Citrus Sinensis ID: 027881

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------
Protein Sequence
MEAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAIFDQVNTSPIFKANSIYTTLLYDARLLLNITRSIKFA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccEEEEEEEEccEEEEccccEEEcccccccccccEEEccEEEEEEEEEEccccccccccccccccccccEEEccccccccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccccEEEEEEcccccEEEEEEEcccccccccccccccccccccccccHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHccccccEEEEEEEEcccEEEEcccEEEccccEEEEccHEEcccEEEEEEEEEccHHHHcccccccccccccccEcccccccccccEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccEEEEEEEEccccEEEEEccHHHHHcccccccccccEEEEEEEccccEEcccccccccc
Coil and Loop (DISEMBL)
meaartipgrenggncdiknlsrgskiylpvfvdganlstgdmhfsqgdgevTFCGAIEMSGFLDLKCEIIRGGMkeyltpmgptplhvnpifeigpveprfsEWLVFEGisvdesggqhYLDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSccpcegrisgivdspnavatlavptaifdqvntspifkansIYTTLLYDARLLLNITRSIKFA
Flexible Loop (DISEMBL)
meaartipgrenggncdiknlsrGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAifdqvntspifKANSIYTTLLYDARLLLNITRSIKFA
Low Complexity Region (SEG)
MEAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAIFDQVNTSPIFKANSIYTTLLYDARLLLNITRSIKFA
Disordered region (IsUnstruct)
***************CDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAIFDQVNTSPIFKANSIYTTLLYDARLLLNITRSI***
Disordered Region (DISOPRED)
***ARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAIFDQVNTS***********LLYDARLLLNITRS***A
Disordered Region (DISEMBL)
********GRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAIFDQVNTSPIFKANSIYTTLLYDARLLLNITRSIKFA
Disordered Region (DISPRO)
*****TIP*****GNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAIFDQVNTSPIFKANSIYTTLLYDARLLLNITRSIKF*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAIFDQVNTSPIFKANSIYTTLLYDARLLLNITRSIKFA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	217	2.2.26 [Sep-21-2011]
Q50228	407	Formamidase OS=Methylophi	N/A	no	0.801	0.427	0.571	8e-59
Q9URY7	410	Putative formamidase C869	yes	no	0.857	0.453	0.555	6e-56
Q07838	406	Acetamidase OS=Mycobacter	no	no	0.700	0.374	0.581	1e-48

>sp|Q50228|FMDA_METME Formamidase OS=Methylophilus methylotrophus GN=fmdA PE=1 SV=1

 Score =  226 bits (577), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 104/182 (57%), Positives = 137/182 (75%), Gaps = 8/182 (4%)

Query: 2   EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMS 61
           E ART+P R++GGNCDIKNL++GS++Y PV+V    LS GD+HFSQGDGE+TFCGAIEM+
Sbjct: 210 EGARTVPPRDHGGNCDIKNLTKGSRVYFPVYVKDGGLSMGDLHFSQGDGEITFCGAIEMA 269

Query: 62  GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHY 121
           G+LD+K  +I+ G+K+Y           NP+F+  P+ P + ++++FEGISVDE+G QHY
Sbjct: 270 GYLDIKVGLIKDGVKKYGIK--------NPVFQPSPITPTYRDYMIFEGISVDEAGKQHY 321

Query: 122 LDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAI 181
           LD  +AY++A LNAI+YL KFGYS EQ   +L   P EG ISGIVD PNA ATL +PT I
Sbjct: 322 LDVHIAYRQACLNAIEYLKKFGYSGEQAVSILGTAPVEGHISGIVDIPNACATLWIPTEI 381

Query: 182 FD 183
           F+
Sbjct: 382 FE 383

Hydrolyzes formamide with the production of ammonia which can be used as a source of nitrogen for growth. Also acts, more slowly, on acetamide, propanamide and butanamide.
Methylophilus methylotrophus (taxid: 17)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 4EC: 9

>sp|Q9URY7|FMDA_SCHPO Putative formamidase C869.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC869.04 PE=3 SV=1

 Score =  217 bits (552), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 110/198 (55%), Positives = 140/198 (70%), Gaps = 12/198 (6%)

Query: 2   EAARTIPGR-ENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEM 60
           E ARTIPGR ENGGNCDIKNLSRGSK++LPV V GA LS GD+HFSQGDGE++FCGAIEM
Sbjct: 212 EGARTIPGRPENGGNCDIKNLSRGSKVFLPVHVPGAKLSIGDLHFSQGDGEISFCGAIEM 271

Query: 61  SGFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRF--SEWLVFEGISVDESGG 118
           +G + +KC+I++ G+ +            +P++  GPVEP F  S +L FEG SVDESG 
Sbjct: 272 AGSITIKCKILKNGISDLAMK--------SPMYLPGPVEPHFSPSRYLTFEGFSVDESGK 323

Query: 119 QHYLDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVP 178
           QHYL  T AY++  L  I+Y  +FGY+  Q+YLLLSC P +G ++GIVD PN+  T+ VP
Sbjct: 324 QHYLCTTTAYRQTCLRVIEYFRRFGYNDYQLYLLLSCAPIQGHVAGIVDIPNSCTTIGVP 383

Query: 179 TAIFDQVNTSPIFKANSI 196
             IF + + SP  KA  I
Sbjct: 384 MDIF-EFDVSPNGKAKII 400

Hydrolyzes formamide with the production of ammonia which can be used as a source of nitrogen for growth. May also act on acetamide, propanamide and butanamide.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 9

>sp|Q07838|AMDA_MYCSM Acetamidase OS=Mycobacterium smegmatis GN=amdA PE=1 SV=2

 Score =  193 bits (490), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 93/160 (58%), Positives = 119/160 (74%), Gaps = 8/160 (5%)

Query: 2   EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMS 61
           + ART+P RENGGN DIKN +RGS+I+ PVFV+GA LS GD+HFSQGDGE+ FCGAIEM 
Sbjct: 218 DGARTVPPRENGGNHDIKNFTRGSRIFYPVFVEGAMLSGGDLHFSQGDGEINFCGAIEMG 277

Query: 62  GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQH- 120
           GF+D+  ++I+GGM+ Y        +  NPIF  G VEP +SEWL F GISVD +  ++ 
Sbjct: 278 GFIDMHVDLIKGGMETYG-------VTTNPIFMPGRVEPLYSEWLTFIGISVDHAENRNA 330

Query: 121 YLDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEG 160
           Y+DAT+AY+ A LNAI+YL K+GY+ EQ YL+L   P EG
Sbjct: 331 YMDATMAYRNACLNAIEYLKKWGYTGEQAYLILGTSPIEG 370

Allows acetamide to be used as a sole carbon or nitrogen source.

Mycobacterium smegmatis (taxid: 1772)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
225438974	451	PREDICTED: formamidase [Vitis vinifera]	0.843	0.405	0.967	1e-101
147768858	487	hypothetical protein VITISV_034053 [Viti	0.843	0.375	0.967	1e-101
222840535	452	formamidase [Lupinus albus]	0.843	0.404	0.956	1e-100
359480572	431	PREDICTED: formamidase [Vitis vinifera]	0.843	0.424	0.961	1e-100
359480566	451	PREDICTED: formamidase-like isoform 1 [V	0.843	0.405	0.956	1e-100
147768859	451	hypothetical protein VITISV_034054 [Viti	0.843	0.405	0.956	1e-100
225438972	451	PREDICTED: formamidase isoform 2 [Vitis	0.843	0.405	0.961	1e-100
147768857	451	hypothetical protein VITISV_034052 [Viti	0.843	0.405	0.961	1e-100
359480568	431	PREDICTED: formamidase-like isoform 2 [V	0.843	0.424	0.956	1e-100
255568565	452	Acetamidase, putative [Ricinus communis]	0.843	0.404	0.961	1e-100

>gi|225438974|ref|XP_002284318.1| PREDICTED: formamidase [Vitis vinifera] gi|296087333|emb|CBI33707.3| unnamed protein product [Vitis vinifera]

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/183 (96%), Positives = 182/183 (99%)

Query: 2   EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMS 61
           EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEV+FCGAIEMS
Sbjct: 230 EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVSFCGAIEMS 289

Query: 62  GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHY 121
           GFL+LKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESG QH+
Sbjct: 290 GFLELKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGRQHF 349

Query: 122 LDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAI 181
           LDATVAYKRAVLNAIDYLSKFGYSKEQ+YLLLSCCPCEGRISGIVDSPNAVATLA+PTAI
Sbjct: 350 LDATVAYKRAVLNAIDYLSKFGYSKEQMYLLLSCCPCEGRISGIVDSPNAVATLAIPTAI 409

Query: 182 FDQ 184
           FDQ
Sbjct: 410 FDQ 412

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147768858|emb|CAN78134.1| hypothetical protein VITISV_034053 [Vitis vinifera]

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/183 (96%), Positives = 182/183 (99%)

Query: 2   EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMS 61
           EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEV+FCGAIEMS
Sbjct: 266 EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVSFCGAIEMS 325

Query: 62  GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHY 121
           GFL+LKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESG QH+
Sbjct: 326 GFLELKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGRQHF 385

Query: 122 LDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAI 181
           LDATVAYKRAVLNAIDYLSKFGYSKEQ+YLLLSCCPCEGRISGIVDSPNAVATLA+PTAI
Sbjct: 386 LDATVAYKRAVLNAIDYLSKFGYSKEQMYLLLSCCPCEGRISGIVDSPNAVATLAIPTAI 445

Query: 182 FDQ 184
           FDQ
Sbjct: 446 FDQ 448

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222840535|gb|ACM68705.1| formamidase [Lupinus albus]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 175/183 (95%), Positives = 181/183 (98%)

Query: 2   EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMS 61
           EAARTIPGRENGGNCDIKNLSRGSKIYLPVFV+GANLSTGDMHFSQGDGEV+FCGAIEMS
Sbjct: 230 EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVEGANLSTGDMHFSQGDGEVSFCGAIEMS 289

Query: 62  GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHY 121
           GFL+LKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESG QHY
Sbjct: 290 GFLELKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGRQHY 349

Query: 122 LDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAI 181
           LDA+VAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVD+PNAVATLA+P AI
Sbjct: 350 LDASVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDAPNAVATLAIPIAI 409

Query: 182 FDQ 184
           FDQ
Sbjct: 410 FDQ 412

Source: Lupinus albus

Species: Lupinus albus

Genus: Lupinus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480572|ref|XP_003632495.1| PREDICTED: formamidase [Vitis vinifera]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 176/183 (96%), Positives = 181/183 (98%)

Query: 2   EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMS 61
           EAARTIPGRENGGNCDIKNLS GSKIYLPVFVDGANLSTGDMHFSQGDGEV+FCGAIEMS
Sbjct: 210 EAARTIPGRENGGNCDIKNLSTGSKIYLPVFVDGANLSTGDMHFSQGDGEVSFCGAIEMS 269

Query: 62  GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHY 121
           GFL+LKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESG QHY
Sbjct: 270 GFLELKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGRQHY 329

Query: 122 LDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAI 181
           LDA+VAYKRAVLNAIDYLSKFGYSKEQ+YLLLSCCPCEGRISGIVDSPNAVATLA+PTAI
Sbjct: 330 LDASVAYKRAVLNAIDYLSKFGYSKEQMYLLLSCCPCEGRISGIVDSPNAVATLAIPTAI 389

Query: 182 FDQ 184
           FDQ
Sbjct: 390 FDQ 392

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480566|ref|XP_002284324.2| PREDICTED: formamidase-like isoform 1 [Vitis vinifera] gi|296087332|emb|CBI33706.3| unnamed protein product [Vitis vinifera]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 175/183 (95%), Positives = 181/183 (98%)

Query: 2   EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMS 61
           EAART PGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEV+FCGAIEM+
Sbjct: 230 EAARTTPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVSFCGAIEMN 289

Query: 62  GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHY 121
           GFL+LKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESG QHY
Sbjct: 290 GFLELKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGRQHY 349

Query: 122 LDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAI 181
           LDA+VAYKRAVLNAIDYLSKFGYSKEQ+YLLLSCCPCEGRISGIVDSPNAVATLA+PTAI
Sbjct: 350 LDASVAYKRAVLNAIDYLSKFGYSKEQMYLLLSCCPCEGRISGIVDSPNAVATLAIPTAI 409

Query: 182 FDQ 184
           FDQ
Sbjct: 410 FDQ 412

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147768859|emb|CAN78135.1| hypothetical protein VITISV_034054 [Vitis vinifera]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 175/183 (95%), Positives = 181/183 (98%)

Query: 2   EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMS 61
           EAART PGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEV+FCGAIEM+
Sbjct: 230 EAARTTPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVSFCGAIEMN 289

Query: 62  GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHY 121
           GFL+LKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESG QHY
Sbjct: 290 GFLELKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGRQHY 349

Query: 122 LDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAI 181
           LDA+VAYKRAVLNAIDYLSKFGYSKEQ+YLLLSCCPCEGRISGIVDSPNAVATLA+PTAI
Sbjct: 350 LDASVAYKRAVLNAIDYLSKFGYSKEQMYLLLSCCPCEGRISGIVDSPNAVATLAIPTAI 409

Query: 182 FDQ 184
           FDQ
Sbjct: 410 FDQ 412

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438972|ref|XP_002284310.1| PREDICTED: formamidase isoform 2 [Vitis vinifera] gi|296087335|emb|CBI33709.3| unnamed protein product [Vitis vinifera]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 176/183 (96%), Positives = 181/183 (98%)

Query: 2   EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMS 61
           EAARTIPGRENGGNCDIKNLS GSKIYLPVFVDGANLSTGDMHFSQGDGEV+FCGAIEMS
Sbjct: 230 EAARTIPGRENGGNCDIKNLSTGSKIYLPVFVDGANLSTGDMHFSQGDGEVSFCGAIEMS 289

Query: 62  GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHY 121
           GFL+LKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESG QHY
Sbjct: 290 GFLELKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGRQHY 349

Query: 122 LDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAI 181
           LDA+VAYKRAVLNAIDYLSKFGYSKEQ+YLLLSCCPCEGRISGIVDSPNAVATLA+PTAI
Sbjct: 350 LDASVAYKRAVLNAIDYLSKFGYSKEQMYLLLSCCPCEGRISGIVDSPNAVATLAIPTAI 409

Query: 182 FDQ 184
           FDQ
Sbjct: 410 FDQ 412

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147768857|emb|CAN78133.1| hypothetical protein VITISV_034052 [Vitis vinifera]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 176/183 (96%), Positives = 181/183 (98%)

Query: 2   EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMS 61
           EAARTIPGRENGGNCDIKNLS GSKIYLPVFVDGANLSTGDMHFSQGDGEV+FCGAIEMS
Sbjct: 230 EAARTIPGRENGGNCDIKNLSTGSKIYLPVFVDGANLSTGDMHFSQGDGEVSFCGAIEMS 289

Query: 62  GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHY 121
           GFL+LKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESG QHY
Sbjct: 290 GFLELKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGRQHY 349

Query: 122 LDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAI 181
           LDA+VAYKRAVLNAIDYLSKFGYSKEQ+YLLLSCCPCEGRISGIVDSPNAVATLA+PTAI
Sbjct: 350 LDASVAYKRAVLNAIDYLSKFGYSKEQMYLLLSCCPCEGRISGIVDSPNAVATLAIPTAI 409

Query: 182 FDQ 184
           FDQ
Sbjct: 410 FDQ 412

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480568|ref|XP_003632494.1| PREDICTED: formamidase-like isoform 2 [Vitis vinifera]

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 175/183 (95%), Positives = 181/183 (98%)

Query: 2   EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMS 61
           EAART PGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEV+FCGAIEM+
Sbjct: 210 EAARTTPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVSFCGAIEMN 269

Query: 62  GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHY 121
           GFL+LKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESG QHY
Sbjct: 270 GFLELKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGRQHY 329

Query: 122 LDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAI 181
           LDA+VAYKRAVLNAIDYLSKFGYSKEQ+YLLLSCCPCEGRISGIVDSPNAVATLA+PTAI
Sbjct: 330 LDASVAYKRAVLNAIDYLSKFGYSKEQMYLLLSCCPCEGRISGIVDSPNAVATLAIPTAI 389

Query: 182 FDQ 184
           FDQ
Sbjct: 390 FDQ 392

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568565|ref|XP_002525256.1| Acetamidase, putative [Ricinus communis] gi|223535414|gb|EEF37084.1| Acetamidase, putative [Ricinus communis]

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 176/183 (96%), Positives = 181/183 (98%)

Query: 2   EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMS 61
           EAARTIPGRENGGNCDIKNLSRGSKIYLPVFV+GANLSTGDMHFSQGDGEV+FCGAIEMS
Sbjct: 230 EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVEGANLSTGDMHFSQGDGEVSFCGAIEMS 289

Query: 62  GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHY 121
           GFL+LKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDE G QHY
Sbjct: 290 GFLELKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDEGGRQHY 349

Query: 122 LDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAI 181
           LDA+VAYKRAVLNAIDYLSKFGYSKEQ+YLLLSCCPCEGRISGIVDSPNAVATLAVPTAI
Sbjct: 350 LDASVAYKRAVLNAIDYLSKFGYSKEQMYLLLSCCPCEGRISGIVDSPNAVATLAVPTAI 409

Query: 182 FDQ 184
           FDQ
Sbjct: 410 FDQ 412

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
TAIR|locus:2120086	452	AT4G37550 "AT4G37550" [Arabido	0.843	0.404	0.945	2.1e-93
TAIR|locus:2120101	452	AT4G37560 "AT4G37560" [Arabido	0.843	0.404	0.939	3.9e-92
ASPGD|ASPL0000074501	411	fmdS [Emericella nidulans (tax	0.801	0.423	0.6	9.9e-55
POMBASE|SPAC869.04	410	SPAC869.04 "formamidase-like p	0.857	0.453	0.555	1.5e-53
CGD|CAL0000012	423	orf19.1641 [Candida albicans (	0.824	0.423	0.596	2.4e-53
UNIPROTKB|G4N7R0	435	MGG_17079 "Formamidase" [Magna	0.824	0.411	0.565	1.7e-52
UNIPROTKB|Q5LSD4	312	SPO1834 "Acetamidase/formamida	0.299	0.208	0.455	2.5e-12
TIGR_CMR|SPO_1834	312	SPO_1834 "acetamidase/formamid	0.299	0.208	0.455	2.5e-12
UNIPROTKB|Q81Q40	304	BAS2418 "Acetamidase/formamida	0.317	0.226	0.402	1.8e-07
TIGR_CMR|BA_2596	304	BA_2596 "acetamidase/formamida	0.317	0.226	0.402	1.8e-07

TAIR|locus:2120086 AT4G37550 "AT4G37550" [Arabidopsis thaliana (taxid:3702)]

 Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
 Identities = 173/183 (94%), Positives = 180/183 (98%)

Query:     2 EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMS 61
             EAARTIPGRENGGNCDIKNLSRGSKIYLPVFV+GANLSTGDMHFSQGDGE++FCGAIEMS
Sbjct:   230 EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVEGANLSTGDMHFSQGDGEISFCGAIEMS 289

Query:    62 GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHY 121
             GFL+LKCEIIR GM+EYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESG QHY
Sbjct:   290 GFLELKCEIIRNGMQEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGKQHY 349

Query:   122 LDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAI 181
             LDATVAYKRAVLNAIDYL KFGYSKEQVYLLLSCCPCEGR+SGIVDSPNAVATLA+PTAI
Sbjct:   350 LDATVAYKRAVLNAIDYLFKFGYSKEQVYLLLSCCPCEGRLSGIVDSPNAVATLAIPTAI 409

Query:   182 FDQ 184
             FDQ
Sbjct:   410 FDQ 412

GO:0004328 "formamidase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0016811 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2120101 AT4G37560 "AT4G37560" [Arabidopsis thaliana (taxid:3702)]

 Score = 918 (328.2 bits), Expect = 3.9e-92, P = 3.9e-92
 Identities = 172/183 (93%), Positives = 178/183 (97%)

Query:     2 EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMS 61
             EAARTIPGRENGGNCDIKNLS GSKIYLPVFV+GANLSTGDMHFSQGDGE++FCGAIEMS
Sbjct:   230 EAARTIPGRENGGNCDIKNLSSGSKIYLPVFVEGANLSTGDMHFSQGDGEISFCGAIEMS 289

Query:    62 GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHY 121
             GFL+LKCEIIR GM+EYLTPMGPT LHVNPIFEIGPVEPRFSEWLVFEGISVDESG QHY
Sbjct:   290 GFLELKCEIIRNGMQEYLTPMGPTTLHVNPIFEIGPVEPRFSEWLVFEGISVDESGRQHY 349

Query:   122 LDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAI 181
             LDATVAYKRAVLNAIDYL KFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLA+PTAI
Sbjct:   350 LDATVAYKRAVLNAIDYLFKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAIPTAI 409

Query:   182 FDQ 184
             FDQ
Sbjct:   410 FDQ 412

GO:0004328 "formamidase activity" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0016811 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides" evidence=IEA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

ASPGD|ASPL0000074501 fmdS [Emericella nidulans (taxid:162425)]

 Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
 Identities = 111/185 (60%), Positives = 134/185 (72%)

Query:     2 EAARTIPGR-ENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEM 60
             E ARTIPGR E+GGNCDIKNLSRGSK+YLPV V GA  S GD+HFSQGDGE++FCGAIEM
Sbjct:   213 EGARTIPGRPEHGGNCDIKNLSRGSKVYLPVHVPGAKFSVGDLHFSQGDGEISFCGAIEM 272

Query:    61 SGFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFS--EWLVFEGISVDESGG 118
             +G + LK  +I+ GM +            +PIF  GPVEP+F    +L FEG SVDE G 
Sbjct:   273 AGVITLKFTVIKDGMAKMAMK--------SPIFHPGPVEPQFGPGRYLTFEGFSVDEKGK 324

Query:   119 QHYLDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVP 178
             QHYLDATVAY++  L  I+YL ++GY+  Q+YLLLSC P +G I+G+VD PNA  TL VP
Sbjct:   325 QHYLDATVAYRQTCLRVIEYLRRYGYNDYQIYLLLSCAPVQGHIAGLVDIPNACTTLGVP 384

Query:   179 TAIFD 183
               IFD
Sbjct:   385 MDIFD 389

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0004061 "arylformamidase activity" evidence=RCA

GO:0005576 "extracellular region" evidence=IDA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

POMBASE|SPAC869.04 SPAC869.04 "formamidase-like protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
 Identities = 110/198 (55%), Positives = 140/198 (70%)

Query:     2 EAARTIPGR-ENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEM 60
             E ARTIPGR ENGGNCDIKNLSRGSK++LPV V GA LS GD+HFSQGDGE++FCGAIEM
Sbjct:   212 EGARTIPGRPENGGNCDIKNLSRGSKVFLPVHVPGAKLSIGDLHFSQGDGEISFCGAIEM 271

Query:    61 SGFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFS--EWLVFEGISVDESGG 118
             +G + +KC+I++ G+ +            +P++  GPVEP FS   +L FEG SVDESG 
Sbjct:   272 AGSITIKCKILKNGISDLAMK--------SPMYLPGPVEPHFSPSRYLTFEGFSVDESGK 323

Query:   119 QHYLDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVP 178
             QHYL  T AY++  L  I+Y  +FGY+  Q+YLLLSC P +G ++GIVD PN+  T+ VP
Sbjct:   324 QHYLCTTTAYRQTCLRVIEYFRRFGYNDYQLYLLLSCAPIQGHVAGIVDIPNSCTTIGVP 383

Query:   179 TAIFDQVNTSPIFKANSI 196
               IF+  + SP  KA  I
Sbjct:   384 MDIFE-FDVSPNGKAKII 400

GO:0004328 "formamidase activity" evidence=ISM

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0034641 "cellular nitrogen compound metabolic process" evidence=ISM

CGD|CAL0000012 orf19.1641 [Candida albicans (taxid:5476)]

 Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
 Identities = 114/191 (59%), Positives = 137/191 (71%)

Query:     2 EAARTIPGR-ENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEM 60
             E ARTIPGR ENGGNCDIKNLSRGSK YLPV+VDGA LS GD+HFSQGDGE++FCGAIEM
Sbjct:   215 EGARTIPGRPENGGNCDIKNLSRGSKCYLPVYVDGAKLSVGDLHFSQGDGEISFCGAIEM 274

Query:    61 SGFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRF--SEWLVFEGISVDESGG 118
              G + +K  II+GG+K+            +PIF  G V+  +  S +L FEG SVDE+G 
Sbjct:   275 PGVITIKVSIIKGGIKKLSLK--------SPIFIPGDVQNHYGPSRYLTFEGFSVDEAGK 326

Query:   119 QHYLDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVP 178
             Q YL AT AY++A + AI+YL KFGY+  Q+YLLLS  P EG I+GIVD PNA  TL +P
Sbjct:   327 QQYLCATTAYRQACIRAIEYLRKFGYNDYQIYLLLSSAPIEGHIAGIVDVPNACTTLGIP 386

Query:   179 TAIFDQVNTSP 189
               IFD  + SP
Sbjct:   387 MDIFD-FDISP 396

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

UNIPROTKB|G4N7R0 MGG_17079 "Formamidase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
 Identities = 108/191 (56%), Positives = 136/191 (71%)

Query:     2 EAARTIPGR-ENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEM 60
             E ARTIPGR E+GGNCDIKNLSRGSK+YLPV V GA  S GD+HFSQGDGE++FCGAIEM
Sbjct:   211 EGARTIPGRPEHGGNCDIKNLSRGSKVYLPVHVSGAKFSVGDLHFSQGDGEISFCGAIEM 270

Query:    61 SGFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFS--EWLVFEGISVDESGG 118
             +G + +  ++I+ GM +    +G      +PI+  GPVEP F     + FEG SVD+ G 
Sbjct:   271 AGVITINFKVIKNGMAD----LGLK----SPIYIPGPVEPHFGPGRHIYFEGFSVDQHGK 322

Query:   119 QHYLDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVP 178
             QHY+D TVAY++  L  I+YL +FGYS  Q+YLL+SC P +G I+GIVD PNA  TL +P
Sbjct:   323 QHYMDVTVAYRQTCLRVIEYLRRFGYSDYQIYLLMSCAPIQGHIAGIVDIPNACTTLGLP 382

Query:   179 TAIFDQVNTSP 189
               IFD  + SP
Sbjct:   383 MDIFD-FDISP 392

GO:0005575 "cellular_component" evidence=ND

GO:0044271 "cellular nitrogen compound biosynthetic process" evidence=IEP

UNIPROTKB|Q5LSD4 SPO1834 "Acetamidase/formamidase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 142 (55.0 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
 Identities = 31/68 (45%), Positives = 45/68 (66%)

Query:     7 IPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCG-AIEMSGFLD 65
             +P R  GGN DI++ + G+ +YLPV V G  LS GD H +QGDGE+  CG AIE    + 
Sbjct:   155 VPPRRVGGNLDIRDNAVGTTLYLPVEVAGGLLSLGDTHAAQGDGEI--CGTAIESPMDVA 212

Query:    66 LKCEIIRG 73
             +K ++++G
Sbjct:   213 IKIDLLKG 220

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_1834 SPO_1834 "acetamidase/formamidase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 142 (55.0 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
 Identities = 31/68 (45%), Positives = 45/68 (66%)

Query:     7 IPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCG-AIEMSGFLD 65
             +P R  GGN DI++ + G+ +YLPV V G  LS GD H +QGDGE+  CG AIE    + 
Sbjct:   155 VPPRRVGGNLDIRDNAVGTTLYLPVEVAGGLLSLGDTHAAQGDGEI--CGTAIESPMDVA 212

Query:    66 LKCEIIRG 73
             +K ++++G
Sbjct:   213 IKIDLLKG 220

GO:0008150 "biological_process" evidence=ND

GO:0016811 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides" evidence=ISS

UNIPROTKB|Q81Q40 BAS2418 "Acetamidase/formamidase family protein" [Bacillus anthracis (taxid:1392)]

 Score = 138 (53.6 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 29/72 (40%), Positives = 46/72 (63%)

Query:    11 ENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEI 70
             ++GGN D K +  G+ + LPV V GA L+ GD+H + GDGE+   G +E++G + +   I
Sbjct:   150 DHGGNMDCKEIKEGTTLLLPVNVPGALLALGDLHAAMGDGEIGVSG-VEVAGEVTVTVHI 208

Query:    71 IRGGMKEYLTPM 82
             I+G  K++  PM
Sbjct:   209 IKG--KKWPLPM 218

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_2596 BA_2596 "acetamidase/formamidase family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 138 (53.6 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 29/72 (40%), Positives = 46/72 (63%)

Query:    11 ENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEI 70
             ++GGN D K +  G+ + LPV V GA L+ GD+H + GDGE+   G +E++G + +   I
Sbjct:   150 DHGGNMDCKEIKEGTTLLLPVNVPGALLALGDLHAAMGDGEIGVSG-VEVAGEVTVTVHI 208

Query:    71 IRGGMKEYLTPM 82
             I+G  K++  PM
Sbjct:   209 IKG--KKWPLPM 218


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.139   0.420    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      217       217   0.00090  112 3  11 22  0.37    33
                                                     32  0.39    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  171 KB (2100 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.00u 0.12s 17.12t   Elapsed:  00:00:01
  Total cpu time:  17.00u 0.12s 17.12t   Elapsed:  00:00:01
  Start:  Thu May  9 15:11:24 2013   End:  Thu May  9 15:11:25 2013

GO:0008150 "biological_process" evidence=ND

GO:0016811 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.5.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00019647001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (451 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00020745001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (367 aa)	•					•			0.902
	GSVIVG00036600001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (595 aa)						•			0.899
	GSVIVG00034207001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (449 aa)						•			0.899
	GS1-2	RecName- Full=Glutamine synthetase cytosolic isozyme 2; EC=6.3.1.2; AltName- Full=Glutamate--am [...] (356 aa)						•			0.899
	gs	SubName- Full=Putative uncharacterized protein (Chromosome chr1 scaffold_5, whole genome shotgu [...] (356 aa)						•			0.899
	gdhB	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (411 aa)						•			0.899
	GSVIVG00024561001	SubName- Full=Putative uncharacterized protein (Chromosome chr6 scaffold_3, whole genome shotgu [...] (717 aa)						•			0.899
	GSVIVG00023655001	RecName- Full=Glutamine synthetase; EC=6.3.1.2; (433 aa)						•			0.899
	GSVIVG00023211001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (710 aa)						•			0.899
	GSVIVG00019881001	RecName- Full=Glutamine synthetase; EC=6.3.1.2; (432 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	217
pfam03069	316	pfam03069, FmdA_AmdA, Acetamidase/Formamidase fami	2e-84
COG2421	305	COG2421, COG2421, Predicted acetamidase/formamidas	1e-42

>gnl|CDD|202525 pfam03069, FmdA_AmdA, Acetamidase/Formamidase family

 Score =  253 bits (647), Expect = 2e-84
 Identities = 101/181 (55%), Positives = 126/181 (69%), Gaps = 13/181 (7%)

Query: 5   RTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFL 64
            T   RENGGN DIKN++ GSK+YLPVFV+GA LS GD+H SQGDGEV FC AIEMSG +
Sbjct: 149 PTWNARENGGNLDIKNITEGSKVYLPVFVEGALLSIGDLHASQGDGEVCFC-AIEMSGEV 207

Query: 65  DLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDA 124
            +K E+I+GG++              P F+ GPVEPRF +WL+ EGISVDE+  +HYLDA
Sbjct: 208 TVKVEVIKGGLEWPGLET--------PPFDPGPVEPRFYDWLIVEGISVDEAIKEHYLDA 259

Query: 125 TVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAIFDQ 184
           T+AY+RA LN I+YL K+GY+ EQ YL LS  P  GR+S     PNA AT  +P  IF++
Sbjct: 260 TIAYRRACLNTIEYLEKYGYASEQAYLGLSQAPVPGRVS----IPNATATARIPGYIFEE 315

Query: 185 V 185
            
Sbjct: 316 D 316

This family includes amidohydrolases of formamide EC:3.5.1.49 and acetamide. Methylophilus methylotrophus fmdA forms a homotrimer suggesting all the members of this family also do. Length = 316

>gnl|CDD|225279 COG2421, COG2421, Predicted acetamidase/formamidase [Energy production and conversion]

 Score =  145 bits (367), Expect = 1e-42
 Identities = 65/180 (36%), Positives = 93/180 (51%), Gaps = 31/180 (17%)

Query: 5   RTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFL 64
            T P RE+GGN DIK+L+ GS +YLPVFV+GA LS GD+H +QGDGEV    AIE+   +
Sbjct: 150 STGPPREHGGNLDIKDLTEGSTVYLPVFVEGALLSIGDLHAAQGDGEVCGT-AIEVPAEV 208

Query: 65  DLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDA 124
            +K E+I+    E   P+  TP +                 L+  G              
Sbjct: 209 TVKVELIKNLNLE--WPILETPDY-----------------LITLGS---------GETL 240

Query: 125 TVAYKRAVLNAIDYLSK-FGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAIFD 183
             A K+A+ N ID+L +  G ++E  Y+L S    + R+S +VD PN   +  +P  IF+
Sbjct: 241 EKAAKQALKNMIDFLRRRNGLTREDAYMLASLA-VDLRVSQLVDVPNKTVSALLPLDIFE 299

Length = 305

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	217
COG2421	305	Predicted acetamidase/formamidase [Energy producti	100.0
PF03069	369	FmdA_AmdA: Acetamidase/Formamidase family; InterPr	100.0
PF03069	369	FmdA_AmdA: Acetamidase/Formamidase family; InterPr	97.23

>COG2421 Predicted acetamidase/formamidase [Energy production and conversion]

Probab=100.00  E-value=6.6e-54  Score=385.00  Aligned_cols=153  Identities=42%  Similarity=0.642  Sum_probs=142.4

Q ss_pred             cccCCCCCCcccccccCCCCCcEEEeeeeeCCeeeeccccccccCCcceecccceeeceEEEEEEEEEeCCcccccCCCC
Q 027881            4 ARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKEYLTPMG   83 (217)
Q Consensus         4 ~sTiPP~~~GGNmD~~~l~~GstlyLPV~v~GAll~~GD~HAaQGDGEV~g~gAiE~~~~vtlrv~viK~~~~~~l~~~~   83 (217)
                      ++|+||++||||||+|+|++|||+||||||+||+||+||.||+|||||||+| |+|++|++|+||+|+|+..   ++   
T Consensus       149 l~t~~p~~~GGNlD~k~l~~GstvylPV~V~GAllsiGD~Ha~qGDGEV~~t-aiEv~~~vTv~~~l~K~~~---~~---  221 (305)
T COG2421         149 LSTGPPREHGGNLDIKDLTEGSTVYLPVFVEGALLSIGDLHAAQGDGEVCGT-AIEVPAEVTVKVELIKNLN---LE---  221 (305)
T ss_pred             CCCCCCCccCCcCChhhccCCCEEEEEEEEcCceeeecchhhhccCCceEEE-EEEeccEEEEEEEEecCCc---cc---
Confidence            5899999999999999999999999999999999999999999999999997 7999999999999999965   33   


Q ss_pred             CCCCCCCCeeeeCCCCCCCCceEEEEeeccCCCCCcccCCHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHccccccCceE
Q 027881           84 PTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLS-KFGYSKEQVYLLLSCCPCEGRI  162 (217)
Q Consensus        84 ~~~~~~~P~~et~p~~~~~~~~i~~~G~~~de~~~~~~ldl~~A~r~A~~~mi~~L~-~~gl~~~eAy~L~S~a~~dl~I  162 (217)
                            ||+++|+      ++|+++ |++.         |++.|+|.|+++|+++|+ +.||+++|||||||++ +|+||
T Consensus       222 ------~Pi~~t~------~~~~~~-g~~~---------~l~~A~k~a~~~~i~~l~~~~~~~~~~Ay~L~Sla-vd~rV  278 (305)
T COG2421         222 ------WPILETP------DYLITL-GSGE---------TLEKAAKQALKNMIDFLRRRNGLTREDAYMLASLA-VDLRV  278 (305)
T ss_pred             ------CceEeCC------CeEEEE-eccc---------cHHHHHHHHHHHHHHHHHHhcCCCHHHhhheeeEE-EeeEE
Confidence                  9999996      777775 7754         488999999999999998 5999999999999999 99999


Q ss_pred             eeecCCCCeEEEEEeecccccccC
Q 027881          163 SGIVDSPNAVATLAVPTAIFDQVN  186 (217)
Q Consensus       163 sQvVd~p~~tv~~~iPk~if~~~~  186 (217)
                      ||+||+||++|++.+||++|++..
T Consensus       279 sq~V~~~n~~v~~~lP~~~f~~~~  302 (305)
T COG2421         279 SQLVDVPNKTVSALLPLDIFEELV  302 (305)
T ss_pred             EEEecCCccEEEEEeehHHhhhcc
Confidence            999999999999999999998754

>PF03069 FmdA_AmdA: Acetamidase/Formamidase family; InterPro: IPR004304 This family includes amidohydrolases of formamide 3

Probab=100.00  E-value=7.9e-48  Score=355.89  Aligned_cols=170  Identities=51%  Similarity=0.811  Sum_probs=120.8

Q ss_pred             CCcccCCCCCCcccccccCCCCCcEEEeeeeeCCeeeeccccccccCCcceecccceeeceEEEEEEEEEeCCcccccCC
Q 027881            2 EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKEYLTP   81 (217)
Q Consensus         2 ~~~sTiPP~~~GGNmD~~~l~~GstlyLPV~v~GAll~~GD~HAaQGDGEV~g~gAiE~~~~vtlrv~viK~~~~~~l~~   81 (217)
                      |+++|+||+.||||||+++|++||||||||+|+||+||+||+||+|||||||+| |||+++++|+||+|+|+..    .+
T Consensus       199 ~~~~t~~p~~~gGn~D~~~~~~G~~~~lPV~v~Ga~~~~GD~Ha~qGdgEv~~~-aie~~~~~~~~~~v~k~~~----~~  273 (369)
T PF03069_consen  199 EALSTVPPGEHGGNMDIKELTAGSTLYLPVFVPGALLSVGDLHAAQGDGEVCGT-AIETSGEVTLRVDVIKGGL----EW  273 (369)
T ss_dssp             H-BESSSEETTEEE---TTSSTTEEEEEE--STTEEEEEEEEESE--TBTTTSE-ECEE-EEEEEEEEEESSHC----SS
T ss_pred             cccccccCCCccccccchhhcCCCEEEEEEEECCcEEEecccccccCCcceeeE-eeccccEEEEEEEEEeCCc----CC
Confidence            568999999999999999999999999999999999999999999999999997 7999999999999999952    20


Q ss_pred             CCCCCCCCCCeeeeCCCCCCCCceEEEEeeccCCCCCcccCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHccccccCce
Q 027881           82 MGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGR  161 (217)
Q Consensus        82 ~~~~~~~~~P~~et~p~~~~~~~~i~~~G~~~de~~~~~~ldl~~A~r~A~~~mi~~L~~~gl~~~eAy~L~S~a~~dl~  161 (217)
                          |....|++.++|..+.+.+|++.+|.++++...+...|+..|+|+|+++||+|+.++||++++||+++|++ +|++
T Consensus       274 ----p~~~~p~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~a~~~~i~~~~~~~l~~~~a~~~~S~~-vd~~  348 (369)
T PF03069_consen  274 ----PRLETPIFDPGPIEPHFSEWIAVSGEDVDEALKQAVRDATEALRRALLNMIDYLDAYGLTSAQAYLLISQA-VDLR  348 (369)
T ss_dssp             ----TEEESSCEE--SESSEEE-EEEEEESSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHEEEEEES-SSSC
T ss_pred             ----ccccCccccCCCccccchhhhhhcCcchhhhhhhhhHHHHHHHHHHHHhhhhHHHHcCCCHHHhheEcccc-ccCC
Confidence                11113444445554444467777787766433333445556666666666777666677777777777776 6666


Q ss_pred             EeeecCCCCeEEEEEeecccccc
Q 027881          162 ISGIVDSPNAVATLAVPTAIFDQ  184 (217)
Q Consensus       162 IsQvVd~p~~tv~~~iPk~if~~  184 (217)
                         +||.||++|+++||++||.+
T Consensus       349 ---~Vdvpn~~v~~~lP~~If~~  368 (369)
T PF03069_consen  349 ---IVDVPNYTVSARLPKDIFVE  368 (369)
T ss_dssp             ---S-STT-EEEEEEEEGGGCSS
T ss_pred             ---eecccCcEEEEECChhhccc
Confidence               88899999999999999985

5.1.49 from EC and acetamide 3.5.1 from EC. The formamidase from Methylophilus methylotrophus (Bacterium W3A1) forms a homotrimer suggesting that this may be a common property of other members of this family.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0008152 metabolic process; PDB: 3TKK_D 3B9T_D 2II1_C 2F4L_C 2WKN_C.

>PF03069 FmdA_AmdA: Acetamidase/Formamidase family; InterPro: IPR004304 This family includes amidohydrolases of formamide 3

Probab=97.23  E-value=0.00035  Score=65.63  Aligned_cols=143  Identities=20%  Similarity=0.109  Sum_probs=84.6

Q ss_pred             EEeeeeeCCeeeecc----ccccccCCcceecccceeec---eEEEEEEEEEeCCcccccCCCCCCCCCCCCeeeeCCCC
Q 027881           27 IYLPVFVDGANLSTG----DMHFSQGDGEVTFCGAIEMS---GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVE   99 (217)
Q Consensus        27 lyLPV~v~GAll~~G----D~HAaQGDGEV~g~gAiE~~---~~vtlrv~viK~~~~~~l~~~~~~~~~~~P~~et~p~~   99 (217)
                      |=.+-..+|+-+|+-    -.=...||+=.+. |-=|+.   .++..++++.=.    .+..    . ..+|++++.-..
T Consensus       213 ~D~~~~~~G~~~~lPV~v~Ga~~~~GD~Ha~q-GdgEv~~~aie~~~~~~~~~~----v~k~----~-~~~p~~~~p~~~  282 (369)
T PF03069_consen  213 MDIKELTAGSTLYLPVFVPGALLSVGDLHAAQ-GDGEVCGTAIETSGEVTLRVD----VIKG----G-LEWPRLETPIFD  282 (369)
T ss_dssp             ---TTSSTTEEEEEE--STTEEEEEEEEESE---TBTTTSEECEE-EEEEEEEE----EESS----H-CSSTEEESSCEE
T ss_pred             ccchhhcCCCEEEEEEEECCcEEEeccccccc-CCcceeeEeeccccEEEEEEE----EEeC----C-cCCccccCcccc
Confidence            334444556666553    2335667776665 433544   456677777543    1331    1 458988874111


Q ss_pred             CC-CCceEE-EEeeccCCCCCcccCCHHHHHHHHHHHHHHHHH-H--cCCCHHHHHHHccccccCceEeeecCCCCeEEE
Q 027881          100 PR-FSEWLV-FEGISVDESGGQHYLDATVAYKRAVLNAIDYLS-K--FGYSKEQVYLLLSCCPCEGRISGIVDSPNAVAT  174 (217)
Q Consensus       100 ~~-~~~~i~-~~G~~~de~~~~~~ldl~~A~r~A~~~mi~~L~-~--~gl~~~eAy~L~S~a~~dl~IsQvVd~p~~tv~  174 (217)
                      +. .+.++. ..-+        ...|+++|+++++++|..+++ +  .++++.++|+|+|.+ +++.+||+||. +   .
T Consensus       283 ~~~~~~~~~~~~~~--------~~~~~~~a~~~~~~~~~~~~~~a~~~~i~~~~~~~l~~~~-a~~~~S~~vd~-~---~  349 (369)
T PF03069_consen  283 PGPIEPHFSEWIAV--------SGEDVDEALKQAVRDATEALRRALLNMIDYLDAYGLTSAQ-AYLLISQAVDL-R---I  349 (369)
T ss_dssp             --SESSEEE-EEEE--------EESSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH-HEEEEEESSSS-C---S
T ss_pred             CCCccccchhhhhh--------cCcchhhhhhhhhHHHHHHHHHHHHhhhhHHHHcCCCHHH-hheEccccccC-C---e
Confidence            11 011111 1111        236788999999999999997 4  799999999999998 89999999994 4   2


Q ss_pred             EEeecccccccCCccccc
Q 027881          175 LAVPTAIFDQVNTSPIFK  192 (217)
Q Consensus       175 ~~iPk~if~~~~~~~~~~  192 (217)
                      ..+|-..-....+..||.
T Consensus       350 Vdvpn~~v~~~lP~~If~  367 (369)
T PF03069_consen  350 VDVPNYTVSARLPKDIFV  367 (369)
T ss_dssp             -STT-EEEEEEEEGGGCS
T ss_pred             ecccCcEEEEECChhhcc
Confidence            334555444455555553

5.1.49 from EC and acetamide 3.5.1 from EC. The formamidase from Methylophilus methylotrophus (Bacterium W3A1) forms a homotrimer suggesting that this may be a common property of other members of this family.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0008152 metabolic process; PDB: 3TKK_D 3B9T_D 2II1_C 2F4L_C 2WKN_C.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	217
2wkn_A	409	Gamma Lactamase From Delftia Acidovorans Length = 4		1e-63
2ii1_A	301	Crystal Structure Of Acetamidase (10172637) From Ba		1e-10
3tkk_A	301	Crystal Structure Analysis Of A Recombinant Predict		5e-10
2f4l_A	297	Crystal Structure Of A Putative Acetamidase (tm0119		4e-06
3b9t_A	484	Crystal Structure Of Predicted AcetamidaseFORMAMIDA		2e-04

>pdb|2WKN|A Chain A, Gamma Lactamase From Delftia Acidovorans Length = 409

Iteration: 1
 Score =  239 bits (609), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 111/182 (60%), Positives = 139/182 (76%), Gaps = 8/182 (4%)
Query: 2   EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMS 61
           E ART+P RE+GGNCDIK+LSRGS+++ PV+VDGA LS GD+HFSQGDGE+TFCGAIEM+
Sbjct: 210 EGARTVPPREHGGNCDIKDLSRGSRVFFPVYVDGAGLSVGDLHFSQGDGEITFCGAIEMA 269
Query: 62  GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHY 121
           G++ +K  +I+GGM +Y           NPIF+  P+ P + ++L+FEGISVDE G QHY
Sbjct: 270 GWVHMKVSLIKGGMAKYGIK--------NPIFKPSPMTPNYKDYLIFEGISVDEKGKQHY 321
Query: 122 LDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAI 181
           LD TVAY++A LNAI+YL KFGYS  Q Y LL   P +G ISG+VD PNA ATL +PT I
Sbjct: 322 LDVTVAYRQACLNAIEYLKKFGYSGAQAYSLLGTAPVQGHISGVVDVPNACATLWLPTEI 381
Query: 182 FD 183
           FD
Sbjct: 382 FD 383

>pdb|2II1|A Chain A, Crystal Structure Of Acetamidase (10172637) From Bacillus Halodurans At 1.95 A Resolution Length = 301

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 12  NGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEII 71
           +GGN D K++  G+ +YLPV VDGA L+ GD+H + GDGE+  CG +E++G + LK  + 
Sbjct: 152 HGGNLDTKDIKPGTTVYLPVEVDGALLALGDLHAAXGDGEILICG-VEIAGTVTLKVNVK 210
Query: 72  R 72
           +
Sbjct: 211 K 211

>pdb|3TKK|A Chain A, Crystal Structure Analysis Of A Recombinant Predicted Acetamidase Formamidase From The Thermophile Thermoanaerobacter Tengcongensis Length = 301

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 8   PGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLK 67
           PG  +GGN D   ++ G+++Y PVFV+GA L+ GD+H   GDGEV   G +E++G + L+
Sbjct: 151 PGS-HGGNMDTTLIAEGAEVYFPVFVEGALLALGDLHALMGDGEVGVSG-VEVAGKVLLE 208
Query: 68  CEIIRG 73
            E+I+G
Sbjct: 209 VEVIKG 214

>pdb|2F4L|A Chain A, Crystal Structure Of A Putative Acetamidase (tm0119) From Thermotoga Maritima Msb8 At 2.50 A Resolution Length = 297

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 9   GRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEV 52
              +GGN D K ++    ++LPVF +GA L+ GD+H + GDGEV
Sbjct: 152 AHRHGGNXDTKEITENVTVHLPVFQEGALLALGDVHATXGDGEV 195

>pdb|3B9T|A Chain A, Crystal Structure Of Predicted AcetamidaseFORMAMIDASE (YP_546212.1) From Methylobacillus Flagellatus Kt At 1.58 A Resolution Length = 484

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 6   TIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCG-AIEMS 61
           ++P    GGN D   + +G+  Y PV V G   S GD H SQGD E   CG AIE S
Sbjct: 306 SVPPSHFGGNIDNWRIGKGATXYYPVSVAGGLFSVGDPHASQGDSEX--CGTAIECS 360

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	217
2wkn_A	409	Formamidase, gamma-lactamase; hydrolase, biocataly	1e-65
3b9t_A	484	Twin-arginine translocation pathway signal protei;	2e-45
2f4l_A	297	Acetamidase, putative; structural genomics, joint	4e-42
2ii1_A	301	Acetamidase; 10172637, structural genomics, joint	2e-40
3mjj_A	301	Predicted acetamidase/formamidase; beta/alpha stru	1e-39

>2wkn_A Formamidase, gamma-lactamase; hydrolase, biocatalysis; 2.08A {Delftia acidovorans} Length = 409

 Score =  207 bits (526), Expect = 1e-65
 Identities = 111/183 (60%), Positives = 139/183 (75%), Gaps = 8/183 (4%)

Query: 2   EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMS 61
           E ART+P RE+GGNCDIK+LSRGS+++ PV+VDGA LS GD+HFSQGDGE+TFCGAIEM+
Sbjct: 210 EGARTVPPREHGGNCDIKDLSRGSRVFFPVYVDGAGLSVGDLHFSQGDGEITFCGAIEMA 269

Query: 62  GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHY 121
           G++ +K  +I+GGM +Y           NPIF+  P+ P + ++L+FEGISVDE G QHY
Sbjct: 270 GWVHMKVSLIKGGMAKYGIK--------NPIFKPSPMTPNYKDYLIFEGISVDEKGKQHY 321

Query: 122 LDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTAI 181
           LD TVAY++A LNAI+YL KFGYS  Q Y LL   P +G ISG+VD PNA ATL +PT I
Sbjct: 322 LDVTVAYRQACLNAIEYLKKFGYSGAQAYSLLGTAPVQGHISGVVDVPNACATLWLPTEI 381

Query: 182 FDQ 184
           FD 
Sbjct: 382 FDF 384

>3b9t_A Twin-arginine translocation pathway signal protei; YP_546212.1, predicted acetamidase/formamidase, acetamidase/formamidase family; 1.58A {Methylobacillus flagellatus KT} Length = 484

 Score =  155 bits (393), Expect = 2e-45
 Identities = 44/186 (23%), Positives = 69/186 (37%), Gaps = 11/186 (5%)

Query: 1   MEAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEM 60
            +   ++P    GGN D   + +G+ +Y PV V G   S GD H SQGD E+     IE 
Sbjct: 301 ADLVNSVPPSHFGGNIDNWRIGKGATMYYPVSVAGGLFSVGDPHASQGDSEMCGTA-IEC 359

Query: 61  SGFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGP--VEPRFSEWLVFEGISVDE-SG 117
           S     +  + +        P  P      P+ E     V   FS       +  D  + 
Sbjct: 360 SLTGTFQFILHKKAD----LPGTPLADLQYPLLETQDEWVLHGFSYANYLAELGPDAQNS 415

Query: 118 GQHYLDATVAYKRAVLNAIDYLSK-FGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLA 176
                   +A K A      +L +    ++++   L+S    +  I+ +VD  N      
Sbjct: 416 IFSKSSLDLALKDAFRKMRHFLMQTQNLTEDEAVSLMSIG-VDFGITQVVD-GNWGVHAV 473

Query: 177 VPTAIF 182
           V   IF
Sbjct: 474 VKKGIF 479

>2f4l_A Acetamidase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 2.50A {Thermotoga maritima} SCOP: b.23.3.1 Length = 297

 Score =  143 bits (361), Expect = 4e-42
 Identities = 41/185 (22%), Positives = 71/185 (38%), Gaps = 33/185 (17%)

Query: 2   EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMS 61
               T     +GGN D K ++    ++LPVF +GA L+ GD+H + GDGEV    A E+ 
Sbjct: 145 GEYPTGTAHRHGGNMDTKEITENVTVHLPVFQEGALLALGDVHATMGDGEVC-VSACEVP 203

Query: 62  GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHY 121
             + ++ ++ +  +K    P+  T                   + +   +          
Sbjct: 204 AKVVVEIDVSKEEIK---WPVVETN----------------DAYYIIVSLP--------- 235

Query: 122 LDATVAYKRAVLNAIDYLSK-FGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTA 180
            D   A K      + ++ +         Y+L S    +  IS +V+ P   A   +P  
Sbjct: 236 -DIEEALKEVTRETVWFIQRRKTIPFTDAYMLASLS-VDVGISQLVN-PAKTAKARIPKY 292

Query: 181 IFDQV 185
           IF  V
Sbjct: 293 IFTGV 297

>2ii1_A Acetamidase; 10172637, structural genomics, joint center for structural genomics, PSI-2, protein structure initiative, J hydrolase; 1.95A {Bacillus halodurans} Length = 301

 Score =  139 bits (351), Expect = 2e-40
 Identities = 47/185 (25%), Positives = 78/185 (42%), Gaps = 32/185 (17%)

Query: 2   EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMS 61
           E         +GGN D K++  G+ +YLPV VDGA L+ GD+H + GDGE+  CG +E++
Sbjct: 142 EPINNGTPGPHGGNLDTKDIKPGTTVYLPVEVDGALLALGDLHAAMGDGEILICG-VEIA 200

Query: 62  GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHY 121
           G + LK  + +  M     P   T                     +    +         
Sbjct: 201 GTVTLKVNVKKERMFPL--PALKTD-----------------THFMTIASAE-------- 233

Query: 122 LDATVAYKRAVLNAIDYL-SKFGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTA 180
                A  +A  N   +L ++   S E+  +LLS    +  +S IV+ P   A  ++   
Sbjct: 234 -TLDAAAVQATKNMATFLANRTALSIEEAGMLLSGA-GDLYVSQIVN-PLKTARFSLALH 290

Query: 181 IFDQV 185
            F+++
Sbjct: 291 YFEKL 295

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	217
2wkn_A	409	Formamidase, gamma-lactamase; hydrolase, biocataly	100.0
2ii1_A	301	Acetamidase; 10172637, structural genomics, joint	100.0
2f4l_A	297	Acetamidase, putative; structural genomics, joint	100.0
3mjj_A	301	Predicted acetamidase/formamidase; beta/alpha stru	100.0
3b9t_A	484	Twin-arginine translocation pathway signal protei;	100.0

>2wkn_A Formamidase, gamma-lactamase; hydrolase, biocatalysis; 2.08A {Delftia acidovorans}

Probab=100.00  E-value=1.9e-59  Score=436.50  Aligned_cols=179  Identities=61%  Similarity=1.095  Sum_probs=164.7

Q ss_pred             CCcccCCCCCCcccccccCCCCCcEEEeeeeeCCeeeeccccccccCCcceecccceeeceEEEEEEEEEeCCccc-ccC
Q 027881            2 EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKE-YLT   80 (217)
Q Consensus         2 ~~~sTiPP~~~GGNmD~~~l~~GstlyLPV~v~GAll~~GD~HAaQGDGEV~g~gAiE~~~~vtlrv~viK~~~~~-~l~   80 (217)
                      |++||+||++||||||||+|++||||||||+|+|||||+||+||+|||||||+|||||+++++||||+|+|+++.+ .+.
T Consensus       210 e~~~TvpP~~hGGNmDik~l~~GstlYLPV~V~GAlfsvGD~HaaQGDGEI~~cgAiE~s~~vtl~v~viK~~~~~~~l~  289 (409)
T 2wkn_A          210 EGARTVPPREHGGNCDIKDLSRGSRVFFPVYVDGAGLSVGDLHFSQGDGEITFCGAIEMAGWVHMKVSLIKGGMAKYGIK  289 (409)
T ss_dssp             HCBCSSSEETTEESCCCTTSCTTCEEEEECCSTTEEEEEEEEESCCCTBCTTEEEEEECCEEEEEEEEEETTHHHHTTCS
T ss_pred             ccccccCCCCccccccchhccCCcEEEEEEEecCceEeccCchhccCCCccccceeeecceEEEEEEEEEcCcccccCCC
Confidence            4789999999999999999999999999999999999999999999999999998999999999999999995321 133


Q ss_pred             CCCCCCCCCCCeeeeCCCCCCCCceEEEEeeccCCCCCcccCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHccccccCc
Q 027881           81 PMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLSKFGYSKEQVYLLLSCCPCEG  160 (217)
Q Consensus        81 ~~~~~~~~~~P~~et~p~~~~~~~~i~~~G~~~de~~~~~~ldl~~A~r~A~~~mi~~L~~~gl~~~eAy~L~S~a~~dl  160 (217)
                               +|++++++..|.+++|++++|++.|++|.++++|+++|+|+|+++||+||+++|||++|||+|||+|.+|+
T Consensus       290 ---------~P~~e~~~~~p~~~~~li~~G~~~d~~g~~~~ld~~~A~r~A~~~~i~~L~~~Gls~~eAy~LlS~a~~d~  360 (409)
T 2wkn_A          290 ---------NPIFKPSPMTPNYKDYLIFEGISVDEKGKQHYLDVTVAYRQACLNAIEYLKKFGYSGAQAYSLLGTAPVQG  360 (409)
T ss_dssp             ---------SCEEECCSCCBCCCCEEEEEEESBCTTCCBCSSCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHSCCEE
T ss_pred             ---------CCeecCCCCCCccCcEEEEEeeccccccccccccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCcccccc
Confidence                     89999987776557787778999999999999999999999999999999989999999999999964799


Q ss_pred             eEeeecCCCCeEEEEEeecccccccCCcc
Q 027881          161 RISGIVDSPNAVATLAVPTAIFDQVNTSP  189 (217)
Q Consensus       161 ~IsQvVd~p~~tv~~~iPk~if~~~~~~~  189 (217)
                      +||||||.||++|++.|||+||+..+.|.
T Consensus       361 rIsqVVD~pn~~v~~~lP~~if~~~~~p~  389 (409)
T 2wkn_A          361 HISGVVDVPNACATLWLPTEIFDFDINPT  389 (409)
T ss_dssp             EEEESCSTTCCEEEEEEEGGGBSSCCSCC
T ss_pred             EeccEecCCCcEEEEEeEHHHcccccCCC
Confidence            99999999999999999999999877766

>2ii1_A Acetamidase; 10172637, structural genomics, joint center for structural genomics, PSI-2, protein structure initiative, J hydrolase; 1.95A {Bacillus halodurans}

Probab=100.00  E-value=8.2e-58  Score=411.38  Aligned_cols=155  Identities=29%  Similarity=0.495  Sum_probs=143.5

Q ss_pred             CCcccCCCCCCcccccccCCCCCcEEEeeeeeCCeeeeccccccccCCcceecccceeeceEEEEEEEEEeCCcccccCC
Q 027881            2 EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKEYLTP   81 (217)
Q Consensus         2 ~~~sTiPP~~~GGNmD~~~l~~GstlyLPV~v~GAll~~GD~HAaQGDGEV~g~gAiE~~~~vtlrv~viK~~~~~~l~~   81 (217)
                      ++++|+||++||||||+|+|++||||||||+|+|||||+||+||+|||||||+| |||+++++|+||+|+|+..   ++ 
T Consensus       142 ~~~~t~pP~~~GGNmD~~~l~~GstlylPV~v~GAl~s~GD~Ha~QGDGEv~~t-aiE~~~~vt~~v~viK~~~---l~-  216 (301)
T 2ii1_A          142 EPINNGTPGPHGGNLDTKDIKPGTTVYLPVEVDGALLALGDLHAAMGDGEILIC-GVEIAGTVTLKVNVKKERM---FP-  216 (301)
T ss_dssp             SCEETTSCBTTEEECCCTTCSTTCEEEEECCSTTEEEEEEEEESCCCTBCTTSC-CSEECEEEEEEEEEESSCC---SC-
T ss_pred             CCcCcCCCCccccccchhhhcCCCEEEEEEEeCCceEEecCceeccCCCcceee-EEEeeeEEEEEEEEECCCC---CC-
Confidence            578999999999999999999999999999999999999999999999999997 5999999999999999853   33 


Q ss_pred             CCCCCCCCCCeeeeCCCCCCCCceEEEEeeccCCCCCcccCCHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHccccccCc
Q 027881           82 MGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLS-KFGYSKEQVYLLLSCCPCEG  160 (217)
Q Consensus        82 ~~~~~~~~~P~~et~p~~~~~~~~i~~~G~~~de~~~~~~ldl~~A~r~A~~~mi~~L~-~~gl~~~eAy~L~S~a~~dl  160 (217)
                              ||++|++      ++|+++ |++.|         |++|+|+|+++|++||+ ++|||++|||||||++ +|+
T Consensus       217 --------~P~~et~------~~~~~~-G~~~d---------l~~A~r~A~~~mi~~L~~~~gls~~eAy~llS~a-~d~  271 (301)
T 2ii1_A          217 --------LPALKTD------THFMTI-ASAET---------LDAAAVQATKNMATFLANRTALSIEEAGMLLSGA-GDL  271 (301)
T ss_dssp             --------SSEEECS------SEEEEE-EEESS---------HHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHH-CEE
T ss_pred             --------CCEEECC------CcEEEE-EECCC---------HHHHHHHHHHHHHHHHHHhcCcCHHHHHHHhHhh-cCc
Confidence                    9999996      677765 88654         88999999999999997 6999999999999999 999


Q ss_pred             eEeeecCCCCeEEEEEeecccccccCC
Q 027881          161 RISGIVDSPNAVATLAVPTAIFDQVNT  187 (217)
Q Consensus       161 ~IsQvVd~p~~tv~~~iPk~if~~~~~  187 (217)
                      +|||+|| ||++|++.|||++|++.+.
T Consensus       272 ~IsqvVd-p~~~v~~~ipk~if~~~g~  297 (301)
T 2ii1_A          272 YVSQIVN-PLKTARFSLALHYFEKLGV  297 (301)
T ss_dssp             EEEESSS-SSEEEEEEEEHHHHHHTTC
T ss_pred             EEEEecC-CCeEEEEEEEHHHhhhcCC
Confidence            9999999 9999999999999987654

>2f4l_A Acetamidase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 2.50A {Thermotoga maritima} SCOP: b.23.3.1

Probab=100.00  E-value=2.5e-57  Score=407.54  Aligned_cols=151  Identities=26%  Similarity=0.408  Sum_probs=140.6

Q ss_pred             CCcccCCCCCCcccccccCCCCCcEEEeeeeeCCeeeeccccccccCCcceecccceeeceEEEEEEEEEeCCcccccCC
Q 027881            2 EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKEYLTP   81 (217)
Q Consensus         2 ~~~sTiPP~~~GGNmD~~~l~~GstlyLPV~v~GAll~~GD~HAaQGDGEV~g~gAiE~~~~vtlrv~viK~~~~~~l~~   81 (217)
                      ++++|+||++||||||||+|++||||||||+|+|||||+||+||+|||||||+| |||+++++|+||+|+|+ .   ++ 
T Consensus       145 ~~~~t~pP~~~GGNmD~~~l~~GstlylPV~V~GAl~s~GD~HaaQGDGEv~~t-aiE~~~~vtl~v~viK~-~---l~-  218 (297)
T 2f4l_A          145 GEYPTGTAHRHGGNMDTKEITENVTVHLPVFQEGALLALGDVHATMGDGEVCVS-ACEVPAKVVVEIDVSKE-E---IK-  218 (297)
T ss_dssp             SEEETTSEETTEEECCCTTCCTTCEEEEECCSTTEEEEEEEEESCCCTBCTTSC-CCBCCEEEEEEEEEECC-C---CS-
T ss_pred             cCcCCCCCCccccccchhhhcCCCEEEEEEEeCCceEEecCceeccCCCcccee-EEEeeeEEEEEEEEeCC-C---CC-
Confidence            568999999999999999999999999999999999999999999999999997 59999999999999998 3   44 


Q ss_pred             CCCCCCCCCCeeeeCCCCCCCCceEEEEeeccCCCCCcccCCHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHccccccCc
Q 027881           82 MGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLS-KFGYSKEQVYLLLSCCPCEG  160 (217)
Q Consensus        82 ~~~~~~~~~P~~et~p~~~~~~~~i~~~G~~~de~~~~~~ldl~~A~r~A~~~mi~~L~-~~gl~~~eAy~L~S~a~~dl  160 (217)
                              ||++|++      ++|+++ |++.|         |++|+|+|+++|++||+ ++|||++|||+|||++ +|+
T Consensus       219 --------~P~~et~------~~~~~~-G~~~d---------l~~A~r~A~~~mi~~L~~~~gls~~eAy~llS~a-~d~  273 (297)
T 2f4l_A          219 --------WPVVETN------DAYYII-VSLPD---------IEEALKEVTRETVWFIQRRKTIPFTDAYMLASLS-VDV  273 (297)
T ss_dssp             --------SCEEECS------SEEEEE-EEESS---------HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHH-CEE
T ss_pred             --------CCEEECC------CcEEEE-EECCC---------HHHHHHHHHHHHHHHHHHhcCcCHHHHHHHhHhh-cCc
Confidence                    9999996      677765 88754         88999999999999997 6999999999999999 999


Q ss_pred             eEeeecCCCCeEEEEEeecccccc
Q 027881          161 RISGIVDSPNAVATLAVPTAIFDQ  184 (217)
Q Consensus       161 ~IsQvVd~p~~tv~~~iPk~if~~  184 (217)
                      +|||+|| ||++|++.|||++|++
T Consensus       274 ~IsqvVd-pn~~v~~~ipk~if~~  296 (297)
T 2f4l_A          274 GISQLVN-PAKTAKARIPKYIFTG  296 (297)
T ss_dssp             EEEESSS-SSEEEEEEEEGGGTC-
T ss_pred             EEEEEcC-CCeEEEEEEEHHHccC
Confidence            9999999 9999999999999985

>3b9t_A Twin-arginine translocation pathway signal protei; YP_546212.1, predicted acetamidase/formamidase, acetamidase/formamidase family; 1.58A {Methylobacillus flagellatus KT}

Probab=100.00  E-value=1.7e-54  Score=409.88  Aligned_cols=169  Identities=27%  Similarity=0.351  Sum_probs=144.9

Q ss_pred             CCcccCCCCCCcccccccCCCCCcEEEeeeeeCCeeeeccccccccCCcceecccceeeceEEEEEEEEEeCCcccccCC
Q 027881            2 EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKEYLTP   81 (217)
Q Consensus         2 ~~~sTiPP~~~GGNmD~~~l~~GstlyLPV~v~GAll~~GD~HAaQGDGEV~g~gAiE~~~~vtlrv~viK~~~~~~l~~   81 (217)
                      +.++|+||++||||||||+|++||||||||+|+|||||+||+||+|||||||+| |||+++++||||+|+|+.... -+.
T Consensus       302 ~~~~TvpP~~hGGNmDik~L~~GStlYLPV~V~GAlfsvGD~HaaQGDGEvcGT-AIE~s~~vtl~v~ViK~~~~~-g~~  379 (484)
T 3b9t_A          302 DLVNSVPPSHFGGNIDNWRIGKGATMYYPVSVAGGLFSVGDPHASQGDSEMCGT-AIECSLTGTFQFILHKKADLP-GTP  379 (484)
T ss_dssp             SSEESSSCBTTEEECCCTTCSTTCEEEEECCSTTEEEEEEEEEEECCTBCTTSC-CEECCEEEEEEEEEECGGGCT-TST
T ss_pred             CCCCCCCCCCcCCccchhhhcCCcEEEEEEEecCceEeccCcccccCCCcccce-EEeeceEEEEEEEEEcCCccc-ccc
Confidence            567999999999999999999999999999999999999999999999999885 799999999999999985410 000


Q ss_pred             CCCCCCCCCCeeeeCCCCCCCCceEEEEeeccCC----CCCc------ccCCHHHHHHHHHHHHHHHHH-HcCCCHHHHH
Q 027881           82 MGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDE----SGGQ------HYLDATVAYKRAVLNAIDYLS-KFGYSKEQVY  150 (217)
Q Consensus        82 ~~~~~~~~~P~~et~p~~~~~~~~i~~~G~~~de----~~~~------~~ldl~~A~r~A~~~mi~~L~-~~gl~~~eAy  150 (217)
                      .   ....+|++||.      ++|+++ |+++++    .+.+      ...||++|+|+|+++||+||+ ++|||++|||
T Consensus       380 ~---~~l~~P~~et~------~~~i~~-G~s~~~~l~~~g~~~~~~i~~~~~Ld~A~r~A~~~mi~~L~~~~Gls~~eAy  449 (484)
T 3b9t_A          380 L---ADLQYPLLETQ------DEWVLH-GFSYANYLAELGPDAQNSIFSKSSLDLALKDAFRKMRHFLMQTQNLTEDEAV  449 (484)
T ss_dssp             T---TTCCSCEEECS------SEEEEE-EESSTTHHHHHGGGHHHHHHHHCCHHHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             c---cCCCCCccCCC------CeEEEE-EeccccchhhcccccccccccCCCHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence            0   11128999996      889864 997642    2221      014788999999999999997 7999999999


Q ss_pred             HHccccccCceEeeecCCCCeEEEEEeecccccc
Q 027881          151 LLLSCCPCEGRISGIVDSPNAVATLAVPTAIFDQ  184 (217)
Q Consensus       151 ~L~S~a~~dl~IsQvVd~p~~tv~~~iPk~if~~  184 (217)
                      +|||+| +|++|||||| ||++|++.|||++|++
T Consensus       450 ~LlS~a-~d~~IsQVVD-~n~~v~~~ipk~if~~  481 (484)
T 3b9t_A          450 SLMSIG-VDFGITQVVD-GNWGVHAVVKKGIFPG  481 (484)
T ss_dssp             HHHHHS-CEEEEEESSS-SSCEEEEEEEGGGCCC
T ss_pred             HHHHhh-cCceEEEEeC-CCeEEEEEEEHHHccc
Confidence            999999 9999999999 6999999999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	217
d2f4la1	283	b.23.3.1 (A:1-283) Putative acetamidase TM0119 {Th	1e-39

>d2f4la1 b.23.3.1 (A:1-283) Putative acetamidase TM0119 {Thermotoga maritima [TaxId: 2336]} Length = 283

class: All beta proteins
fold: CUB-like
superfamily: Acetamidase/Formamidase-like
family: Acetamidase/Formamidase-like
domain: Putative acetamidase TM0119
species: Thermotoga maritima [TaxId: 2336]

 Score =  135 bits (341), Expect = 1e-39
 Identities = 41/182 (22%), Positives = 70/182 (38%), Gaps = 33/182 (18%)

Query: 2   EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMS 61
               T     +GGN D K ++    ++LPVF +GA L+ GD+H + GDGEV    A E+ 
Sbjct: 133 GEYPTGTAHRHGGNMDTKEITENVTVHLPVFQEGALLALGDVHATMGDGEVC-VSACEVP 191

Query: 62  GFLDLKCEIIRGGMKEYLTPMGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHY 121
             + ++ ++ +  +K    P+  T      I  +  +E                      
Sbjct: 192 AKVVVEIDVSKEEIK---WPVVETNDAYYIIVSLPDIE---------------------- 226

Query: 122 LDATVAYKRAVLNAIDYLSK-FGYSKEQVYLLLSCCPCEGRISGIVDSPNAVATLAVPTA 180
                A K      + ++ +         Y+L S    +  IS +V+ P   A   +P  
Sbjct: 227 ----EALKEVTRETVWFIQRRKTIPFTDAYMLASLS-VDVGISQLVN-PAKTAKARIPKY 280

Query: 181 IF 182
           IF
Sbjct: 281 IF 282

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	217
d2f4la1	283	Putative acetamidase TM0119 {Thermotoga maritima [	100.0

>d2f4la1 b.23.3.1 (A:1-283) Putative acetamidase TM0119 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: CUB-like
superfamily: Acetamidase/Formamidase-like
family: Acetamidase/Formamidase-like
domain: Putative acetamidase TM0119
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.4e-56  Score=398.38  Aligned_cols=150  Identities=26%  Similarity=0.416  Sum_probs=139.5

Q ss_pred             CCcccCCCCCCcccccccCCCCCcEEEeeeeeCCeeeeccccccccCCcceecccceeeceEEEEEEEEEeCCcccccCC
Q 027881            2 EAARTIPGRENGGNCDIKNLSRGSKIYLPVFVDGANLSTGDMHFSQGDGEVTFCGAIEMSGFLDLKCEIIRGGMKEYLTP   81 (217)
Q Consensus         2 ~~~sTiPP~~~GGNmD~~~l~~GstlyLPV~v~GAll~~GD~HAaQGDGEV~g~gAiE~~~~vtlrv~viK~~~~~~l~~   81 (217)
                      +.++|+||++||||||||+|++||||||||+|+|||||+||+||+|||||||++ |||+++++||||+|+|+.    ++ 
T Consensus       133 g~~~t~~p~~~GGNmD~~~l~~GstlyLPV~v~GAll~~GD~HAaQGDGEv~gt-aiE~~~~vtl~v~v~K~~----~~-  206 (283)
T d2f4la1         133 GEYPTGTAHRHGGNMDTKEITENVTVHLPVFQEGALLALGDVHATMGDGEVCVS-ACEVPAKVVVEIDVSKEE----IK-  206 (283)
T ss_dssp             SEEETTSEETTEEECCCTTCCTTCEEEEECCSTTEEEEEEEEESCCCTBCTTSC-CCBCCEEEEEEEEEECCC----CS-
T ss_pred             ccccccCccccccccCchhhcCCCEEEEeeecCCcEEEeccceeecCCCceeeE-EEeeeeEEEEEEEEccCc----cc-
Confidence            356899999999999999999999999999999999999999999999999984 899999999999999984    23 


Q ss_pred             CCCCCCCCCCeeeeCCCCCCCCceEEEEeeccCCCCCcccCCHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHccccccCc
Q 027881           82 MGPTPLHVNPIFEIGPVEPRFSEWLVFEGISVDESGGQHYLDATVAYKRAVLNAIDYLS-KFGYSKEQVYLLLSCCPCEG  160 (217)
Q Consensus        82 ~~~~~~~~~P~~et~p~~~~~~~~i~~~G~~~de~~~~~~ldl~~A~r~A~~~mi~~L~-~~gl~~~eAy~L~S~a~~dl  160 (217)
                              ||++|++      ++|+++ |++.         ||++|+|+|+++|++||. ++||+++|||+|||++ +|+
T Consensus       207 --------~P~~et~------~~~~~~-g~~~---------~L~~A~r~A~~~mi~~l~~~~gl~~~eAy~L~S~a-~d~  261 (283)
T d2f4la1         207 --------WPVVETN------DAYYII-VSLP---------DIEEALKEVTRETVWFIQRRKTIPFTDAYMLASLS-VDV  261 (283)
T ss_dssp             --------SCEEECS------SEEEEE-EEES---------SHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHH-CEE
T ss_pred             --------CCcccCC------CcEEEe-CCCC---------CHHHHHHHHHHHHHHHHHHhhCcCHHHHHHHhhhe-eCc
Confidence                    9999996      888886 7653         488999999999999997 6999999999999999 999


Q ss_pred             eEeeecCCCCeEEEEEeeccccc
Q 027881          161 RISGIVDSPNAVATLAVPTAIFD  183 (217)
Q Consensus       161 ~IsQvVd~p~~tv~~~iPk~if~  183 (217)
                      ||||||| |+++|++.|||++|.
T Consensus       262 ~I~qvVd-p~~~v~~~ipk~ift  283 (283)
T d2f4la1         262 GISQLVN-PAKTAKARIPKYIFT  283 (283)
T ss_dssp             EEEESSS-SSEEEEEEEEGGGTC
T ss_pred             eeeEEEC-CCeEEEEEEEHHHCC
Confidence            9999999 899999999999995