Citrus Sinensis ID: 027863

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------
Protein Sequence
MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGFGGQASPRWSI
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHcHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccccccHccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
maslaasstpaasigakemlgnplnvssavrtsapgasnpstfkpvalfskkkaappakskpvavspvneelakwygpdrriflpeglldrseipeyltgevpgdygydpfglskkpddfskYQAYELIHARWAMLGaagfiipeafnkfgancgpeavwFKTGAllldgntlnyfgknipiNLVFAVIAEIVLVGGAEyyritngfggqasprwsi
Flexible Loop (DISEMBL)
maslaasstpaasigakemlGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKkaappakskpvavspvneelakwygpdrRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRItngfggqasprwsi
Low Complexity Region (SEG)
MaslaasstpaasIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFskkkaappakskpvavspvNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGFGGQASPRWSI
Disordered region (IsUnstruct)
**********************************************************************ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGFG*********
Disordered Region (DISOPRED)
********************************************************************************RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGFGGQA***WS*
Disordered Region (DISEMBL)
************SIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSK***************PVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGFGGQASPRWSI
Disordered Region (DISPRO)
************************************************************************AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGFGGQASPRWS*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGFGGQASPRWSI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	217	2.2.26 [Sep-21-2011]
Q9XF89	280	Chlorophyll a-b binding p	yes	no	0.889	0.689	0.795	7e-72
P27517	253	Chlorophyll a-b binding p	N/A	no	0.714	0.612	0.406	2e-26
P12330	265	Chlorophyll a-b binding p	no	no	0.811	0.664	0.403	3e-25
P22686	256	Chlorophyll a-b binding p	N/A	no	0.741	0.628	0.404	5e-25
P27490	268	Chlorophyll a-b binding p	N/A	no	0.788	0.638	0.408	9e-25
P04782	266	Chlorophyll a-b binding p	N/A	no	0.635	0.518	0.430	3e-24
P06671	265	Chlorophyll a-b binding p	N/A	no	0.589	0.483	0.474	3e-24
P15194	274	Chlorophyll a-b binding p	N/A	no	0.686	0.543	0.404	3e-24
P07371	269	Chlorophyll a-b binding p	N/A	no	0.718	0.579	0.418	3e-24
P15193	278	Chlorophyll a-b binding p	N/A	no	0.589	0.460	0.451	5e-24

>sp|Q9XF89|CB5_ARATH Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1

 Score =  270 bits (689), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 156/196 (79%), Positives = 172/196 (87%), Gaps = 3/196 (1%)

Query: 12  ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEE 71
           AS+G  EMLG PLN  +  R+SAP AS+PSTFK VALFSKKK A    +K  AVS  ++E
Sbjct: 2   ASLGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPA---PAKSKAVSETSDE 58

Query: 72  LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHA 131
           LAKWYGPDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+KYQA+ELIHA
Sbjct: 59  LAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHA 118

Query: 132 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE 191
           RWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE
Sbjct: 119 RWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAE 178

Query: 192 IVLVGGAEYYRITNGF 207
           +VL+GGAEYYRITNG 
Sbjct: 179 VVLLGGAEYYRITNGL 194

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.
Arabidopsis thaliana (taxid: 3702)

>sp|P27517|CB2_DUNTE Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1

 Score =  119 bits (297), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/160 (40%), Positives = 91/160 (56%), Gaps = 5/160 (3%)

Query: 50  SKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYD 109
           S  KA    +++   ++ V     ++YGPDR  FL  G    ++ PEYLTGE PGDYG+D
Sbjct: 8   SGLKALNIRQTRQQRMATVPRAAVEFYGPDRAKFL--GPFSENDTPEYLTGEFPGDYGWD 65

Query: 110 PFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD 169
             GLS  P  F++Y+  ELIHARWA+LGA G + PE  +++      E VWFK GA +  
Sbjct: 66  TAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFA 125

Query: 170 GNTLNYFGKNIPIN---LVFAVIAEIVLVGGAEYYRITNG 206
              LNY G    I+   ++  +  ++VL+G AE YR   G
Sbjct: 126 DGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGG 165

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.

Dunaliella tertiolecta (taxid: 3047)

>sp|P12330|CB21_ORYSJ Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2

 Score =  115 bits (287), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 104/191 (54%), Gaps = 15/191 (7%)

Query: 19  MLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
           M    + +SS V   A  +++ + F    +  +K AA P   KP A S      + WYG 
Sbjct: 1   MAAATMALSSPVMARAAPSTSSALFGEARITMRKTAAKP---KPAASSG-----SPWYGA 52

Query: 79  DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
           DR ++L  G L   E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA
Sbjct: 53  DRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 109

Query: 139 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLV 195
            G + PE   + G   G EAVWFK G+ +     L+Y G    I    + A+ A ++VL+
Sbjct: 110 LGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLM 168

Query: 196 GGAEYYRITNG 206
           G  E YRI  G
Sbjct: 169 GAVEGYRIAGG 179

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P22686|CB2_CHLMO Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1

 Score =  114 bits (285), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 68/168 (40%), Positives = 91/168 (54%), Gaps = 7/168 (4%)

Query: 47  ALFSKKKAAPPAK-SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGD 105
           AL  K +AA  A  +K    +P      +WYGPDR  +L       +  P YLTGE PGD
Sbjct: 10  ALTVKVEAAKKAAGTKQTKAAPAKSAGIEWYGPDRAKWLGP---FSTNTPAYLTGEFPGD 66

Query: 106 YGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGA 165
           YG+D  GLS  P+ F KY+  E+IHARWA+LGA G + PE  + +      E VWFK GA
Sbjct: 67  YGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGA 126

Query: 166 LLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNGFGGQ 210
            +     L+Y G    I   N+V  +  ++VL+G  E YR+  G  G+
Sbjct: 127 QIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGE 174

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.

Chlamydomonas moewusii (taxid: 3054)

>sp|P27490|CB28_PEA Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1

 Score =  113 bits (283), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 105/191 (54%), Gaps = 20/191 (10%)

Query: 20  LGNPLNVSSAVRTSAPGASNPSTFK-PVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
           L +P      V TSA    NPS+ +   A F+ +K+A    +K VA S      + WYGP
Sbjct: 8   LSSPTLTGKPVETSA----NPSSQELGGARFTMRKSA---TTKKVASSG-----SPWYGP 55

Query: 79  DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
           DR  +L        E P YLTGE PGDYG+D  GLS  P+ FSK +  E+IH+RWAMLGA
Sbjct: 56  DRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGA 112

Query: 139 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLV 195
            G + PE  ++ G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+
Sbjct: 113 LGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILM 171

Query: 196 GGAEYYRITNG 206
           G  E YRI  G
Sbjct: 172 GAVEGYRIAGG 182

May channel protons produced in the catalytic Mn center of water oxidation into the thylakoid lumen.

Pisum sativum (taxid: 3888)

>sp|P04782|CB24_PETSP Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1

 Score =  112 bits (279), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/151 (43%), Positives = 86/151 (56%), Gaps = 13/151 (8%)

Query: 59  KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
           K+KPV+        + WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+
Sbjct: 40  KAKPVSSG------SPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPE 90

Query: 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 178
            F+K +  E+IH RWAMLGA G + PE F + G   G EAVWFK G+ +     L+Y G 
Sbjct: 91  TFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFG-EAVWFKAGSQIFSEGGLDYLGN 149

Query: 179 N--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
              +    + A+ A ++VL+G  E YR+  G
Sbjct: 150 PSLVHAQSILAIWACQVVLMGAVEGYRVAGG 180

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.

Petunia sp. (taxid: 4104)

>sp|P06671|CB22_MAIZE Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1

 Score =  111 bits (278), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 64/135 (47%), Positives = 81/135 (60%), Gaps = 7/135 (5%)

Query: 75  WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
           WYGPDR ++L  G L   E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWA
Sbjct: 49  WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105

Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
           MLGA G + PE   + G   G EAVWFK G+ +     L+Y G    I    + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 164

Query: 192 IVLVGGAEYYRITNG 206
           +VL+G  E YRI  G
Sbjct: 165 VVLMGAVEGYRIAGG 179

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.

Zea mays (taxid: 4577)

>sp|P15194|CB2B_PINSY Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1

 Score =  111 bits (278), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 89/163 (54%), Gaps = 14/163 (8%)

Query: 47  ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
           A  + +KA     +   + SP       WYGPDR ++L        E P YLTGE PGDY
Sbjct: 37  ARVTMRKATTKKLTASASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 86

Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 166
           G+D  GLS  P++F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK GA 
Sbjct: 87  GWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 145

Query: 167 LLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
           +     L+Y G    +    + A+ A +++L+G  E YRI  G
Sbjct: 146 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGG 188

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.

Pinus sylvestris (taxid: 3349)

>sp|P07371|CB22_PEA Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1

 Score =  111 bits (278), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/172 (41%), Positives = 98/172 (56%), Gaps = 16/172 (9%)

Query: 39  NPSTFK-PVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEY 97
           NPS+ +   A F+ +K+A    +K VA S      + WYGPDR  +L        E P Y
Sbjct: 24  NPSSQELGAARFTMRKSA---TTKKVASSG-----SPWYGPDRVKYLGP---FSGESPSY 72

Query: 98  LTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE 157
           LTGE PGDYG+D  GLS  P+ FSK +  E+IH+RWAMLGA G + PE  ++ G   G E
Sbjct: 73  LTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-E 131

Query: 158 AVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 206
           AVWFK G+ +     L+Y G    +    + A+ A +++L+G  E YRI  G
Sbjct: 132 AVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGG 183

May channel protons produced in the catalytic Mn center of water oxidation into the thylakoid lumen.

Pisum sativum (taxid: 3888)

>sp|P15193|CB2A_PINSY Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1

 Score =  111 bits (277), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 61/135 (45%), Positives = 81/135 (60%), Gaps = 7/135 (5%)

Query: 75  WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
           WYGPDR ++L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWA
Sbjct: 62  WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 118

Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-E 191
           MLGA G + PE   + G   G EAVWFK GA +     L+Y G  + I    + A+ A +
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQ 177

Query: 192 IVLVGGAEYYRITNG 206
           ++L+G  E YR+  G
Sbjct: 178 VILMGAIEGYRVAGG 192

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.

Pinus sylvestris (taxid: 3349)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
255557841	292	chlorophyll A/B binding protein, putativ	0.949	0.705	0.840	1e-88
224127848	290	light-harvesting complex II protein Lhcb	0.884	0.662	0.845	1e-85
118489770	302	unknown [Populus trichocarpa x Populus d	0.884	0.635	0.845	1e-85
225459918	290	PREDICTED: chlorophyll a-b binding prote	0.880	0.658	0.854	1e-85
356535308	287	PREDICTED: chlorophyll a-b binding prote	0.926	0.700	0.811	4e-84
255638437	287	unknown [Glycine max]	0.926	0.700	0.806	1e-83
356576567	288	PREDICTED: chlorophyll a-b binding prote	0.926	0.697	0.807	2e-82
261351266	287	chloroplast pigment-binding protein CP26	0.907	0.686	0.803	7e-80
1644289	283	chlorophyll a/b-binding protein CP26 in	0.898	0.689	0.771	2e-79
449447521	288	PREDICTED: chlorophyll a-b binding prote	0.870	0.656	0.803	2e-78

>gi|255557841|ref|XP_002519950.1| chlorophyll A/B binding protein, putative [Ricinus communis] gi|223540996|gb|EEF42554.1| chlorophyll A/B binding protein, putative [Ricinus communis]

 Score =  331 bits (849), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 174/207 (84%), Positives = 187/207 (90%), Gaps = 1/207 (0%)

Query: 1   MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKS 60
           MASLAAS   A S+G  EMLGNPLN S A R++AP +S PST K VALFSKKKAAPP K+
Sbjct: 1   MASLAASRA-AGSLGVSEMLGNPLNFSGATRSAAPTSSTPSTLKTVALFSKKKAAPPPKA 59

Query: 61  KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
           KP AVSPV++ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP+DF
Sbjct: 60  KPAAVSPVDDELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDF 119

Query: 121 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI 180
           +KYQAYELIHARWAMLGAAGFI+PEAFNKFGANCGPEAVWFKTGALLLDG TLNYFG +I
Sbjct: 120 AKYQAYELIHARWAMLGAAGFIVPEAFNKFGANCGPEAVWFKTGALLLDGGTLNYFGNSI 179

Query: 181 PINLVFAVIAEIVLVGGAEYYRITNGF 207
           PINLV AVIAE+VL+GGAEYYRI NG 
Sbjct: 180 PINLVVAVIAEVVLLGGAEYYRIINGL 206

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127848|ref|XP_002329192.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa] gi|118487642|gb|ABK95646.1| unknown [Populus trichocarpa] gi|222870973|gb|EEF08104.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]

 Score =  321 bits (823), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 164/194 (84%), Positives = 175/194 (90%), Gaps = 2/194 (1%)

Query: 15  GAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK 74
           G  EMLGNPLN S A R+++P AS P+TFK VALFSKKK A   K KP AVSP + ELAK
Sbjct: 14  GVSEMLGNPLNFSGATRSASPAASTPATFKTVALFSKKKPA--PKPKPSAVSPADVELAK 71

Query: 75  WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
           WYGPDRRIFLP+GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF KYQA+ELIHARWA
Sbjct: 72  WYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFEKYQAFELIHARWA 131

Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
           MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE++L
Sbjct: 132 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVIL 191

Query: 195 VGGAEYYRITNGFG 208
           VGGAEY+RITNG G
Sbjct: 192 VGGAEYFRITNGLG 205

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489770|gb|ABK96685.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  321 bits (823), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 164/194 (84%), Positives = 176/194 (90%), Gaps = 2/194 (1%)

Query: 15  GAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK 74
           G  EMLGNPLN S A R+++P A+ P+TFK VALFSKKKAA   K KP AVSP + ELAK
Sbjct: 14  GVSEMLGNPLNFSGATRSASPAATTPATFKTVALFSKKKAA--PKPKPSAVSPADVELAK 71

Query: 75  WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
           WYGPDRRIFLP+GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF KYQA+ELIHARWA
Sbjct: 72  WYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFEKYQAFELIHARWA 131

Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
           MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE++L
Sbjct: 132 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVIL 191

Query: 195 VGGAEYYRITNGFG 208
           VGGAEY+RITNG G
Sbjct: 192 VGGAEYFRITNGLG 205

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459918|ref|XP_002264295.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Vitis vinifera] gi|147770824|emb|CAN76428.1| hypothetical protein VITISV_023565 [Vitis vinifera] gi|297734735|emb|CBI16969.3| unnamed protein product [Vitis vinifera]

 Score =  321 bits (822), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 165/193 (85%), Positives = 173/193 (89%), Gaps = 2/193 (1%)

Query: 15  GAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK 74
           G  EMLGNPLN S A RT AP AS+P+TFK VALFSKKKAAP        VSP +EELAK
Sbjct: 14  GVSEMLGNPLNFSGASRT-APSASSPATFKTVALFSKKKAAPAKAKP-APVSPADEELAK 71

Query: 75  WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
           WYGPDRRIFLPEGLLDRSEIP YLTGEVPGDYGYDPFGLSKKP+DF+KYQAYELIHARWA
Sbjct: 72  WYGPDRRIFLPEGLLDRSEIPAYLTGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWA 131

Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
           MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL+FAV+AE+VL
Sbjct: 132 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLIFAVVAEVVL 191

Query: 195 VGGAEYYRITNGF 207
           VGGAEYYRI NG 
Sbjct: 192 VGGAEYYRIINGL 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535308|ref|XP_003536189.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like [Glycine max]

 Score =  316 bits (809), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 168/207 (81%), Positives = 180/207 (86%), Gaps = 6/207 (2%)

Query: 1   MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKS 60
           MASLAAS+         E+LGNP+N+  A R SAP  + P+TFK VALFSKKK APP K 
Sbjct: 1   MASLAASTA-----AMSEILGNPVNLRCATR-SAPSPTTPATFKTVALFSKKKPAPPPKK 54

Query: 61  KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
           KP AVSP NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP+DF
Sbjct: 55  KPAAVSPANEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDF 114

Query: 121 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI 180
           +KYQA+ELIHARWAMLGAAGFIIPEAFNK+GANCGPEAVWFKTGALLLDG TLNYFGK I
Sbjct: 115 AKYQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPI 174

Query: 181 PINLVFAVIAEIVLVGGAEYYRITNGF 207
           PINL+ AV+AEIVLVGGAEYYRI NG 
Sbjct: 175 PINLILAVVAEIVLVGGAEYYRIINGL 201

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638437|gb|ACU19528.1| unknown [Glycine max]

 Score =  314 bits (805), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 167/207 (80%), Positives = 179/207 (86%), Gaps = 6/207 (2%)

Query: 1   MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKS 60
           MASLAAS+         E+LGNP+N+  A R SAP  + P+TFK VALFSKKK APP K 
Sbjct: 1   MASLAASTA-----AMSEILGNPVNLRCATR-SAPSPTTPATFKTVALFSKKKPAPPPKK 54

Query: 61  KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
           KP AVSP NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP+DF
Sbjct: 55  KPAAVSPANEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDF 114

Query: 121 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI 180
           +KYQA+ELIHARWAMLGAAGFIIPEAFNK+GANCGPEAVWFKTGALLLDG TLNYFGK I
Sbjct: 115 AKYQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPI 174

Query: 181 PINLVFAVIAEIVLVGGAEYYRITNGF 207
           PIN + AV+AEIVLVGGAEYYRI NG 
Sbjct: 175 PINFILAVVAEIVLVGGAEYYRIINGL 201

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576567|ref|XP_003556402.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like [Glycine max]

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 168/208 (80%), Positives = 178/208 (85%), Gaps = 7/208 (3%)

Query: 1   MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKS 60
           MASLAAS+         EMLGNP+++  A R SAP  S P TFK VALFSKKKAAPP   
Sbjct: 1   MASLAASTA-----AMSEMLGNPVSLRGATR-SAPSPSTPVTFKTVALFSKKKAAPPPPK 54

Query: 61  KPVA-VSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 119
           K  A VSP NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP+D
Sbjct: 55  KKPAAVSPANEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPED 114

Query: 120 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 179
           F+KYQA+ELIHARWAMLGAAGFIIPEAFNK+GANCGPEAVWFKTGALLLDG TLNYFGK 
Sbjct: 115 FAKYQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP 174

Query: 180 IPINLVFAVIAEIVLVGGAEYYRITNGF 207
           IPINL+ AV+AEIVLVGGAEYYRI NG 
Sbjct: 175 IPINLIVAVVAEIVLVGGAEYYRIINGL 202

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|261351266|gb|ACX71300.1| chloroplast pigment-binding protein CP26 [Capsicum annuum]

 Score =  302 bits (773), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 159/198 (80%), Positives = 173/198 (87%), Gaps = 1/198 (0%)

Query: 11  AASIGAKEMLGNPLNVSSAVRTSAPG-ASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVN 69
           A S+   EMLG+P+  S   R +AP  AS+P+TFK VALF KK AA P K+K  A SP++
Sbjct: 4   ATSLYVSEMLGSPVKFSGVARPAAPTPASSPATFKTVALFKKKSAAAPVKAKAAAASPLD 63

Query: 70  EELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 129
           +ELAKWYGPDRRIFLPEGLLD+SEIPEYL GEVPGDYGYDPFGLSKKP+DF+KYQAYELI
Sbjct: 64  DELAKWYGPDRRIFLPEGLLDKSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELI 123

Query: 130 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVI 189
           HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTL YFGKNIPINLV AVI
Sbjct: 124 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLYYFGKNIPINLVLAVI 183

Query: 190 AEIVLVGGAEYYRITNGF 207
           AE+VLVGGAEYYRI NG 
Sbjct: 184 AEVVLVGGAEYYRIINGL 201

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1644289|emb|CAA65042.1| chlorophyll a/b-binding protein CP26 in PS II [Brassica juncea]

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 152/197 (77%), Positives = 166/197 (84%), Gaps = 2/197 (1%)

Query: 11  AASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNE 70
           A S+G  EMLG PLN  +  R SAP AS P+TFK VALFSKKK A     K   VS  N+
Sbjct: 3   ATSLGVSEMLGTPLNFRAVSRPSAPLASIPATFKTVALFSKKKPA--PPPKAKTVSAAND 60

Query: 71  ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 130
           ELAKWYGPDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+KYQA+ELIH
Sbjct: 61  ELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIH 120

Query: 131 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 190
           ARWAMLGAAG IIPEA NK+GANCGPEAVWFKTGALLLDGNTL+YFGKNIPINLV AV+ 
Sbjct: 121 ARWAMLGAAGCIIPEALNKYGANCGPEAVWFKTGALLLDGNTLSYFGKNIPINLVLAVVG 180

Query: 191 EIVLVGGAEYYRITNGF 207
           E+VL+GGAEYYRITNG 
Sbjct: 181 EVVLLGGAEYYRITNGL 197

Source: Brassica juncea

Species: Brassica juncea

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447521|ref|XP_004141516.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like [Cucumis sativus] gi|449510691|ref|XP_004163735.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like [Cucumis sativus]

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 155/193 (80%), Positives = 164/193 (84%), Gaps = 4/193 (2%)

Query: 15  GAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK 74
           G  EML NPL+ SS    SAP  S P+TFK VALF KK AAP       A   VN+ELAK
Sbjct: 14  GVSEMLRNPLSFSS---RSAPSPSTPATFKTVALFGKKPAAPAKPKPSAASP-VNDELAK 69

Query: 75  WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
           WYGPDRRIFLP+GLLDRSEIPEYL GEVPGDYGYDPFGLSKKP+DF+KYQA+ELIHARWA
Sbjct: 70  WYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFTKYQAFELIHARWA 129

Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
           MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG NIPINL+ AVIAE+VL
Sbjct: 130 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLIVAVIAEVVL 189

Query: 195 VGGAEYYRITNGF 207
           VGGAEYYRI NG 
Sbjct: 190 VGGAEYYRIINGL 202

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
TAIR|locus:2122794	280	LHCB5 "light harvesting comple	0.875	0.678	0.751	2.4e-76
UNIPROTKB|P12330	265	CAB1R "Chlorophyll a-b binding	0.589	0.483	0.466	1.8e-25
UNIPROTKB|P12331	261	CAB2R "Chlorophyll a-b binding	0.589	0.490	0.466	1.8e-25
TAIR|locus:2044988	265	LHCB2.2 "photosystem II light	0.589	0.483	0.474	5.9e-25
TAIR|locus:2042148	265	LHCB2.1 "photosystem II light	0.589	0.483	0.474	5.9e-25
TAIR|locus:2089139	266	LHCB2.3 "photosystem II light	0.589	0.481	0.474	5.9e-25
TAIR|locus:2019287	267	CAB3 "chlorophyll A/B binding	0.612	0.498	0.432	3.3e-24
TAIR|locus:2019372	267	CAB2 "chlorophyll A/B-binding	0.612	0.498	0.432	3.3e-24
TAIR|locus:2019322	267	CAB1 "chlorophyll A/B binding	0.612	0.498	0.432	3.3e-24
TAIR|locus:2162540	265	LHCB3 "light-harvesting chloro	0.603	0.494	0.449	1.1e-23

TAIR|locus:2122794 LHCB5 "light harvesting complex of photosystem II 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 769 (275.8 bits), Expect = 2.4e-76, P = 2.4e-76
 Identities = 145/193 (75%), Positives = 160/193 (82%)

Query:    14 IGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFXXXXXXXXXXXXXXXXXXXNEELA 73
             +G  EMLG PLN  +  R+SAP AS+PSTFK VALF                   ++ELA
Sbjct:     4 LGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPAPAKSKAVSET---SDELA 60

Query:    74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
             KWYGPDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+KYQA+ELIHARW
Sbjct:    61 KWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARW 120

Query:   134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV 193
             AMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE+V
Sbjct:   121 AMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVV 180

Query:   194 LVGGAEYYRITNG 206
             L+GGAEYYRITNG
Sbjct:   181 LLGGAEYYRITNG 193

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009533 "chloroplast stromal thylakoid" evidence=IDA

GO:0009765 "photosynthesis, light harvesting" evidence=IEA

GO:0015979 "photosynthesis" evidence=ISS;IMP

GO:0016020 "membrane" evidence=IEA;IDA

GO:0016168 "chlorophyll binding" evidence=ISS

GO:0030076 "light-harvesting complex" evidence=ISS

GO:0009783 "photosystem II antenna complex" evidence=IMP

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0010196 "nonphotochemical quenching" evidence=IMP

GO:0009579 "thylakoid" evidence=IDA

GO:0009637 "response to blue light" evidence=IEP;RCA

GO:0010114 "response to red light" evidence=IEP;RCA

GO:0010218 "response to far red light" evidence=IEP;RCA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0009517 "PSII associated light-harvesting complex II" evidence=IDA

UNIPROTKB|P12330 CAB1R "Chlorophyll a-b binding protein 1, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 63/135 (46%), Positives = 82/135 (60%)

Query:    75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
             WYG DR ++L  G L   E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWA
Sbjct:    49 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105

Query:   135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-E 191
             MLGA G + PE   + G   G EAVWFK G+ +     L+Y G    I+   + A+ A +
Sbjct:   106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQ 164

Query:   192 IVLVGGAEYYRITNG 206
             +VL+G  E YRI  G
Sbjct:   165 VVLMGAVEGYRIAGG 179

GO:0009535 "chloroplast thylakoid membrane" evidence=ISS

GO:0015979 "photosynthesis" evidence=ISS

UNIPROTKB|P12331 CAB2R "Chlorophyll a-b binding protein 2, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 63/135 (46%), Positives = 82/135 (60%)

Query:    75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
             WYG DR ++L  G L   E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWA
Sbjct:    45 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 101

Query:   135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-E 191
             MLGA G + PE   + G   G EAVWFK G+ +     L+Y G    I+   + A+ A +
Sbjct:   102 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQ 160

Query:   192 IVLVGGAEYYRITNG 206
             +VL+G  E YRI  G
Sbjct:   161 VVLMGAVEGYRIAGG 175

GO:0009535 "chloroplast thylakoid membrane" evidence=ISS

GO:0015979 "photosynthesis" evidence=ISS

TAIR|locus:2044988 LHCB2.2 "photosystem II light harvesting complex gene 2.2" [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 64/135 (47%), Positives = 81/135 (60%)

Query:    75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
             WYGPDR  +L  G    +  P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWA
Sbjct:    49 WYGPDRPKYL--GPFSENT-PSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105

Query:   135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK-N-IPINLVFAVIA-E 191
             MLGA G   PE  +K G   G EAVWFK G+ +     L+Y G  N I    + A+ A +
Sbjct:   106 MLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQ 164

Query:   192 IVLVGGAEYYRITNG 206
             +VL+G  E YRI  G
Sbjct:   165 VVLMGFIEGYRIGGG 179

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009765 "photosynthesis, light harvesting" evidence=IEA

GO:0015979 "photosynthesis" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0016168 "chlorophyll binding" evidence=ISS

GO:0030076 "light-harvesting complex" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

TAIR|locus:2042148 LHCB2.1 "photosystem II light harvesting complex gene 2.1" [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 64/135 (47%), Positives = 81/135 (60%)

Query:    75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
             WYGPDR  +L  G    +  P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWA
Sbjct:    49 WYGPDRPKYL--GPFSENT-PSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105

Query:   135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK-N-IPINLVFAVIA-E 191
             MLGA G   PE  +K G   G EAVWFK G+ +     L+Y G  N I    + A+ A +
Sbjct:   106 MLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQ 164

Query:   192 IVLVGGAEYYRITNG 206
             +VL+G  E YRI  G
Sbjct:   165 VVLMGFIEGYRIGGG 179

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009765 "photosynthesis, light harvesting" evidence=IEA

GO:0015979 "photosynthesis" evidence=ISS

GO:0016020 "membrane" evidence=IEA;IDA

GO:0016168 "chlorophyll binding" evidence=ISS

GO:0030076 "light-harvesting complex" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009637 "response to blue light" evidence=IEP

GO:0010114 "response to red light" evidence=IEP

GO:0010218 "response to far red light" evidence=IEP

GO:0005794 "Golgi apparatus" evidence=RCA

TAIR|locus:2089139 LHCB2.3 "photosystem II light harvesting complex gene 2.3" [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 64/135 (47%), Positives = 81/135 (60%)

Query:    75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
             WYGPDR  +L  G    +  P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWA
Sbjct:    50 WYGPDRPKYL--GPFSENT-PSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 106

Query:   135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK-N-IPINLVFAVIA-E 191
             MLGA G   PE  +K G   G EAVWFK G+ +     L+Y G  N I    + A+ A +
Sbjct:   107 MLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQ 165

Query:   192 IVLVGGAEYYRITNG 206
             +VL+G  E YRI  G
Sbjct:   166 VVLMGFIEGYRIGGG 180

GO:0009507 "chloroplast" evidence=ISM

GO:0009765 "photosynthesis, light harvesting" evidence=IEA

GO:0015979 "photosynthesis" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0016168 "chlorophyll binding" evidence=ISS

GO:0030076 "light-harvesting complex" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009637 "response to blue light" evidence=IEP;RCA

GO:0010114 "response to red light" evidence=IEP;RCA

GO:0010218 "response to far red light" evidence=IEP;RCA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

TAIR|locus:2019287 CAB3 "chlorophyll A/B binding protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 61/141 (43%), Positives = 84/141 (59%)

Query:    75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
             WYG DR  +L  G     E P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH+RWA
Sbjct:    50 WYGSDRVKYL--GPFS-GESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 106

Query:   135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-E 191
             MLGA G + PE   + G   G EAVWFK G+ +     L+Y G    ++   + A+ A +
Sbjct:   107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 165

Query:   192 IVLVGGAEYYRIT-NGFGGQA 211
             ++L+G  E YR+  NG  G+A
Sbjct:   166 VILMGAVEGYRVAGNGPLGEA 186

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009765 "photosynthesis, light harvesting" evidence=IEA

GO:0015979 "photosynthesis" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0016168 "chlorophyll binding" evidence=ISS;TAS

GO:0030076 "light-harvesting complex" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

TAIR|locus:2019372 CAB2 "chlorophyll A/B-binding protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 61/141 (43%), Positives = 84/141 (59%)

Query:    75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
             WYG DR  +L  G     E P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH+RWA
Sbjct:    50 WYGSDRVKYL--GPFS-GESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 106

Query:   135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-E 191
             MLGA G + PE   + G   G EAVWFK G+ +     L+Y G    ++   + A+ A +
Sbjct:   107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 165

Query:   192 IVLVGGAEYYRIT-NGFGGQA 211
             ++L+G  E YR+  NG  G+A
Sbjct:   166 VILMGAVEGYRVAGNGPLGEA 186

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009765 "photosynthesis, light harvesting" evidence=IEA

GO:0015979 "photosynthesis" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0016168 "chlorophyll binding" evidence=ISS;TAS

GO:0030076 "light-harvesting complex" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009637 "response to blue light" evidence=IEP

GO:0010114 "response to red light" evidence=IEP

GO:0010218 "response to far red light" evidence=IEP

GO:0009750 "response to fructose stimulus" evidence=IEP

GO:0005794 "Golgi apparatus" evidence=RCA

TAIR|locus:2019322 CAB1 "chlorophyll A/B binding protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 61/141 (43%), Positives = 84/141 (59%)

Query:    75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
             WYG DR  +L  G     E P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH+RWA
Sbjct:    50 WYGSDRVKYL--GPFS-GESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 106

Query:   135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-E 191
             MLGA G + PE   + G   G EAVWFK G+ +     L+Y G    ++   + A+ A +
Sbjct:   107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 165

Query:   192 IVLVGGAEYYRIT-NGFGGQA 211
             ++L+G  E YR+  NG  G+A
Sbjct:   166 VILMGAVEGYRVAGNGPLGEA 186

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009765 "photosynthesis, light harvesting" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016168 "chlorophyll binding" evidence=ISS;TAS

GO:0030076 "light-harvesting complex" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0015979 "photosynthesis" evidence=ISS

TAIR|locus:2162540 LHCB3 "light-harvesting chlorophyll B-binding protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 62/138 (44%), Positives = 81/138 (58%)

Query:    75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
             WYGPDR  +L  G     + P YLTGE PGDYG+D  GLS  P+ F+K +A E+IH RWA
Sbjct:    47 WYGPDRVKYL--GPFS-VQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 103

Query:   135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK-N-IPINLVFAVIA-E 191
             MLGA G I PE   K+      E VWFK G+ +     L+Y G  N +    + AV+  +
Sbjct:   104 MLGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 163

Query:   192 IVLVGGAEYYRITNGFGG 209
             ++L+G  E +RI NG  G
Sbjct:   164 VILMGLVEGFRI-NGLDG 180

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009765 "photosynthesis, light harvesting" evidence=IEA

GO:0015979 "photosynthesis" evidence=ISS;IMP

GO:0016020 "membrane" evidence=IEA

GO:0030076 "light-harvesting complex" evidence=ISS

GO:0005198 "structural molecule activity" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9XF89	CB5_ARATH	No assigned EC number	0.7959	0.8894	0.6892	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00031964001 SubName- Full=Putative uncharacterized protein (Chromosome chr18 scaffold_61, whole genome shotgun sequence); (290 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	217
PLN00025	262	PLN00025, PLN00025, photosystem II light harvestin	4e-34
PLN00171	324	PLN00171, PLN00171, photosystem light-harvesting c	6e-29
pfam00504	135	pfam00504, Chloroa_b-bind, Chlorophyll A-B binding	6e-18
PLN00098	267	PLN00098, PLN00098, light-harvesting complex I chl	2e-16
PLN00101	250	PLN00101, PLN00101, Photosystem I light-harvesting	2e-15
PLN00147	252	PLN00147, PLN00147, light-harvesting complex I chl	4e-14
PLN00048	262	PLN00048, PLN00048, photosystem I light harvesting	5e-14
PLN00097	244	PLN00097, PLN00097, photosystem I light harvesting	1e-13
PLN00187	286	PLN00187, PLN00187, photosystem II light-harvestin	2e-13
PLN00099	243	PLN00099, PLN00099, light-harvesting complex IChlo	6e-13
PLN00170	255	PLN00170, PLN00170, photosystem II light-harvestin	1e-11
pfam00504	135	pfam00504, Chloroa_b-bind, Chlorophyll A-B binding	7e-09
PLN00100	246	PLN00100, PLN00100, light-harvesting complex chlor	4e-08
PLN00187	286	PLN00187, PLN00187, photosystem II light-harvestin	0.003

>gnl|CDD|215033 PLN00025, PLN00025, photosystem II light harvesting chlorophyll a/b binding protein; Provisional

 Score =  122 bits (307), Expect = 4e-34
 Identities = 67/161 (41%), Positives = 88/161 (54%), Gaps = 13/161 (8%)

Query: 52  KKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPF 111
           +K      +    V+      + WYGPDR  +L  G     E P YLTGE PGDYG+D  
Sbjct: 23  RKVGNGRVTMRKTVAKAAGSGSIWYGPDRPKYL--GPFS-GETPSYLTGEFPGDYGWDTA 79

Query: 112 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN 171
           GLS  P+ F++ +  E+IHARWAMLGA G + PE   K G   G EAVWFK GA +    
Sbjct: 80  GLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFG-EAVWFKAGAQIFSEG 138

Query: 172 TLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRITNG 206
            L+Y G     +LV A  ++A    ++VL+G  E YR+  G
Sbjct: 139 GLDYLGNP---SLVHAQSILAIWACQVVLMGAVEGYRVNGG 176

Length = 262

>gnl|CDD|215088 PLN00171, PLN00171, photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional

 Score =  109 bits (275), Expect = 6e-29
 Identities = 69/163 (42%), Positives = 89/163 (54%), Gaps = 14/163 (8%)

Query: 48  LFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYG 107
           L   KKAA    S   A +      + WYG +R  +L     D    P++LTGE+PGDYG
Sbjct: 76  LEETKKAAVEESSAFKAAAQKARNESFWYGEERPRWLGPIPYD---YPDHLTGELPGDYG 132

Query: 108 YDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALL 167
           +D  GL K P  F KY  +E++HARWAML A G +IPE  + FGA    E VW++ G   
Sbjct: 133 FDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGAVHFAEPVWWRVGYAK 192

Query: 168 LDGNTLNYFGKNIPINLVFA------VIA--EIVLVGGAEYYR 202
           L G+TL+Y G  IP  L  A      VIA  + +L+ G EY R
Sbjct: 193 LQGDTLDYLG--IP-GLHIAGSQGVIVIAICQALLMVGPEYAR 232

Length = 324

>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein

 Score = 76.6 bits (189), Expect = 6e-18
 Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 13/93 (13%)

Query: 115 KKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLN 174
             P+ F +Y+  EL H RWAML   G ++PE   K G   G E  WF+ G          
Sbjct: 1   ADPETFKRYREAELKHGRWAMLAVLGALVPELLTKLGGVAG-EPAWFEAG---------G 50

Query: 175 YFGKNIPINLVFAVIAEIVLVGGAEYYRITNGF 207
                IP       +  ++L+G  E  R   G 
Sbjct: 51  PLLPAIP---TLLALQILLLMGFLELARWQGGK 80

Length = 135

>gnl|CDD|177716 PLN00098, PLN00098, light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional

 Score = 74.9 bits (184), Expect = 2e-16
 Identities = 37/87 (42%), Positives = 49/87 (56%), Gaps = 9/87 (10%)

Query: 65  VSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 124
           VS V E L     PDR ++ P      S  PE+L G +PGD+G+DP GL   P+    + 
Sbjct: 51  VSSVCEPL----PPDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFA 101

Query: 125 AYELIHARWAMLGAAGFIIPEAFNKFG 151
             EL+H+RWAML  AG +IPE   + G
Sbjct: 102 QAELMHSRWAMLAVAGILIPECLERLG 128

Length = 267

>gnl|CDD|215055 PLN00101, PLN00101, Photosystem I light-harvesting complex type 4 protein; Provisional

 Score = 72.3 bits (177), Expect = 2e-15
 Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 2/70 (2%)

Query: 95  PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
           P YL G +PGD G+DP GL++ P++   +   EL++ RWAMLG AG ++PE F K G   
Sbjct: 63  PGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 122

Query: 155 GPEAVWFKTG 164
            P+  W+  G
Sbjct: 123 APQ--WYDAG 130

Length = 250

>gnl|CDD|215076 PLN00147, PLN00147, light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional

 Score = 68.8 bits (168), Expect = 4e-14
 Identities = 41/145 (28%), Positives = 61/145 (42%), Gaps = 20/145 (13%)

Query: 26  VSSAVRTSAPGASNPS-TFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFL 84
           VS A  T+      P  +           AA      PV               +R  +L
Sbjct: 2   VSMAGGTTGGFLHQPRDSSSHCTRSISSVAASSGGINPVV------------AQERPTWL 49

Query: 85  PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 144
           P GL    + P +L G + GD+G+DP GL + P+    Y   EL+H+R+AM G AG +  
Sbjct: 50  P-GL----DPPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFT 104

Query: 145 EAFNKFGANCGPEAVWFKTGALLLD 169
           +     G    P  VW++ GA+  +
Sbjct: 105 DLLRVTGIRNLP--VWYEAGAVKFE 127

Length = 252

>gnl|CDD|177680 PLN00048, PLN00048, photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional

 Score = 68.3 bits (167), Expect = 5e-14
 Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 24/165 (14%)

Query: 47  ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
           AL S    +  AK     V       AK  G DR+++         +   YL G +PGD+
Sbjct: 10  ALSSSAARSSSAKKARFVVRAEATPPAK-QGADRQLWFAS-----KQSLSYLDGTLPGDF 63

Query: 107 GYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEA-- 158
           G+DP GLS  P+        ++ AY E+I+ R+AMLGAAG I PE   K G    P+   
Sbjct: 64  GFDPLGLSD-PEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILGKAGLI--PQETA 120

Query: 159 -VWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 202
             WF++G +   G T +Y+     + ++     E+ L+G AE+ R
Sbjct: 121 LPWFQSGVIPPAG-TYDYWADPYTLFVL-----EMALMGFAEHRR 159

Length = 262

>gnl|CDD|165670 PLN00097, PLN00097, photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional

 Score = 67.0 bits (163), Expect = 1e-13
 Identities = 40/128 (31%), Positives = 57/128 (44%), Gaps = 18/128 (14%)

Query: 24  LNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIF 83
           +    A++ +A       T +P  + SK +A+      P AV+            DR  +
Sbjct: 1   MASIMAIQLAAGLKQKSRTVRPRGVASKARAS----RGPGAVAA---------AADRPTW 47

Query: 84  LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFII 143
           LP           +L G +P DYG+DP  L   P+    +   EL+HARWAMLG AG + 
Sbjct: 48  LPG-----KAAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVA 102

Query: 144 PEAFNKFG 151
           PE   K G
Sbjct: 103 PELLTKIG 110

Length = 244

>gnl|CDD|177781 PLN00187, PLN00187, photosystem II light-harvesting complex II protein Lhcb4; Provisional

 Score = 67.5 bits (165), Expect = 2e-13
 Identities = 59/221 (26%), Positives = 84/221 (38%), Gaps = 70/221 (31%)

Query: 27  SSAVRTSAP-GASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLP 85
           SS + T  P  ASN         F KKK A     K  +            G DR ++ P
Sbjct: 8   SSFMGTRVPDVASNSGRIVARFGFGKKKKAAKKAKKKSSKV----------GADRPLWFP 57

Query: 86  EGLLDRSEIPEYLTGEVPGDYGYDPFGLSK------------------------------ 115
                 ++ PE+L G + GDYG+DPFGL K                              
Sbjct: 58  G-----AKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTE 112

Query: 116 ----KPDDFSKY------QAY---ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK 162
               K   F  Y      Q +   ELIH RWAML   G +  EA             W  
Sbjct: 113 ASEIKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEALTG--------VTWQD 164

Query: 163 TGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 202
            G + L+DG++  Y G+ +P ++   +  E++++G  E+ R
Sbjct: 165 AGKVELVDGSS--YLGQPLPFSITTLIWIEVLVIGYIEFQR 203

Length = 286

>gnl|CDD|177717 PLN00099, PLN00099, light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional

 Score = 65.4 bits (159), Expect = 6e-13
 Identities = 26/53 (49%), Positives = 35/53 (66%)

Query: 95  PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 147
           P YL G  PGD+G+DP  L + P++  +Y+  ELIH RWAML   G ++PEA 
Sbjct: 54  PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 106

Length = 243

>gnl|CDD|215087 PLN00170, PLN00170, photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional

 Score = 61.9 bits (150), Expect = 1e-11
 Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 4/77 (5%)

Query: 95  PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
           PE+L G +PGDYG+DP GL K P     Y+  ELIH RWAM    G  + +A++    F 
Sbjct: 67  PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 126

Query: 152 ANCGPEAVW-FKTGALL 167
           A   P A+  F  G+LL
Sbjct: 127 AGADPGAIAPFSFGSLL 143

Length = 255

>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein

 Score = 52.3 bits (126), Expect = 7e-09
 Identities = 17/48 (35%), Positives = 28/48 (58%)

Query: 96  EYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFII 143
           E      PG +G+DP GL+K P+ F++ +  E+ + R AM+   GF +
Sbjct: 85  EGGDPGYPGGFGFDPLGLAKDPETFAELKLKEIKNGRLAMIAFLGFFV 132

Length = 135

>gnl|CDD|215054 PLN00100, PLN00100, light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional

 Score = 51.8 bits (124), Expect = 4e-08
 Identities = 22/55 (40%), Positives = 31/55 (56%)

Query: 92  SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 146
           +  P+YL G + GDYG+DP  L   P+     Q  EL++ RWAM   AG +  +A
Sbjct: 42  ATAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDA 96

Length = 246

>gnl|CDD|177781 PLN00187, PLN00187, photosystem II light-harvesting complex II protein Lhcb4; Provisional

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 17/45 (37%), Positives = 23/45 (51%)

Query: 103 PGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 147
           PG   +DP GL+  P+     Q  E+ HAR AM+   GF +  A 
Sbjct: 215 PGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAA 259

Length = 286

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	217
PLN00187	286	photosystem II light-harvesting complex II protein	100.0
PLN00025	262	photosystem II light harvesting chlorophyll a/b bi	100.0
PLN00171	324	photosystem light-harvesting complex -chlorophyll	100.0
PLN00098	267	light-harvesting complex I chlorophyll a/b-binding	100.0
PLN00101	250	Photosystem I light-harvesting complex type 4 prot	99.98
PLN00048	262	photosystem I light harvesting chlorophyll a/b bin	99.97
PLN00097	244	photosystem I light harvesting complex Lhca2/4, ch	99.97
PLN00170	255	photosystem II light-harvesting-Chl-binding protei	99.97
PLN00147	252	light-harvesting complex I chlorophyll-a/b binding	99.96
PLN00099	243	light-harvesting complex IChlorophyll A-B binding	99.95
PLN00100	246	light-harvesting complex chlorophyll-a/b protein o	99.95
PF00504	156	Chloroa_b-bind: Chlorophyll A-B binding protein; I	99.83
PLN00089	209	fucoxanthin-chlorophyll a/c binding protein; Provi	99.7
PLN00147	252	light-harvesting complex I chlorophyll-a/b binding	99.62
PLN00089	209	fucoxanthin-chlorophyll a/c binding protein; Provi	99.6
PLN00048	262	photosystem I light harvesting chlorophyll a/b bin	99.57
PLN00025	262	photosystem II light harvesting chlorophyll a/b bi	99.53
PLN00187	286	photosystem II light-harvesting complex II protein	99.5
PLN00099	243	light-harvesting complex IChlorophyll A-B binding	99.49
PLN00098	267	light-harvesting complex I chlorophyll a/b-binding	99.49
PF00504	156	Chloroa_b-bind: Chlorophyll A-B binding protein; I	99.44
PLN00171	324	photosystem light-harvesting complex -chlorophyll	99.43
PLN00097	244	photosystem I light harvesting complex Lhca2/4, ch	99.41
PLN00100	246	light-harvesting complex chlorophyll-a/b protein o	99.34
PLN00120	202	fucoxanthin-chlorophyll a-c binding protein; Provi	99.31
PLN00120	202	fucoxanthin-chlorophyll a-c binding protein; Provi	99.31
PLN00101	250	Photosystem I light-harvesting complex type 4 prot	99.29
PLN00170	255	photosystem II light-harvesting-Chl-binding protei	99.28
PHA02337	35	putative high light inducible protein	98.0
PLN00014	250	light-harvesting-like protein 3; Provisional	97.4
PLN00084	214	photosystem II subunit S (PsbS); Provisional	96.33

>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional

Probab=100.00  E-value=1.4e-38  Score=286.00  Aligned_cols=158  Identities=30%  Similarity=0.595  Sum_probs=126.3

Q ss_pred             chhhhcCCccccccccccCCCCCCCCCCCcceEeeccCCCCCCCCCCCCcCCCchhhhhhhhCCCCccccCcCccCCCCC
Q 027863           15 GAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEI   94 (217)
Q Consensus        15 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~f~~~~~~~~~~~k~~a~~~~~~~~~~w~g~~R~~~lp~g~~~~~~~   94 (217)
                      ..|.|+|.++..           +.++..+++++|+.++...++ ++++       +...+|+++|++|||+     .++
T Consensus         6 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~r~~w~p~-----~~~   61 (286)
T PLN00187          6 AASSFMGTRVPD-----------VASNSGRIVARFGFGKKKKAA-KKAK-------KKSSKVGADRPLWFPG-----AKA   61 (286)
T ss_pred             cchhhhhhhhcc-----------cccCccchhhhhccCcccccC-Cccc-------cCccCCCCCccccCCC-----CCC
Confidence            347789988752           344677888888743221111 1111       1235789999999996     899


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCchh-------------------------------------------HHHHHHHHHhhc
Q 027863           95 PEYLTGEVPGDYGYDPFGLSKKPDD-------------------------------------------FSKYQAYELIHA  131 (217)
Q Consensus        95 P~yL~G~~PGD~GfDPlGL~~dpe~-------------------------------------------~~~~r~~EL~hG  131 (217)
                      |+||||++||||||||+||+++||.                                           ++|||++||+||
T Consensus        62 P~~LdGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~l~r~REaELiHG  141 (286)
T PLN00187         62 PEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGLQRFRECELIHG  141 (286)
T ss_pred             cccccCCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccccccCcchhhhHHHHHHHHHhhhh
Confidence            9999999999999999999999986                                           599999999999


Q ss_pred             hhhHhhhhhhhhhhhhccCCCCCCCCcccccccccccCCCccCCCCCCchhhHHHHHHHHHHHHhhhhheeccC
Q 027863          132 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN  205 (217)
Q Consensus       132 RlAMLa~~G~l~~e~l~~~G~~~~p~~~Wf~AG~~~~~~~~l~Ylg~~~p~~~~~li~~evlLmG~~E~~R~~g  205 (217)
                      ||||||++||+++|+++        +..||++|.+.+.++ .+|++++.++.+..++++|+++||++|.+|+.+
T Consensus       142 RwAMLAvaG~lvpEll~--------G~~W~~aG~~~~~~g-~~y~g~~~p~~~~~l~~iqvllmG~~E~~R~~~  206 (286)
T PLN00187        142 RWAMLATLGALSVEALT--------GVTWQDAGKVELVDG-SSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAE  206 (286)
T ss_pred             HHHHHHhhchhhHHhcc--------CCccccccccccccc-ccccccccchhHHHHHHHHHHHHHHHHhhhccC
Confidence            99999999999999985        236999998766444 469999888877788899999999999999764

>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional

Probab=100.00  E-value=1.6e-36  Score=270.15  Aligned_cols=130  Identities=45%  Similarity=0.889  Sum_probs=115.0

Q ss_pred             hhhhhCCCCccccCcCccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCC
Q 027863           72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG  151 (217)
Q Consensus        72 ~~~w~g~~R~~~lp~g~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G  151 (217)
                      .+.|||+||++|||  ++. .++|+||||++||||||||+||++|++++++||++||+||||||||++||+++|++++.|
T Consensus        43 ~~~~~g~~R~~~l~--p~~-~~~P~~Ldg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g  119 (262)
T PLN00025         43 GSIWYGPDRPKYLG--PFS-GETPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNG  119 (262)
T ss_pred             cccccCCCCccccC--Ccc-cCCcccccCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCC
Confidence            46799999999993  444 589999999999999999999999999999999999999999999999999999999887


Q ss_pred             CCCCCCcccccccccccCCCccCCCCCCchh---hHHHHHHHHHHHHhhhhheeccC
Q 027863          152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITN  205 (217)
Q Consensus       152 ~~~~p~~~Wf~AG~~~~~~~~l~Ylg~~~p~---~~~~li~~evlLmG~~E~~R~~g  205 (217)
                      +... +.+||++|++++.+++++|++++..+   .+..++++|+++||++|.+|+++
T Consensus       120 ~~~~-~~~W~~ag~~~~~~gg~~y~~~p~~~~~~~~~a~~~~qv~lmg~~E~~r~~~  175 (262)
T PLN00025        120 VKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVNG  175 (262)
T ss_pred             cCcC-cccccccccccccccccccccCcccchhhhHHHHHHHHHHHHHHHHHhcccC
Confidence            7543 56899999988888889999988654   34556788999999999999876

>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional

Probab=100.00  E-value=8.3e-35  Score=265.00  Aligned_cols=134  Identities=41%  Similarity=0.782  Sum_probs=115.9

Q ss_pred             hhhhhhhhCCCCccccCcCccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhc
Q 027863           69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN  148 (217)
Q Consensus        69 ~~~~~~w~g~~R~~~lp~g~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~  148 (217)
                      +++.+.|||++|++|||+  ++ .++|+||||++||||||||+||++|++++++||++||+||||||||++|+++||+++
T Consensus        97 ~~~~~~~~g~~R~~wl~~--~~-~~~P~yLdG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~  173 (324)
T PLN00171         97 ARNESFWYGEERPRWLGP--IP-YDYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLD  173 (324)
T ss_pred             hcccCcccCCCCccccCC--CC-CCCCcccCCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhc
Confidence            566789999999999964  22 379999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCcccccccccccCCCccCCCCCCch-----hhHHHHHHHHHHHHhhhhheeccC
Q 027863          149 KFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-----INLVFAVIAEIVLVGGAEYYRITN  205 (217)
Q Consensus       149 ~~G~~~~p~~~Wf~AG~~~~~~~~l~Ylg~~~p-----~~~~~li~~evlLmG~~E~~R~~g  205 (217)
                      +.|....++++||++|...+++..++|++.+..     ..+..+.++|+++|+++|++|+.+
T Consensus       174 ~~g~~~~~~p~W~~aG~~~~~g~~~~y~~~p~~~~~~~q~l~~i~~iEillm~g~E~~R~~~  235 (324)
T PLN00171        174 LFGAVHFAEPVWWRVGYAKLQGDTLDYLGIPGLHIAGSQGVIVIAICQALLMVGPEYARYCG  235 (324)
T ss_pred             cCCccccCccchhhcccccccccchhhccCCccccchhHHHHHHHHHHHHHhhhhhheeecc
Confidence            888765456789999988787777889887642     134456678999999999999875

>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional

Probab=100.00  E-value=1.5e-33  Score=251.59  Aligned_cols=115  Identities=37%  Similarity=0.780  Sum_probs=102.6

Q ss_pred             hhhhhCCCCccccCcCccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCC
Q 027863           72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG  151 (217)
Q Consensus        72 ~~~w~g~~R~~~lp~g~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G  151 (217)
                      ++.+|+++|++|+|+     .++|+||||++||||||||+||++|++++++||++||+||||||||++|+++||++++.|
T Consensus        54 ~~~~~~~~r~~w~Pg-----~~~P~~LdG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g  128 (267)
T PLN00098         54 VCEPLPPDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLG  128 (267)
T ss_pred             ccccCCCCccccCCC-----CCCCccCCCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence            566799999999996     789999999999999999999999999999999999999999999999999999999888


Q ss_pred             CCCCCCcccccccccccCCCccCCCCCCchhhHHHHHHHHHHHHhhhhheeccC
Q 027863          152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN  205 (217)
Q Consensus       152 ~~~~p~~~Wf~AG~~~~~~~~l~Ylg~~~p~~~~~li~~evlLmG~~E~~R~~g  205 (217)
                      ++.  +..||++|+.       +|++++     ..++++|+++||++|++||++
T Consensus       129 ~~~--~~~w~~Ag~~-------~~~~~~-----~~l~~~q~~lmG~~E~~R~~~  168 (267)
T PLN00098        129 FIE--NFSWYDAGAR-------EYFADP-----TTLFVVQMVLMGWAEGRRWAD  168 (267)
T ss_pred             ccc--ccccccccch-------hhccCc-----hHHHHHHHHHHHHHHHHHhhc
Confidence            764  4579999875       477765     235678999999999999876

>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional

Probab=99.98  E-value=9e-33  Score=244.72  Aligned_cols=114  Identities=33%  Similarity=0.706  Sum_probs=101.4

Q ss_pred             hhhhCCCCccccCcCccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCC
Q 027863           73 AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA  152 (217)
Q Consensus        73 ~~w~g~~R~~~lp~g~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~  152 (217)
                      +.+++.+|++|+|+     .++|+||||++||||||||+||++|+++++++|++||+||||||||++|+++||++++.|+
T Consensus        46 ~~~~~~~r~~W~P~-----~~~P~~LdG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~  120 (250)
T PLN00101         46 SFKVEAKKGEWLPG-----LASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI  120 (250)
T ss_pred             cccccccccccCCC-----CCCCcccCCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCC
Confidence            34556799999996     7899999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCcccccccccccCCCccCCCCCCchhhHHHHHHHHHHHHhhhhheeccC
Q 027863          153 NCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN  205 (217)
Q Consensus       153 ~~~p~~~Wf~AG~~~~~~~~l~Ylg~~~p~~~~~li~~evlLmG~~E~~R~~g  205 (217)
                      ++.  +.||++|+.       +|++.+     .+++++|+++||++|++|+++
T Consensus       121 ~~~--p~w~~ag~~-------~~~~~~-----~~l~~ie~~~mg~~E~~R~~~  159 (250)
T PLN00101        121 INA--PQWYDAGKA-------EYFASS-----STLFVIEFILFHYVEIRRWQD  159 (250)
T ss_pred             cCC--Cccccccch-------hhcccc-----hHHHHHHHHHHHHHHHHHhhc
Confidence            764  579999875       477654     356778999999999999876

>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional

Probab=99.97  E-value=5.1e-32  Score=241.35  Aligned_cols=119  Identities=35%  Similarity=0.629  Sum_probs=100.6

Q ss_pred             hCCCCccccCcCccCCCCCCCCCCCCCCCCCCCCCCCCCCCch------hHHHHHHHHHhhchhhHhhhhhhhhhhhhcc
Q 027863           76 YGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD------DFSKYQAYELIHARWAMLGAAGFIIPEAFNK  149 (217)
Q Consensus        76 ~g~~R~~~lp~g~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe------~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~  149 (217)
                      |+++|++|+|+     .++|+||||++||||||||+||+ +++      +.+++|++||+||||||||++||++||++++
T Consensus        38 ~~~~r~~w~p~-----~~~P~yLdG~lPGD~GFDPlGL~-~p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~~  111 (262)
T PLN00048         38 QGADRQLWFAS-----KQSLSYLDGTLPGDFGFDPLGLS-DPEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILGK  111 (262)
T ss_pred             CCCCCceecCC-----CCCccccCCCCCCccCCCccccC-CccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhcc
Confidence            46799999996     89999999999999999999997 443      5688999999999999999999999999999


Q ss_pred             CCCCCCC-CcccccccccccCCCccCCCCCCchhhHHHHHHHHHHHHhhhhheeccCC
Q 027863          150 FGANCGP-EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG  206 (217)
Q Consensus       150 ~G~~~~p-~~~Wf~AG~~~~~~~~l~Ylg~~~p~~~~~li~~evlLmG~~E~~R~~gG  206 (217)
                      .|++... ...||++|+... .+..+|++++     .+++++|+++||++|.+|+++-
T Consensus       112 ~g~~~~~~~~~w~~ag~~~~-~~~~~y~~~p-----~~l~~~~~~lmg~~E~~R~~~~  163 (262)
T PLN00048        112 AGLIPQETALPWFQSGVIPP-AGTYDYWADP-----YTLFVLEMALMGFAEHRRAQDY  163 (262)
T ss_pred             CCcccccccccccccccccc-ccccccccch-----hHHHHHHHHHhhheeeeccccc
Confidence            8886432 346999998533 4456799885     3567889999999999999873

>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional

Probab=99.97  E-value=2.9e-32  Score=240.74  Aligned_cols=113  Identities=31%  Similarity=0.554  Sum_probs=98.6

Q ss_pred             CCCCccccCcCccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCCCCC
Q 027863           77 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGP  156 (217)
Q Consensus        77 g~~R~~~lp~g~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~~~p  156 (217)
                      +++|++|||+     .++|+||||++||||||||+||++|++++++||++||+||||||||++||++||++++.|+..  
T Consensus        41 ~~~R~~w~Pg-----~~~P~~LdG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~~--  113 (244)
T PLN00097         41 AADRPTWLPG-----KAAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMAD--  113 (244)
T ss_pred             CCCCcccCCC-----CCCccccCCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCccc--
Confidence            4699999996     789999999999999999999999999999999999999999999999999999999988754  


Q ss_pred             CcccccccccccCCCccCCCCCCchhhHHHHHHHHHHHHhhhhheeccCCC
Q 027863          157 EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGF  207 (217)
Q Consensus       157 ~~~Wf~AG~~~~~~~~l~Ylg~~~p~~~~~li~~evlLmG~~E~~R~~gG~  207 (217)
                      .++||++|+..      .|+...     ..++.+|+++||++|.+|+++-.
T Consensus       114 ~p~W~~Ag~~~------~~~~~~-----~~l~~i~~~lmg~~E~~r~~~~~  153 (244)
T PLN00097        114 LPNWIDAAKWD------GYWAGA-----GPLFFIQMAMFNWAEIRRWQDMK  153 (244)
T ss_pred             CCccccCCcch------hccccc-----hhHHHHHHHHHHHHHHHHhhccc
Confidence            35799999752      255432     34677899999999999998643

>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional

Probab=99.97  E-value=1.4e-30  Score=231.35  Aligned_cols=116  Identities=32%  Similarity=0.593  Sum_probs=95.2

Q ss_pred             CCCccccCcC-ccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCCCCC
Q 027863           78 PDRRIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGP  156 (217)
Q Consensus        78 ~~R~~~lp~g-~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~~~p  156 (217)
                      ++|+.|+|+- .-+...+|+||||++||||||||+||++|+|++++||++||+||||||||++||++||++++       
T Consensus        49 ~~~k~w~p~~~~~~~~~~P~~l~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g-------  121 (255)
T PLN00170         49 QPKKSWIPAVKGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG-------  121 (255)
T ss_pred             CCCccccCCCCCCcccCCcccccccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccC-------
Confidence            4788899841 00123579999999999999999999999999999999999999999999999999999863       


Q ss_pred             CcccccccccccCCCccCCCCCCchhhHHHHHHHHHHHHhhhhheeccCCCCCC
Q 027863          157 EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGFGGQ  210 (217)
Q Consensus       157 ~~~Wf~AG~~~~~~~~l~Ylg~~~p~~~~~li~~evlLmG~~E~~R~~gG~~~~  210 (217)
                       ..||++|+..      .++   .|+++.+++++|+++||++|++||+|.++|.
T Consensus       122 -~~w~~aG~~~------~~~---~p~~~~~l~~~q~~lmg~~E~~R~~~~~~P~  165 (255)
T PLN00170        122 -IPWFEAGADP------GAI---APFSFGSLLGTQLLLMGWVESKRWVDFFNPD  165 (255)
T ss_pred             -CChhhCCccc------ccc---CccchHHHHHHHHHHhhhhhheeeccccCCc
Confidence             3599999852      122   1344567788999999999999998866553

>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional

Probab=99.96  E-value=3.5e-29  Score=222.10  Aligned_cols=113  Identities=31%  Similarity=0.632  Sum_probs=95.9

Q ss_pred             hhCCCCccccCcCccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCCC
Q 027863           75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC  154 (217)
Q Consensus        75 w~g~~R~~~lp~g~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~~  154 (217)
                      .++++|++|+|+     .++|+||||++||||||||+||++|++++++||++||+||||||||++|+++||+++..|...
T Consensus        40 ~~~~~R~~wlP~-----~~~P~~Ldg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~~~  114 (252)
T PLN00147         40 VVAQERPTWLPG-----LDPPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIRN  114 (252)
T ss_pred             cCCCCccccCCC-----CCCCCcCCCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCCCcC
Confidence            446799999995     789999999999999999999999999999999999999999999999999999999888764


Q ss_pred             CCCcccccccccccCCCccCCCCCCchhhHHHHHHHHHHHHhhhhheeccC
Q 027863          155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN  205 (217)
Q Consensus       155 ~p~~~Wf~AG~~~~~~~~l~Ylg~~~p~~~~~li~~evlLmG~~E~~R~~g  205 (217)
                        .+.||++|...+      .+..+     .+++++|+++||++|.+|+.+
T Consensus       115 --~p~w~~ag~~~~------~~~~~-----~~~~~~q~~~mG~~E~~R~~~  152 (252)
T PLN00147        115 --LPVWYEAGAVKF------EFAST-----RTLFVVQLLLMGFAETKRYMD  152 (252)
T ss_pred             --Ccchhhcccchh------ccccc-----hHHHHHHHHHHHHHHHHhhcc
Confidence              357999986533      12222     345677999999999999754

>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional

Probab=99.95  E-value=7.3e-29  Score=219.12  Aligned_cols=114  Identities=32%  Similarity=0.688  Sum_probs=98.2

Q ss_pred             CCCccccCcCccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCCCCCC
Q 027863           78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE  157 (217)
Q Consensus        78 ~~R~~~lp~g~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~~~p~  157 (217)
                      .+|..|+|+     ..+|+||||++||||||||+||++++++++++|++||+||||||||++|+++||+++.        
T Consensus        42 ~~~~~w~P~-----~~~P~~Ldg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~--------  108 (243)
T PLN00099         42 TMSADWMPG-----QPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--------  108 (243)
T ss_pred             cccccccCC-----CCCCccCCCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc--------
Confidence            478899996     7899999999999999999999999999999999999999999999999999999762        


Q ss_pred             ccccccccc-ccCCCccCCCCCCchh-hHHHHHHHHHHHHhhhhheecc
Q 027863          158 AVWFKTGAL-LLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRIT  204 (217)
Q Consensus       158 ~~Wf~AG~~-~~~~~~l~Ylg~~~p~-~~~~li~~evlLmG~~E~~R~~  204 (217)
                      ..|+++++. .+.++..+|++++.++ .+..++++|+++||++|.+|+.
T Consensus       109 ~~w~~a~~~~~~~~g~~~~~g~~~~~~~l~~~~~iqvl~ig~~E~~r~~  157 (243)
T PLN00099        109 GNWVKAQEWAAIPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSM  157 (243)
T ss_pred             CCcccccchhccCcchhhhccCccchhhHHHHHHHHHHHHHHHHHHhhc
Confidence            259988863 3455667899988776 3455668899999999998854

>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional

Probab=99.95  E-value=1.1e-28  Score=218.13  Aligned_cols=103  Identities=31%  Similarity=0.598  Sum_probs=89.1

Q ss_pred             CCCccccCcCccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCCCCCC
Q 027863           78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE  157 (217)
Q Consensus        78 ~~R~~~lp~g~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~~~p~  157 (217)
                      .+|++|+|+     .++|+||||++||||||||+||++++++++++|++||+||||||||++|++++|+++        .
T Consensus        33 ~~r~~W~P~-----~~~P~~Ldg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~--------~   99 (246)
T PLN00100         33 RARPMWYPG-----ATAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVG--------L   99 (246)
T ss_pred             CCCcccCCC-----CCCCCCCCCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhc--------c
Confidence            489999996     789999999999999999999999999999999999999999999999999999975        2


Q ss_pred             cccccccccccCCCccCCCCCCchhhHHHHHHHHHHHHhhhhheeccC
Q 027863          158 AVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN  205 (217)
Q Consensus       158 ~~Wf~AG~~~~~~~~l~Ylg~~~p~~~~~li~~evlLmG~~E~~R~~g  205 (217)
                      +.||++|...       |..+     ...++++|+++||++|.+|+++
T Consensus       100 P~w~~ag~~~-------~~~~-----~~~l~~iqill~g~~E~~r~~~  135 (246)
T PLN00100        100 PKFWEAGAEK-------YGLD-----LQTLVLIQVVVMAVLEAARYRG  135 (246)
T ss_pred             cchhhcchhh-------hccc-----hhHHHHHHHHHHHHHhhhcccc
Confidence            3599988752       3222     2345678999999999999875

>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein

Probab=99.83  E-value=7.1e-21  Score=155.46  Aligned_cols=97  Identities=37%  Similarity=0.660  Sum_probs=72.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCCC--CCCcccccccccccCCC
Q 027863           94 IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC--GPEAVWFKTGALLLDGN  171 (217)
Q Consensus        94 ~P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~~--~p~~~Wf~AG~~~~~~~  171 (217)
                      +|+||||+++||+||||+||++++ ++.++|+.||+|||+||||++|++++|++++.+...  .....|++++.      
T Consensus         1 ~p~~l~G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~~------   73 (156)
T PF00504_consen    1 PPPYLDGSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAGG------   73 (156)
T ss_dssp             --TTTTSTSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTTS------
T ss_pred             CcccccCCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhhh------
Confidence            599999999999999999999877 999999999999999999999999999998754321  11234776541      


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHhhhhheeccCC
Q 027863          172 TLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG  206 (217)
Q Consensus       172 ~l~Ylg~~~p~~~~~li~~evlLmG~~E~~R~~gG  206 (217)
                       ++     .+   ...++..++++|.+|.+|..+.
T Consensus        74 -~~-----~~---~~~~~~~l~~ig~~e~~~~~~~   99 (156)
T PF00504_consen   74 -IP-----VP---AAGWAQILLFIGALEPWRQQGV   99 (156)
T ss_dssp             -SS-----SH---SHHHHHHHHHHHHHHHHHHHHT
T ss_pred             -hh-----hh---hHHHHHHHHHHhHhhhhhcccc
Confidence             11     11   1123456777888888876653

LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.

>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional

Probab=99.70  E-value=1.9e-17  Score=143.76  Aligned_cols=57  Identities=33%  Similarity=0.546  Sum_probs=51.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCC-CchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCC
Q 027863           95 PEYLTGEVPGDYGYDPFGLSK-KPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA  152 (217)
Q Consensus        95 P~yL~G~~PGD~GfDPlGL~~-dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~  152 (217)
                      |.-|+|. .||++|||+||++ ++|+++++|++||||||+||||++|+++||.++..|.
T Consensus        47 ~p~l~g~-~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~  104 (209)
T PLN00089         47 EFMFIGK-TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPGE  104 (209)
T ss_pred             CccccCC-CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCc
Confidence            4468898 9999999999985 5778999999999999999999999999999887664

>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional

Probab=99.62  E-value=2.9e-16  Score=139.82  Aligned_cols=60  Identities=25%  Similarity=0.418  Sum_probs=55.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCCC
Q 027863           95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC  154 (217)
Q Consensus        95 P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~~  154 (217)
                      +..+++.+|||++|||+||.+|+++++++|++|||||||||+|++|+++|+++++.|++.
T Consensus       172 ~~~~~~~yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~  231 (252)
T PLN00147        172 LEGLEPGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPID  231 (252)
T ss_pred             ccccCCCCcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHH
Confidence            345667799999999999999999999999999999999999999999999999988753

>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional

Probab=99.60  E-value=7.3e-16  Score=133.92  Aligned_cols=54  Identities=30%  Similarity=0.496  Sum_probs=50.3

Q ss_pred             CCCCCCCCCCCCCCC-CCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCC
Q 027863          100 GEVPGDYGYDPFGLS-KKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN  153 (217)
Q Consensus       100 G~~PGD~GfDPlGL~-~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~  153 (217)
                      +++||||||||+||. +|+++++++|++||+||||||+|++|+++|+++++.|+.
T Consensus       153 ~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~tg~g~~  207 (209)
T PLN00089        153 DRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHGFP  207 (209)
T ss_pred             CCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCC
Confidence            578999999999994 689999999999999999999999999999999988764

>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional

Probab=99.57  E-value=1.3e-15  Score=136.39  Aligned_cols=55  Identities=24%  Similarity=0.419  Sum_probs=51.9

Q ss_pred             CCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCCC
Q 027863          100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC  154 (217)
Q Consensus       100 G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~~  154 (217)
                      ..+|||++|||+||++|+|+++++|++||+||||||+|++||++|+++++.|++.
T Consensus       187 ~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~  241 (262)
T PLN00048        187 PAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQ  241 (262)
T ss_pred             cccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHHH
Confidence            3699999999999999999999999999999999999999999999999988753

>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional

Probab=99.53  E-value=5.3e-15  Score=132.45  Aligned_cols=55  Identities=29%  Similarity=0.546  Sum_probs=51.8

Q ss_pred             CCCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCCC
Q 027863           99 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC  154 (217)
Q Consensus        99 ~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~~  154 (217)
                      |..+|||+ |||+||.+|+++++++|.+||+||||||++++||++|+++|+.|++.
T Consensus       183 d~~yPG~~-FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPle  237 (262)
T PLN00025        183 DPLYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE  237 (262)
T ss_pred             cCcCCccc-CCccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHH
Confidence            45799999 99999999999999999999999999999999999999999998763

>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional

Probab=99.50  E-value=1.4e-14  Score=131.17  Aligned_cols=56  Identities=32%  Similarity=0.458  Sum_probs=52.0

Q ss_pred             CCCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCCC
Q 027863           99 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC  154 (217)
Q Consensus        99 ~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~~  154 (217)
                      +..+|||++|||+||.+|+++++++|++||+||||||+|++||++|+++++.|++.
T Consensus       211 ~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~  266 (286)
T PLN00187        211 KRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLN  266 (286)
T ss_pred             CCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChHH
Confidence            34589999999999999999999999999999999999999999999999988753

>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional

Probab=99.49  E-value=1.7e-14  Score=128.02  Aligned_cols=53  Identities=34%  Similarity=0.703  Sum_probs=48.8

Q ss_pred             CCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhh-hhccCCCC
Q 027863          100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE-AFNKFGAN  153 (217)
Q Consensus       100 G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e-~l~~~G~~  153 (217)
                      +.+||| +|||+|+.+|+++++++|++|||||||||+|++|+++|+ .+++.|++
T Consensus       164 ~~yPGd-~FDPlGl~kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl  217 (243)
T PLN00099        164 KKYPGG-AFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL  217 (243)
T ss_pred             CcCCCC-cCCcccccCCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChH
Confidence            468999 899999999999999999999999999999999999999 46777775

>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional

Probab=99.49  E-value=1.9e-14  Score=129.13  Aligned_cols=55  Identities=24%  Similarity=0.388  Sum_probs=50.9

Q ss_pred             CCCCCCCCCCCCCCCC-CchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCCC
Q 027863          100 GEVPGDYGYDPFGLSK-KPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC  154 (217)
Q Consensus       100 G~~PGD~GfDPlGL~~-dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~~  154 (217)
                      ..+|||++|||+||.+ |+++++++|.+|||||||||+|++|+++|+++|+.|++.
T Consensus       191 ~~yPGg~~FDPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~  246 (267)
T PLN00098        191 VGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIE  246 (267)
T ss_pred             CCCCCCccCCcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCChHH
Confidence            3689999999999974 899999999999999999999999999999999988763

>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein

Probab=99.44  E-value=7.2e-14  Score=114.20  Aligned_cols=50  Identities=46%  Similarity=0.733  Sum_probs=46.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhh
Q 027863           97 YLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA  146 (217)
Q Consensus        97 yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~  146 (217)
                      +.++.+|||++|||+|+.+|+++..++|.+||+|||+||+|++|+++||.
T Consensus       107 ~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NGRlAMla~~g~~~~e~  156 (156)
T PF00504_consen  107 GKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNGRLAMLAFAGFVAQEA  156 (156)
T ss_dssp             SSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             cccccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            56788999999999999999999999999999999999999999999973

LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.

>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional

Probab=99.43  E-value=8.4e-14  Score=127.75  Aligned_cols=53  Identities=36%  Similarity=0.541  Sum_probs=48.5

Q ss_pred             CCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCCC
Q 027863          102 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC  154 (217)
Q Consensus       102 ~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~~  154 (217)
                      +||+++|||+||.+|+++++++|++||+||||||+|++|+++|+++|+.|++.
T Consensus       252 YPGG~~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPle  304 (324)
T PLN00171        252 YPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQ  304 (324)
T ss_pred             CCcccCCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChHH
Confidence            45555699999999999999999999999999999999999999999988753

>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional

Probab=99.41  E-value=1.3e-13  Score=122.55  Aligned_cols=47  Identities=23%  Similarity=0.311  Sum_probs=45.3

Q ss_pred             CCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCCC
Q 027863          108 YDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC  154 (217)
Q Consensus       108 fDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~~  154 (217)
                      |||+||.+|+++++++|.+|||||||||+|++|+++|+++|++|++.
T Consensus       182 FDPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl~  228 (244)
T PLN00097        182 FDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVD  228 (244)
T ss_pred             CCccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHHH
Confidence            99999999999999999999999999999999999999999999863

>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional

Probab=99.34  E-value=5.1e-13  Score=118.82  Aligned_cols=49  Identities=22%  Similarity=0.290  Sum_probs=44.3

Q ss_pred             CCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCCC
Q 027863          101 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC  154 (217)
Q Consensus       101 ~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~~  154 (217)
                      ..||||+|||+||.+     +++|++|||||||||+|++|+++|+++|+.|++.
T Consensus       143 ~~pg~~~FDPLGl~~-----~~~K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPle  191 (246)
T PLN00100        143 GVLSFFPFDPTGMDS-----PEMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLE  191 (246)
T ss_pred             CCCCCCCCCcccccH-----HHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHH
Confidence            468999999999963     5789999999999999999999999999999763

>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional

Probab=99.31  E-value=1.6e-12  Score=112.66  Aligned_cols=51  Identities=27%  Similarity=0.397  Sum_probs=40.8

Q ss_pred             CCCCCCCCCC--CCCCCC-CchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccC
Q 027863          100 GEVPGDYGYD--PFGLSK-KPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF  150 (217)
Q Consensus       100 G~~PGD~GfD--PlGL~~-dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~  150 (217)
                      +++||||+++  ++|+.. |+|+.+++|++|||||||||+|++|+++||.+++.
T Consensus       142 ~~~pGd~~~g~~d~gfdp~~~~~~~~~~~~EL~NGRLAMiai~G~~~qe~l~g~  195 (202)
T PLN00120        142 GEFVGDFRNGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGILALMVHEQLGVE  195 (202)
T ss_pred             CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            5778855333  333332 78999999999999999999999999999999764

>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional

Probab=99.31  E-value=2.4e-12  Score=111.47  Aligned_cols=44  Identities=32%  Similarity=0.677  Sum_probs=39.2

Q ss_pred             CCCCCCC--CCchhHHHHHHHHHhhchhhHhhhhhhhhhhh-hccCC
Q 027863          108 YDPFGLS--KKPDDFSKYQAYELIHARWAMLGAAGFIIPEA-FNKFG  151 (217)
Q Consensus       108 fDPlGL~--~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~-l~~~G  151 (217)
                      |||+||.  +|+++++++|++||+||||||||++|+++||. ++..|
T Consensus        47 fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~g~~~Pg   93 (202)
T PLN00120         47 FDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEAGIRLPG   93 (202)
T ss_pred             CCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecccccCCC
Confidence            9999997  47899999999999999999999999999997 44334

>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional

Probab=99.29  E-value=1.5e-12  Score=116.07  Aligned_cols=48  Identities=25%  Similarity=0.472  Sum_probs=42.3

Q ss_pred             CCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCCC
Q 027863          102 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC  154 (217)
Q Consensus       102 ~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~~  154 (217)
                      |||+. ||||||+++    ++++++|||||||||+|++|+++|+++|+.|++.
T Consensus       184 YPGG~-FDPLgl~~~----~~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~  231 (250)
T PLN00101        184 YPGGI-FNPLNFAPT----EEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFE  231 (250)
T ss_pred             CCCCc-cCccCCCcc----HHHHHHHHhhcchHHHHHhhHhheehccCCChHH
Confidence            66664 999999865    3689999999999999999999999999999863

>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional

Probab=99.28  E-value=2.2e-12  Score=115.31  Aligned_cols=53  Identities=25%  Similarity=0.312  Sum_probs=47.3

Q ss_pred             CCCCCCCCCCCCCCC---------CchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCCC
Q 027863          101 EVPGDYGYDPFGLSK---------KPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC  154 (217)
Q Consensus       101 ~~PGD~GfDPlGL~~---------dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~~  154 (217)
                      .+||+..||||||.+         |+++++++|.+|||||||||+|++|+++|. .++.|++.
T Consensus       190 ~yPGG~~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~~  251 (255)
T PLN00170        190 GYPGGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFEA-GQGKTPLG  251 (255)
T ss_pred             ccCCCcccCccccccccccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHheee-ccCCCchh
Confidence            378887899999985         789999999999999999999999999999 57777753

>PHA02337 putative high light inducible protein

Probab=98.00  E-value=4.2e-06  Score=54.51  Aligned_cols=29  Identities=17%  Similarity=0.053  Sum_probs=26.9

Q ss_pred             HHHHHhhchhhHhhhhhhhhhhhhccCCC
Q 027863          124 QAYELIHARWAMLGAAGFIIPEAFNKFGA  152 (217)
Q Consensus       124 r~~EL~hGRlAMLa~~G~l~~e~l~~~G~  152 (217)
                      ..+|..|||+||+|++-.+..|+++++++
T Consensus         3 ~~aE~~NGRlAMiGfv~~~~~e~~tGq~i   31 (35)
T PHA02337          3 PEAEIFNGWLAMIGFVAAVGAYATTGQII   31 (35)
T ss_pred             cHHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence            36799999999999999999999999886

>PLN00014 light-harvesting-like protein 3; Provisional

Probab=97.40  E-value=4.9e-05  Score=67.82  Aligned_cols=31  Identities=23%  Similarity=0.263  Sum_probs=28.2

Q ss_pred             HHHHHHhhchhhHhhhhhhhhhhhhccCCCC
Q 027863          123 YQAYELIHARWAMLGAAGFIIPEAFNKFGAN  153 (217)
Q Consensus       123 ~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~  153 (217)
                      +..+|+.|||+||+|++-.++.|++++.|+.
T Consensus       159 l~~aE~lNGR~AMiGFvaal~~E~~TG~gll  189 (250)
T PLN00014        159 LPEAELLNGRAAMVGFFMAYLVDSLTGVGLV  189 (250)
T ss_pred             CchhHhhhhHHHHHHHHHHHHHHHHcCCcHH
Confidence            3578999999999999999999999998874

>PLN00084 photosystem II subunit S (PsbS); Provisional

Probab=96.33  E-value=0.0018  Score=56.04  Aligned_cols=34  Identities=35%  Similarity=0.441  Sum_probs=29.5

Q ss_pred             HHHHHHHHHhhchhhHhhhhhhhhhhhhc-cCCCC
Q 027863          120 FSKYQAYELIHARWAMLGAAGFIIPEAFN-KFGAN  153 (217)
Q Consensus       120 ~~~~r~~EL~hGRlAMLa~~G~l~~e~l~-~~G~~  153 (217)
                      ....+..|+-|||+||+|++-.++.|++| ++|+.
T Consensus       132 vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL  166 (214)
T PLN00084        132 VREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPL  166 (214)
T ss_pred             HHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchH
Confidence            33455679999999999999999999999 88886

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	217
1vcr_A	232	An Icosahedral Assembly Of Light-Harvesting Chlorop		2e-24
2bhw_A	232	Pea Light-Harvesting Complex Ii At 2.5 Angstrom Res		2e-24
1rwt_A	232	Crystal Structure Of Spinach Major Light-harvesting		1e-23
2wsc_2	269	Improved Model Of Plant Photosystem I Length = 269		2e-14
2o01_2	186	The Structure Of A Plant Photosystem I Supercomplex		3e-14
2wsc_1	241	Improved Model Of Plant Photosystem I Length = 241		2e-12
2o01_1	187	The Structure Of A Plant Photosystem I Supercomplex		2e-12
2wsc_4	251	Improved Model Of Plant Photosystem I Length = 251		2e-12
2wsc_3	276	Improved Model Of Plant Photosystem I Length = 276		3e-10
3lw5_1	170	Improved Model Of Plant Photosystem I Length = 170		4e-10
3pl9_A	243	Crystal Structure Of Spinach Minor Light-Harvesting		6e-07
3lw5_2	176	Improved Model Of Plant Photosystem I Length = 176		3e-05
3lw5_4	166	Improved Model Of Plant Photosystem I Length = 166		2e-04
2o01_3	165	The Structure Of A Plant Photosystem I Supercomplex		2e-04
3lw5_3	172	Improved Model Of Plant Photosystem I Length = 172		3e-04
2o01_4	165	The Structure Of A Plant Photosystem I Supercomplex		8e-04

>pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB Protein Complex From Pea Thylakoid Membranes Length = 232

Iteration: 1
 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/135 (45%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75  WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
           WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ FSK +  E+IH+RWA
Sbjct: 16  WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWA 72
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
           MLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    +    + A+ A +
Sbjct: 73  MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQ 131
Query: 192 IVLVGGAEYYRITNG 206
           ++L+G  E YRI  G
Sbjct: 132 VILMGAVEGYRIAGG 146

>pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution Length = 232

Iteration: 1
 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/135 (45%), Positives = 80/135 (59%), Gaps = 7/135 (5%)
Query: 75  WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
           WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ FSK +  E+IH+RWA
Sbjct: 16  WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWA 72
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
           MLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    +    + A+ A +
Sbjct: 73  MLGALGSVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQ 131
Query: 192 IVLVGGAEYYRITNG 206
           ++L+G  E YRI  G
Sbjct: 132 VILMGAVEGYRIAGG 146

>pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting Complex At 2.72 Angstrom Resolution Length = 232

Iteration: 1
 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/135 (44%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 75  WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
           WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWA
Sbjct: 16  WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 72
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
           MLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A +
Sbjct: 73  MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 131
Query: 192 IVLVGGAEYYRITNG 206
           ++L+G  E YRI  G
Sbjct: 132 VILMGAVEGYRIAGG 146

>pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I Length = 269

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 59/125 (47%), Gaps = 19/125 (15%)
Query: 78  PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
           PDR ++ P      S  P +L G +PGD+G+DP GL   P+        EL+H+RWAMLG
Sbjct: 62  PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLG 116
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 197
           AAG  IPE   K G    P   W+  G      +T   F            I E+V +G 
Sbjct: 117 AAGIFIPEFLTKLGILNTPS--WYTAGEQEYFTDTTTLF------------IVELVFIGW 162
Query: 198 AEYYR 202
           AE  R
Sbjct: 163 AEGRR 167

>pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 186

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 54/108 (50%), Gaps = 14/108 (12%)
Query: 95  PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
           PE+L G +PGD+G+DP GLS  P+        EL+H+RWAMLGAAG  IPE   K G   
Sbjct: 1   PEWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILN 60
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 202
            P   W+  G      +T   F            I E+V +G AE  R
Sbjct: 61  TPS--WYTAGEQEYFTDTTTLF------------IVELVFIGWAEGRR 94

>pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I Length = 241

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 95  PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
           P YL G  PGD+G+DP GL + P +  +Y+  ELIH RWAML   G ++PEA   +G   
Sbjct: 55  PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG-YGN-- 111
Query: 155 GPEAVWFKTGA-LLLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYR 202
                W K      L G    Y G  +P   +  ++A E + +   E+ R
Sbjct: 112 -----WVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR 156

>pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 187

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 95  PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
           P YL G  PGD+G+DP GL + P +  +Y+  ELIH RWAML   G ++PEA   +G   
Sbjct: 7   PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG-YGN-- 63
Query: 155 GPEAVWFKTGA-LLLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYR 202
                W K      L G    Y G  +P   +  ++A E + +   E+ R
Sbjct: 64  -----WVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR 108

>pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I Length = 251

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 95  PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
           P YLTG +PGD G+DP GL++ P++   +   EL++ RWAMLG AG ++PE F   G   
Sbjct: 63  PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIIN 122
Query: 155 GPEAVWFKTG 164
            P+  W+  G
Sbjct: 123 VPK--WYAAG 130

>pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I Length = 276

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 63/117 (53%), Gaps = 14/117 (11%)
Query: 96  EYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNK 149
            YL G +PGDYG+DP GLS  P+        K+ AY E+I+ R+AMLGA G I PE   K
Sbjct: 67  SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGK 125
Query: 150 FGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 205
            G      A+ WF+TG  +    T NY+  +  +      + E+ L+G AE+ R  +
Sbjct: 126 AGLIPQETALPWFRTG-FIPPAGTYNYWADSYTL-----FVFEMALMGFAEHRRFQD 176

>pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I Length = 170

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 10/102 (9%)
Query: 103 PGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK 162
           PGD+G+DP GL + P +  +Y+  ELIH RWAML   G ++PEA   +G        W K
Sbjct: 3   PGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG-YGN-------WVK 54
Query: 163 TGA-LLLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYR 202
                 L G    Y G  +P   +  ++A E + +   E+ R
Sbjct: 55  AQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR 96

>pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting Complex Cp29 At 2.80 Angstrom Resolution Length = 243

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 67/171 (39%), Gaps = 59/171 (34%)
Query: 76  YGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD----------------- 118
           +  DR ++ P      ++ PEYL G + GDYG+DPFGL K  +                 
Sbjct: 7   FSTDRPLWYP-----GAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNL 61
Query: 119 --------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152
                                        +++  ELIH RWAML   G +  E       
Sbjct: 62  AGDIIGTRTESADVKSTSLQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEGLTGI-- 119
Query: 153 NCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 202
                  W   G + L++G++  Y G+ +P ++   +  E++++G  E+ R
Sbjct: 120 ------TWQDAGKVELIEGSS--YLGQPLPFSMTTLIWIEVLVIGYIEFQR 162

>pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I Length = 176

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 35/76 (46%), Gaps = 14/76 (18%)
Query: 127 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVF 186
           EL+H+RWAMLGAAG  IPE   K G    P   W+  G      +T   F          
Sbjct: 13  ELVHSRWAMLGAAGIFIPEFLTKLGILNTPS--WYTAGEQEYFTDTTTLF---------- 60
Query: 187 AVIAEIVLVGGAEYYR 202
             I E+V +G AE  R
Sbjct: 61  --IVELVFIGWAEGRR 74

>pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 113 LSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 164
           L++ P++   +   EL++ RWAMLG AG ++PE F   G    P+  W+  G
Sbjct: 1   LAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPK--WYAAG 50

>pdb|2O01|3 Chain 3, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 165

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 127 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLV 185
           E+I+ R+AMLGAAG I PE   K G      A+ WF+TG +   G T  Y+  N  +   
Sbjct: 6   EIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAG-TYTYWADNYTL--- 61
Query: 186 FAVIAEIVLVGGAEYYRITN 205
              + E+ L+G AE+ R+ +
Sbjct: 62  --FVLEMALMGFAEHRRLQD 79

>pdb|3LW5|3 Chain 3, Improved Model Of Plant Photosystem I Length = 172

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 8/86 (9%)
Query: 122 KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKN 179
           ++ AY E+I+ R+AMLGA G I PE   K G      A+ WF+TG +   G T NY+  N
Sbjct: 13  RWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAG-TYNYWADN 71
Query: 180 IPINLVFAVIAEIVLVGGAEYYRITN 205
             +      + E+ L+G AE+ R  +
Sbjct: 72  YTL-----FVLEMALMGFAEHRRFQD 92

>pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 165

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 117 PDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 164
           P++   +   EL++ RWAMLG AG ++PE F   G    P+  W+  G
Sbjct: 1   PENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPK--WYAAG 46

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	217
2bhw_A	232	Chlorophyll A-B binding protein AB80; LHC-II, phot	1e-28
2wsc_2	269	LHCA2, type II chlorophyll A/B binding protein fro	9e-25
2wsc_2	269	LHCA2, type II chlorophyll A/B binding protein fro	4e-04
2wsc_4	251	Chlorophyll A-B binding protein P4, chloroplastic;	3e-22
2wsc_3	276	LHCA3, type II chlorophyll A/B binding protein fro	3e-20
2wsc_3	276	LHCA3, type II chlorophyll A/B binding protein fro	2e-04
2wsc_1	241	AT3G54890, LHCA1; photosynthesis, electron transfe	1e-18
3pl9_A	243	Chlorophyll A-B binding protein; CP29, light-harve	5e-16

>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Length = 232

 Score =  106 bits (264), Expect = 1e-28
 Identities = 61/153 (39%), Positives = 83/153 (54%), Gaps = 7/153 (4%)

Query: 61  KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
           K      V    + WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F
Sbjct: 2   KSATTKKVASSGSPWYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETF 58

Query: 121 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI 180
           SK +  E+IH+RWAMLGA G + PE  ++ G     EAVWFK G+ +     L+Y G   
Sbjct: 59  SKNRELEVIHSRWAMLGALGSVFPELLSRNGVKF-GEAVWFKAGSQIFSEGGLDYLGNPS 117

Query: 181 PIN---LVFAVIAEIVLVGGAEYYRITNGFGGQ 210
            ++   ++     +++L+G  E YRI  G  G+
Sbjct: 118 LVHAQSILAIWATQVILMGAVEGYRIAGGPLGE 150

>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Length = 269

 Score = 97.1 bits (240), Expect = 9e-25
 Identities = 51/181 (28%), Positives = 76/181 (41%), Gaps = 23/181 (12%)

Query: 1   MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKS 60
           MAS  ASS  AA           ++  S+ +  +P  ++ +       F  +K    + +
Sbjct: 1   MASACASSAIAAV---------AISTPSSQKNGSPSGTSKA-------FLGRKLKVNSST 44

Query: 61  KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
              +       +     PDR ++ P      S  P +L G +PGD+G+DP GL   P+  
Sbjct: 45  ASPSRVRSTSTVCTVAEPDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESL 99

Query: 121 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI 180
                 EL+H+RWAMLGAAG  IPE   K G    P   W+  G      +T   F   +
Sbjct: 100 RWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTP--SWYTAGEQEYFTDTTTLFIVEL 157

Query: 181 P 181
            
Sbjct: 158 V 158

>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Length = 269

 Score = 39.3 bits (90), Expect = 4e-04
 Identities = 23/134 (17%), Positives = 36/134 (26%), Gaps = 3/134 (2%)

Query: 19  MLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
           MLG          T     + PS +   A   +             V     E  +W   
Sbjct: 114 MLGAAGIFIPEFLTKLGILNTPSWYT--AGEQEYFTDTTTLFIVELVFIGWAEGRRWADI 171

Query: 79  DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKK-PDDFSKYQAYELIHARWAMLG 137
                +    +  +          PG   +DP G     P    + +  E+ + R AML 
Sbjct: 172 LNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLA 231

Query: 138 AAGFIIPEAFNKFG 151
             G      +   G
Sbjct: 232 VMGAWFQHIYTGTG 245

>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Length = 251

 Score = 90.5 bits (223), Expect = 3e-22
 Identities = 44/176 (25%), Positives = 67/176 (38%), Gaps = 19/176 (10%)

Query: 26  VSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLP 85
            +SA      G  +          ++  A  P    P A   V  +  +W          
Sbjct: 7   QASAAIFGPCGLKSRFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPG------- 59

Query: 86  EGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 145
                    P YLTG +PGD G+DP GL++ P++   +   EL++ RWAMLG AG ++PE
Sbjct: 60  ------LASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPE 113

Query: 146 AFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYY 201
            F   G    P   W+  G      ++   F     I  + +   EI      +  
Sbjct: 114 VFTSIGIINVP--KWYAAGKEEYFASSSTLF----VIEFILSHYVEIRRWQDIKNP 163

>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Length = 276

 Score = 85.6 bits (210), Expect = 3e-20
 Identities = 43/187 (22%), Positives = 72/187 (38%), Gaps = 15/187 (8%)

Query: 27  SSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPE 86
           + A+ +S+    +    +        ++      K   +           G DR ++   
Sbjct: 3   AQALVSSSSLTFSAEAARQSLGPRSLQSPFGFSRKASFLVKAAATPPVKQGSDRPLWFAS 62

Query: 87  GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD-----DFSKYQAYELIHARWAMLGAAGF 141
                 +   YL G +PGDYG+DP GLS         +       E+I+ R+AMLGA G 
Sbjct: 63  K-----QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGA 117

Query: 142 IIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYY 201
           I PE   K G      A+ +     +    T NY+  +  +      + E+ L+G AE+ 
Sbjct: 118 IAPEILGKAGLIPQETALPWFRTGFIPPAGTYNYWADSYTL-----FVFEMALMGFAEHR 172

Query: 202 RITNGFG 208
           R  +   
Sbjct: 173 RFQDWAK 179

>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Length = 276

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 12/49 (24%), Positives = 19/49 (38%)

Query: 103 PGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
           PG   ++P G  K        +  E+ + R AML   G+ +       G
Sbjct: 204 PGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVG 252

>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Length = 241

 Score = 80.1 bits (196), Expect = 1e-18
 Identities = 45/192 (23%), Positives = 68/192 (35%), Gaps = 26/192 (13%)

Query: 26  VSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLP 85
            S+++ +    A  PS              P   +  V    +    A W          
Sbjct: 2   ASNSLMSCGIAAVYPSLLSSSKSKFVSAGVPLPNAGNVGRIRM---AAHW---------- 48

Query: 86  EGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 145
              +     P YL G  PGD+G+DP GL + P +  +Y+  ELIH RWAML   G ++PE
Sbjct: 49  ---MPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPE 105

Query: 146 AFNKFGANCGPEAVWFKTGALLL-DGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRI 203
           A             W K        G    Y G  +P   +  ++A E + +   E+ R 
Sbjct: 106 ALGYGN--------WVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRS 157

Query: 204 TNGFGGQASPRW 215
                 +     
Sbjct: 158 MEKDPEKKKYPG 169

>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Length = 243

 Score = 73.2 bits (178), Expect = 5e-16
 Identities = 39/180 (21%), Positives = 63/180 (35%), Gaps = 57/180 (31%)

Query: 73  AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD-------------- 118
              +  DR ++ P       + PEYL G + GDYG+DPFGL K  +              
Sbjct: 4   KSGFSTDRPLWYPGA-----KAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLA 58

Query: 119 -----------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNK 149
                                           +++  ELIH RWAML   G +  E    
Sbjct: 59  KNLAGDIIGTRTESADVKSTSLQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEGLTG 118

Query: 150 FGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGFGG 209
                     W   G + L   + +Y G+ +P ++   +  E++++G  E+ R       
Sbjct: 119 I--------TWQDAGKVELIEGS-SYLGQPLPFSMTTLIWIEVLVIGYIEFQRNAELDTE 169

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	217
2bhw_A	232	Chlorophyll A-B binding protein AB80; LHC-II, phot	100.0
3pl9_A	243	Chlorophyll A-B binding protein; CP29, light-harve	100.0
2wsc_2	269	LHCA2, type II chlorophyll A/B binding protein fro	99.97
2wsc_4	251	Chlorophyll A-B binding protein P4, chloroplastic;	99.96
2wsc_3	276	LHCA3, type II chlorophyll A/B binding protein fro	99.96
2wsc_1	241	AT3G54890, LHCA1; photosynthesis, electron transfe	99.94
3pl9_A	243	Chlorophyll A-B binding protein; CP29, light-harve	99.48
2wsc_3	276	LHCA3, type II chlorophyll A/B binding protein fro	99.47
2bhw_A	232	Chlorophyll A-B binding protein AB80; LHC-II, phot	99.46
2wsc_2	269	LHCA2, type II chlorophyll A/B binding protein fro	99.43
2wsc_1	241	AT3G54890, LHCA1; photosynthesis, electron transfe	99.34
2wsc_4	251	Chlorophyll A-B binding protein P4, chloroplastic;	99.17

>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*

Probab=100.00  E-value=1.9e-36  Score=264.06  Aligned_cols=130  Identities=44%  Similarity=0.866  Sum_probs=112.7

Q ss_pred             hhhhhCCCCccccCcCccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCC
Q 027863           72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG  151 (217)
Q Consensus        72 ~~~w~g~~R~~~lp~g~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G  151 (217)
                      .++|||+||++|||  +++ .++|+||||++||||||||+||++|+|+++|||++|||||||||||++|++++|++++.|
T Consensus        13 ~~~~~~~~r~~~l~--~~~-~~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~G   89 (232)
T 2bhw_A           13 GSPWYGPDRVKYLG--PFS-GESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNG   89 (232)
T ss_dssp             TCTTSSTTCCCTTG--GGC-CSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CCcccCCCcccccC--ccc-cCCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhccCC
Confidence            45899999999994  344 589999999999999999999999999999999999999999999999999999999877


Q ss_pred             CCCCCCcccccccccccCCCccCCCCCCchh---hHHHHHHHHHHHHhhhhheeccC
Q 027863          152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITN  205 (217)
Q Consensus       152 ~~~~p~~~Wf~AG~~~~~~~~l~Ylg~~~p~---~~~~li~~evlLmG~~E~~R~~g  205 (217)
                      +.. ++..||++|...+++..++|+++|...   .+..++++|+++||++|.+|+.+
T Consensus        90 ~~~-~~~~w~~ag~~~~~~~~~~~~~~P~~~~~q~i~~~~~~q~~~~g~~E~~r~~~  145 (232)
T 2bhw_A           90 VKF-GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG  145 (232)
T ss_dssp             CCC-SCCSGGGSGGGGGSTTCEEGGGCTTSEEECCHHHHHHHHHHHHHHHHHHHHHE
T ss_pred             cCC-cccccccccchhccccchhcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            644 367899999887877778899887532   24455678999999999998865

>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}

Probab=100.00  E-value=4.2e-35  Score=257.37  Aligned_cols=117  Identities=33%  Similarity=0.738  Sum_probs=68.9

Q ss_pred             hhCCCCccccCcCccCCCCCCCCCCCCCCCCCCCCCCCCCCCch------------------------------------
Q 027863           75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD------------------------------------  118 (217)
Q Consensus        75 w~g~~R~~~lp~g~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe------------------------------------  118 (217)
                      +++++|++|||+     .++|+||||++||||||||+||+++||                                    
T Consensus         6 ~~~~~r~~w~pg-----~~~P~~LdGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~   80 (243)
T 3pl9_A            6 GFSTDRPLWYPG-----AKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSL   80 (243)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCcccccccCC-----CCCcccccCCCCCcCCCCccccCCChhhhccccccchhhhhcccccccccccccccccccccc
Confidence            445799999996     899999999999999999999999987                                    


Q ss_pred             -------hHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCCCCCCcccccccccccCCCccCCCCCCchhhHHHHHHHH
Q 027863          119 -------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE  191 (217)
Q Consensus       119 -------~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~~~p~~~Wf~AG~~~~~~~~l~Ylg~~~p~~~~~li~~e  191 (217)
                             .++|||++||+||||||||++||+++|++++        ..||++|++.+.+ .++|++++.++++..++++|
T Consensus        81 ~~~~~~~~l~r~ReaELkHGRwAMLAvlG~lvpE~l~g--------~~W~~aG~~~~~~-g~~y~g~p~~~~i~~l~~~q  151 (243)
T 3pl9_A           81 QPYSEVFGLQRFRECELIHGRWAMLATLGALTVEGLTG--------ITWQDAGKVELIE-GSSYLGQPLPFSMTTLIWIE  151 (243)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--------CCTTTHHHHHHHS-CEEETTEEECCCHHHHHHHH
T ss_pred             ccccchhhhHHHHHhhhhcchhHHHHHHHHHhHHhhcC--------ccccccccccccc-ccccccCccchhhHHHHHHH
Confidence                   3789999999999999999999999999862        4699999987654 37899998888877888899


Q ss_pred             HHHHhhhhheeccC
Q 027863          192 IVLVGGAEYYRITN  205 (217)
Q Consensus       192 vlLmG~~E~~R~~g  205 (217)
                      +++||++|.+|+++
T Consensus       152 v~lmG~~E~~R~~~  165 (243)
T 3pl9_A          152 VLVIGYIEFQRNAE  165 (243)
T ss_dssp             HHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhhcc
Confidence            99999999999976

>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*

Probab=99.97  E-value=9.2e-34  Score=252.01  Aligned_cols=116  Identities=39%  Similarity=0.773  Sum_probs=65.3

Q ss_pred             hhhhhhCCCCccccCcCccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccC
Q 027863           71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF  150 (217)
Q Consensus        71 ~~~~w~g~~R~~~lp~g~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~  150 (217)
                      .+..+||++|++|||+     .++|+||+|++||||||||+||++|+|++++||++||+||||||||++|++++|++++.
T Consensus        55 ~~~~~~~~~r~~wlpg-----~~~P~~L~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~  129 (269)
T 2wsc_2           55 TVCTVAEPDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKL  129 (269)
T ss_dssp             --------------------------------------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCT
T ss_pred             eeecccCCCcccccCC-----CCCcccccCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccC
Confidence            3456899999999995     78999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcccccccccccCCCccCCCCCCchhhHHHHHHHHHHHHhhhhheeccC
Q 027863          151 GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN  205 (217)
Q Consensus       151 G~~~~p~~~Wf~AG~~~~~~~~l~Ylg~~~p~~~~~li~~evlLmG~~E~~R~~g  205 (217)
                      |+++  .+.||++|..       +||.++.     .++++|+++||++|.+|+++
T Consensus       130 G~~~--~p~w~~aG~~-------~~~~~~~-----~l~~~qi~liG~~E~~r~~~  170 (269)
T 2wsc_2          130 GILN--TPSWYTAGEQ-------EYFTDTT-----TLFIVELVFIGWAEGRRWAD  170 (269)
T ss_dssp             TSSS--CCCCCSTTSS-------SSCCCTT-----SHHHHHTTHHHHHHHHHHTT
T ss_pred             Cccc--Cccccccchh-------hhhcchH-----HHHHHHHHHHHHHHHHHHhc
Confidence            8875  3569998753       5776642     23567899999999999754

>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*

Probab=99.96  E-value=7.2e-32  Score=237.74  Aligned_cols=115  Identities=34%  Similarity=0.698  Sum_probs=67.3

Q ss_pred             hhhhhCC-CCccccCcCccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccC
Q 027863           72 LAKWYGP-DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF  150 (217)
Q Consensus        72 ~~~w~g~-~R~~~lp~g~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~  150 (217)
                      +..+||+ ||++|+|+     .++|.||||++||||||||+||++|+|+++++|++||+||||||||++|++++|++++.
T Consensus        44 ~~~~~~~~~r~~~~pg-----~~~p~~l~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~  118 (251)
T 2wsc_4           44 SASFKVEAKKGEWLPG-----LASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSI  118 (251)
T ss_dssp             ------------------------------------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCS
T ss_pred             cccccCcchhhhccCC-----CCCccccCCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCC
Confidence            3468999 89999985     78999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcccccccccccCCCccCCCCCCchhhHHHHHHHHHHHHhhhhheeccC
Q 027863          151 GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN  205 (217)
Q Consensus       151 G~~~~p~~~Wf~AG~~~~~~~~l~Ylg~~~p~~~~~li~~evlLmG~~E~~R~~g  205 (217)
                      |++.  .+.||++|..       +|++++..     ++++|+++||++|.+|+++
T Consensus       119 g~~~--~p~w~~aG~~-------~~~~~~~~-----l~~~qi~liG~~E~~r~~~  159 (251)
T 2wsc_4          119 GIIN--VPKWYAAGKE-------EYFASSST-----LFVIEFILSHYVEIRRWQD  159 (251)
T ss_dssp             CSSC--CCCCSCCCSS-------SCSSCSSC-----TTTTHHHHHHTTTHHHHHH
T ss_pred             CccC--CccccccchH-------hhhccchH-----HHHHHHHHHHHHHHHHhhc
Confidence            9875  3579998763       57776532     2356888999999999764

>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*

Probab=99.96  E-value=3.7e-31  Score=235.98  Aligned_cols=118  Identities=36%  Similarity=0.649  Sum_probs=67.3

Q ss_pred             hCCCCccccCcCccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhH------HHHHHHHHhhchhhHhhhhhhhhhhhhcc
Q 027863           76 YGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF------SKYQAYELIHARWAMLGAAGFIIPEAFNK  149 (217)
Q Consensus        76 ~g~~R~~~lp~g~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe~~------~~~r~~EL~hGRlAMLa~~G~l~~e~l~~  149 (217)
                      ||+||++|||+     .++|+||||++||||||||+|| .|++++      +++|++||+||||||||++|++++|++++
T Consensus        52 ~g~~R~~wlP~-----~~~P~~L~G~~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~  125 (276)
T 2wsc_3           52 QGSDRPLWFAS-----KQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGK  125 (276)
T ss_dssp             ---------------------------------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSS
T ss_pred             cCCCccccCCC-----CCCcccccCcCCCccCCCcccc-CChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhcc
Confidence            89999999995     7899999999999999999999 688999      99999999999999999999999999999


Q ss_pred             CCCCCCC-CcccccccccccCCCccCCCCCCchhhHHHHHHHHHHHHhhhhheeccC
Q 027863          150 FGANCGP-EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN  205 (217)
Q Consensus       150 ~G~~~~p-~~~Wf~AG~~~~~~~~l~Ylg~~~p~~~~~li~~evlLmG~~E~~R~~g  205 (217)
                      .|++... ...||+++.+.. .+.++||+++.     .++++|+++||++|.+|+++
T Consensus       126 ~g~~~~~~p~~w~~~g~ip~-aG~~~~~~~~~-----~l~~~qi~liG~~E~~r~~~  176 (276)
T 2wsc_3          126 AGLIPQETALPWFRTGFIPP-AGTYNYWADSY-----TLFVFEMALMGFAEHRRFQD  176 (276)
T ss_dssp             CCCCCCSSCCSSSSCCCC------CCCSCCCC-----STTHHHHHHTHHHHTTTTTG
T ss_pred             cccccccCcchhhhhhcccc-hhHHHHhccch-----HHHHHHHHHHHHHHHhhhcc
Confidence            9987422 235999887543 34478998763     24567899999999999764

>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*

Probab=99.94  E-value=6.5e-28  Score=211.59  Aligned_cols=114  Identities=34%  Similarity=0.712  Sum_probs=78.6

Q ss_pred             CCccccCcCccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCCCCCCc
Q 027863           79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEA  158 (217)
Q Consensus        79 ~R~~~lp~g~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~~~p~~  158 (217)
                      .|.+|+|+     ...|+||+|++||||||||+||++|+|+++++|++||+||||||||++|+++||+++.        .
T Consensus        44 m~~~w~P~-----~~~P~~L~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~--------~  110 (241)
T 2wsc_1           44 MAAHWMPG-----EPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGY--------G  110 (241)
T ss_dssp             ----------------------CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCC--------C
T ss_pred             cccccCCC-----CCCcccccCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccC--------C
Confidence            45679995     7899999999999999999999999999999999999999999999999999999753        2


Q ss_pred             cccccccc-ccCCCccCCCCCCchh-hHHHHHHHHHHHHhhhhheeccC
Q 027863          159 VWFKTGAL-LLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITN  205 (217)
Q Consensus       159 ~Wf~AG~~-~~~~~~l~Ylg~~~p~-~~~~li~~evlLmG~~E~~R~~g  205 (217)
                      .|++++.. .+.++..+|++++.++ .+..++++|+++||++|.+|+.+
T Consensus       111 ~~~~a~~~~~~~~g~a~~~~~~~~~~~~~~i~~iq~l~ig~~E~~r~~~  159 (241)
T 2wsc_1          111 NWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSME  159 (241)
T ss_dssp             -----CCCCSCSSCSSCCSSSCSSSSSHHHHHHHHHHHTHHHHHHHTSC
T ss_pred             ccccccchhccCCcchhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            47776652 3456667899887765 35566688999999999998743

>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}

Probab=99.48  E-value=1e-14  Score=128.15  Aligned_cols=52  Identities=37%  Similarity=0.589  Sum_probs=49.9

Q ss_pred             CCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCC
Q 027863          101 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN  153 (217)
Q Consensus       101 ~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~  153 (217)
                      .+|||+ |||+||.+|+++++++|++||+||||||+|++|+++|+++|+.|++
T Consensus       172 ~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl  223 (243)
T 3pl9_A          172 LYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPL  223 (243)
T ss_dssp             TCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred             cCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCChH
Confidence            589999 9999999999999999999999999999999999999999998875

>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*

Probab=99.47  E-value=6.6e-15  Score=131.36  Aligned_cols=56  Identities=21%  Similarity=0.414  Sum_probs=47.2

Q ss_pred             CCCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCCC
Q 027863           99 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC  154 (217)
Q Consensus        99 ~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~~  154 (217)
                      |..+|||++|||+||.+++++++++|++||+||||||||++|+++||++++.|++.
T Consensus       200 d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~  255 (276)
T 2wsc_3          200 EPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQ  255 (276)
T ss_dssp             SCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSC
T ss_pred             cccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHH
Confidence            44689999999999999888899999999999999999999999999999998764

>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*

Probab=99.46  E-value=2.8e-14  Score=124.34  Aligned_cols=54  Identities=30%  Similarity=0.568  Sum_probs=50.9

Q ss_pred             CCCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCC
Q 027863           99 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN  153 (217)
Q Consensus        99 ~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~  153 (217)
                      +..+|||+ |||+||.+|+++++++|.+||+||||||+|++|+++||++++.|++
T Consensus       153 d~~~Pg~~-fdPlgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~  206 (232)
T 2bhw_A          153 DPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL  206 (232)
T ss_dssp             SSSCCCTT-SCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSH
T ss_pred             cccCCCcc-cccchhccchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChH
Confidence            45689998 9999999999999999999999999999999999999999998875

>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*

Probab=99.43  E-value=1.6e-14  Score=128.52  Aligned_cols=56  Identities=23%  Similarity=0.418  Sum_probs=51.3

Q ss_pred             CCCCCCCCCCCCCCCCC-CchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCCC
Q 027863           99 TGEVPGDYGYDPFGLSK-KPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC  154 (217)
Q Consensus        99 ~G~~PGD~GfDPlGL~~-dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~~  154 (217)
                      +..+|||++|||+||.+ |+|+++++|++||+||||||||++|+++||++++.|++.
T Consensus       192 d~~~PG~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~  248 (269)
T 2wsc_2          192 DVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID  248 (269)
T ss_dssp             SCSCTTCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSC
T ss_pred             ccCCCCCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHH
Confidence            34689999999999984 788899999999999999999999999999999999864

>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*

Probab=99.34  E-value=1.6e-13  Score=120.31  Aligned_cols=55  Identities=29%  Similarity=0.583  Sum_probs=49.9

Q ss_pred             CCCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhh-hhccCCCCC
Q 027863           99 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE-AFNKFGANC  154 (217)
Q Consensus        99 ~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e-~l~~~G~~~  154 (217)
                      ++.+||| +|||+||.+|+++++++|.+||+|||+||+|++|+++|+ ++++.|++.
T Consensus       164 ~~~yPgg-~fDPlgl~~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~  219 (241)
T 2wsc_1          164 KKKYPGG-AFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE  219 (241)
T ss_dssp             CSSSCSC-CSCSSSCSCSSSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCC
T ss_pred             CCCCCCC-cccccccccchhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchHH
Confidence            4578999 599999999999999999999999999999999999999 578888763

>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*

Probab=99.17  E-value=6.1e-12  Score=110.83  Aligned_cols=48  Identities=25%  Similarity=0.421  Sum_probs=43.5

Q ss_pred             CCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCCC
Q 027863          101 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC  154 (217)
Q Consensus       101 ~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~~  154 (217)
                      .+|||+ |||+|+.+    ++++|.+||||||| |+|++|+++|+++|+.|++.
T Consensus       183 ~yPGg~-FDPLgl~~----~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl~  230 (251)
T 2wsc_4          183 GYPGGI-FNPLNFAP----TLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFD  230 (251)
T ss_dssp             HSSCCT-TCCCCCCS----SSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCCC
T ss_pred             cCCCCc-cCccchhH----HHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHHH
Confidence            479998 99999975    66789999999999 99999999999999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	217
d1rwta_	218	f.43.1.1 (A:) Chlorophyll a-b binding protein {Spi	3e-35
d1rwta_	218	f.43.1.1 (A:) Chlorophyll a-b binding protein {Spi	3e-04

>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 218

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  122 bits (306), Expect = 3e-35
 Identities = 59/140 (42%), Positives = 79/140 (56%), Gaps = 7/140 (5%)

Query: 73  AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 132
           + WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH R
Sbjct: 1   SPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCR 57

Query: 133 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVI 189
           WAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    ++   ++    
Sbjct: 58  WAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 116

Query: 190 AEIVLVGGAEYYRITNGFGG 209
            +++L+G  E YRI  G  G
Sbjct: 117 CQVILMGAVEGYRIAGGPLG 136

>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 218

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score = 38.5 bits (89), Expect = 3e-04
 Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 4/80 (5%)

Query: 102 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWF 161
           +     +DP GL+  P+ F++ +  E+ + R AM    GF +           GP     
Sbjct: 142 LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT----GKGPLENLA 197

Query: 162 KTGALLLDGNTLNYFGKNIP 181
              A  ++ N  N+    +P
Sbjct: 198 DHLADPVNNNAWNFATNFVP 217

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	217
d1rwta_	218	Chlorophyll a-b binding protein {Spinach (Spinacia	99.98
d1rwta_	218	Chlorophyll a-b binding protein {Spinach (Spinacia	99.49

>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.98  E-value=1.9e-33  Score=239.34  Aligned_cols=129  Identities=44%  Similarity=0.903  Sum_probs=108.9

Q ss_pred             hhhhCCCCccccCcCccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCC
Q 027863           73 AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA  152 (217)
Q Consensus        73 ~~w~g~~R~~~lp~g~~~~~~~P~yL~G~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~  152 (217)
                      ++|||+||++|+|  ++. ++.|+||||++|||||||||||++|+++++++|++|||||||||||++|++++|++++.+.
T Consensus         1 ~~~~~~~r~~~~~--~~~-~~~P~~LdGs~pGD~GFDPLgls~d~~~~~~~ReaELKHGR~AMLA~vG~~~~E~~~~~~~   77 (218)
T d1rwta_           1 SPWYGPDRVKYLG--PFS-GESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV   77 (218)
T ss_dssp             CTTSSTTCCCTTG--GGG-CSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCCCCCCCcccCC--ccc-cCCCcccCCCCCCCCCcCCcccCCCHHHHHHHHHHHHhhceehHhhhcceeehhhhccCCC
Confidence            3799999999996  233 6789999999999999999999999999999999999999999999999999999998876


Q ss_pred             CCCCCcccccccccccCCCccCCCCCCchh---hHHHHHHHHHHHHhhhhheeccC
Q 027863          153 NCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITN  205 (217)
Q Consensus       153 ~~~p~~~Wf~AG~~~~~~~~l~Ylg~~~p~---~~~~li~~evlLmG~~E~~R~~g  205 (217)
                      ... +..|++++......+.+++++.+...   .++.++++++++++.+|.+|..+
T Consensus        78 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  132 (218)
T d1rwta_          78 KFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG  132 (218)
T ss_dssp             CCS-CCSHHHHGGGGGSTTCBCGGGCTTSCCBCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCC-CcccccccccccCcchhhhhcCchHHHHHHHHHHHHHHHHHHhhhhhhcccC
Confidence            543 57899998887776777777665432   34445567899999999988654

>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.49  E-value=2.9e-15  Score=126.34  Aligned_cols=52  Identities=29%  Similarity=0.607  Sum_probs=47.6

Q ss_pred             CCCCCCCCCCCCCCCCchhHHHHHHHHHhhchhhHhhhhhhhhhhhhccCCCC
Q 027863          101 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN  153 (217)
Q Consensus       101 ~~PGD~GfDPlGL~~dpe~~~~~r~~EL~hGRlAMLa~~G~l~~e~l~~~G~~  153 (217)
                      .++|+ +|||+++.+++|+++++|++|||||||||||++||++||++|+.|++
T Consensus       142 ~~~~g-~fdPlg~~~~~e~~~~~k~kElkNGRLAMlAi~G~~~qe~vtG~gp~  193 (218)
T d1rwta_         142 LYPGG-SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL  193 (218)
T ss_dssp             SCCCG-GGCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHH
T ss_pred             CCCCC-CccccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCHH
Confidence            34444 79999999999999999999999999999999999999999998875