Citrus Sinensis ID: 027898

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------
Protein Sequence
MIQLLYTVIFSQMALIMTLLFKTPLRKLVIMSLDRVKRGRGPVVVKTVGGTLFIVLMSSVYSILKIQQRTLETGALNPTDQILMSKHMLEASLMGFLLFLSLMMDRLHHYIRELRLLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLESIDHSDSKKDM
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
MIQLLYTVIFSQMALIMTLLFKTPLRKLVIMSLdrvkrgrgpvvVKTVGGTLFIVLMSSVYSILKIQQRTletgalnptdqiLMSKHMLEASLMGFLLFLSLMMDRLHHYIRELRLLRKAMEAAKKQTrsfedgkndnvderkglgdDIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQlesidhsdskkdm
Flexible Loop (DISEMBL)
MIQLLYTVIFSQMALIMTLLFKTPLRKLVIMsldrvkrgrgpvvvkTVGGTLFIVLMSSVYSILKIQQRTLETGALNPTDQILMSKHMLEASLMGFLLFLSLMMDRLHHYIRELRLLRKAMEAAKkqtrsfedgkndnvderkglgddiatLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLrnqlesidhsdskkdm
Low Complexity Region (SEG)
MIQLLYTVIFSQMALIMTLLFKTPLRKLVIMSLDrvkrgrgpvvvktvggtLFIVLMSSVYSILKIQQRTLETGALNPTDQILMSKHMLEAslmgfllflslmmDRLHHYIRELRLLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECemkdkeanaakaeaealkkqseGFLLEYDRLLADNQHLRNQLESIDHSDSKKDM
Disordered region (IsUnstruct)
**QLLYTVIFSQMALIMTLLFKTPLRKLVIMSLDRVKRGRGPVVVKTVGGTLFIVLMSSVYSILKIQQRTLETGALNPTDQILMSKHMLEASLMGFLLFLSLMMDRLHHYIRELRLLRK*******************************************************************FLLEYDRLL**********************
Disordered Region (DISOPRED)
MIQLLYTVIFSQMALIMTLLFKTPLRKLVIMSLDRVKRGRGPVVVKTVGGTLFIVLMSSVYSILK****************ILMSKHMLEASLMGFLLFLSLMMDRLHHYIRELR***************************************************************************YDRLLA*********************
Disordered Region (DISEMBL)
MIQLLYTVIFSQMALIMTLLFKTPLRKLVIMSLDRVKRGRGPVVVKTVGGTLFIVLMSSVYSILKIQQRTLETGALNPTDQILMSKHMLEASLMGFLLFLSLMMDRLHHYIRELRLLRKAM***********DGKNDNVDERKGLGDDIATLKTKIKKLESECE****************KKQSEGFLLEYDRLLADNQHLRNQLE***********
Disordered Region (DISPRO)
MIQLLYTVIFSQMALIMTLLFKTPLRKLVIMSLDRVKRGRGPVVVKTVGGTLFIVLMSSVYSILKIQQRTLETGALNPTDQILMSKHMLEASLMGFLLFLSLMMDRLHHYIRELRLLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLES**********
Transmembrane Helix (TMHMM)
oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIQLLYTVIFSQMALIMTLLFKTPLRKLVIMSLDRVKRGRGPVVVKTVGGTLFIVLMSSVYSILKIQQRTLETGALNPTDQILMSKHMLEASLMGFLLFLSLMMDRxxxxxxxxxxxxxxxxxxxxxTRSFEDGKNDNVDExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGFLLEYDRLLADNQHLRNQLESIDHSDSKKDM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
357471347	221	hypothetical protein MTR_4g049540 [Medic	0.995	0.977	0.736	5e-89
388491230	221	unknown [Medicago truncatula]	0.995	0.977	0.736	8e-89
356542810	221	PREDICTED: uncharacterized protein LOC10	1.0	0.981	0.737	1e-88
217072308	221	unknown [Medicago truncatula]	0.995	0.977	0.731	2e-88
358248606	213	uncharacterized protein LOC100798727 [Gl	0.972	0.990	0.739	6e-87
297791755	218	hypothetical protein ARALYDRAFT_494776 [	1.0	0.995	0.692	2e-83
9759015	252	unnamed protein product [Arabidopsis tha	0.990	0.853	0.693	2e-83
18422225	218	B-cell receptor-associated 31-like prote	1.0	0.995	0.692	2e-83
21553655	218	unknown [Arabidopsis thaliana]	1.0	0.995	0.692	3e-83
225447047	214	PREDICTED: uncharacterized protein LOC10	0.972	0.985	0.725	4e-83

>gi|357471347|ref|XP_003605958.1| hypothetical protein MTR_4g049540 [Medicago truncatula] gi|355507013|gb|AES88155.1| hypothetical protein MTR_4g049540 [Medicago truncatula] gi|388506748|gb|AFK41440.1| unknown [Medicago truncatula]

 Score =  332 bits (852), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 159/216 (73%), Positives = 185/216 (85%)

Query: 1   MIQLLYTVIFSQMALIMTLLFKTPLRKLVIMSLDRVKRGRGPVVVKTVGGTLFIVLMSSV 60
           M+QLLYT IF +M LI+TL+FKTPLRKLVI+SLDRVKRGRGP+VV TVG TL +VL SS+
Sbjct: 1   MLQLLYTAIFGEMLLILTLVFKTPLRKLVIVSLDRVKRGRGPIVVTTVGATLIVVLSSSL 60

Query: 61  YSILKIQQRTLETGALNPTDQILMSKHMLEASLMGFLLFLSLMMDRLHHYIRELRLLRKA 120
           YS+ KIQQRT+E G LNPTDQ+LMSKHMLEASLMGF+LFLSLM+DRLHHYIRELRLLRK 
Sbjct: 61  YSMAKIQQRTVEAGVLNPTDQVLMSKHMLEASLMGFVLFLSLMIDRLHHYIRELRLLRKT 120

Query: 121 MEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEAL 180
           MEA KKQTRSFEDGKN + +E+K L ++I TLK+K+KKLESECE K  +    + E EAL
Sbjct: 121 MEAVKKQTRSFEDGKNGSTEEQKALTEEITTLKSKVKKLESECEAKGTKEKTLETEVEAL 180

Query: 181 KKQSEGFLLEYDRLLADNQHLRNQLESIDHSDSKKD 216
           KKQSEGFL+EYDRLL DNQ+LR+QLE+ID S S  D
Sbjct: 181 KKQSEGFLMEYDRLLEDNQNLRSQLEAIDQSSSHLD 216

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491230|gb|AFK33681.1| unknown [Medicago truncatula]

 Score =  332 bits (850), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 159/216 (73%), Positives = 184/216 (85%)

Query: 1   MIQLLYTVIFSQMALIMTLLFKTPLRKLVIMSLDRVKRGRGPVVVKTVGGTLFIVLMSSV 60
           M+QLLYT IF +M LI+TL+FKTPLRKLVI+SLDRVKRGRGP+VV TVG TL +VL SS+
Sbjct: 1   MLQLLYTAIFGEMLLILTLVFKTPLRKLVIVSLDRVKRGRGPIVVTTVGATLIVVLSSSL 60

Query: 61  YSILKIQQRTLETGALNPTDQILMSKHMLEASLMGFLLFLSLMMDRLHHYIRELRLLRKA 120
           YS+ KIQQRT+E G LNPTDQ+LMSKHMLEASLMGF+LFLSLM+DRLHHYIRELRLLRK 
Sbjct: 61  YSMAKIQQRTVEAGVLNPTDQVLMSKHMLEASLMGFVLFLSLMIDRLHHYIRELRLLRKT 120

Query: 121 MEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEAL 180
           MEA KKQTRSFEDGKN + +E+K L ++I TLK+K+KKLESECE K  +    + E EAL
Sbjct: 121 MEAVKKQTRSFEDGKNGSTEEQKALTEEITTLKSKVKKLESECEAKGTKEKTLETEVEAL 180

Query: 181 KKQSEGFLLEYDRLLADNQHLRNQLESIDHSDSKKD 216
           KKQSEGF LEYDRLL DNQ+LR+QLE+ID S S  D
Sbjct: 181 KKQSEGFFLEYDRLLEDNQNLRSQLEAIDQSSSHLD 216

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542810|ref|XP_003539858.1| PREDICTED: uncharacterized protein LOC100820199 [Glycine max]

 Score =  331 bits (849), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 163/221 (73%), Positives = 186/221 (84%), Gaps = 4/221 (1%)

Query: 1   MIQLLYTVIFSQMALIMTLLFKTPLRKLVIMSLDRVKRGRGPVVVKTVGGTLFIVLMSSV 60
           M+QLLYT IFS+M LI+TL+FKTPLRKLVI+SLD VKRGRGPVVV TVG TL +VL SS+
Sbjct: 1   MLQLLYTAIFSEMLLILTLVFKTPLRKLVIVSLDSVKRGRGPVVVSTVGATLMVVLASSL 60

Query: 61  YSILKIQQRTLETGALNPTDQILMSKHMLEASLMGFLLFLSLMMDRLHHYIRELRLLRKA 120
           YS+ KIQQRTLE G +NPTDQ+LMSKHMLEASLMGFLLFLSLM+DRLHHYIRELR LRK 
Sbjct: 61  YSMAKIQQRTLEAGIVNPTDQVLMSKHMLEASLMGFLLFLSLMIDRLHHYIRELRSLRKT 120

Query: 121 MEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEAL 180
           MEA KKQ+RSFEDGKN N +E K L ++I TLK+KIKKLESECE K  +A   + E EAL
Sbjct: 121 MEAIKKQSRSFEDGKNGNSEEHKALNEEITTLKSKIKKLESECEAKGSQAKTLETEVEAL 180

Query: 181 KKQSEGFLLEYDRLLADNQHLRNQLESIDHS----DSKKDM 217
           KKQSEGFL+EYDRLL DNQ LR+QL++ID S    D+KK M
Sbjct: 181 KKQSEGFLMEYDRLLEDNQSLRSQLQAIDQSPLNFDNKKSM 221

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072308|gb|ACJ84514.1| unknown [Medicago truncatula]

 Score =  330 bits (847), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 158/216 (73%), Positives = 184/216 (85%)

Query: 1   MIQLLYTVIFSQMALIMTLLFKTPLRKLVIMSLDRVKRGRGPVVVKTVGGTLFIVLMSSV 60
           M+QLLYT IF +M LI+TL+FKTPLRKLVI+SLDRVKRGRGP+VV TVG TL +VL SS+
Sbjct: 1   MLQLLYTAIFGEMLLILTLVFKTPLRKLVIVSLDRVKRGRGPIVVTTVGATLIVVLSSSL 60

Query: 61  YSILKIQQRTLETGALNPTDQILMSKHMLEASLMGFLLFLSLMMDRLHHYIRELRLLRKA 120
           YS+ KIQQRT+E G LNPTDQ+LMSKHMLEASLMGF+LFLSLM+DRLHHYIRELRLLRK 
Sbjct: 61  YSMAKIQQRTVEAGVLNPTDQVLMSKHMLEASLMGFVLFLSLMIDRLHHYIRELRLLRKT 120

Query: 121 MEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEAL 180
            EA KKQTRSFEDGKN + +E+K L ++I TLK+K+KKLESECE K  +    + E EAL
Sbjct: 121 TEAVKKQTRSFEDGKNGSTEEQKALTEEITTLKSKVKKLESECEAKGTKEKTLETEVEAL 180

Query: 181 KKQSEGFLLEYDRLLADNQHLRNQLESIDHSDSKKD 216
           KKQSEGFL+EYDRLL DNQ+LR+QLE+ID S S  D
Sbjct: 181 KKQSEGFLMEYDRLLEDNQNLRSQLEAIDQSSSHLD 216

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248606|ref|NP_001239654.1| uncharacterized protein LOC100798727 [Glycine max] gi|255641962|gb|ACU21248.1| unknown [Glycine max]

 Score =  325 bits (834), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 156/211 (73%), Positives = 182/211 (86%)

Query: 1   MIQLLYTVIFSQMALIMTLLFKTPLRKLVIMSLDRVKRGRGPVVVKTVGGTLFIVLMSSV 60
           M+QLLYT IF +M LI+TL+FKTPLRKLVI+SLDRVKRGRGPVVV TVG TL +VL SS+
Sbjct: 1   MLQLLYTAIFFEMILILTLVFKTPLRKLVIVSLDRVKRGRGPVVVSTVGATLVVVLASSL 60

Query: 61  YSILKIQQRTLETGALNPTDQILMSKHMLEASLMGFLLFLSLMMDRLHHYIRELRLLRKA 120
           YS+ KIQQRTLE G +NPTDQ+LMSKHMLEASLMGF+LFLSLM+DRLHHYIRELR LRK 
Sbjct: 61  YSMAKIQQRTLEAGIVNPTDQVLMSKHMLEASLMGFVLFLSLMIDRLHHYIRELRSLRKT 120

Query: 121 MEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEAL 180
           MEA KKQ+RSFEDGKN N++E K L ++I TLK+KIKKLESECE K  +A   + E EAL
Sbjct: 121 MEAIKKQSRSFEDGKNGNLEEHKALNEEITTLKSKIKKLESECEAKGNQAKTLETEVEAL 180

Query: 181 KKQSEGFLLEYDRLLADNQHLRNQLESIDHS 211
           KKQSEGFL+EYDRLL DNQ LR+QL++I+ +
Sbjct: 181 KKQSEGFLMEYDRLLEDNQSLRSQLQAIEQN 211

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297791755|ref|XP_002863762.1| hypothetical protein ARALYDRAFT_494776 [Arabidopsis lyrata subsp. lyrata] gi|297309597|gb|EFH40021.1| hypothetical protein ARALYDRAFT_494776 [Arabidopsis lyrata subsp. lyrata]

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 151/218 (69%), Positives = 185/218 (84%), Gaps = 1/218 (0%)

Query: 1   MIQLLYTVIFSQMALIMTLLFKTPLRKLVIMSLDRVKRGRGPVVVKTVGGTLFIVLMSSV 60
           MI LLYTVIF++MALI+ LLFKTPLRKL+I++ DR+KRGRGPVVVKT+G T+FIVL+SS+
Sbjct: 1   MIHLLYTVIFAEMALILLLLFKTPLRKLIILTFDRIKRGRGPVVVKTIGITVFIVLLSSI 60

Query: 61  YSILKIQQRTLETGALNPTDQILMSKHMLEASLMGFLLFLSLMMDRLHHYIRELRLLRKA 120
           YS++KIQ+R+ +   LNPTDQ+L SK++LEASLMGF+LFLSLM+DRLHHYIRELRLLRK 
Sbjct: 61  YSLVKIQRRSEDGAVLNPTDQVLASKYLLEASLMGFVLFLSLMIDRLHHYIRELRLLRKT 120

Query: 121 MEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEAL 180
           ME AKKQ R FEDGKN + +E K +G++IA LK KIK LESE E K KE   A+ E EAL
Sbjct: 121 METAKKQNRGFEDGKNTSGEEVKAIGEEIAALKAKIKTLESESESKGKELKGAQGETEAL 180

Query: 181 KKQSEGFLLEYDRLLADNQHLRNQLESIDHS-DSKKDM 217
           +KQ++GFL+EYDRLL DNQ+LRNQLES+ HS + KK M
Sbjct: 181 RKQADGFLMEYDRLLEDNQNLRNQLESVGHSPEGKKGM 218

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9759015|dbj|BAB09328.1| unnamed protein product [Arabidopsis thaliana]

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 149/215 (69%), Positives = 180/215 (83%)

Query: 1   MIQLLYTVIFSQMALIMTLLFKTPLRKLVIMSLDRVKRGRGPVVVKTVGGTLFIVLMSSV 60
           MI LLYTVIF++MALI+ LLFKTPLRKL+I++ DR+KRGRGPVVVKT+G T+F+VL+SS+
Sbjct: 1   MIHLLYTVIFAEMALILLLLFKTPLRKLIILTFDRIKRGRGPVVVKTIGTTVFVVLLSSI 60

Query: 61  YSILKIQQRTLETGALNPTDQILMSKHMLEASLMGFLLFLSLMMDRLHHYIRELRLLRKA 120
           YS++ IQ+R+ +   LNPTDQ+L SKH+LEASLMGF+LFLSLM+DRLHHYIRELRLLRK 
Sbjct: 61  YSLVNIQRRSEDGAVLNPTDQVLASKHLLEASLMGFVLFLSLMIDRLHHYIRELRLLRKT 120

Query: 121 MEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEAL 180
           ME AKKQ R FEDGK  + +E K LG++IA LK KIK LESE E K KE   A+ E EAL
Sbjct: 121 METAKKQNRGFEDGKTTSGEEVKALGEEIAALKAKIKTLESESESKGKELKGAQGETEAL 180

Query: 181 KKQSEGFLLEYDRLLADNQHLRNQLESIDHSDSKK 215
           +KQ++GFL+EYDRLL DNQ+LRNQLESI HS   K
Sbjct: 181 RKQADGFLMEYDRLLEDNQNLRNQLESIGHSPEGK 215

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18422225|ref|NP_568607.1| B-cell receptor-associated 31-like protein [Arabidopsis thaliana] gi|15450826|gb|AAK96684.1| Unknown protein [Arabidopsis thaliana] gi|88196723|gb|ABD43004.1| At5g42570 [Arabidopsis thaliana] gi|332007447|gb|AED94830.1| B-cell receptor-associated 31-like protein [Arabidopsis thaliana]

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 151/218 (69%), Positives = 183/218 (83%), Gaps = 1/218 (0%)

Query: 1   MIQLLYTVIFSQMALIMTLLFKTPLRKLVIMSLDRVKRGRGPVVVKTVGGTLFIVLMSSV 60
           MI LLYTVIF++MALI+ LLFKTPLRKL+I++ DR+KRGRGPVVVKT+G T+F+VL+SS+
Sbjct: 1   MIHLLYTVIFAEMALILLLLFKTPLRKLIILTFDRIKRGRGPVVVKTIGTTVFVVLLSSI 60

Query: 61  YSILKIQQRTLETGALNPTDQILMSKHMLEASLMGFLLFLSLMMDRLHHYIRELRLLRKA 120
           YS++ IQ+R+ +   LNPTDQ+L SKH+LEASLMGF+LFLSLM+DRLHHYIRELRLLRK 
Sbjct: 61  YSLVNIQRRSEDGAVLNPTDQVLASKHLLEASLMGFVLFLSLMIDRLHHYIRELRLLRKT 120

Query: 121 MEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEAL 180
           ME AKKQ R FEDGK  + +E K LG++IA LK KIK LESE E K KE   A+ E EAL
Sbjct: 121 METAKKQNRGFEDGKTTSGEEVKALGEEIAALKAKIKTLESESESKGKELKGAQGETEAL 180

Query: 181 KKQSEGFLLEYDRLLADNQHLRNQLESIDHS-DSKKDM 217
           +KQ++GFL+EYDRLL DNQ+LRNQLESI HS + KK M
Sbjct: 181 RKQADGFLMEYDRLLEDNQNLRNQLESIGHSPEGKKGM 218

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553655|gb|AAM62748.1| unknown [Arabidopsis thaliana]

 Score =  313 bits (802), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 151/218 (69%), Positives = 183/218 (83%), Gaps = 1/218 (0%)

Query: 1   MIQLLYTVIFSQMALIMTLLFKTPLRKLVIMSLDRVKRGRGPVVVKTVGGTLFIVLMSSV 60
           MI LLYTVIF++MALI+ LLFKTPLRKL+I++ DR+KRGRGPVVVKT+G T+F+VL+SS+
Sbjct: 1   MIHLLYTVIFAEMALILLLLFKTPLRKLIILTFDRIKRGRGPVVVKTIGTTVFVVLLSSI 60

Query: 61  YSILKIQQRTLETGALNPTDQILMSKHMLEASLMGFLLFLSLMMDRLHHYIRELRLLRKA 120
           YS++ IQ+R+ +   LNPTDQ+L SKH+LEASLMGF+LFLSLM+DRLHHYIRELRLLRK 
Sbjct: 61  YSLVNIQRRSEDGAVLNPTDQVLASKHLLEASLMGFVLFLSLMIDRLHHYIRELRLLRKT 120

Query: 121 MEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEAL 180
           ME AKKQ R FEDGK  + +E K LG++IA LK KIK LESE E K KE   A+ E EAL
Sbjct: 121 METAKKQNRGFEDGKTTSGEEVKALGEEIAALKAKIKTLESESESKGKELKGAQGETEAL 180

Query: 181 KKQSEGFLLEYDRLLADNQHLRNQLESIDHS-DSKKDM 217
           +KQS+GFL+EYDRLL DN++LRNQLESI HS + KK M
Sbjct: 181 RKQSDGFLMEYDRLLEDNRNLRNQLESIGHSPEGKKGM 218

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447047|ref|XP_002270301.1| PREDICTED: uncharacterized protein LOC100249972 [Vitis vinifera]

 Score =  313 bits (801), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 153/211 (72%), Positives = 188/211 (89%)

Query: 1   MIQLLYTVIFSQMALIMTLLFKTPLRKLVIMSLDRVKRGRGPVVVKTVGGTLFIVLMSSV 60
           MIQLL+TVIF++MALIMTLLFKTPLRKLV+M+LDRVKRGRGP++ +TV  T+F+VLMSSV
Sbjct: 1   MIQLLFTVIFAEMALIMTLLFKTPLRKLVVMALDRVKRGRGPIMAQTVATTVFVVLMSSV 60

Query: 61  YSILKIQQRTLETGALNPTDQILMSKHMLEASLMGFLLFLSLMMDRLHHYIRELRLLRKA 120
           YS++KIQ R++E G +NPTDQ+LM++H+LEASLMGFLLFL+LM+DRLHHYIRELRLLRKA
Sbjct: 61  YSMMKIQNRSVEPGLINPTDQVLMARHLLEASLMGFLLFLALMIDRLHHYIRELRLLRKA 120

Query: 121 MEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEAL 180
           MEA KKQ R FEDGKN   +E K +G+++++L+T+IKKLESECE K KEA AA+A   AL
Sbjct: 121 MEAEKKQNRGFEDGKNGRAEEAKAMGEEMSSLRTQIKKLESECETKAKEAEAAEANTVAL 180

Query: 181 KKQSEGFLLEYDRLLADNQHLRNQLESIDHS 211
           KKQSEGFLLEYDRLL +NQ+L++QLESID  
Sbjct: 181 KKQSEGFLLEYDRLLEENQNLKSQLESIDQG 211

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
TAIR|locus:2152691	218	AT5G42570 "AT5G42570" [Arabido	1.0	0.995	0.527	1.7e-52
TAIR|locus:1005716776	221	AT1G11905 "AT1G11905" [Arabido	0.995	0.977	0.377	5.7e-36
TAIR|locus:2152501	219	AT5G48660 "AT5G48660" [Arabido	0.944	0.936	0.314	5.3e-24
TAIR|locus:2098520	220	AT3G07190 "AT3G07190" [Arabido	0.944	0.931	0.305	1.3e-22
TAIR|locus:2092364	137	AT3G20450 "AT3G20450" [Arabido	0.599	0.948	0.305	4.2e-15

TAIR|locus:2152691 AT5G42570 "AT5G42570" [Arabidopsis thaliana (taxid:3702)]

 Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
 Identities = 115/218 (52%), Positives = 139/218 (63%)

Query:     1 MIQLLYTVIFSQMALIMTLLFKTPLRKLVIMSLDXXXXXXXXXXXXXXXXXLFIVLMSSV 60
             MI LLYTVIF++MALI+ LLFKTPLRKL+I++ D                 +F+VL+SS+
Sbjct:     1 MIHLLYTVIFAEMALILLLLFKTPLRKLIILTFDRIKRGRGPVVVKTIGTTVFVVLLSSI 60

Query:    61 YSILKIQQRTLETGALNPTDQILMSKHMLEAXXXXXXXXXXXXXDRLHHYIRELRLLRKA 120
             YS++ IQ+R+ +   LNPTDQ+L SKH+LEA             DRLHHYIRELRLLRK 
Sbjct:    61 YSLVNIQRRSEDGAVLNPTDQVLASKHLLEASLMGFVLFLSLMIDRLHHYIRELRLLRKT 120

Query:   121 MEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECXXXXXXXXXXXXXXXXX 180
             ME AKKQ R FEDGK  + +E K LG++IA LK KIK LESE                  
Sbjct:   121 METAKKQNRGFEDGKTTSGEEVKALGEEIAALKAKIKTLESESESKGKELKGAQGETEAL 180

Query:   181 XXXXXGFLLEYDRLLADNQHLRNQLESIDHS-DSKKDM 217
                  GFL+EYDRLL DNQ+LRNQLESI HS + KK M
Sbjct:   181 RKQADGFLMEYDRLLEDNQNLRNQLESIGHSPEGKKGM 218

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA;IDA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:1005716776 AT1G11905 "AT1G11905" [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 83/220 (37%), Positives = 127/220 (57%)

Query:     1 MIQLLYTVIFSQMALIMTLLFKTPLRKLVIMSLDXXXXXXXXXXXXXXXXXLFIVLMSSV 60
             M QLL+ V+  ++ +IM L FKTP+RKL+IMSLD                 + ++L++SV
Sbjct:     1 MQQLLFAVVLFEVVVIMALSFKTPIRKLLIMSLDRSKRGRGPVVIQTVSATVIVLLVTSV 60

Query:    61 YSILKIQQRTLETGALNPTDQILMSKHMLEAXXXXXXXXXXXXXDRLHHYIRELRLLRKA 120
             Y+++ IQ+R +E G +NPTD+++M+KH+LE+             DRLHHY+RELR+ RK 
Sbjct:    61 YNMMGIQKRWIEDGVVNPTDEVIMAKHLLESTLMGGFLFLGLMIDRLHHYMRELRIRRKN 120

Query:   121 MEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECXXXXXXXXXXXXXXXXX 180
             ME  KK+    E  K   +DE K L ++I +L+ + ++L+SE                  
Sbjct:   121 MEVIKKEGALLEGVKARGLDEVKNLMEEITSLRKRQEQLDSELEARSKEIRTEKTSAVAL 180

Query:   181 XXXXXGFLLEYDRLLADNQHLRNQLESID----HSDSKKD 216
                  GFL+E++RLL +NQ LR+QL ++D     S SKK+
Sbjct:   181 QKQSEGFLIEFNRLLEENQVLRDQLHTVDSKLSRSSSKKN 220

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;IDA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2152501 AT5G48660 "AT5G48660" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 67/213 (31%), Positives = 105/213 (49%)

Query:     1 MIQLLYTVIFSQMALIMTLLFKT-PLRKLVIMSLDXXXXXXXXXXXXXXXXXLFIVLMSS 59
             MIQLL+ V+F + A+   LL K  PLR+LVI SLD                 + ++L S+
Sbjct:     1 MIQLLFLVLFVEGAIAFLLLIKIGPLRELVIKSLDQMKMGKGPATVKTIAGTMSVILFSN 60

Query:    60 VYSILKIQQRTLETGALNPTDQILMSKHMLEAXXXXXXXXXXXXXDRLHHYIRELRLLRK 119
             + SI+KIQ +  + G ++P DQ+L   H+LEA             DR+HHY+R+L  LR 
Sbjct:    61 LMSIVKIQNKGAKLGTMSPMDQVLWRTHLLEASLLGVVLFLGFIIDRMHHYLRKLINLRS 120

Query:   120 AMEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKI-------KKLESECXXXXXXXXX 172
              + ++K++    +  + +  ++ +    +I  L+ K+       KK E+E          
Sbjct:   121 NVGSSKEELEQLQKERTELKEKEEKASKEIKQLQVKLSSITERLKKAETESKEKEKKLET 180

Query:   173 XXXXXXXXXXXXXGFLLEYDRLLADNQHLRNQL 205
                            LLEYDRLL DNQHL++Q+
Sbjct:   181 AETHVTALQKQSAELLLEYDRLLEDNQHLQSQI 213

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2098520 AT3G07190 "AT3G07190" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 65/213 (30%), Positives = 102/213 (47%)

Query:     1 MIQLLYTVIFSQMALIMTLLFKT-PLRKLVIMSLDXXXXXXXXXXXXXXXXXLFIVLMSS 59
             MIQLL+ V+F + A+   LL K  PLR+LV+ SLD                 + ++L+S+
Sbjct:     1 MIQLLFLVLFVEGAIAFLLLVKIGPLRELVMKSLDQLKLGKRPATLKTIAGTMSVILLSN 60

Query:    60 VYSILKIQQRTLETGALNPTDQILMSKHMLEAXXXXXXXXXXXXXDRLHHYIRELRLLRK 119
             + +I+KIQ +  + G ++P DQ+L   H+LEA             DR HHY+ +L  LR 
Sbjct:    61 LMNIIKIQNKGAKLGTMSPMDQVLWRTHLLEASLMGVVLFFGFIIDRTHHYLEKLITLRS 120

Query:   120 -------AMEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECXXXXXXXXX 172
                     +E  +K+    ++ +     E K L + ++ +   +KKLE E          
Sbjct:   121 NVGSSKGELEELRKERIELKEKEEKTSKEIKQLKEKLSCVSENLKKLEKESKEKETKLET 180

Query:   173 XXXXXXXXXXXXXGFLLEYDRLLADNQHLRNQL 205
                            LLEYDRLL DNQ+L++Q+
Sbjct:   181 AEAHVTALQKQSSELLLEYDRLLEDNQNLQSQI 213

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2092364 AT3G20450 "AT3G20450" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 40/131 (30%), Positives = 70/131 (53%)

Query:     1 MIQLLYTVIFSQMALIMTLLFKTPLRKLVIMSLDXXXXXXXXXXXXXXXXXLFIVLMSSV 60
             M QLL+T++  +  LI+TL F TP R++V+  LD                 + ++  S +
Sbjct:     5 MFQLLFTIVTIEAVLILTLGFGTPARRVVVKLLDLSKQGRAPLVAKTVAATMLVLFGSVM 64

Query:    61 YSILKIQQRTLETGAL-NPTDQILMSKHMLEAXXXXXXXXXXXXXDRLHHYIRELRLLRK 119
             +S ++I  R  E+G + N TDQ++ +  +LEA             DR+H+Y REL++ R+
Sbjct:    65 FSTIQIHTRVSESGGVANSTDQVMFANRLLEAFLMGTVLFLAMVIDRMHYYTRELQITRR 124

Query:   120 AMEAAKKQTRS 130
              +E A K+ ++
Sbjct:   125 NLEIAVKKGKT 135


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.367    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      217       165   0.00093  107 3  10 22  0.47    31
                                                     30  0.45    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  562 (60 KB)
  Total size of DFA:  165 KB (2099 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.90u 0.10s 21.00t   Elapsed:  00:00:01
  Total cpu time:  20.90u 0.10s 21.00t   Elapsed:  00:00:01
  Start:  Thu May  9 16:10:53 2013   End:  Thu May  9 16:10:54 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.8__592__AT5G42570.1 annotation not avaliable (218 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	217
pfam05529	149	pfam05529, Bap31, B-cell receptor-associated prote	2e-04
pfam10211	189	pfam10211, Ax_dynein_light, Axonemal dynein light	5e-04

>gnl|CDD|218624 pfam05529, Bap31, B-cell receptor-associated protein 31-like

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 22/142 (15%)

Query: 4   LLYTVIFS----QMA--LIMTLLFKTPLRKLVIMSLDRVKRGR-GPVVVKTVGGTLFIVL 56
           L +T++F     +MA  L++ L   +P+R+ +  S+ +++  +      K +   L ++ 
Sbjct: 3   LYWTLVFGLLYAEMAVFLLLVLPLPSPIRRKIFKSVSKLQLSQQFQTGFKILLIFLLVLF 62

Query: 57  MSSVYSILKIQ--QRTLETGALNPTDQILMSKHMLEASLM---------GFLLFLSLMMD 105
           + SV  + K     +     +L   ++           L          GF LFL+L++ 
Sbjct: 63  IDSVRRVYKYSGELQGSGNASLGGGERSEYQTLA---RLFYAQRNLYLSGFTLFLTLVIR 119

Query: 106 RLHHYIRELRLLRKAMEAAKKQ 127
           R+   + EL  L + +EA KKQ
Sbjct: 120 RVVTLVEELVKL-EELEALKKQ 140

Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31. Length = 149

>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain

 Score = 39.1 bits (92), Expect = 5e-04
 Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 30/100 (30%)

Query: 117 LRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEANAAKAE 176
           +RKA++A        E GK++              L+ +IKKLE E E  +K     +A+
Sbjct: 112 MRKALQA--------EQGKSE--------------LEQEIKKLEEEKEELEKRVAELEAK 149

Query: 177 AEALKKQSEGFLL--------EYDRLLADNQHLRNQLESI 208
            EA++K+ E            E   L   NQ L++QLE I
Sbjct: 150 LEAIEKREEEERQIEEKRHADEIAFLKKQNQQLKSQLEQI 189

Axonemal dynein light chain proteins play a dynamic role in flagellar and cilia motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains. Length = 189

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	217
KOG1962	216	consensus B-cell receptor-associated protein and r	100.0
PF05529	192	Bap31: B-cell receptor-associated protein 31-like	100.0
COG5374	192	Uncharacterized conserved protein [Function unknow	100.0
KOG1962	216	consensus B-cell receptor-associated protein and r	98.56
COG4372	499	Uncharacterized protein conserved in bacteria with	96.79
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	96.33
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	96.1
PRK11637	428	AmiB activator; Provisional	95.44
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	95.35
PF00038	312	Filament: Intermediate filament protein; InterPro:	94.48
PRK09039	343	hypothetical protein; Validated	94.3
COG5185	622	HEC1 Protein involved in chromosome segregation, i	93.26
PRK11637	428	AmiB activator; Provisional	93.05
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	92.92
PF06810	155	Phage_GP20: Phage minor structural protein GP20; I	92.55
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	92.49
PRK10884	206	SH3 domain-containing protein; Provisional	92.27
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	91.47
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	91.04
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	90.81
PRK10884	206	SH3 domain-containing protein; Provisional	90.24
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	90.16
PF14662	193	CCDC155: Coiled-coil region of CCDC155	90.11
COG4942	420	Membrane-bound metallopeptidase [Cell division and	89.48
PF14662	193	CCDC155: Coiled-coil region of CCDC155	89.3
COG3879	247	Uncharacterized protein conserved in bacteria [Fun	88.94
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	88.36
PRK15422	79	septal ring assembly protein ZapB; Provisional	88.27
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	88.27
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	88.26
KOG2264	907	consensus Exostosin EXT1L [Signal transduction mec	88.18
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	87.95
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	87.65
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	87.33
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	86.97
PF11544	76	Spc42p: Spindle pole body component Spc42p; InterP	86.95
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	86.79
COG4026	290	Uncharacterized protein containing TOPRIM domain,	86.63
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	86.56
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	86.5
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	86.18
PRK12704	520	phosphodiesterase; Provisional	86.14
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	85.76
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	85.74
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	85.69
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	85.41
PF00038	312	Filament: Intermediate filament protein; InterPro:	85.22
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	85.03
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	84.91
PHA02562	562	46 endonuclease subunit; Provisional	84.5
PF14235	157	DUF4337: Domain of unknown function (DUF4337)	84.27
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	83.89
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	83.85
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	83.8
COG5374	192	Uncharacterized conserved protein [Function unknow	83.63
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	83.03
COG4768	139	Uncharacterized protein containing a divergent ver	83.02
PF13094	160	CENP-Q: CENP-Q, a CENPA-CAD centromere complex sub	82.9
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	82.26
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	82.26
PF07061	83	Swi5: Swi5; InterPro: IPR010760 This entry represe	82.17
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	82.17
PRK13169	110	DNA replication intiation control protein YabA; Re	82.14
PF06810	155	Phage_GP20: Phage minor structural protein GP20; I	81.98
PF03954	138	Lectin_N: Hepatic lectin, N-terminal domain; Inter	81.94
PF07407	420	Seadorna_VP6: Seadornavirus VP6 protein; InterPro:	81.77
PF14584	151	DUF4446: Protein of unknown function (DUF4446)	81.55
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	81.21
PHA02562	562	46 endonuclease subunit; Provisional	81.15
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	81.08
PF07407	420	Seadorna_VP6: Seadornavirus VP6 protein; InterPro:	80.86
KOG0963	629	consensus Transcription factor/CCAAT displacement	80.71
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	80.7
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	80.18

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=100.00  E-value=7.2e-47  Score=318.28  Aligned_cols=203  Identities=31%  Similarity=0.444  Sum_probs=161.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHhccchhH-HHHH-HHHHHh-hhccchHHHHHHHHHHHHHHHHHHHHHHhhhhhccc-c-CC
Q 027898            1 MIQLLYTVIFSQMALIMTLLFKTPLR-KLVI-MSLDRV-KRGRGPVVVKTVGGTLFIVLMSSVYSILKIQQRTLE-T-GA   75 (217)
Q Consensus         1 ~~~lvf~~L~~Em~~~llLvlPlP~R-~~~~-~~l~~~-~~~~~~~~~~~~~~~l~llF~Dsi~~~~k~~~~~~~-~-~~   75 (217)
                      ||++||++||+||+++++||+|+|.| |+.+ ...... ..+.+.+++.+++++++++|+|||+++++|...+.. . +.
T Consensus         1 ~~tlvf~iL~~Eial~~iL~Lpip~r~~~~~~~~~~~~~~~~~~~~~i~~~~~villlfiDsvr~i~~~~~~~~~~~n~~   80 (216)
T KOG1962|consen    1 YWTLVFTILYAEIALFLILLLPIPPRRRRKIFKDRLKSGLAPQVLKTIATTMIVILLLFIDSVRRIQKYVSEYGSMANPT   80 (216)
T ss_pred             CHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCc
Confidence            79999999999999999999999864 4433 222233 333368889999999999999999999999876432 1 23


Q ss_pred             CCh--HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhhhhhhhhhhhh
Q 027898           76 LNP--TDQILMSKHMLE--ASLMGFLLFLSLMMDRLHHYIRELRLLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIAT  151 (217)
Q Consensus        76 ~~~--~~~~~~~~~l~~--~YLtGF~LFL~lvI~r~~~li~~l~~l~~~~~a~~kQa~~~~~~~~~~~~~~~~~~~~~~~  151 (217)
                      ++|  ..+++|..|+.|  .|||||+|||||||+|+|+++++++.++++ +.++++++.+.+..+..+    ++..++++
T Consensus        81 ~~~~a~~~~~~~l~raqrn~YisGf~LFL~lvI~R~~~ll~~l~~l~~~-~~~~~~~~~lk~~~~~~~----~~~~~~~~  155 (216)
T KOG1962|consen   81 DQPLARTHLLEALFRAQRNLYISGFVLFLSLVIRRLHTLLRELATLRAN-EKAMKENEALKKQLENSS----KLEEENDK  155 (216)
T ss_pred             cchHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhhhccc----chhhhHHH
Confidence            334  455677655553  699999999999999999999999999996 555555554443221111    13445566


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhhc
Q 027898          152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLESI  208 (217)
Q Consensus       152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~~  208 (217)
                      ..++.++|+++++++++++++++++.++|+||+++++.|||||+|||++||+++++.
T Consensus       156 ~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~~  212 (216)
T KOG1962|consen  156 LKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIESG  212 (216)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcc
Confidence            788999999999999999999999999999999999999999999999999999984

>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8

Probab=100.00  E-value=1.3e-42  Score=290.37  Aligned_cols=178  Identities=34%  Similarity=0.507  Sum_probs=147.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhccch--hHHHHHHHHH-HhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc--CCC
Q 027898            2 IQLLYTVIFSQMALIMTLLFKTP--LRKLVIMSLD-RVKRGRGPVVVKTVGGTLFIVLMSSVYSILKIQQRTLET--GAL   76 (217)
Q Consensus         2 ~~lvf~~L~~Em~~~llLvlPlP--~R~~~~~~l~-~~~~~~~~~~~~~~~~~l~llF~Dsi~~~~k~~~~~~~~--~~~   76 (217)
                      |++||++|++||+++++||+|+|  .|+.++++++ .+..+++++++++++++++++|+|||+++++|+.+.++.  ++.
T Consensus         5 ~~lvf~~L~~Ei~~~~lL~lPlp~~~R~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lf~ds~~~~~k~~~~~~~~~~~~~   84 (192)
T PF05529_consen    5 WSLVFGLLYAEIAVLLLLVLPLPSPIRRKIFKFLDKSFFSGKFKTVFKILLAILLLLFLDSIRRMYKYSSEYEEAKDDHP   84 (192)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCC
Confidence            79999999999999999999996  4888888887 556777999999999999999999999999998876532  222


Q ss_pred             C---hHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhhhhhhhhhhhh
Q 027898           77 N---PTDQILMSKHMLE--ASLMGFLLFLSLMMDRLHHYIRELRLLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIAT  151 (217)
Q Consensus        77 ~---~~~~~~~~~~l~~--~YLtGF~LFL~lvI~r~~~li~~l~~l~~~~~a~~kQa~~~~~~~~~~~~~~~~~~~~~~~  151 (217)
                      +   +.++++|++|++|  +|||||+|||++||+|+++++++++.++++.+++.+|++++++....       .      
T Consensus        85 ~~~~~~~~~~~~~fraQRN~YIsGf~LfL~l~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~-------~------  151 (192)
T PF05529_consen   85 NPDRTEDQVLAKKFRAQRNMYISGFALFLSLVIRRVHSLIKELIKLEEKLEALKKQAESASEAAEK-------L------  151 (192)
T ss_pred             CccchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-------h------
Confidence            2   4678899999998  89999999999999999999999999999999999998887642110       0      


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH
Q 027898          152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYD  192 (217)
Q Consensus       152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYd  192 (217)
                      .+++.+++++|+++.+++|+++++|.++||||++|+++|||
T Consensus       152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~eyd  192 (192)
T PF05529_consen  152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEYD  192 (192)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            22344455555666666666677777999999999999998

Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane

>COG5374 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=7e-33  Score=225.53  Aligned_cols=171  Identities=16%  Similarity=0.242  Sum_probs=130.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhccchh--HHHHHHHHHHh-hhccchHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc--CCC
Q 027898            2 IQLLYTVIFSQMALIMTLLFKTPL--RKLVIMSLDRV-KRGRGPVVVKTVGGTLFIVLMSSVYSILKIQQRTLET--GAL   76 (217)
Q Consensus         2 ~~lvf~~L~~Em~~~llLvlPlP~--R~~~~~~l~~~-~~~~~~~~~~~~~~~l~llF~Dsi~~~~k~~~~~~~~--~~~   76 (217)
                      |++||.+|++||++|++|+||+|+  ||++++.++.+ +.+++++++++++++++++|+|||+|+++++.+.+..  ..+
T Consensus         5 ~~lvfslL~vEm~~f~il~LPlp~r~RR~l~~~~~~~~~~~~~k~il~i~~~~IllLFiDS~~Rv~rv~~~~nl~~a~~n   84 (192)
T COG5374           5 YTLVFSLLVVEMVMFFILVLPLPKRLRRSLMKLYSTSKVYRGFKHILKITFIFILLLFIDSWKRVYRVSKEANLYSASIN   84 (192)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhHHhhhhhhhhhhcccccc
Confidence            789999999999999999999997  68888888744 5566899999999999999999999999998876422  122


Q ss_pred             C---hHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhhhhhhhhhhhh
Q 027898           77 N---PTDQILMSKHMLE--ASLMGFLLFLSLMMDRLHHYIRELRLLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIAT  151 (217)
Q Consensus        77 ~---~~~~~~~~~~l~~--~YLtGF~LFL~lvI~r~~~li~~l~~l~~~~~a~~kQa~~~~~~~~~~~~~~~~~~~~~~~  151 (217)
                      |   .+.++++|+||+|  ||||||+|||++|+.|+++++.+++..++...+              +.|          +
T Consensus        85 ~~~~~~i~~las~fy~qrnmyl~g~~L~l~~~v~~~~~~v~~ml~~~~~~~~--------------k~D----------~  140 (192)
T COG5374          85 NYAVTRIAVLASRFYAQRNMYLSGSALFLSIVVMRVMSIVEEMLEENAKKGG--------------KID----------K  140 (192)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--------------chh----------h
Confidence            2   2557899999998  899999999999999999999999987764331              111          1


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898          152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLES  207 (217)
Q Consensus       152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~  207 (217)
                      ...+...+++++..+++       +.+.|+|+-+++.++||    +++++.++.+.
T Consensus       141 ~eA~~t~lk~~~~~~~~-------~le~Lqkn~~~~~k~~d----~~ne~~~~v~~  185 (192)
T COG5374         141 MEADSTDLKARLRKAQI-------LLEGLQKNQEELFKLLD----KYNELREQVQK  185 (192)
T ss_pred             hhcchHHHHHHHhhhhH-------HHHHHHHHHHHHHHHHH----HHhHHHHHHHH
Confidence            22334445555544444       44888888777666665    45666666554

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=98.56  E-value=5.2e-06  Score=70.75  Aligned_cols=169  Identities=24%  Similarity=0.322  Sum_probs=128.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCC-ChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027898           41 GPVVVKTVGGTLFIVLMSSVYSILKIQQRTLETGAL-NPTDQILMSKHMLE-ASLMGFLLFLSLMMDRLHHYIRELRLLR  118 (217)
Q Consensus        41 ~~~~~~~~~~~l~llF~Dsi~~~~k~~~~~~~~~~~-~~~~~~~~~~~l~~-~YLtGF~LFL~lvI~r~~~li~~l~~l~  118 (217)
                      ++.+.++++++++++++--+-.+++++......+.. ||.++..++.++.. +|.+++-+|++=+.=-+.-+|.++..+-
T Consensus        41 ~~~~~~~i~~~~~villlfiDsvr~i~~~~~~~~~~~n~~~~~~a~~~~~~~l~raqrn~YisGf~LFL~lvI~R~~~ll  120 (216)
T KOG1962|consen   41 APQVLKTIATTMIVILLLFIDSVRRIQKYVSEYGSMANPTDQPLARTHLLEALFRAQRNLYISGFVLFLSLVIRRLHTLL  120 (216)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCccchHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHH
Confidence            478899999999999999999999999987777776 47899989988877 7999999999866666667777777777


Q ss_pred             HHHHHHHHh--hhhhhcCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHH
Q 027898          119 KAMEAAKKQ--TRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLA  196 (217)
Q Consensus       119 ~~~~a~~kQ--a~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~  196 (217)
                      ..+..++.+  ++....       ..++....-+.+.+|..+++.+++.++.++++-+.+.+...++.+.+.+--+++.+
T Consensus       121 ~~l~~l~~~~~~~~~~~-------~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~  193 (216)
T KOG1962|consen  121 RELATLRANEKAMKENE-------ALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQD  193 (216)
T ss_pred             HHHHHHHhhHHHHHHHH-------HHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            666665533  222211       11111111122567788899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhc-c--ccCCCcC
Q 027898          197 DNQHLRNQLESI-D--HSDSKKD  216 (217)
Q Consensus       197 e~~~l~~~~~~~-~--~~~~KK~  216 (217)
                      ||++|-++-+.- +  .+++||+
T Consensus       194 EydrLlee~~~Lq~~i~~~~~k~  216 (216)
T KOG1962|consen  194 EYDRLLEEYSKLQEQIESGGKKK  216 (216)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCC
Confidence            999997553322 2  5667664

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=96.79  E-value=0.031  Score=51.66  Aligned_cols=116  Identities=16%  Similarity=0.229  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 027898           91 ASLMGFLLFLSLMMDR-LHHYIRELRLLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKE  169 (217)
Q Consensus        91 ~YLtGF~LFL~lvI~r-~~~li~~l~~l~~~~~a~~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~ke  169 (217)
                      |-||..+|-..|+++| +.+=|.++......+++++.+.+.+++.+..-..|...-..|...-++|-+..+.++...+++
T Consensus        52 ~liSA~tLailf~~~~~lr~gVfqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n  131 (499)
T COG4372          52 MLISAATLAILFLLNRNLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQN  131 (499)
T ss_pred             chhhHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677778877777776 456678888888888888877766654321111111222223344556777788889999999


Q ss_pred             HHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898          170 ANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE  206 (217)
Q Consensus       170 l~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~  206 (217)
                      +.+|..|..-+.+|+.+++.+.-.|.+++.++..+.+
T Consensus       132 ~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~q  168 (499)
T COG4372         132 LAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQ  168 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998888888877654443

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=96.33  E-value=0.011  Score=38.35  Aligned_cols=34  Identities=29%  Similarity=0.521  Sum_probs=31.3

Q ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898          174 KAEAEALKKQSEGFLLEYDRLLADNQHLRNQLES  207 (217)
Q Consensus       174 ~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~  207 (217)
                      +.|.++||.+.+.|..+||+|..|++.|+.++..
T Consensus         4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~   37 (45)
T PF02183_consen    4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEVQE   37 (45)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5678999999999999999999999999988874

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=96.10  E-value=0.28  Score=39.20  Aligned_cols=90  Identities=19%  Similarity=0.287  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027898          103 MMDRLHHYIRELRLLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEALKK  182 (217)
Q Consensus       103 vI~r~~~li~~l~~l~~~~~a~~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKk  182 (217)
                      ||+-++.+|.....-....+.+..+              ......++..+...++.|+.+++.++.++..++.+..++++
T Consensus        36 vin~i~~Ll~~~~r~~~~~e~l~~~--------------~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~  101 (151)
T PF11559_consen   36 VINCIYDLLQQRDRDMEQREDLSDK--------------LRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQK  101 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666555544444443322              22233344556777888888888888888888888888888


Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHhh
Q 027898          183 QSEGFLLEYDRLLADNQHLRNQLE  206 (217)
Q Consensus       183 Qae~l~~EYdrL~~e~~~l~~~~~  206 (217)
                      +...+..---...+|.++++..++
T Consensus       102 ~~~~~~~~~k~~kee~~klk~~~~  125 (151)
T PF11559_consen  102 QLKSLEAKLKQEKEELQKLKNQLQ  125 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888887777777777777776655

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PRK11637 AmiB activator; Provisional

Probab=95.44  E-value=0.61  Score=43.55  Aligned_cols=54  Identities=6%  Similarity=-0.024  Sum_probs=30.5

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Q 027898          148 DIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHL  201 (217)
Q Consensus       148 ~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l  201 (217)
                      ++..+..+++.+..+|...+.+|...+.+++.+.++.+.++++.+...+.....
T Consensus        76 ~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~r  129 (428)
T PRK11637         76 QLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQ  129 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555555555555556665555566666666666666665555554443

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.35  E-value=2.7  Score=40.77  Aligned_cols=55  Identities=31%  Similarity=0.389  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH---HHHHHHHHHHHHHHHHHhhhc
Q 027898          154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGF---LLEYDRLLADNQHLRNQLESI  208 (217)
Q Consensus       154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l---~~EYdrL~~e~~~l~~~~~~~  208 (217)
                      ++++.|+.|++.++.++++-+.+.+.||+|.++.   -+++.|..-|.++++..++..
T Consensus       294 ~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i  351 (581)
T KOG0995|consen  294 KKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKI  351 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            5688999999999999999999999999999987   578888888888888877754

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=94.48  E-value=1.8  Score=38.25  Aligned_cols=31  Identities=23%  Similarity=0.497  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 027898          103 MMDRLHHYIRELRLLRKAMEAAKKQTRSFED  133 (217)
Q Consensus       103 vI~r~~~li~~l~~l~~~~~a~~kQa~~~~~  133 (217)
                      .=.|+.++|.+.-.+++....+..+......
T Consensus         9 LNdRla~YIekVr~LE~~N~~Le~~i~~~~~   39 (312)
T PF00038_consen    9 LNDRLASYIEKVRFLEQENKRLESEIEELRE   39 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Confidence            4467777777777777777776666555443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PRK09039 hypothetical protein; Validated

Probab=94.30  E-value=4.1  Score=37.18  Aligned_cols=33  Identities=21%  Similarity=0.191  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027898           92 SLMGFLLFLSLMMDRLHHYIRELRLLRKAMEAA  124 (217)
Q Consensus        92 YLtGF~LFL~lvI~r~~~li~~l~~l~~~~~a~  124 (217)
                      -|+.-+=-|.+=-.+.-.+=.++..+++.++++
T Consensus        61 qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a   93 (343)
T PRK09039         61 QIAELADLLSLERQGNQDLQDSVANLRASLSAA   93 (343)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            344444444555555555555555555554443

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=93.26  E-value=8.1  Score=37.04  Aligned_cols=55  Identities=27%  Similarity=0.442  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH---HHHHHHHHHHHHHHHHHhhhc
Q 027898          154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGF---LLEYDRLLADNQHLRNQLESI  208 (217)
Q Consensus       154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l---~~EYdrL~~e~~~l~~~~~~~  208 (217)
                      +.+++|+.+++.++.+|+.-+++.+.|++|..+.   ..+|.....|.++|-..|++.
T Consensus       330 g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i  387 (622)
T COG5185         330 GKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKI  387 (622)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            4688999999999999999999999999998875   456666667777777766654

>PRK11637 AmiB activator; Provisional

Probab=93.05  E-value=2.4  Score=39.55  Aligned_cols=52  Identities=13%  Similarity=0.152  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 027898          153 KTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQ  204 (217)
Q Consensus       153 ~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~  204 (217)
                      ..+++.+..+|+..+.++...+.+++.+..+.+.++.+-+.+.++.+..+..
T Consensus        74 ~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~  125 (428)
T PRK11637         74 LAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERL  125 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444444444444444444333

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=92.92  E-value=0.86  Score=38.07  Aligned_cols=61  Identities=30%  Similarity=0.359  Sum_probs=45.3

Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 027898          144 GLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQ  204 (217)
Q Consensus       144 ~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~  204 (217)
                      ....++..+..++..++.+++.+++.+...+.+..+|.-|..-++....+|.+||..|=+.
T Consensus       120 ~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~R  180 (194)
T PF08614_consen  120 ELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVER  180 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555667777788888888888887777777888888888888888888888777444

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length

Probab=92.55  E-value=1  Score=36.61  Aligned_cols=49  Identities=22%  Similarity=0.273  Sum_probs=37.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHhhHHHHHHHHHHHHHH
Q 027898          152 LKTKIKKLESECEMKDKEANAAKA---EAEALKKQSEGFLLEYDRLLADNQH  200 (217)
Q Consensus       152 l~~e~~~Lk~el~~~~kel~~~~~---d~~aLKkQae~l~~EYdrL~~e~~~  200 (217)
                      ..++.+.++.+|..+++.|+.-+.   |.+.|++|++.++.+|+.-.++|+.
T Consensus        25 ~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~   76 (155)
T PF06810_consen   25 VKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEA   76 (155)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445677777777777776655544   8899999999999999977777754

The function of this family is unknown.; GO: 0005198 structural molecule activity

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=92.49  E-value=5.2  Score=32.84  Aligned_cols=51  Identities=29%  Similarity=0.354  Sum_probs=27.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 027898          152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLR  202 (217)
Q Consensus       152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~  202 (217)
                      ++...+.+.+++....+++...+..++.++.+.+.++.+|+++.+..+.++
T Consensus       135 l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  185 (191)
T PF04156_consen  135 LDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQ  185 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555555544444444455556666666666666666655444443

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PRK10884 SH3 domain-containing protein; Provisional

Probab=92.27  E-value=3.3  Score=35.29  Aligned_cols=27  Identities=15%  Similarity=-0.052  Sum_probs=14.2

Q ss_pred             HHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 027898          178 EALKKQSEGFLLEYDRLLADNQHLRNQ  204 (217)
Q Consensus       178 ~aLKkQae~l~~EYdrL~~e~~~l~~~  204 (217)
                      +.|++|.+.++++-|.+..+++.++++
T Consensus       142 ~~L~~~l~~~~~~~~~l~~~~~~~~~~  168 (206)
T PRK10884        142 QKLKNQLIVAQKKVDAANLQLDDKQRT  168 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555555443

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=91.47  E-value=3.3  Score=40.84  Aligned_cols=82  Identities=20%  Similarity=0.263  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 027898          105 DRLHHYIRELRLLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQS  184 (217)
Q Consensus       105 ~r~~~li~~l~~l~~~~~a~~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQa  184 (217)
                      .++..++.++..++..+..+.++...+..            .+.+..+.+++++++.++.+.+.++...+.+.+.+++|.
T Consensus       391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~~------------~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i  458 (650)
T TIGR03185       391 DAKSQLLKELRELEEELAEVDKKISTIPS------------EEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAI  458 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCC------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666777777777777777666444321            012334455556666666666666666666667777777


Q ss_pred             hhHHHHHHHHHHHH
Q 027898          185 EGFLLEYDRLLADN  198 (217)
Q Consensus       185 e~l~~EYdrL~~e~  198 (217)
                      +.+.++++++.+..
T Consensus       459 ~~~~~~~~~~~~~~  472 (650)
T TIGR03185       459 EALRKTLDEKTKQK  472 (650)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777776665444

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=91.04  E-value=9.3  Score=33.04  Aligned_cols=44  Identities=20%  Similarity=0.246  Sum_probs=20.2

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHH
Q 027898          148 DIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEY  191 (217)
Q Consensus       148 ~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EY  191 (217)
                      ++..+..+++.|+...+..++.+.+.+.+++.|+.|.++...-.
T Consensus        57 e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~  100 (251)
T PF11932_consen   57 EYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETR  100 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444455555555444333

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=90.81  E-value=4  Score=38.91  Aligned_cols=79  Identities=23%  Similarity=0.298  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHh
Q 027898          107 LHHYIRELRLLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEANAAK-AEAEALKKQSE  185 (217)
Q Consensus       107 ~~~li~~l~~l~~~~~a~~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~-~d~~aLKkQae  185 (217)
                      +-+++.++-.++.+++.+.+|                     |+.+.+|+++|++.....+..+..+- .....+.+|.+
T Consensus        61 lrTlva~~k~~r~~~~~l~~~---------------------N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~  119 (472)
T TIGR03752        61 LRTLVAEVKELRKRLAKLISE---------------------NEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIE  119 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHH
Confidence            334555555566666555533                     23455666666666555556555553 33456677777


Q ss_pred             hHHHHHHHHHHHHHHHHHHhh
Q 027898          186 GFLLEYDRLLADNQHLRNQLE  206 (217)
Q Consensus       186 ~l~~EYdrL~~e~~~l~~~~~  206 (217)
                      .++.+-.++....+.|+.+|+
T Consensus       120 ql~~~~~~~~~~l~~l~~~l~  140 (472)
T TIGR03752       120 QLKSERQQLQGLIDQLQRRLA  140 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            777777777777778887774

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=90.24  E-value=2.1  Score=36.43  Aligned_cols=14  Identities=7%  Similarity=0.107  Sum_probs=6.2

Q ss_pred             HHHHHHHHHHHHHH
Q 027898          112 RELRLLRKAMEAAK  125 (217)
Q Consensus       112 ~~l~~l~~~~~a~~  125 (217)
                      .++-.++.+++.++
T Consensus        93 ~rlp~le~el~~l~  106 (206)
T PRK10884         93 TRVPDLENQVKTLT  106 (206)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33344444444444

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.16  E-value=6.4  Score=34.87  Aligned_cols=15  Identities=27%  Similarity=0.530  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHHHHHH
Q 027898           85 SKHMLEASLMGFLLF   99 (217)
Q Consensus        85 ~~~l~~~YLtGF~LF   99 (217)
                      ++.++-+-+.+++.+
T Consensus         2 ~kk~~~a~~~s~v~~   16 (265)
T COG3883           2 KKKILLAVLLSLVII   16 (265)
T ss_pred             chHHHHHHHHHHHHH
Confidence            333444433333333

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=90.11  E-value=7.9  Score=32.70  Aligned_cols=15  Identities=27%  Similarity=0.439  Sum_probs=6.4

Q ss_pred             HHHHHHHHHHhhhhh
Q 027898          117 LRKAMEAAKKQTRSF  131 (217)
Q Consensus       117 l~~~~~a~~kQa~~~  131 (217)
                      +.+.+..+.+|+.+.
T Consensus        41 L~~e~~~L~~q~~s~   55 (193)
T PF14662_consen   41 LAEEITDLRKQLKSL   55 (193)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333344444444443

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=89.48  E-value=6.5  Score=37.04  Aligned_cols=93  Identities=19%  Similarity=0.233  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 027898           89 LEASLMGFLLFLSLMMDRLHHYIRELRLLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDK  168 (217)
Q Consensus        89 ~~~YLtGF~LFL~lvI~r~~~li~~l~~l~~~~~a~~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~k  168 (217)
                      ...-++|++++.+++   ....-.++-..+.++++..+.              .....++-+.+..+++++++++...+.
T Consensus        18 ~~~~l~~~~~~~s~s---~~a~~~~l~q~q~ei~~~~~~--------------i~~~~~~~~kL~~~lk~~e~~i~~~~~   80 (420)
T COG4942          18 LASLLSAAVLAAAFS---AAADDKQLKQIQKEIAALEKK--------------IREQQDQRAKLEKQLKSLETEIASLEA   80 (420)
T ss_pred             HHHHHHhcccccchh---HHhHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566666776666   333324455555555443321              111112223355566666666666666


Q ss_pred             HHHHHHHHHHHHHHhHhhHHHHHHHHHHHH
Q 027898          169 EANAAKAEAEALKKQSEGFLLEYDRLLADN  198 (217)
Q Consensus       169 el~~~~~d~~aLKkQae~l~~EYdrL~~e~  198 (217)
                      ++...+.+.+.+.++.+.+...-..|..++
T Consensus        81 ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~  110 (420)
T COG4942          81 QLIETADDLKKLRKQIADLNARLNALEVQE  110 (420)
T ss_pred             HHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            666666666777777666666666555544

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=89.30  E-value=12  Score=31.73  Aligned_cols=22  Identities=23%  Similarity=0.383  Sum_probs=9.9

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHh
Q 027898          184 SEGFLLEYDRLLADNQHLRNQL  205 (217)
Q Consensus       184 ae~l~~EYdrL~~e~~~l~~~~  205 (217)
                      .+++++-|..|..+...||.|+
T Consensus       118 ~~~lk~~~~eL~~~~~~Lq~Ql  139 (193)
T PF14662_consen  118 RDGLKKRSKELATEKATLQRQL  139 (193)
T ss_pred             hhhHHHHHHHHHHhhHHHHHHH
Confidence            3333333444444445555554

>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.94  E-value=9.8  Score=33.38  Aligned_cols=21  Identities=29%  Similarity=0.309  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 027898           89 LEASLMGFLLFLSLMMDRLHH  109 (217)
Q Consensus        89 ~~~YLtGF~LFL~lvI~r~~~  109 (217)
                      ..+-+.|+++++++-+..+..
T Consensus        11 ~~~l~a~v~~~~s~~~~~~l~   31 (247)
T COG3879          11 LEMLDAGVFWMLSISLAMLLA   31 (247)
T ss_pred             hHHHHHHHHHHHHHHHHHHHH
Confidence            456778877777776655443

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=88.36  E-value=4.7  Score=33.59  Aligned_cols=48  Identities=21%  Similarity=0.224  Sum_probs=21.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 027898          150 ATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQ  204 (217)
Q Consensus       150 ~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~  204 (217)
                      ..+..++..|+.++...+.++       ....+-.+.++.||.-|.-+++.+..+
T Consensus       119 ~~l~~~~~~L~~~~~~l~~~l-------~ek~k~~e~l~DE~~~L~l~~~~~e~k  166 (194)
T PF08614_consen  119 AELEAELAQLEEKIKDLEEEL-------KEKNKANEILQDELQALQLQLNMLEEK  166 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444       444444444444444444444444333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=88.27  E-value=7.9  Score=28.07  Aligned_cols=53  Identities=19%  Similarity=0.292  Sum_probs=36.1

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898          148 DIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLES  207 (217)
Q Consensus       148 ~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~  207 (217)
                      .|+-+.-|+++||.+-.....+.       +.++.+-+.|..+...|.+|++.-++.+..
T Consensus        19 tI~LLqmEieELKekn~~L~~e~-------~~~~~~r~~L~~en~qLk~E~~~WqerLr~   71 (79)
T PRK15422         19 TITLLQMEIEELKEKNNSLSQEV-------QNAQHQREELERENNHLKEQQNGWQERLQA   71 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445666666666555554544       777777778888888888888877776653

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=88.27  E-value=10  Score=32.01  Aligned_cols=8  Identities=13%  Similarity=-0.139  Sum_probs=3.8

Q ss_pred             HHHHHHHH
Q 027898           92 SLMGFLLF   99 (217)
Q Consensus        92 YLtGF~LF   99 (217)
                      |-...|.=
T Consensus        17 YYndIT~~   24 (201)
T PF13851_consen   17 YYNDITLN   24 (201)
T ss_pred             HHHHHHHH
Confidence            54554443

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=88.26  E-value=14  Score=31.01  Aligned_cols=30  Identities=50%  Similarity=0.558  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhHHHHHH
Q 027898          163 CEMKDKEANAAKAEAEALKKQSEGFLLEYD  192 (217)
Q Consensus       163 l~~~~kel~~~~~d~~aLKkQae~l~~EYd  192 (217)
                      -+..++++.+.+.+.++++..+++..-+|.
T Consensus       154 ke~~~~ei~~lks~~~~l~~~~~~~e~~F~  183 (190)
T PF05266_consen  154 KEAKDKEISRLKSEAEALKEEIENAELEFQ  183 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444554555555555555555544443

>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]

Probab=88.18  E-value=3.9  Score=40.08  Aligned_cols=48  Identities=21%  Similarity=0.250  Sum_probs=33.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHH
Q 027898          152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQ  199 (217)
Q Consensus       152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~  199 (217)
                      +..|++++...+|+.++.|..++.|+.+||--.++-+..|..+.+.++
T Consensus       105 l~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~  152 (907)
T KOG2264|consen  105 LNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNN  152 (907)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcC
Confidence            344555555555555566666666669999999999888888876653

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=87.95  E-value=15  Score=30.87  Aligned_cols=11  Identities=9%  Similarity=0.057  Sum_probs=5.6

Q ss_pred             HHHHHHHHHHh
Q 027898           55 VLMSSVYSILK   65 (217)
Q Consensus        55 lF~Dsi~~~~k   65 (217)
                      .|++.+-.+.+
T Consensus        51 ~f~~l~e~v~~   61 (190)
T PF05266_consen   51 TFANLAEKVKK   61 (190)
T ss_pred             HHHHHHHHHHH
Confidence            45555555533

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=87.65  E-value=12  Score=33.88  Aligned_cols=15  Identities=33%  Similarity=0.268  Sum_probs=5.4

Q ss_pred             HHHHHHHHHHHHHHH
Q 027898          190 EYDRLLADNQHLRNQ  204 (217)
Q Consensus       190 EYdrL~~e~~~l~~~  204 (217)
                      +.+.+...++..+++
T Consensus       114 e~~sl~~q~~~~~~~  128 (314)
T PF04111_consen  114 ERDSLKNQYEYASNQ  128 (314)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=87.33  E-value=13  Score=29.49  Aligned_cols=52  Identities=19%  Similarity=0.293  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH----HHHHHHHHHHHHh
Q 027898          154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYD----RLLADNQHLRNQL  205 (217)
Q Consensus       154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYd----rL~~e~~~l~~~~  205 (217)
                      .+...++.++......++....++..++..+.+...-|.    |---|+++|++++
T Consensus        94 ~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL  149 (151)
T PF11559_consen   94 EKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERL  149 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334445555555555555555555666655555554443    2223445555554

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=86.97  E-value=22  Score=32.06  Aligned_cols=49  Identities=22%  Similarity=0.279  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 027898          156 IKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQ  204 (217)
Q Consensus       156 ~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~  204 (217)
                      ++.++.+|...+.+++.-+++++.++.|.+.++.+-+.+.++.+.++.+
T Consensus       211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~e  259 (325)
T PF08317_consen  211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAE  259 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333444444444444444444444443333

>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S

Probab=86.95  E-value=5.1  Score=28.89  Aligned_cols=47  Identities=21%  Similarity=0.203  Sum_probs=25.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHh
Q 027898          152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQL  205 (217)
Q Consensus       152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~  205 (217)
                      +-+++++|+..|..++.||       +-|+..+++|...--...+-+.+|+.+.
T Consensus         3 Li~qNk~L~~kL~~K~eEI-------~rLn~lv~sLR~KLiKYt~LnkkLq~~~   49 (76)
T PF11544_consen    3 LIKQNKELKKKLNDKQEEI-------DRLNILVGSLRGKLIKYTELNKKLQDQL   49 (76)
T ss_dssp             ---HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456667777777777777       6666666666554444444444444433

cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=86.79  E-value=15  Score=29.53  Aligned_cols=28  Identities=18%  Similarity=0.227  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 027898          105 DRLHHYIRELRLLRKAMEAAKKQTRSFE  132 (217)
Q Consensus       105 ~r~~~li~~l~~l~~~~~a~~kQa~~~~  132 (217)
                      .++-++=+++...+++.+.+..+++++.
T Consensus        24 ~~v~~LEreLe~~q~~~e~~~~daEn~k   51 (140)
T PF10473_consen   24 DHVESLERELEMSQENKECLILDAENSK   51 (140)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            4556666677777777776666666554

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=86.63  E-value=7  Score=33.99  Aligned_cols=50  Identities=16%  Similarity=0.250  Sum_probs=31.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898          150 ATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE  206 (217)
Q Consensus       150 ~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~  206 (217)
                      +.+.+++++|+.+++..+..|       +.|.+.-..|+..+++|..++.+|+....
T Consensus       152 eeL~~eleele~e~ee~~erl-------k~le~E~s~LeE~~~~l~~ev~~L~~r~~  201 (290)
T COG4026         152 EELLKELEELEAEYEEVQERL-------KRLEVENSRLEEMLKKLPGEVYDLKKRWD  201 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence            345556666666666665555       55666666666667777667777766554

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=86.56  E-value=19  Score=35.16  Aligned_cols=30  Identities=23%  Similarity=0.368  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 027898          102 LMMDRLHHYIRELRLLRKAMEAAKKQTRSF  131 (217)
Q Consensus       102 lvI~r~~~li~~l~~l~~~~~a~~kQa~~~  131 (217)
                      -.=+|+..+|...-.|+++...+..+..-.
T Consensus        46 ~LNDRLA~YIekVR~LEaqN~~L~~di~~l   75 (546)
T KOG0977|consen   46 ELNDRLAVYIEKVRFLEAQNRKLEHDINLL   75 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356778888888777887777766554443

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.50  E-value=24  Score=36.07  Aligned_cols=53  Identities=17%  Similarity=0.241  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898          154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE  206 (217)
Q Consensus       154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~  206 (217)
                      .-..++|..+...+-+++.-+.+..+|+-+-++++.+|-....+|+++.++.+
T Consensus       657 ~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~  709 (970)
T KOG0946|consen  657 DIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLD  709 (970)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555555555555556677777777777777766666665555443

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=86.18  E-value=9.6  Score=33.82  Aligned_cols=51  Identities=24%  Similarity=0.367  Sum_probs=29.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHH
Q 027898          150 ATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQH  200 (217)
Q Consensus       150 ~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~  200 (217)
                      ..+..+...|+..|++++.|++.+++-+++|++===..-.||++|-+|.++
T Consensus       186 ~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~  236 (267)
T PF10234_consen  186 NNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQK  236 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence            334445555666666666666555555555554444445677777666544

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>PRK12704 phosphodiesterase; Provisional

Probab=86.14  E-value=25  Score=34.02  Aligned_cols=33  Identities=18%  Similarity=0.250  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Q 027898          165 MKDKEANAAKAEAEALKKQSEGFLLEYDRLLAD  197 (217)
Q Consensus       165 ~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e  197 (217)
                      +++++|..-+.+++..+++.+...++|+++.++
T Consensus       107 kke~eL~~re~~Le~re~eLe~~~~~~~~~~~~  139 (520)
T PRK12704        107 KREEELEKKEKELEQKQQELEKKEEELEELIEE  139 (520)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444555555555555555444

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=85.76  E-value=6.2  Score=38.39  Aligned_cols=55  Identities=24%  Similarity=0.371  Sum_probs=31.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 027898          150 ATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQ  204 (217)
Q Consensus       150 ~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~  204 (217)
                      ..+.++++.|+.+++..+.++...+.+.+.|+.+.+.+......+..|.+.|+.+
T Consensus       160 ~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q  214 (546)
T PF07888_consen  160 EQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQ  214 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555655555665555555666666666665555555555554433

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.74  E-value=5.2  Score=39.04  Aligned_cols=58  Identities=29%  Similarity=0.355  Sum_probs=45.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898          150 ATLKTKIKKLESECEMKDKEANAA-------KAEAEALKKQSEGFLLEYDRLLADNQHLRNQLES  207 (217)
Q Consensus       150 ~~l~~e~~~Lk~el~~~~kel~~~-------~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~  207 (217)
                      +.++.+++.|..++++...+...|       -.+..+|++|++.++.+||-...|.++++..+..
T Consensus        11 e~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q   75 (772)
T KOG0999|consen   11 EKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQ   75 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457788888888888777765544       2366899999999999999999998888776653

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=85.69  E-value=12  Score=33.72  Aligned_cols=55  Identities=24%  Similarity=0.329  Sum_probs=24.9

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 027898          148 DIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLR  202 (217)
Q Consensus       148 ~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~  202 (217)
                      ++..+++++..++.+++.+++++...+.+++.++...+.+..+=..+.++.+.++
T Consensus       210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~  264 (325)
T PF08317_consen  210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE  264 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555554444444444444444444444444444444444444444333

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=85.41  E-value=15  Score=36.92  Aligned_cols=33  Identities=27%  Similarity=0.459  Sum_probs=23.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027898          151 TLKTKIKKLESECEMKDKEANAAKAEAEALKKQ  183 (217)
Q Consensus       151 ~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQ  183 (217)
                      ++..|+.+|..|++.+++.+...+.+...|+++
T Consensus       549 ~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~  581 (697)
T PF09726_consen  549 QLESELKKLRRELKQKEEQIRELESELQELRKY  581 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667777777777777777777777777765

; GO: 0016021 integral to membrane

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=85.22  E-value=18  Score=31.87  Aligned_cols=25  Identities=12%  Similarity=0.331  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Q 027898          103 MMDRLHHYIRELRLLRKAMEAAKKQ  127 (217)
Q Consensus       103 vI~r~~~li~~l~~l~~~~~a~~kQ  127 (217)
                      .|.||..+=.+...++..+..+...
T Consensus        16 YIekVr~LE~~N~~Le~~i~~~~~~   40 (312)
T PF00038_consen   16 YIEKVRFLEQENKRLESEIEELREK   40 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHhc
Confidence            5677777777777777777765533

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=85.03  E-value=21  Score=32.18  Aligned_cols=86  Identities=19%  Similarity=0.191  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhcCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHH
Q 027898          111 IRELRLLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLE  190 (217)
Q Consensus       111 i~~l~~l~~~~~a~~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~E  190 (217)
                      =-+|..+++.++.++-.....       ..+...+.=+++.|+.++++++..+-.+++++.....+++.+|.....++.+
T Consensus        83 k~~l~evEekyrkAMv~naQL-------DNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e  155 (302)
T PF09738_consen   83 KDSLAEVEEKYRKAMVSNAQL-------DNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREE  155 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHhhh-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566777776555221111       1233344446677778888888888888888877777778888888888888


Q ss_pred             HHHHHHHHHHHHH
Q 027898          191 YDRLLADNQHLRN  203 (217)
Q Consensus       191 YdrL~~e~~~l~~  203 (217)
                      .|.|.++......
T Consensus       156 ~~~Lre~L~~rde  168 (302)
T PF09738_consen  156 LDELREQLKQRDE  168 (302)
T ss_pred             HHHHHHHHHHHHH
Confidence            8777766644433

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=84.91  E-value=9.4  Score=34.46  Aligned_cols=40  Identities=30%  Similarity=0.456  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH
Q 027898          153 KTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYD  192 (217)
Q Consensus       153 ~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYd  192 (217)
                      .+++++|+.+-+..++++...+.+.+.++.+-+..-++|+
T Consensus        63 ~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n  102 (314)
T PF04111_consen   63 LQELEELEKEREELDQELEELEEELEELDEEEEEYWREYN  102 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444444443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PHA02562 46 endonuclease subunit; Provisional

Probab=84.50  E-value=18  Score=34.51  Aligned_cols=38  Identities=16%  Similarity=0.222  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHH
Q 027898          154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEY  191 (217)
Q Consensus       154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EY  191 (217)
                      .++.+++.++...+.++.....+...++...+.++.++
T Consensus       337 ~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~  374 (562)
T PHA02562        337 KKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEF  374 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            34444444444444444443333344444444443333

>PF14235 DUF4337: Domain of unknown function (DUF4337)

Probab=84.27  E-value=8.6  Score=31.33  Aligned_cols=45  Identities=22%  Similarity=0.231  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Q 027898          157 KKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHL  201 (217)
Q Consensus       157 ~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l  201 (217)
                      ..++++++.-+++.++-+++.+.|.+|++..+.++|+....|...
T Consensus        69 ~~~~~~i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d~~~~~~~~f  113 (157)
T PF14235_consen   69 AAYQKKIARYKKEKARYKSEAEELEAKAKEAEAESDHALHHHHRF  113 (157)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcccchh
Confidence            455566666666666667777999999999999999998777653

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=83.89  E-value=13  Score=37.18  Aligned_cols=39  Identities=18%  Similarity=0.307  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898          169 EANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLES  207 (217)
Q Consensus       169 el~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~  207 (217)
                      .++--+.....|+||.+|-.+..+.|..++.-|+.+...
T Consensus       588 q~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~a  626 (786)
T PF05483_consen  588 QMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITA  626 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            333334445677788887777777777777667666554

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=83.85  E-value=22  Score=29.04  Aligned_cols=56  Identities=14%  Similarity=0.311  Sum_probs=40.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898          152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLES  207 (217)
Q Consensus       152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~  207 (217)
                      ..++++.++...+...+++..-.++....+.+++.+..++.++.++++.+.+.++.
T Consensus       128 ~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  183 (191)
T PF04156_consen  128 VEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQE  183 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566667777777777776666666667788888888888888888887776653

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=83.80  E-value=7.3  Score=31.60  Aligned_cols=57  Identities=30%  Similarity=0.379  Sum_probs=28.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--hhHHHHHHHHHHHHHHHHHHhh
Q 027898          150 ATLKTKIKKLESECEMKDKEANAAKAEAEALKKQS--EGFLLEYDRLLADNQHLRNQLE  206 (217)
Q Consensus       150 ~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQa--e~l~~EYdrL~~e~~~l~~~~~  206 (217)
                      ..++.++..|+.++...+.+.+..++++..|.++-  +.+...-..|..|...+.++++
T Consensus        75 ~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~  133 (169)
T PF07106_consen   75 AELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLE  133 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555555555555555545555443  3334444445555555554444

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>COG5374 Uncharacterized conserved protein [Function unknown]

Probab=83.63  E-value=3.1  Score=34.84  Aligned_cols=16  Identities=25%  Similarity=0.320  Sum_probs=7.0

Q ss_pred             HHHHHHHHHHHHHHHH
Q 027898          155 KIKKLESECEMKDKEA  170 (217)
Q Consensus       155 e~~~Lk~el~~~~kel  170 (217)
                      ++++++.+....++++
T Consensus       137 k~D~~eA~~t~lk~~~  152 (192)
T COG5374         137 KIDKMEADSTDLKARL  152 (192)
T ss_pred             chhhhhcchHHHHHHH
Confidence            3444554444443333

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=83.03  E-value=20  Score=27.96  Aligned_cols=32  Identities=31%  Similarity=0.380  Sum_probs=24.4

Q ss_pred             HHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898          176 EAEALKKQSEGFLLEYDRLLADNQHLRNQLES  207 (217)
Q Consensus       176 d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~  207 (217)
                      ....|.++...+..-++.|.+.+.-|-+|++.
T Consensus        99 qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~  130 (132)
T PF07926_consen   99 QKEQLEKELSELEQRIEDLNEQNKLLHDQLES  130 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34577778888888888888887778787764

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]

Probab=83.02  E-value=19  Score=28.73  Aligned_cols=29  Identities=24%  Similarity=0.424  Sum_probs=20.6

Q ss_pred             HHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898          178 EALKKQSEGFLLEYDRLLADNQHLRNQLE  206 (217)
Q Consensus       178 ~aLKkQae~l~~EYdrL~~e~~~l~~~~~  206 (217)
                      ++|.+|.+|+..|=+.|+.+-+.|.++++
T Consensus        41 ~~l~~qv~gi~~eT~~Ll~K~N~L~eDvq   69 (139)
T COG4768          41 KGLTSQVDGITHETEELLHKTNTLAEDVQ   69 (139)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            66777777777777777777777766665

>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit

Probab=82.90  E-value=16  Score=29.34  Aligned_cols=50  Identities=14%  Similarity=0.145  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH-HHHHHH
Q 027898          154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLAD-NQHLRN  203 (217)
Q Consensus       154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e-~~~l~~  203 (217)
                      ..++.|+.|++..+..+++....+..|++.+..+..++.+..++ |..++.
T Consensus        41 ~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~   91 (160)
T PF13094_consen   41 HQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQL   91 (160)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcc
Confidence            34556666666666677777777799999999999999999888 666654

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.26  E-value=24  Score=31.35  Aligned_cols=40  Identities=28%  Similarity=0.464  Sum_probs=18.4

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Q 027898          148 DIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGF  187 (217)
Q Consensus       148 ~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l  187 (217)
                      +++++..+++++..++.+.++++...+.+.+.++++++-+
T Consensus        53 ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~   92 (265)
T COG3883          53 EIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAEL   92 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444444444

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=82.26  E-value=8.4  Score=29.44  Aligned_cols=48  Identities=38%  Similarity=0.511  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhhc
Q 027898          154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLESI  208 (217)
Q Consensus       154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~~  208 (217)
                      ..+..++..+...-.++       .+||+|...+..|=.+|.-|+++|+..+...
T Consensus         8 ~~l~~le~~l~~l~~~~-------~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~   55 (107)
T PF06156_consen    8 DRLDQLEQQLGQLLEEL-------EELKKQLQELLEENARLRIENEHLRERLEEL   55 (107)
T ss_pred             HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666555555       9999999999999999999999999888753

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []

Probab=82.17  E-value=7.2  Score=28.47  Aligned_cols=49  Identities=22%  Similarity=0.359  Sum_probs=24.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027898          152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRN  203 (217)
Q Consensus       152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~  203 (217)
                      +..++++|+.+....+.++....++.   ...++...+.+=+++-+|+.+++
T Consensus         5 l~~~~~~L~~~~~~l~~~i~~~~~~l---~~~~~~~v~~hI~lLheYNeiKD   53 (83)
T PF07061_consen    5 LEAEIQELKEQIEQLEKEISELEAEL---IEDPEKIVKRHIKLLHEYNEIKD   53 (83)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhc---ccCHHHHHHHHHHHHHHHhHHHH
Confidence            33445555555554444443322221   33455555556666666666654

It is known to interact with Swi2, Rhp51 and Swi6 [].

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=82.17  E-value=16  Score=35.60  Aligned_cols=34  Identities=6%  Similarity=0.131  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Q 027898          154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGF  187 (217)
Q Consensus       154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l  187 (217)
                      ++.+.|+.+.+.....+..-+.|+.+|..+....
T Consensus       206 ~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~  239 (546)
T PF07888_consen  206 EERESLKEQLAEARQRIRELEEDIKTLTQKEKEQ  239 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444445555555554333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=82.14  E-value=11  Score=29.12  Aligned_cols=48  Identities=35%  Similarity=0.403  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhhc
Q 027898          154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLESI  208 (217)
Q Consensus       154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~~  208 (217)
                      ..+..++..+...-+++       ..||.++..+-.|=-+|.-|+++|+..+...
T Consensus         8 d~l~~le~~l~~l~~el-------~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~   55 (110)
T PRK13169          8 DALDDLEQNLGVLLKEL-------GALKKQLAELLEENTALRLENDKLRERLEEL   55 (110)
T ss_pred             HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45666666676666666       9999999999999999999999999888853

>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length

Probab=81.98  E-value=13  Score=30.24  Aligned_cols=48  Identities=25%  Similarity=0.336  Sum_probs=27.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHhhHHHHHHHHHHHHH
Q 027898          152 LKTKIKKLESECEMKDKEANAAKAEAEALKK---QSEGFLLEYDRLLADNQ  199 (217)
Q Consensus       152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKk---Qae~l~~EYdrL~~e~~  199 (217)
                      .+.++.+.+.+++..+.+|..+...++.|++   =.+.|++.++.|..++.
T Consensus        18 ~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~   68 (155)
T PF06810_consen   18 PKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK   68 (155)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence            3445555566666666666666666666666   34455555555555555

The function of this family is unknown.; GO: 0005198 structural molecule activity

>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures

Probab=81.94  E-value=9.6  Score=30.52  Aligned_cols=73  Identities=18%  Similarity=0.324  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 027898           92 SLMGFLLFLSLMMDRLHHYIRELRLLRKAMEAAKKQTRSFEDGKNDNVDERKGLGDDIATLKTKIKKLESECEMKDKEA  170 (217)
Q Consensus        92 YLtGF~LFL~lvI~r~~~li~~l~~l~~~~~a~~kQa~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~Lk~el~~~~kel  170 (217)
                      ---||.+.|..+|--+.   ++..++++++.+++..--|-+.   ...+|.+.......++.+++.-|+.++++.+.++
T Consensus        38 lsLgl~~LLLV~IcVig---sQ~~qlq~dl~tLretfsNFss---st~aEvqaL~S~G~sl~~kVtSLea~lEkqqQeL  110 (138)
T PF03954_consen   38 LSLGLSLLLLVVICVIG---SQNSQLQRDLRTLRETFSNFSS---STLAEVQALSSQGGSLQDKVTSLEAKLEKQQQEL  110 (138)
T ss_pred             HHHHHHHHHHHHHHhhc---CccHHHHHHHHHHHHHHhcccH---HHHHHHHHHHhccccHHhHcccHHHHHHHHHHHH
Confidence            44577776665554333   3456677777776644332221   1223333333333446677777888888887777

They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane

>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus

Probab=81.77  E-value=5.6  Score=36.39  Aligned_cols=54  Identities=19%  Similarity=0.148  Sum_probs=30.4

Q ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhHhhHHHHHHH
Q 027898          140 DERKGLGDDIATLKTKIKKLESECEMKDKEANA--AKAEAEALKKQSEGFLLEYDR  193 (217)
Q Consensus       140 ~~~~~~~~~~~~l~~e~~~Lk~el~~~~kel~~--~~~d~~aLKkQae~l~~EYdr  193 (217)
                      ++.-.+..||.+|++|+++|+.+++..+.+..+  ...+.+++..|++.+.+-.|+
T Consensus        32 ~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~dv~~d~i~Kimnk   87 (420)
T PF07407_consen   32 DENFALRMENHSLKKENNDLKIEVERLENEMLRSHVCEDVETNDVIYDKIVKIMNK   87 (420)
T ss_pred             hhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            444456666677777777777777766665544  233344444444444444444

Members of this family are typically of around 420 residues in length. The function of this family is unknown.

>PF14584 DUF4446: Protein of unknown function (DUF4446)

Probab=81.55  E-value=24  Score=28.55  Aligned_cols=34  Identities=21%  Similarity=0.191  Sum_probs=20.3

Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 027898           92 SLMGFLLFLS-LMMDRLHHYIRELRLLRKAMEAAK  125 (217)
Q Consensus        92 YLtGF~LFL~-lvI~r~~~li~~l~~l~~~~~a~~  125 (217)
                      ||..+.+.+. +.+-.+..+..++.+++..++.++
T Consensus         2 ~i~i~l~~l~iilli~~~~~~~kl~kl~r~Y~~lm   36 (151)
T PF14584_consen    2 YIIIGLLVLVIILLILIIILNIKLRKLKRRYDALM   36 (151)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3433333333 334455566667788888888877

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=81.21  E-value=29  Score=31.00  Aligned_cols=56  Identities=21%  Similarity=0.233  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhhcc
Q 027898          154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLESID  209 (217)
Q Consensus       154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~~~  209 (217)
                      ...+++..++..++-.+.--+..+..-|+|.+.|+.|--|+..|.++.|.....+|
T Consensus        81 k~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~  136 (307)
T PF10481_consen   81 KTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGD  136 (307)
T ss_pred             HHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            34456677777777777777778889999999999999999999998887666444

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PHA02562 46 endonuclease subunit; Provisional

Probab=81.15  E-value=17  Score=34.59  Aligned_cols=52  Identities=21%  Similarity=0.149  Sum_probs=23.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027898          152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRN  203 (217)
Q Consensus       152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~  203 (217)
                      +..++...+..++....+....+.+++.|......+..+..++.++...++.
T Consensus       342 l~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~  393 (562)
T PHA02562        342 LKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVK  393 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444444444444444444433

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=81.08  E-value=3.8  Score=37.23  Aligned_cols=33  Identities=21%  Similarity=0.089  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 027898           91 ASLMGFLLFLSL-MMDRLHHYIRELRLLRKAMEA  123 (217)
Q Consensus        91 ~YLtGF~LFL~l-vI~r~~~li~~l~~l~~~~~a  123 (217)
                      +...+..|+.|. .+...+.+...+..++..++.
T Consensus       192 ~S~Aa~~Lc~WV~A~~~Y~~v~~~V~P~~~~l~~  225 (344)
T PF12777_consen  192 ASKAAGSLCKWVRAMVKYYEVNKEVEPKRQKLEE  225 (344)
T ss_dssp             H-TTHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_pred             HhhcchHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            344555566663 344455555555555555443

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus

Probab=80.86  E-value=10  Score=34.70  Aligned_cols=71  Identities=18%  Similarity=0.155  Sum_probs=49.2

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhHhhHHHHHHHHHHHHHHHHHHhhhccccCCCcC
Q 027898          145 LGDDIATLKTKIKKLESECEMKDKEANAAKAEAEA--LKKQSEGFLLEYDRLLADNQHLRNQLESIDHSDSKKD  216 (217)
Q Consensus       145 ~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~a--LKkQae~l~~EYdrL~~e~~~l~~~~~~~~~~~~KK~  216 (217)
                      ..+|+..|++|+..||+|.++++.++++-++|...  +-+..+-.+.-||++.+=-++.|+... +.+-+.|++
T Consensus        30 ~~~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~dv~~d~i~Kimnk~Re~vl-fq~d~~~ld  102 (420)
T PF07407_consen   30 SIDENFALRMENHSLKKENNDLKIEVERLENEMLRSHVCEDVETNDVIYDKIVKIMNKMRELVL-FQRDDLKLD  102 (420)
T ss_pred             chhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhh-hcccccccc
Confidence            34567789999999999999999999888887764  333344457788888777777665332 223344544

Members of this family are typically of around 420 residues in length. The function of this family is unknown.

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=80.71  E-value=48  Score=32.77  Aligned_cols=110  Identities=20%  Similarity=0.266  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCc-hhhh-------hhhhhhhhhhHH----------
Q 027898           93 LMGFLLFLSLMMDRLHHYIRELRLLRKAMEAAKKQTRSFEDGKNDN-VDER-------KGLGDDIATLKT----------  154 (217)
Q Consensus        93 LtGF~LFL~lvI~r~~~li~~l~~l~~~~~a~~kQa~~~~~~~~~~-~~~~-------~~~~~~~~~l~~----------  154 (217)
                      .++=.==.++|+.=+-.--..+..++...+.+.-|++.+..+.... .+..       ...+++|..|..          
T Consensus       230 ~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~  309 (629)
T KOG0963|consen  230 VAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLV  309 (629)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444555665555555566667777777777766664322111 1110       012223333333          


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027898          155 -KIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRN  203 (217)
Q Consensus       155 -e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~  203 (217)
                       +.+..+.+|...++++++....++.|+++.++. +.||.+..|..-|+.
T Consensus       310 ~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ELsiLk~  358 (629)
T KOG0963|consen  310 EEREKHKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKKELSILKA  358 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHHH
Confidence             334455556666666666666778888888777 778888777776653

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=80.70  E-value=18  Score=25.71  Aligned_cols=22  Identities=14%  Similarity=0.250  Sum_probs=9.0

Q ss_pred             HhHhhHHHHHHHHHHHHHHHHH
Q 027898          182 KQSEGFLLEYDRLLADNQHLRN  203 (217)
Q Consensus       182 kQae~l~~EYdrL~~e~~~l~~  203 (217)
                      .+-+.|..|..+|.++++.-+.
T Consensus        39 ~e~~~L~~en~~L~~e~~~~~~   60 (72)
T PF06005_consen   39 EENEELKEENEQLKQERNAWQE   60 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444443333

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=80.18  E-value=31  Score=31.20  Aligned_cols=99  Identities=17%  Similarity=0.253  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhcCCC-Cchhhhh---hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 027898          109 HYIRELRLLRKAMEAAKKQTRSFEDGKN-DNVDERK---GLGDDIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQS  184 (217)
Q Consensus       109 ~li~~l~~l~~~~~a~~kQa~~~~~~~~-~~~~~~~---~~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQa  184 (217)
                      .+=.++-.+++....++.++........ ....+..   .-..+..+-+.++..|..+|..+..+....+.++..|..|.
T Consensus       164 ~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqi  243 (306)
T PF04849_consen  164 ALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQI  243 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555566666666655544432110 0001111   11123334456788889999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhh
Q 027898          185 EGFLLEYDRLLADNQHLRNQLES  207 (217)
Q Consensus       185 e~l~~EYdrL~~e~~~l~~~~~~  207 (217)
                      -.++...-.+.-|+++++..+..
T Consensus       244 vdlQ~r~k~~~~EnEeL~q~L~~  266 (306)
T PF04849_consen  244 VDLQQRCKQLAAENEELQQHLQA  266 (306)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHH
Confidence            99999999999999888887764

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	217
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	3e-04

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 39.2 bits (90), Expect = 3e-04
 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 4/33 (12%)

Query: 153 KTKIKKLESECEMKDKEANAAKAEAEALKKQSE 185
           K  +KKL++   +K    ++A   A A+K   E
Sbjct: 19  KQALKKLQA--SLKLYADDSAP--ALAIKATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	217
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	95.1
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	95.08
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	94.25
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	93.8
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	93.16
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	92.8
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	92.39
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	91.16
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	90.97
3qh9_A	81	Liprin-beta-2; coiled-coil, dimerization, structur	90.62
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	90.51
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	89.04
3a7o_A	75	Autophagy protein 16; coiled-coil, coiled coil, cy	88.76
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	88.57
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	87.73
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	87.22
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	85.92
3cl3_D	130	NF-kappa-B essential modulator; death effector dom	85.27
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	84.69
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	84.35
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	83.31
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	82.72
4h22_A	103	Leucine-rich repeat flightless-interacting protei;	81.76
3viq_B	85	Mating-type switching protein SWI5; recombination	81.19
4dzn_A	33	Coiled-coil peptide CC-PIL; de novo protein; HET:	80.5
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	80.38
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	80.02

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=95.10  E-value=0.39  Score=33.65  Aligned_cols=55  Identities=18%  Similarity=0.240  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhhc
Q 027898          154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLESI  208 (217)
Q Consensus       154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~~  208 (217)
                      +..+.++..++..++....++.++.+|++...+++.++|+..+.....+.+|...
T Consensus        20 ~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea   74 (81)
T 1ic2_A           20 DRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELA   74 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777778888888888888999999999999999999999999999888864

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=95.08  E-value=0.66  Score=35.92  Aligned_cols=47  Identities=19%  Similarity=0.209  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898          153 KTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE  206 (217)
Q Consensus       153 ~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~  206 (217)
                      .+++..|+.++...+.++       +.++++.+.+.++++.|..+..+|+..+.
T Consensus        88 ~kE~~~lK~el~~~~~k~-------e~~~~e~~~l~~~~~~l~~~~~~le~~~~  134 (138)
T 3hnw_A           88 DKEIYDLKHELIAAQIKA-------ESSAKEIKELKSEINKYQKNIVKLETELN  134 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555444444       77777777777777777777777766655

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=94.25  E-value=0.83  Score=33.28  Aligned_cols=54  Identities=15%  Similarity=0.258  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898          154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLES  207 (217)
Q Consensus       154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~  207 (217)
                      ...+.++.+++..+....+.+.++.+|++...+++.++|+..+....++.++..
T Consensus        23 d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~   76 (101)
T 3u59_A           23 DRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQ   76 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445666666766667777777788999999999999999988888877776654

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=93.80  E-value=0.45  Score=36.87  Aligned_cols=49  Identities=24%  Similarity=0.215  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898          158 KLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE  206 (217)
Q Consensus       158 ~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~  206 (217)
                      .|+.+++.+++++..-+.++..++-+.+++.++...|.++++.|+.+..
T Consensus        79 ~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~  127 (138)
T 3hnw_A           79 SLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIV  127 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333455555666666666666666655555443

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=93.16  E-value=1.7  Score=31.71  Aligned_cols=54  Identities=13%  Similarity=0.136  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898          154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLES  207 (217)
Q Consensus       154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~  207 (217)
                      ...+.++.+++..+....+++.++.+|.+...++..+.|+..+.....+.++..
T Consensus        23 drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee   76 (101)
T 3u1c_A           23 DRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLF   76 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666666666677777777999999999999999888887777766654

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=92.80  E-value=0.23  Score=32.32  Aligned_cols=32  Identities=22%  Similarity=0.435  Sum_probs=22.4

Q ss_pred             HHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898          176 EAEALKKQSEGFLLEYDRLLADNQHLRNQLES  207 (217)
Q Consensus       176 d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~  207 (217)
                      |+++||..-+.|+..|+.|.++++.+++++..
T Consensus        20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~   51 (53)
T 2yy0_A           20 EIELLRLELAEMKEKYEAIVEENKKLKAKLAQ   51 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            44666666666777777777777777777663

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=92.39  E-value=0.92  Score=35.74  Aligned_cols=55  Identities=13%  Similarity=0.207  Sum_probs=42.4

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 027898          148 DIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLR  202 (217)
Q Consensus       148 ~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~  202 (217)
                      +...+..++..++.+++.+.+.+..-+.+..+|.-|..-++..-.+|.+||..|=
T Consensus        76 El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV  130 (152)
T 3a7p_A           76 ELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLV  130 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455667888888888888888877788888888888888777777777776653

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=91.16  E-value=2.9  Score=29.48  Aligned_cols=50  Identities=18%  Similarity=0.275  Sum_probs=32.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898          150 ATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE  206 (217)
Q Consensus       150 ~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~  206 (217)
                      +-+..++++||.+-.....+.       +.++...+.+..+..+|.+|++.-++.+.
T Consensus        23 ~lLqmEieELKekN~~L~~e~-------~e~~~~~~~L~~en~qLk~E~~~wq~Rl~   72 (81)
T 2jee_A           23 TLLQMEIEELKEKNNSLSQEV-------QNAQHQREELERENNHLKEQQNGWQERLQ   72 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------HHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555554444433       66777777788888888888877666655

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=90.97  E-value=2.5  Score=30.58  Aligned_cols=52  Identities=19%  Similarity=0.342  Sum_probs=29.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027898          152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRN  203 (217)
Q Consensus       152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~  203 (217)
                      +-.++++|+++=+..+.+|...+.+...|..|-+..-++|+.+.-+.-..++
T Consensus        23 L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~d   74 (96)
T 3q8t_A           23 LIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDD   74 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            4455566666666666666555555566666666666666544444433333

>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}

Probab=90.62  E-value=1.6  Score=30.68  Aligned_cols=53  Identities=30%  Similarity=0.317  Sum_probs=43.7

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Q 027898          145 LGDDIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLAD  197 (217)
Q Consensus       145 ~~~~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e  197 (217)
                      ..-++..++-.+++++.|=-+.++.|++.+.++..|+.|.++=..|..||.++
T Consensus        24 L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~   76 (81)
T 3qh9_A           24 LLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQ   76 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            44456667778888888888888899888899999999999999988888655

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=90.51  E-value=1.1  Score=45.32  Aligned_cols=37  Identities=11%  Similarity=0.086  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 027898          168 KEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQ  204 (217)
Q Consensus       168 kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~  204 (217)
                      ..+...+.+.+.++++.+.+.+|++.+.+++++++++
T Consensus       984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~ 1020 (1080)
T 2dfs_A          984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHE 1020 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444445555555555555555555555444433

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=89.04  E-value=4.6  Score=45.43  Aligned_cols=54  Identities=17%  Similarity=0.314  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898          154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLES  207 (217)
Q Consensus       154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~  207 (217)
                      +++++++.+++..++++..+++.+..+..+.+.++.+|+....|.+.++.+.+.
T Consensus      2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~ 2067 (3245)
T 3vkg_A         2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSK 2067 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677777888888888888888889999999999999998888888777653

>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}

Probab=88.76  E-value=4.3  Score=27.84  Aligned_cols=56  Identities=21%  Similarity=0.186  Sum_probs=36.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhh
Q 027898          152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLES  207 (217)
Q Consensus       152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~~  207 (217)
                      +..-+..|+++|+.++.+|..-+.-..-=-|-+|.|+.|.=.+.=|++-|+++++.
T Consensus        16 ~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~   71 (75)
T 3a7o_A           16 LLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSD   71 (75)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHH
Confidence            44567788888888888885554333333344666666666666677788887763

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=88.57  E-value=6.3  Score=29.58  Aligned_cols=25  Identities=20%  Similarity=0.239  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhh
Q 027898          105 DRLHHYIRELRLLRKAMEAAKKQTR  129 (217)
Q Consensus       105 ~r~~~li~~l~~l~~~~~a~~kQa~  129 (217)
                      +..+.+=.+|-..++.+.....||.
T Consensus        25 N~T~lLq~qLTqAQe~l~~~eaQAa   49 (121)
T 3mq7_A           25 NVTHLLQQELTEAQKGFQDVEAQAA   49 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455555555555555444433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=87.73  E-value=13  Score=34.17  Aligned_cols=51  Identities=22%  Similarity=0.244  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898          156 IKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE  206 (217)
Q Consensus       156 ~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~  206 (217)
                      .++.+++++++.++++..+++.+.++++.+...+...++.+|.+.++.++.
T Consensus       525 ~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~  575 (597)
T 3oja_B          525 TQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVK  575 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence            344444454555555555555566666666666666666666555544433

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=87.22  E-value=7.1  Score=32.61  Aligned_cols=52  Identities=17%  Similarity=0.203  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898          155 KIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE  206 (217)
Q Consensus       155 e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~  206 (217)
                      +.+.|.++++..++++...+.+...+-.+.+.++.+.+.+.++...++..+.
T Consensus        91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~  142 (256)
T 3na7_A           91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLAL  142 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555555555555556666666666666555555555544

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=85.92  E-value=6.6  Score=39.80  Aligned_cols=29  Identities=17%  Similarity=0.273  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 027898          156 IKKLESECEMKDKEANAAKAEAEALKKQS  184 (217)
Q Consensus       156 ~~~Lk~el~~~~kel~~~~~d~~aLKkQa  184 (217)
                      +..|+.+++..++++.+..++.+.++...
T Consensus       986 v~~L~~e~~~l~~~~~~~~ke~~~lee~~ 1014 (1080)
T 2dfs_A          986 VLSLQEEIAKLRKELHQTQTEKKTIEEWA 1014 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444443

>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}

Probab=85.27  E-value=5.2  Score=30.48  Aligned_cols=53  Identities=9%  Similarity=0.241  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHH-HHHhh
Q 027898          154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHL-RNQLE  206 (217)
Q Consensus       154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l-~~~~~  206 (217)
                      -.+++|+-+.++.+.+|+-.+.-...=|.....|+..|+.|..||++. +..+.
T Consensus        55 ~~~d~L~lQ~esmeaalkmEr~~~~eEKrkLAqLQ~AY~~LfqeYd~~lK~~~~  108 (130)
T 3cl3_D           55 VQVDQLRMQGQSVEAALRMERQAASEEKRKLAQLQVAYHQLFQEYDNHIKSSVV  108 (130)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356677777777777776666656667889999999999999999874 44443

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=84.69  E-value=14  Score=30.82  Aligned_cols=19  Identities=21%  Similarity=0.057  Sum_probs=7.0

Q ss_pred             HHHHHHHHHhHhhHHHHHH
Q 027898          174 KAEAEALKKQSEGFLLEYD  192 (217)
Q Consensus       174 ~~d~~aLKkQae~l~~EYd  192 (217)
                      +..++.++...+....++|
T Consensus       131 ~~~l~~~~~~l~~~~~~~~  149 (256)
T 3na7_A          131 KKEMLELEKLALELESLVE  149 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=84.35  E-value=8.2  Score=30.27  Aligned_cols=17  Identities=18%  Similarity=0.255  Sum_probs=8.3

Q ss_pred             HHHHHhHhhHHHHHHHH
Q 027898          178 EALKKQSEGFLLEYDRL  194 (217)
Q Consensus       178 ~aLKkQae~l~~EYdrL  194 (217)
                      ..+......+++|++.|
T Consensus       113 n~lE~kl~kLq~EN~~L  129 (152)
T 3a7p_A          113 NVLQQKLSDLKKEHSQL  129 (152)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44445555555555433

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=83.31  E-value=11  Score=27.18  Aligned_cols=53  Identities=21%  Similarity=0.224  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhh
Q 027898          154 TKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQLE  206 (217)
Q Consensus       154 ~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~~  206 (217)
                      .+++.++.+.+..+.+=..--.+..+++-|.-.++.+-+.+...+...+.++.
T Consensus        39 ~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLd   91 (96)
T 3q8t_A           39 ENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLD   91 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444443333333233334445555555555555555555544444444

>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}

Probab=81.76  E-value=8.4  Score=28.29  Aligned_cols=47  Identities=17%  Similarity=0.246  Sum_probs=25.0

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHH
Q 027898          148 DIATLKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRL  194 (217)
Q Consensus       148 ~~~~l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL  194 (217)
                      +++.++..+++++..+....++.+-..++++.+|.+...|+.+++-|
T Consensus        31 qVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~l   77 (103)
T 4h22_A           31 QVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEV   77 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555555555555555444445566665555554444443

>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*

Probab=81.19  E-value=4.2  Score=28.92  Aligned_cols=50  Identities=18%  Similarity=0.265  Sum_probs=25.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Q 027898          152 LKTKIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRN  203 (217)
Q Consensus       152 l~~e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~  203 (217)
                      +..+++.|+.++...++++..+++...  ...++...+.|=+++-+|+.+++
T Consensus         6 L~~~i~~L~~q~~~L~~ei~~~~a~L~--~~~~~~~~~~hI~~Lh~YNeiKD   55 (85)
T 3viq_B            6 LESRVHLLEQQKEQLESSLQDALAKLK--NRDAKQTVQKHIDLLHTYNEIRD   55 (85)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCS--SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHHHhHHHH
Confidence            556666666666666666633322110  00133334555555666666654

>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B

Probab=80.50  E-value=3.6  Score=23.30  Aligned_cols=21  Identities=33%  Similarity=0.313  Sum_probs=9.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHH
Q 027898          150 ATLKTKIKKLESECEMKDKEA  170 (217)
Q Consensus       150 ~~l~~e~~~Lk~el~~~~kel  170 (217)
                      ..+++|+..|++|+...+=++
T Consensus         5 aalkqeiaalkkeiaalkfei   25 (33)
T 4dzn_A            5 AALKQEIAALKKEIAALKFEI   25 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555544443333

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=80.38  E-value=13  Score=26.44  Aligned_cols=24  Identities=21%  Similarity=0.347  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Q 027898          104 MDRLHHYIRELRLLRKAMEAAKKQ  127 (217)
Q Consensus       104 I~r~~~li~~l~~l~~~~~a~~kQ  127 (217)
                      =+|+.++|...-.++.....+..+
T Consensus        15 NdRlAsyIdKVR~LEqqN~~Le~~   38 (93)
T 3s4r_A           15 NDRFANLIDKVRFLEQQNKILLAE   38 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357777777777777666655433

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=80.02  E-value=12  Score=25.76  Aligned_cols=51  Identities=22%  Similarity=0.190  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHh
Q 027898          155 KIKKLESECEMKDKEANAAKAEAEALKKQSEGFLLEYDRLLADNQHLRNQL  205 (217)
Q Consensus       155 e~~~Lk~el~~~~kel~~~~~d~~aLKkQae~l~~EYdrL~~e~~~l~~~~  205 (217)
                      ++..|+.+.+.....+..++.++....+.+.....+++.|....+.+.+++
T Consensus         7 Km~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~el   57 (81)
T 1ic2_A            7 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDEL   57 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444444444444444444444444444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00