Citrus Sinensis ID: 027895
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 217 | ||||||
| 255551325 | 242 | conserved hypothetical protein [Ricinus | 0.958 | 0.859 | 0.773 | 2e-98 | |
| 225435907 | 346 | PREDICTED: pseudouridine-5'-phosphate gl | 0.972 | 0.609 | 0.767 | 3e-97 | |
| 224059266 | 350 | predicted protein [Populus trichocarpa] | 0.986 | 0.611 | 0.758 | 1e-96 | |
| 356532275 | 485 | PREDICTED: pseudouridine-5'-phosphate gl | 0.976 | 0.437 | 0.722 | 2e-91 | |
| 449476124 | 242 | PREDICTED: pseudouridine-5'-phosphate gl | 0.976 | 0.876 | 0.718 | 1e-90 | |
| 449442563 | 343 | PREDICTED: pseudouridine-5'-phosphate gl | 0.976 | 0.618 | 0.718 | 7e-90 | |
| 357470285 | 350 | Pseudouridine-5'-phosphate glycosidase [ | 0.972 | 0.602 | 0.713 | 8e-89 | |
| 297847396 | 330 | indigoidine synthase A family protein [A | 0.963 | 0.633 | 0.697 | 1e-87 | |
| 30694792 | 330 | indigoidine synthase A-like protein [Ara | 0.963 | 0.633 | 0.685 | 7e-86 | |
| 9454556 | 324 | Unknown protein [Arabidopsis thaliana] | 0.963 | 0.645 | 0.685 | 2e-85 |
| >gi|255551325|ref|XP_002516709.1| conserved hypothetical protein [Ricinus communis] gi|223544204|gb|EEF45728.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 363 bits (933), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 181/234 (77%), Positives = 201/234 (85%), Gaps = 26/234 (11%)
Query: 6 EELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHR 65
E+LERLA LG +A+KTARRDIA+VVATRGNGATTVSATM+FASMVGI VFVTGGIGGVHR
Sbjct: 2 EDLERLATLGPRAKKTARRDIAYVVATRGNGATTVSATMYFASMVGISVFVTGGIGGVHR 61
Query: 66 HGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYL-------------------- 105
HGEHTMD+SSDLTELGRTPVAV+SAG+KSILDIPRTLEYL
Sbjct: 62 HGEHTMDVSSDLTELGRTPVAVISAGVKSILDIPRTLEYLETQGVCVATYQTNEFPAFFT 121
Query: 106 ------VPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSALRE 159
PCRVDSPEDCARLID NMKLKLG+G++I VPIP+EH+ASG +IESAIQSALRE
Sbjct: 122 ETSGCKAPCRVDSPEDCARLIDANMKLKLGNGILIAVPIPKEHSASGNLIESAIQSALRE 181
Query: 160 AREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALAQLRQ 213
AR+KNITGNAETPFLLARVNE+TGG+SLASNIALVKNNAL+GAKI+VALAQLR+
Sbjct: 182 ARDKNITGNAETPFLLARVNEVTGGVSLASNIALVKNNALLGAKIAVALAQLRE 235
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225435907|ref|XP_002266954.1| PREDICTED: pseudouridine-5'-phosphate glycosidase [Vitis vinifera] gi|296083913|emb|CBI24301.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|224059266|ref|XP_002299797.1| predicted protein [Populus trichocarpa] gi|222847055|gb|EEE84602.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|356532275|ref|XP_003534699.1| PREDICTED: pseudouridine-5'-phosphate glycosidase-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449476124|ref|XP_004154647.1| PREDICTED: pseudouridine-5'-phosphate glycosidase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|449442563|ref|XP_004139051.1| PREDICTED: pseudouridine-5'-phosphate glycosidase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|357470285|ref|XP_003605427.1| Pseudouridine-5'-phosphate glycosidase [Medicago truncatula] gi|355506482|gb|AES87624.1| Pseudouridine-5'-phosphate glycosidase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|297847396|ref|XP_002891579.1| indigoidine synthase A family protein [Arabidopsis lyrata subsp. lyrata] gi|297337421|gb|EFH67838.1| indigoidine synthase A family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|30694792|ref|NP_564574.2| indigoidine synthase A-like protein [Arabidopsis thaliana] gi|27754328|gb|AAO22617.1| unknown protein [Arabidopsis thaliana] gi|28393889|gb|AAO42352.1| unknown protein [Arabidopsis thaliana] gi|332194438|gb|AEE32559.1| indigoidine synthase A-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|9454556|gb|AAF87879.1|AC012561_12 Unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 217 | ||||||
| TAIR|locus:2008081 | 330 | AT1G50510 [Arabidopsis thalian | 0.474 | 0.312 | 0.834 | 5.8e-80 | |
| FB|FBgn0031265 | 700 | CG2794 [Drosophila melanogaste | 0.474 | 0.147 | 0.634 | 1.2e-48 | |
| UNIPROTKB|P33025 | 312 | psuG [Escherichia coli K-12 (t | 0.474 | 0.330 | 0.592 | 3.7e-46 | |
| CGD|CAL0006123 | 307 | orf19.6185 [Candida albicans ( | 0.405 | 0.286 | 0.625 | 1.2e-41 | |
| UNIPROTKB|Q59MI6 | 307 | IND1 "Putative uncharacterized | 0.405 | 0.286 | 0.625 | 1.2e-41 | |
| ZFIN|ZDB-GENE-060421-6632 | 700 | zgc:136858 "zgc:136858" [Danio | 0.470 | 0.145 | 0.640 | 1.1e-31 | |
| UNIPROTKB|F1P1N5 | 677 | Gga.26687 "Uncharacterized pro | 0.470 | 0.150 | 0.650 | 6.6e-28 | |
| UNIPROTKB|Q3AFY5 | 304 | psuG "Pseudouridine-5'-phospha | 0.474 | 0.338 | 0.640 | 1.3e-27 | |
| TIGR_CMR|CHY_0077 | 304 | CHY_0077 "indigoidine systhesi | 0.474 | 0.338 | 0.640 | 1.3e-27 | |
| POMBASE|SPBC1861.05 | 747 | SPBC1861.05 "pseudouridine-met | 0.456 | 0.132 | 0.646 | 2.8e-26 |
| TAIR|locus:2008081 AT1G50510 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 434 (157.8 bits), Expect = 5.8e-80, Sum P(2) = 5.8e-80
Identities = 86/103 (83%), Positives = 93/103 (90%)
Query: 3 LSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGG 62
LS EELERLA LG QKTA RDIA+VVATRGNGATTVSAT+FFASMVGI VFVTGGIGG
Sbjct: 95 LSEEELERLASLGKSVQKTAGRDIANVVATRGNGATTVSATLFFASMVGIQVFVTGGIGG 154
Query: 63 VHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYL 105
VHRH H+MDISSDLT LGRTP+AV+SAG+KSILDIP+TLEYL
Sbjct: 155 VHRHANHSMDISSDLTALGRTPIAVISAGVKSILDIPKTLEYL 197
|
|
| FB|FBgn0031265 CG2794 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P33025 psuG [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
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| CGD|CAL0006123 orf19.6185 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q59MI6 IND1 "Putative uncharacterized protein IND1" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-060421-6632 zgc:136858 "zgc:136858" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1P1N5 Gga.26687 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q3AFY5 psuG "Pseudouridine-5'-phosphate glycosidase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
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| TIGR_CMR|CHY_0077 CHY_0077 "indigoidine systhesis protein, homolog" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
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| POMBASE|SPBC1861.05 SPBC1861.05 "pseudouridine-metabolizing bifunctional protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00017290001 | SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (329 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
| GSVIVG00035982001 | • | • | • | 0.750 | |||||||
| GSVIVG00036740001 | • | 0.587 | |||||||||
| GSVIVG00022056001 | • | 0.569 | |||||||||
| GSVIVG00034124001 | • | 0.424 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 217 | |||
| pfam04227 | 293 | pfam04227, Indigoidine_A, Indigoidine synthase A l | 1e-111 | |
| COG2313 | 310 | COG2313, IndA, Uncharacterized enzyme involved in | 4e-80 |
| >gnl|CDD|217974 pfam04227, Indigoidine_A, Indigoidine synthase A like protein | Back alignment and domain information |
|---|
Score = 320 bits (824), Expect = e-111
Identities = 125/232 (53%), Positives = 149/232 (64%), Gaps = 26/232 (11%)
Query: 3 LSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGG 62
LS EELERLA+ G K +RRD+ +V+AT GATTV+ATM A + GI VF TGGIGG
Sbjct: 62 LSDEELERLAQAGKDVAKVSRRDLPYVLATGKTGATTVAATMILAHLAGIKVFATGGIGG 121
Query: 63 VHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYL----------------- 105
VHR E + DIS+DLTEL RTPVAVV AG KSILDIP+TLEYL
Sbjct: 122 VHRGAEESFDISADLTELARTPVAVVCAGAKSILDIPKTLEYLETQGVPVIGYGTDEFPA 181
Query: 106 ---------VPCRVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQSA 156
P R+DS E+ A I L L G+++ PIP E+A IE+AI+ A
Sbjct: 182 FYSRDSGFKAPYRLDSAEEIAAAIRARWALGLQGGVLVANPIPEEYAIDREEIEAAIEQA 241
Query: 157 LREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVAL 208
L EA E+ ITG A TPFLLAR+ ELTGG SL +NIALVKNNA + A+I+VAL
Sbjct: 242 LAEAEEQGITGKAVTPFLLARIAELTGGRSLKANIALVKNNARLAAEIAVAL 293
|
Indigoidine is a blue pigment synthesised by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown. The recommended name for this protein is now pseudouridine-5'-phosphate glycosidase. Length = 293 |
| >gnl|CDD|225195 COG2313, IndA, Uncharacterized enzyme involved in pigment biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 217 | |||
| PF04227 | 293 | Indigoidine_A: Indigoidine synthase A like protein | 100.0 | |
| COG2313 | 310 | IndA Uncharacterized enzyme involved in pigment bi | 100.0 | |
| KOG3009 | 614 | consensus Predicted carbohydrate kinase, contains | 100.0 |
| >PF04227 Indigoidine_A: Indigoidine synthase A like protein; InterPro: IPR007342 Members of this entry catalyze the hydrolysis of pseudouridine 5'-phosphate (PsiMP) to ribose 5-phosphate and uracil | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-89 Score=617.38 Aligned_cols=208 Identities=63% Similarity=0.891 Sum_probs=157.7
Q ss_pred CCCCHHHHHHHHhcCCCCccccccchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCcccccccccchhhh
Q 027895 1 MRLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTEL 80 (217)
Q Consensus 1 vGl~~~ele~la~~~~~~~K~SrRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGiGGVHrga~~t~DiSaDL~eL 80 (217)
|||+++||++|++.++++.|+|||||++++++|++||||||+||++||++||+||+||||||||||+++|||||+||+||
T Consensus 60 vGl~~~ele~la~~~~~~~K~s~RDl~~~~a~~~~GaTTVsaTm~lA~~aGI~VfaTGGiGGVHrga~~t~DiSaDL~eL 139 (293)
T PF04227_consen 60 VGLSEEELERLADAGKGVIKVSRRDLAYALAKGLSGATTVSATMILAHLAGIKVFATGGIGGVHRGAEETFDISADLTEL 139 (293)
T ss_dssp ES--HHHHHHHHHH----EEE-GGGHHHHHHHT--EEE-HHHHHHHHHHTT--EEE-S-B--B-TT---SS-B-HHHHHH
T ss_pred EcCCHHHHHHHHHhccCCeeecHhhHHHHHhCCCccHhHHHHHHHHHHHcCCCEEEeCCcccCCCCCcCcchhhhHHHHH
Confidence 79999999999997668999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEecccccccccccccccc--------------------------ccccCCCHHHHHHHHHHHHhcCCCCeEEE
Q 027895 81 GRTPVAVVSAGIKSILDIPRTLEYL--------------------------VPCRVDSPEDCARLIDVNMKLKLGSGLVI 134 (217)
Q Consensus 81 ~rtpV~VVcaG~KsILDi~~TlE~L--------------------------~~~~~d~~~e~A~~~~~~~~l~l~~g~lv 134 (217)
+||||+|||||+|||||||+||||| +|+++|+++|+|++++++|+|++++|+||
T Consensus 140 ~rtpv~VV~aG~KsILDi~~TLE~LET~GV~Vvgy~t~~fPaFy~~~Sg~~~~~~~d~~~e~A~~~~~~~~lgl~~g~lv 219 (293)
T PF04227_consen 140 ARTPVAVVCAGAKSILDIPKTLEYLETQGVPVVGYGTDEFPAFYTRSSGFKSPYRVDSPEEAARIIRAHWQLGLPSGVLV 219 (293)
T ss_dssp TTS-EEEEESBB-TTS-HHHHHHHHHHTT--EEEES-SB--BTTBS--S-B---EE-SHHHHHHHHHHHHHTT--SEEEE
T ss_pred hcCCceEEEccCcchhchHHHHHHhhcCCeEEEEecCCCCCeeeccCCCCCCCcccCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 9999999999999999999999999 89999999999999999999999999999
Q ss_pred EeCCCcCCCCChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHH
Q 027895 135 GVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVAL 208 (217)
Q Consensus 135 anPiP~e~~~~~~~i~~~I~~Al~eA~~~gi~Gk~~TPflL~~i~e~T~G~Sl~aNiaLl~nNa~laa~IA~~~ 208 (217)
+||||+|+++|+++|+++|++|++||+++||+||++|||||++|+|+|+|+|+++|++||+|||++|++||++|
T Consensus 220 anPiP~e~~~~~~~i~~~I~~Al~ea~~~gi~Gk~vTPfLL~~i~e~T~G~Sl~aNialv~nNa~~aa~IA~~l 293 (293)
T PF04227_consen 220 ANPIPEEDAIDGEEIESAIEQALAEAEEQGIRGKAVTPFLLARINELTGGKSLEANIALVKNNARLAAQIAVAL 293 (293)
T ss_dssp E----GGG---HHHHHHHHHT-----------GGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EccCChHhcCCHHHHHHHHHHHHhhHhhcCCCcccCCHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987
|
It is also reported to be involved in the synthesis of indigoidine, which is a blue pigment synthesised by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 1VKM_C. |
| >COG2313 IndA Uncharacterized enzyme involved in pigment biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
| >KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 217 | ||||
| 4gij_A | 335 | Crystal Structure Of Pseudouridine Monophosphate Gl | 7e-47 | ||
| 4gim_A | 335 | Crystal Structure Of Pseudouridine Monophosphate Gl | 4e-46 | ||
| 4ex8_A | 316 | Crystal Structure Of The Prealnumycin C-glycosyntha | 4e-20 | ||
| 1vkm_A | 297 | Crystal Structure Of An Indigoidine Synthase A (Idg | 2e-15 |
| >pdb|4GIJ|A Chain A, Crystal Structure Of Pseudouridine Monophosphate Glycosidase Complexed With Sulfate Length = 335 | Back alignment and structure |
|
| >pdb|4GIM|A Chain A, Crystal Structure Of Pseudouridine Monophosphate Glycosidase Complexed With Pseudouridine 5'-Phosphate Length = 335 | Back alignment and structure |
| >pdb|4EX8|A Chain A, Crystal Structure Of The Prealnumycin C-glycosynthase Alna Length = 316 | Back alignment and structure |
| >pdb|1VKM|A Chain A, Crystal Structure Of An Indigoidine Synthase A (Idga)-Like Protein (Tm1464) From Thermotoga Maritima Msb8 At 1.90 A Resolution Length = 297 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 217 | |||
| 1vkm_A | 297 | Conserved hypothetical protein TM1464; indigoidine | 5e-58 |
| >1vkm_A Conserved hypothetical protein TM1464; indigoidine synthase A-like fold, structural genomics, joint for structural genomics, JCSG; HET: MSE UNL; 1.90A {Thermotoga maritima} SCOP: c.138.1.1 Length = 297 | Back alignment and structure |
|---|
Score = 184 bits (467), Expect = 5e-58
Identities = 80/235 (34%), Positives = 122/235 (51%), Gaps = 35/235 (14%)
Query: 1 MRLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGI 60
+S EELE + + G A K R+I VVA N ATTVSAT+F + +GI V VTGG
Sbjct: 72 AGMSEEELEAMMREG--ADKVGTREIPIVVAEGKNAATTVSATIFLSRRIGIEVVVTGGT 129
Query: 61 GGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYL--------------V 106
GGVH +D+S DLTE+ + +VS+GIKSILD+ T E L
Sbjct: 130 GGVHPG---RVDVSQDLTEMSSSRAVLVSSGIKSILDVEATFEMLETLEIPLVGFRTNEF 186
Query: 107 PC-----------RVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQS 155
P R+++ E+ ++ + +++L L++ P+P E+ IE +
Sbjct: 187 PLFFSRKSGRRVPRIENVEEVLKIYESMKEMELEKTLMVLNPVPEEYEIPHDEIERLL-- 244
Query: 156 ALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALAQ 210
E E + G TPFLL ++ E+T G +L +N+AL++ N + +I+V L +
Sbjct: 245 ---EKIELEVEGKEVTPFLLKKLVEMTNGRTLKANLALLEENVKLAGEIAVKLKR 296
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 217 | |||
| 4gim_A | 335 | Pseudouridine-5'-phosphate glycosidase; alpha-beta | 100.0 | |
| 4ex8_A | 316 | ALNA; alpha/beta/alpha-domain, C-glycosynthase, di | 100.0 | |
| 1vkm_A | 297 | Conserved hypothetical protein TM1464; indigoidine | 100.0 |
| >4gim_A Pseudouridine-5'-phosphate glycosidase; alpha-beta-alpha sandwich fold, hydrolase; HET: PSU; 1.80A {Escherichia coli} PDB: 4gij_A 4gik_A* 4gil_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-92 Score=643.47 Aligned_cols=212 Identities=50% Similarity=0.728 Sum_probs=208.2
Q ss_pred CCCCHHHHHHHHhcCCCCccccccchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCcccccccccchhhh
Q 027895 1 MRLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTEL 80 (217)
Q Consensus 1 vGl~~~ele~la~~~~~~~K~SrRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGiGGVHrga~~t~DiSaDL~eL 80 (217)
|||+++|||+||+.++++.|+|||||++++++|++||||||+||++|++|||+||+||||||||||+++|||||+||+||
T Consensus 97 vGL~~~ele~la~~~~~v~K~SrRDl~~~~a~~~~GaTTVaaTm~lA~~AGI~VFaTGGIGGVHRgae~t~DISADL~eL 176 (335)
T 4gim_A 97 VGLSKEEIELLGREGHNVTKVSRRDLPFVVAAGKNGATTVASTMIIAALAGIKVFATGGIGGVHRGAEHTFDISADLQEL 176 (335)
T ss_dssp ESCCHHHHHHHHHHGGGSEEECTTTHHHHHHTTCCEEECHHHHHHHHHHTTCCEEECSCCCCBBTTHHHHCCBCHHHHHH
T ss_pred EcCCHHHHHHHHhcCCCceeeecccHHHHhhcCCCccccHHHHHHHHHHCCCcEEeeCCcCccCCCCCCCccccchHHHh
Confidence 79999999999976567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEecccccccccccccccc--------------------------ccccCCCHHHHHHHHHHHHhcCCCCeEEE
Q 027895 81 GRTPVAVVSAGIKSILDIPRTLEYL--------------------------VPCRVDSPEDCARLIDVNMKLKLGSGLVI 134 (217)
Q Consensus 81 ~rtpV~VVcaG~KsILDi~~TlE~L--------------------------~~~~~d~~~e~A~~~~~~~~l~l~~g~lv 134 (217)
+||||+|||||+|||||||+||||| +|+|+|+++|+|++++++|++++++|+||
T Consensus 177 arTpV~VVcAG~KSILDi~~TLE~LET~GVpVvgy~td~fPaFy~r~Sg~~~~~rvd~~~e~A~i~~~~~~lgl~~g~lv 256 (335)
T 4gim_A 177 ANTNVTVVCAGAASILDLGLTTEYLETFGVPLIGYQTKALPAFFCRTSPFDVSIRLDSASEIARAMVVKWQSGLNGGLVV 256 (335)
T ss_dssp HHSCCEEEECBCCTTBCHHHHHHHHHHTTCCEEEETCSBCCBTTBSCCSSBCSEEECCHHHHHHHHHHHHHTTCCSCEEE
T ss_pred ccCCeEEEeecchhhccchhHHHHHHhcCceEEEecCCCCceeeccCCCCcCcceeCCHHHHHHHHHHHHHcCCCCceEE
Confidence 9999999999999999999999999 88999999999999999999999999999
Q ss_pred EeCCCcCCCCChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027895 135 GVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALAQLR 212 (217)
Q Consensus 135 anPiP~e~~~~~~~i~~~I~~Al~eA~~~gi~Gk~~TPflL~~i~e~T~G~Sl~aNiaLl~nNa~laa~IA~~~~~~~ 212 (217)
+||||+|+++|+++|+++|++|++||+++||+||++|||||++|+|+|+|+|+++|++||+|||++|++||++|++|.
T Consensus 257 anPIP~e~~i~~~~i~~~I~~Al~eA~~~gI~Gk~vTPfLL~~i~elT~G~Sl~aNiaLv~nNA~laa~IA~~l~~L~ 334 (335)
T 4gim_A 257 ANPIPEQFAMPEHTINAAIDQAVAEAEAQGVIGKESTPFLLARVAELTGGDSLKSNIQLVFNNAILASEIAKEYQRLA 334 (335)
T ss_dssp ECCCCGGGCCCHHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eCCCCchhcCCHHHHHHHHHHHHHHHHHcCCcCCccChHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999874
|
| >4ex8_A ALNA; alpha/beta/alpha-domain, C-glycosynthase, divalent metal ION ligase; 2.10A {Streptomyces SP} PDB: 4ex9_A* | Back alignment and structure |
|---|
| >1vkm_A Conserved hypothetical protein TM1464; indigoidine synthase A-like fold, structural genomics, joint for structural genomics, JCSG; HET: MSE UNL; 1.90A {Thermotoga maritima} SCOP: c.138.1.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 217 | ||||
| d1vkma_ | 292 | c.138.1.1 (A:) Hypothetical protein TM1464 {Thermo | 4e-68 |
| >d1vkma_ c.138.1.1 (A:) Hypothetical protein TM1464 {Thermotoga maritima [TaxId: 2336]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Indigoidine synthase A-like superfamily: Indigoidine synthase A-like family: Indigoidine synthase A-like domain: Hypothetical protein TM1464 species: Thermotoga maritima [TaxId: 2336]
Score = 208 bits (531), Expect = 4e-68
Identities = 79/234 (33%), Positives = 121/234 (51%), Gaps = 35/234 (14%)
Query: 1 MRLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGI 60
+S EELE + + A K R+I VVA N ATTVSAT+F + +GI V VTGG
Sbjct: 68 AGMSEEELEAMMR--EGADKVGTREIPIVVAEGKNAATTVSATIFLSRRIGIEVVVTGGT 125
Query: 61 GGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYL----VPC-------- 108
GGVH +D+S DLTE+ + +VS+GIKSILD+ T E L +P
Sbjct: 126 GGVH---PGRVDVSQDLTEMSSSRAVLVSSGIKSILDVEATFEMLETLEIPLVGFRTNEF 182
Query: 109 -------------RVDSPEDCARLIDVNMKLKLGSGLVIGVPIPREHAASGRVIESAIQS 155
R+++ E+ ++ + +++L L++ P+P E+ IE +
Sbjct: 183 PLFFSRKSGRRVPRIENVEEVLKIYESMKEMELEKTLMVLNPVPEEYEIPHDEIERLL-- 240
Query: 156 ALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALA 209
E E + G TPFLL ++ E+T G +L +N+AL++ N + +I+V L
Sbjct: 241 ---EKIELEVEGKEVTPFLLKKLVEMTNGRTLKANLALLEENVKLAGEIAVKLK 291
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 217 | |||
| d1vkma_ | 292 | Hypothetical protein TM1464 {Thermotoga maritima [ | 100.0 |
| >d1vkma_ c.138.1.1 (A:) Hypothetical protein TM1464 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Indigoidine synthase A-like superfamily: Indigoidine synthase A-like family: Indigoidine synthase A-like domain: Hypothetical protein TM1464 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.4e-83 Score=573.20 Aligned_cols=199 Identities=40% Similarity=0.621 Sum_probs=191.1
Q ss_pred CCCCHHHHHHHHhcCCCCccccccchHHHHhcCCCchhhHHHHHHHHHHCCCcEEEecccccccCCcccccccccchhhh
Q 027895 1 MRLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTEL 80 (217)
Q Consensus 1 vGl~~~ele~la~~~~~~~K~SrRDl~~~~a~~~~GaTTVaaTm~lA~~aGI~VFaTGGiGGVHrga~~t~DiSaDL~eL 80 (217)
|||+++|||+|++. ++.|+|||||++++++|.+||||||+||++|+++||+||+|||||||||+ +||||+||+||
T Consensus 68 vGl~~~ele~la~~--~~~K~s~rdl~~~~a~~~~gaTTVsaTm~iA~~aGI~VFaTGGIGGVHr~---s~DiSaDL~eL 142 (292)
T d1vkma_ 68 AGMSEEELEAMMRE--GADKVGTREIPIVVAEGKNAATTVSATIFLSRRIGIEVVVTGGTGGVHPG---RVDVSQDLTEM 142 (292)
T ss_dssp ESCCHHHHHHHHHH--CCEEECGGGHHHHHHHTCCEEECHHHHHHHHHHHTCCEEECSCBCCBCTT---SSCBCHHHHHH
T ss_pred ecCCHHHHHHHhhc--cccccccccHHHHHhccccccccHHHHHHHHHhCCCeEEEecCcccccCC---CccccccHhhH
Confidence 69999999999974 68999999999999999999999999999999999999999999999995 89999999999
Q ss_pred cCCCeEEEecccccccccccccccc--------------------------ccccCCCHHHHHHHHHHHHhcCCCCeEEE
Q 027895 81 GRTPVAVVSAGIKSILDIPRTLEYL--------------------------VPCRVDSPEDCARLIDVNMKLKLGSGLVI 134 (217)
Q Consensus 81 ~rtpV~VVcaG~KsILDi~~TlE~L--------------------------~~~~~d~~~e~A~~~~~~~~l~l~~g~lv 134 (217)
+||||+|||||+|||||||+||||| +| ++|+++|+|++++++|++++++|+||
T Consensus 143 ~~tpv~vVcaG~KsiLDi~~TlE~LET~gV~Vvgy~t~~fPaF~~~~Sg~~~~-~v~~~~eiA~i~~~~~~lgl~~giLv 221 (292)
T d1vkma_ 143 SSSRAVLVSSGIKSILDVEATFEMLETLEIPLVGFRTNEFPLFFSRKSGRRVP-RIENVEEVLKIYESMKEMELEKTLMV 221 (292)
T ss_dssp TTCCEEEEESBBCTTSCHHHHHHHHHHTTCCEEEESCSBCCBTTBSCCSCBCC-EECSHHHHHHHHHHHHHTTCCSEEEE
T ss_pred hcCCeEEEecccHhhcccHHHHHHHHhcCeeEEeecCCcccceeecCCCCCCC-CcCCHHHHHHHHHHHHHcCCCceEEE
Confidence 9999999999999999999999999 77 49999999999999999999999999
Q ss_pred EeCCCcCCCCChHHHHHHHHHHHHHHHHcCCCCccCChHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 027895 135 GVPIPREHAASGRVIESAIQSALREAREKNITGNAETPFLLARVNELTGGLSLASNIALVKNNALIGAKISVALAQ 210 (217)
Q Consensus 135 anPiP~e~~~~~~~i~~~I~~Al~eA~~~gi~Gk~~TPflL~~i~e~T~G~Sl~aNiaLl~nNa~laa~IA~~~~~ 210 (217)
+||||+++++|.++||++|+++ ++||+||++|||||++|+|+|+|+|+++|++|++|||++|++||++|++
T Consensus 222 anPIP~e~~i~~~~ie~~i~~a-----~~~I~GK~vTPFLL~~I~e~T~G~SL~aNiaLi~nNA~lAa~IA~~l~k 292 (292)
T d1vkma_ 222 LNPVPEEYEIPHDEIERLLEKI-----ELEVEGKEVTPFLLKKLVEMTNGRTLKANLALLEENVKLAGEIAVKLKR 292 (292)
T ss_dssp ECCCCGGGCCCHHHHHHHHHTC-----CCCCCGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ECCCCchhhCCHHHHHHHHHHH-----HhCCcCcccCHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999887654 7899999999999999999999999999999999999999999999864
|