Citrus Sinensis ID: 027878

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------
MDTNGTDIDVVGHTCTQQEYEIHDLFFANLNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFSTPNLLRELNLKVCKLSTGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVIDFINGKRFSEL
cccccHHHHHcccEEEEccEEEEEEEEccEEEEEEEEccccHHHHHHHHHHHHHHccccEEEEEcccccccccccccccEEEEEEEEEEcccccccccccccccccccccccHHHHHcccEEEEEEccccccccHHHHHHHHHccccEEEccHHHHHHHHHHccccEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
cccccEEEEEEEEEEEEEEEEEEEEEEccccEEEEEEccccHHHHHHHHHHHHHHccccEEEEcccccccccccccEcEEEEEccEEEcccccccccccccccccccHcccHHHHHHHcccEEEEEEcccccccHHHHHHHHcccccHHHHHHHHHHHHHHHccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHccc
mdtngtdidvvghtctqqeyEIHDLFFANLNLILSEVDSVGTISASLVTYASIQalkpdliinagtaggfkakgasigdvflisdvafhdrripipvfdlygvgqrqafstpnllRELNLKVcklstgdsldmssqdetsitandatIKDMEGAAVAYVADLFKVPALFVKAVTdlvdgdkptAEEFMQNLVAVTAALEQSVSQVIDFIngkrfsel
mdtngtdidvvGHTCTQQEYEIHDLFFANLNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFSTPNLLRELNLKVCKLStgdsldmssqdeTSITANDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVIDFINGKRFSEL
MDTNGTDIDVVGHTCTQQEYEIHDLFFANLNLILSEVDSVGTISASLVTYASIQALKPDLIINagtaggfkakgaSIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFSTPNLLRELNLKVCKLSTGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVIDFINGKRFSEL
*******IDVVGHTCTQQEYEIHDLFFANLNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFSTPNLLRELNLKVCKLS********************TIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVIDFIN*******
***NGTDIDVVGHTCTQQEYEIHDLFFANLNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFSTPNLLRELNLKVCKLSTGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVIDFINGK*****
MDTNGTDIDVVGHTCTQQEYEIHDLFFANLNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFSTPNLLRELNLKVCKLSTGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVIDFINGKRFSEL
**TNGTDIDVVGHTCTQQEYEIHDLFFANLNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFSTPNLLRELNLKVCKLSTGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVIDFINGKR****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDTNGTDIDVVGHTCTQQEYEIHDLFFANLNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFSTPNLLRELNLKVCKLSTGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVIDFINGKRFSEL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query217 2.2.26 [Sep-21-2011]
Q9T0I8267 5'-methylthioadenosine/S- yes no 0.834 0.677 0.784 4e-81
Q7XA67254 5'-methylthioadenosine/S- no no 0.834 0.712 0.718 4e-75
A6VPH1230 5'-methylthioadenosine/S- yes no 0.672 0.634 0.311 9e-12
Q0I5K4229 5'-methylthioadenosine/S- yes no 0.829 0.786 0.286 4e-11
B0URX4229 5'-methylthioadenosine/S- yes no 0.755 0.716 0.293 4e-11
Q8CP08228 5'-methylthioadenosine/S- yes no 0.682 0.649 0.306 6e-11
Q5HNU8228 5'-methylthioadenosine/S- yes no 0.682 0.649 0.306 6e-11
Q6LUR4232 5'-methylthioadenosine/S- yes no 0.668 0.625 0.263 1e-10
A0KZQ7236 5'-methylthioadenosine/S- yes no 0.654 0.601 0.299 1e-10
A0KIZ1230 5'-methylthioadenosine/S- yes no 0.728 0.686 0.295 2e-10
>sp|Q9T0I8|MTN1_ARATH 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 OS=Arabidopsis thaliana GN=MTN1 PE=1 SV=1 Back     alignment and function desciption
 Score =  300 bits (769), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 142/181 (78%), Positives = 165/181 (91%)

Query: 37  VDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIP 96
           +DSVGT+ ASL+T+ASIQALKPD+IINAGT GGFK KGA+IGDVFL+SDV FHDRRIPIP
Sbjct: 87  IDSVGTVPASLITFASIQALKPDIIINAGTCGGFKVKGANIGDVFLVSDVVFHDRRIPIP 146

Query: 97  VFDLYGVGQRQAFSTPNLLRELNLKVCKLSTGDSLDMSSQDETSITANDATIKDMEGAAV 156
           +FDLYGVG RQAFSTPNLL+ELNLK+ +LSTGDSLDMS+QDET I ANDAT+KDMEGAAV
Sbjct: 147 MFDLYGVGLRQAFSTPNLLKELNLKIGRLSTGDSLDMSTQDETLIIANDATLKDMEGAAV 206

Query: 157 AYVADLFKVPALFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVIDFINGKRFSE 216
           AYVADL K+P +F+KAVTDLVDGDKPTAEEF+QNL  VTAALE + ++VI+FING+  S+
Sbjct: 207 AYVADLLKIPVVFLKAVTDLVDGDKPTAEEFLQNLTVVTAALEGTATKVINFINGRNLSD 266

Query: 217 L 217
           L
Sbjct: 267 L 267
Enzyme of the methionine cycle that catalyzes the irreversible cleavage of the glycosidic bond in 5'-methylthioadenosine (MTA) to adenine and 5'-methylthioribose. Contributes to the maintenance of AdoMet homeostasis and is required to sustain high rates of ethylene synthesis. Inactive towards S-adenosylhomocysteine (SAH/AdoHcy).
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 2EC: .EC: 9
>sp|Q7XA67|MTN2_ARATH 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 OS=Arabidopsis thaliana GN=MTN2 PE=1 SV=1 Back     alignment and function description
>sp|A6VPH1|MTNN_ACTSZ 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=mtnN PE=3 SV=1 Back     alignment and function description
>sp|Q0I5K4|MTNN_HAES1 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Haemophilus somnus (strain 129Pt) GN=mtnN PE=3 SV=1 Back     alignment and function description
>sp|B0URX4|MTNN_HAES2 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Haemophilus somnus (strain 2336) GN=mtnN PE=3 SV=1 Back     alignment and function description
>sp|Q8CP08|MTNN_STAES 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=mtnN PE=3 SV=1 Back     alignment and function description
>sp|Q5HNU8|MTNN_STAEQ 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=mtnN PE=3 SV=1 Back     alignment and function description
>sp|Q6LUR4|MTNN_PHOPR 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Photobacterium profundum GN=mtnN PE=3 SV=1 Back     alignment and function description
>sp|A0KZQ7|MTNN_SHESA 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Shewanella sp. (strain ANA-3) GN=mtnN PE=3 SV=1 Back     alignment and function description
>sp|A0KIZ1|MTNN_AERHH 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=mtnN PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query217
255576741266 mta/sah nucleosidase, putative [Ricinus 0.834 0.680 0.856 4e-84
224078057263 predicted protein [Populus trichocarpa] 0.889 0.733 0.804 2e-83
224105257263 predicted protein [Populus trichocarpa] 0.834 0.688 0.839 5e-83
217073232262 unknown [Medicago truncatula] 0.870 0.721 0.774 5e-82
357467479261 5'-methylthioadenosine/S-adenosylhomocys 0.870 0.724 0.774 5e-82
449524090266 PREDICTED: 5'-methylthioadenosine/S-aden 0.889 0.725 0.778 4e-81
448872668283 5'-methylthioadenosine/s-adenosylhomocys 0.986 0.756 0.704 1e-80
363808346266 uncharacterized protein LOC100779419 [Gl 0.834 0.680 0.801 4e-80
356508039265 PREDICTED: 5'-methylthioadenosine/S-aden 0.834 0.683 0.806 5e-80
297801960266 ATMTN1 [Arabidopsis lyrata subsp. lyrata 0.834 0.680 0.784 1e-79
>gi|255576741|ref|XP_002529258.1| mta/sah nucleosidase, putative [Ricinus communis] gi|223531294|gb|EEF33136.1| mta/sah nucleosidase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  316 bits (810), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 155/181 (85%), Positives = 171/181 (94%)

Query: 37  VDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIP 96
           VDSVGTISASLVTYASIQAL+PDLIINAGT+GGFKAKGASIGDV+L+SDVAFHDRRIPIP
Sbjct: 86  VDSVGTISASLVTYASIQALQPDLIINAGTSGGFKAKGASIGDVYLVSDVAFHDRRIPIP 145

Query: 97  VFDLYGVGQRQAFSTPNLLRELNLKVCKLSTGDSLDMSSQDETSITANDATIKDMEGAAV 156
           VFDLYGVG RQA STPNLL+ELNLKV KLSTGDSLDMS+QDE SI ANDA +KDMEGAAV
Sbjct: 146 VFDLYGVGLRQACSTPNLLKELNLKVGKLSTGDSLDMSAQDEASIIANDAVVKDMEGAAV 205

Query: 157 AYVADLFKVPALFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVIDFINGKRFSE 216
           A+VADLFKVPA+FVKAVTD+VDGDKPTAEEF+QNL AVTAAL+Q+V+QV+D+INGK   E
Sbjct: 206 AFVADLFKVPAIFVKAVTDIVDGDKPTAEEFLQNLAAVTAALDQAVTQVVDYINGKCVFE 265

Query: 217 L 217
           L
Sbjct: 266 L 266

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224078057|ref|XP_002305481.1| predicted protein [Populus trichocarpa] gi|118481001|gb|ABK92454.1| unknown [Populus trichocarpa] gi|222848445|gb|EEE85992.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224105257|ref|XP_002313743.1| predicted protein [Populus trichocarpa] gi|222850151|gb|EEE87698.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|217073232|gb|ACJ84975.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|357467479|ref|XP_003604024.1| 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [Medicago truncatula] gi|355493072|gb|AES74275.1| 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [Medicago truncatula] gi|388498734|gb|AFK37433.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|449524090|ref|XP_004169056.1| PREDICTED: 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|448872668|gb|AGE46019.1| 5'-methylthioadenosine/s-adenosylhomocysteine nucleosidase 1-like protein [Elaeis guineensis] Back     alignment and taxonomy information
>gi|363808346|ref|NP_001242507.1| uncharacterized protein LOC100779419 [Glycine max] gi|255641117|gb|ACU20837.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356508039|ref|XP_003522770.1| PREDICTED: 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1-like [Glycine max] Back     alignment and taxonomy information
>gi|297801960|ref|XP_002868864.1| ATMTN1 [Arabidopsis lyrata subsp. lyrata] gi|297314700|gb|EFH45123.1| ATMTN1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query217
TAIR|locus:2141806267 MTN1 "methylthioadenosine nucl 0.834 0.677 0.729 5.1e-67
TAIR|locus:2116925254 MTN2 [Arabidopsis thaliana (ta 0.834 0.712 0.651 7.1e-61
UNIPROTKB|Q9KPI8231 mtnN "5'-methylthioadenosine/S 0.723 0.679 0.252 5.7e-08
TIGR_CMR|VC_2379231 VC_2379 "MTA/SAH nucleosidase" 0.723 0.679 0.252 5.7e-08
TIGR_CMR|CPS_4743243 CPS_4743 "MTA/SAH nucleosidase 0.405 0.362 0.287 2.4e-07
TIGR_CMR|SO_1322236 SO_1322 "5-methylthioadenosine 0.654 0.601 0.261 4.5e-07
UNIPROTKB|P0AF12232 mtn "5'-methylthioadenosine/S- 0.751 0.702 0.244 1.2e-05
TIGR_CMR|BA_4602231 BA_4602 "MTA/SAH nucleosidase" 0.668 0.627 0.245 3.9e-05
TAIR|locus:2141806 MTN1 "methylthioadenosine nucleosidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
 Identities = 132/181 (72%), Positives = 155/181 (85%)

Query:    37 VDSVGTISASLVTYASIQALKPDLIINXXXXXXXXXXXXSIGDVFLISDVAFHDRRIPIP 96
             +DSVGT+ ASL+T+ASIQALKPD+IIN            +IGDVFL+SDV FHDRRIPIP
Sbjct:    87 IDSVGTVPASLITFASIQALKPDIIINAGTCGGFKVKGANIGDVFLVSDVVFHDRRIPIP 146

Query:    97 VFDLYGVGQRQAFSTPNLLRELNLKVCKLSTGDSLDMSSQDETSITANDATIKDMEGAAV 156
             +FDLYGVG RQAFSTPNLL+ELNLK+ +LSTGDSLDMS+QDET I ANDAT+KDMEGAAV
Sbjct:   147 MFDLYGVGLRQAFSTPNLLKELNLKIGRLSTGDSLDMSTQDETLIIANDATLKDMEGAAV 206

Query:   157 AYVADLFKVPALFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVIDFINGKRFSE 216
             AYVADL K+P +F+KAVTDLVDGDKPTAEEF+QNL  VTAALE + ++VI+FING+  S+
Sbjct:   207 AYVADLLKIPVVFLKAVTDLVDGDKPTAEEFLQNLTVVTAALEGTATKVINFINGRNLSD 266

Query:   217 L 217
             L
Sbjct:   267 L 267
GO:0003824 "catalytic activity" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0009116 "nucleoside metabolic process" evidence=ISS
GO:0008930 "methylthioadenosine nucleosidase activity" evidence=IDA;NAS
GO:0005886 "plasma membrane" evidence=IDA
GO:0019509 "L-methionine salvage from methylthioadenosine" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0000003 "reproduction" evidence=IGI
GO:0001944 "vasculature development" evidence=IGI
GO:0048573 "photoperiodism, flowering" evidence=RCA
TAIR|locus:2116925 MTN2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KPI8 mtnN "5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2379 VC_2379 "MTA/SAH nucleosidase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_4743 CPS_4743 "MTA/SAH nucleosidase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|SO_1322 SO_1322 "5-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|P0AF12 mtn "5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase monomer" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4602 BA_4602 "MTA/SAH nucleosidase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9T0I8MTN1_ARATH3, ., 2, ., 2, ., 90.78450.83410.6779yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.2.90.946
3rd Layer3.2.20.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_IV1398
SubName- Full=Putative uncharacterized protein; (263 aa)
(Populus trichocarpa)
Predicted Functional Partners:
ACS3
1-aminocyclopropane-1-carboxylate (EC-4.4.1.14) (467 aa)
     •• 0.901
ACS4
1-aminocyclopropane-1-carboxylate (EC-4.4.1.14) (468 aa)
     •• 0.901
ACS8
1-aminocyclopropane-1-carboxylate (EC-4.4.1.14) (449 aa)
     •• 0.901
ACS7
1-aminocyclopropane-1-carboxylate (480 aa)
     •• 0.900
ACS1
SubName- Full=Putative uncharacterized protein; (481 aa)
     •• 0.900
ACS6
1-aminocyclopropane-1-carboxylate (EC-4.4.1.14) (440 aa)
     •• 0.900
ACS2
1-aminocyclopropane-1-carboxylate (486 aa)
     •• 0.900
ACS5
1-aminocyclopropane-1-carboxylate (EC-4.4.1.14) (446 aa)
     •• 0.900
grail3.0009003101
spermidine synthase (335 aa)
     •• 0.900
fgenesh4_pg.C_LG_XII000148
spermidine synthase (EC-2.5.1.16) (347 aa)
     •• 0.900

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query217
PLN02584249 PLN02584, PLN02584, 5'-methylthioadenosine nucleos 1e-119
COG0775234 COG0775, Pfs, Nucleoside phosphorylase [Nucleotide 2e-16
pfam01048232 pfam01048, PNP_UDP_1, Phosphorylase superfamily 3e-14
TIGR01704228 TIGR01704, MTA/SAH-Nsdase, 5'-methylthioadenosine/ 5e-12
PRK05584230 PRK05584, PRK05584, 5'-methylthioadenosine/S-adeno 1e-11
TIGR03664222 TIGR03664, fut_nucase, futalosine nucleosidase 9e-09
PRK05634185 PRK05634, PRK05634, nucleosidase; Provisional 1e-08
PRK14697233 PRK14697, PRK14697, bifunctional 5'-methylthioaden 9e-06
PRK06698 459 PRK06698, PRK06698, bifunctional 5'-methylthioaden 2e-05
PRK07164218 PRK07164, PRK07164, 5'-methylthioadenosine/S-adeno 0.001
PRK06714236 PRK06714, PRK06714, S-adenosylhomocysteine nucleos 0.003
>gnl|CDD|178196 PLN02584, PLN02584, 5'-methylthioadenosine nucleosidase Back     alignment and domain information 
 Score =  339 bits (872), Expect = e-119
 Identities = 139/181 (76%), Positives = 157/181 (86%)

Query: 37  VDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIP 96
           VDSVGT+ ASLVTYA+IQALKPDLIINAGTAGGFKAKGA+IGDVFL + VA HDRRIPIP
Sbjct: 69  VDSVGTVPASLVTYAAIQALKPDLIINAGTAGGFKAKGAAIGDVFLATAVANHDRRIPIP 128

Query: 97  VFDLYGVGQRQAFSTPNLLRELNLKVCKLSTGDSLDMSSQDETSITANDATIKDMEGAAV 156
           VFD YGVG R AF TPNL++ L LK   LSTG+SLDM+ QDE SI ANDAT+KDMEGAAV
Sbjct: 129 VFDKYGVGTRDAFPTPNLIKALGLKEGVLSTGNSLDMTEQDEESIKANDATVKDMEGAAV 188

Query: 157 AYVADLFKVPALFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVIDFINGKRFSE 216
           AYVADL KVPA+FVKAVTD+VDGDKPTAEEF++NL A  AAL+ +V +V+DFI+GK  SE
Sbjct: 189 AYVADLLKVPAIFVKAVTDIVDGDKPTAEEFLENLSAAAAALQGAVPKVLDFISGKCLSE 248

Query: 217 L 217
           L
Sbjct: 249 L 249

Length = 249
>gnl|CDD|223846 COG0775, Pfs, Nucleoside phosphorylase [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|216264 pfam01048, PNP_UDP_1, Phosphorylase superfamily Back     alignment and domain information
>gnl|CDD|130765 TIGR01704, MTA/SAH-Nsdase, 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase Back     alignment and domain information
>gnl|CDD|180148 PRK05584, PRK05584, 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated Back     alignment and domain information
>gnl|CDD|234302 TIGR03664, fut_nucase, futalosine nucleosidase Back     alignment and domain information
>gnl|CDD|235538 PRK05634, PRK05634, nucleosidase; Provisional Back     alignment and domain information
>gnl|CDD|184794 PRK14697, PRK14697, bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Provisional Back     alignment and domain information
>gnl|CDD|136007 PRK06698, PRK06698, bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated Back     alignment and domain information
>gnl|CDD|235950 PRK07164, PRK07164, 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Provisional Back     alignment and domain information
>gnl|CDD|168652 PRK06714, PRK06714, S-adenosylhomocysteine nucleosidase; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 217
PLN02584249 5'-methylthioadenosine nucleosidase 100.0
PRK14697233 bifunctional 5'-methylthioadenosine/S-adenosylhomo 100.0
TIGR01704228 MTA/SAH-Nsdase 5'-methylthioadenosine/S-adenosylho 100.0
PRK06714236 S-adenosylhomocysteine nucleosidase; Validated 100.0
PRK07164218 5'-methylthioadenosine/S-adenosylhomocysteine nucl 100.0
PRK06698 459 bifunctional 5'-methylthioadenosine/S-adenosylhomo 100.0
PRK05584230 5'-methylthioadenosine/S-adenosylhomocysteine nucl 100.0
COG0775234 Pfs Nucleoside phosphorylase [Nucleotide transport 100.0
TIGR03664222 fut_nucase futalosine nucleosidase. This enzyme ca 100.0
TIGR01705212 MTA/SAH-nuc-hyp 5'-methylthioadenosine/S-adenosylh 100.0
PRK13374233 purine nucleoside phosphorylase; Provisional 100.0
PRK06026212 5'-methylthioadenosine/S-adenosylhomocysteine nucl 100.0
PRK08236212 hypothetical protein; Provisional 100.0
PRK05819235 deoD purine nucleoside phosphorylase; Reviewed 100.0
TIGR00107232 deoD purine-nucleoside phosphorylase, family 1 (de 100.0
PF01048234 PNP_UDP_1: Phosphorylase superfamily; InterPro: IP 99.98
PRK05634185 nucleosidase; Provisional 99.97
TIGR01718245 Uridine-psphlse uridine phosphorylase. Sequences f 99.97
PRK11178251 uridine phosphorylase; Provisional 99.97
PRK07115258 AMP nucleosidase; Provisional 99.97
TIGR01697248 PNPH-PUNA-XAPA inosine guanosine and xanthosine ph 99.97
PRK08666261 5'-methylthioadenosine phosphorylase; Validated 99.96
TIGR01700249 PNPH purine nucleoside phosphorylase I, inosine an 99.96
TIGR01721266 AMN-like AMP nucleosidase, putative. The sequences 99.96
TIGR01694241 MTAP 5'-deoxy-5'-methylthioadenosine phosphorylase 99.96
PRK08202272 purine nucleoside phosphorylase; Provisional 99.96
PRK08292489 AMP nucleosidase; Provisional 99.96
TIGR01717477 AMP-nucleosdse AMP nucleosidase. This model repres 99.95
TIGR03468212 HpnG hopanoid-associated phosphorylase. The sequen 99.95
TIGR01719287 euk_UDPppase uridine phosphorylase. This model rep 99.95
COG0813236 DeoD Purine-nucleoside phosphorylase [Nucleotide t 99.94
PRK07077238 hypothetical protein; Provisional 99.94
COG2820248 Udp Uridine phosphorylase [Nucleotide transport an 99.92
TIGR01699248 XAPA xanthosine phosphorylase. (TIGR01698, TIGR017 99.92
PRK09136245 5'-methylthioadenosine phosphorylase; Validated 99.91
PRK08931289 5'-methylthioadenosine phosphorylase; Provisional 99.63
TIGR01698237 PUNP purine nucleotide phosphorylase. methylthioad 99.63
PRK08564267 5'-methylthioadenosine phosphorylase II; Reviewed 99.62
PRK07432290 5'-methylthioadenosine phosphorylase; Provisional 99.6
PRK07823264 5'-methylthioadenosine phosphorylase; Validated 99.53
COG0005262 Pnp Purine nucleoside phosphorylase [Nucleotide tr 99.39
KOG3985283 consensus Methylthioadenosine phosphorylase MTAP [ 99.05
KOG3984286 consensus Purine nucleoside phosphorylase [Nucleot 99.03
KOG3728308 consensus Uridine phosphorylase [Nucleotide transp 98.6
PF06516314 NUP: Purine nucleoside permease (NUP); InterPro: I 98.42
COG5042349 NUP Purine nucleoside permease [Nucleotide transpo 86.85
>PLN02584 5'-methylthioadenosine nucleosidase Back     alignment and domain information 
Probab=100.00  E-value=1.6e-42  Score=290.31  Aligned_cols=203  Identities=69%  Similarity=0.975  Sum_probs=184.0

Q ss_pred             ecCcEEEEEEEcceeEEEeeeeeEeeC------CCCcCHHHHHHHHHHHHHhcCCCEEEEEeeecccCCCCCCcccEEEE
Q 027878           10 VVGHTCTQQEYEIHDLFFANLNLILSE------VDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLI   83 (217)
Q Consensus        10 ~~g~~~~~G~~~~~~v~~~~v~~~~~G------~~gvG~~~Aa~~~~~li~~~~~~~ii~~G~aG~l~~~~~~~GDvvi~   83 (217)
                      ..++.+|+|+|+|++|.+     +.+|      +||||++|||+++++++.+++|+.||++|+|||++++++++||+|++
T Consensus        41 ~~~~~~~~G~~~g~~V~v-----~~sG~~~~~~i~~IGkvnAA~~~~~li~~~~~~~II~~G~aG~l~~~~l~vGDvVia  115 (249)
T PLN02584         41 GVPWVRYSGTHKGLRVHV-----VCPGKDKALGVDSVGTVPASLVTYAAIQALKPDLIINAGTAGGFKAKGAAIGDVFLA  115 (249)
T ss_pred             cCCeeEEEEEECCEEEEE-----EecCCccccccCccCHHHHHHHHHHHHHhcCCCEEEEEecccCcCcCCCCcCCEEEE
Confidence            678899999999999999     8898      88899999999999999999999999999999998337999999999


Q ss_pred             cceeeccCCCCCCCcccCCCCccCCCCChhHhhcCcceEEEEeecCceecChHhHHHHHhCCCcEEcccchHHHHHHHhC
Q 027878           84 SDVAFHDRRIPIPVFDLYGVGQRQAFSTPNLLRELNLKVCKLSTGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLF  163 (217)
Q Consensus        84 ~~~~~~d~~~~~p~f~~y~~g~~p~~~~~~l~~~~~~~~G~i~Sgd~~~~~~~~~~~l~~~~a~~vdME~aava~~a~~~  163 (217)
                      ++++++|.+...|.|+.|.+++.|.++++.+.....++.|.++|+|.|+.+.+..+.+++++++++|||+||+|++|+.+
T Consensus       116 ~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~G~i~SgD~F~~~~~~~~~~~~~~a~~vDME~aAia~va~~~  195 (249)
T PLN02584        116 TAVANHDRRIPIPVFDKYGVGTRDAFPTPNLIKALGLKEGVLSTGNSLDMTEQDEESIKANDATVKDMEGAAVAYVADLL  195 (249)
T ss_pred             CeeEecccCCCcccccccccCccccCCCHHHHhhCCCeEEEEEEeCEEeCCHHHHHHHHHcCCcEEechHHHHHHHHHHh
Confidence            99999998655556666777777777777777777889999999999998877666677789999999999999999999


Q ss_pred             CCCEEEEEeeecCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCC
Q 027878          164 KVPALFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVIDFINGKRFSEL  217 (217)
Q Consensus       164 ~ip~~~ir~ISD~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~l~~~~~~~~~~~  217 (217)
                      ++||++||+|||.++++..++++|.++...+++.+.+.+.++++.+.+|-+|+|
T Consensus       196 gvp~~~IR~ISD~~~~~~~~~~ef~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~  249 (249)
T PLN02584        196 KVPAIFVKAVTDIVDGDKPTAEEFLENLSAAAAALQGAVPKVLDFISGKCLSEL  249 (249)
T ss_pred             CCCEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccC
Confidence            999999999999998766578999999999999999999999999999999987

>PRK14697 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Provisional Back     alignment and domain information
>TIGR01704 MTA/SAH-Nsdase 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase Back     alignment and domain information
>PRK06714 S-adenosylhomocysteine nucleosidase; Validated Back     alignment and domain information
>PRK07164 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Provisional Back     alignment and domain information
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated Back     alignment and domain information
>PRK05584 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated Back     alignment and domain information
>COG0775 Pfs Nucleoside phosphorylase [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR03664 fut_nucase futalosine nucleosidase Back     alignment and domain information
>TIGR01705 MTA/SAH-nuc-hyp 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, putative Back     alignment and domain information
>PRK13374 purine nucleoside phosphorylase; Provisional Back     alignment and domain information
>PRK06026 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated Back     alignment and domain information
>PRK08236 hypothetical protein; Provisional Back     alignment and domain information
>PRK05819 deoD purine nucleoside phosphorylase; Reviewed Back     alignment and domain information
>TIGR00107 deoD purine-nucleoside phosphorylase, family 1 (deoD) Back     alignment and domain information
>PF01048 PNP_UDP_1: Phosphorylase superfamily; InterPro: IPR000845 Phosphorylases in this entry include: Purine nucleoside phosphorylase (2 Back     alignment and domain information
>PRK05634 nucleosidase; Provisional Back     alignment and domain information
>TIGR01718 Uridine-psphlse uridine phosphorylase Back     alignment and domain information
>PRK11178 uridine phosphorylase; Provisional Back     alignment and domain information
>PRK07115 AMP nucleosidase; Provisional Back     alignment and domain information
>TIGR01697 PNPH-PUNA-XAPA inosine guanosine and xanthosine phosphorylase family Back     alignment and domain information
>PRK08666 5'-methylthioadenosine phosphorylase; Validated Back     alignment and domain information
>TIGR01700 PNPH purine nucleoside phosphorylase I, inosine and guanosine-specific Back     alignment and domain information
>TIGR01721 AMN-like AMP nucleosidase, putative Back     alignment and domain information
>TIGR01694 MTAP 5'-deoxy-5'-methylthioadenosine phosphorylase Back     alignment and domain information
>PRK08202 purine nucleoside phosphorylase; Provisional Back     alignment and domain information
>PRK08292 AMP nucleosidase; Provisional Back     alignment and domain information
>TIGR01717 AMP-nucleosdse AMP nucleosidase Back     alignment and domain information
>TIGR03468 HpnG hopanoid-associated phosphorylase Back     alignment and domain information
>TIGR01719 euk_UDPppase uridine phosphorylase Back     alignment and domain information
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK07077 hypothetical protein; Provisional Back     alignment and domain information
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR01699 XAPA xanthosine phosphorylase Back     alignment and domain information
>PRK09136 5'-methylthioadenosine phosphorylase; Validated Back     alignment and domain information
>PRK08931 5'-methylthioadenosine phosphorylase; Provisional Back     alignment and domain information
>TIGR01698 PUNP purine nucleotide phosphorylase Back     alignment and domain information
>PRK08564 5'-methylthioadenosine phosphorylase II; Reviewed Back     alignment and domain information
>PRK07432 5'-methylthioadenosine phosphorylase; Provisional Back     alignment and domain information
>PRK07823 5'-methylthioadenosine phosphorylase; Validated Back     alignment and domain information
>COG0005 Pnp Purine nucleoside phosphorylase [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG3985 consensus Methylthioadenosine phosphorylase MTAP [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG3984 consensus Purine nucleoside phosphorylase [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG3728 consensus Uridine phosphorylase [Nucleotide transport and metabolism] Back     alignment and domain information
>PF06516 NUP: Purine nucleoside permease (NUP); InterPro: IPR009486 This family consists of several purine nucleoside permease from both bacteria and fungi [] Back     alignment and domain information
>COG5042 NUP Purine nucleoside permease [Nucleotide transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query217
2h8g_A267 5'-Methylthioadenosine Nucleosidase From Arabidopsi 2e-74
3bsf_A254 Crystal Structure Of The MtaSAH NUCLEOSIDASE Length 2e-67
4gmh_A230 Crystal Structure Of Staphylococcus Aureus 5'-Methy 6e-07
3bl6_A230 Crystal Structure Of Staphylococcus Aureus 5'- Meth 6e-07
3dp9_A231 Crystal Structure Of Vibrio Cholerae 5'-methylthioa 2e-06
4g89_A237 Crystal Structure Of K. Pneumoniae MtaADOHCY NUCLEO 3e-04
>pdb|2H8G|A Chain A, 5'-Methylthioadenosine Nucleosidase From Arabidopsis Thaliana Length = 267 Back     alignment and structure 
Iteration: 1

 Score =  275 bits (703), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 132/181 (72%), Positives = 155/181 (85%)
Query: 37  VDSVGTISASLVTYASIQALKPDLIINXXXXXXXXXXXXSIGDVFLISDVAFHDRRIPIP 96
           +DSVGT+ ASL+T+ASIQALKPD+IIN            +IGDVFL+SDV FHDRRIPIP
Sbjct: 87  IDSVGTVPASLITFASIQALKPDIIINAGTCGGFKVKGANIGDVFLVSDVVFHDRRIPIP 146
Query: 97  VFDLYGVGQRQAFSTPNLLRELNLKVCKLSTGDSLDMSSQDETSITANDATIKDMEGAAV 156
           +FDLYGVG RQAFSTPNLL+ELNLK+ +LSTGDSLDMS+QDET I ANDAT+KDMEGAAV
Sbjct: 147 MFDLYGVGLRQAFSTPNLLKELNLKIGRLSTGDSLDMSTQDETLIIANDATLKDMEGAAV 206
Query: 157 AYVADLFKVPALFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVIDFINGKRFSE 216
           AYVADL K+P +F+KAVTDLVDGDKPTAEEF+QNL  VTAALE + ++VI+FING+  S+
Sbjct: 207 AYVADLLKIPVVFLKAVTDLVDGDKPTAEEFLQNLTVVTAALEGTATKVINFINGRNLSD 266
Query: 217 L 217
           L
Sbjct: 267 L 267
>pdb|3BSF|A Chain A, Crystal Structure Of The MtaSAH NUCLEOSIDASE Length = 254 Back     alignment and structure
>pdb|4GMH|A Chain A, Crystal Structure Of Staphylococcus Aureus 5'-MethylthioadenosineS- Adenosylhomocysteine Nucleosidase Length = 230 Back     alignment and structure
>pdb|3BL6|A Chain A, Crystal Structure Of Staphylococcus Aureus 5'- MethylthioadenosineS-Adenosylhomocysteine Nucleosidase In Complex With Formycin A Length = 230 Back     alignment and structure
>pdb|3DP9|A Chain A, Crystal Structure Of Vibrio Cholerae 5'-methylthioadenosine/s-adenosyl Homocysteine Nucleosidase (mtan) Complexed With Butylthio-dadme- Immucillin A Length = 231 Back     alignment and structure
>pdb|4G89|A Chain A, Crystal Structure Of K. Pneumoniae MtaADOHCY NUCLEOSIDASE IN COMPLEX With Fragmented S-Adenosyl-L-Homocysteine Length = 237 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query217
2h8g_A267 5'-methylthioadenosine nucleosidase; protein-adeni 7e-55
3bsf_A254 AT4G34840, nucleosidase; alpha-beta, hydrolase; HE 1e-54
3dp9_A231 MTA/SAH nucleosidase; vibrio cholerae 5'-methylthi 7e-33
3bl6_A230 5'-methylthioadenosine nucleosidase/S- adenosylhom 6e-32
3o4v_A234 MTA/SAH nucleosidase; mixed alpha/beta dimer, hydr 7e-31
3eei_A233 5-methylthioadenosine nucleosidase/S- adenosylhomo 1e-30
3nm6_B230 MTA/SAH nucleosidase; hydrolase; HET: ADE; 1.60A { 3e-30
1zos_A230 5'-methylthioadenosine / S-adenosylhomocysteine nu 3e-28
1t8s_A484 AMP nucleosidase; alpha-beta-alpha sandwich, alpha 3e-10
3u40_A242 Pnpase, purine nucleoside phosphorylase; structura 7e-09
1z34_A235 Purine nucleoside phosphorylase; alpha-beta-alpha 1e-06
1vhw_A253 Purine nucleoside phosphorylase; structural genomi 1e-05
3uaw_A235 PNP, purine nucleoside phosphorylase DEOD-type; ne 2e-05
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 6e-05
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 3e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
1ybf_A268 AMP nucleosidase; structural genomics, protein str 8e-04
>2h8g_A 5'-methylthioadenosine nucleosidase; protein-adenine complex, hydrolase; HET: ADE; 1.50A {Arabidopsis thaliana} PDB: 2qsu_A 2qtg_A* 2qtt_A* 3lgs_A* Length = 267 Back     alignment and structure
 Score =  175 bits (444), Expect = 7e-55
 Identities = 142/181 (78%), Positives = 165/181 (91%)

Query: 37  VDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIP 96
           +DSVGT+ ASL+T+ASIQALKPD+IINAGT GGFK KGA+IGDVFL+SDV FHDRRIPIP
Sbjct: 87  IDSVGTVPASLITFASIQALKPDIIINAGTCGGFKVKGANIGDVFLVSDVVFHDRRIPIP 146

Query: 97  VFDLYGVGQRQAFSTPNLLRELNLKVCKLSTGDSLDMSSQDETSITANDATIKDMEGAAV 156
           +FDLYGVG RQAFSTPNLL+ELNLK+ +LSTGDSLDMS+QDET I ANDAT+KDMEGAAV
Sbjct: 147 MFDLYGVGLRQAFSTPNLLKELNLKIGRLSTGDSLDMSTQDETLIIANDATLKDMEGAAV 206

Query: 157 AYVADLFKVPALFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVIDFINGKRFSE 216
           AYVADL K+P +F+KAVTDLVDGDKPTAEEF+QNL  VTAALE + ++VI+FING+  S+
Sbjct: 207 AYVADLLKIPVVFLKAVTDLVDGDKPTAEEFLQNLTVVTAALEGTATKVINFINGRNLSD 266

Query: 217 L 217
           L
Sbjct: 267 L 267
>3bsf_A AT4G34840, nucleosidase; alpha-beta, hydrolase; HET: ADE; 2.90A {Arabidopsis thaliana} Length = 254 Back     alignment and structure
>3dp9_A MTA/SAH nucleosidase; vibrio cholerae 5'-methylthioadenosine/S-adenosyl homocystei nucleosidase, butylthio dadme immucillin A, MTAN, hydrolase; HET: BIG; 2.30A {Vibrio cholerae} Length = 231 Back     alignment and structure
>3bl6_A 5'-methylthioadenosine nucleosidase/S- adenosylhomocysteine nucleosidase; MTAN, alpha and beta proteins, hydrolase; HET: FMC; 1.70A {Staphylococcus aureus} Length = 230 Back     alignment and structure
>3o4v_A MTA/SAH nucleosidase; mixed alpha/beta dimer, hydrolase; HET: 4CT; 1.75A {Escherichia coli} PDB: 1jys_A* 1nc1_A* 1nc3_A* 1y6q_A* 1y6r_A* 1z5p_A* 3df9_A* 1z5n_A* 1z5o_A* Length = 234 Back     alignment and structure
>3eei_A 5-methylthioadenosine nucleosidase/S- adenosylhomocysteine nucleosidase; MTAN; HET: MTM; 1.78A {Neisseria meningitidis serogroup B} Length = 233 Back     alignment and structure
>3nm6_B MTA/SAH nucleosidase; hydrolase; HET: ADE; 1.60A {Helicobacter pylori} PDB: 3nm5_A* 3nm4_A* Length = 230 Back     alignment and structure
>1zos_A 5'-methylthioadenosine / S-adenosylhomocysteine nucleosidase; transition state, inhibitor, hydrolase; HET: MTM; 1.60A {Streptococcus pneumoniae R6} PDB: 3mms_A* Length = 230 Back     alignment and structure
>1t8s_A AMP nucleosidase; alpha-beta-alpha sandwich, alpha-beta fold, hydrolase; HET: FMP; 2.60A {Escherichia coli} SCOP: c.56.2.1 PDB: 1t8r_A* 1t8w_A 1t8y_A 2guw_A Length = 484 Back     alignment and structure
>3u40_A Pnpase, purine nucleoside phosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: ADN; 2.05A {Entamoeba histolytica} PDB: 3tl6_A* Length = 242 Back     alignment and structure
>1z34_A Purine nucleoside phosphorylase; alpha-beta-alpha sandwich, transferase; HET: 2FD; 2.40A {Trichomonas vaginalis} PDB: 1z33_A* 1z35_A* 1z36_A* 1z37_A* 1z38_A* 1z39_A* 2i4t_A* 2isc_A* Length = 235 Back     alignment and structure
>1vhw_A Purine nucleoside phosphorylase; structural genomics, transferase; HET: ADN; 1.54A {Vibrio cholerae} SCOP: c.56.2.1 PDB: 1vhj_A* 3of3_A* 3occ_A* 1pw7_A* 1pr1_A* 1pr2_A* 1pr4_A* 1pr5_A* 1pr0_A* 1pr6_A* 3onv_A 1pk7_A* 1k9s_A* 1pke_A* 1pk9_A 3ooe_A 3ooh_A 1ecp_A 1a69_A 1oty_A* ... Length = 253 Back     alignment and structure
>3uaw_A PNP, purine nucleoside phosphorylase DEOD-type; necleoside phosphorylase I (NP-I) family, transferase; HET: ADN GOL; 1.20A {Bacillus cereus} PDB: 2ac7_A 3uav_A* 3uax_A* 1xe3_A 3uay_A* 3uaz_A* Length = 235 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1ybf_A AMP nucleosidase; structural genomics, protein structure initiative, PSI, NEW research center for structural genomics, nysgxrc; 2.90A {Bacteroides thetaiotaomicron} SCOP: c.56.2.1 Length = 268 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query217
3bsf_A254 AT4G34840, nucleosidase; alpha-beta, hydrolase; HE 100.0
2h8g_A267 5'-methylthioadenosine nucleosidase; protein-adeni 100.0
4g41_A236 MTA/SAH nucleosidase; mixed alpha/beta, hydrolase, 100.0
3o4v_A234 MTA/SAH nucleosidase; mixed alpha/beta dimer, hydr 100.0
3dp9_A231 MTA/SAH nucleosidase; vibrio cholerae 5'-methylthi 100.0
3eei_A233 5-methylthioadenosine nucleosidase/S- adenosylhomo 100.0
3nm6_B230 MTA/SAH nucleosidase; hydrolase; HET: ADE; 1.60A { 100.0
1zos_A230 5'-methylthioadenosine / S-adenosylhomocysteine nu 100.0
3bl6_A230 5'-methylthioadenosine nucleosidase/S- adenosylhom 100.0
1z34_A235 Purine nucleoside phosphorylase; alpha-beta-alpha 100.0
1odk_A235 Purine nucleoside phosphorylase; alpha-beta protei 100.0
1je0_A236 MTAP;, 5'-methylthioadenosine phosphorylase; alpha 100.0
1vhw_A253 Purine nucleoside phosphorylase; structural genomi 99.98
3uaw_A235 PNP, purine nucleoside phosphorylase DEOD-type; ne 99.98
3u40_A242 Pnpase, purine nucleoside phosphorylase; structura 99.97
2b94_A267 Purine nucleoside phosphorylase; SGPP, structural 99.97
3phc_A275 Purine nucleoside phosphorylase; PNP,immucillin, t 99.97
3mb8_A279 Purine nucleoside phosphorylase; PNP, immucillin H 99.97
1cb0_A283 Protein (5'-deoxy-5'-methylthioadenosine phosphor; 99.97
3ddo_A253 Urdpase, upase, uridine phosphorylase; transferase 99.97
1t8s_A484 AMP nucleosidase; alpha-beta-alpha sandwich, alpha 99.97
1wta_A275 5'-methylthioadenosine phosphorylase; A/B structur 99.96
2a8y_A270 5'-methylthioadenosine phosphorylase (MTAP); alpha 99.96
1ybf_A268 AMP nucleosidase; structural genomics, protein str 99.96
3p0f_A297 Uridine phosphorylase 2; transferase; HET: BAU; 1. 99.96
3qpb_A282 Uridine phosphorylase; hexamer, NP-I superfamily, 99.96
3euf_A328 Uridine phosphorylase 1; nucleoside phosphorylase, 99.96
3ozb_A259 Methylthioadenosine phosphorylase; 5'-methylthioin 99.95
3odg_A287 Xanthosine phosphorylase; structural genomics, PSI 99.95
3bje_A349 Nucleoside phosphorylase, putative; uridine phosph 99.95
1g2o_A268 Purine nucleoside phosphorylase; trimer, transitio 99.95
2p4s_A373 Purine nucleoside phosphorylase; transferase; HET: 99.94
1vmk_A277 Purine nucleoside phosphorylase; TM1596, structura 99.94
1tcv_A287 Purine-nucleoside phosphorylase; transferase; HET: 99.94
3fuc_A284 Purine nucleoside phosphorylase; recombinant, glyc 99.93
3la8_A303 SMU.1229, putative purine nucleoside phosphorylase 99.93
3khs_A285 Purine nucleoside phosphorylase; alpha-beta struct 99.93
3phb_E324 Purine nucleoside phosphorylase; PNP,immucillin, t 99.92
1qe5_A266 Pentosyltransferase; enzyme, purine nucleoside pho 99.92
>3bsf_A AT4G34840, nucleosidase; alpha-beta, hydrolase; HET: ADE; 2.90A {Arabidopsis thaliana} Back     alignment and structure
Probab=100.00  E-value=9.9e-41  Score=279.52  Aligned_cols=201  Identities=64%  Similarity=1.009  Sum_probs=180.6

Q ss_pred             cCcEEEEEEEcceeEEEeeeeeEeeCC------CCcCHHHHHHHHHHHHHhcCCCEEEEEeeeccc-CCCCCCcccEEEE
Q 027878           11 VGHTCTQQEYEIHDLFFANLNLILSEV------DSVGTISASLVTYASIQALKPDLIINAGTAGGF-KAKGASIGDVFLI   83 (217)
Q Consensus        11 ~g~~~~~G~~~~~~v~~~~v~~~~~G~------~gvG~~~Aa~~~~~li~~~~~~~ii~~G~aG~l-~~~~~~~GDvvi~   83 (217)
                      ++++||.|++++++|.+     +.+|.      ..||+++|++++++|+.+|+|+.+|++|+|||+ + +++++|||||+
T Consensus        47 ~~~~~~~G~~~g~~V~v-----~~~G~~h~~~~~~iG~~~aa~~~~~ll~~~~~~~iI~~G~aGgl~~-~~~~~GDvvi~  120 (254)
T 3bsf_A           47 VTWIMFKGMYKDLNINI-----VCPGKDSTLGVESVGTVPASLVTYASILAIQPDLIINAGTAGGFKA-KGACISDVYVV  120 (254)
T ss_dssp             SCCEEEEEEETTEEEEE-----EECCBCTTTCSBCCSHHHHHHHHHHHHHSSCCSEEEEEEEEEECGG-GTCCTTCEEEE
T ss_pred             CCeEEEEEEECCEEEEE-----EECCCccccccCccCHHHHHHHHHHHHHHcCCCEEEEEEeecCcCC-CCCccCCEEEE
Confidence            68899999999999988     66661      117999999999999999999999999999999 7 79999999999


Q ss_pred             cceeeccCCCCCCCcccCCCCccCCCCChhHhhcCcceEEEEeecCceecChHhHHHHHhCCCcEEcccchHHHHHHHhC
Q 027878           84 SDVAFHDRRIPIPVFDLYGVGQRQAFSTPNLLRELNLKVCKLSTGDSLDMSSQDETSITANDATIKDMEGAAVAYVADLF  163 (217)
Q Consensus        84 ~~~~~~d~~~~~p~f~~y~~g~~p~~~~~~l~~~~~~~~G~i~Sgd~~~~~~~~~~~l~~~~a~~vdME~aava~~a~~~  163 (217)
                      ++++++|.+.+.+.|+.|..++.|.|+++.|.++++++.|+++|+|+|+.+++.+++++++++++||||+++++++|+++
T Consensus       121 ~~~~~~d~~~~~~~~~~~~~~~~p~~~~~~L~~~~~~~~G~i~sgd~f~~~~~~~~~~~~~g~~~veME~aa~a~va~~~  200 (254)
T 3bsf_A          121 STVAFHDRRIPVPVLDIYGVGMRNTFPTPNLIKELNLKVGRLSTGDSMDMSPHDEESITANDATVKDMEGAAVAYVADIF  200 (254)
T ss_dssp             EEEEESSCCCCSTTHHHHHHCCEECCCCHHHHHHTTCEEEEEEECSCSSCCHHHHHHHHHTTCSEEESSHHHHHHHHHHT
T ss_pred             eeeeeccCCCCccccCcCCCCcCCCCCCHHHHhCCCeEEeeEEECccccCCHHHHHHHHHcCCcEEECcHHHHHHHHHHc
Confidence            99999998755445644666778888888888889999999999999998888888888889999999999999999999


Q ss_pred             CCCEEEEEeeecCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCC
Q 027878          164 KVPALFVKAVTDLVDGDKPTAEEFMQNLVAVTAALEQSVSQVIDFINGKRFSEL  217 (217)
Q Consensus       164 ~ip~~~ir~ISD~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~l~~~~~~~~~~~  217 (217)
                      ++||++||+|||++++++++.++|.++++.+++++.+.+.++|+.+.+|.+|+|
T Consensus       201 ~ip~~~Ir~ISD~a~~~~~s~~~~~~~~~~a~~~~~~~l~~~l~~l~~~~~~~~  254 (254)
T 3bsf_A          201 KVPTILIKGVTDIVDGNRPTSEEFLENLAAVTAKLDESLTKVIDFISGKCLSDL  254 (254)
T ss_dssp             TCCEEEEEEEEEETTTTCCSTTTTTSHHHHHHHHHHHHHHHHHHHHTTCBTTTC
T ss_pred             CCCEEEEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccC
Confidence            999999999999999876445889999999999999999999999999999997
>2h8g_A 5'-methylthioadenosine nucleosidase; protein-adenine complex, hydrolase; HET: ADE; 1.50A {Arabidopsis thaliana} PDB: 2qsu_A 2qtg_A* 2qtt_A* 3lgs_A* Back     alignment and structure
>4g41_A MTA/SAH nucleosidase; mixed alpha/beta, hydrolase, S-adenosylhomocysteine, cleavag; HET: MTA; 1.45A {Streptococcus pyogenes} Back     alignment and structure
>3o4v_A MTA/SAH nucleosidase; mixed alpha/beta dimer, hydrolase; HET: 4CT; 1.75A {Escherichia coli} SCOP: c.56.2.1 PDB: 1jys_A* 1nc1_A* 1nc3_A* 1y6q_A* 1y6r_A* 1z5p_A* 3df9_A* 1z5n_A* 1z5o_A* 4g89_A* Back     alignment and structure
>3dp9_A MTA/SAH nucleosidase; vibrio cholerae 5'-methylthioadenosine/S-adenosyl homocystei nucleosidase, butylthio dadme immucillin A, MTAN, hydrolase; HET: BIG; 2.30A {Vibrio cholerae} SCOP: c.56.2.1 Back     alignment and structure
>3eei_A 5-methylthioadenosine nucleosidase/S- adenosylhomocysteine nucleosidase; MTAN; HET: MTM; 1.78A {Neisseria meningitidis serogroup B} SCOP: c.56.2.1 Back     alignment and structure
>3nm6_B MTA/SAH nucleosidase; hydrolase; HET: ADE; 1.60A {Helicobacter pylori} SCOP: c.56.2.0 PDB: 3nm5_A* 3nm4_A* 4ffs_A* Back     alignment and structure
>1zos_A 5'-methylthioadenosine / S-adenosylhomocysteine nucleosidase; transition state, inhibitor, hydrolase; HET: MTM; 1.60A {Streptococcus pneumoniae R6} PDB: 3mms_A* Back     alignment and structure
>3bl6_A 5'-methylthioadenosine nucleosidase/S- adenosylhomocysteine nucleosidase; MTAN, alpha and beta proteins, hydrolase; HET: FMC; 1.70A {Staphylococcus aureus} Back     alignment and structure
>1z34_A Purine nucleoside phosphorylase; alpha-beta-alpha sandwich, transferase; HET: 2FD; 2.40A {Trichomonas vaginalis} PDB: 1z33_A* 1z35_A* 1z36_A* 1z37_A* 1z38_A* 1z39_A* 2i4t_A* 2isc_A* Back     alignment and structure
>1odk_A Purine nucleoside phosphorylase; alpha-beta protein, transferase, riken structural genomics/proteomics initiative, RSGI; 1.9A {Thermus thermophilus} SCOP: c.56.2.1 PDB: 1odj_A* 1odi_A 1odl_A Back     alignment and structure
>1je0_A MTAP;, 5'-methylthioadenosine phosphorylase; alpha-beta protein, transferase; 1.60A {Sulfolobus solfataricus} SCOP: c.56.2.1 PDB: 1jdt_A* 1jdu_A 1jdv_A* 1jdz_A* 1jds_A 1je1_A* 1jp7_A 1jpv_A Back     alignment and structure
>1vhw_A Purine nucleoside phosphorylase; structural genomics, transferase; HET: ADN; 1.54A {Vibrio cholerae} SCOP: c.56.2.1 PDB: 1vhj_A* 3of3_A* 3occ_A* 1pw7_A* 1pr1_A* 1pr2_A* 1pr4_A* 1pr5_A* 1pr0_A* 1pr6_A* 3onv_A 1pk7_A* 1k9s_A* 1pke_A* 1pk9_A 3ooe_A 3ooh_A 1ecp_A 1a69_A 1oty_A* ... Back     alignment and structure
>3uaw_A PNP, purine nucleoside phosphorylase DEOD-type; necleoside phosphorylase I (NP-I) family, transferase; HET: ADN GOL; 1.20A {Bacillus cereus} PDB: 2ac7_A 3uav_A* 3uax_A* 1xe3_A 3uay_A* 3uaz_A* 4d8y_A 4d8x_A 4d8v_A 4d98_A 4d9h_A* 4da0_A* 4da6_A* 4da7_A* 4da8_A* 4dab_A* 4dae_A* 4dan_A* 4dao_A* 4dar_A* Back     alignment and structure
>3u40_A Pnpase, purine nucleoside phosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: ADN; 2.05A {Entamoeba histolytica} SCOP: c.56.2.0 PDB: 3tl6_A* Back     alignment and structure
>2b94_A Purine nucleoside phosphorylase; SGPP, structural genomics, PSI, protein structure initiative UDP, ontario/toronto SGC; 1.85A {Plasmodium knowlesi} PDB: 3emv_A 1sq6_A 2bsx_A* 3enz_A* Back     alignment and structure
>3phc_A Purine nucleoside phosphorylase; PNP,immucillin, transferase-transferase inhibitor complex; HET: IM5; 2.00A {Plasmodium falciparum} PDB: 1q1g_A* 1nw4_A* 3fow_A* Back     alignment and structure
>3mb8_A Purine nucleoside phosphorylase; PNP, immucillin H, IMMH, TR; HET: IMH; 1.90A {Toxoplasma gondii} Back     alignment and structure
>1cb0_A Protein (5'-deoxy-5'-methylthioadenosine phosphor; methylthioadenosine phosphorylase, purine nucleoside phospho purine salvage, adenine; HET: ADE; 1.70A {Homo sapiens} SCOP: c.56.2.1 PDB: 1cg6_A* 1k27_A* 1sd1_A* 1sd2_A* 3ozc_A* 3ozd_A* 3oze_A Back     alignment and structure
>3ddo_A Urdpase, upase, uridine phosphorylase; transferase, cytoplasm, glycosyltransferase; 1.50A {Salmonella typhimurium} SCOP: c.56.2.1 PDB: 1ryz_A 1sj9_A* 1y1q_A* 1y1s_A 1y1r_A 1zl2_A* 2hn9_A 1y1t_A* 2hsw_A 2hwu_A* 2pga_A* 2hrd_A 3dps_A 3fwp_A* 3nsr_A* 3c74_A* 2qdk_A 2iq5_A 2oec_A* 2i8a_A ... Back     alignment and structure
>1t8s_A AMP nucleosidase; alpha-beta-alpha sandwich, alpha-beta fold, hydrolase; HET: FMP; 2.60A {Escherichia coli} SCOP: c.56.2.1 PDB: 1t8r_A* 1t8w_A 1t8y_A 2guw_A Back     alignment and structure
>1wta_A 5'-methylthioadenosine phosphorylase; A/B structure, transferase; HET: ADE; 1.78A {Aeropyrum pernix} Back     alignment and structure
>2a8y_A 5'-methylthioadenosine phosphorylase (MTAP); alpha/beta, beta sheet, beta barrel, transferase; HET: MTA; 1.45A {Sulfolobus solfataricus} PDB: 3t94_A* 1v4n_A Back     alignment and structure
>1ybf_A AMP nucleosidase; structural genomics, protein structure initiative, PSI, NEW research center for structural genomics, nysgxrc; 2.90A {Bacteroides thetaiotaomicron} SCOP: c.56.2.1 Back     alignment and structure
>3p0f_A Uridine phosphorylase 2; transferase; HET: BAU; 1.54A {Homo sapiens} PDB: 3p0e_A* 2xrf_A Back     alignment and structure
>3qpb_A Uridine phosphorylase; hexamer, NP-I superfamily, pyrimidine salvage pathway, uridi phosphorylase, transition state; HET: R1P; 1.82A {Streptococcus pyogenes serotype M6} Back     alignment and structure
>3euf_A Uridine phosphorylase 1; nucleoside phosphorylase, uridine rescue, 5- benzylacyclouridine, alternative splicing, glycosyltransferase, transferase; HET: BAU; 1.90A {Homo sapiens} PDB: 3eue_A* 3nbq_A 3ku4_A 3kuk_A* 3kvr_A 3kvy_A Back     alignment and structure
>3ozb_A Methylthioadenosine phosphorylase; 5'-methylthioinosine,phosphorylase, transferase; HET: HPA; 2.80A {Pseudomonas aeruginosa} Back     alignment and structure
>3odg_A Xanthosine phosphorylase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; HET: XAN; 1.64A {Yersinia pseudotuberculosis} PDB: 1yqq_A* 1yqu_A* 1yr3_A* Back     alignment and structure
>3bje_A Nucleoside phosphorylase, putative; uridine phosphorylase, structural medical structural genomics of pathogenic protozoa consorti MSGPP; HET: R1P; 1.44A {Trypanosoma brucei} Back     alignment and structure
>1g2o_A Purine nucleoside phosphorylase; trimer, transition-state complex, transferase; HET: IMH; 1.75A {Mycobacterium tuberculosis} SCOP: c.56.2.1 PDB: 1i80_A* 1n3i_A* 3iom_A* Back     alignment and structure
>2p4s_A Purine nucleoside phosphorylase; transferase; HET: DIH; 2.20A {Anopheles gambiae} Back     alignment and structure
>1vmk_A Purine nucleoside phosphorylase; TM1596, structural genomics protein structure initiative, PSI, joint center for structu genomics; HET: GUN; 2.01A {Thermotoga maritima} SCOP: c.56.2.1 Back     alignment and structure
>1tcv_A Purine-nucleoside phosphorylase; transferase; HET: NDS; 1.75A {Schistosoma mansoni} PDB: 1tcu_A* 1td1_A 3djf_A* 3e0q_A* 3e9r_A* 3e9z_A* 3f8w_A* 3faz_A* 3fb1_A* 3fnq_A* 3iex_A* Back     alignment and structure
>3fuc_A Purine nucleoside phosphorylase; recombinant, glycosyltransferase, transferase, 9-deazaguanine, multisubstrate analogue inhibitors, nucleoside-binding; HET: 9D9 9DG; 1.45A {Bos taurus} SCOP: c.56.2.1 PDB: 1b8n_A* 1b8o_A* 2ai2_A* 1v48_A* 2ai1_A* 2ai3_A* 1lvu_A* 1lv8_A* 1a9o_A 1a9p_A* 1a9s_A* 1fxu_A* 2qpl_A* 1a9t_A* 3pnp_A 1pbn_A 4pnp_A 1a9q_A* 1a9r_A* 1vfn_A* ... Back     alignment and structure
>3la8_A SMU.1229, putative purine nucleoside phosphorylase; PUNA, glycosyltransferase, transferase; 1.80A {Streptococcus mutans} PDB: 3lba_A* Back     alignment and structure
>3khs_A Purine nucleoside phosphorylase; alpha-beta structure, mixed beta-barrel, hydrolase; 2.38A {Grouper iridovirus} SCOP: c.56.2.0 Back     alignment and structure
>3phb_E Purine nucleoside phosphorylase; PNP,immucillin, transferase-transferase inhibitor complex; HET: IM5; 2.30A {Homo sapiens} Back     alignment and structure
>1qe5_A Pentosyltransferase; enzyme, purine nucleoside phosphorylase; 2.20A {Cellulomonas SP} SCOP: c.56.2.1 PDB: 1c3x_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 217
d1jysa_230 c.56.2.1 (A:) 5'-Methylthioadenosine/S-Adenosylhom 1e-16
d1t8sa_477 c.56.2.1 (A:) AMP nucleosidase {Escherichia coli [ 8e-15
d2ac7a1231 c.56.2.1 (A:2-232) Purine nucleoside phosphorylase 6e-11
d1vhwa_237 c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP 2e-10
d1ybfa_246 c.56.2.1 (A:) AMP nucleosidase {Bacteroides thetai 3e-10
d1odka_234 c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP 3e-07
d1je0a_234 c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phos 2e-06
d1q1ga_243 c.56.2.1 (A:) Putative uridine phosphorylase {Plas 4e-06
d1rxya_250 c.56.2.1 (A:) Uridine phosphorylase {Escherichia c 2e-05
>d1jysa_ c.56.2.1 (A:) 5'-Methylthioadenosine/S-Adenosylhomocysteine nucleosidase {Escherichia coli [TaxId: 562]} Length = 230 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Purine and uridine phosphorylases
family: Purine and uridine phosphorylases
domain: 5'-Methylthioadenosine/S-Adenosylhomocysteine nucleosidase
species: Escherichia coli [TaxId: 562]

 Score = 73.4 bits (179), Expect = 1e-16
 Identities = 41/171 (23%), Positives = 75/171 (43%), Gaps = 14/171 (8%)

Query: 41  GTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDL 100
           G ++A+L     ++  KPD+IIN G+AGG       +GD+ +  +  +HD  +    ++ 
Sbjct: 51  GKVAAALGATLLLEHCKPDVIINTGSAGGLA-PTLKVGDIVVSDEARYHDADVTAFGYEY 109

Query: 101 YGVGQRQAF--STPNLLR---------ELNLKVCKLSTGDSLDMSSQDETSITAN--DAT 147
             +    A   +   L+           LN     + +GD+    S     I  N   A 
Sbjct: 110 GQLPGCPAGFKADDKLIAAAEACIAELNLNAVRGLIVSGDAFINGSVGLAKIRHNFPQAI 169

Query: 148 IKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDKPTAEEFMQNLVAVTAAL 198
             +ME  A+A+V   F VP + V+A++D+ D     + +    + A  ++L
Sbjct: 170 AVEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQSSL 220
>d1t8sa_ c.56.2.1 (A:) AMP nucleosidase {Escherichia coli [TaxId: 562]} Length = 477 Back     information, alignment and structure
>d2ac7a1 c.56.2.1 (A:2-232) Purine nucleoside phosphorylase, PNP {Bacillus anthracis [TaxId: 1392]} Length = 231 Back     information, alignment and structure
>d1vhwa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Vibrio cholerae [TaxId: 666]} Length = 237 Back     information, alignment and structure
>d1ybfa_ c.56.2.1 (A:) AMP nucleosidase {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 246 Back     information, alignment and structure
>d1odka_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Thermus thermophilus [TaxId: 274]} Length = 234 Back     information, alignment and structure
>d1je0a_ c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phosphorylase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 234 Back     information, alignment and structure
>d1q1ga_ c.56.2.1 (A:) Putative uridine phosphorylase {Plasmodium falciparum [TaxId: 5833]} Length = 243 Back     information, alignment and structure
>d1rxya_ c.56.2.1 (A:) Uridine phosphorylase {Escherichia coli [TaxId: 562]} Length = 250 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query217
d1jysa_230 5'-Methylthioadenosine/S-Adenosylhomocysteine nucl 100.0
d1rxya_250 Uridine phosphorylase {Escherichia coli [TaxId: 56 100.0
d1vhwa_237 Purine nucleoside phosphorylase, PNP {Vibrio chole 100.0
d2ac7a1231 Purine nucleoside phosphorylase, PNP {Bacillus ant 100.0
d1je0a_234 5'-deoxy-5'-methylthioadenosine phosphorylase {Arc 100.0
d1odka_234 Purine nucleoside phosphorylase, PNP {Thermus ther 99.97
d1q1ga_243 Putative uridine phosphorylase {Plasmodium falcipa 99.97
d1ybfa_246 AMP nucleosidase {Bacteroides thetaiotaomicron [Ta 99.96
d1t8sa_477 AMP nucleosidase {Escherichia coli [TaxId: 562]} 99.96
d1vmka_265 Purine nucleoside phosphorylase, PNP {Thermotoga m 99.65
d1g2oa_262 Purine nucleoside phosphorylase, PNP {Mycobacteriu 99.62
d1cb0a_273 5'-deoxy-5'-methylthioadenosine phosphorylase {Hum 99.6
d1v4na_266 5'-deoxy-5'-methylthioadenosine phosphorylase {Sul 99.58
d1qe5a_266 Purine nucleoside phosphorylase, PNP {Cellulomonas 99.55
d3pnpa_284 Purine nucleoside phosphorylase, PNP {Cow (Bos tau 99.51
>d1jysa_ c.56.2.1 (A:) 5'-Methylthioadenosine/S-Adenosylhomocysteine nucleosidase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Purine and uridine phosphorylases
family: Purine and uridine phosphorylases
domain: 5'-Methylthioadenosine/S-Adenosylhomocysteine nucleosidase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.6e-36  Score=247.99  Aligned_cols=191  Identities=25%  Similarity=0.386  Sum_probs=157.1

Q ss_pred             CCeeEEecCcEEEEEEEcceeEEEeeeeeEeeCCCCcCHHHHHHHHHHHHHhcCCCEEEEEeeecccCCCCCCcccEEEE
Q 027878            4 NGTDIDVVGHTCTQQEYEIHDLFFANLNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLI   83 (217)
Q Consensus         4 ~~~~~~~~g~~~~~G~~~~~~v~~~~v~~~~~G~~gvG~~~Aa~~~~~li~~~~~~~ii~~G~aG~l~~~~~~~GDvvi~   83 (217)
                      +.+..++++++||+|++++++|.+     +.+|   ||++||+.++++|+.+|+|+.||++|+|||++ +++++||++++
T Consensus        22 ~~~~~~~~~~~~~~g~~~g~~v~v-----~~~G---~G~~~aa~~~~~li~~~~~~~ii~~G~aG~l~-~~~~~Gdvvi~   92 (230)
T d1jysa_          22 NRQTISLGGCEIYTGQLNGTEVAL-----LKSG---IGKVAAALGATLLLEHCKPDVIINTGSAGGLA-PTLKVGDIVVS   92 (230)
T ss_dssp             EEEEEEETTEEEEEEEETTEEEEE-----EECC---SSHHHHHHHHHHHHHHHCCSEEEEEEEEEECS-TTCCTTCEEEE
T ss_pred             cCeEEEeCCeEEEEEEECCEEEEE-----EECC---CChhHHHHHHHHHHHhcCCcEEEEecccCCcc-ccccCCCEEEE
Confidence            456778899999999999999988     8899   99999999999999999999999999999999 79999999999


Q ss_pred             cceeeccCCCCCCCcccCCCCccCCC-----CChhHh---------hcCcceEEEEeecCceecChHhHHHHH-hC-CCc
Q 027878           84 SDVAFHDRRIPIPVFDLYGVGQRQAF-----STPNLL---------RELNLKVCKLSTGDSLDMSSQDETSIT-AN-DAT  147 (217)
Q Consensus        84 ~~~~~~d~~~~~p~f~~y~~g~~p~~-----~~~~l~---------~~~~~~~G~i~Sgd~~~~~~~~~~~l~-~~-~a~  147 (217)
                      +++++++.+.+..+   +..++.|..     +++.|.         .+++++.|+++|+|.|+.+.+.+.++. ++ +++
T Consensus        93 ~~~~~~~~~~~~~~---~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~t~~~~~~~~~~~~~l~~~~~~a~  169 (230)
T d1jysa_          93 DEARYHDADVTAFG---YEYGQLPGCPAGFKADDKLIAAAEACIAELNLNAVRGLIVSGDAFINGSVGLAKIRHNFPQAI  169 (230)
T ss_dssp             EEEEETTCBCGGGT---CCTTCCTTSCSSEECCHHHHHHHHHHHHHTTCCEEEEEEEECSBCCCSHHHHHHHHHHCTTEE
T ss_pred             eEEEEecccccccc---cccceeccceecccCCHHHHHHHHHHHHhcCCCeeEeEEeccCceeechHHHHHHHHhcccce
Confidence            99999887654222   333444433     244442         257889999999999999988887776 44 999


Q ss_pred             EEcccchHHHHHHHhCCCCEEEEEeeecCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027878          148 IKDMEGAAVAYVADLFKVPALFVKAVTDLVDGDKP-TAEEFMQNLVAVTAALEQSVSQVIDFI  209 (217)
Q Consensus       148 ~vdME~aava~~a~~~~ip~~~ir~ISD~~~~~~~-~~~~~~~~~~~a~~~~~~~l~~~l~~~  209 (217)
                      ++|||++|++++|+++++||++||+|||.+++++. ++++|   .+.++++..+++.++|+.|
T Consensus       170 ~vdME~aa~a~va~~~~ip~~~ir~ISD~~~~~~~~~~~~~---~~~a~~~~~~~i~~~i~~l  229 (230)
T d1jysa_         170 AVEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEF---LAVAAKQSSLMVESLVQKL  229 (230)
T ss_dssp             EEESSHHHHHHHHHHTTCCEEEEEEEEEETTC----CHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred             eeechHHHHHHHHHHcCCCEEEEEEEEcCCCCccccCHHHH---HHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999998776 45555   5556666677788888776
>d1rxya_ c.56.2.1 (A:) Uridine phosphorylase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vhwa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d2ac7a1 c.56.2.1 (A:2-232) Purine nucleoside phosphorylase, PNP {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1je0a_ c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phosphorylase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1odka_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1q1ga_ c.56.2.1 (A:) Putative uridine phosphorylase {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1ybfa_ c.56.2.1 (A:) AMP nucleosidase {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1t8sa_ c.56.2.1 (A:) AMP nucleosidase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vmka_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1g2oa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1cb0a_ c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phosphorylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v4na_ c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phosphorylase {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1qe5a_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Cellulomonas sp. [TaxId: 40001]} Back     information, alignment and structure
>d3pnpa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure