Citrus Sinensis ID: 027895


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------
MRLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALAQLRQQESN
ccccHHHHHHHHHccccccccccccHHHHHHcccccccHHHHHHHHHHHccccEEEEcccccccccccccccccccHHHHccccEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHcccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
ccccHHHHHHHHcccccEEEEcHccHHHHHHcccccHHHHHHHHHHHHHcccEEEEEcccccccccccccEcccHcHHHHHcccEEEEEccHHHHHcHHHHHHHHcccccccHHHHHHHHHHHHHcccccEEEEEccccHHHcccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
MRLSTEELERLAKLGSKAQKTARRDIAHVVAtrgngattVSATMFFASMVGIpvfvtggiggvhrhgehtmdissdltelgrtpvAVVSAGIKSildiprtleylvpcrvdspedcARLIDVNMKLklgsglvigvpiprehaasgRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALAQLRQQESN
MRLSTEELERLAKlgskaqktarrdIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALAQLRQQESN
MRLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALAQLRQQESN
************************DIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAI**********NITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALA********
MRLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVA***L******
********ERLAKLG********RDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALAQLRQQESN
*RLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALAQLRQQ***
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLVPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALAQLRQQESN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query217 2.2.26 [Sep-21-2011]
C0ZIY1308 Pseudouridine-5'-phosphat yes no 0.967 0.681 0.468 3e-50
Q7MZE1312 Pseudouridine-5'-phosphat yes no 0.958 0.666 0.482 3e-48
B1HV79304 Pseudouridine-5'-phosphat yes no 0.963 0.687 0.483 3e-48
Q8NYD0307 Pseudouridine-5'-phosphat yes no 0.944 0.667 0.474 5e-48
Q46PS3314 Pseudouridine-5'-phosphat yes no 0.898 0.621 0.5 1e-46
Q1M4T3309 Pseudouridine-5'-phosphat yes no 0.958 0.673 0.485 2e-46
Q8RCT3307 Pseudouridine-5'-phosphat yes no 0.972 0.687 0.462 2e-46
A7GCK7307 Pseudouridine-5'-phosphat yes no 0.972 0.687 0.430 2e-46
P33025312 Pseudouridine-5'-phosphat N/A no 0.935 0.650 0.467 9e-46
A9BJN0306 Pseudouridine-5'-phosphat yes no 0.930 0.660 0.436 1e-44
>sp|C0ZIY1|PSUG_BREBN Pseudouridine-5'-phosphate glycosidase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=psuG PE=3 SV=1 Back     alignment and function desciption
 Score =  197 bits (502), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 113/241 (46%), Positives = 146/241 (60%), Gaps = 31/241 (12%)

Query: 3   LSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGG 62
           L+  ELE  A       K +RRD A+++A+   GATTV+ATM  A M GI +F TGGIGG
Sbjct: 70  LTDSELEEFAT-NKNVAKVSRRDFAYILASGKIGATTVAATMIAAEMAGIHMFATGGIGG 128

Query: 63  VHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYL----------------- 105
           VHR GE T D+S+DLTEL +T VAVV AG KSILDI RTLEYL                 
Sbjct: 129 VHREGEITWDVSADLTELAQTDVAVVCAGAKSILDIGRTLEYLETQGVPVVGYRTDEFPS 188

Query: 106 ---------VPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSA 156
                    V  R+D+PE+  ++++    L L  G++I  P+P   A +   IE+ IQ A
Sbjct: 189 FFARKSGFGVDMRIDTPEEVGKMMNTKWDLGLKGGMIIANPVPESDALNHEEIEAVIQKA 248

Query: 157 LREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALAQLRQQES 216
           L EA+E NI G   TPF+L +V +LT G SLA+NIALVK+NA + AKI+VA     Q+E+
Sbjct: 249 LAEAKENNIAGKQVTPFMLDKVKKLTEGKSLATNIALVKHNAEVAAKIAVAY----QKEA 304

Query: 217 N 217
           N
Sbjct: 305 N 305




Catalyzes the hydrolysis of pseudouridine 5'-phosphate (PsiMP) to ribose 5-phosphate and uracil.
Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) (taxid: 358681)
EC: 3EC: .EC: 2EC: .EC: -EC: .EC: -
>sp|Q7MZE1|PSUG2_PHOLL Pseudouridine-5'-phosphate glycosidase 2 OS=Photorhabdus luminescens subsp. laumondii (strain TT01) GN=psuG2 PE=3 SV=1 Back     alignment and function description
>sp|B1HV79|PSUG_LYSSC Pseudouridine-5'-phosphate glycosidase OS=Lysinibacillus sphaericus (strain C3-41) GN=psuG PE=3 SV=1 Back     alignment and function description
>sp|Q8NYD0|PSUG_STAAW Pseudouridine-5'-phosphate glycosidase OS=Staphylococcus aureus (strain MW2) GN=psuG PE=3 SV=1 Back     alignment and function description
>sp|Q46PS3|PSUG_CUPPJ Pseudouridine-5'-phosphate glycosidase OS=Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) GN=psuG PE=3 SV=2 Back     alignment and function description
>sp|Q1M4T3|PSUG2_RHIL3 Pseudouridine-5'-phosphate glycosidase 2 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=psuG2 PE=3 SV=1 Back     alignment and function description
>sp|Q8RCT3|PSUG_THETN Pseudouridine-5'-phosphate glycosidase OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=psuG PE=3 SV=1 Back     alignment and function description
>sp|A7GCK7|PSUG_CLOBL Pseudouridine-5'-phosphate glycosidase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=psuG PE=3 SV=1 Back     alignment and function description
>sp|P33025|PSUG_ECOLI Pseudouridine-5'-phosphate glycosidase OS=Escherichia coli (strain K12) GN=psuG PE=1 SV=1 Back     alignment and function description
>sp|A9BJN0|PSUG_PETMO Pseudouridine-5'-phosphate glycosidase OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=psuG PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query217
255551325242 conserved hypothetical protein [Ricinus 0.958 0.859 0.773 2e-98
225435907 346 PREDICTED: pseudouridine-5'-phosphate gl 0.972 0.609 0.767 3e-97
224059266 350 predicted protein [Populus trichocarpa] 0.986 0.611 0.758 1e-96
356532275 485 PREDICTED: pseudouridine-5'-phosphate gl 0.976 0.437 0.722 2e-91
449476124242 PREDICTED: pseudouridine-5'-phosphate gl 0.976 0.876 0.718 1e-90
449442563 343 PREDICTED: pseudouridine-5'-phosphate gl 0.976 0.618 0.718 7e-90
357470285 350 Pseudouridine-5'-phosphate glycosidase [ 0.972 0.602 0.713 8e-89
297847396 330 indigoidine synthase A family protein [A 0.963 0.633 0.697 1e-87
30694792 330 indigoidine synthase A-like protein [Ara 0.963 0.633 0.685 7e-86
9454556 324 Unknown protein [Arabidopsis thaliana] 0.963 0.645 0.685 2e-85
>gi|255551325|ref|XP_002516709.1| conserved hypothetical protein [Ricinus communis] gi|223544204|gb|EEF45728.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  363 bits (933), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 181/234 (77%), Positives = 201/234 (85%), Gaps = 26/234 (11%)

Query: 6   EELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHR 65
           E+LERLA LG +A+KTARRDIA+VVATRGNGATTVSATM+FASMVGI VFVTGGIGGVHR
Sbjct: 2   EDLERLATLGPRAKKTARRDIAYVVATRGNGATTVSATMYFASMVGISVFVTGGIGGVHR 61

Query: 66  HGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYL-------------------- 105
           HGEHTMD+SSDLTELGRTPVAV+SAG+KSILDIPRTLEYL                    
Sbjct: 62  HGEHTMDVSSDLTELGRTPVAVISAGVKSILDIPRTLEYLETQGVCVATYQTNEFPAFFT 121

Query: 106 ------VPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALRE 159
                  PCRVDSPEDCARLID NMKLKLG+G++I VPIP+EH+ASG +IESAIQSALRE
Sbjct: 122 ETSGCKAPCRVDSPEDCARLIDANMKLKLGNGILIAVPIPKEHSASGNLIESAIQSALRE 181

Query: 160 AREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALAQLRQ 213
           AR+KNITGNAETPFLLARVNE+TGG+SLASNIALVKNNAL+GAKI+VALAQLR+
Sbjct: 182 ARDKNITGNAETPFLLARVNEVTGGVSLASNIALVKNNALLGAKIAVALAQLRE 235




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435907|ref|XP_002266954.1| PREDICTED: pseudouridine-5'-phosphate glycosidase [Vitis vinifera] gi|296083913|emb|CBI24301.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224059266|ref|XP_002299797.1| predicted protein [Populus trichocarpa] gi|222847055|gb|EEE84602.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356532275|ref|XP_003534699.1| PREDICTED: pseudouridine-5'-phosphate glycosidase-like [Glycine max] Back     alignment and taxonomy information
>gi|449476124|ref|XP_004154647.1| PREDICTED: pseudouridine-5'-phosphate glycosidase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449442563|ref|XP_004139051.1| PREDICTED: pseudouridine-5'-phosphate glycosidase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357470285|ref|XP_003605427.1| Pseudouridine-5'-phosphate glycosidase [Medicago truncatula] gi|355506482|gb|AES87624.1| Pseudouridine-5'-phosphate glycosidase [Medicago truncatula] Back     alignment and taxonomy information
>gi|297847396|ref|XP_002891579.1| indigoidine synthase A family protein [Arabidopsis lyrata subsp. lyrata] gi|297337421|gb|EFH67838.1| indigoidine synthase A family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30694792|ref|NP_564574.2| indigoidine synthase A-like protein [Arabidopsis thaliana] gi|27754328|gb|AAO22617.1| unknown protein [Arabidopsis thaliana] gi|28393889|gb|AAO42352.1| unknown protein [Arabidopsis thaliana] gi|332194438|gb|AEE32559.1| indigoidine synthase A-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|9454556|gb|AAF87879.1|AC012561_12 Unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query217
TAIR|locus:2008081330 AT1G50510 [Arabidopsis thalian 0.474 0.312 0.834 5.8e-80
FB|FBgn0031265 700 CG2794 [Drosophila melanogaste 0.474 0.147 0.634 1.2e-48
UNIPROTKB|P33025312 psuG [Escherichia coli K-12 (t 0.474 0.330 0.592 3.7e-46
CGD|CAL0006123307 orf19.6185 [Candida albicans ( 0.405 0.286 0.625 1.2e-41
UNIPROTKB|Q59MI6307 IND1 "Putative uncharacterized 0.405 0.286 0.625 1.2e-41
ZFIN|ZDB-GENE-060421-6632 700 zgc:136858 "zgc:136858" [Danio 0.470 0.145 0.640 1.1e-31
UNIPROTKB|F1P1N5 677 Gga.26687 "Uncharacterized pro 0.470 0.150 0.650 6.6e-28
UNIPROTKB|Q3AFY5304 psuG "Pseudouridine-5'-phospha 0.474 0.338 0.640 1.3e-27
TIGR_CMR|CHY_0077304 CHY_0077 "indigoidine systhesi 0.474 0.338 0.640 1.3e-27
POMBASE|SPBC1861.05 747 SPBC1861.05 "pseudouridine-met 0.456 0.132 0.646 2.8e-26
TAIR|locus:2008081 AT1G50510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 434 (157.8 bits), Expect = 5.8e-80, Sum P(2) = 5.8e-80
 Identities = 86/103 (83%), Positives = 93/103 (90%)

Query:     3 LSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGG 62
             LS EELERLA LG   QKTA RDIA+VVATRGNGATTVSAT+FFASMVGI VFVTGGIGG
Sbjct:    95 LSEEELERLASLGKSVQKTAGRDIANVVATRGNGATTVSATLFFASMVGIQVFVTGGIGG 154

Query:    63 VHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYL 105
             VHRH  H+MDISSDLT LGRTP+AV+SAG+KSILDIP+TLEYL
Sbjct:   155 VHRHANHSMDISSDLTALGRTPIAVISAGVKSILDIPKTLEYL 197


GO:0009507 "chloroplast" evidence=ISM
GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
GO:0005777 "peroxisome" evidence=IDA
FB|FBgn0031265 CG2794 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|P33025 psuG [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
CGD|CAL0006123 orf19.6185 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q59MI6 IND1 "Putative uncharacterized protein IND1" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060421-6632 zgc:136858 "zgc:136858" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1P1N5 Gga.26687 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q3AFY5 psuG "Pseudouridine-5'-phosphate glycosidase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0077 CHY_0077 "indigoidine systhesis protein, homolog" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
POMBASE|SPBC1861.05 SPBC1861.05 "pseudouridine-metabolizing bifunctional protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00017290001
SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (329 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00035982001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (378 aa)
     0.750
GSVIVG00036740001
SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (456 aa)
       0.587
GSVIVG00022056001
SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (174 aa)
       0.569
GSVIVG00034124001
RecName- Full=50S ribosomal protein L34; (147 aa)
       0.424

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query217
pfam04227293 pfam04227, Indigoidine_A, Indigoidine synthase A l 1e-111
COG2313310 COG2313, IndA, Uncharacterized enzyme involved in 4e-80
>gnl|CDD|217974 pfam04227, Indigoidine_A, Indigoidine synthase A like protein Back     alignment and domain information
 Score =  320 bits (824), Expect = e-111
 Identities = 125/232 (53%), Positives = 149/232 (64%), Gaps = 26/232 (11%)

Query: 3   LSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGG 62
           LS EELERLA+ G    K +RRD+ +V+AT   GATTV+ATM  A + GI VF TGGIGG
Sbjct: 62  LSDEELERLAQAGKDVAKVSRRDLPYVLATGKTGATTVAATMILAHLAGIKVFATGGIGG 121

Query: 63  VHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYL----------------- 105
           VHR  E + DIS+DLTEL RTPVAVV AG KSILDIP+TLEYL                 
Sbjct: 122 VHRGAEESFDISADLTELARTPVAVVCAGAKSILDIPKTLEYLETQGVPVIGYGTDEFPA 181

Query: 106 ---------VPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSA 156
                     P R+DS E+ A  I     L L  G+++  PIP E+A     IE+AI+ A
Sbjct: 182 FYSRDSGFKAPYRLDSAEEIAAAIRARWALGLQGGVLVANPIPEEYAIDREEIEAAIEQA 241

Query: 157 LREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVAL 208
           L EA E+ ITG A TPFLLAR+ ELTGG SL +NIALVKNNA + A+I+VAL
Sbjct: 242 LAEAEEQGITGKAVTPFLLARIAELTGGRSLKANIALVKNNARLAAEIAVAL 293


Indigoidine is a blue pigment synthesised by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown. The recommended name for this protein is now pseudouridine-5'-phosphate glycosidase. Length = 293

>gnl|CDD|225195 COG2313, IndA, Uncharacterized enzyme involved in pigment biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 217
PF04227293 Indigoidine_A: Indigoidine synthase A like protein 100.0
COG2313310 IndA Uncharacterized enzyme involved in pigment bi 100.0
KOG3009 614 consensus Predicted carbohydrate kinase, contains 100.0
>PF04227 Indigoidine_A: Indigoidine synthase A like protein; InterPro: IPR007342 Members of this entry catalyze the hydrolysis of pseudouridine 5'-phosphate (PsiMP) to ribose 5-phosphate and uracil Back     alignment and domain information
Probab=100.00  E-value=1.2e-89  Score=617.38  Aligned_cols=208  Identities=63%  Similarity=0.891  Sum_probs=157.7

Q ss_pred             CCCCHHHHHHHHhcCCCCccccccchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCcccccccccchhhh
Q 027895            1 MRLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTEL   80 (217)
Q Consensus         1 vGl~~~ele~la~~~~~~~K~SrRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGiGGVHrga~~t~DiSaDL~eL   80 (217)
                      |||+++||++|++.++++.|+|||||++++++|++||||||+||++||++||+||+||||||||||+++|||||+||+||
T Consensus        60 vGl~~~ele~la~~~~~~~K~s~RDl~~~~a~~~~GaTTVsaTm~lA~~aGI~VfaTGGiGGVHrga~~t~DiSaDL~eL  139 (293)
T PF04227_consen   60 VGLSEEELERLADAGKGVIKVSRRDLAYALAKGLSGATTVSATMILAHLAGIKVFATGGIGGVHRGAEETFDISADLTEL  139 (293)
T ss_dssp             ES--HHHHHHHHHH----EEE-GGGHHHHHHHT--EEE-HHHHHHHHHHTT--EEE-S-B--B-TT---SS-B-HHHHHH
T ss_pred             EcCCHHHHHHHHHhccCCeeecHhhHHHHHhCCCccHhHHHHHHHHHHHcCCCEEEeCCcccCCCCCcCcchhhhHHHHH
Confidence            79999999999997668999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEecccccccccccccccc--------------------------ccccCCCHHHHHHHHHHHHhcCCCCeEEE
Q 027895           81 GRTPVAVVSAGIKSILDIPRTLEYL--------------------------VPCRVDSPEDCARLIDVNMKLKLGSGLVI  134 (217)
Q Consensus        81 ~rtpV~VVcaG~KsILDi~~TlE~L--------------------------~~~~~d~~~e~A~~~~~~~~l~l~~g~lv  134 (217)
                      +||||+|||||+|||||||+|||||                          +|+++|+++|+|++++++|+|++++|+||
T Consensus       140 ~rtpv~VV~aG~KsILDi~~TLE~LET~GV~Vvgy~t~~fPaFy~~~Sg~~~~~~~d~~~e~A~~~~~~~~lgl~~g~lv  219 (293)
T PF04227_consen  140 ARTPVAVVCAGAKSILDIPKTLEYLETQGVPVVGYGTDEFPAFYTRSSGFKSPYRVDSPEEAARIIRAHWQLGLPSGVLV  219 (293)
T ss_dssp             TTS-EEEEESBB-TTS-HHHHHHHHHHTT--EEEES-SB--BTTBS--S-B---EE-SHHHHHHHHHHHHHTT--SEEEE
T ss_pred             hcCCceEEEccCcchhchHHHHHHhhcCCeEEEEecCCCCCeeeccCCCCCCCcccCCHHHHHHHHHHHHHhCCCCeEEE
Confidence            9999999999999999999999999                          89999999999999999999999999999


Q ss_pred             EeCCCcCCCCChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHH
Q 027895          135 GVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVAL  208 (217)
Q Consensus       135 anPiP~e~~~~~~~i~~~I~~Al~eA~~~gi~Gk~~TPflL~~i~e~T~G~Sl~aNiaLl~nNa~laa~IA~~~  208 (217)
                      +||||+|+++|+++|+++|++|++||+++||+||++|||||++|+|+|+|+|+++|++||+|||++|++||++|
T Consensus       220 anPiP~e~~~~~~~i~~~I~~Al~ea~~~gi~Gk~vTPfLL~~i~e~T~G~Sl~aNialv~nNa~~aa~IA~~l  293 (293)
T PF04227_consen  220 ANPIPEEDAIDGEEIESAIEQALAEAEEQGIRGKAVTPFLLARINELTGGKSLEANIALVKNNARLAAQIAVAL  293 (293)
T ss_dssp             E----GGG---HHHHHHHHHT-----------GGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EccCChHhcCCHHHHHHHHHHHHhhHhhcCCCcccCCHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999987



It is also reported to be involved in the synthesis of indigoidine, which is a blue pigment synthesised by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 1VKM_C.

>COG2313 IndA Uncharacterized enzyme involved in pigment biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query217
4gij_A335 Crystal Structure Of Pseudouridine Monophosphate Gl 7e-47
4gim_A335 Crystal Structure Of Pseudouridine Monophosphate Gl 4e-46
4ex8_A316 Crystal Structure Of The Prealnumycin C-glycosyntha 4e-20
1vkm_A297 Crystal Structure Of An Indigoidine Synthase A (Idg 2e-15
>pdb|4GIJ|A Chain A, Crystal Structure Of Pseudouridine Monophosphate Glycosidase Complexed With Sulfate Length = 335 Back     alignment and structure

Iteration: 1

Score = 183 bits (464), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 107/229 (46%), Positives = 132/229 (57%), Gaps = 26/229 (11%) Query: 3 LSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGG 62 LS EE+E L + G K +RRD+ VVA NGATTV++TM A++ GI VF TGGIGG Sbjct: 99 LSKEEIELLGREGHNVTKVSRRDLPFVVAAGKNGATTVASTMIIAALAGIKVFATGGIGG 158 Query: 63 VHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYL----------------- 105 VHR EHT DIS+DL EL T V VV AG KSILD+ T EYL Sbjct: 159 VHRGAEHTFDISADLQELANTNVTVVCAGAKSILDLGLTTEYLETFGVPLIGYQTKALPA 218 Query: 106 ---------VPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSA 156 V R+DS + AR + V + L GLV+ PIP + A I +AI A Sbjct: 219 FFCRTSPFDVSIRLDSASEIARAMVVKWQSGLNGGLVVANPIPEQFAMPEHTINAAIDQA 278 Query: 157 LREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKIS 205 + EA + + G TPFLLARV ELTGG SL SNI LV NNA++ ++I+ Sbjct: 279 VAEAEAQGVIGKESTPFLLARVAELTGGDSLKSNIQLVFNNAILASEIA 327
>pdb|4GIM|A Chain A, Crystal Structure Of Pseudouridine Monophosphate Glycosidase Complexed With Pseudouridine 5'-Phosphate Length = 335 Back     alignment and structure
>pdb|4EX8|A Chain A, Crystal Structure Of The Prealnumycin C-glycosynthase Alna Length = 316 Back     alignment and structure
>pdb|1VKM|A Chain A, Crystal Structure Of An Indigoidine Synthase A (Idga)-Like Protein (Tm1464) From Thermotoga Maritima Msb8 At 1.90 A Resolution Length = 297 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query217
1vkm_A297 Conserved hypothetical protein TM1464; indigoidine 5e-58
>1vkm_A Conserved hypothetical protein TM1464; indigoidine synthase A-like fold, structural genomics, joint for structural genomics, JCSG; HET: MSE UNL; 1.90A {Thermotoga maritima} SCOP: c.138.1.1 Length = 297 Back     alignment and structure
 Score =  184 bits (467), Expect = 5e-58
 Identities = 80/235 (34%), Positives = 122/235 (51%), Gaps = 35/235 (14%)

Query: 1   MRLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGI 60
             +S EELE + + G  A K   R+I  VVA   N ATTVSAT+F +  +GI V VTGG 
Sbjct: 72  AGMSEEELEAMMREG--ADKVGTREIPIVVAEGKNAATTVSATIFLSRRIGIEVVVTGGT 129

Query: 61  GGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYL--------------V 106
           GGVH      +D+S DLTE+  +   +VS+GIKSILD+  T E L               
Sbjct: 130 GGVHPG---RVDVSQDLTEMSSSRAVLVSSGIKSILDVEATFEMLETLEIPLVGFRTNEF 186

Query: 107 PC-----------RVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQS 155
           P            R+++ E+  ++ +   +++L   L++  P+P E+      IE  +  
Sbjct: 187 PLFFSRKSGRRVPRIENVEEVLKIYESMKEMELEKTLMVLNPVPEEYEIPHDEIERLL-- 244

Query: 156 ALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALAQ 210
              E  E  + G   TPFLL ++ E+T G +L +N+AL++ N  +  +I+V L +
Sbjct: 245 ---EKIELEVEGKEVTPFLLKKLVEMTNGRTLKANLALLEENVKLAGEIAVKLKR 296


Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query217
4gim_A335 Pseudouridine-5'-phosphate glycosidase; alpha-beta 100.0
4ex8_A316 ALNA; alpha/beta/alpha-domain, C-glycosynthase, di 100.0
1vkm_A297 Conserved hypothetical protein TM1464; indigoidine 100.0
>4gim_A Pseudouridine-5'-phosphate glycosidase; alpha-beta-alpha sandwich fold, hydrolase; HET: PSU; 1.80A {Escherichia coli} PDB: 4gij_A 4gik_A* 4gil_A* Back     alignment and structure
Probab=100.00  E-value=1.1e-92  Score=643.47  Aligned_cols=212  Identities=50%  Similarity=0.728  Sum_probs=208.2

Q ss_pred             CCCCHHHHHHHHhcCCCCccccccchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCcccccccccchhhh
Q 027895            1 MRLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTEL   80 (217)
Q Consensus         1 vGl~~~ele~la~~~~~~~K~SrRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGiGGVHrga~~t~DiSaDL~eL   80 (217)
                      |||+++|||+||+.++++.|+|||||++++++|++||||||+||++|++|||+||+||||||||||+++|||||+||+||
T Consensus        97 vGL~~~ele~la~~~~~v~K~SrRDl~~~~a~~~~GaTTVaaTm~lA~~AGI~VFaTGGIGGVHRgae~t~DISADL~eL  176 (335)
T 4gim_A           97 VGLSKEEIELLGREGHNVTKVSRRDLPFVVAAGKNGATTVASTMIIAALAGIKVFATGGIGGVHRGAEHTFDISADLQEL  176 (335)
T ss_dssp             ESCCHHHHHHHHHHGGGSEEECTTTHHHHHHTTCCEEECHHHHHHHHHHTTCCEEECSCCCCBBTTHHHHCCBCHHHHHH
T ss_pred             EcCCHHHHHHHHhcCCCceeeecccHHHHhhcCCCccccHHHHHHHHHHCCCcEEeeCCcCccCCCCCCCccccchHHHh
Confidence            79999999999976567999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEecccccccccccccccc--------------------------ccccCCCHHHHHHHHHHHHhcCCCCeEEE
Q 027895           81 GRTPVAVVSAGIKSILDIPRTLEYL--------------------------VPCRVDSPEDCARLIDVNMKLKLGSGLVI  134 (217)
Q Consensus        81 ~rtpV~VVcaG~KsILDi~~TlE~L--------------------------~~~~~d~~~e~A~~~~~~~~l~l~~g~lv  134 (217)
                      +||||+|||||+|||||||+|||||                          +|+|+|+++|+|++++++|++++++|+||
T Consensus       177 arTpV~VVcAG~KSILDi~~TLE~LET~GVpVvgy~td~fPaFy~r~Sg~~~~~rvd~~~e~A~i~~~~~~lgl~~g~lv  256 (335)
T 4gim_A          177 ANTNVTVVCAGAASILDLGLTTEYLETFGVPLIGYQTKALPAFFCRTSPFDVSIRLDSASEIARAMVVKWQSGLNGGLVV  256 (335)
T ss_dssp             HHSCCEEEECBCCTTBCHHHHHHHHHHTTCCEEEETCSBCCBTTBSCCSSBCSEEECCHHHHHHHHHHHHHTTCCSCEEE
T ss_pred             ccCCeEEEeecchhhccchhHHHHHHhcCceEEEecCCCCceeeccCCCCcCcceeCCHHHHHHHHHHHHHcCCCCceEE
Confidence            9999999999999999999999999                          88999999999999999999999999999


Q ss_pred             EeCCCcCCCCChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027895          135 GVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALAQLR  212 (217)
Q Consensus       135 anPiP~e~~~~~~~i~~~I~~Al~eA~~~gi~Gk~~TPflL~~i~e~T~G~Sl~aNiaLl~nNa~laa~IA~~~~~~~  212 (217)
                      +||||+|+++|+++|+++|++|++||+++||+||++|||||++|+|+|+|+|+++|++||+|||++|++||++|++|.
T Consensus       257 anPIP~e~~i~~~~i~~~I~~Al~eA~~~gI~Gk~vTPfLL~~i~elT~G~Sl~aNiaLv~nNA~laa~IA~~l~~L~  334 (335)
T 4gim_A          257 ANPIPEQFAMPEHTINAAIDQAVAEAEAQGVIGKESTPFLLARVAELTGGDSLKSNIQLVFNNAILASEIAKEYQRLA  334 (335)
T ss_dssp             ECCCCGGGCCCHHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             eCCCCchhcCCHHHHHHHHHHHHHHHHHcCCcCCccChHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999874



>4ex8_A ALNA; alpha/beta/alpha-domain, C-glycosynthase, divalent metal ION ligase; 2.10A {Streptomyces SP} PDB: 4ex9_A* Back     alignment and structure
>1vkm_A Conserved hypothetical protein TM1464; indigoidine synthase A-like fold, structural genomics, joint for structural genomics, JCSG; HET: MSE UNL; 1.90A {Thermotoga maritima} SCOP: c.138.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 217
d1vkma_292 c.138.1.1 (A:) Hypothetical protein TM1464 {Thermo 4e-68
>d1vkma_ c.138.1.1 (A:) Hypothetical protein TM1464 {Thermotoga maritima [TaxId: 2336]} Length = 292 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Indigoidine synthase A-like
superfamily: Indigoidine synthase A-like
family: Indigoidine synthase A-like
domain: Hypothetical protein TM1464
species: Thermotoga maritima [TaxId: 2336]
 Score =  208 bits (531), Expect = 4e-68
 Identities = 79/234 (33%), Positives = 121/234 (51%), Gaps = 35/234 (14%)

Query: 1   MRLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGI 60
             +S EELE + +    A K   R+I  VVA   N ATTVSAT+F +  +GI V VTGG 
Sbjct: 68  AGMSEEELEAMMR--EGADKVGTREIPIVVAEGKNAATTVSATIFLSRRIGIEVVVTGGT 125

Query: 61  GGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYL----VPC-------- 108
           GGVH      +D+S DLTE+  +   +VS+GIKSILD+  T E L    +P         
Sbjct: 126 GGVH---PGRVDVSQDLTEMSSSRAVLVSSGIKSILDVEATFEMLETLEIPLVGFRTNEF 182

Query: 109 -------------RVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQS 155
                        R+++ E+  ++ +   +++L   L++  P+P E+      IE  +  
Sbjct: 183 PLFFSRKSGRRVPRIENVEEVLKIYESMKEMELEKTLMVLNPVPEEYEIPHDEIERLL-- 240

Query: 156 ALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALA 209
              E  E  + G   TPFLL ++ E+T G +L +N+AL++ N  +  +I+V L 
Sbjct: 241 ---EKIELEVEGKEVTPFLLKKLVEMTNGRTLKANLALLEENVKLAGEIAVKLK 291


Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query217
d1vkma_292 Hypothetical protein TM1464 {Thermotoga maritima [ 100.0
>d1vkma_ c.138.1.1 (A:) Hypothetical protein TM1464 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Indigoidine synthase A-like
superfamily: Indigoidine synthase A-like
family: Indigoidine synthase A-like
domain: Hypothetical protein TM1464
species: Thermotoga maritima [TaxId: 2336]
Probab=100.00  E-value=2.4e-83  Score=573.20  Aligned_cols=199  Identities=40%  Similarity=0.621  Sum_probs=191.1

Q ss_pred             CCCCHHHHHHHHhcCCCCccccccchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCcccccccccchhhh
Q 027895            1 MRLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTEL   80 (217)
Q Consensus         1 vGl~~~ele~la~~~~~~~K~SrRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGiGGVHrga~~t~DiSaDL~eL   80 (217)
                      |||+++|||+|++.  ++.|+|||||++++++|.+||||||+||++|+++||+||+|||||||||+   +||||+||+||
T Consensus        68 vGl~~~ele~la~~--~~~K~s~rdl~~~~a~~~~gaTTVsaTm~iA~~aGI~VFaTGGIGGVHr~---s~DiSaDL~eL  142 (292)
T d1vkma_          68 AGMSEEELEAMMRE--GADKVGTREIPIVVAEGKNAATTVSATIFLSRRIGIEVVVTGGTGGVHPG---RVDVSQDLTEM  142 (292)
T ss_dssp             ESCCHHHHHHHHHH--CCEEECGGGHHHHHHHTCCEEECHHHHHHHHHHHTCCEEECSCBCCBCTT---SSCBCHHHHHH
T ss_pred             ecCCHHHHHHHhhc--cccccccccHHHHHhccccccccHHHHHHHHHhCCCeEEEecCcccccCC---CccccccHhhH
Confidence            69999999999974  68999999999999999999999999999999999999999999999995   89999999999


Q ss_pred             cCCCeEEEecccccccccccccccc--------------------------ccccCCCHHHHHHHHHHHHhcCCCCeEEE
Q 027895           81 GRTPVAVVSAGIKSILDIPRTLEYL--------------------------VPCRVDSPEDCARLIDVNMKLKLGSGLVI  134 (217)
Q Consensus        81 ~rtpV~VVcaG~KsILDi~~TlE~L--------------------------~~~~~d~~~e~A~~~~~~~~l~l~~g~lv  134 (217)
                      +||||+|||||+|||||||+|||||                          +| ++|+++|+|++++++|++++++|+||
T Consensus       143 ~~tpv~vVcaG~KsiLDi~~TlE~LET~gV~Vvgy~t~~fPaF~~~~Sg~~~~-~v~~~~eiA~i~~~~~~lgl~~giLv  221 (292)
T d1vkma_         143 SSSRAVLVSSGIKSILDVEATFEMLETLEIPLVGFRTNEFPLFFSRKSGRRVP-RIENVEEVLKIYESMKEMELEKTLMV  221 (292)
T ss_dssp             TTCCEEEEESBBCTTSCHHHHHHHHHHTTCCEEEESCSBCCBTTBSCCSCBCC-EECSHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             hcCCeEEEecccHhhcccHHHHHHHHhcCeeEEeecCCcccceeecCCCCCCC-CcCCHHHHHHHHHHHHHcCCCceEEE
Confidence            9999999999999999999999999                          77 49999999999999999999999999


Q ss_pred             EeCCCcCCCCChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 027895          135 GVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALAQ  210 (217)
Q Consensus       135 anPiP~e~~~~~~~i~~~I~~Al~eA~~~gi~Gk~~TPflL~~i~e~T~G~Sl~aNiaLl~nNa~laa~IA~~~~~  210 (217)
                      +||||+++++|.++||++|+++     ++||+||++|||||++|+|+|+|+|+++|++|++|||++|++||++|++
T Consensus       222 anPIP~e~~i~~~~ie~~i~~a-----~~~I~GK~vTPFLL~~I~e~T~G~SL~aNiaLi~nNA~lAa~IA~~l~k  292 (292)
T d1vkma_         222 LNPVPEEYEIPHDEIERLLEKI-----ELEVEGKEVTPFLLKKLVEMTNGRTLKANLALLEENVKLAGEIAVKLKR  292 (292)
T ss_dssp             ECCCCGGGCCCHHHHHHHHHTC-----CCCCCGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             ECCCCchhhCCHHHHHHHHHHH-----HhCCcCcccCHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999887654     7899999999999999999999999999999999999999999999864