999999999999999888887777778999999999999888888999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027856          170 VLTQIYR  176 (217)
Q Consensus       170 i~~~~~~  176 (217)
                      |++.+.+
T Consensus       162 l~~~i~e  168 (169)
T d3raba_         162 LVDVICE  168 (169)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhh
Confidence            9988764

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-36  Score=218.40  Aligned_cols=169  Identities=43%  Similarity=0.770  Sum_probs=158.1

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      .+..+||+++|.+|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+..++..++++++++
T Consensus         2 ~~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~   81 (171)
T d2ew1a1           2 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL   81 (171)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceE
Confidence            56789999999999999999999999999988889999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 027856           90 LLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTE  169 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  169 (217)
                      ++|+|.+++.+++.+..|+..+........|+++|+||+|+.+...+..++++++++..++++++|||++|.|++++|.+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~  161 (171)
T d2ew1a1          82 ILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLD  161 (171)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHH
Confidence            99999999999999999999888777778999999999999887888999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 027856          170 VLTQIYRVV  178 (217)
Q Consensus       170 i~~~~~~~~  178 (217)
                      |++.+....
T Consensus       162 l~~~l~~~~  170 (171)
T d2ew1a1         162 LACRLISEA  170 (171)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            998887543

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.7e-37  Score=218.09  Aligned_cols=165  Identities=39%  Similarity=0.689  Sum_probs=149.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..+||+++|.+|||||||+++|+++.+...+.++.+.+........++..+.+.+||++|++.+..++..+++++|++++
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 027856           92 VYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~  171 (217)
                      |||+++++|++.+..|+..+........|+++|+||+|+...+.++.++++++++.++++|+++||++|.|++++|.+|+
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~  161 (167)
T d1z08a1          82 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC  161 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             EEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHH
Confidence            99999999999999999888777667889999999999988888999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 027856          172 TQIYR  176 (217)
Q Consensus       172 ~~~~~  176 (217)
                      +.+++
T Consensus       162 ~~i~~  166 (167)
T d1z08a1         162 KRMIE  166 (167)
T ss_dssp             HHHHC
T ss_pred             HHHhh
Confidence            98864

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-36  Score=216.05  Aligned_cols=172  Identities=81%  Similarity=1.213  Sum_probs=157.8

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      +..+||+|+|.+|||||||+++|+++.+...+.++.+.+.....+.+++..+.+.+||++|++.+...+..+++.+|+++
T Consensus         2 ~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i   81 (175)
T d2f9la1           2 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   81 (175)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEE
Confidence            56799999999999999999999999999888888888888899999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856           91 LVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  170 (217)
                      +|||.+++.|+..+..|+..+......+.|+++|+||+|+.+.+....+....+...++.+++++||++|.|++++|+++
T Consensus        82 ~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l  161 (175)
T d2f9la1          82 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI  161 (175)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHHH
Confidence            99999999999999999999988887889999999999998877788888888888999999999999999999999999


Q ss_pred             HHHHHHHHhhhh
Q 027856          171 LTQIYRVVSRKA  182 (217)
Q Consensus       171 ~~~~~~~~~~~~  182 (217)
                      ++.+.+...+++
T Consensus       162 ~~~i~~~~~~~q  173 (175)
T d2f9la1         162 LTEIYRIVSQKQ  173 (175)
T ss_dssp             HHHHHHHHHTSC
T ss_pred             HHHHHHHhhhcc
Confidence            999988777654

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-36  Score=216.97  Aligned_cols=163  Identities=36%  Similarity=0.624  Sum_probs=153.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|++|||||||+++|+++.+...+.+|.+.+........++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            48999999999999999999999999988889999888888999999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 027856           93 YDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLT  172 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  172 (217)
                      ||++++.|++.+..|+..+.... .+.|+++|+||+|+.+.+.+..++++++++.++++|+++||++|.|++++|+.|++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~  160 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE  160 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred             EeccchhhhhhcccccccccccC-CCceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHH
Confidence            99999999999999999987765 47999999999999888889999999999999999999999999999999999999


Q ss_pred             HHHH
Q 027856          173 QIYR  176 (217)
Q Consensus       173 ~~~~  176 (217)
                      .+++
T Consensus       161 ~~lq  164 (164)
T d1z2aa1         161 KHLQ  164 (164)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            8763

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-36  Score=215.13  Aligned_cols=171  Identities=48%  Similarity=0.804  Sum_probs=159.8

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      .+..+||+|+|.+|||||||+++|..+.+...+.++.+.......+..++..+.+.+||+||++.+..++..++..++++
T Consensus         2 ~~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   81 (174)
T d2bmea1           2 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA   81 (174)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred             ccEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEE
Confidence            46789999999999999999999999999999989999988888888899999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 027856           90 LLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTE  169 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  169 (217)
                      ++|+|.+++.++..+..|+..+......+.|+++|+||+|+.........++..++...+++|+++||++|.|++++|.+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~  161 (174)
T d2bmea1          82 LLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQ  161 (174)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHH
Confidence            99999999999999999999988887788999999999999887888889999999999999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 027856          170 VLTQIYRVVSR  180 (217)
Q Consensus       170 i~~~~~~~~~~  180 (217)
                      +++.+.++...
T Consensus       162 l~~~i~~~~~~  172 (174)
T d2bmea1         162 CARKILNKIES  172 (174)
T ss_dssp             HHHHHHHHHHS
T ss_pred             HHHHHHHHHhc
Confidence            99999877654

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-36  Score=216.51  Aligned_cols=170  Identities=30%  Similarity=0.475  Sum_probs=153.5

Q ss_pred             CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCc
Q 027856            8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAV   87 (217)
Q Consensus         8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   87 (217)
                      +++...+||+|+|.+|||||||+++|+.+.+...+.++. .+.....+.+++..+.+.+||++|.+.+...+..+++.+|
T Consensus         1 p~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~-~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~   79 (173)
T d2fn4a1           1 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTI-EDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGH   79 (173)
T ss_dssp             CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTC-CEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCS
T ss_pred             CCCCCeEEEEEECCCCcCHHHHHHHHHhCCCCccccccc-ccceeeEeccCCeeeeeeccccccccccccccchhhccce
Confidence            356778999999999999999999999999988887775 4555677888999999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Q 027856           88 GALLVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENA  166 (217)
Q Consensus        88 ~ii~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  166 (217)
                      ++++|||++++.|++.+..|+..+.... ..+.|+++|+||+|+.+.+....+++..++..++++|+++||++|.|++++
T Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~  159 (173)
T d2fn4a1          80 GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEA  159 (173)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             eeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHH
Confidence            9999999999999999999999876543 357899999999999887888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027856          167 FTEVLTQIYRVV  178 (217)
Q Consensus       167 ~~~i~~~~~~~~  178 (217)
                      |+.|++.+.+.+
T Consensus       160 f~~l~~~i~k~~  171 (173)
T d2fn4a1         160 FEQLVRAVRKYQ  171 (173)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999887654

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-36  Score=214.30  Aligned_cols=165  Identities=52%  Similarity=0.880  Sum_probs=155.6

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      +..+||+|+|++|+|||||+++|+++.+...+.++.+.+.......+++..+.+.+||++|++.+..++..+++.+|+++
T Consensus         2 ~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~i   81 (166)
T d1z0fa1           2 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   81 (166)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEE
Confidence            56799999999999999999999999999988888888898899999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856           91 LVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  170 (217)
                      +|+|+++..|++.+..|+..+........|+++++||.|+........++++++++..+++++++||++|.|++++|.+|
T Consensus        82 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i  161 (166)
T d1z0fa1          82 MVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEA  161 (166)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999988887889999999999998878888899999999999999999999999999999999


Q ss_pred             HHHHH
Q 027856          171 LTQIY  175 (217)
Q Consensus       171 ~~~~~  175 (217)
                      ++.++
T Consensus       162 ~~~i~  166 (166)
T d1z0fa1         162 AKKIY  166 (166)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            98763

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-36  Score=213.70  Aligned_cols=164  Identities=32%  Similarity=0.382  Sum_probs=134.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|++|||||||+++|.+..+.... ++.+ +.....+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~-~~~~-~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~   79 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAG-HTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   79 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC----------C-EEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCcC-Ceee-eeecceeeccccccceeeeecccccccceecccchhhhhhhceec
Confidence            79999999999999999999998764433 3333 344556778999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 027856           94 DVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLT  172 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  172 (217)
                      |++++.+++.+..|+..+..... ...|+++|+||+|+.+.++++..++++++..++++|+++||++|.|++++|+.|++
T Consensus        80 d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~  159 (168)
T d2gjsa1          80 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR  159 (168)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHH
T ss_pred             cccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHH
Confidence            99999999999999999876653 56899999999999888889999999999999999999999999999999999999


Q ss_pred             HHHHHHh
Q 027856          173 QIYRVVS  179 (217)
Q Consensus       173 ~~~~~~~  179 (217)
                      .+..++.
T Consensus       160 ~i~~~~~  166 (168)
T d2gjsa1         160 QIRLRRD  166 (168)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            8876654

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.4e-35  Score=215.47  Aligned_cols=176  Identities=49%  Similarity=0.824  Sum_probs=163.2

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      +.+..+||+|+|.+|||||||+++|+++.+...+.++.+.......+.+.+..+.+.+|||+|++.+..++..+++.+++
T Consensus         2 ~~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~   81 (194)
T d2bcgy1           2 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG   81 (194)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence            45778999999999999999999999999999999999999888889999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 027856           89 ALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFT  168 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  168 (217)
                      +|+|||++++.++..+..|+..+........|+++|+||.|+.+...+..++...++...++.|+++||++|.|++++|+
T Consensus        82 ~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~  161 (194)
T d2bcgy1          82 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL  161 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHH
Confidence            99999999999999999999888887778899999999999998888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhc
Q 027856          169 EVLTQIYRVVSRKALE  184 (217)
Q Consensus       169 ~i~~~~~~~~~~~~~~  184 (217)
                      .|++.+.+...+....
T Consensus       162 ~l~~~i~~~~~~~~~~  177 (194)
T d2bcgy1         162 TMARQIKESMSQQNLN  177 (194)
T ss_dssp             HHHHHHHHHCCHHHHH
T ss_pred             HHHHHHHHHhhhcccC
Confidence            9999998876654333

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.4e-36  Score=212.60  Aligned_cols=161  Identities=38%  Similarity=0.742  Sum_probs=152.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|.+|||||||+++|.++.+...+.++.+..........++..+.+.+||++|++.+...+..++..+|++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            68999999999999999999999999999999998888888888999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 027856           94 DVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  173 (217)
                      |++++.+++.+..|+..+......+.|+++|+||.|+.+.+....+++.++++.+++.|+++||++|.|++++|++|++.
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~  160 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA  160 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHh
Confidence            99999999999999999888777789999999999998878889999999999999999999999999999999999986


Q ss_pred             H
Q 027856          174 I  174 (217)
Q Consensus       174 ~  174 (217)
                      +
T Consensus       161 l  161 (164)
T d1yzqa1         161 L  161 (164)
T ss_dssp             S
T ss_pred             h
Confidence            5

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.8e-35  Score=210.20  Aligned_cols=163  Identities=40%  Similarity=0.771  Sum_probs=154.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..+||+++|.+|||||||+++|..+.+...+.+|.+..........+.....+.+||++|++.+..++..+++.++++++
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII   82 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEE
Confidence            46899999999999999999999999999999999999988888889999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 027856           92 VYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~  171 (217)
                      |||++++.+++.+..|+..+........|+++|+||+|+.+.+.+..+++++++...++.|+++||++|.|++++|.+|+
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l~  162 (167)
T d1z0ja1          83 VYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEIS  162 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             EeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence            99999999999999999998888888999999999999988888999999999999999999999999999999999998


Q ss_pred             HHH
Q 027856          172 TQI  174 (217)
Q Consensus       172 ~~~  174 (217)
                      +.+
T Consensus       163 ~~i  165 (167)
T d1z0ja1         163 RRI  165 (167)
T ss_dssp             HHC
T ss_pred             HhC
Confidence            765

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-35  Score=211.83  Aligned_cols=169  Identities=53%  Similarity=0.879  Sum_probs=153.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      +.+||+|+|++|||||||+++|+++.+...+.++.+...........+..+.+.+||++|++.+..++..++..+|++++
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            46899999999999999999999999988888888888888888889999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 027856           92 VYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~  171 (217)
                      |||++++.+++.+..|+..+......+.|+++|+||+|+...+....+++..++..++++|+++||++|.|++++|.+|+
T Consensus        82 v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~  161 (173)
T d2a5ja1          82 VYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTA  161 (173)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             EEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999999999888778899999999999988788889999999999999999999999999999999999


Q ss_pred             HHHHHHHhh
Q 027856          172 TQIYRVVSR  180 (217)
Q Consensus       172 ~~~~~~~~~  180 (217)
                      +.+++...+
T Consensus       162 ~~i~~~~~~  170 (173)
T d2a5ja1         162 KEIYRKIQQ  170 (173)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHc
Confidence            998866543

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.1e-36  Score=214.20  Aligned_cols=170  Identities=48%  Similarity=0.819  Sum_probs=129.6

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      .+..+||+|+|.+|||||||+++|+++.+...+.++.+.+.....+.+++..+.+.+|||||++.+..++..+++.+|++
T Consensus         3 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~   82 (173)
T d2fu5c1           3 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   82 (173)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred             ccEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEE
Confidence            46789999999999999999999999999888889999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Q 027856           90 LLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTE  169 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  169 (217)
                      |+|||++++.|++.+..|+..+......+.|+++|+||.|....+....+++..++...++.|+++||++|.|+.++|++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~  162 (173)
T d2fu5c1          83 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFT  162 (173)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHH
T ss_pred             EEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998777788999999999999887788888899999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 027856          170 VLTQIYRVVS  179 (217)
Q Consensus       170 i~~~~~~~~~  179 (217)
                      |++.+.+...
T Consensus       163 l~~~i~~k~~  172 (173)
T d2fu5c1         163 LARDIKAKMD  172 (173)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhcC
Confidence            9998876543

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=1.2e-35  Score=212.27  Aligned_cols=163  Identities=35%  Similarity=0.544  Sum_probs=146.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      +.+||+|+|++|||||||+++|+.+.+...+.+|.+..+ ...+.+++..+.+.+||++|++.+..++..+++++|++++
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccc-ccccccccccccccccccccccchhhhhhhcccccceeEE
Confidence            568999999999999999999999999888888887665 4566789999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856           92 VYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  170 (217)
                      |||.+++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.++.++++.++..+++.|+++||++|.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l  161 (168)
T d1u8za_          82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            999999999999999999887654 4688999999999998888899999999999999999999999999999999999


Q ss_pred             HHHHH
Q 027856          171 LTQIY  175 (217)
Q Consensus       171 ~~~~~  175 (217)
                      ++.+.
T Consensus       162 ~~~i~  166 (168)
T d1u8za_         162 MREIR  166 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98875

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.8e-35  Score=209.89  Aligned_cols=164  Identities=33%  Similarity=0.538  Sum_probs=149.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      +.+||+++|++|||||||+++|+++.+...+.++.+..+ ...+..++..+.+.+||++|.+.+...+..+++.+|++++
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ll   81 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI   81 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecc-ccccccccccccccccccccccccccchhhhhhhccEEEE
Confidence            468999999999999999999999999888888876544 4556789999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCC-CHHHHHHH
Q 027856           92 VYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESM-NVENAFTE  169 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~~  169 (217)
                      |||++++.|++.+..|+..+.+.. ..+.|+++|+||+|+...+.++.+++.+++..++++|+++||+++. |++++|..
T Consensus        82 v~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~~  161 (169)
T d1x1ra1          82 VYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHD  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHH
T ss_pred             ecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHHH
Confidence            999999999999999999987654 3578999999999999888899999999999999999999999875 99999999


Q ss_pred             HHHHHHH
Q 027856          170 VLTQIYR  176 (217)
Q Consensus       170 i~~~~~~  176 (217)
                      |++.+.+
T Consensus       162 l~~~i~~  168 (169)
T d1x1ra1         162 LVRVIRQ  168 (169)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998875

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-35  Score=210.78  Aligned_cols=163  Identities=34%  Similarity=0.449  Sum_probs=149.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..+||+|+|++|||||||+++|+++.+...+.+|.+.++ ...+.+++..+.+.+||++|.+.+..++..++..+|++++
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   81 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence            458999999999999999999999999888888887765 4567789999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856           92 VYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  170 (217)
                      |||++++.|++.+..|+..+.... ..+.|+++|+||+|+...+.++.++++++++.+++.|+++||++|.|++++|+.|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~l  161 (167)
T d1xtqa1          82 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI  161 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHH
T ss_pred             hcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH
Confidence            999999999999999998887654 3578999999999998888899999999999999999999999999999999999


Q ss_pred             HHHHH
Q 027856          171 LTQIY  175 (217)
Q Consensus       171 ~~~~~  175 (217)
                      ++.+.
T Consensus       162 i~~~~  166 (167)
T d1xtqa1         162 ILEAE  166 (167)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            98764

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.8e-35  Score=208.75  Aligned_cols=164  Identities=46%  Similarity=0.772  Sum_probs=154.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..+||+|+|.+|||||||+++|+.+.+...+.++.+...........+..+.+.+||++|++.+...+..++++++++++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   84 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence            36899999999999999999999999999998999999988899899999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 027856           92 VYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~  171 (217)
                      |+|.+++.+++.+..|+..+.....++.|+++|+||+|+.+.+.++.+++++++..++++|+++||++|.|++++|+.|+
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~  164 (170)
T d1r2qa_          85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA  164 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999999998887778999999999999998888999999999999999999999999999999999998


Q ss_pred             HHHH
Q 027856          172 TQIY  175 (217)
Q Consensus       172 ~~~~  175 (217)
                      +.+.
T Consensus       165 ~~i~  168 (170)
T d1r2qa_         165 KKLP  168 (170)
T ss_dssp             HTSC
T ss_pred             HHHh
Confidence            7654

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-35  Score=212.81  Aligned_cols=171  Identities=40%  Similarity=0.703  Sum_probs=151.8

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECC----------eEEEEEEEeCCChhhhhhhh
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDD----------KIVKAQIWDTAGQERYRAIT   79 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~Dt~G~~~~~~~~   79 (217)
                      .+..+||+|+|++|||||||+++|+++.+...+.++.+.++....+.+++          ..+.+.+|||+|++.+..++
T Consensus         2 ~d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~   81 (186)
T d2f7sa1           2 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT   81 (186)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHH
Confidence            56789999999999999999999999999888888887777666665533          34789999999999999999


Q ss_pred             hhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecC
Q 027856           80 SAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSAL  158 (217)
Q Consensus        80 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  158 (217)
                      ..+++++|++|+|||++++.+++.+..|+..+.... ....|+++|+||.|+.+.+++..+++.++++.++++|+++||+
T Consensus        82 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak  161 (186)
T d2f7sa1          82 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAA  161 (186)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTT
T ss_pred             HHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeCC
Confidence            999999999999999999999999999998776543 3567899999999999888999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhh
Q 027856          159 ESMNVENAFTEVLTQIYRVVSR  180 (217)
Q Consensus       159 ~~~~i~~~~~~i~~~~~~~~~~  180 (217)
                      +|.|++++|++|++.+.+...+
T Consensus       162 ~~~~i~e~f~~l~~~i~~k~~~  183 (186)
T d2f7sa1         162 TGQNVEKAVETLLDLIMKRMEQ  183 (186)
T ss_dssp             TTBTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHh
Confidence            9999999999999988866543

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-35  Score=212.10  Aligned_cols=165  Identities=27%  Similarity=0.463  Sum_probs=144.4

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      +....+||+|+|.+|||||||+++|+.+.+...+.+|.+. .....+...+..+.+.+||++|++.+...+..+++.+|+
T Consensus         5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~-~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~   83 (185)
T d2atxa1           5 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV   83 (185)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCC-CEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceee-eeeEEEeeCCceEEeecccccccchhhhhhhhcccccce
Confidence            5678899999999999999999999999998888888764 455666678888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCCC------------ccCCCHHHHHHHHHHcC-CcEEE
Q 027856           89 ALLVYDVTRHVTFENVER-WLKELRDHTDSNIVIMLVGNKADLRH------------LRAVSTEDATAFAEREN-TFFME  154 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~  154 (217)
                      +++|||+++++|++.+.. |+..+.. ...+.|+++|+||+|+.+            .+.++.+++.+++..++ +.|++
T Consensus        84 ~ilv~d~t~~~Sf~~~~~~~~~~~~~-~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E  162 (185)
T d2atxa1          84 FLICFSVVNPASFQNVKEEWVPELKE-YAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVE  162 (185)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHH-HSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEE
T ss_pred             eeeccccchHHHHHHHHHHHHHHHHh-cCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEE
Confidence            999999999999998765 5555544 456899999999999864            35678899999999987 68999


Q ss_pred             EecCCCCCHHHHHHHHHHHHH
Q 027856          155 TSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       155 ~Sa~~~~~i~~~~~~i~~~~~  175 (217)
                      |||++|.|++++|+.+++.++
T Consensus       163 ~SAk~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         163 CSALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHH
T ss_pred             ecCCCCcCHHHHHHHHHHHHc
Confidence            999999999999999998874

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-34  Score=207.63  Aligned_cols=164  Identities=34%  Similarity=0.559  Sum_probs=144.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|.+|||||||+++|+++.+...+.++.+ +.....+.+++..+.+.+||++|.+.+...+..+++.+|++++|
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   83 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV   83 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEEEe
Confidence            48999999999999999999999998888878766 45566777899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 027856           93 YDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~  171 (217)
                      ||.+++.|++.+..|+..+.... ....|+++|+||+|+...+.+..+++.++++.++++|++|||++|.|++++|..|+
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~  163 (171)
T d2erya1          84 FSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELV  163 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             eccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHHH
Confidence            99999999999999988776544 35789999999999988888999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027856          172 TQIYRV  177 (217)
Q Consensus       172 ~~~~~~  177 (217)
                      +.+.++
T Consensus       164 ~~i~k~  169 (171)
T d2erya1         164 RVIRKF  169 (171)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            987543

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-34  Score=209.15  Aligned_cols=162  Identities=28%  Similarity=0.386  Sum_probs=140.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|++|||||||+++|..+.+...+.+|.+.. .......++..+.+.+||++|++++...+..+++.+|++++|
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   81 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDN-YAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   81 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEE-EEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeee-cceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence            6899999999999999999999999998888888744 455566788899999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC------------ccCCCHHHHHHHHHHc-CCcEEEEecCC
Q 027856           93 YDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH------------LRAVSTEDATAFAERE-NTFFMETSALE  159 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~-~~~~~~~Sa~~  159 (217)
                      ||+++++|++.+..|+.........+.|+++|+||+|+.+            .+.+..+++++++... ++.|+++||++
T Consensus        82 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  161 (191)
T d2ngra_          82 FSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALT  161 (191)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTTT
T ss_pred             cccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCCC
Confidence            9999999999997654444444556899999999999853            2357889999999886 47899999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 027856          160 SMNVENAFTEVLTQIY  175 (217)
Q Consensus       160 ~~~i~~~~~~i~~~~~  175 (217)
                      |.|++++|+.+++.+.
T Consensus       162 ~~~V~e~f~~l~~~~~  177 (191)
T d2ngra_         162 QKGLKNVFDEAILAAL  177 (191)
T ss_dssp             CTTHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999987653

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.6e-35  Score=208.40  Aligned_cols=161  Identities=32%  Similarity=0.477  Sum_probs=145.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|.+|||||||+++|+++.+...+.+|.+..+ .....+++..+.+.+||++|.+.+...+..+++.+|++++|
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecc-ccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            58999999999999999999999999888888887554 44566889999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856           93 YDVTRHVTFENVERWLKELRDHTD--SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  170 (217)
                      ||++++++++.+..|+..+.....  .+.|+++|+||+|+...+.++.++++++++.++++|+++||++|.|++++|+.|
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l  160 (171)
T d2erxa1          81 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL  160 (171)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             eecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            999999999999999888765433  578999999999998888899999999999999999999999999999999999


Q ss_pred             HHHH
Q 027856          171 LTQI  174 (217)
Q Consensus       171 ~~~~  174 (217)
                      ++.+
T Consensus       161 ~~~~  164 (171)
T d2erxa1         161 LNLE  164 (171)
T ss_dssp             HHTC
T ss_pred             HHHH
Confidence            8643

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-34  Score=205.58  Aligned_cols=166  Identities=45%  Similarity=0.763  Sum_probs=144.8

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      .+..+||+|+|++|||||||+++|+.+.+.. .+.++.+.+.....+..++..+.+.+|||+|++.+..++..+++++|+
T Consensus         3 ~d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~   82 (170)
T d2g6ba1           3 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   82 (170)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             CceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCce
Confidence            4678999999999999999999999998754 445666788888888899999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 027856           89 ALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFT  168 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  168 (217)
                      +++|||.+++.++..+..|+..+........|+++|+||.|+.....+..+++..++..++++|+++||++|.|++++|+
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~  162 (170)
T d2g6ba1          83 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFT  162 (170)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             eEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence            99999999999999999988888777777899999999999998888999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027856          169 EVLTQIY  175 (217)
Q Consensus       169 ~i~~~~~  175 (217)
                      +|++.+.
T Consensus       163 ~l~~~i~  169 (170)
T d2g6ba1         163 AIAKELK  169 (170)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHcC
Confidence            9998765

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-34  Score=206.11  Aligned_cols=164  Identities=35%  Similarity=0.483  Sum_probs=143.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+|+|++|||||||+++|+.+.+...+.+|.+.++... ...++..+.+.+||++|.+.+. ....+++.++++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~-~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQ-ATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEE-EEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccccc-ccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            48999999999999999999999999999989988776444 4568889999999999987764 456688899999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCC-CHHHHHHHH
Q 027856           93 YDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESM-NVENAFTEV  170 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~~i  170 (217)
                      ||++++.++..+..|+....... ..+.|+++|+||+|+...+.++.+++++++..++++|+++||++|. |++++|..|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l  159 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL  159 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred             cccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHH
Confidence            99999999999988877655433 3579999999999998878899999999999999999999999998 599999999


Q ss_pred             HHHHHHHH
Q 027856          171 LTQIYRVV  178 (217)
Q Consensus       171 ~~~~~~~~  178 (217)
                      ++.+.+++
T Consensus       160 ~~~i~~~r  167 (168)
T d2atva1         160 CREVRRRR  167 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99887654

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-34  Score=206.66  Aligned_cols=163  Identities=29%  Similarity=0.381  Sum_probs=142.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      ..||+|+|++|||||||+++|..+.+...+.+|.+ +........++..+.+.+||++|++.+...+..+++++|++++|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            57999999999999999999999999988888876 44556677889999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCc------------cCCCHHHHHHHHHHcC-CcEEEEecCC
Q 027856           93 YDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL------------RAVSTEDATAFAEREN-TFFMETSALE  159 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~  159 (217)
                      ||++++.|++.+..|+..+.....++.|+++|+||+|+.+.            +.++.+++..+++..+ ..|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            99999999998876544444444568999999999999642            4578889999999988 4799999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 027856          160 SMNVENAFTEVLTQIYR  176 (217)
Q Consensus       160 ~~~i~~~~~~i~~~~~~  176 (217)
                      |.|++++|+.+++.+++
T Consensus       161 ~~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         161 KDGVREVFEMATRAALQ  177 (177)
T ss_dssp             CTTHHHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHHHhC
Confidence            99999999999998763

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.9e-34  Score=204.75  Aligned_cols=163  Identities=40%  Similarity=0.709  Sum_probs=151.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..+||+++|++|||||||+++|+++.+...+.++.+.++....+..++..+.+.+||++|++.+..++..++..+|++++
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence            36899999999999999999999999999999999999888899999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC---ccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Q 027856           92 VYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH---LRAVSTEDATAFAERENTFFMETSALESMNVENAFT  168 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  168 (217)
                      |||.+++.+++.+..|+..+........|+++++||.|+.+   .+.+..+++.++++..+++|+++||++|.|++++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~  161 (170)
T d1ek0a_          82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence            99999999999999999888877777899999999999854   367888999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027856          169 EVLTQI  174 (217)
Q Consensus       169 ~i~~~~  174 (217)
                      .|++.+
T Consensus       162 ~i~~~i  167 (170)
T d1ek0a_         162 GIGEKI  167 (170)
T ss_dssp             HHHTTS
T ss_pred             HHHHHh
Confidence            988653

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-34  Score=204.85  Aligned_cols=163  Identities=32%  Similarity=0.516  Sum_probs=148.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..+||+++|++|||||||+++|+++.+...+.++.+ +.......+++..+.+.+||++|++.+...+..+++++|++++
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   80 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence            358999999999999999999999999888877776 4456677789999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Q 027856           92 VYDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEV  170 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  170 (217)
                      |||++++.++..+..|+..+..... .+.|+++|+||+|+...+.+..+++..++..++++|+++||++|.|++++|+.|
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~i  160 (167)
T d1kaoa_          81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI  160 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred             eeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHHH
Confidence            9999999999999999988876543 578999999999998888888999999999999999999999999999999999


Q ss_pred             HHHHH
Q 027856          171 LTQIY  175 (217)
Q Consensus       171 ~~~~~  175 (217)
                      ++.+.
T Consensus       161 ~~~i~  165 (167)
T d1kaoa_         161 VRQMN  165 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            98765

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-35  Score=211.35  Aligned_cols=161  Identities=32%  Similarity=0.589  Sum_probs=141.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..+||+++|++|||||||+++|+++.+...+.+|.+.++....+..++..+.+.+||++|++.+..++..+++++|++++
T Consensus         2 ~~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1i2ma_           2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII   81 (170)
T ss_dssp             EEEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhh
Confidence            46899999999999999999999999999999999999888888889999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 027856           92 VYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~  171 (217)
                      |||++++.|++.+..|+..+.... .+.|+++|+||+|+.....  .++...++...+++|+++||++|.|++++|.+|+
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~--~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~  158 (170)
T d1i2ma_          82 MFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  158 (170)
T ss_dssp             EEETTSGGGGTTHHHHHHHHHHHH-CSCCEEEEEECCCCSCSCC--TTTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHH
T ss_pred             ccccccccccchhHHHHHHHhhcc-CCCceeeecchhhhhhhhh--hhHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            999999999999999999887655 4899999999999976443  3445677888899999999999999999999999


Q ss_pred             HHHH
Q 027856          172 TQIY  175 (217)
Q Consensus       172 ~~~~  175 (217)
                      +.+.
T Consensus       159 ~~l~  162 (170)
T d1i2ma_         159 RKLI  162 (170)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            8886

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.1e-34  Score=204.51  Aligned_cols=163  Identities=44%  Similarity=0.783  Sum_probs=146.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|.+|+|||||+++|+++.+...+.+|.+.++....+.+++..+.+.+|||||++.+..++..+++++|++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Q 027856           93 YDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLT  172 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  172 (217)
                      ||.+++.+++.+..|+..+........|++++++|.|+.. +....+++.+++..++++++++||++|.|+.++|++|++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~  160 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK  160 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT-CCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             EECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhh-hhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHH
Confidence            9999999999999999888888878899999999999865 567788999999999999999999999999999999998


Q ss_pred             HHHH
Q 027856          173 QIYR  176 (217)
Q Consensus       173 ~~~~  176 (217)
                      .+.+
T Consensus       161 ~i~~  164 (166)
T d1g16a_         161 LIQE  164 (166)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8765

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-33  Score=203.23  Aligned_cols=168  Identities=46%  Similarity=0.761  Sum_probs=153.7

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      +.-..+||+|+|.+|+|||||+++|.++.+...+.++.+.......+.+++..+.+.+|||||++.+..++..++.++|+
T Consensus         3 ~~~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   82 (177)
T d1x3sa1           3 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG   82 (177)
T ss_dssp             TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred             cccceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            34567999999999999999999999999999988998888888888999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Q 027856           89 ALLVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAF  167 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  167 (217)
                      +++|||++++.+++.+..|+..+.... ....|+++++||.|... +.+...++.+++..+++.|+++||++|.|+.++|
T Consensus        83 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~-~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f  161 (177)
T d1x3sa1          83 VILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAF  161 (177)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEEECCCccccccchhhhhhhcccccccceeeEEEeecccccc-ccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHH
Confidence            999999999999999999999987654 34688999999999765 6788899999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027856          168 TEVLTQIYRV  177 (217)
Q Consensus       168 ~~i~~~~~~~  177 (217)
                      +++++.+.+.
T Consensus       162 ~~l~~~l~~~  171 (177)
T d1x3sa1         162 EELVEKIIQT  171 (177)
T ss_dssp             HHHHHHHHTS
T ss_pred             HHHHHHHccC
Confidence            9999988854

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-33  Score=200.72  Aligned_cols=162  Identities=32%  Similarity=0.530  Sum_probs=146.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+|+|++|||||||+++|+++.+...+.++.+..+... +...+..+.+.+||++|.+.+...+..++..++++++|
T Consensus         3 e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv   81 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEE-EEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccc-eeeeceeeeeeeeeccCccccccchhhhhhccccccee
Confidence            58999999999999999999999999888888887666544 55788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Q 027856           93 YDVTRHVTFENVERWLKELRDHTD-SNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVL  171 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~  171 (217)
                      +|.+++.+++.+..|+..+..... .++|+++|+||+|+.. +.+..+++++++..++++|+++||++|.|++++|.+|+
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i~  160 (166)
T d1ctqa_          82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV  160 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             ecccccccHHHHHHHHHHHHHhcCCCCCeEEEEeccccccc-ccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHH
Confidence            999999999999999999877654 5689999999999965 56778999999999999999999999999999999999


Q ss_pred             HHHHH
Q 027856          172 TQIYR  176 (217)
Q Consensus       172 ~~~~~  176 (217)
                      +.+.+
T Consensus       161 ~~i~~  165 (166)
T d1ctqa_         161 REIRQ  165 (166)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            88753

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-33  Score=201.69  Aligned_cols=163  Identities=31%  Similarity=0.511  Sum_probs=146.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..+||+++|++|||||||+++|..+.+...+.++.+..+ ...+..++..+.+.+||++|++.+...+..+++.+|++++
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   80 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence            358999999999999999999999999988888887554 4556678888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHc-CCcEEEEecCCCCCHHHHHHH
Q 027856           92 VYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERE-NTFFMETSALESMNVENAFTE  169 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~  169 (217)
                      |||++++.|++.+..|+..+.... .++.|+++|+||+|+........+++..++... +++|+++||++|.|++++|.+
T Consensus        81 v~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~  160 (167)
T d1c1ya_          81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD  160 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred             eeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHHH
Confidence            999999999999999999887654 357899999999999988888899999998874 688999999999999999999


Q ss_pred             HHHHHH
Q 027856          170 VLTQIY  175 (217)
Q Consensus       170 i~~~~~  175 (217)
                      |++.+.
T Consensus       161 l~~~i~  166 (167)
T d1c1ya_         161 LVRQIN  166 (167)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            998763

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4.3e-33  Score=201.75  Aligned_cols=171  Identities=40%  Similarity=0.700  Sum_probs=151.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+|+|.+|||||||+++|+++.+...+.+|.+.+.........+..+.+.+||++|...+...+..++..+|+++++
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            58999999999999999999999999999999999999999998899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCccCCCHHHHHHHHHH-cCCcEEEEecCCCCCHHHHH
Q 027856           93 YDVTRHVTFENVERWLKELRDHTD----SNIVIMLVGNKADLRHLRAVSTEDATAFAER-ENTFFMETSALESMNVENAF  167 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~  167 (217)
                      +|.+++.+++.+..|+..+.....    .+.|+++|+||+|+.+ +.+..++...++.. .+++++++||++|.|+.++|
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f  160 (184)
T d1vg8a_          82 FDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF  160 (184)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHH
T ss_pred             ecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc-cchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHH
Confidence            999999999999999988765432    3679999999999876 45667777777654 57899999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhc
Q 027856          168 TEVLTQIYRVVSRKALE  184 (217)
Q Consensus       168 ~~i~~~~~~~~~~~~~~  184 (217)
                      +++++.+.++..+.+..
T Consensus       161 ~~l~~~i~~~~~~~~~~  177 (184)
T d1vg8a_         161 QTIARNALKQETEVELY  177 (184)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccccccc
Confidence            99999998877665443

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-33  Score=199.77  Aligned_cols=164  Identities=29%  Similarity=0.409  Sum_probs=141.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCC---hhhhhhhhhhhhcCCcE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAG---QERYRAITSAYYRGAVG   88 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G---~~~~~~~~~~~~~~~d~   88 (217)
                      .+||+++|++|+|||||+++|.+..+.. ...++.+.+.....+.+++..+.+.+||+++   ++++  ++..+++.+|+
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~~   80 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDA   80 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCSE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccce
Confidence            5899999999999999999999887653 3445667777788888899999999999875   4444  56678999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Q 027856           89 ALLVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAF  167 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  167 (217)
                      +|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.++++.+++++++..++++|+++||++|.|++++|
T Consensus        81 ~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~f  160 (172)
T d2g3ya1          81 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF  160 (172)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             eeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHHH
Confidence            999999999999999999998887653 3579999999999998888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027856          168 TEVLTQIYRVV  178 (217)
Q Consensus       168 ~~i~~~~~~~~  178 (217)
                      +.|++.+..++
T Consensus       161 ~~l~~~i~~rr  171 (172)
T d2g3ya1         161 EGIVRQVRLRR  171 (172)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHcc
Confidence            99999886543

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-32  Score=197.73  Aligned_cols=164  Identities=40%  Similarity=0.716  Sum_probs=145.6

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...+||+|+|.+|||||||+++|+.+.+...+.+|.+..........++..+.+.+||++|.......+..++..+++++
T Consensus         4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   83 (174)
T d1wmsa_           4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL   83 (174)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEE
Confidence            35689999999999999999999999999989899999888888888999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhc----CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcC-CcEEEEecCCCCCHHH
Q 027856           91 LVYDVTRHVTFENVERWLKELRDHT----DSNIVIMLVGNKADLRHLRAVSTEDATAFAEREN-TFFMETSALESMNVEN  165 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~  165 (217)
                      +++|.+++.|++.+..|+..+....    ..+.|+++|+||.|+.+ +.+..++++++++..+ ++|+++||++|.|+++
T Consensus        84 ~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~-~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e  162 (174)
T d1wmsa_          84 LTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAA  162 (174)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHH
T ss_pred             EEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh-ccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHH
Confidence            9999999999999999998876543    24689999999999965 6788999999998864 8899999999999999


Q ss_pred             HHHHHHHHHH
Q 027856          166 AFTEVLTQIY  175 (217)
Q Consensus       166 ~~~~i~~~~~  175 (217)
                      +|++|++.++
T Consensus       163 ~f~~l~~~il  172 (174)
T d1wmsa_         163 AFEEAVRRVL  172 (174)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999886

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.1e-33  Score=200.94  Aligned_cols=166  Identities=37%  Similarity=0.681  Sum_probs=132.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEE-CCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRC-DDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      .+||+++|++|||||||+++|+++.+...+.++.+.......... +...+.+.+||++|++.+...+..+++.++++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            589999999999999999999999998888787777666666554 3445778999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCcc-CCCHHHHHHHHHHcC-CcEEEEecCCCCCHHH
Q 027856           92 VYDVTRHVTFENVERWLKELRDHTD----SNIVIMLVGNKADLRHLR-AVSTEDATAFAEREN-TFFMETSALESMNVEN  165 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~----~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~  165 (217)
                      |||++++.|++.+..|+..+.....    ..+|+++|+||+|+.+.+ .++.+++++++...+ ++|+++||++|.|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e  161 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDT  161 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHH
T ss_pred             EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Confidence            9999999999999999998865432    478999999999997653 467888999998886 7899999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027856          166 AFTEVLTQIYRVV  178 (217)
Q Consensus       166 ~~~~i~~~~~~~~  178 (217)
                      +|++|++.++++.
T Consensus       162 ~f~~l~~~~l~~~  174 (175)
T d1ky3a_         162 AFEEIARSALQQN  174 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999888764

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.5e-32  Score=195.56  Aligned_cols=158  Identities=40%  Similarity=0.699  Sum_probs=144.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhh-hhhhhhcCCcEEEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRA-ITSAYYRGAVGALL   91 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~ii~   91 (217)
                      .+||+++|++|||||||+++|+.+.+...+.++.+.........+......+.+||++|...+.. .+..+++++|++++
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il   81 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEE
Confidence            58999999999999999999999999999989998888888888999999999999999877764 56778999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCC---CCCHHHHH
Q 027856           92 VYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALE---SMNVENAF  167 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~~  167 (217)
                      |||++++.|++.+..|+..+.... ..+.|+++|+||.|+.+.+.++.++++++++.++++|+++||++   +.|++++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~F  161 (165)
T d1z06a1          82 VYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIF  161 (165)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHH
T ss_pred             EEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHHH
Confidence            999999999999999999887654 35789999999999988888999999999999999999999987   56999999


Q ss_pred             HHH
Q 027856          168 TEV  170 (217)
Q Consensus       168 ~~i  170 (217)
                      ++|
T Consensus       162 ~~l  164 (165)
T d1z06a1         162 MTL  164 (165)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            886

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-33  Score=200.37  Aligned_cols=163  Identities=31%  Similarity=0.481  Sum_probs=141.3

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      +..+||+|+|++|||||||+++|+.+.+...+.+|.+. .....+..++..+.+.+||++|++.+...+..+++.+|+++
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~-~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCC-EEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceee-ceeeeeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence            56799999999999999999999999999888888764 44566778999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCCCc------------cCCCHHHHHHHHHHcC-CcEEEEe
Q 027856           91 LVYDVTRHVTFENVER-WLKELRDHTDSNIVIMLVGNKADLRHL------------RAVSTEDATAFAEREN-TFFMETS  156 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~S  156 (217)
                      +|||++++.|++.+.. |...+.. ...+.|+++|+||+|+.+.            ......+...+++.++ +.|++||
T Consensus        82 lv~d~~~~~sf~~i~~~~~~~~~~-~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~S  160 (183)
T d1mh1a_          82 ICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (183)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHH-HSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             eeeccchHHHHHHHHHHHHHHHHH-hCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcC
Confidence            9999999999999876 5555544 4468999999999998542            3456777888888877 7899999


Q ss_pred             cCCCCCHHHHHHHHHHHHH
Q 027856          157 ALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       157 a~~~~~i~~~~~~i~~~~~  175 (217)
                      |++|.|++++|+.|++.++
T Consensus       161 Ak~~~~V~e~F~~l~~~il  179 (183)
T d1mh1a_         161 ALTQRGLKTVFDEAIRAVL  179 (183)
T ss_dssp             TTTCTTHHHHHHHHHHHHS
T ss_pred             CCCCcCHHHHHHHHHHHHc
Confidence            9999999999999998874

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.5e-32  Score=196.85  Aligned_cols=163  Identities=28%  Similarity=0.411  Sum_probs=140.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      ..||+++|.+|||||||+++|+.+.+...+.+|.+. .......+++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE-NYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceee-cccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            479999999999999999999999998888888754 4445566788999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC------------ccCCCHHHHHHHHHHcC-CcEEEEecCC
Q 027856           93 YDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRH------------LRAVSTEDATAFAEREN-TFFMETSALE  159 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  159 (217)
                      ||++++.||+.+..|+.........+.|+++|+||+|+..            .+.++.+++..+++..+ ..|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~  160 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ  160 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred             eecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCC
Confidence            9999999999987655444444446899999999999853            34688899999999887 5799999999


Q ss_pred             CCC-HHHHHHHHHHHHHH
Q 027856          160 SMN-VENAFTEVLTQIYR  176 (217)
Q Consensus       160 ~~~-i~~~~~~i~~~~~~  176 (217)
                      |.+ ++++|+.+++.++.
T Consensus       161 ~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         161 SENSVRDIFHVATLACVN  178 (179)
T ss_dssp             BHHHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHhc
Confidence            985 99999999998763

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-31  Score=189.29  Aligned_cols=166  Identities=21%  Similarity=0.332  Sum_probs=138.5

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      -+.+||+++|++|||||||+++|+++.+.... ++.+.. ....+.+++..+.+.+|||+|+..+     .+++.+|++|
T Consensus         3 ~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~-~t~~~~-~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~i   75 (175)
T d2bmja1           3 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLE-KTESEQ-YKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVI   75 (175)
T ss_dssp             CCEEEEEEECCTTTTHHHHHHHHHHSCCCCCC-CSSCEE-EEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEE
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHhCCCCCcC-Ccccee-EEEEeecCceEEEEEEeeccccccc-----ccccccceeE
Confidence            35799999999999999999999999986543 554444 4566778999999999999997654     3678899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhc---CCCCcEEEEEeCCCCCC--ccCCCHHHHHHHHHH-cCCcEEEEecCCCCCHH
Q 027856           91 LVYDVTRHVTFENVERWLKELRDHT---DSNIVIMLVGNKADLRH--LRAVSTEDATAFAER-ENTFFMETSALESMNVE  164 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~---~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~  164 (217)
                      +|||++++.|++.+..|+..+....   ....|+++|+||.|+..  .+.++.++++.++.. +++.|+++||++|.|++
T Consensus        76 lVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~  155 (175)
T d2bmja1          76 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVD  155 (175)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHH
T ss_pred             EEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHH
Confidence            9999999999999999988876543   35679999999888743  456778888888765 56889999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhh
Q 027856          165 NAFTEVLTQIYRVVSRKAL  183 (217)
Q Consensus       165 ~~~~~i~~~~~~~~~~~~~  183 (217)
                      ++|..+++.+...+.++++
T Consensus       156 ~~F~~l~~~i~~~~~~~~l  174 (175)
T d2bmja1         156 RVFQEVAQKVVTLRKQQQL  174 (175)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhccc
Confidence            9999999999988877653

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.97  E-value=8.1e-30  Score=181.07  Aligned_cols=155  Identities=21%  Similarity=0.371  Sum_probs=126.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|++|||||||+++|.++.+...+.+|.+.+...  +..++  +.+.+||+||++.+...+..++..++++++|
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~--~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeee--eeeee--EEEEEeeccccccccccccccccccchhhcc
Confidence            4899999999999999999999999988888887765543  33444  7899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCccCCCHHHHHHHH-----HHcCCcEEEEecCCCCCHHHH
Q 027856           93 YDVTRHVTFENVERWLKELRDH-TDSNIVIMLVGNKADLRHLRAVSTEDATAFA-----ERENTFFMETSALESMNVENA  166 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~  166 (217)
                      ||++++.+++....|+..+... ...+.|+++|+||.|+.+.  ....+..+..     ...++.++++||++|.|+.++
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~  155 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIEKMNLSAIQDREICCYSISCKEKDNIDIT  155 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             cccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchh--hhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHH
Confidence            9999999999888776665443 3468999999999998653  2333332222     223557999999999999999


Q ss_pred             HHHHHHH
Q 027856          167 FTEVLTQ  173 (217)
Q Consensus       167 ~~~i~~~  173 (217)
                      |++|+++
T Consensus       156 ~~~l~~~  162 (164)
T d1zd9a1         156 LQWLIQH  162 (164)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            9999874

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.96  E-value=6.2e-29  Score=176.56  Aligned_cols=156  Identities=20%  Similarity=0.357  Sum_probs=122.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|++|||||||+++|.+..+. .+.+|.+...  ..+...+  +.+.+||+||++.++..+..++..++++++|
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFNI--KTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSSEEE--EEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEeeee--eeccccc--cceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            489999999999999999999988764 4446665443  3344454  7899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHH-HHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHHHH
Q 027856           93 YDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAE-----RENTFFMETSALESMNVENA  166 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~-l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~  166 (217)
                      +|+++..++.....++.. +......+.|+++|+||.|+.+..  ..++......     ..++.++++||++|+|+.++
T Consensus        77 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~  154 (165)
T d1ksha_          77 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPG  154 (165)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             eecccchhHHHHHHhhhhhhhhcccCCCceEEEEecccccccc--CHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHH
Confidence            999999999887665544 443444689999999999997533  3444433322     12456899999999999999


Q ss_pred             HHHHHHHHH
Q 027856          167 FTEVLTQIY  175 (217)
Q Consensus       167 ~~~i~~~~~  175 (217)
                      |++|++.+.
T Consensus       155 ~~~l~~~i~  163 (165)
T d1ksha_         155 IDWLLDDIS  163 (165)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998765

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.96  E-value=2.7e-29  Score=180.30  Aligned_cols=158  Identities=22%  Similarity=0.331  Sum_probs=123.7

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcE
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVG   88 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   88 (217)
                      ..+..+||+++|++|||||||+++|.++.+.... ++.+.+  ...+...+  +.+.+||++|++.+...+..++..+|+
T Consensus        12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~-~~~~~~--~~~i~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~   86 (176)
T d1fzqa_          12 APDQEVRILLLGLDNAGKTTLLKQLASEDISHIT-PTQGFN--IKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDI   86 (176)
T ss_dssp             CCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-EETTEE--EEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSE
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcce-eeeeee--EEEeccCC--eeEeEeeccccccchhHHHHHhhccce
Confidence            3456799999999999999999999998875433 344433  33344444  789999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHHHHH-----HHcCCcEEEEecCCCCC
Q 027856           89 ALLVYDVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDATAFA-----ERENTFFMETSALESMN  162 (217)
Q Consensus        89 ii~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~  162 (217)
                      +++|||++++.++..+..|+..+.... ..++|+++|+||+|+.+..  ...+..+..     ....+.++++||++|+|
T Consensus        87 ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~g  164 (176)
T d1fzqa_          87 LIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALTGEG  164 (176)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTT
T ss_pred             eEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccc--cHHHHHHHHHHHHHHhcCCEEEEEeCCCCCC
Confidence            999999999999999877776665433 3578999999999997632  333333222     22345699999999999


Q ss_pred             HHHHHHHHHHH
Q 027856          163 VENAFTEVLTQ  173 (217)
Q Consensus       163 i~~~~~~i~~~  173 (217)
                      ++++|+||++.
T Consensus       165 v~e~~~~l~~~  175 (176)
T d1fzqa_         165 VQDGMNWVCKN  175 (176)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhc
Confidence            99999999874

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.96  E-value=1.3e-29  Score=183.01  Aligned_cols=161  Identities=19%  Similarity=0.340  Sum_probs=122.8

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEE
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGA   89 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   89 (217)
                      ....+||+++|.+|||||||+++|.+..+.... +|.+...  ......+  +.+.+||++|++.+...+..++..++++
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~-~t~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~i   88 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQIGEVVTTK-PTIGFNV--ETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAV   88 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTCCSEEEEEC-SSTTCCE--EEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCccc-cccceEE--EEEeeCC--EEEEEEecccccccchhHHhhhccceeE
Confidence            455799999999999999999999988765433 5555433  2333344  7899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCccCCCHHHHHHHH-----HHcCCcEEEEecCCCCCH
Q 027856           90 LLVYDVTRHVTFENVERWLKELRD-HTDSNIVIMLVGNKADLRHLRAVSTEDATAFA-----ERENTFFMETSALESMNV  163 (217)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i  163 (217)
                      ++|+|.+++.++.....|+..+.. ....+.|+++|+||+|+.+  ..+..++.+..     ...++.+++|||++|+|+
T Consensus        89 i~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv  166 (182)
T d1moza_          89 IFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG--ALSASEVSKELNLVELKDRSWSIVASSAIKGEGI  166 (182)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT--CCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTH
T ss_pred             EEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeecccc--ccCHHHHHHHHHHHHHhhCCCEEEEEECCCCCCH
Confidence            999999999999888777766543 3345799999999999965  23344443322     233567999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027856          164 ENAFTEVLTQIYRV  177 (217)
Q Consensus       164 ~~~~~~i~~~~~~~  177 (217)
                      +++|++|++.+.+.
T Consensus       167 ~e~~~~l~~~i~~~  180 (182)
T d1moza_         167 TEGLDWLIDVIKEE  180 (182)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc
Confidence            99999999888764

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.96  E-value=2e-29  Score=180.54  Aligned_cols=157  Identities=18%  Similarity=0.379  Sum_probs=121.3

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ...+||+++|.+|||||||+++|..+.+.... +|.+...  .......  +.+.+||+||...+...+..+++.+++++
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~-~t~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~ii   84 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNV--ETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLI   84 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEEEE-EETTEEE--EEEEETT--EEEEEEEESCCGGGHHHHGGGTTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCCcc-ceeeeeE--EEeeccc--eeeEEecCCCcchhhhHHHhhhcccceEE
Confidence            34699999999999999999999988764433 4444332  2333333  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHH-hhcCCCCcEEEEEeCCCCCCccCCCHHHHHHH-----HHHcCCcEEEEecCCCCCHH
Q 027856           91 LVYDVTRHVTFENVERWLKELR-DHTDSNIVIMLVGNKADLRHLRAVSTEDATAF-----AERENTFFMETSALESMNVE  164 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~-~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~  164 (217)
                      +|+|+++..++..+..|+.... .......|+++++||+|+.+.  ....++...     +...++.++++||++|+|+.
T Consensus        85 ~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~  162 (173)
T d1e0sa_          85 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY  162 (173)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEecccchhHHHHHHHHHHHhhhcccccceeeeeeeccccccc--ccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHH
Confidence            9999999999998877666554 344468999999999999652  233333322     22235569999999999999


Q ss_pred             HHHHHHHHHH
Q 027856          165 NAFTEVLTQI  174 (217)
Q Consensus       165 ~~~~~i~~~~  174 (217)
                      ++|++|.+.+
T Consensus       163 e~~~~l~~~~  172 (173)
T d1e0sa_         163 EGLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhc
Confidence            9999998753

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.95  E-value=5.5e-28  Score=170.39  Aligned_cols=154  Identities=17%  Similarity=0.284  Sum_probs=120.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEE
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   93 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   93 (217)
                      +||+++|++|||||||+++|+++.+...+......     ....+...+.+.+||++|...+...+..++..++++++++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN-----VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC-----EEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE-----EEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            68999999999999999999998876655333221     2223445578999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCccCCCHHHHH-----HHHHHcCCcEEEEecCCCCCHHHHH
Q 027856           94 DVTRHVTFENVERWLKELRDHT-DSNIVIMLVGNKADLRHLRAVSTEDAT-----AFAERENTFFMETSALESMNVENAF  167 (217)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~~i~~~~  167 (217)
                      |..++.++..+..|+..+.... ....|+++++||.|+.+..  ...+..     .++...++.++++||++|+|++++|
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~  153 (160)
T d1r8sa_          76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (160)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             EecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccc--cHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHH
Confidence            9999999998877776665433 3578999999999987532  222222     2233356779999999999999999


Q ss_pred             HHHHHHH
Q 027856          168 TEVLTQI  174 (217)
Q Consensus       168 ~~i~~~~  174 (217)
                      ++|++++
T Consensus       154 ~~l~~~l  160 (160)
T d1r8sa_         154 DWLSNQL  160 (160)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhcC
Confidence            9998763

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.92  E-value=1.4e-24  Score=155.31  Aligned_cols=156  Identities=21%  Similarity=0.336  Sum_probs=115.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..+||+|+|.+|||||||+++|.+..+.... ++.+..  .......+  +.+.+||+++.+.....+..++..++++++
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~-~~~~~~--~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~   88 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV   88 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCEEEE-CCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCccc-ccccee--EEEEeecc--eEEEEeccccccccccchhhhhccceeeee
Confidence            4589999999999999999999998875433 232222  22233333  688999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHH-----HcCCcEEEEecCCCCCHHH
Q 027856           92 VYDVTRHVTFENVERWLKELRD-HTDSNIVIMLVGNKADLRHLRAVSTEDATAFAE-----RENTFFMETSALESMNVEN  165 (217)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~  165 (217)
                      ++|.++..++.....++..... ......|+++|+||.|+....  ...+......     ..++.++++||++|+|+++
T Consensus        89 v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e  166 (177)
T d1zj6a1          89 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM--TVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQ  166 (177)
T ss_dssp             EEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred             ecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccC--cHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHH
Confidence            9999999998877654444433 333689999999999986532  3333333322     2346799999999999999


Q ss_pred             HHHHHHHHH
Q 027856          166 AFTEVLTQI  174 (217)
Q Consensus       166 ~~~~i~~~~  174 (217)
                      +|++|.+++
T Consensus       167 ~~~~L~~~l  175 (177)
T d1zj6a1         167 GLEWMMSRL  175 (177)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999875

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=6.1e-25  Score=157.62  Aligned_cols=154  Identities=21%  Similarity=0.176  Sum_probs=107.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCC-cccceeEeEEEEEEECCeEEEEEEEeCCChh--------hhhhhhhhhhc
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLES-KSTIGVEFATRSIRCDDKIVKAQIWDTAGQE--------RYRAITSAYYR   84 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~~~~~~~~~   84 (217)
                      -.|+|+|.+|||||||+++|++....... .+..+...........+  ..+.+|||||..        .+.......+.
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~   83 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEALA   83 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccccccchhcccccccccc
Confidence            36999999999999999999998754322 22222333333334444  578999999952        23333445678


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcC-CcEEEEecCCCCCH
Q 027856           85 GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAEREN-TFFMETSALESMNV  163 (217)
Q Consensus        85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i  163 (217)
                      .+|++++|+|++++.+... ..|...+... ..+.|+++|+||+|+....   .+....+....+ ..++++||++|.|+
T Consensus        84 ~ad~il~v~D~~~~~~~~~-~~i~~~l~~~-~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~iSA~~~~gi  158 (178)
T d1wf3a1          84 DVNAVVWVVDLRHPPTPED-ELVARALKPL-VGKVPILLVGNKLDAAKYP---EEAMKAYHELLPEAEPRMLSALDERQV  158 (178)
T ss_dssp             SCSEEEEEEETTSCCCHHH-HHHHHHHGGG-TTTSCEEEEEECGGGCSSH---HHHHHHHHHTSTTSEEEECCTTCHHHH
T ss_pred             cccceeeeechhhhhcccc-cchhhheecc-ccchhhhhhhcccccccCH---HHHHHHHHhhcccCceEEEecCCCCCH
Confidence            9999999999988755432 3455555443 3478999999999986522   222344444444 56899999999999


Q ss_pred             HHHHHHHHHHH
Q 027856          164 ENAFTEVLTQI  174 (217)
Q Consensus       164 ~~~~~~i~~~~  174 (217)
                      ++++++|++.+
T Consensus       159 ~~L~~~i~~~l  169 (178)
T d1wf3a1         159 AELKADLLALM  169 (178)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHHhC
Confidence            99999998644

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.92  E-value=2.5e-24  Score=152.53  Aligned_cols=156  Identities=18%  Similarity=0.329  Sum_probs=119.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|.+|||||||+++|+++.+.... ++.+..  ......++  +.+.+||.++...........+...++++++
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~~~~~~~~-~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIGFN--VETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYV   79 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSSCCCCC-CCSSEE--EEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccee-ccccee--eeeeccCc--eEEEEeeccccccccccchhhhhhhhhhhhh
Confidence            489999999999999999999999876543 443322  23333344  6889999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHH-HHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHH-----HHHHHcCCcEEEEecCCCCCHHHH
Q 027856           93 YDVTRHVTFENVERW-LKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAT-----AFAERENTFFMETSALESMNVENA  166 (217)
Q Consensus        93 ~d~~~~~s~~~~~~~-~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~~i~~~  166 (217)
                      +|..+..++.....+ ...+........|+++++||.|+.+..  ...+..     .++...+++++++||++|.|++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~  157 (169)
T d1upta_          80 VDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM--TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEA  157 (169)
T ss_dssp             EETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHH
T ss_pred             hhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccc--cHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHH
Confidence            999988887776554 444444444678999999999997632  222222     223345677999999999999999


Q ss_pred             HHHHHHHHH
Q 027856          167 FTEVLTQIY  175 (217)
Q Consensus       167 ~~~i~~~~~  175 (217)
                      |++|++.+.
T Consensus       158 ~~~l~~~l~  166 (169)
T d1upta_         158 MEWLVETLK  166 (169)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988663

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=9.9e-24  Score=148.72  Aligned_cols=151  Identities=18%  Similarity=0.240  Sum_probs=116.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEE
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   94 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d   94 (217)
                      ||+++|++|||||||+++|.++.+.. ..++.+....  ..  ........+||++|...+...+..++..++++++++|
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~-~~~t~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTSE--EL--AIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC-CCCCCSCEEE--EE--CCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCe-eeceeeEeEE--Ee--ccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence            79999999999999999999998754 3455543332  22  2233578999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHH------------HcCCcEEEEecCCCC
Q 027856           95 VTRHVTFENVERWLKELRD-HTDSNIVIMLVGNKADLRHLRAVSTEDATAFAE------------RENTFFMETSALESM  161 (217)
Q Consensus        95 ~~~~~s~~~~~~~~~~l~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------------~~~~~~~~~Sa~~~~  161 (217)
                      .++..++.....++..... ....+.|++++++|.|+..  .....+......            ..++.++++||++|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  154 (166)
T d2qtvb1          77 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRN  154 (166)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSS--CCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTB
T ss_pred             ccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccc--cCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCC
Confidence            9999988877665555544 3346789999999999865  334444433321            123459999999999


Q ss_pred             CHHHHHHHHHH
Q 027856          162 NVENAFTEVLT  172 (217)
Q Consensus       162 ~i~~~~~~i~~  172 (217)
                      |++++|+||.+
T Consensus       155 Gv~e~~~~l~~  165 (166)
T d2qtvb1         155 GYLEAFQWLSQ  165 (166)
T ss_dssp             SHHHHHHHHTT
T ss_pred             CHHHHHHHHhC
Confidence            99999999864

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=5e-25  Score=155.48  Aligned_cols=150  Identities=22%  Similarity=0.222  Sum_probs=108.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCC-CcccceeEeEEEEEEECCeEEEEEEEeCCChhh--------hhhhhhhhhc
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLE-SKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER--------YRAITSAYYR   84 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~~   84 (217)
                      ++|+++|.+|||||||+|+|++...... ..+..+.+.....+...+  ..+.+||+||...        .......++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHHH
Confidence            7999999999999999999998876532 223333333333444455  5788999999321        1233445678


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHH
Q 027856           85 GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVE  164 (217)
Q Consensus        85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  164 (217)
                      .+|++++++|..+..+.+....|...+... ..+.|+++|+||+|+......       +.+..+.+++++||++|.|++
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~iilv~NK~Dl~~~~~~-------~~~~~~~~~~~iSAk~~~gi~  151 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEIWPEFIARL-PAKLPITVVRNKADITGETLG-------MSEVNGHALIRLSARTGEGVD  151 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHHS-CTTCCEEEEEECHHHHCCCCE-------EEEETTEEEEECCTTTCTTHH
T ss_pred             hccccceeeccccccchhhhhhhhhhhhhc-ccccceeeccchhhhhhhHHH-------HHHhCCCcEEEEECCCCCCHH
Confidence            999999999999888776666665555444 347899999999998653221       111235679999999999999


Q ss_pred             HHHHHHHHH
Q 027856          165 NAFTEVLTQ  173 (217)
Q Consensus       165 ~~~~~i~~~  173 (217)
                      +++++|.+.
T Consensus       152 ~L~~~l~~~  160 (161)
T d2gj8a1         152 VLRNHLKQS  160 (161)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999999875

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=4.4e-24  Score=154.89  Aligned_cols=155  Identities=18%  Similarity=0.226  Sum_probs=115.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|..|||||||+++|....++..+     .  ....+...  .+.+.+||++|++.+...+..++..++++++|
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~t~~-----~--~~~~~~~~--~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v   72 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEAGTG-----I--VETHFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFC   72 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSCCCS-----E--EEEEEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCcc-----E--EEEEEEee--eeeeeeeccccccccccchhhcccCCceeeeE
Confidence            589999999999999999999987765433     2  12233333  47899999999999999999999999999999


Q ss_pred             EECCChhhH-----------HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCc---------------cCCCHHHHHHHH-
Q 027856           93 YDVTRHVTF-----------ENVERWLKELRDHTDSNIVIMLVGNKADLRHL---------------RAVSTEDATAFA-  145 (217)
Q Consensus        93 ~d~~~~~s~-----------~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~---------------~~~~~~~~~~~~-  145 (217)
                      +|.++..++           +....|...+........|+++++||.|+...               ......+..... 
T Consensus        73 ~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (195)
T d1svsa1          73 VALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQ  152 (195)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHH
T ss_pred             EeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHH
Confidence            999887654           33345666666666678999999999996321               112223322211 


Q ss_pred             ----HH------cCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 027856          146 ----ER------ENTFFMETSALESMNVENAFTEVLTQIYR  176 (217)
Q Consensus       146 ----~~------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  176 (217)
                          ..      ..+.++++||++|.|++++|+.+.+.+++
T Consensus       153 ~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~  193 (195)
T d1svsa1         153 CQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  193 (195)
T ss_dssp             HHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHh
Confidence                11      23457799999999999999999887764

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=1.5e-23  Score=150.49  Aligned_cols=157  Identities=17%  Similarity=0.093  Sum_probs=106.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhh-------hhhhhhhhhcCCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER-------YRAITSAYYRGAV   87 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~~d   87 (217)
                      +|+++|.+|||||||+|+|++...........+........ .......+.+|||||...       ........+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVV-EVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEE-ECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeecee-eecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            59999999999999999999877654443333333333322 333335789999999322       1122334567899


Q ss_pred             EEEEEEECCChh--hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHH
Q 027856           88 GALLVYDVTRHV--TFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVEN  165 (217)
Q Consensus        88 ~ii~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  165 (217)
                      ++++++|.....  +......++...... ..++|+++|+||+|+...+.  .++..+.....+.+++++||++|+|+++
T Consensus        82 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~NK~D~~~~~~--~~~~~~~~~~~~~~~~~iSA~tg~gid~  158 (180)
T d1udxa2          82 VLLYVLDAADEPLKTLETLRKEVGAYDPA-LLRRPSLVALNKVDLLEEEA--VKALADALAREGLAVLPVSALTGAGLPA  158 (180)
T ss_dssp             EEEEEEETTSCHHHHHHHHHHHHHHHCHH-HHHSCEEEEEECCTTSCHHH--HHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred             hhhhhcccccccccchhhhhhhhhccccc-cchhhhhhhhhhhhhhhHHH--HHHHHHHHHhcCCeEEEEEcCCCCCHHH
Confidence            999999986542  222233333332211 12579999999999976432  3445556666788999999999999999


Q ss_pred             HHHHHHHHHH
Q 027856          166 AFTEVLTQIY  175 (217)
Q Consensus       166 ~~~~i~~~~~  175 (217)
                      +++.|.+.+.
T Consensus       159 L~~~i~~~l~  168 (180)
T d1udxa2         159 LKEALHALVR  168 (180)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999887764

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=1.5e-24  Score=158.09  Aligned_cols=159  Identities=19%  Similarity=0.184  Sum_probs=123.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|..|||||||+++|....+.  +.||.|.+..  .+  ....+.+.+||++|++.+...+..++..+++++++
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~~--~~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   75 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEY--PF--DLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFL   75 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEEE--EE--ECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEEE--EE--eccceeeeeccccccccccccccccccccceeeEe
Confidence            589999999999999999999988864  5678876543  23  23447899999999999999999999999999999


Q ss_pred             EECCChh-----------hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCcc----------------CCCHHHHHHHH
Q 027856           93 YDVTRHV-----------TFENVERWLKELRDHTDSNIVIMLVGNKADLRHLR----------------AVSTEDATAFA  145 (217)
Q Consensus        93 ~d~~~~~-----------s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~----------------~~~~~~~~~~~  145 (217)
                      +|.++..           .++....|...+......+.|+++++||.|+...+                .........+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  155 (200)
T d2bcjq2          76 VALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFI  155 (200)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHH
T ss_pred             eeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHH
Confidence            9998754           34556778888877766789999999999984321                12233333332


Q ss_pred             HH----------cCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027856          146 ER----------ENTFFMETSALESMNVENAFTEVLTQIYRV  177 (217)
Q Consensus       146 ~~----------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  177 (217)
                      ..          ..+.++++||++|+|+.++|+.+.+.+.+.
T Consensus       156 ~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~  197 (200)
T d2bcjq2         156 LKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  197 (200)
T ss_dssp             HHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHH
Confidence            21          234478999999999999999998887754

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=5.7e-24  Score=151.52  Aligned_cols=156  Identities=21%  Similarity=0.231  Sum_probs=100.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh---------hhhhhhhhhhhcC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ---------ERYRAITSAYYRG   85 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~---------~~~~~~~~~~~~~   85 (217)
                      .|+++|.+|||||||+++|++....... ...+.+.......++.....+.+||++|.         ..+......++..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~   80 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVE-DEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE   80 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceec-ccCceeeccccccccccccccccccccceeeeecccccccccccccccccc
Confidence            6899999999999999999987654322 11122222222223333367899999993         1223344556789


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHH
Q 027856           86 AVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVEN  165 (217)
Q Consensus        86 ~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  165 (217)
                      +|+++++++.+....... ..++..+...   ++|+++|+||+|+.+..  ..+...++.......++++||++|.|+++
T Consensus        81 ad~i~~~~~~~~~~~~~~-~~~~~~l~~~---~~pviiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~i~iSAk~g~gid~  154 (171)
T d1mkya1          81 ADLVLFVVDGKRGITKED-ESLADFLRKS---TVDTILVANKAENLREF--EREVKPELYSLGFGEPIPVSAEHNINLDT  154 (171)
T ss_dssp             CSEEEEEEETTTCCCHHH-HHHHHHHHHH---TCCEEEEEESCCSHHHH--HHHTHHHHGGGSSCSCEECBTTTTBSHHH
T ss_pred             CcEEEEeecccccccccc-cccccccccc---cccccccchhhhhhhhh--hhHHHHHHHhcCCCCeEEEecCCCCCHHH
Confidence            999999999887655433 3455555543   78999999999986421  12222233333345689999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027856          166 AFTEVLTQIYRV  177 (217)
Q Consensus       166 ~~~~i~~~~~~~  177 (217)
                      ++++|++.+.+.
T Consensus       155 L~~~i~~~l~e~  166 (171)
T d1mkya1         155 MLETIIKKLEEK  166 (171)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCC
Confidence            999999877654

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.90  E-value=4.9e-23  Score=147.66  Aligned_cols=159  Identities=16%  Similarity=0.145  Sum_probs=106.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccc-----eeEeE--EEEEEECCeEEEEEEEeCCChhhhhhhhhhhhc
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTI-----GVEFA--TRSIRCDDKIVKAQIWDTAGQERYRAITSAYYR   84 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   84 (217)
                      ..++|+++|++|+|||||+|+|++.........+.     +....  ...+...+  ..+.++|+||+..+.......+.
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~l~   81 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAAD   81 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTT
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCC--ccccccccccccccccchhhhhh
Confidence            45799999999999999999999754322221111     11111  11122233  57889999999999888888899


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCH--HHHHHHHHH----cCCcEEEEecC
Q 027856           85 GAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVST--EDATAFAER----ENTFFMETSAL  158 (217)
Q Consensus        85 ~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~~----~~~~~~~~Sa~  158 (217)
                      .+|++++++|+++....+..+ .+..+..   .++|+++|+||+|+...+....  +..+.....    .+.+++++||+
T Consensus        82 ~~d~~ilv~d~~~g~~~~~~~-~~~~~~~---~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~  157 (179)
T d1wb1a4          82 IIDLALIVVDAKEGPKTQTGE-HMLILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAK  157 (179)
T ss_dssp             SCCEEEEEEETTTCSCHHHHH-HHHHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTT
T ss_pred             hccccccccccccccchhhhh-hhhhhhh---cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcc
Confidence            999999999999865443322 2233333   3789999999999876332111  111222222    24579999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 027856          159 ESMNVENAFTEVLTQIYR  176 (217)
Q Consensus       159 ~~~~i~~~~~~i~~~~~~  176 (217)
                      +|+|++++++.|++.+.+
T Consensus       158 ~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         158 TGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHhcCCc
Confidence            999999999999877654

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.89  E-value=1.1e-22  Score=146.08  Aligned_cols=156  Identities=19%  Similarity=0.251  Sum_probs=111.7

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   90 (217)
                      ....||+++|.+|||||||+++|.+..+.... ++.+.+..  .+.+++  ..+.+||+.+...+...+..++...++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~-~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-PTLHPTSE--ELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   85 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCE--EEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccee-ccccccee--EEEecc--cccccccccchhhhhhHHhhhhcccceee
Confidence            34689999999999999999999998876543 44433332  334455  47789999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHH-HHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH-----------------cCCcE
Q 027856           91 LVYDVTRHVTFENVERWLKE-LRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAER-----------------ENTFF  152 (217)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~-l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~  152 (217)
                      +++|.++...+.....++.. .......+.|+++++||.|+..  .....+..+....                 .+..+
T Consensus        86 ~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (186)
T d1f6ba_          86 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  163 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             eeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccc--cCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEE
Confidence            99999999888776553333 3334446899999999999865  3344444443322                 13458


Q ss_pred             EEEecCCCCCHHHHHHHHHHH
Q 027856          153 METSALESMNVENAFTEVLTQ  173 (217)
Q Consensus       153 ~~~Sa~~~~~i~~~~~~i~~~  173 (217)
                      +++||++|+|++++|+||++.
T Consensus       164 ~~~SA~tg~Gi~e~~~~l~~~  184 (186)
T d1f6ba_         164 FMCSVLKRQGYGEGFRWMAQY  184 (186)
T ss_dssp             EECBTTTTBSHHHHHHHHHTT
T ss_pred             EEEeCCCCCCHHHHHHHHHHh
Confidence            999999999999999999865

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=3.9e-22  Score=143.72  Aligned_cols=162  Identities=21%  Similarity=0.183  Sum_probs=107.6

Q ss_pred             CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCC-CCcccceeEeEEEEEEECCeEEEEEEEeCCChhhh-----------
Q 027856            8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY-----------   75 (217)
Q Consensus         8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----------   75 (217)
                      ++....+||+++|++|+|||||+|+|++..... ...+..+.......+..++  ..+.++|+||....           
T Consensus         3 p~~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~   80 (186)
T d1mkya2           3 PEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKY   80 (186)
T ss_dssp             CCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--EEEEESSCSCC-----------CCS
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCC--ceeeeeccCCccccccccccccccc
Confidence            334457999999999999999999999876532 2222222333333455565  46789999994321           


Q ss_pred             -hhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH-----cC
Q 027856           76 -RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAER-----EN  149 (217)
Q Consensus        76 -~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~  149 (217)
                       .......+..+|++++|+|++.+...+. ..+...+...   +.|+++|+||+|+.........+..+....     ..
T Consensus        81 ~~~~~~~~~~~~dvii~v~d~~~~~~~~~-~~~~~~~~~~---~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  156 (186)
T d1mkya2          81 SNYRVVDSIEKADVVVIVLDATQGITRQD-QRMAGLMERR---GRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDY  156 (186)
T ss_dssp             CCHHHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHHT---TCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTT
T ss_pred             hhHHHHHHHhcCCEEEEeecccccchhhH-HHHHHHHHHc---CCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCC
Confidence             2233445678999999999987654322 3344444443   789999999999876555445555444333     23


Q ss_pred             CcEEEEecCCCCCHHHHHHHHHHHHH
Q 027856          150 TFFMETSALESMNVENAFTEVLTQIY  175 (217)
Q Consensus       150 ~~~~~~Sa~~~~~i~~~~~~i~~~~~  175 (217)
                      .+++++||++|.|+++++++|.+.+.
T Consensus       157 ~~i~~vSa~~g~gv~~L~~~i~~~~~  182 (186)
T d1mkya2         157 SPLIFTSADKGWNIDRMIDAMNLAYA  182 (186)
T ss_dssp             SCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            56999999999999999999965443

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=3.5e-23  Score=145.68  Aligned_cols=149  Identities=21%  Similarity=0.257  Sum_probs=101.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCC-CcccceeEeEEEEEEECCeEEEEEEEeCCChhh--------h-hhhhhhhh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLE-SKSTIGVEFATRSIRCDDKIVKAQIWDTAGQER--------Y-RAITSAYY   83 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~-~~~~~~~~   83 (217)
                      +||+++|.+|+|||||+|+|++...... ..+..+.......+...+  ..+.+|||||...        + .......+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            6999999999999999999998765432 222222333333444455  5788999999321        1 11223346


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCH
Q 027856           84 RGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNV  163 (217)
Q Consensus        84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  163 (217)
                      ..+|++++|+|++++...+....+ ..+     ...++++++||.|+.+.  ...++... ....+.+++++||++|.|+
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~~-~~~-----~~~~~i~~~~k~d~~~~--~~~~~~~~-~~~~~~~~~~vSA~~g~gi  149 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKIL-ERI-----KNKRYLVVINKVDVVEK--INEEEIKN-KLGTDRHMVKISALKGEGL  149 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHHH-HHH-----TTSSEEEEEEECSSCCC--CCHHHHHH-HHTCSTTEEEEEGGGTCCH
T ss_pred             HhCCEEEEEEeCCCCcchhhhhhh-hhc-----ccccceeeeeeccccch--hhhHHHHH-HhCCCCcEEEEECCCCCCH
Confidence            789999999999988765443222 222     26789999999999763  23333332 2234567999999999999


Q ss_pred             HHHHHHHHHH
Q 027856          164 ENAFTEVLTQ  173 (217)
Q Consensus       164 ~~~~~~i~~~  173 (217)
                      ++++++|.+.
T Consensus       150 ~~L~~~I~ke  159 (160)
T d1xzpa2         150 EKLEESIYRE  159 (160)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999998753

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.88  E-value=1.9e-22  Score=145.07  Aligned_cols=150  Identities=21%  Similarity=0.209  Sum_probs=97.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh-----------h----hhhhhh
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ-----------E----RYRAIT   79 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-----------~----~~~~~~   79 (217)
                      .|+++|.+|||||||+|+|++........+..+  .....+...+    +.+|||||.           +    .+....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T--~~~~~~~~~~----~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVT--RKIIEIEWKN----HKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCT--TSCEEEEETT----EEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEe--eccccccccc----ceecccCCceeccccccccccccchhhhhhh
Confidence            589999999999999999999876543333222  2233333333    568999993           1    112223


Q ss_pred             hhhhcCCcEEEEEEECCChhhHHHH----------HHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHc-
Q 027856           80 SAYYRGAVGALLVYDVTRHVTFENV----------ERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERE-  148 (217)
Q Consensus        80 ~~~~~~~d~ii~v~d~~~~~s~~~~----------~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-  148 (217)
                      ...++.+|++++|+|+.........          ..++..+..   .+.|+++|+||+|+....+.   ....+.... 
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~---~~~p~iiv~NK~D~~~~~~~---~~~~~~~~~~  149 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKNVQE---VINFLAEKFE  149 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSCHHH---HHHHHHHHHT
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH---cCCCEEEEEeeeehhhhHHH---HHHHHHHHhc
Confidence            3456789999999998764322111          122333333   37899999999998653221   112222221 


Q ss_pred             ------CCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 027856          149 ------NTFFMETSALESMNVENAFTEVLTQIYR  176 (217)
Q Consensus       149 ------~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  176 (217)
                            ...++++||++|.|++++++.|.+.+.+
T Consensus       150 ~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         150 VPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             CCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence                  2238999999999999999999988765

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=1.7e-22  Score=147.15  Aligned_cols=158  Identities=20%  Similarity=0.277  Sum_probs=109.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEE
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLV   92 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   92 (217)
                      .+||+++|.+|||||||+++|.   +...+.+|.|...  ..+....  +.+.+||++|++.+...+..+++.+++++++
T Consensus         2 ~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~--~~~~~~~--~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHE--YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEE--EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEE--EEEeeee--eeeeeecccceeeecccccccccccceeEEE
Confidence            5899999999999999999993   4556778888543  3344444  7899999999999999999999999999999


Q ss_pred             EECCChhh----------HHHHHHHHHH-HHhhcCCCCcEEEEEeCCCCCCcc----------------CCCHHHHHHHH
Q 027856           93 YDVTRHVT----------FENVERWLKE-LRDHTDSNIVIMLVGNKADLRHLR----------------AVSTEDATAFA  145 (217)
Q Consensus        93 ~d~~~~~s----------~~~~~~~~~~-l~~~~~~~~p~ivv~nK~D~~~~~----------------~~~~~~~~~~~  145 (217)
                      +|.++..+          ++....++.. +......+.|+++++||.|+.++.                .-..+.+.++.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  154 (200)
T d1zcba2          75 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFL  154 (200)
T ss_dssp             EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHH
T ss_pred             EEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHH
Confidence            99987532          3333333333 444444689999999999984311                11233333332


Q ss_pred             HH-----------cCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027856          146 ER-----------ENTFFMETSALESMNVENAFTEVLTQIYRV  177 (217)
Q Consensus       146 ~~-----------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  177 (217)
                      ..           ..+.++++||+++.|++++|+.+.+.+.+.
T Consensus       155 ~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~  197 (200)
T d1zcba2         155 VECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD  197 (200)
T ss_dssp             HHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHH
Confidence            22           124577899999999999999988777654

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.87  E-value=4.4e-22  Score=147.80  Aligned_cols=161  Identities=17%  Similarity=0.181  Sum_probs=104.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEE----------------ECCeEEEEEEEeCCChhhhhhh
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIR----------------CDDKIVKAQIWDTAGQERYRAI   78 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~l~Dt~G~~~~~~~   78 (217)
                      .|+|+|++++|||||+++|++...........+.........                +......+.++||||+..|...
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~   86 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTL   86 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTS
T ss_pred             EEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceeccccc
Confidence            399999999999999999998643221111111111111111                1223357899999999988888


Q ss_pred             hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCC-------------H-------
Q 027856           79 TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS-------------T-------  138 (217)
Q Consensus        79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~-------------~-------  138 (217)
                      ....+..+|++|+|+|+.+.-..+. ...+..+...   ++|+++|+||+|+.......             .       
T Consensus        87 ~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~---~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  162 (227)
T d1g7sa4          87 RKRGGALADLAILIVDINEGFKPQT-QEALNILRMY---RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLD  162 (227)
T ss_dssp             BCSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHHHT---TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHH
T ss_pred             chhcccccceEEEEEecccCcccch-hHHHHHhhcC---CCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHH
Confidence            7778899999999999987655443 2333444433   78999999999986532111             0       


Q ss_pred             HHHHHHHH---H---------------cCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 027856          139 EDATAFAE---R---------------ENTFFMETSALESMNVENAFTEVLTQIYRVVS  179 (217)
Q Consensus       139 ~~~~~~~~---~---------------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  179 (217)
                      ....+...   .               ..++++++||.+|.|++++++.|.....+...
T Consensus       163 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~~~  221 (227)
T d1g7sa4         163 TKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLR  221 (227)
T ss_dssp             HHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            00001111   0               01358999999999999999998876655443

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.86  E-value=4.7e-22  Score=143.18  Aligned_cols=157  Identities=18%  Similarity=0.101  Sum_probs=101.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhh-------hhhhhcCC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAI-------TSAYYRGA   86 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~~~~~   86 (217)
                      .+|+++|.+|||||||+|+|++........+..+.+.......+.+. ..+.+|||||.......       ....+..+
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~-~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT   80 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCC-cEEEEecCCCcccCchHHHHHHHHHHHHHHHh
Confidence            36999999999999999999987765444344444443444444332 36789999995322211       12234568


Q ss_pred             cEEEEEEECCChhhHHHH---H--HHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH--cCCcEEEEecCC
Q 027856           87 VGALLVYDVTRHVTFENV---E--RWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAER--ENTFFMETSALE  159 (217)
Q Consensus        87 d~ii~v~d~~~~~s~~~~---~--~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~  159 (217)
                      +.++++++..........   .  ............++|+++|+||+|+.+.    .+..+.+...  .+.+++.+||++
T Consensus        81 ~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~----~~~~~~~~~~~~~~~~v~~iSA~~  156 (185)
T d1lnza2          81 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA----AENLEAFKEKLTDDYPVFPISAVT  156 (185)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH----HHHHHHHHHHCCSCCCBCCCSSCC
T ss_pred             hhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhH----HHHHHHHHHHhccCCcEEEEECCC
Confidence            889888887654322111   1  1122222222246899999999998653    2233334443  357799999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 027856          160 SMNVENAFTEVLTQIY  175 (217)
Q Consensus       160 ~~~i~~~~~~i~~~~~  175 (217)
                      |.|++++++.|.+.+.
T Consensus       157 g~Gi~~L~~~i~~~L~  172 (185)
T d1lnza2         157 REGLRELLFEVANQLE  172 (185)
T ss_dssp             SSTTHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHhhh
Confidence            9999999999987653

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.86  E-value=1e-20  Score=137.20  Aligned_cols=158  Identities=16%  Similarity=0.146  Sum_probs=96.3

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCCh----------h---hh
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQ----------E---RY   75 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~---~~   75 (217)
                      +....++|+|+|.+|||||||+|+|++...........+.+..........   .+.+.|+++.          +   .+
T Consensus        19 p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~   95 (195)
T d1svia_          19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRM   95 (195)
T ss_dssp             CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhhhH
Confidence            444556999999999999999999998654322223233333333333333   3345666661          1   11


Q ss_pred             hhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH----cCCc
Q 027856           76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAER----ENTF  151 (217)
Q Consensus        76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~~~  151 (217)
                      .......+..++++++++|++.+..... ..+++.+...   ++|+++|+||+|+...... .+....+.+.    .+.+
T Consensus        96 ~~~~~~~~~~~~~vi~viD~~~~~~~~~-~~~~~~l~~~---~~piivv~NK~D~~~~~~~-~~~~~~~~~~l~~~~~~~  170 (195)
T d1svia_          96 IETYITTREELKAVVQIVDLRHAPSNDD-VQMYEFLKYY---GIPVIVIATKADKIPKGKW-DKHAKVVRQTLNIDPEDE  170 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHHT---TCCEEEEEECGGGSCGGGH-HHHHHHHHHHHTCCTTSE
T ss_pred             Hhhhhccccchhhhhhhhhccccccccc-cccccccccc---cCcceechhhccccCHHHH-HHHHHHHHHHhcccCCCC
Confidence            1222344567899999999987644222 3455555543   7899999999998653322 1222222222    3456


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHH
Q 027856          152 FMETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       152 ~~~~Sa~~~~~i~~~~~~i~~~~  174 (217)
                      ++++||++|.|+++++++|.+.+
T Consensus       171 ~~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         171 LILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHh
Confidence            99999999999999999998765

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=3.2e-20  Score=135.77  Aligned_cols=116  Identities=18%  Similarity=0.285  Sum_probs=86.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhh-hhhhhhhcCCcEEEEEE
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYR-AITSAYYRGAVGALLVY   93 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~d~ii~v~   93 (217)
                      +|+++|++|||||||+++|+++.+...+ ++.+.+.....+. ++..+.+.+||++|++.+. ..+..++..++++++|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVN-NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEECS-STTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEEEEEEe-eeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            6999999999999999999998876654 5555544433332 4455789999999998876 46778889999999999


Q ss_pred             ECCChhhH-HHHHHH-HHHHHh--hcCCCCcEEEEEeCCCCCC
Q 027856           94 DVTRHVTF-ENVERW-LKELRD--HTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        94 d~~~~~s~-~~~~~~-~~~l~~--~~~~~~p~ivv~nK~D~~~  132 (217)
                      |+++..+. .....+ +..+..  .....+|++||+||+|+..
T Consensus        80 D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~  122 (207)
T d2fh5b1          80 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM  122 (207)
T ss_dssp             ETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred             EcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCC
Confidence            99987653 333333 333322  2234689999999999975

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.85  E-value=2.2e-20  Score=135.47  Aligned_cols=162  Identities=21%  Similarity=0.205  Sum_probs=106.2

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCC-----cccceeEeEEEEEEE-------------------CCeEEEEEE
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLES-----KSTIGVEFATRSIRC-------------------DDKIVKAQI   66 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~-----~~~~~~~~~~~~~~~-------------------~~~~~~~~l   66 (217)
                      +..++|+++|+.++|||||+++|++.......     ..+....+.......                   ......+.+
T Consensus         3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (195)
T d1kk1a3           3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   82 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence            56789999999999999999999975322211     111111111111110                   122357899


Q ss_pred             EeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC--CHHHHHHH
Q 027856           67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV--STEDATAF  144 (217)
Q Consensus        67 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~  144 (217)
                      +||||+..|.......+..+|++++|+|+.+..........+..+....  ..+++++.||+|+.+....  ..+...++
T Consensus        83 iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~--~~~iiv~inK~D~~d~~~~~~~~~~~~~~  160 (195)
T d1kk1a3          83 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKIELVDKEKALENYRQIKEF  160 (195)
T ss_dssp             EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred             eccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhc--CccceeeeecccchhhHHHHHHHHHHHHH
Confidence            9999999999888888899999999999988642222233333333331  3457889999998763221  12223333


Q ss_pred             HHHc---CCcEEEEecCCCCCHHHHHHHHHHHH
Q 027856          145 AERE---NTFFMETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       145 ~~~~---~~~~~~~Sa~~~~~i~~~~~~i~~~~  174 (217)
                      ....   .++++++||++|+|++++++.|.+.+
T Consensus       161 ~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         161 IEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             hccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            3332   35799999999999999999887653

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.84  E-value=4.2e-21  Score=141.95  Aligned_cols=159  Identities=18%  Similarity=0.225  Sum_probs=115.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEE
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALL   91 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (217)
                      ..+||+++|..|||||||+++|....+    .+|.|..  ...+.+++  +.+.+||++|++.++..|..++..++++++
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~--~~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~   76 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIF--ETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIF   76 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCE--EEEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEEE
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCeE--EEEEEECc--EEEEEEecCccceeccchhhhcccccceEE
Confidence            468999999999999999999976653    3566644  33444555  789999999999999999999999999999


Q ss_pred             EEECCChh-----------hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccC----C--------------------
Q 027856           92 VYDVTRHV-----------TFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRA----V--------------------  136 (217)
Q Consensus        92 v~d~~~~~-----------s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~----~--------------------  136 (217)
                      ++|.++..           ..+....|...+......++|++|++||+|+.+++.    .                    
T Consensus        77 v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~  156 (221)
T d1azta2          77 VVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATP  156 (221)
T ss_dssp             EEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCC
T ss_pred             EEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccc
Confidence            99998643           122233455555554446899999999999853210    0                    


Q ss_pred             ------CHHHHHHHH-----HH--------cCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 027856          137 ------STEDATAFA-----ER--------ENTFFMETSALESMNVENAFTEVLTQIYRVV  178 (217)
Q Consensus       137 ------~~~~~~~~~-----~~--------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  178 (217)
                            ...++..+.     +.        ..+..+++||.++.+++.+|+.+.+.+.+..
T Consensus       157 ~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~~  217 (221)
T d1azta2         157 EPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMH  217 (221)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             cCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHHH
Confidence                  122232222     11        1233678999999999999999887777553

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.84  E-value=9.7e-20  Score=133.01  Aligned_cols=163  Identities=19%  Similarity=0.184  Sum_probs=102.8

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCc-----ccceeEeEEEEEEE------------------------CCe
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESK-----STIGVEFATRSIRC------------------------DDK   60 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~-----~~~~~~~~~~~~~~------------------------~~~   60 (217)
                      ..+.++|+++|+.++|||||+++|++........     .+............                        ...
T Consensus         5 ~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (205)
T d2qn6a3           5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKF   84 (205)
T ss_dssp             CCCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEE
T ss_pred             CCCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccc
Confidence            3456899999999999999999998742211000     00000000000000                        111


Q ss_pred             EEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCC--H
Q 027856           61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS--T  138 (217)
Q Consensus        61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~--~  138 (217)
                      ...+.++|+||+..|.......+..+|++|+|+|+.+.......+..+..+...  ...|++|++||+|+.+..+..  .
T Consensus        85 ~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~--~i~~iIV~vNK~Dl~~~~~~~~~~  162 (205)
T d2qn6a3          85 LRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII--GVKNLIIVQNKVDVVSKEEALSQY  162 (205)
T ss_dssp             EEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT--TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred             eEEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc--CCceeeeccccCCCccchHHHHHH
Confidence            247899999999999988888889999999999998863211222233333332  135888999999997633211  1


Q ss_pred             HHHHHHHHHc---CCcEEEEecCCCCCHHHHHHHHHHHH
Q 027856          139 EDATAFAERE---NTFFMETSALESMNVENAFTEVLTQI  174 (217)
Q Consensus       139 ~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~i~~~~  174 (217)
                      .+...+....   +++++++||++|.|++++++.|..++
T Consensus       163 ~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~i  201 (205)
T d2qn6a3         163 RQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  201 (205)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhC
Confidence            1122222222   36799999999999999999887653

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.83  E-value=1.4e-20  Score=136.07  Aligned_cols=159  Identities=18%  Similarity=0.097  Sum_probs=105.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCc-----C---------CCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhh
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNE-----F---------SLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRA   77 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~-----~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~   77 (217)
                      +.++|+++|+.++|||||+++|++..     .         ........+++.......+......+.++||||+..|..
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~   81 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHH
Confidence            45899999999999999999998520     0         001112233444444444544456899999999999998


Q ss_pred             hhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCC---CHHHHHHHHHHcC-----
Q 027856           78 ITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAV---STEDATAFAEREN-----  149 (217)
Q Consensus        78 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~-----  149 (217)
                      .....+..+|++++|+|+.+...-+..+. +..+...  ...|+|+++||+|+....+.   -..++..+....+     
T Consensus        82 ~~~~~~~~aD~allVVda~~G~~~QT~~~-~~~a~~~--~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~  158 (196)
T d1d2ea3          82 NMITGTAPLDGCILVVAANDGPMPQTREH-LLLARQI--GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE  158 (196)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHHHH-HHHHHHT--TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred             HHHHHHhhcCeEEEEEEcCCCCchhHHHH-HHHHHHh--cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCccc
Confidence            88888899999999999998654333222 2333332  14678899999998653221   1123334443333     


Q ss_pred             CcEEEEecCCC----------CCHHHHHHHHHHH
Q 027856          150 TFFMETSALES----------MNVENAFTEVLTQ  173 (217)
Q Consensus       150 ~~~~~~Sa~~~----------~~i~~~~~~i~~~  173 (217)
                      ++++++||++|          .++.++++.|.+.
T Consensus       159 ~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~  192 (196)
T d1d2ea3         159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY  192 (196)
T ss_dssp             SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred             CEEEEEEccccccccCcccccCCHHHHHHHHHhh
Confidence            56999999988          4677777666543

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=2.7e-19  Score=127.75  Aligned_cols=155  Identities=21%  Similarity=0.188  Sum_probs=99.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEe-EEEEEEECCeEEEEEEEeCCChhhh---------hhhhhhh
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEF-ATRSIRCDDKIVKAQIWDTAGQERY---------RAITSAY   82 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~---------~~~~~~~   82 (217)
                      --.|+++|.+|||||||+|+|++...........+... .......+.  ..+..||++|....         .......
T Consensus         5 ~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (179)
T d1egaa1           5 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASSS   82 (179)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCC--ceeEeecCCCceecchhhhhhhhhhccccc
Confidence            34589999999999999999999876543322222222 223333334  35667888883211         1122233


Q ss_pred             hcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcC-CcEEEEecCCCC
Q 027856           83 YRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAEREN-TFFMETSALESM  161 (217)
Q Consensus        83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~  161 (217)
                      ...+++++++.|........  ..+...+..   ...|.++|+||.|....+.......+......+ .+++++||++|.
T Consensus        83 ~~~~~~~l~~~d~~~~~~~~--~~~~~~l~~---~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~  157 (179)
T d1egaa1          83 IGDVELVIFVVEGTRWTPDD--EMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL  157 (179)
T ss_dssp             CCCEEEEEEEEETTCCCHHH--HHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT
T ss_pred             hhhcceeEEEEecCccchhH--HHHHHHhhh---ccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCCC
Confidence            45678888899877644322  233333333   367889999999987643322333444444455 579999999999


Q ss_pred             CHHHHHHHHHHHH
Q 027856          162 NVENAFTEVLTQI  174 (217)
Q Consensus       162 ~i~~~~~~i~~~~  174 (217)
                      |++++++.|.+++
T Consensus       158 gi~~L~~~i~~~l  170 (179)
T d1egaa1         158 NVDTIAAIVRKHL  170 (179)
T ss_dssp             THHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHhC
Confidence            9999999987654

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.78  E-value=3e-19  Score=130.01  Aligned_cols=142  Identities=18%  Similarity=0.131  Sum_probs=93.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcC------CCCC-----------cccceeEeEEEEEEECCeEEEEEEEeCCChhh
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEF------SLES-----------KSTIGVEFATRSIRCDDKIVKAQIWDTAGQER   74 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~------~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   74 (217)
                      +.++|+++|+.++|||||+++|+...-      ....           ....+++.....+..++  ..+.|+||||+..
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~--~~i~iiDtPGh~d   79 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGHAD   79 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCSGG
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCC--eEEEEEeCCCchh
Confidence            458999999999999999999974200      0000           00223333333444444  6889999999999


Q ss_pred             hhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCccCC---CHHHHHHHHHHcC-
Q 027856           75 YRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIV-IMLVGNKADLRHLRAV---STEDATAFAEREN-  149 (217)
Q Consensus        75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~-  149 (217)
                      |.......+..+|++++|+|+.+....+..+.|... ...   ++| +++++||+|+.+..+.   ..+++..+....+ 
T Consensus        80 f~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~-~~~---gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~  155 (204)
T d2c78a3          80 YIKNMITGAAQMDGAILVVSAADGPMPQTREHILLA-RQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF  155 (204)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHH-HHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred             hHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHH-HHc---CCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCC
Confidence            999888889999999999999987665544433333 332   665 7778999998653221   1122333333322 


Q ss_pred             ----CcEEEEecCC
Q 027856          150 ----TFFMETSALE  159 (217)
Q Consensus       150 ----~~~~~~Sa~~  159 (217)
                          +.++..|+..
T Consensus       156 ~~~~i~~i~~sa~~  169 (204)
T d2c78a3         156 PGDEVPVIRGSALL  169 (204)
T ss_dssp             CTTTSCEEECCHHH
T ss_pred             Ccccceeeeeechh
Confidence                4588888753

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.77  E-value=3.5e-18  Score=125.58  Aligned_cols=151  Identities=24%  Similarity=0.212  Sum_probs=99.2

Q ss_pred             CCCCeeeEEEEEcCCCCCHHHHHHHHhhCcC--CC-------------------------------CCcccceeEeEEEE
Q 027856            8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEF--SL-------------------------------ESKSTIGVEFATRS   54 (217)
Q Consensus         8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~--~~-------------------------------~~~~~~~~~~~~~~   54 (217)
                      .+....+||+++|+.++|||||+.+|+...-  ..                               ......+.+.....
T Consensus         4 ~~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~   83 (222)
T d1zunb3           4 HERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRY   83 (222)
T ss_dssp             TTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEE
T ss_pred             cccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEE
Confidence            3456789999999999999999999974210  00                               00011222222222


Q ss_pred             EEECCeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCC-cEEEEEeCCCCCCc
Q 027856           55 IRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNI-VIMLVGNKADLRHL  133 (217)
Q Consensus        55 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~-p~ivv~nK~D~~~~  133 (217)
                      .  ......+.++|+||+..|..........+|++++|+|+......+..+.+. .+...   ++ .+++++||+|+.+.
T Consensus        84 ~--~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~-~~~~~---gv~~iiv~vNK~D~~~~  157 (222)
T d1zunb3          84 F--STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSY-IASLL---GIKHIVVAINKMDLNGF  157 (222)
T ss_dssp             E--ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHH-HHHHT---TCCEEEEEEECTTTTTS
T ss_pred             E--eccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHHHH-HHHHc---CCCEEEEEEEccccccc
Confidence            2  223358899999999999998888999999999999998865544433322 22222   54 47889999999764


Q ss_pred             cCCCH----HHHHHHHHHcCC-----cEEEEecCCCCCHH
Q 027856          134 RAVST----EDATAFAERENT-----FFMETSALESMNVE  164 (217)
Q Consensus       134 ~~~~~----~~~~~~~~~~~~-----~~~~~Sa~~~~~i~  164 (217)
                      .+...    +++..+....++     +++++||.+|.|+.
T Consensus       158 ~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         158 DERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             cceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence            32222    233444555433     57999999999873

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=1.9e-17  Score=118.55  Aligned_cols=163  Identities=16%  Similarity=0.093  Sum_probs=87.5

Q ss_pred             CCCCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChh-------hhhhh-
Q 027856            7 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE-------RYRAI-   78 (217)
Q Consensus         7 ~~~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-------~~~~~-   78 (217)
                      ..+.+..++|+++|.+|||||||+|+|++...........+................+..++.++..       ..... 
T Consensus        10 ~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (188)
T d1puia_          10 HLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRAL   89 (188)
T ss_dssp             GSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHH
T ss_pred             HCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhh
Confidence            4456778999999999999999999999987654433332222223333222222233333322211       11111 


Q ss_pred             --hhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCC--HHHHHHHHHHc--CCcE
Q 027856           79 --TSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS--TEDATAFAERE--NTFF  152 (217)
Q Consensus        79 --~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~--~~~~  152 (217)
                        ........+.++.+.+......... ..++..+...   ..++++++||+|+.+.....  .++..+.....  ..++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~  165 (188)
T d1puia_          90 GEYLEKRQSLQGLVVLMDIRHPLKDLD-QQMIEWAVDS---NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQV  165 (188)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHHT---TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEE
T ss_pred             hhhhhhhhheeEEEEeecccccchhHH-HHHHHHhhhc---cccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcE
Confidence              1122234455666666655443322 3344444433   67889999999986632211  11222222222  3468


Q ss_pred             EEEecCCCCCHHHHHHHHHHH
Q 027856          153 METSALESMNVENAFTEVLTQ  173 (217)
Q Consensus       153 ~~~Sa~~~~~i~~~~~~i~~~  173 (217)
                      +++||++|.|++++++.|.+.
T Consensus       166 i~vSA~~g~Gid~L~~~i~~~  186 (188)
T d1puia_         166 ETFSSLKKQGVDKLRQKLDTW  186 (188)
T ss_dssp             EECBTTTTBSHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHH
Confidence            999999999999999988654

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=9.7e-18  Score=122.36  Aligned_cols=116  Identities=20%  Similarity=0.237  Sum_probs=80.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhhhhhhhhh----hcCCc
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAY----YRGAV   87 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~----~~~~d   87 (217)
                      +.++|+++|++|||||||+|+|++..+.+    +.+....  ...+......+.+||+||++.+...+..+    ...++
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~----~tt~~~~--~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~   75 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRP----TVVSQEP--LSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK   75 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCC----BCCCSSC--EEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCC----eEEecce--EEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhcc
Confidence            35689999999999999999999987643    2222222  22234444678999999988766554443    34568


Q ss_pred             EEEEEEECCC-hhhHHHHHH----HHHHHHhhcCCCCcEEEEEeCCCCCCc
Q 027856           88 GALLVYDVTR-HVTFENVER----WLKELRDHTDSNIVIMLVGNKADLRHL  133 (217)
Q Consensus        88 ~ii~v~d~~~-~~s~~~~~~----~~~~l~~~~~~~~p~ivv~nK~D~~~~  133 (217)
                      .+++++|+.+ ..+++....    ++..+......++|+++|+||+|+...
T Consensus        76 ~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          76 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             EEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             ccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence            8899999764 444444433    344445555678999999999999763

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=1.1e-16  Score=118.89  Aligned_cols=148  Identities=16%  Similarity=0.145  Sum_probs=97.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhC--cCC-----------------------------CCCcccceeEeEEEEEEECCe
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRN--EFS-----------------------------LESKSTIGVEFATRSIRCDDK   60 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~   60 (217)
                      ..++|+++|+.++|||||+.+|+..  ...                             .+.....+++.....+.+.+ 
T Consensus         5 ~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~-   83 (239)
T d1f60a3           5 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK-   83 (239)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS-
T ss_pred             CccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC-
Confidence            4589999999999999999999631  000                             00111233333333443344 


Q ss_pred             EEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhh-------HHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCC
Q 027856           61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVT-------FENVERWLKELRDHTDSNIV-IMLVGNKADLRH  132 (217)
Q Consensus        61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s-------~~~~~~~~~~l~~~~~~~~p-~ivv~nK~D~~~  132 (217)
                       .++.|+||||+..|.......+..+|++|+|+|+....-       .+..+.|+ .+...   ++| +|+++||+|+.+
T Consensus        84 -~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~-~~~~~---gv~~iiv~iNKmD~~~  158 (239)
T d1f60a3          84 -YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHAL-LAFTL---GVRQLIVAVNKMDSVK  158 (239)
T ss_dssp             -EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHH-HHHHT---TCCEEEEEEECGGGGT
T ss_pred             -EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHH-HHHHc---CCCeEEEEEECCCCCC
Confidence             799999999999999999999999999999999986521       12222222 22222   554 788999999876


Q ss_pred             ccCCCH----HHHHHHHHHcC-----CcEEEEecCCCCCHHH
Q 027856          133 LRAVST----EDATAFAEREN-----TFFMETSALESMNVEN  165 (217)
Q Consensus       133 ~~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  165 (217)
                      .+....    +++..+....+     +.++++|+..|.|+-+
T Consensus       159 ~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         159 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            432222    23344444433     4589999999988644

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.68  E-value=1.6e-15  Score=113.79  Aligned_cols=112  Identities=18%  Similarity=0.189  Sum_probs=81.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCC------C------------CcccceeEeEEEEEEECCeEEEEEEEeCCChhhh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSL------E------------SKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY   75 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~------~------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   75 (217)
                      -+|+++|+.++|||||+.+|+...-..      .            .....++......+.+++  .+++++||||+..|
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~--~~~n~iDtPGh~dF   80 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYGDF   80 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSGGG
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc--cceeEEccCchhhh
Confidence            479999999999999999996421100      0            011223334444555555  57899999999999


Q ss_pred             hhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027856           76 RAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~  131 (217)
                      .......+.-+|++++|+|+.+.-..+....|. .+...   ++|.++++||+|..
T Consensus        81 ~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~-~~~~~---~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          81 VGEIRGALEAADAALVAVSAEAGVQVGTERAWT-VAERL---GLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHHT---TCCEEEEEECGGGC
T ss_pred             hhhhhhhhcccCceEEEeeccCCccchhHHHHH-hhhhc---cccccccccccccc
Confidence            998888999999999999999876655544444 33333   89999999999963

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.64  E-value=8e-16  Score=113.34  Aligned_cols=149  Identities=18%  Similarity=0.159  Sum_probs=91.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcC-------------------------------CCCCcccceeEeEEEEEEECCe
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEF-------------------------------SLESKSTIGVEFATRSIRCDDK   60 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~   60 (217)
                      +.++|+++|+.++|||||+.+|+...-                               ....  ..+.+.......++..
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~--~rg~ti~~~~~~~~~~   79 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEER--ERGVTINLTFMRFETK   79 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-------------CEEECS
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhh--cCCccccceEEEEecC
Confidence            368999999999999999999864110                               0011  1122222222233333


Q ss_pred             EEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHH------HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCcc
Q 027856           61 IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFE------NVERWLKELRDHTDSNIVIMLVGNKADLRHLR  134 (217)
Q Consensus        61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~------~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~  134 (217)
                      .+.+.++||||+..|.......+.-+|++++|+|+.+.....      ....-+..+...  ...++++++||+|+....
T Consensus        80 ~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~--~~~~iIv~iNK~D~~~~~  157 (224)
T d1jnya3          80 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDLTEPP  157 (224)
T ss_dssp             SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGGSSST
T ss_pred             CceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh--CCCceEEEEEcccCCCcc
Confidence            468999999999999999999999999999999999853211      111111111111  134678899999986422


Q ss_pred             CC--CH----HHHHHHHHHc-----CCcEEEEecCCCCCHH
Q 027856          135 AV--ST----EDATAFAERE-----NTFFMETSALESMNVE  164 (217)
Q Consensus       135 ~~--~~----~~~~~~~~~~-----~~~~~~~Sa~~~~~i~  164 (217)
                      ..  ..    .++..+....     .+.++++||..|.|+.
T Consensus       158 ~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~  198 (224)
T d1jnya3         158 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNIT  198 (224)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred             ccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCcc
Confidence            11  11    2223333333     2458999999999874

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.63  E-value=1.2e-15  Score=113.64  Aligned_cols=154  Identities=20%  Similarity=0.160  Sum_probs=83.4

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcC-------------------------------CCCCcccceeEeEEEEEEEC
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEF-------------------------------SLESKSTIGVEFATRSIRCD   58 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   58 (217)
                      ....++|+++|+.++|||||+.+|+...-                               ........+++......  .
T Consensus        21 ~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~--~   98 (245)
T d1r5ba3          21 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYF--E   98 (245)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEE--E
T ss_pred             CCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccc--c
Confidence            34578999999999999999999953110                               00000011111111222  2


Q ss_pred             CeEEEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHH------HHHHHHHHHHhhcCCCC-cEEEEEeCCCCC
Q 027856           59 DKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFE------NVERWLKELRDHTDSNI-VIMLVGNKADLR  131 (217)
Q Consensus        59 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~------~~~~~~~~l~~~~~~~~-p~ivv~nK~D~~  131 (217)
                      .....+.++||||+..|..........+|++++|+|+.+..--.      .....+..+...   ++ ++++++||+|+.
T Consensus        99 ~~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~---~i~~iiv~iNKmD~~  175 (245)
T d1r5ba3          99 TEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ---GINHLVVVINKMDEP  175 (245)
T ss_dssp             CSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT---TCSSEEEEEECTTST
T ss_pred             cccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc---CCCeEEEEEEcCCCC
Confidence            23358899999999999998888899999999999998753110      111222222222   44 478999999986


Q ss_pred             Ccc--CCCHH----HHHHHHHHc-------CCcEEEEecCCCCCHHHHHH
Q 027856          132 HLR--AVSTE----DATAFAERE-------NTFFMETSALESMNVENAFT  168 (217)
Q Consensus       132 ~~~--~~~~~----~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~~  168 (217)
                      ...  +...+    ++..+....       .++++++||++|+|+.++++
T Consensus       176 ~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         176 SVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             TCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            422  11122    222222222       24699999999999976543

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.62  E-value=4.6e-15  Score=111.55  Aligned_cols=132  Identities=17%  Similarity=0.190  Sum_probs=90.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCc--CC----------------CCCcccceeEeEEEEEEECCeEEEEEEEeCCChh
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNE--FS----------------LESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQE   73 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   73 (217)
                      ..-+|+++|+.|+|||||+.+|+...  ..                .+.....++......+.+++  .+++|+||||+.
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~--~~~n~iDtPG~~   82 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDAPGHV   82 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETT--EEEEEECCCSSS
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCC--eEEEEecCCchh
Confidence            34579999999999999999987421  10                01111223333334444455  689999999999


Q ss_pred             hhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHH-HHHHHHcCCcE
Q 027856           74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDA-TAFAERENTFF  152 (217)
Q Consensus        74 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~~~~~~~~  152 (217)
                      .|.......+.-+|++|+|+|+.+.-..+....| +....   .+.|.++++||+|...   .+..+. .+.-..++..+
T Consensus        83 dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w-~~a~~---~~lP~i~fINKmDr~~---ad~~~~l~ei~~~l~~~~  155 (276)
T d2bv3a2          83 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAEK---YKVPRIAFANKMDKTG---ADLWLVIRTMQERLGARP  155 (276)
T ss_dssp             SCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHH-HHHHT---TTCCEEEEEECTTSTT---CCHHHHHHHHHHTTCCCE
T ss_pred             hhHHHHHHHHHhhhheEEeccccCCcchhHHHHH-HHHHH---cCCCEEEEEecccccc---cccchhHHHHHHHhCCCe
Confidence            9999888899999999999999987655544444 33333   3899999999999855   234333 34444455443

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=7.4e-15  Score=116.82  Aligned_cols=159  Identities=11%  Similarity=0.135  Sum_probs=92.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcc---cceeEeEEEEEEECCeEEEEEEEeCCChhhhh-----hhhhhhh
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKS---TIGVEFATRSIRCDDKIVKAQIWDTAGQERYR-----AITSAYY   83 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----~~~~~~~   83 (217)
                      ..++|+|+|.+|+|||||+|+|+|.........   ..+++.....+...+ ...+.+|||||.....     .+....+
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~-~~~~~l~DtPG~~~~~~~~~~~~~~~~~  133 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKMKF  133 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccC-CCeEEEEeCCCcccccccHHHHHHHhhh
Confidence            368999999999999999999998654322111   111222222222222 1257899999943222     1223345


Q ss_pred             cCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCc-------cCCCHHH----HHHH----HHHc
Q 027856           84 RGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHL-------RAVSTED----ATAF----AERE  148 (217)
Q Consensus        84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~-------~~~~~~~----~~~~----~~~~  148 (217)
                      ..+|+++++.|..-.  -.+ ..+...+...   ++|+++|.||+|....       .....+.    +++.    ....
T Consensus       134 ~~~d~~l~~~~~~~~--~~d-~~l~~~l~~~---~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~  207 (400)
T d1tq4a_         134 YEYDFFIIISATRFK--KND-IDIAKAISMM---KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN  207 (400)
T ss_dssp             GGCSEEEEEESSCCC--HHH-HHHHHHHHHT---TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             hcceEEEEecCCCCC--HHH-HHHHHHHHHc---CCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHc
Confidence            678988888775322  222 2344445443   7899999999996310       1112221    2111    2222


Q ss_pred             C---CcEEEEecCC--CCCHHHHHHHHHHHHHHH
Q 027856          149 N---TFFMETSALE--SMNVENAFTEVLTQIYRV  177 (217)
Q Consensus       149 ~---~~~~~~Sa~~--~~~i~~~~~~i~~~~~~~  177 (217)
                      +   .++|.+|..+  ..++.++.+.+.+.+.+.
T Consensus       208 ~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~  241 (400)
T d1tq4a_         208 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  241 (400)
T ss_dssp             TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             CCCCCCEEEecCCcccccCHHHHHHHHHHHhHHH
Confidence            3   3478888765  357888888888776544

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.60  E-value=6.2e-15  Score=110.68  Aligned_cols=125  Identities=15%  Similarity=0.053  Sum_probs=78.4

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCc-ccceeEeEEEEEEECCeEEEEEEEeCCChhh-------hhhhhh--
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEFATRSIRCDDKIVKAQIWDTAGQER-------YRAITS--   80 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~--   80 (217)
                      ...++|+++|.+|+|||||+|++++........ +..+..........++  ..+.++||||...       ......  
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHHHH
Confidence            457999999999999999999999987654332 2222233334444566  5789999999321       111111  


Q ss_pred             hhhcCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCC--CCcEEEEEeCCCCCCccCCCH
Q 027856           81 AYYRGAVGALLVYDVTRHV-TFENVERWLKELRDHTDS--NIVIMLVGNKADLRHLRAVST  138 (217)
Q Consensus        81 ~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~--~~p~ivv~nK~D~~~~~~~~~  138 (217)
                      ......+++++|++++... +.. -...+..+...++.  -.++++|+||+|....+....
T Consensus       108 ~~~~~~~~il~v~~~~~~r~~~~-~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~~  167 (257)
T d1h65a_         108 LLDKTIDVLLYVDRLDAYRVDNL-DKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPY  167 (257)
T ss_dssp             TTTCEECEEEEEEESSCCCCCHH-HHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCH
T ss_pred             HhcCCCCeEEEEEECCCCCCCHH-HHHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCcH
Confidence            1224568899999887542 222 12333444443332  257899999999876544444

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=1.9e-14  Score=111.39  Aligned_cols=116  Identities=22%  Similarity=0.246  Sum_probs=82.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCc--C--------------CCCCcccceeEeEEEEEEE--------------CCeE
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNE--F--------------SLESKSTIGVEFATRSIRC--------------DDKI   61 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~--~--------------~~~~~~~~~~~~~~~~~~~--------------~~~~   61 (217)
                      ..-+|+|+|+.++|||||+.+|+...  .              ..+.....++......+.+              ++..
T Consensus        16 ~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~   95 (341)
T d1n0ua2          16 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS   95 (341)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred             cCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccc
Confidence            33469999999999999999997311  0              0011111122222222222              3456


Q ss_pred             EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 027856           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR  131 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~  131 (217)
                      +.++++||||+..|.......++-+|++++|+|+.++-..+....|......    +.|+++++||+|..
T Consensus        96 ~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~----~~p~i~viNKiDr~  161 (341)
T d1n0ua2          96 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGE----RIKPVVVINKVDRA  161 (341)
T ss_dssp             EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT----TCEEEEEEECHHHH
T ss_pred             eEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHc----CCCeEEEEECcccc
Confidence            7899999999999999888899999999999999998766655555554443    88999999999974

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.43  E-value=2.7e-13  Score=100.57  Aligned_cols=109  Identities=13%  Similarity=-0.035  Sum_probs=64.7

Q ss_pred             EEEEEeCCChhhhhhhhhh---h--hcCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCcc
Q 027856           63 KAQIWDTAGQERYRAITSA---Y--YRGAVGALLVYDVTR---HVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLR  134 (217)
Q Consensus        63 ~~~l~Dt~G~~~~~~~~~~---~--~~~~d~ii~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~  134 (217)
                      .+.++|+||+..+......   +  ....+.+++++|+..   +................  -..|.++|+||+|+....
T Consensus        96 ~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~--~~~~~ivvinK~D~~~~~  173 (244)
T d1yrba1          96 DYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLSEE  173 (244)
T ss_dssp             SEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCCHH
T ss_pred             ceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH--hCCCceeeeeccccccHH
Confidence            6889999998765432222   1  124568899999764   33322221111111111  278899999999986532


Q ss_pred             CCCH--------HH------------------HHHHHHH--cCCcEEEEecCCCCCHHHHHHHHHHH
Q 027856          135 AVST--------ED------------------ATAFAER--ENTFFMETSALESMNVENAFTEVLTQ  173 (217)
Q Consensus       135 ~~~~--------~~------------------~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~  173 (217)
                      ....        ..                  .......  ..++++++||++|+|+++++..|.++
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~  240 (244)
T d1yrba1         174 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH  240 (244)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            1100        00                  0000111  34679999999999999999888765

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.37  E-value=2.6e-12  Score=97.26  Aligned_cols=84  Identities=21%  Similarity=0.146  Sum_probs=57.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeE---------------EEEEEEeCCChhh---
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKI---------------VKAQIWDTAGQER---   74 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~---   74 (217)
                      .++|++||.|+||||||++++++........++.+.+.....+.+.+..               ..+.++|+||...   
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            4799999999999999999999987655444555566555566554331               2588999999422   


Q ss_pred             ----hhhhhhhhhcCCcEEEEEEECC
Q 027856           75 ----YRAITSAYYRGAVGALLVYDVT   96 (217)
Q Consensus        75 ----~~~~~~~~~~~~d~ii~v~d~~   96 (217)
                          ........++.+|++++|+|+.
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cCCCccHHHHHHHHhccceEEEeecc
Confidence                1222345578999999999874

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.37  E-value=1.5e-12  Score=100.23  Aligned_cols=106  Identities=13%  Similarity=0.090  Sum_probs=63.4

Q ss_pred             EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHH
Q 027856           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDA  141 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  141 (217)
                      +.+.|++|.|.-   ..-......+|.+++|..+...+..+....-+-++   .     =++|+||+|+.+.........
T Consensus       144 ~d~iiiETVG~g---q~e~~~~~~~D~~v~v~~p~~GD~iQ~~k~gilE~---a-----Di~vvNKaD~~~~~~~~~~~~  212 (323)
T d2qm8a1         144 FDVILVETVGVG---QSETAVADLTDFFLVLMLPGAGDELQGIKKGIFEL---A-----DMIAVNKADDGDGERRASAAA  212 (323)
T ss_dssp             CCEEEEEECSSS---SCHHHHHTTSSEEEEEECSCC------CCTTHHHH---C-----SEEEEECCSTTCCHHHHHHHH
T ss_pred             CCeEEEeehhhh---hhhhhhhcccceEEEEeeccchhhhhhhhhhHhhh---h-----heeeEeccccccchHHHHHHH
Confidence            477788888731   11222445689999999988776544332222222   1     289999999865322212111


Q ss_pred             HHHHH----------HcCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 027856          142 TAFAE----------RENTFFMETSALESMNVENAFTEVLTQIYRVV  178 (217)
Q Consensus       142 ~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  178 (217)
                      ..+..          .+..+++.+||.+|.|++++++.|.++.....
T Consensus       213 ~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~~~  259 (323)
T d2qm8a1         213 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKLT  259 (323)
T ss_dssp             HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            11111          14567999999999999999999987765443

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=4.8e-13  Score=103.14  Aligned_cols=104  Identities=14%  Similarity=0.094  Sum_probs=59.4

Q ss_pred             EEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCC--HHH
Q 027856           63 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVS--TED  140 (217)
Q Consensus        63 ~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~  140 (217)
                      .+.|++|.|.-.   .-..+...+|.+++|.++...+..+.....+-++   .     =++|+||+|........  ..+
T Consensus       148 d~iliEtvG~gq---~e~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~---a-----Di~VvNKaD~~~~~~~~~~~~~  216 (327)
T d2p67a1         148 DVVIVETVGVGQ---SETEVARMVDCFISLQIAGGGDDLQGIKKGLMEV---A-----DLIVINKDDGDNHTNVAIARHM  216 (327)
T ss_dssp             SEEEEEEECCTT---HHHHHHTTCSEEEEEECC------CCCCHHHHHH---C-----SEEEECCCCTTCHHHHHHHHHH
T ss_pred             CeEEEeeccccc---cchhhhhccceEEEEecCCCchhhhhhchhhhcc---c-----cEEEEEeecccchHHHHHHHHH
Confidence            556667766211   1123556789999998876655443333322222   1     27889999986522111  111


Q ss_pred             HHHHHH-------HcCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027856          141 ATAFAE-------RENTFFMETSALESMNVENAFTEVLTQIYRV  177 (217)
Q Consensus       141 ~~~~~~-------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  177 (217)
                      ......       .+..+++.+||.+|+|++++++.|.++....
T Consensus       217 ~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~~l  260 (327)
T d2p67a1         217 YESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTAL  260 (327)
T ss_dssp             HHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHHHH
Confidence            222221       2345699999999999999999998766543

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.32  E-value=2.9e-11  Score=92.21  Aligned_cols=86  Identities=15%  Similarity=0.165  Sum_probs=61.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCC-CCCcccceeEeEEEEEEECCe---------------EEEEEEEeCCChhh-
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFS-LESKSTIGVEFATRSIRCDDK---------------IVKAQIWDTAGQER-   74 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~-   74 (217)
                      ..++|+++|.|+||||||++++++...+ ....|..|++.....+.+.+.               ...+.++|.||... 
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~g   88 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   88 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccccc
Confidence            4589999999999999999999987542 333355556655555655442               24789999999432 


Q ss_pred             ------hhhhhhhhhcCCcEEEEEEECCC
Q 027856           75 ------YRAITSAYYRGAVGALLVYDVTR   97 (217)
Q Consensus        75 ------~~~~~~~~~~~~d~ii~v~d~~~   97 (217)
                            ........++.+|++++|+|+.+
T Consensus        89 A~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          89 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccccccHHHHHHHhhccceeEEEEeccC
Confidence                  12233445689999999999865

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=1.2e-11  Score=94.52  Aligned_cols=120  Identities=18%  Similarity=0.201  Sum_probs=74.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCC-CcccceeEeEEEEEEEC----------Ce--------------------
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLE-SKSTIGVEFATRSIRCD----------DK--------------------   60 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~--------------------   60 (217)
                      ..++|+|+|..++|||||+|+|+|..+.+. ..+++............          +.                    
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhh
Confidence            456899999999999999999999886443 33322111111111100          00                    


Q ss_pred             -------------------EEEEEEEeCCChh-------------hhhhhhhhhhcCCc-EEEEEEECCChhhHHHHHHH
Q 027856           61 -------------------IVKAQIWDTAGQE-------------RYRAITSAYYRGAV-GALLVYDVTRHVTFENVERW  107 (217)
Q Consensus        61 -------------------~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~~~  107 (217)
                                         ...+.|+|+||..             ....+...|+...+ ++++|.++....+......+
T Consensus       105 ~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~  184 (299)
T d2akab1         105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  184 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred             CCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHH
Confidence                               0147899999931             12344556666666 55667777665554444455


Q ss_pred             HHHHHhhcCCCCcEEEEEeCCCCCCcc
Q 027856          108 LKELRDHTDSNIVIMLVGNKADLRHLR  134 (217)
Q Consensus       108 ~~~l~~~~~~~~p~ivv~nK~D~~~~~  134 (217)
                      ...+..   ...++++|+||+|..++.
T Consensus       185 ~~~~~~---~~~r~i~Vltk~D~~~~~  208 (299)
T d2akab1         185 AKEVDP---QGQRTIGVITKLDLMDEG  208 (299)
T ss_dssp             HHHHCT---TCSSEEEEEECGGGSCTT
T ss_pred             HHHhCc---CCCceeeEEeccccccch
Confidence            554433   367899999999987643

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.19  E-value=5.5e-11  Score=91.06  Aligned_cols=117  Identities=17%  Similarity=0.230  Sum_probs=69.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEE------------------------------------
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIR------------------------------------   56 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~------------------------------------   56 (217)
                      .++|+|+|..++|||||||+|+|.++.+....+.+.......+.                                    
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  103 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEII  103 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCccccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHHHHH
Confidence            56899999999999999999999887443322111111111100                                    


Q ss_pred             -----------------------ECCeEEEEEEEeCCChh-------------hhhhhhhhhhcCCcEEEEEE-ECCChh
Q 027856           57 -----------------------CDDKIVKAQIWDTAGQE-------------RYRAITSAYYRGAVGALLVY-DVTRHV   99 (217)
Q Consensus        57 -----------------------~~~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~ii~v~-d~~~~~   99 (217)
                                             ... ...+.++||||..             ....+...|+..++.+++++ ++....
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~  182 (306)
T d1jwyb_         104 RDTDRMTGKNKGISAQPINLKIYSPH-VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL  182 (306)
T ss_dssp             HHCC--------CCCCCEEEEEEETT-SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred             HHHHHhcCCCCcccccceEEEecCCC-CCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccc
Confidence                                   000 0256799999932             12345667788888766554 544333


Q ss_pred             hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCc
Q 027856          100 TFENVERWLKELRDHTDSNIVIMLVGNKADLRHL  133 (217)
Q Consensus       100 s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~  133 (217)
                      .......+...+.   ....++++|+||+|..+.
T Consensus       183 ~~~~~~~~~~~~~---~~~~r~i~Vitk~D~~~~  213 (306)
T d1jwyb_         183 ANSDALQLAKEVD---PEGKRTIGVITKLDLMDK  213 (306)
T ss_dssp             TTCSHHHHHHHHC---SSCSSEEEEEECTTSSCS
T ss_pred             cccHHHHHHHHhC---cCCCeEEEEEeccccccc
Confidence            2222233444443   235689999999998653

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.13  E-value=4.9e-11  Score=91.86  Aligned_cols=84  Identities=19%  Similarity=0.161  Sum_probs=46.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEE----------------------ECCeEEEEEEEeCCC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIR----------------------CDDKIVKAQIWDTAG   71 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~l~Dt~G   71 (217)
                      ++|+++|.|+||||||+|+|++........|..|.+.......                      .......+.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            5899999999999999999999876544445444433222111                      012236799999999


Q ss_pred             hhhh-------hhhhhhhhcCCcEEEEEEECCC
Q 027856           72 QERY-------RAITSAYYRGAVGALLVYDVTR   97 (217)
Q Consensus        72 ~~~~-------~~~~~~~~~~~d~ii~v~d~~~   97 (217)
                      .-..       .......++.+|++++|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            4221       1222234578999999999863

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.82  E-value=2e-09  Score=80.79  Aligned_cols=58  Identities=21%  Similarity=0.429  Sum_probs=38.4

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCC
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAG   71 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   71 (217)
                      ....++|+|+|.||||||||+|+|.+....... +..|.+.....+..+.   .+.++||||
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~-~~pG~Tr~~~~i~~~~---~~~l~DTPG  166 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTG-DRPGITTSQQWVKVGK---ELELLDTPG  166 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCC
T ss_pred             CCCceEEEEEecCccchhhhhhhhhccceEEEC-CcccccccceEEECCC---CeEEecCCC
Confidence            446799999999999999999999998765443 5555555555555444   578999999

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.45  E-value=9.7e-07  Score=61.15  Aligned_cols=24  Identities=29%  Similarity=0.725  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      +||+++|++|+|||||++.+++..
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~l   24 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhcC
Confidence            589999999999999999998743

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.44  E-value=4.2e-08  Score=70.71  Aligned_cols=58  Identities=22%  Similarity=0.181  Sum_probs=34.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcCCCC------CcccceeEeEEEEEEECCeEEEEEEEeCCChhhh
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEFSLE------SKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY   75 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   75 (217)
                      ..+++|++|||||||+|+|.+......      ......++.....+...+.   ..++||||...+
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~  160 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANL  160 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTC
T ss_pred             eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCccccc
Confidence            568999999999999999997643211      1111112222333444432   259999995443

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.43  E-value=1.1e-06  Score=62.80  Aligned_cols=144  Identities=18%  Similarity=0.174  Sum_probs=75.3

Q ss_pred             CCCeeeEEEEEcCCCCCHHHHHHHHhhCcCCCCC---------------------cccceeEeEEEEEEEC---------
Q 027856            9 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLES---------------------KSTIGVEFATRSIRCD---------   58 (217)
Q Consensus         9 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~---------------------~~~~~~~~~~~~~~~~---------   58 (217)
                      ++..+.-|+++|++|+||||.+-.|...-.....                     ....+.......-.-+         
T Consensus         7 ~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~   86 (213)
T d1vmaa2           7 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV   86 (213)
T ss_dssp             CSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccchhHHHHHHhhhcCccccccCCCCcHHHHHHHHH
Confidence            4455678899999999999998776643111000                     0011111110000000         


Q ss_pred             ----CeEEEEEEEeCCChhhh--------hhhhhhhh----cCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcE
Q 027856           59 ----DKIVKAQIWDTAGQERY--------RAITSAYY----RGAVGALLVYDVTRHV-TFENVERWLKELRDHTDSNIVI  121 (217)
Q Consensus        59 ----~~~~~~~l~Dt~G~~~~--------~~~~~~~~----~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~  121 (217)
                          ...+.+.|+||+|...+        ..+....-    ...+-.++|+|+.... ....+...+..+      + +-
T Consensus        87 ~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~------~-~~  159 (213)
T d1vmaa2          87 AHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAV------N-VT  159 (213)
T ss_dssp             HHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHHS------C-CC
T ss_pred             HHHHHcCCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhhhhhcccc------C-Cc
Confidence                00246899999993211        11111111    1246788999986542 233332332222      2 23


Q ss_pred             EEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHHH
Q 027856          122 MLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVEN  165 (217)
Q Consensus       122 ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  165 (217)
                      -+|+||.|...    ..=.+.......+.++..++.  |.++++
T Consensus       160 ~lI~TKlDe~~----~~G~~l~~~~~~~~Pi~~i~~--Gq~v~D  197 (213)
T d1vmaa2         160 GIILTKLDGTA----KGGITLAIARELGIPIKFIGV--GEKAED  197 (213)
T ss_dssp             EEEEECGGGCS----CTTHHHHHHHHHCCCEEEEEC--SSSGGG
T ss_pred             eEEEecccCCC----cccHHHHHHHHHCCCEEEEeC--CCCccc
Confidence            57899999643    233456677788888777763  444433

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.35  E-value=2e-06  Score=61.20  Aligned_cols=85  Identities=12%  Similarity=0.036  Sum_probs=49.6

Q ss_pred             EEEEEEeCCChhhhhh----hhhhh---h-----cCCcEEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 027856           62 VKAQIWDTAGQERYRA----ITSAY---Y-----RGAVGALLVYDVTRH-VTFENVERWLKELRDHTDSNIVIMLVGNKA  128 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~----~~~~~---~-----~~~d~ii~v~d~~~~-~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~  128 (217)
                      ..+.|+||+|...+..    .+..+   .     ...+-+++|+|+... .....+...+..+.      .. -+++||.
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~------~~-~lI~TKl  161 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVG------LT-GVIVTKL  161 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHC------CS-EEEEECT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhccC------Cc-eEEEecc
Confidence            4789999999422211    11111   1     245678888898754 34444444444442      22 4789999


Q ss_pred             CCCCccCCCHHHHHHHHHHcCCcEEEEec
Q 027856          129 DLRHLRAVSTEDATAFAERENTFFMETSA  157 (217)
Q Consensus       129 D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  157 (217)
                      |....    .=.+.......+.++..++.
T Consensus       162 Det~~----~G~~l~~~~~~~~Pi~~i~~  186 (207)
T d1okkd2         162 DGTAK----GGVLIPIVRTLKVPIKFVGV  186 (207)
T ss_dssp             TSSCC----CTTHHHHHHHHCCCEEEEEC
T ss_pred             CCCCC----ccHHHHHHHHHCCCEEEEeC
Confidence            97542    22355667778888766663

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.32  E-value=9.1e-07  Score=63.58  Aligned_cols=84  Identities=18%  Similarity=0.124  Sum_probs=60.7

Q ss_pred             hhcCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHH--cCCcEEEEecC
Q 027856           82 YYRGAVGALLVYDVTRHV-TFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAER--ENTFFMETSAL  158 (217)
Q Consensus        82 ~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~  158 (217)
                      ...++|.+++|+++.+|. +...++.++-.....   +++.+||+||+|+.+..+  .+....+...  .+.+++.+|++
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~---~i~pvIvlnK~DL~~~~~--~~~~~~~~~~~~~~~~v~~vSa~   81 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN---ELETVMVINKMDLYDEDD--LRKVRELEEIYSGLYPIVKTSAK   81 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT---TCEEEEEECCGGGCCHHH--HHHHHHHHHHHTTTSCEEECCTT
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc---CCCEEEEEeCcccCCHHH--HHHHHHhhcccccceeEEEeccc
Confidence            457889999999998864 455567777666554   889999999999976321  2223333332  34679999999


Q ss_pred             CCCCHHHHHHHH
Q 027856          159 ESMNVENAFTEV  170 (217)
Q Consensus       159 ~~~~i~~~~~~i  170 (217)
                      ++.|++++...+
T Consensus        82 ~~~g~~~L~~~l   93 (225)
T d1u0la2          82 TGMGIEELKEYL   93 (225)
T ss_dssp             TCTTHHHHHHHH
T ss_pred             cchhHhhHHHHh
Confidence            999999887655

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.30  E-value=2.5e-06  Score=60.84  Aligned_cols=90  Identities=14%  Similarity=0.106  Sum_probs=52.7

Q ss_pred             EEEEEEeCCChhhhh------hhhhhh--hcCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 027856           62 VKAQIWDTAGQERYR------AITSAY--YRGAVGALLVYDVTRHV-TFENVERWLKELRDHTDSNIVIMLVGNKADLRH  132 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~------~~~~~~--~~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~  132 (217)
                      ..+.|+||+|...+.      .....+  .-..+-+++|+++.... ..+.+...+..+      +. --+++||.|...
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~~~------~~-~~lI~TKlDet~  167 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQAS------KI-GTIIITKMDGTA  167 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHHC------TT-EEEEEECTTSCS
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhhccc------Cc-ceEEEecccCCC
Confidence            478999999943221      111111  12456788888887653 232222222221      22 247799999643


Q ss_pred             ccCCCHHHHHHHHHHcCCcEEEEecCCCCCHH
Q 027856          133 LRAVSTEDATAFAERENTFFMETSALESMNVE  164 (217)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  164 (217)
                          ..=.+.......+.++..++.  |.+++
T Consensus       168 ----~~G~~l~~~~~~~lPi~~it~--Gq~v~  193 (211)
T d1j8yf2         168 ----KGGGALSAVAATGATIKFIGT--GEKID  193 (211)
T ss_dssp             ----CHHHHHHHHHTTTCCEEEEEC--SSSTT
T ss_pred             ----cccHHHHHHHHHCcCEEEEeC--CCCcc
Confidence                456677788888999777773  54443

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.28  E-value=1.6e-06  Score=64.63  Aligned_cols=95  Identities=11%  Similarity=0.049  Sum_probs=67.7

Q ss_pred             hhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcCCcEEEEec
Q 027856           78 ITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSA  157 (217)
Q Consensus        78 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  157 (217)
                      .....++.+|++++|+|+.+|.+..+  ..+..+.    .++|.++|+||+|+.+..  ..++..++....+..++.+|+
T Consensus         8 ~i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~----~~Kp~IlVlNK~DLv~~~--~~~~w~~~f~~~~~~~i~isa   79 (273)
T d1puja_           8 EVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL----KNKPRIMLLNKADKADAA--VTQQWKEHFENQGIRSLSINS   79 (273)
T ss_dssp             HHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC----SSSCEEEEEECGGGSCHH--HHHHHHHHHHTTTCCEEECCT
T ss_pred             HHHHHHHhCCEEEEEEECCCCCCCCC--HHHHHHH----cCCCeEEEEECccCCchH--HHHHHHHHHHhcCCccceeec
Confidence            34556889999999999999876432  1222222    278999999999997632  123333444556778999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhh
Q 027856          158 LESMNVENAFTEVLTQIYRVVSR  180 (217)
Q Consensus       158 ~~~~~i~~~~~~i~~~~~~~~~~  180 (217)
                      .++.+...+...+.+.+.+...+
T Consensus        80 ~~~~~~~~~~~~~~~~l~~~~~~  102 (273)
T d1puja_          80 VNGQGLNQIVPASKEILQEKFDR  102 (273)
T ss_dssp             TTCTTGGGHHHHHHHHHHHHHHH
T ss_pred             ccCCCccccchhhhhhhhhhhhh
Confidence            99999998888887776665443

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.25  E-value=4.8e-06  Score=59.24  Aligned_cols=90  Identities=12%  Similarity=0.082  Sum_probs=51.4

Q ss_pred             EEEEEEeCCChhhhhh-------hhhhhhc-----CCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 027856           62 VKAQIWDTAGQERYRA-------ITSAYYR-----GAVGALLVYDVTRHV-TFENVERWLKELRDHTDSNIVIMLVGNKA  128 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~-------~~~~~~~-----~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~  128 (217)
                      +.+.|+||+|......       ......+     ..+-.++|+|+.... ....+...+..+      + +--+++||.
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~------~-~~~lIlTKl  164 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV------G-LTGITLTKL  164 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS------C-CCEEEEECC
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc------C-CceEEEeec
Confidence            4689999999322111       1111222     246788899986543 333333333332      2 225789999


Q ss_pred             CCCCccCCCHHHHHHHHHHcCCcEEEEecCCCCCHH
Q 027856          129 DLRHLRAVSTEDATAFAERENTFFMETSALESMNVE  164 (217)
Q Consensus       129 D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  164 (217)
                      |...    ..=.+.......+.++..++  .|++++
T Consensus       165 De~~----~~G~~l~~~~~~~~Pi~~i~--~Gq~v~  194 (211)
T d2qy9a2         165 DGTA----KGGVIFSVADQFGIPIRYIG--VGERIE  194 (211)
T ss_dssp             TTCT----TTTHHHHHHHHHCCCEEEEE--CSSSGG
T ss_pred             CCCC----CccHHHHHHHHHCCCEEEEe--CCCCcc
Confidence            9744    23345667778888877777  444443

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.25  E-value=3e-06  Score=61.10  Aligned_cols=72  Identities=13%  Similarity=0.034  Sum_probs=40.7

Q ss_pred             CCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHHHHHHHHcC--CcEEEEecCCCC
Q 027856           85 GAVGALLVYDVTRHVTFENV-ERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAEREN--TFFMETSALESM  161 (217)
Q Consensus        85 ~~d~ii~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~  161 (217)
                      ..++++.++|+........- ..+..++...   +   ++|+||+|+..+    .+..++..+..+  +++++++ .-..
T Consensus       121 ~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~A---D---~ivlNK~Dl~~~----~~~~~~~l~~lNP~a~Ii~~~-~g~v  189 (222)
T d1nija1         121 LLDGVIALVDAVHADEQMNQFTIAQSQVGYA---D---RILLTKTDVAGE----AEKLHERLARINARAPVYTVT-HGDI  189 (222)
T ss_dssp             EEEEEEEEEETTTHHHHHHHCHHHHHHHHTC---S---EEEEECTTTCSC----THHHHHHHHHHCSSSCEEECC-SSCC
T ss_pred             cccchhhhhhhhhhhhhhhhhHHHHHHHHhC---C---cccccccccccH----HHHHHHHHHHHhCCCeEEEee-CCcc
Confidence            35789999999876432221 2233444322   1   688999999752    234555555543  5576544 2234


Q ss_pred             CHHHHH
Q 027856          162 NVENAF  167 (217)
Q Consensus       162 ~i~~~~  167 (217)
                      .+..+|
T Consensus       190 ~~~~ll  195 (222)
T d1nija1         190 DLGLLF  195 (222)
T ss_dssp             CGGGGS
T ss_pred             CHHHhh
Confidence            555544

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.25  E-value=9.5e-08  Score=69.05  Aligned_cols=23  Identities=43%  Similarity=0.657  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      ..+++|++|+|||||+|+|.+..
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC--
T ss_pred             eEEEECCCCccHHHHHHhhccHh
Confidence            45799999999999999999863

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.14  E-value=8.9e-06  Score=57.76  Aligned_cols=84  Identities=17%  Similarity=0.068  Sum_probs=48.6

Q ss_pred             EEEEEEeCCChhhhh----hhhhhh--hcCCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCcc
Q 027856           62 VKAQIWDTAGQERYR----AITSAY--YRGAVGALLVYDVTRHVT-FENVERWLKELRDHTDSNIVIMLVGNKADLRHLR  134 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~----~~~~~~--~~~~d~ii~v~d~~~~~s-~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~  134 (217)
                      ..+.|+||+|.....    ..+..+  ..+.+-+++|.|+..... .+.+..++..+.      . --+++||.|...  
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~~------~-~~~I~TKlDe~~--  163 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG------V-TGLVLTKLDGDA--  163 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTC------C-CEEEEECGGGCS--
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhCC------C-CeeEEeecCccc--
Confidence            478999999932211    111111  235678899999876542 222233333221      1 247899999643  


Q ss_pred             CCCHHHHHHHHHHcCCcEEEEe
Q 027856          135 AVSTEDATAFAERENTFFMETS  156 (217)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~S  156 (217)
                        ..-.+...+...+.++..++
T Consensus       164 --~~G~~l~~~~~~~~Pi~~i~  183 (207)
T d1ls1a2         164 --RGGAALSARHVTGKPIYFAG  183 (207)
T ss_dssp             --SCHHHHHHHHHHCCCEEEEC
T ss_pred             --cchHHHHHHHHHCCCEEEEe
Confidence              33446667777888866654

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.04  E-value=1e-06  Score=63.56  Aligned_cols=84  Identities=13%  Similarity=0.099  Sum_probs=60.1

Q ss_pred             hhcCCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCccCCCHHHH---HHHHHHcCCcEEEEec
Q 027856           82 YYRGAVGALLVYDVTRHV-TFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDA---TAFAERENTFFMETSA  157 (217)
Q Consensus        82 ~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~---~~~~~~~~~~~~~~Sa  157 (217)
                      ...++|.+++|+++.+|. ++..++.++-.....   +++.+||+||+|+.+..+ ..+.+   .+.....+.+++.+|+
T Consensus         7 ~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~---~i~pvIvlnK~DL~~~~~-~~~~~~~~~~~y~~~g~~v~~~Sa   82 (231)
T d1t9ha2           7 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN---DIQPIICITKMDLIEDQD-TEDTIQAYAEDYRNIGYDVYLTSS   82 (231)
T ss_dssp             TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT---TCEEEEEEECGGGCCCHH-HHHHHHHHHHHHHHHTCCEEECCH
T ss_pred             CccccCEEEEEEECCCCCCCHHHHHHHHHHHHHc---CCCEEEEEecccccccHH-HHHHHHHHHHHHhhccccceeeec
Confidence            457899999999988764 556667766666553   889999999999976321 11222   2334456889999999


Q ss_pred             CCCCCHHHHHHH
Q 027856          158 LESMNVENAFTE  169 (217)
Q Consensus       158 ~~~~~i~~~~~~  169 (217)
                      .++.|++++...
T Consensus        83 ~~~~gl~~L~~~   94 (231)
T d1t9ha2          83 KDQDSLADIIPH   94 (231)
T ss_dssp             HHHTTCTTTGGG
T ss_pred             CChhHHHHHHHh
Confidence            999988776554

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.71  E-value=7.5e-06  Score=56.64  Aligned_cols=26  Identities=23%  Similarity=0.393  Sum_probs=22.4

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ...=+|+|.|++|||||||+++|...
T Consensus         5 ~~~K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           5 FFAKTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             GTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHH
Confidence            34568999999999999999998864

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.66  E-value=9.3e-06  Score=55.51  Aligned_cols=24  Identities=33%  Similarity=0.576  Sum_probs=21.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .++|+++|+|||||||+.++|...
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            578999999999999999998754

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=2.2e-05  Score=58.27  Aligned_cols=60  Identities=18%  Similarity=0.161  Sum_probs=39.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCcCCCCC-----cccceeEeEEEEEEECCeEEEEEEEeCCCh
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLES-----KSTIGVEFATRSIRCDDKIVKAQIWDTAGQ   72 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   72 (217)
                      +..=|+|+|+.++|||+|+|.|++.......     ..|.|+-.....+ .++....+.++||.|.
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~-~~~~~~~~~~lDteG~   95 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPH-PKKPGHILVLLDTEGL   95 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEEC-SSSTTCEEEEEEECCB
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeec-cCCCCceEEEEecccc
Confidence            3557899999999999999999997753322     2233432211111 1344567899999994

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.64  E-value=1.3e-05  Score=54.63  Aligned_cols=23  Identities=26%  Similarity=0.351  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      +-|+|+|.+|||||||+++|...
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~   25 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPA   25 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            34899999999999999999864

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.64  E-value=1.6e-05  Score=54.36  Aligned_cols=26  Identities=15%  Similarity=0.380  Sum_probs=22.9

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      +..++|++.|++||||||+.+.|...
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            45689999999999999999998764

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.55  E-value=2.1e-05  Score=54.34  Aligned_cols=23  Identities=26%  Similarity=0.504  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ++|+|+|+|||||||+.+.|...
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAA   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999887653

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.51  E-value=3.1e-05  Score=54.17  Aligned_cols=27  Identities=30%  Similarity=0.583  Sum_probs=23.6

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      +...++|+|+|+|||||||+...|...
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHHH
Confidence            356789999999999999999998864

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.49  E-value=3.1e-05  Score=54.05  Aligned_cols=25  Identities=28%  Similarity=0.530  Sum_probs=21.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ..++|+++|+|||||||+.+.|...
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~   26 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKN   26 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHH
Confidence            4579999999999999999988753

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.49  E-value=2.8e-05  Score=51.98  Aligned_cols=21  Identities=33%  Similarity=0.547  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 027856           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~   36 (217)
                      |++.|.||||||||+++|...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            788999999999999998754

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.47  E-value=3.1e-05  Score=53.63  Aligned_cols=23  Identities=30%  Similarity=0.586  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ++|+++|+|||||||+.+.|...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999888864

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.47  E-value=2.4e-05  Score=54.56  Aligned_cols=24  Identities=21%  Similarity=0.313  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      +++|+++|++||||||+.+.|...
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            578999999999999999887654

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.46  E-value=3.4e-05  Score=53.38  Aligned_cols=23  Identities=26%  Similarity=0.619  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ++|+++|+|||||||+.+.|...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999998754

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.42  E-value=3.9e-05  Score=52.27  Aligned_cols=21  Identities=19%  Similarity=0.422  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 027856           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~   36 (217)
                      |+|+|.+|||||||+++|+..
T Consensus         4 i~I~G~~gSGKTTli~~l~~~   24 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVAA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHH
Confidence            469999999999999998764

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=4e-05  Score=52.87  Aligned_cols=23  Identities=17%  Similarity=0.397  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ++|+++|+|||||||+.+.|...
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999888653

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.38  E-value=4.5e-05  Score=51.89  Aligned_cols=22  Identities=32%  Similarity=0.551  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      -|++.|++||||||+.++|...
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3889999999999999998864

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.35  E-value=5.7e-05  Score=52.21  Aligned_cols=24  Identities=29%  Similarity=0.541  Sum_probs=21.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .++|+++|+|||||||+.+.|...
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            478999999999999999988754

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.33  E-value=7.5e-05  Score=52.13  Aligned_cols=25  Identities=24%  Similarity=0.381  Sum_probs=21.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .+.-|+|+|+|||||||+.++|...
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3467899999999999999998763

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=7.7e-05  Score=52.03  Aligned_cols=23  Identities=26%  Similarity=0.504  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhh
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      ++.|+|+|+|||||||+...|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998875

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.25  E-value=7.7e-05  Score=51.24  Aligned_cols=25  Identities=28%  Similarity=0.300  Sum_probs=21.5

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhh
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      +.+.=|+++|.|||||||++++++.
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4456789999999999999999864

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=3.6e-05  Score=53.28  Aligned_cols=21  Identities=29%  Similarity=0.664  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 027856           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~   36 (217)
                      |+++|++|+||+||+++|+..
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999999864

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.21  E-value=9.3e-05  Score=49.68  Aligned_cols=22  Identities=27%  Similarity=0.596  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .|+++|++||||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999988754

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.20  E-value=9.3e-05  Score=53.61  Aligned_cols=23  Identities=35%  Similarity=0.452  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .|+|+|++|||||||++.+.+-.
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            58999999999999999988754

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.19  E-value=0.00011  Score=51.63  Aligned_cols=22  Identities=27%  Similarity=0.489  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      .=|+++|.||||||||.++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999885

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.19  E-value=0.00015  Score=49.50  Aligned_cols=26  Identities=19%  Similarity=0.267  Sum_probs=21.8

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ...+-|.++|.+||||||+.+.|...
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~   29 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVT   29 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            44577899999999999999887754

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.19  E-value=7.5e-05  Score=50.80  Aligned_cols=23  Identities=39%  Similarity=0.566  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ++|+++|.+||||||+.+.|...
T Consensus         2 p~IvliG~~G~GKSTig~~La~~   24 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKA   24 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999998887644

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=8.6e-05  Score=50.90  Aligned_cols=22  Identities=36%  Similarity=0.641  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .|.+.|++|+|||||+..+...
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~   24 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999988764

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.14  E-value=0.0001  Score=50.93  Aligned_cols=21  Identities=43%  Similarity=0.591  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 027856           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~   36 (217)
                      |+++|++|||||||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            789999999999999999765

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.14  E-value=0.00012  Score=50.89  Aligned_cols=21  Identities=43%  Similarity=0.724  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 027856           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~   36 (217)
                      |+|+|++|||||||+++|+..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            799999999999999999765

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.12  E-value=0.00013  Score=50.18  Aligned_cols=20  Identities=30%  Similarity=0.358  Sum_probs=18.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhh
Q 027856           16 VVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~   35 (217)
                      |+|.|.+||||||+++.|..
T Consensus         4 I~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78899999999999998864

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.10  E-value=0.00018  Score=49.90  Aligned_cols=26  Identities=19%  Similarity=0.184  Sum_probs=22.2

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhh
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      ...++=|+|.|++|||||||.++|..
T Consensus        19 ~~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          19 TAGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34567799999999999999999875

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.08  E-value=0.00013  Score=49.44  Aligned_cols=22  Identities=36%  Similarity=0.631  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      +|+++|++||||||+.+.|...
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~   23 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKD   23 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999887654

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.08  E-value=0.00015  Score=52.56  Aligned_cols=24  Identities=33%  Similarity=0.404  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      =.++++|++|||||||++.+.+-.
T Consensus        29 e~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          29 SIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            368999999999999999988754

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.08  E-value=0.00014  Score=53.06  Aligned_cols=23  Identities=48%  Similarity=0.599  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .++|+|++|||||||++.+++-.
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            68999999999999999988654

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.07  E-value=0.00015  Score=49.29  Aligned_cols=21  Identities=29%  Similarity=0.515  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 027856           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~   36 (217)
                      |++.|++||||||+.+.|...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999888754

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.06  E-value=0.00044  Score=46.38  Aligned_cols=36  Identities=25%  Similarity=0.218  Sum_probs=25.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCcCC--CCCccccee
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNEFS--LESKSTIGV   48 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~   48 (217)
                      ..-|++-|+-|+|||||++.++...-.  ....||.+.
T Consensus        33 g~ii~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPTF~l   70 (158)
T d1htwa_          33 AIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTL   70 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTC
T ss_pred             CeEEEEecCCCccHHHHHHHHHhhcccccccCCCceEE
Confidence            456889999999999999988875322  234455443

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.00016  Score=49.02  Aligned_cols=22  Identities=41%  Similarity=0.533  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      =++++|.+||||||+.+.|...
T Consensus         8 iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           8 IYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3567999999999999998764

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.04  E-value=0.00016  Score=50.87  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .++++|+.|+|||||++.+++..
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            36899999999999999998755

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.03  E-value=0.00022  Score=52.09  Aligned_cols=27  Identities=26%  Similarity=0.327  Sum_probs=22.2

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      +.+--|++.|+||+|||||++++.+..
T Consensus        30 ~~P~~ilL~GpPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          30 ESPTAFLLGGQPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            334559999999999999999988643

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.00017  Score=52.50  Aligned_cols=23  Identities=26%  Similarity=0.385  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .++++|++|||||||++.+.+-.
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhccc
Confidence            68999999999999999988754

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.01  E-value=0.00018  Score=51.61  Aligned_cols=23  Identities=48%  Similarity=0.625  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -++++|+.|||||||++.+.+-.
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            37999999999999999888753

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.01  E-value=0.00025  Score=49.47  Aligned_cols=24  Identities=17%  Similarity=0.505  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ..-|+++|+|||||||+...|...
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999998763

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.00  E-value=0.00019  Score=49.42  Aligned_cols=23  Identities=35%  Similarity=0.564  Sum_probs=18.4

Q ss_pred             eEEE-EEcCCCCCHHHHHHHHhhC
Q 027856           14 FKVV-LIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~-v~G~~~~GKSsli~~l~~~   36 (217)
                      +||+ |.|.+||||||+++.|...
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~~   24 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            3565 5699999999999988643

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.00  E-value=0.00018  Score=51.64  Aligned_cols=23  Identities=35%  Similarity=0.483  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCcchhhHhccCCC
Confidence            47999999999999999777654

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.98  E-value=0.0002  Score=49.85  Aligned_cols=21  Identities=52%  Similarity=0.782  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 027856           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~   36 (217)
                      |+|+|++|||||||+++|...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999998764

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.98  E-value=0.0002  Score=53.01  Aligned_cols=23  Identities=26%  Similarity=0.440  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .++|+|+.|+|||||++.+++-.
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            58999999999999999998754

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.97  E-value=0.00022  Score=48.48  Aligned_cols=21  Identities=29%  Similarity=0.493  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 027856           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~   36 (217)
                      |+|.|.+||||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            566799999999999998865

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.94  E-value=0.0029  Score=45.41  Aligned_cols=24  Identities=21%  Similarity=0.295  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .++++.|++|+||||+++.+....
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhh
Confidence            468999999999999999888753

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.92  E-value=0.00025  Score=51.12  Aligned_cols=22  Identities=36%  Similarity=0.516  Sum_probs=19.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCc
Q 027856           16 VVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      ++++|+.|||||||++.+.+-.
T Consensus        27 ~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCChHHHHHHHHHcCC
Confidence            5789999999999999999854

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.92  E-value=0.00025  Score=51.09  Aligned_cols=23  Identities=39%  Similarity=0.540  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -++++|+.|||||||++.+.+-.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            37999999999999999988764

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=96.90  E-value=0.0079  Score=43.62  Aligned_cols=88  Identities=11%  Similarity=0.083  Sum_probs=51.6

Q ss_pred             EEEEEEeCCChhhhhh-hhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcC-CCCc-EEEEEeCCCCCCccCCCH
Q 027856           62 VKAQIWDTAGQERYRA-ITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTD-SNIV-IMLVGNKADLRHLRAVST  138 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~-~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p-~ivv~nK~D~~~~~~~~~  138 (217)
                      +.+.++|||+...... ........+|.++++.+. +..++..+......+..... .+.+ .-++.|+.+...    ..
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~----~~  190 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN----EY  190 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC----CH
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCC----cc
Confidence            4789999987432222 222233557888887776 55666655555555544332 2333 347889987644    34


Q ss_pred             HHHHHHHHHcCCcEEE
Q 027856          139 EDATAFAERENTFFME  154 (217)
Q Consensus       139 ~~~~~~~~~~~~~~~~  154 (217)
                      +..+++.+..+.+++.
T Consensus       191 ~~~~~~~~~~~~~~~~  206 (269)
T d1cp2a_         191 ELLDAFAKELGSQLIH  206 (269)
T ss_dssp             HHHHHHHHHHTCCEEE
T ss_pred             chhhhhHhhcCCeEEE
Confidence            5566677777766544

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.90  E-value=0.00026  Score=49.95  Aligned_cols=22  Identities=27%  Similarity=0.483  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      =|+|+|++|||||||+++|+..
T Consensus         4 livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            3789999999999999999875

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.87  E-value=0.00027  Score=49.25  Aligned_cols=22  Identities=18%  Similarity=0.493  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      -|.++|+|||||||+..+|...
T Consensus        10 iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999998763

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.87  E-value=0.00028  Score=50.84  Aligned_cols=23  Identities=35%  Similarity=0.533  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -++++|+.|||||||++.+.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            47999999999999999988764

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.86  E-value=0.0003  Score=47.88  Aligned_cols=20  Identities=20%  Similarity=0.566  Sum_probs=18.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhh
Q 027856           16 VVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~   35 (217)
                      |+++|.+||||||+.+.|..
T Consensus         5 Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999988864

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.86  E-value=0.00018  Score=52.46  Aligned_cols=23  Identities=39%  Similarity=0.520  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .++|+|++|||||||++.+.+-.
T Consensus        46 ~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHhcC
Confidence            68999999999999998877643

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.00027  Score=50.97  Aligned_cols=23  Identities=39%  Similarity=0.442  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCc
Confidence            47999999999999999988754

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.82  E-value=0.00022  Score=51.25  Aligned_cols=22  Identities=41%  Similarity=0.661  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      -++++|+.|+|||||++.+.+-
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            3789999999999999999873

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.81  E-value=0.0002  Score=51.29  Aligned_cols=22  Identities=27%  Similarity=0.507  Sum_probs=20.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCc
Q 027856           16 VVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      ++++|+.|||||||++.+.+-.
T Consensus        29 ~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          29 FVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCc
Confidence            7999999999999999999865

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.81  E-value=0.00036  Score=50.19  Aligned_cols=24  Identities=29%  Similarity=0.549  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ...+++.|+||+||||+++.+.+.
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999998764

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.81  E-value=0.00031  Score=50.74  Aligned_cols=23  Identities=39%  Similarity=0.508  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -++++|+.|+|||||++.+.+-.
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            36899999999999999999865

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.0004  Score=48.31  Aligned_cols=25  Identities=32%  Similarity=0.594  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~   38 (217)
                      -+++++|+||+|||+++..|...-.
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~ri~   68 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHHHHH
Confidence            4789999999999999998776543

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.79  E-value=0.00046  Score=52.13  Aligned_cols=24  Identities=21%  Similarity=0.390  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -+|+|.|.+|||||||+++|++.-
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCEEEEeeccccchHHHHHHhhhc
Confidence            469999999999999999998643

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.00044  Score=48.80  Aligned_cols=24  Identities=21%  Similarity=0.371  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ++-|+|.|.+|||||||.+.|...
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~   25 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQL   25 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            467999999999999999988653

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.74  E-value=0.00037  Score=50.03  Aligned_cols=24  Identities=33%  Similarity=0.522  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ...+++.|+||+||||+++.+...
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHhc
Confidence            346899999999999999988764

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.73  E-value=0.00039  Score=50.13  Aligned_cols=24  Identities=29%  Similarity=0.299  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~   38 (217)
                      -++++|+.|+|||||++.+.+-..
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            368999999999999999998653

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.00026  Score=48.97  Aligned_cols=25  Identities=28%  Similarity=0.258  Sum_probs=21.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ...-|.++|.+||||||+.+.|...
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~   42 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEY   42 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4567889999999999999988654

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.72  E-value=0.00041  Score=50.66  Aligned_cols=23  Identities=39%  Similarity=0.538  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -++++|+.|||||||++.+.+-.
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            47999999999999999998754

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.69  E-value=0.00051  Score=50.37  Aligned_cols=25  Identities=28%  Similarity=0.492  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~   38 (217)
                      -++++||++|+|||++++.|...-.
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~ri~   64 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWRIV   64 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHHHH
Confidence            4789999999999999998776543

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.67  E-value=0.00052  Score=48.62  Aligned_cols=24  Identities=17%  Similarity=0.378  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .+.|+|-|++||||||+...|...
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~~   26 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAKD   26 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            478999999999999999988763

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.63  E-value=0.00049  Score=50.14  Aligned_cols=22  Identities=36%  Similarity=0.543  Sum_probs=20.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCc
Q 027856           16 VVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      ++++|+.|+|||||++.+.+-.
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHHCCC
Confidence            6999999999999999999864

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.63  E-value=0.00055  Score=47.57  Aligned_cols=27  Identities=30%  Similarity=0.525  Sum_probs=22.9

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ...++-|+|-|..||||||+++.|...
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            345678999999999999999988754

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.59  E-value=0.00088  Score=46.30  Aligned_cols=25  Identities=20%  Similarity=0.255  Sum_probs=21.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .++-|+|.|.+||||||+.+.|...
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHC
Confidence            4678999999999999999988654

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.59  E-value=0.00088  Score=48.51  Aligned_cols=25  Identities=28%  Similarity=0.428  Sum_probs=21.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      +.-.|++.|+||+|||+|++.+.+.
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhhc
Confidence            3567999999999999999998753

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.57  E-value=0.00078  Score=48.90  Aligned_cols=27  Identities=22%  Similarity=0.308  Sum_probs=22.6

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      ...-.+++.|++|+|||++++.+....
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~~l   67 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWELY   67 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            345579999999999999999888654

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.56  E-value=0.00028  Score=50.93  Aligned_cols=23  Identities=22%  Similarity=0.497  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            47999999999999999998754

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.52  E-value=0.0011  Score=47.83  Aligned_cols=27  Identities=19%  Similarity=0.319  Sum_probs=22.5

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .....+++.|++|+||||+++.+.+..
T Consensus        50 ~~~~~lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          50 GVFRAAMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             TSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            344578999999999999999998643

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.47  E-value=0.00086  Score=47.82  Aligned_cols=24  Identities=25%  Similarity=0.418  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      ..+++.|++|+||||+++.+...-
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHH
Confidence            358999999999999999887643

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.43  E-value=0.00081  Score=50.43  Aligned_cols=23  Identities=30%  Similarity=0.684  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      -.|+++|+||+|||.|.+++...
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhc
Confidence            46899999999999999998864

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.39  E-value=0.0009  Score=48.85  Aligned_cols=23  Identities=26%  Similarity=0.303  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -+.+.|+||+|||++++.+...-
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            34566999999999999988653

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.35  E-value=0.001  Score=46.94  Aligned_cols=22  Identities=27%  Similarity=0.459  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      =|+|.|+|||||||+...|...
T Consensus         5 iI~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4788899999999999888764

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.28  E-value=0.0011  Score=48.27  Aligned_cols=21  Identities=19%  Similarity=0.262  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 027856           15 KVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~   35 (217)
                      .|+|.|++|+|||||++++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            578999999999999999875

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.26  E-value=0.0012  Score=47.77  Aligned_cols=23  Identities=35%  Similarity=0.570  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      -.|++.|++|+|||+|++++.+.
T Consensus        43 ~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHHH
Confidence            35899999999999999999863

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.24  E-value=0.0013  Score=45.86  Aligned_cols=22  Identities=23%  Similarity=0.502  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      -|+|-|..||||||+++.|...
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~   23 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGA   23 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999987753

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.20  E-value=0.0011  Score=52.22  Aligned_cols=21  Identities=33%  Similarity=0.849  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 027856           15 KVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~   35 (217)
                      +|+++|++|||||-|+++|..
T Consensus        51 NILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            899999999999999999876

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.18  E-value=0.002  Score=48.08  Aligned_cols=28  Identities=18%  Similarity=0.282  Sum_probs=22.7

Q ss_pred             CCCCeeeEEEEEcCCCCCHHHHHHHHhh
Q 027856            8 DDYDYLFKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus         8 ~~~~~~~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      .....++=|+|.|.+|||||||.+.|..
T Consensus        75 ~~~k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          75 NGQRIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             C-CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCCCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            3345678999999999999999887754

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.09  E-value=0.0016  Score=46.38  Aligned_cols=22  Identities=23%  Similarity=0.566  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .+++.|++|+||||+++.+...
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHH
Confidence            4899999999999999998864

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.05  E-value=0.0017  Score=47.17  Aligned_cols=24  Identities=25%  Similarity=0.409  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .-.+++.|+||+|||++++.+...
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHHH
Confidence            345899999999999999998853

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.04  E-value=0.0018  Score=47.14  Aligned_cols=24  Identities=21%  Similarity=0.355  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      +-.|++.|+||+|||++++++...
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceeEEecCCCCCchHHHHHHHHH
Confidence            346999999999999999998864

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.96  E-value=0.002  Score=45.61  Aligned_cols=22  Identities=18%  Similarity=0.504  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ++++.|++|+||||+++.+...
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHHH
Confidence            5899999999999999887754

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.96  E-value=0.0028  Score=44.53  Aligned_cols=26  Identities=27%  Similarity=0.295  Sum_probs=21.9

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ....-|.+.|.||||||||.+.|...
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~   47 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQ   47 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            44567999999999999999998754

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.91  E-value=0.0022  Score=45.47  Aligned_cols=23  Identities=22%  Similarity=0.522  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      ++++.|++|+||||+++.+....
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~l   59 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAREI   59 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHHh
Confidence            58999999999999999988653

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.79  E-value=0.0023  Score=46.74  Aligned_cols=25  Identities=24%  Similarity=0.312  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .-.|++.|++|+|||+|++++.+..
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHh
Confidence            3459999999999999999987644

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.78  E-value=0.0042  Score=45.75  Aligned_cols=25  Identities=20%  Similarity=0.194  Sum_probs=20.8

Q ss_pred             CCeeeEEEEEcCCCCCHHHHHHHHh
Q 027856           10 YDYLFKVVLIGDSGVGKSNLLSRFT   34 (217)
Q Consensus        10 ~~~~~~I~v~G~~~~GKSsli~~l~   34 (217)
                      ...++=|+|.|.+|||||||...+.
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHH
Confidence            3456889999999999999987654

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.72  E-value=0.0028  Score=44.36  Aligned_cols=21  Identities=24%  Similarity=0.389  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 027856           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~   36 (217)
                      |++-|..||||||+++.|...
T Consensus         5 IviEG~dGsGKsT~~~~L~~~   25 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVET   25 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            788899999999999987753

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.68  E-value=0.0019  Score=49.81  Aligned_cols=23  Identities=35%  Similarity=0.670  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      =++++||+||+|||+|+..|...
T Consensus        44 ~n~llvG~~GvGKtaiv~~la~~   66 (387)
T d1qvra2          44 NNPVLIGEPGVGKTAIVEGLAQR   66 (387)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHHH
T ss_pred             CCCeEECCCCCCHHHHHHHHHHH
Confidence            35699999999999999765543

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.59  E-value=0.005  Score=43.06  Aligned_cols=24  Identities=33%  Similarity=0.519  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      +-|+|.|..||||||+.+.|....
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~G   27 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADLG   27 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEECCCcCCHHHHHHHHHHCC
Confidence            458999999999999999876544

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.56  E-value=0.0055  Score=42.72  Aligned_cols=22  Identities=36%  Similarity=0.581  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      +-|+|.|..||||||+.+.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999987764

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.54  E-value=0.071  Score=38.79  Aligned_cols=88  Identities=13%  Similarity=0.112  Sum_probs=46.4

Q ss_pred             EEEEEEeCCChhhhhhhhhh-hhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhc-CCCCcE-EEEEeCCCCCCccCCCH
Q 027856           62 VKAQIWDTAGQERYRAITSA-YYRGAVGALLVYDVTRHVTFENVERWLKELRDHT-DSNIVI-MLVGNKADLRHLRAVST  138 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~-~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~p~-ivv~nK~D~~~~~~~~~  138 (217)
                      +.+.++|+|+.......... ....++.++++... +..+...+......+.... ..+.++ .+|.|+.+...    ..
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~-~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~----~~  193 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSG-EMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDR----ED  193 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECS-SHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTT----HH
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecccch-hHHHHHHHHHHHHHHHhhhhcccccccceeehhhcchh----hH
Confidence            57789999874322222211 22356666666553 4555555555555444322 223443 47889876433    23


Q ss_pred             HHHHHHHHHcCCcEEE
Q 027856          139 EDATAFAERENTFFME  154 (217)
Q Consensus       139 ~~~~~~~~~~~~~~~~  154 (217)
                      +...++.+..+..++.
T Consensus       194 ~~~~~~~~~~g~~vl~  209 (289)
T d2afhe1         194 ELIIALANKLGTQMIH  209 (289)
T ss_dssp             HHHHHHHHHHTSCEEE
T ss_pred             HHHHHHHHHcCCeEEE
Confidence            3455666666766554

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.0025  Score=45.41  Aligned_cols=22  Identities=23%  Similarity=0.431  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .|+|-|..||||||+++.|...
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999987764

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.0043  Score=43.55  Aligned_cols=20  Identities=30%  Similarity=0.414  Sum_probs=17.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhh
Q 027856           16 VVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~   35 (217)
                      |++-|..||||||+++.|..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999998887655

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.40  E-value=0.0021  Score=47.33  Aligned_cols=21  Identities=29%  Similarity=0.547  Sum_probs=15.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 027856           15 KVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~   35 (217)
                      =|+|.|.+||||||+.++|..
T Consensus         6 IIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            399999999999999998764

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.35  E-value=0.0022  Score=48.36  Aligned_cols=21  Identities=33%  Similarity=0.618  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 027856           15 KVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~   35 (217)
                      +|+++|+||+|||+|++++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            589999999999999999864

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.28  E-value=0.005  Score=45.14  Aligned_cols=23  Identities=35%  Similarity=0.472  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .-|+|.|.+|+|||||+..+.+.
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            45789999999999999998764

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.25  E-value=0.0068  Score=41.19  Aligned_cols=25  Identities=36%  Similarity=0.579  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~   38 (217)
                      .-|++.|++|+||||+.-.|.....
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g~   39 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRGH   39 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            4589999999999999999887654

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.21  E-value=0.0057  Score=42.45  Aligned_cols=24  Identities=13%  Similarity=0.192  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCcC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~~   38 (217)
                      =+.|.|+||+|||+|...|+.+-.
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~~   48 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTCQ   48 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            368999999999999998876543

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.11  E-value=0.0058  Score=46.61  Aligned_cols=23  Identities=17%  Similarity=0.150  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      --+++.|+||+|||+|...+.+.
T Consensus       155 ~~~~~~g~~~~gk~~~~~~~~~~  177 (362)
T d1svma_         155 RYWLFKGPIDSGKTTLAAALLEL  177 (362)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999988753

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=94.96  E-value=0.068  Score=38.68  Aligned_cols=21  Identities=19%  Similarity=0.262  Sum_probs=18.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 027856           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~   36 (217)
                      +.+.|++++|||+|+-.+...
T Consensus        60 tei~G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          60 TEIYGPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEecCCccchHHHHHHHHHH
Confidence            578999999999998877754

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.94  E-value=0.0071  Score=43.04  Aligned_cols=22  Identities=27%  Similarity=0.552  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      -|+|-|..||||||+++.|...
T Consensus         4 ~IviEG~~GsGKST~~~~L~~~   25 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            5889999999999999988764

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=94.94  E-value=0.0088  Score=40.65  Aligned_cols=25  Identities=32%  Similarity=0.493  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~   38 (217)
                      .-|++.|++|+||||+.-.|.....
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G~   40 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKNH   40 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTTC
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcCC
Confidence            4589999999999999999886543

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.92  E-value=0.0065  Score=43.06  Aligned_cols=23  Identities=26%  Similarity=0.283  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -+.|.|+||+|||+|+..|...-
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            46899999999999999887553

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.88  E-value=0.0078  Score=45.24  Aligned_cols=26  Identities=23%  Similarity=0.416  Sum_probs=22.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      ..++|.|=|.-|+||||+++.|....
T Consensus         4 ~~lrI~IEG~iGsGKSTl~~~L~~~l   29 (331)
T d1osna_           4 GVLRIYLDGAYGIGKTTAAEEFLHHF   29 (331)
T ss_dssp             EEEEEEEEESSSSCTTHHHHHHHHTT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHH
Confidence            46899999999999999999988654

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=94.83  E-value=0.0069  Score=46.23  Aligned_cols=23  Identities=26%  Similarity=0.537  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhh
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      .-+++++|++|||||-|.++|..
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceeeeCCCCccHHHHHHHHHh
Confidence            45699999999999999999865

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.80  E-value=0.011  Score=44.49  Aligned_cols=25  Identities=24%  Similarity=0.317  Sum_probs=22.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      ..++|.|=|.-|+||||+++.|...
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHH
Confidence            4689999999999999999988764

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.78  E-value=0.008  Score=42.88  Aligned_cols=23  Identities=22%  Similarity=0.317  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -+.|.|+||+|||+|.-.++.+.
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            46899999999999998887654

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.71  E-value=0.0096  Score=44.49  Aligned_cols=21  Identities=24%  Similarity=0.493  Sum_probs=17.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 027856           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~   36 (217)
                      +++.|+||+|||.|++.+.+.
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            445799999999999998864

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=94.65  E-value=0.011  Score=44.41  Aligned_cols=24  Identities=25%  Similarity=0.426  Sum_probs=21.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhh
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      ..++|.|=|.-|+||||+++.|..
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             CceEEEEECCcCCCHHHHHHHHHH
Confidence            467899999999999999998864

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.65  E-value=0.011  Score=39.94  Aligned_cols=25  Identities=32%  Similarity=0.558  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCcC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~~~   38 (217)
                      .-|++.|++|+||||+.-.|.....
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            4689999999999999988887654

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=94.64  E-value=0.009  Score=46.21  Aligned_cols=22  Identities=27%  Similarity=0.379  Sum_probs=20.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCc
Q 027856           16 VVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      |+|.|++||||||.+..++...
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~~  182 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQEL  182 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhhhh
Confidence            8999999999999999998754

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.62  E-value=0.014  Score=43.50  Aligned_cols=23  Identities=22%  Similarity=0.531  Sum_probs=19.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhh
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      .-.++++|++|+|||.|++.|..
T Consensus        52 ~~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          52 VGSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCcchhHHHHHHHHh
Confidence            33689999999999999998775

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=94.59  E-value=0.0017  Score=44.76  Aligned_cols=18  Identities=39%  Similarity=0.704  Sum_probs=16.1

Q ss_pred             EEEcCCCCCHHHHHHHHh
Q 027856           17 VLIGDSGVGKSNLLSRFT   34 (217)
Q Consensus        17 ~v~G~~~~GKSsli~~l~   34 (217)
                      +|+|+.|+|||||+.++.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            578999999999999875

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.54  E-value=0.01  Score=42.13  Aligned_cols=22  Identities=41%  Similarity=0.721  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      -++|.|+||+|||+|+..+..+
T Consensus        28 l~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4689999999999999988765

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.52  E-value=0.011  Score=41.52  Aligned_cols=22  Identities=27%  Similarity=0.545  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCc
Q 027856           16 VVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      +.+.|++|+|||.|++++....
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~   60 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEA   60 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            7899999999999999988654

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.42  E-value=0.011  Score=41.40  Aligned_cols=21  Identities=14%  Similarity=0.286  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 027856           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~   36 (217)
                      |++-|..||||||+++.|...
T Consensus         6 I~iEG~DGsGKST~~~~L~~~   26 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYKK   26 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            889999999999999887653

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.33  E-value=0.0084  Score=44.23  Aligned_cols=19  Identities=32%  Similarity=0.718  Sum_probs=16.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 027856           14 FKVVLIGDSGVGKSNLLSRF   33 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l   33 (217)
                      ++ +++|+.|+||||++.++
T Consensus        26 ln-vlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          26 VT-AIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EE-EEECCTTTCSTHHHHHH
T ss_pred             eE-EEECCCCCcHHHHHHHH
Confidence            44 78999999999999987

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.18  E-value=0.015  Score=40.55  Aligned_cols=22  Identities=18%  Similarity=0.383  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCc
Q 027856           16 VVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      +++.|++|+||||+++.+...-
T Consensus        27 lLl~Gp~G~GKtt~a~~~a~~l   48 (207)
T d1a5ta2          27 LLIQALPGMGDDALIYALSRYL   48 (207)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHhc
Confidence            8999999999999999877643

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.15  E-value=0.014  Score=41.35  Aligned_cols=23  Identities=22%  Similarity=0.273  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -+.|.|++|+|||+|+..+..+-
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            36899999999999999887643

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.02  E-value=0.016  Score=41.14  Aligned_cols=23  Identities=17%  Similarity=0.216  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCc
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      -+.|.|++|+|||+|...|+...
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999888643

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.02  E-value=0.016  Score=41.25  Aligned_cols=22  Identities=23%  Similarity=0.516  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .+++.|++|+|||++++.+...
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~~   57 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAKG   57 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            3788999999999999987653

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=93.92  E-value=0.017  Score=40.94  Aligned_cols=21  Identities=19%  Similarity=0.175  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 027856           15 KVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~   35 (217)
                      -|++.|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998865

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.83  E-value=0.015  Score=44.67  Aligned_cols=22  Identities=36%  Similarity=0.670  Sum_probs=18.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHh
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFT   34 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~   34 (217)
                      ..++ +|+|+.|+|||+|+.++.
T Consensus        25 ~~l~-~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          25 SNFT-SIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             CSEE-EEECSTTSSHHHHHHHHH
T ss_pred             CCEE-EEECCCCCCHHHHHHHHH
Confidence            3455 588999999999999873

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=93.79  E-value=0.014  Score=40.43  Aligned_cols=23  Identities=26%  Similarity=0.264  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      --+++.|++++|||.|+..++.-
T Consensus        54 n~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          54 NCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHHHH
Confidence            46899999999999999887654

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.61  E-value=0.02  Score=40.14  Aligned_cols=21  Identities=29%  Similarity=0.463  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 027856           15 KVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~   35 (217)
                      -+.|.|++|+|||+|...++.
T Consensus        28 ~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            468899999999999877654

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.49  E-value=0.017  Score=44.69  Aligned_cols=25  Identities=28%  Similarity=0.409  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .-+++|+|.+|+|||+++..++.+.
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~~~   74 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAYTG   74 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHHHHH
Confidence            4569999999999999988776543

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=93.41  E-value=0.023  Score=41.18  Aligned_cols=20  Identities=25%  Similarity=0.504  Sum_probs=17.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhh
Q 027856           16 VVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~   35 (217)
                      +++.|.||+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            67999999999999887764

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.37  E-value=0.087  Score=38.11  Aligned_cols=20  Identities=15%  Similarity=0.282  Sum_probs=17.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhh
Q 027856           16 VVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~   35 (217)
                      +.+.|++++|||+|+-.+..
T Consensus        63 ~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          63 IEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHH
Confidence            57899999999999876664

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.85  E-value=0.36  Score=33.35  Aligned_cols=76  Identities=16%  Similarity=0.115  Sum_probs=49.4

Q ss_pred             EEEEEEeCCChhhhhhhhhhhhcCCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCccCCCHHH
Q 027856           62 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIM-LVGNKADLRHLRAVSTED  140 (217)
Q Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p~i-vv~nK~D~~~~~~~~~~~  140 (217)
                      +.+.++|+++....  .....+..+|.++++...+ ..+...+......+.+.   +.|++ +|+|+.+..+ .....+.
T Consensus       112 ~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~---~~~~~giv~N~~~~~~-~~~~~~~  184 (237)
T d1g3qa_         112 FDFILIDCPAGLQL--DAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA---GLAILGFVLNRYGRSD-RDIPPEA  184 (237)
T ss_dssp             CSEEEEECCSSSSH--HHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT---TCEEEEEEEEEETSCT-TCCCHHH
T ss_pred             CCEEEEcccccccc--cchhhhhhhhccccccccc-ceecchhhHHHHHHhhh---hhhhhhhhhccccccc-chhhhHH
Confidence            58899999985432  3334566799999998864 55566666666666543   66654 8899998654 3344444


Q ss_pred             HHHH
Q 027856          141 ATAF  144 (217)
Q Consensus       141 ~~~~  144 (217)
                      .+.+
T Consensus       185 ~~~~  188 (237)
T d1g3qa_         185 AEDV  188 (237)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            4433

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=92.70  E-value=0.022  Score=41.69  Aligned_cols=15  Identities=20%  Similarity=0.665  Sum_probs=13.0

Q ss_pred             EEEEcCCCCCHHHHH
Q 027856           16 VVLIGDSGVGKSNLL   30 (217)
Q Consensus        16 I~v~G~~~~GKSsli   30 (217)
                      ++|+|.+|+||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            678999999999764

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=92.57  E-value=0.034  Score=40.08  Aligned_cols=20  Identities=30%  Similarity=0.413  Sum_probs=17.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhh
Q 027856           16 VVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~   35 (217)
                      .+|.|.+|+|||+|+-.+..
T Consensus        32 ~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            56999999999999877654

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=92.34  E-value=0.029  Score=41.38  Aligned_cols=15  Identities=27%  Similarity=0.747  Sum_probs=13.2

Q ss_pred             EEEEcCCCCCHHHHH
Q 027856           16 VVLIGDSGVGKSNLL   30 (217)
Q Consensus        16 I~v~G~~~~GKSsli   30 (217)
                      ++|.|.+||||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            789999999999764

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=92.22  E-value=0.046  Score=40.00  Aligned_cols=25  Identities=16%  Similarity=0.244  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCc
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      .=|++|+|.+|+|||+|+..+..+.
T Consensus        43 GQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          43 GQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             TCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             CCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            3589999999999999998877643

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.17  E-value=0.057  Score=40.10  Aligned_cols=22  Identities=27%  Similarity=0.631  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 027856           15 KVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      .++++|++|+|||.+.+.|...
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~   76 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAAT   76 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHH
Confidence            5788899999999999977654

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=91.85  E-value=0.051  Score=39.36  Aligned_cols=25  Identities=20%  Similarity=0.304  Sum_probs=20.8

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhh
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      ...--+.+.|++++|||+|++.+..
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHH
Confidence            3455688999999999999998775

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.81  E-value=0.057  Score=33.90  Aligned_cols=28  Identities=18%  Similarity=0.135  Sum_probs=23.6

Q ss_pred             CeeeEEEEEcCCCCCHHHHHHHHhhCcC
Q 027856           11 DYLFKVVLIGDSGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        11 ~~~~~I~v~G~~~~GKSsli~~l~~~~~   38 (217)
                      ...+.|.+-|..|+|||+|.++|.....
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l~   31 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTFL   31 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            4568899999999999999999876543

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=91.39  E-value=0.058  Score=40.82  Aligned_cols=19  Identities=26%  Similarity=0.581  Sum_probs=15.8

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 027856           15 KVVLIGDSGVGKSNLLSRF   33 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l   33 (217)
                      -.+|.|+||+|||+++.++
T Consensus       165 ~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHHH
Confidence            4688999999999988553

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=91.22  E-value=0.33  Score=32.47  Aligned_cols=102  Identities=15%  Similarity=0.167  Sum_probs=56.5

Q ss_pred             CeeeEEEEEcC-CCCCHHHHHHHHhhCcCCCCCcccceeEeEEEEEEECCeEEEEEEEeCCChhhh-h------------
Q 027856           11 DYLFKVVLIGD-SGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERY-R------------   76 (217)
Q Consensus        11 ~~~~~I~v~G~-~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-~------------   76 (217)
                      ...+||+|+|. .+.|-+ |+.+|..+......                 ..+.+.++|.+..... .            
T Consensus        22 k~~~kV~I~GA~G~Ig~~-l~~~La~g~v~g~~-----------------~~i~L~L~di~~~~~~l~g~~mdl~d~a~~   83 (175)
T d7mdha1          22 KKLVNIAVSGAAGMISNH-LLFKLASGEVFGQD-----------------QPIALKLLGSERSFQALEGVAMELEDSLYP   83 (175)
T ss_dssp             CCCEEEEEETTTSHHHHH-HHHHHHHTTTTCTT-----------------CCEEEEEECCGGGHHHHHHHHHHHHTTTCT
T ss_pred             CCCcEEEEECCCcHHHHH-HHHHHHcCcccCCC-----------------ceEEEEEecCccccchhcchhhhhcccccc
Confidence            46789999996 667755 55566655432111                 1246778887763211 0            


Q ss_pred             --------hhhhhhhcCCcEEEEEEECCCh--hhHHH--------HHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 027856           77 --------AITSAYYRGAVGALLVYDVTRH--VTFEN--------VERWLKELRDHTDSNIVIMLVGNKADL  130 (217)
Q Consensus        77 --------~~~~~~~~~~d~ii~v~d~~~~--~s~~~--------~~~~~~~l~~~~~~~~p~ivv~nK~D~  130 (217)
                              ......+.++|+++++......  .+..+        ++.+...+..+..++..+++|.|-.|.
T Consensus        84 ~~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~  155 (175)
T d7mdha1          84 LLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNT  155 (175)
T ss_dssp             TEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             cccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHH
Confidence                    0112335788988888655431  12211        234455555555445667777776663

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.51  E-value=0.095  Score=38.00  Aligned_cols=23  Identities=39%  Similarity=0.595  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      =|++++|.+|+|||+|+..+..+
T Consensus        69 Qr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          69 GKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEeeCCCCCCHHHHHHHHHHH
Confidence            47999999999999998888754

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.05  E-value=0.12  Score=36.81  Aligned_cols=22  Identities=32%  Similarity=0.560  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 027856           14 FKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        14 ~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      .-|+|.|.+|+||+.+.+.+-.
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHHH
Confidence            3479999999999999988754

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=89.04  E-value=0.13  Score=37.09  Aligned_cols=22  Identities=23%  Similarity=0.329  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCc
Q 027856           16 VVLIGDSGVGKSNLLSRFTRNE   37 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~~   37 (217)
                      +.+.|++|+|||+|+-.+...-
T Consensus        57 tei~G~~gsGKTtl~l~~~~~~   78 (263)
T d1u94a1          57 VEIYGPESSGKTTLTLQVIAAA   78 (263)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHHHH
Confidence            5799999999999987766543

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.89  E-value=0.39  Score=31.29  Aligned_cols=24  Identities=17%  Similarity=0.223  Sum_probs=17.4

Q ss_pred             eeeEEEEEcC-CCCCHHHHHHHHhhC
Q 027856           12 YLFKVVLIGD-SGVGKSNLLSRFTRN   36 (217)
Q Consensus        12 ~~~~I~v~G~-~~~GKSsli~~l~~~   36 (217)
                      .++||+|+|. .++|.+... .|..+
T Consensus         2 ~p~KV~IiGA~G~VG~~la~-~l~~~   26 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLY-SIGNG   26 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHH-HHHTT
T ss_pred             CceEEEEECCCCHHHHHHHH-HHHHH
Confidence            4689999995 789987655 44443

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=86.97  E-value=0.72  Score=29.89  Aligned_cols=26  Identities=27%  Similarity=0.433  Sum_probs=18.5

Q ss_pred             eeeEEEEEcC-CCCCHHHHHHHHhhCcC
Q 027856           12 YLFKVVLIGD-SGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        12 ~~~~I~v~G~-~~~GKSsli~~l~~~~~   38 (217)
                      .++||+|+|. .++|- ++...|..+..
T Consensus         3 ~p~KV~IiGA~G~VG~-~~a~~l~~~~l   29 (154)
T d1y7ta1           3 APVRVAVTGAAGQIGY-SLLFRIAAGEM   29 (154)
T ss_dssp             CCEEEEESSTTSHHHH-HHHHHHHTTTT
T ss_pred             CCCEEEEECCCCHHHH-HHHHHHHhccc
Confidence            5689999996 78995 55556655544

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=86.56  E-value=0.17  Score=32.01  Aligned_cols=21  Identities=24%  Similarity=0.197  Sum_probs=16.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 027856           15 KVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~~   35 (217)
                      ..+|.+++|+|||.++-.++.
T Consensus        10 ~~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1          10 VAHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             EEEEECCTTSCTTTHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            457799999999998765543

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=85.75  E-value=0.25  Score=35.60  Aligned_cols=20  Identities=25%  Similarity=0.492  Sum_probs=15.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 027856           15 KVVLIGDSGVGKSNLLSRFT   34 (217)
Q Consensus        15 ~I~v~G~~~~GKSsli~~l~   34 (217)
                      =|.+.|..|+||||+.-.+.
T Consensus        10 ~i~~sGKGGVGKTTvaa~lA   29 (296)
T d1ihua1          10 YLFFTGKGGVGKTSISCATA   29 (296)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCcChHHHHHHHHH
Confidence            35679999999999755433

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=85.50  E-value=0.25  Score=35.38  Aligned_cols=18  Identities=33%  Similarity=0.807  Sum_probs=13.7

Q ss_pred             EEEEcCCCCCHHHHHHHH
Q 027856           16 VVLIGDSGVGKSNLLSRF   33 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l   33 (217)
                      |++.|..|+||||+.-.|
T Consensus        23 ii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          23 IMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            355599999999985443

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=85.30  E-value=0.18  Score=37.04  Aligned_cols=14  Identities=50%  Similarity=0.750  Sum_probs=12.9

Q ss_pred             EEEcCCCCCHHHHH
Q 027856           17 VLIGDSGVGKSNLL   30 (217)
Q Consensus        17 ~v~G~~~~GKSsli   30 (217)
                      +++|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (313)
T d2olra1          18 VFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEECSTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            69999999999975

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=84.99  E-value=0.3  Score=33.28  Aligned_cols=21  Identities=19%  Similarity=0.320  Sum_probs=16.8

Q ss_pred             EEEEEcCC-CCCHHHHHHHHhh
Q 027856           15 KVVLIGDS-GVGKSNLLSRFTR   35 (217)
Q Consensus        15 ~I~v~G~~-~~GKSsli~~l~~   35 (217)
                      |+.|.|.. |+||||+.-.|..
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La~   24 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALLQ   24 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHHH
Confidence            67899995 9999999765543

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=84.35  E-value=0.2  Score=36.90  Aligned_cols=14  Identities=50%  Similarity=0.750  Sum_probs=13.0

Q ss_pred             EEEcCCCCCHHHHH
Q 027856           17 VLIGDSGVGKSNLL   30 (217)
Q Consensus        17 ~v~G~~~~GKSsli   30 (217)
                      +++|.+|+|||||-
T Consensus        18 lffGLSGTGKTTLs   31 (318)
T d1j3ba1          18 VFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEECTTSCHHHHT
T ss_pred             EEEccCCCCccccc
Confidence            89999999999974

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=84.26  E-value=0.29  Score=32.94  Aligned_cols=21  Identities=19%  Similarity=0.371  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 027856           16 VVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~~   36 (217)
                      |+|+|...||||.+..++...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            689999999999999998754

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.19  E-value=0.22  Score=36.17  Aligned_cols=24  Identities=25%  Similarity=0.318  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      --|++++|.+|+|||+|+..+..+
T Consensus        68 GQr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          68 GQRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             TCBCEEEESTTSSHHHHHHHHHHH
T ss_pred             CCEEEeecCCCCChHHHHHHHHHh
Confidence            457899999999999998776644

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=84.11  E-value=0.35  Score=32.99  Aligned_cols=24  Identities=4%  Similarity=0.001  Sum_probs=21.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhh
Q 027856           12 YLFKVVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        12 ~~~~I~v~G~~~~GKSsli~~l~~   35 (217)
                      ....+++.|++|+|||+++..+..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998776

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=83.84  E-value=0.23  Score=36.59  Aligned_cols=14  Identities=50%  Similarity=0.750  Sum_probs=13.0

Q ss_pred             EEEcCCCCCHHHHH
Q 027856           17 VLIGDSGVGKSNLL   30 (217)
Q Consensus        17 ~v~G~~~~GKSsli   30 (217)
                      +++|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (323)
T d1ii2a1          18 VFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEECCTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            69999999999986

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.27  E-value=3.9  Score=25.93  Aligned_cols=23  Identities=26%  Similarity=0.522  Sum_probs=17.4

Q ss_pred             EEEEEcC-CCCCHHHHHHHHhhCcC
Q 027856           15 KVVLIGD-SGVGKSNLLSRFTRNEF   38 (217)
Q Consensus        15 ~I~v~G~-~~~GKSsli~~l~~~~~   38 (217)
                      ||+|+|. ..+| +++...+..+..
T Consensus         2 Kv~IiGA~G~VG-~~~A~~l~~~~~   25 (144)
T d1mlda1           2 KVAVLGASGGIG-QPLSLLLKNSPL   25 (144)
T ss_dssp             EEEEETTTSTTH-HHHHHHHHTCTT
T ss_pred             eEEEECCCChHH-HHHHHHHHhCCc
Confidence            7999995 8999 666777765553

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.07  E-value=0.39  Score=33.73  Aligned_cols=20  Identities=20%  Similarity=0.333  Sum_probs=17.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhh
Q 027856           16 VVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~   35 (217)
                      ++|.|+..+||||+++.+.-
T Consensus        44 ~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHHH
Confidence            58999999999999997543

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=82.30  E-value=0.43  Score=33.28  Aligned_cols=20  Identities=30%  Similarity=0.448  Sum_probs=17.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhh
Q 027856           16 VVLIGDSGVGKSNLLSRFTR   35 (217)
Q Consensus        16 I~v~G~~~~GKSsli~~l~~   35 (217)
                      ++|.|+..+||||+++.+.-
T Consensus        38 ~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhHH
Confidence            68999999999999997554

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=81.16  E-value=0.37  Score=34.79  Aligned_cols=24  Identities=25%  Similarity=0.336  Sum_probs=19.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 027856           13 LFKVVLIGDSGVGKSNLLSRFTRN   36 (217)
Q Consensus        13 ~~~I~v~G~~~~GKSsli~~l~~~   36 (217)
                      --|++++|.+|+|||+|+..+...
T Consensus        67 GQr~~Ifg~~g~GKt~l~~~~~~~   90 (276)
T d1fx0a3          67 GQRELIIGDRQTGKTAVATDTILN   90 (276)
T ss_dssp             TCBCBEEESSSSSHHHHHHHHHHT
T ss_pred             CceEeeccCCCCChHHHHHHHHhh
Confidence            347899999999999998765544