Citrus Sinensis ID: 027910

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------
Protein Sequence
MAQSVSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAAN
Secondary Structure (PSIPRED)
cccccccccccccEEEEEEEcccccHHHHHHHHHHHHHHHccccccEEEEEEccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHccccccHHHHHHHHHHHHcccccccEEEEccEEEccccccHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEEEEEcccccHHHHcHHHHHHHHHHccccccEEEEEEEEEcccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHccccEcccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHccHHHHHHHHHHHHHHHcccccEEEEEEccEEEEcccccHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
maqsvsssagkkliridvssdtvcpwcfvgkrnlDKAIAsskdqydfeirwhpfflnpsapkegvnkkdfyenkfgsqnqGIIARMTEVFRGLGLeynmsgltgntldSHRLLYLAGQQGLDKQHNLAEELFLGYFtqgkyigdkEFLVECARKVGVegaaeflddpnsglnEVHEELKKYSanisgvphfvlngkhelsggqppEVYLRAFQVAAN
Flexible Loop (DISEMBL)
maqsvsssagkkliridvssdtvcPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENkfgsqnqgiIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAaeflddpnsgLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAAN
Low Complexity Region (SEG)
MAQSVSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAAN
Disordered region (IsUnstruct)
************LIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPS*****VNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDD****L*EVHEELKKYSANISGVPHFVLNGK**********VYLR*******
Disordered Region (DISOPRED)
***************IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAA*
Disordered Region (DISEMBL)
**********KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAAN
Disordered Region (DISPRO)
***********KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAAN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAQSVSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAAN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	217	2.2.26 [Sep-21-2011]
P39598	200	Uncharacterized protein Y	yes	no	0.838	0.91	0.276	4e-12

>sp|P39598|YWBO_BACSU Uncharacterized protein YwbO OS=Bacillus subtilis (strain 168) GN=ywbO PE=4 SV=1

 Score = 71.6 bits (174), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 93/206 (45%), Gaps = 24/206 (11%)

Query: 14  IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYEN 73
           + I V SD VCP+CFVGK   ++AI       D E+ W PF L PS P   ++  +    
Sbjct: 3   VHIKVYSDYVCPFCFVGKAAFEEAIKGK----DVEVEWMPFELRPS-PSPQLDPVNDPSK 57

Query: 74  KFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFL 133
           ++  Q    I  M E    LG+E N   ++ +             +  +K H     +F 
Sbjct: 58  QYMWQTS--IQPMAE---KLGVEINFPNVSPHPYTDLAFEGFHFAKEYNKGHEYNTRVFQ 112

Query: 134 GYFTQGKYIGDKEFLVECARKVGVEGAA--------EFLDDPNSGLNEVHEELKKYSANI 185
            +F + + IGD + L + A +VG++GA+         + D     L   +EE     A+I
Sbjct: 113 AFFQEDQNIGDIDILTKLAEEVGLDGASFKSALETRTYQDVQRQALKHAYEE-----ADI 167

Query: 186 SGVPHFVLNGKHELSGGQPPEVYLRA 211
           + VP F++ G   + G    +V+ +A
Sbjct: 168 TAVPTFII-GDTVIPGAAGKDVFEKA 192

Bacillus subtilis (strain 168) (taxid: 224308)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
298204452	250	unnamed protein product [Vitis vinifera]	0.995	0.864	0.810	1e-103
225451823	217	PREDICTED: uncharacterized protein ywbO	0.995	0.995	0.810	1e-103
224120676	217	predicted protein [Populus trichocarpa]	0.995	0.995	0.782	1e-101
255569918	217	protein disulfide oxidoreductase, putati	1.0	1.0	0.774	1e-100
351725231	213	uncharacterized protein LOC100527784 [Gl	0.981	1.0	0.718	3e-90
449476397	259	PREDICTED: uncharacterized protein YwbO-	0.990	0.830	0.726	4e-90
449438729	218	PREDICTED: uncharacterized protein YwbO-	0.990	0.986	0.722	7e-90
242033733	241	hypothetical protein SORBIDRAFT_01g01511	0.990	0.892	0.699	4e-88
356526550	213	PREDICTED: uncharacterized protein ywbO-	0.981	1.0	0.713	4e-88
357502469	217	DSBA-like thioredoxin domain containing	1.0	1.0	0.686	6e-88

>gi|298204452|emb|CBI16932.3| unnamed protein product [Vitis vinifera]

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 175/216 (81%), Positives = 201/216 (93%)

Query: 1   MAQSVSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSA 60
           MAQS  SS GKKLI+ID+SSDTVCPWCFVGKRNLDKAIASS+DQ+DFE+RWHPFFLNPSA
Sbjct: 34  MAQSEGSSTGKKLIQIDISSDTVCPWCFVGKRNLDKAIASSQDQFDFELRWHPFFLNPSA 93

Query: 61  PKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQG 120
           PKEG+NK +FY+NKFG +++ I ARMTEVFRGLGL+YN+SGLTGNTLDSHRL+Y AG+QG
Sbjct: 94  PKEGINKIEFYKNKFGPRSEQIAARMTEVFRGLGLQYNLSGLTGNTLDSHRLIYFAGKQG 153

Query: 121 LDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKK 180
           LDKQHNL EEL LGYFTQGKYIGD+EFLVE A+KVGVEGAAEFL DPN+GLNEV+EE KK
Sbjct: 154 LDKQHNLVEELCLGYFTQGKYIGDREFLVESAKKVGVEGAAEFLQDPNNGLNEVNEEFKK 213

Query: 181 YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAA 216
           YSA++SGVP++V+NGK +LSGGQPPEV+LRAFQ AA
Sbjct: 214 YSAHLSGVPYYVINGKQQLSGGQPPEVFLRAFQAAA 249

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451823|ref|XP_002281555.1| PREDICTED: uncharacterized protein ywbO [Vitis vinifera]

 Score =  378 bits (971), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 175/216 (81%), Positives = 201/216 (93%)

Query: 1   MAQSVSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSA 60
           MAQS  SS GKKLI+ID+SSDTVCPWCFVGKRNLDKAIASS+DQ+DFE+RWHPFFLNPSA
Sbjct: 1   MAQSEGSSTGKKLIQIDISSDTVCPWCFVGKRNLDKAIASSQDQFDFELRWHPFFLNPSA 60

Query: 61  PKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQG 120
           PKEG+NK +FY+NKFG +++ I ARMTEVFRGLGL+YN+SGLTGNTLDSHRL+Y AG+QG
Sbjct: 61  PKEGINKIEFYKNKFGPRSEQIAARMTEVFRGLGLQYNLSGLTGNTLDSHRLIYFAGKQG 120

Query: 121 LDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKK 180
           LDKQHNL EEL LGYFTQGKYIGD+EFLVE A+KVGVEGAAEFL DPN+GLNEV+EE KK
Sbjct: 121 LDKQHNLVEELCLGYFTQGKYIGDREFLVESAKKVGVEGAAEFLQDPNNGLNEVNEEFKK 180

Query: 181 YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAA 216
           YSA++SGVP++V+NGK +LSGGQPPEV+LRAFQ AA
Sbjct: 181 YSAHLSGVPYYVINGKQQLSGGQPPEVFLRAFQAAA 216

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120676|ref|XP_002330924.1| predicted protein [Populus trichocarpa] gi|222873118|gb|EEF10249.1| predicted protein [Populus trichocarpa]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 169/216 (78%), Positives = 203/216 (93%)

Query: 1   MAQSVSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSA 60
           MA+SVS++ GKKL+RIDVSSDTVCPWCFVGKRNLDKAIA+SKD++DFEI+WHPFFLNPSA
Sbjct: 1   MAESVSNNTGKKLVRIDVSSDTVCPWCFVGKRNLDKAIAASKDRFDFEIKWHPFFLNPSA 60

Query: 61  PKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQG 120
           PKEGVNK DFY  KFGS+ +GI+ARMTE+F+GLGLEYN+SGLTGNTLDSHRL+  AGQQG
Sbjct: 61  PKEGVNKLDFYREKFGSRAEGILARMTEIFKGLGLEYNLSGLTGNTLDSHRLINFAGQQG 120

Query: 121 LDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKK 180
           LDKQH LAEELFLGYFTQ KY+GD+EFL+ECA+KVGVEGAA+FL+DPN+G+ EV+EEL+K
Sbjct: 121 LDKQHKLAEELFLGYFTQAKYVGDREFLLECAQKVGVEGAAKFLEDPNNGVKEVNEELEK 180

Query: 181 YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAA 216
           YSA+I+GVP +V+NGK +LSGGQPPEV+ +AF+V+A
Sbjct: 181 YSAHITGVPFYVINGKQKLSGGQPPEVFQKAFEVSA 216

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569918|ref|XP_002525922.1| protein disulfide oxidoreductase, putative [Ricinus communis] gi|223534751|gb|EEF36442.1| protein disulfide oxidoreductase, putative [Ricinus communis]

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 168/217 (77%), Positives = 198/217 (91%)

Query: 1   MAQSVSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSA 60
           M++S++SS+GKKLIRIDVSSDTVCPWCFVGKRNLDKA+A+SKD++DFEI+WHPFFLNPSA
Sbjct: 1   MSESITSSSGKKLIRIDVSSDTVCPWCFVGKRNLDKAVAASKDRFDFEIKWHPFFLNPSA 60

Query: 61  PKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQG 120
           PKEGVNK  +Y  KFGS+  GIIARMTEVFRGLGLEYN+SGLTGNTLDSHRL+  AGQQG
Sbjct: 61  PKEGVNKLQYYREKFGSRTDGIIARMTEVFRGLGLEYNISGLTGNTLDSHRLINFAGQQG 120

Query: 121 LDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKK 180
           LDKQH L EELFLGYFTQ KYIGD+EFL+ECA + G+ GAAEFL DPN+G+ EV E+L+K
Sbjct: 121 LDKQHKLVEELFLGYFTQAKYIGDREFLLECAAEAGLWGAAEFLADPNNGVQEVSEDLEK 180

Query: 181 YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAAN 217
           YS NI+GVP++V+NGKH+LSGGQP EV+LRAF+VAA+
Sbjct: 181 YSTNITGVPYYVINGKHKLSGGQPTEVFLRAFEVAAS 217

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725231|ref|NP_001237341.1| uncharacterized protein LOC100527784 [Glycine max] gi|255633202|gb|ACU16957.1| unknown [Glycine max]

 Score =  337 bits (863), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 153/213 (71%), Positives = 188/213 (88%)

Query: 5   VSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEG 64
           +S ++ KKL+RIDVSSDTVCPWCFVGK+NLDKAIA+SKD+Y+FEI WHPF L+P APKEG
Sbjct: 1   MSGTSEKKLVRIDVSSDTVCPWCFVGKKNLDKAIAASKDKYNFEIIWHPFQLSPDAPKEG 60

Query: 65  VNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQ 124
           ++K+++Y  KFGSQ++ + ARM+EVF+ +GLEY++SGLTGNT+DSHRL+Y A QQGLDKQ
Sbjct: 61  IDKREYYRRKFGSQSERMEARMSEVFKNVGLEYSLSGLTGNTIDSHRLIYFARQQGLDKQ 120

Query: 125 HNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSAN 184
           H+L EEL +GYFTQGKYIGD +FL+E A KVG+EGA EFL DPN+GL EV EELK YS N
Sbjct: 121 HDLVEELNIGYFTQGKYIGDHKFLLESAAKVGIEGAEEFLKDPNNGLKEVEEELKTYSGN 180

Query: 185 ISGVPHFVLNGKHELSGGQPPEVYLRAFQVAAN 217
           ISGVP++V+NG H+LSGGQPPEV+LRAFQVA N
Sbjct: 181 ISGVPYYVINGNHKLSGGQPPEVFLRAFQVATN 213

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476397|ref|XP_004154726.1| PREDICTED: uncharacterized protein YwbO-like [Cucumis sativus]

 Score =  336 bits (861), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 157/216 (72%), Positives = 190/216 (87%), Gaps = 1/216 (0%)

Query: 1   MAQSVSS-SAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPS 59
           MA+SV S +  KKLI+ID+SSDTVCPWCFVGK+NLDKAI++S+DQYDFE+ WHPF LNP+
Sbjct: 42  MAESVGSRNMDKKLIQIDISSDTVCPWCFVGKKNLDKAISASQDQYDFELNWHPFQLNPT 101

Query: 60  APKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQ 119
           APKEGV K ++Y +KFG Q++ + ARM EVFRGLGL+Y+ SGLTGNTL+SH+L+YLAGQQ
Sbjct: 102 APKEGVVKTEYYRSKFGIQSEQMEARMAEVFRGLGLDYDTSGLTGNTLESHKLIYLAGQQ 161

Query: 120 GLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELK 179
           GL KQH+L EEL LGYFTQGKYIGD++FL+ECARK GVEGAAEFL+  +SG+ EV EEL+
Sbjct: 162 GLGKQHDLVEELCLGYFTQGKYIGDRDFLLECARKAGVEGAAEFLETADSGVKEVKEELE 221

Query: 180 KYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVA 215
           KYS  ISGVP +V+NGKH+LSG QPPEV+LRAFQVA
Sbjct: 222 KYSGKISGVPFYVINGKHKLSGAQPPEVFLRAFQVA 257

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438729|ref|XP_004137140.1| PREDICTED: uncharacterized protein YwbO-like [Cucumis sativus]

 Score =  335 bits (859), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 156/216 (72%), Positives = 190/216 (87%), Gaps = 1/216 (0%)

Query: 1   MAQSVSS-SAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPS 59
           MA+SV S +  KKLI+ID+SSDTVCPWCFVGK+NLDKAI++S+DQYDFE+ WHPF LNP+
Sbjct: 1   MAESVGSRNMDKKLIQIDISSDTVCPWCFVGKKNLDKAISASQDQYDFELNWHPFQLNPT 60

Query: 60  APKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQ 119
           APKEGV K ++Y +KFG Q++ + ARM EVFRGLGL+Y+ SGLTGNTL+SH+L+YLAGQQ
Sbjct: 61  APKEGVVKTEYYRSKFGIQSEQMEARMAEVFRGLGLDYDTSGLTGNTLESHKLIYLAGQQ 120

Query: 120 GLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELK 179
           GL KQH+L EEL LGYFTQGKYIGD++FL+ECARK GVEGAAEFL+  ++G+ EV EEL+
Sbjct: 121 GLGKQHDLVEELCLGYFTQGKYIGDRDFLLECARKAGVEGAAEFLETADNGVKEVKEELE 180

Query: 180 KYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVA 215
           KYS  ISGVP +V+NGKH+LSG QPPEV+LRAFQVA
Sbjct: 181 KYSGKISGVPFYVINGKHKLSGAQPPEVFLRAFQVA 216

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242033733|ref|XP_002464261.1| hypothetical protein SORBIDRAFT_01g015110 [Sorghum bicolor] gi|241918115|gb|EER91259.1| hypothetical protein SORBIDRAFT_01g015110 [Sorghum bicolor]

 Score =  329 bits (844), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 151/216 (69%), Positives = 185/216 (85%), Gaps = 1/216 (0%)

Query: 2   AQSVSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAP 61
           A+ ++S  GKKLI+IDVSSDTVCPWCFVGK+NL+KA+  SKD++DFE+RWHPFFLNP AP
Sbjct: 22  AKFMASDTGKKLIQIDVSSDTVCPWCFVGKKNLEKAMEQSKDKFDFEVRWHPFFLNPDAP 81

Query: 62  KEGVNKKDFYENKFGS-QNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQG 120
           KEGV K DF+  KFG  Q +  I+RMTE+FRGLGLEY+MSGLTGNT+DSHRL+ LAG QG
Sbjct: 82  KEGVRKTDFFRAKFGPVQYERAISRMTEIFRGLGLEYDMSGLTGNTMDSHRLITLAGHQG 141

Query: 121 LDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKK 180
            DKQ+ L EELFL YF QGKYIGDK+ L++ ARKVG+EGA E L+DP+ G++EV EELKK
Sbjct: 142 YDKQNALVEELFLNYFCQGKYIGDKQVLLDAARKVGIEGAEELLEDPSKGVDEVQEELKK 201

Query: 181 YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAA 216
           YS+ ISGVPHFV+N K++LSGGQPP V++RAF++AA
Sbjct: 202 YSSGISGVPHFVINNKYQLSGGQPPNVFMRAFEMAA 237

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526550|ref|XP_003531880.1| PREDICTED: uncharacterized protein ywbO-like [Glycine max]

 Score =  329 bits (844), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 152/213 (71%), Positives = 184/213 (86%)

Query: 5   VSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEG 64
           +S  + KKLIRID S+DTVCPWCFVGK+NLDKAIASSKD+Y+FEI WHPF LNP APKEG
Sbjct: 1   MSGISEKKLIRIDASADTVCPWCFVGKKNLDKAIASSKDKYNFEIIWHPFQLNPDAPKEG 60

Query: 65  VNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQ 124
           ++K++FY +KFGSQ++ + ARM+EVF+ +GLEY++SGLTGNT+DSHRL+Y A QQGLDKQ
Sbjct: 61  IDKREFYRSKFGSQSERMEARMSEVFKNVGLEYSLSGLTGNTIDSHRLIYFARQQGLDKQ 120

Query: 125 HNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSAN 184
           H+L EEL +GYFTQGKYIGD +FL+E A KVG+EGA EFL DPN+GL EV EELK  S N
Sbjct: 121 HDLVEELNIGYFTQGKYIGDHKFLLESAAKVGIEGAEEFLKDPNNGLKEVEEELKNNSGN 180

Query: 185 ISGVPHFVLNGKHELSGGQPPEVYLRAFQVAAN 217
           ISGVP++V+NG H+LSGGQ PEV+LRAFQVA  
Sbjct: 181 ISGVPYYVINGTHKLSGGQAPEVFLRAFQVATT 213

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357502469|ref|XP_003621523.1| DSBA-like thioredoxin domain containing protein [Medicago truncatula] gi|355496538|gb|AES77741.1| DSBA-like thioredoxin domain containing protein [Medicago truncatula] gi|388510654|gb|AFK43393.1| unknown [Medicago truncatula]

 Score =  329 bits (843), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 149/217 (68%), Positives = 186/217 (85%)

Query: 1   MAQSVSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSA 60
           M  + S+ + KKL+RID+SSDTVCPWCFVGK+NLDKAIASSKD+Y+FEI WHP+ L+P A
Sbjct: 1   MTDTNSAHSEKKLVRIDISSDTVCPWCFVGKKNLDKAIASSKDKYNFEILWHPYQLSPDA 60

Query: 61  PKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQG 120
           PKEG+ K++FY +KFGS++  + ARM+EVFR +GL Y++SGLTGNT+DSHRL+Y +GQQG
Sbjct: 61  PKEGIEKREFYRSKFGSRSDQMEARMSEVFRTVGLVYSLSGLTGNTMDSHRLIYFSGQQG 120

Query: 121 LDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKK 180
           LDKQH+L EEL LGYFTQ KYIGD+EFL+E A KVG+EGA EFL +PN+GL EV EELK 
Sbjct: 121 LDKQHDLVEELGLGYFTQEKYIGDQEFLLEAAAKVGIEGAEEFLKNPNNGLKEVEEELKT 180

Query: 181 YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAAN 217
           YS NI+GVP++V+NG  +LSGGQPPEV+LRAFQ A +
Sbjct: 181 YSRNITGVPYYVINGSQKLSGGQPPEVFLRAFQAATS 217

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
TAIR|locus:2152307	217	AT5G38900 [Arabidopsis thalian	0.995	0.995	0.680	1.5e-81
UNIPROTKB|Q5LRQ5	218	SPO2070 "DSBA-like thioredoxin	0.880	0.876	0.356	2e-33
TIGR_CMR|SPO_2070	218	SPO_2070 "DSBA-like thioredoxi	0.880	0.876	0.356	2e-33
UNIPROTKB|Q87XK1	215	PSPTO_4177 "2-hydroxychromene-	0.907	0.916	0.367	1.3e-27
TIGR_CMR|SPO_1390	219	SPO_1390 "thioredoxin domain p	0.898	0.890	0.365	4.5e-27
UNIPROTKB|G4N6W8	285	MGG_06508 "Thioredoxin" [Magna	0.511	0.389	0.339	4e-26
ASPGD|ASPL0000031134	202	AN10641 [Emericella nidulans (	0.824	0.886	0.367	7.6e-25
UNIPROTKB|Q9KMY8	217	VC_A0178 "FrnE protein" [Vibri	0.903	0.903	0.331	3e-21
TIGR_CMR|VC_A0178	217	VC_A0178 "conserved hypothetic	0.903	0.903	0.331	3e-21
ASPGD|ASPL0000068796	262	AN10938 [Emericella nidulans (	0.811	0.671	0.319	1.2e-19

TAIR|locus:2152307 AT5G38900 [Arabidopsis thaliana (taxid:3702)]

 Score = 818 (293.0 bits), Expect = 1.5e-81, P = 1.5e-81
 Identities = 147/216 (68%), Positives = 186/216 (86%)

Query:     1 MAQSVSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSA 60
             MA+S S++A KKLI+IDVSSD+VCPWCFVGK+NLDKAI +SKDQY+FEIRW PFFL+PSA
Sbjct:     1 MAESASNTASKKLIQIDVSSDSVCPWCFVGKKNLDKAIEASKDQYNFEIRWRPFFLDPSA 60

Query:    61 PKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQG 120
             PKEGV+KK+FY  K+G++ QG+ ARM+EVF+GLGLE++ +GLTGN+LDSHRL++  G+Q 
Sbjct:    61 PKEGVSKKEFYLQKYGNRYQGMFARMSEVFKGLGLEFDTAGLTGNSLDSHRLIHYTGKQA 120

Query:   121 LDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKK 180
              +KQH L EELF+GYFTQGK+IGD+EFLVE A KVG+EGA EFL DPN+G+ EV EEL K
Sbjct:   121 PEKQHTLVEELFIGYFTQGKFIGDREFLVETANKVGIEGAEEFLSDPNNGVTEVKEELAK 180

Query:   181 YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAA 216
             YS NI+GVP++ +NGK +LSG QPPE +  AF+ A+
Sbjct:   181 YSKNITGVPNYTINGKVKLSGAQPPETFQSAFKAAS 216

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

UNIPROTKB|Q5LRQ5 SPO2070 "DSBA-like thioredoxin family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 72/202 (35%), Positives = 119/202 (58%)

Query:    14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYEN 73
             +++D+ SD +CPWC++GK  LDKA+A+  D + F I WHPF LNP    EG++++++ E 
Sbjct:     5 VKLDILSDPICPWCYIGKTQLDKALAAIPD-HPFVIEWHPFQLNPDMAPEGMDRREYLER 63

Query:    74 KFGSQNQGIIARMTEVFR-----GLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLA 128
             KFG + +G +     V       GL +++     T NTLD+HRL++ AG +G  KQ    
Sbjct:    64 KFGGK-EGAVRAYAPVVEHAEKAGLAIDFEAMQRTPNTLDAHRLIHWAGVEG--KQTEAV 120

Query:   129 EELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEF-LDDPNSGLNEVHE-ELKKYSANIS 186
             + LF  YFT+G+ IGD E L + A  +G++ A    L   ++  +++ + +       +S
Sbjct:   121 DALFAAYFTEGRDIGDAEVLADIADSIGMDAAVVLKLLKSDADRDDIAKRDSHSREMGVS 180

Query:   187 GVPHFVLNGKHELSGGQPPEVY 208
              VP F++  +H + G QPPE++
Sbjct:   181 SVPTFIVANQHAVPGAQPPELW 202

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_2070 SPO_2070 "DSBA-like thioredoxin family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 72/202 (35%), Positives = 119/202 (58%)

Query:    14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYEN 73
             +++D+ SD +CPWC++GK  LDKA+A+  D + F I WHPF LNP    EG++++++ E 
Sbjct:     5 VKLDILSDPICPWCYIGKTQLDKALAAIPD-HPFVIEWHPFQLNPDMAPEGMDRREYLER 63

Query:    74 KFGSQNQGIIARMTEVFR-----GLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLA 128
             KFG + +G +     V       GL +++     T NTLD+HRL++ AG +G  KQ    
Sbjct:    64 KFGGK-EGAVRAYAPVVEHAEKAGLAIDFEAMQRTPNTLDAHRLIHWAGVEG--KQTEAV 120

Query:   129 EELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEF-LDDPNSGLNEVHE-ELKKYSANIS 186
             + LF  YFT+G+ IGD E L + A  +G++ A    L   ++  +++ + +       +S
Sbjct:   121 DALFAAYFTEGRDIGDAEVLADIADSIGMDAAVVLKLLKSDADRDDIAKRDSHSREMGVS 180

Query:   187 GVPHFVLNGKHELSGGQPPEVY 208
              VP F++  +H + G QPPE++
Sbjct:   181 SVPTFIVANQHAVPGAQPPELW 202

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q87XK1 PSPTO_4177 "2-hydroxychromene-2-carboxylate isomerase family protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 76/207 (36%), Positives = 117/207 (56%)

Query:    14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYEN 73
             ++ID  SD  CPWC +G R LD+A+ +  D+   +I + PF LNP+ P EG + K+    
Sbjct:     5 LKIDFISDVSCPWCVIGLRALDQALEALGDEVQAQIHFQPFELNPNMPAEGQDIKEHIAE 64

Query:    74 KFGSQNQGIIARMTEVFRGLGLEYNMSGLTG-----NTLDSHRLLYLAGQQGLDKQHNLA 128
             K+GS  + I A + E  R  G E   +   G     NT D+HRLL+ A Q+G  KQ  L 
Sbjct:    65 KYGSTPEQIEA-IHETIRERGAELGFTFGKGERRIYNTFDAHRLLHWAEQEG--KQPALK 121

Query:   129 EELFLGYFTQGKYIGDKEFLVECARKVGVEGA-AEFLDDPNSGLNEVHEELKKY-SANIS 186
             + LF+ YF++ K     + L + A+KVG++   A+ + D +   +EV E  + + S  I+
Sbjct:   122 QALFVAYFSELKDPSSHQTLADVAQKVGLDRLRAQAILDSDEFASEVREAEQLWTSRGIT 181

Query:   187 GVPHFVLNGKHELSGGQPPEVYLRAFQ 213
              VP  V N ++ +SGGQP EV++ A +
Sbjct:   182 SVPTMVFNDQYAVSGGQPVEVFVSAIR 208

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_1390 SPO_1390 "thioredoxin domain protein, DsbA family" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 76/208 (36%), Positives = 113/208 (54%)

Query:    14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYEN 73
             ++ID+ SD VCPWC VG R LD+A+A++       +RWHPF LNP    EG N ++    
Sbjct:    10 LQIDIVSDVVCPWCIVGFRQLDQALAATGVLA--RLRWHPFELNPQMGPEGQNLREHIME 67

Query:    74 KFGS---QNQGIIARMTEVFRGLGLEYNMSGLTG--NTLDSHRLLYLAGQQGLDKQHNLA 128
             K+GS   Q+    AR+T +   LG  +N +  +   NT  +H+LL  A  QG  +QH L 
Sbjct:    68 KYGSTPEQSAEARARLTAIGAELGFTFNFTDDSRIVNTFAAHQLLDWAEGQG--RQHPLK 125

Query:   129 EELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPNSGLNE--VHEELKKYSAN-I 185
             + LF  YFT G+ + D   L++     G++  A       SG ++  V E+ K ++ + I
Sbjct:   126 QALFAAYFTDGRDVSDLSVLLDAVEAAGLDREAA-QTALTSGAHQAPVREKQKFWAQHGI 184

Query:   186 SGVPHFVLNGKHELSGGQPPEVYLRAFQ 213
             SGVP  V  GK+ L+G Q  + Y +  Q
Sbjct:   185 SGVPSMVFGGKYLLTGAQGADTYAQVIQ 212

GO:0003824 "catalytic activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

UNIPROTKB|G4N6W8 MGG_06508 "Thioredoxin" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 192 (72.6 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
 Identities = 39/115 (33%), Positives = 58/115 (50%)

Query:    15 RIDVSSDTVCPWCFVGKRNLDKAIASSKDQY---DFEIRWHPFFLNPSAPKEGVNKKDFY 71
             ++D+ SDT CPWC+VG ++L+ AIA    Q+    FE+ WHPFF+ P+        ++ Y
Sbjct:    30 KVDIYSDTACPWCYVGNKSLESAIADFTGQHPEASFELVWHPFFVFPNVKGSTYTYREIY 89

Query:    72 ENKFGSQNQGIIARMTEVFRG-LGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQH 125
                 G        R  EV    LG+ ++  G TG+   SH+LL  A +      H
Sbjct:    90 TRAHGPARAADFFRRLEVAGAPLGISFDWHGRTGDMAASHKLLLWASEMSSGSGH 144

GO:0008150 "biological_process" evidence=ND

GO:0043581 "mycelium development" evidence=IEP

ASPGD|ASPL0000031134 AN10641 [Emericella nidulans (taxid:162425)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 76/207 (36%), Positives = 111/207 (53%)

Query:    16 IDVSSDTVCPWCFVGKRNLDKAIASSK--DQYD-FEIRWHPFFLNPSAPK-EGVNKKDFY 71
             I + SD+VCPWC+VG R L +AI + K  +  D F I W PF+LN S+P   GVNK+ FY
Sbjct:     6 IQIISDSVCPWCYVGYRRLSRAITTHKLTNPLDTFTITWSPFYLNASSPGYPGVNKRQFY 65

Query:    72 ENKFGSQNQG-IIARMTEVFRGLGLEYNM--SGLTGNTLDSHRLLYLAGQQGLDKQHNLA 128
             ENKFG+   G I  R+  V  G G+++    +G+ G               GL  Q  + 
Sbjct:    66 ENKFGAARTGAIFERLAAVGEGEGIKFRKIENGVIG---------------GL--QTRVV 108

Query:   129 EELFLGYFTQGKYIGDKEFLVECARKVGVEGA-AE-FLDDPNSGLNEVHEELKKYSAN-I 185
             E LF  YF + K I ++  LVE A   G++ +  E FLD    G+ EV  + +      +
Sbjct:   109 ERLFRAYFEEEKNITERAVLVEAAVGGGLDKSEVEGFLDSDVGGV-EVDRDAEGARRQFV 167

Query:   186 SGVPHFVLNGKHELSGGQPPEVYLRAF 212
             +GVP+F++ G++ + G   PE +L  F
Sbjct:   168 TGVPYFMVQGQYAIEGADEPETFLEVF 194

GO:0008150 "biological_process" evidence=ND

GO:0030288 "outer membrane-bounded periplasmic space" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

UNIPROTKB|Q9KMY8 VC_A0178 "FrnE protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 69/208 (33%), Positives = 106/208 (50%)

Query:    14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYEN 73
             + ID+ SD VCPWC +G   L  A+A   +  +  +RWHP+ LNP     G N ++    
Sbjct:     4 LTIDLVSDIVCPWCVIGYFRLRHALARLPE-VNVTLRWHPYELNPRLAIGGENLREHLNK 62

Query:    74 KFGSQ---NQGIIARMTEVFRGLGLEYNMSGLTG--NTLDSHRLLYLAGQQGLDKQHNLA 128
             K+G+    +Q     +TE+   +G  ++        NT  +H+LL  A QQ  DKQ  L 
Sbjct:    63 KYGTSLEASQQARKTLTELGNDVGFAFHFFDEMRIYNTRKAHQLLLWAHQQ--DKQLPLT 120

Query:   129 EELFLGYFTQGKYIGDKEFLVECARKVGVEGAA--EFLDDPNSGLNEV-HEELKKYSANI 185
               L+  YF QG+ I + E L+E A+ VG++ +A  + L D  S  N V + E +   A I
Sbjct:   121 LALWSAYFQQGQAIDEDEVLLEIAQTVGLDRSACQQILTD-ESWANAVANTEQQWLQAGI 179

Query:   186 SGVPHFVLNGKHELSGGQPPEVYLRAFQ 213
               VP  ++  K+ +SG Q  ++ L   Q
Sbjct:   180 HAVPTLIIEQKYLISGAQTSDILLDVLQ 207

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|VC_A0178 VC_A0178 "conserved hypothetical protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 69/208 (33%), Positives = 106/208 (50%)

Query:    14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYEN 73
             + ID+ SD VCPWC +G   L  A+A   +  +  +RWHP+ LNP     G N ++    
Sbjct:     4 LTIDLVSDIVCPWCVIGYFRLRHALARLPE-VNVTLRWHPYELNPRLAIGGENLREHLNK 62

Query:    74 KFGSQ---NQGIIARMTEVFRGLGLEYNMSGLTG--NTLDSHRLLYLAGQQGLDKQHNLA 128
             K+G+    +Q     +TE+   +G  ++        NT  +H+LL  A QQ  DKQ  L 
Sbjct:    63 KYGTSLEASQQARKTLTELGNDVGFAFHFFDEMRIYNTRKAHQLLLWAHQQ--DKQLPLT 120

Query:   129 EELFLGYFTQGKYIGDKEFLVECARKVGVEGAA--EFLDDPNSGLNEV-HEELKKYSANI 185
               L+  YF QG+ I + E L+E A+ VG++ +A  + L D  S  N V + E +   A I
Sbjct:   121 LALWSAYFQQGQAIDEDEVLLEIAQTVGLDRSACQQILTD-ESWANAVANTEQQWLQAGI 179

Query:   186 SGVPHFVLNGKHELSGGQPPEVYLRAFQ 213
               VP  ++  K+ +SG Q  ++ L   Q
Sbjct:   180 HAVPTLIIEQKYLISGAQTSDILLDVLQ 207

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000068796 AN10938 [Emericella nidulans (taxid:162425)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 60/188 (31%), Positives = 93/188 (49%)

Query:    13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQY------DFEIRWHPFFLNPSAPKEGVN 66
             +I I++ SD +CPWCF+G R L KAIA  K  Y      +F I W P+F++  AP+  V 
Sbjct:     3 VISIEIISDVICPWCFIGYRTLQKAIALYKKTYPGGSENEFVIEWKPYFIDQVAPETSVL 62

Query:    67 KKDFYENKFG-SQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLA-GQQGLDKQ 124
               D    +   SQ +    R+  +   +G+ +   G  G++  +HR L+LA  + G   Q
Sbjct:    63 INDRMARRMTRSQIEAAQKRLKRIGSTVGISFKFGGYIGSSRLAHRALHLALDKGGSQMQ 122

Query:   125 HNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEG--AAEFLDDPNSGLNEVHE-ELKKY 181
               +A+ LF   F   K +     +VE A K G++G    E+L+  + G  E+   E K  
Sbjct:   123 CTVADTLFQYQFELEKDVSQMHTVVEAAEKAGMDGDLVREYLEG-DGGKEEIETAERKAR 181

Query:   182 SANISGVP 189
                + GVP
Sbjct:   182 KRGVKGVP 189

GO:0008150 "biological_process" evidence=ND

GO:0030288 "outer membrane-bounded periplasmic space" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.5.1.18	LOW CONFIDENCE prediction!
3rd Layer	2.5.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00038081001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (217 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00017913001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (430 aa)	•						•		0.626
	GSVIVG00016858001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (405 aa)	•								0.415

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	217
cd03024	201	cd03024, DsbA_FrnE, DsbA family, FrnE subfamily; F	3e-81
COG2761	225	COG2761, FrnE, Predicted dithiol-disulfide isomera	3e-53
pfam01323	191	pfam01323, DSBA, DSBA-like thioredoxin domain	2e-39
cd03022	192	cd03022, DsbA_HCCA_Iso, DsbA family, 2-hydroxychro	3e-11
cd02972	98	cd02972, DsbA_family, DsbA family; consists of Dsb	2e-08
cd03019	178	cd03019, DsbA_DsbA, DsbA family, DsbA subfamily; D	0.003

>gnl|CDD|239322 cd03024, DsbA_FrnE, DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif

 Score =  240 bits (615), Expect = 3e-81
 Identities = 88/204 (43%), Positives = 125/204 (61%), Gaps = 9/204 (4%)

Query: 16  IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKF 75
           ID+ SD VCPWC++GKR L+KA+A   D+ D EI W PF LNP  P EG +++++   K+
Sbjct: 1   IDIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPFELNPDMPPEGEDRREYLARKY 60

Query: 76  GSQNQGIIA--RMTEVFRGLGLEYNMSGLT-GNTLDSHRLLYLAGQQGLDKQHNLAEELF 132
           GS  +   A  R+       GLE++   +   NT D+HRL++LA +QG  KQ  L E LF
Sbjct: 61  GSTAEQAAAMRRVEAAAAAEGLEFDFDRVRPPNTFDAHRLIHLAKEQG--KQDALVEALF 118

Query: 133 LGYFTQGKYIGDKEFLVECARKVGVEGAA--EFLDDPNSGLNEVHEELKKYSAN-ISGVP 189
             YFT+GK IGD++ LV+ A + G++ A     L   +   +EV  +  +     ISGVP
Sbjct: 119 RAYFTEGKDIGDRDVLVDLAEEAGLDAAEARAVLAS-DEYADEVRADEARARQLGISGVP 177

Query: 190 HFVLNGKHELSGGQPPEVYLRAFQ 213
            FV NGK+ +SG QPPEV+L+A +
Sbjct: 178 FFVFNGKYAVSGAQPPEVFLQALR 201

It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins. Length = 201

>gnl|CDD|225355 COG2761, FrnE, Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  170 bits (432), Expect = 3e-53
 Identities = 79/212 (37%), Positives = 117/212 (55%), Gaps = 10/212 (4%)

Query: 14  IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYEN 73
           I IDV SD VCPWC++GKR L+KA+A    +   EIRW PF L+P  P EG+++K++   
Sbjct: 6   IEIDVFSDVVCPWCYIGKRRLEKALAEYPQEVRVEIRWRPFELDPDLPPEGLDRKEYLAQ 65

Query: 74  KFGSQ--NQGIIARMTEVFRGLGLEYNMSGL--TGNTLDSHRLLYLAGQQGLDKQHNLAE 129
           K+G     +   AR+ E+    G+++N   +    NTLD+HRL+  A  QG   Q    E
Sbjct: 66  KYGISEEQKAAHARLEELAEEEGIDFNFDAIVPAPNTLDAHRLIKAAELQG-KAQDRFLE 124

Query: 130 ELFLGYFTQGKYIGDKEFLVECARKVGVEG--AAEFLDDPNSGLNEVHEELKKYS-ANIS 186
            LF  YF +G+ IGD++ L + A +VG++       L    +  + V ++        I 
Sbjct: 125 ALFEAYFEEGRNIGDEDVLADIAEEVGLDREEFKADLASD-AAKDAVRQDEAAAQEMGIR 183

Query: 187 GVPHFVLNGKHELSGGQPPEVYLRA-FQVAAN 217
           GVP FV +GK+ +SG QP +V   A  Q+ A 
Sbjct: 184 GVPTFVFDGKYAVSGAQPYDVLEDALRQLLAE 215

Length = 225

>gnl|CDD|216433 pfam01323, DSBA, DSBA-like thioredoxin domain

 Score =  134 bits (338), Expect = 2e-39
 Identities = 48/202 (23%), Positives = 78/202 (38%), Gaps = 14/202 (6%)

Query: 15  RIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENK 74
            +D   D +CP+C++ K  L+K  A   D    ++ + PF L  +     V   +     
Sbjct: 1   TVDEFFDFLCPFCYLAKERLEKLAARYGD---VKVVYRPFPLAGAKKIGNVGPSNLPV-- 55

Query: 75  FGSQNQGIIARMTEVFRGLGLEYNMSGL-TGNTLDSHRLLYLAGQQGLDKQHNLAEELFL 133
              + + ++A +       G+         GN+  ++RL   AG +       +  ELF 
Sbjct: 56  ---KLKYMMADLERWAALYGIPLRFPANFLGNSTRANRLALAAGAE--GLAEKVVRELFN 110

Query: 134 GYFTQGKYIGDKEFLVECARKVGVEGAA--EFLDDPNSGLNEVHEELKKYSANISGVPHF 191
             + +G  I D   L E A K G++     EFLD P              S  + GVP F
Sbjct: 111 ALWGEGAAITDDSVLREVAEKAGLDAEEFDEFLDSPAVKEAVRENTAAAISLGVFGVPTF 170

Query: 192 VLNGKHELSGGQPPEVYLRAFQ 213
           V+ GK  + G    +    A  
Sbjct: 171 VVGGK-MVFGADRLDTLADALA 191

This family contains a diverse set of proteins with a thioredoxin-like structure pfam00085. This family also includes 2-hydroxychromene-2-carboxylate (HCCA) isomerase enzymes catalyze one step in prokaryotic polyaromatic hydrocarbon (PAH) catabolic pathways. This family also contains members with functions other than HCCA isomerisation, such as Kappa family GSTs, whose similarity to HCCA isomerases was not previously recognised. Some member sequences have been annotated as a dioxygenases, dehydrogenases, and putative glycerol-3-phosphate transfer proteins, but are most likely HCCA isomerase enzymes. Length = 191

>gnl|CDD|239320 cd03022, DsbA_HCCA_Iso, DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway

 Score = 59.6 bits (145), Expect = 3e-11
 Identities = 38/193 (19%), Positives = 62/193 (32%), Gaps = 41/193 (21%)

Query: 21  DTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNP-------SAPKEGVNKKDFYEN 73
           D   P+ ++    L    A    ++   +R+ P  L           P      K  Y  
Sbjct: 6   DFSSPYSYLAHERLPALAA----RHGATVRYRPILLGGVFKATGNVPPANRPPAKGRY-- 59

Query: 74  KFGSQNQGIIARMTEVFRG---LGLEYNM-SGLTGNTLDSHRLLYLAGQQGLDKQHNLAE 129
                      R+ ++ R     G+          NTL + R    A  +G   +   A 
Sbjct: 60  -----------RLRDLERWARRYGIPLRFPPRFPPNTLRAMRAALAAQAEGDAAEA-FAR 107

Query: 130 ELFLGYFTQGKYIGDKEFLVECARKVGVEGAA--EFLDDPNSGLNEVHEELKK-----YS 182
            +F   + +G  I D   L   A   G++        DDP      V   L+       +
Sbjct: 108 AVFRALWGEGLDIADPAVLAAVAAAAGLDADELLAAADDP-----AVKAALRANTEEAIA 162

Query: 183 ANISGVPHFVLNG 195
             + GVP FV++G
Sbjct: 163 RGVFGVPTFVVDG 175

It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK). Length = 192

>gnl|CDD|239270 cd02972, DsbA_family, DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

 Score = 50.1 bits (120), Expect = 2e-08
 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVN 66
          I    D +CP+C++ +  L+K +    D     + + PF L    P   + 
Sbjct: 1  IVEFFDPLCPYCYLFEPELEKLLY--ADDGGVRVVYRPFPLLGGMPPNSLA 49

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. Length = 98

>gnl|CDD|239317 cd03019, DsbA_DsbA, DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 10/97 (10%)

Query: 111 RLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPNSG 170
           R  Y A  + L  +  L   LF     + K + D + + +     GV+   +F    NS 
Sbjct: 67  RAFYAA--EALGLEDKLHAALFEAIHEKRKRLLDPDDIRKIFLSQGVD-KKKFDAAYNS- 122

Query: 171 LNEVHEELKKY-----SANISGVPHFVLNGKHELSGG 202
              V   + K         I+GVP FV+NGK+ ++  
Sbjct: 123 -FSVKALVAKAEKLAKKYKITGVPAFVVNGKYVVNPS 158

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain. Length = 178

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	217
COG2761	225	FrnE Predicted dithiol-disulfide isomerase involve	100.0
cd03024	201	DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a D	100.0
PF01323	193	DSBA: DSBA-like thioredoxin domain; InterPro: IPR0	100.0
cd03022	192	DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-car	100.0
cd03021	209	DsbA_GSTK DsbA family, Glutathione (GSH) S-transfe	100.0
COG3917	203	NahD 2-hydroxychromene-2-carboxylate isomerase [Se	100.0
cd03025	193	DsbA_FrnE_like DsbA family, FrnE-like subfamily; c	99.97
COG3531	212	Predicted protein-disulfide isomerase [Posttransla	99.95
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	99.94
PF13743	176	Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.	99.94
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	99.94
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	99.9
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	99.87
COG1651	244	DsbG Protein-disulfide isomerase [Posttranslationa	99.67
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	99.62
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	99.62
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	99.55
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	99.42
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	98.33
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	98.16
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	97.51
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	97.19
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	97.18
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	97.11
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	96.8
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	96.7
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	96.47
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	96.45
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	96.45
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	96.43
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	96.4
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	96.06
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	96.02
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	96.01
COG2143	182	Thioredoxin-related protein [Posttranslational mod	95.81
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	95.67
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	95.56
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	95.48
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	95.4
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	95.36
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	95.09
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	95.02
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	94.92
KOG3160	220	consensus Gamma-interferon inducible lysosomal thi	94.87
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	94.85
PTZ00056	199	glutathione peroxidase; Provisional	94.77
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	94.72
PRK10996	139	thioredoxin 2; Provisional	94.71
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	94.71
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	94.71
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	94.39
PLN02412	167	probable glutathione peroxidase	94.37
PF07511	114	DUF1525: Protein of unknown function (DUF1525); In	94.37
PTZ00062	204	glutaredoxin; Provisional	94.33
PRK11200	85	grxA glutaredoxin 1; Provisional	94.09
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	94.07
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	94.03
PRK11200	85	grxA glutaredoxin 1; Provisional	93.87
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	93.82
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	93.82
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	93.72
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	93.67
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	93.61
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	93.52
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	93.51
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	93.51
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	93.48
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	93.43
PHA03050	108	glutaredoxin; Provisional	93.42
PRK10329	81	glutaredoxin-like protein; Provisional	93.34
TIGR03757	113	conj_TIGR03757 integrating conjugative element pro	93.3
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	93.09
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	93.09
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	93.01
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	92.98
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	92.82
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	92.73
PHA02278	103	thioredoxin-like protein	92.73
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	92.67
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	92.57
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	92.5
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	92.49
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	92.29
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	92.21
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	92.19
PF06953	123	ArsD: Arsenical resistance operon trans-acting rep	92.12
PRK09381	109	trxA thioredoxin; Provisional	92.05
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	92.02
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	91.9
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	91.89
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	91.61
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	91.58
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	91.41
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	91.39
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	91.05
COG3011	137	Predicted thiol-disulfide oxidoreductase [General	91.05
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	90.89
PF13728	215	TraF: F plasmid transfer operon protein	90.88
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	90.86
PF13728	215	TraF: F plasmid transfer operon protein	90.82
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	90.75
PRK10638	83	glutaredoxin 3; Provisional	90.73
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	90.18
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	90.11
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	90.07
PF03227	108	GILT: Gamma interferon inducible lysosomal thiol r	90.06
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	90.05
PRK10329	81	glutaredoxin-like protein; Provisional	89.99
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	89.83
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	89.8
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	89.72
cd02947	93	TRX_family TRX family; composed of two groups: Gro	89.69
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	89.67
PHA02125	75	thioredoxin-like protein	89.64
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	89.51
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	89.33
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	89.24
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	89.01
PRK10824	115	glutaredoxin-4; Provisional	88.97
cd03036	111	ArsC_like Arsenate Reductase (ArsC) family, unknow	88.81
KOG1752	104	consensus Glutaredoxin and related proteins [Postt	88.74
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	88.71
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	88.66
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	88.64
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	88.51
PRK09381	109	trxA thioredoxin; Provisional	88.46
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	88.43
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	88.14
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	88.09
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	88.08
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	88.0
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	87.73
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	87.7
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	87.69
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	87.6
COG5494	265	Predicted thioredoxin/glutaredoxin [Posttranslatio	87.38
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	87.26
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	87.07
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	86.95
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	86.73
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	86.69
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	86.6
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	86.5
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	86.44
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	86.34
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	86.32
PRK10638	83	glutaredoxin 3; Provisional	86.27
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	86.21
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	86.1
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	86.09
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	86.0
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	85.96
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	85.66
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	85.63
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	85.62
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	85.51
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	85.46
PTZ00062	204	glutaredoxin; Provisional	85.27
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	85.14
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	85.03
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	84.95
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	84.92
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	84.67
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	84.66
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	84.56
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	84.36
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	84.09
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	83.94
PHA03050	108	glutaredoxin; Provisional	83.68
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	83.66
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	83.61
cd02947	93	TRX_family TRX family; composed of two groups: Gro	83.5
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	83.25
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	83.09
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	83.04
PTZ00051	98	thioredoxin; Provisional	82.96
cd03040	77	GST_N_mPGES2 GST_N family; microsomal Prostaglandi	82.84
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	82.65
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	82.6
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	82.55
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	82.49
smart00594	122	UAS UAS domain.	82.48
PTZ00051	98	thioredoxin; Provisional	82.38
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	82.19
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	82.1
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	81.6
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	80.93
PTZ00256	183	glutathione peroxidase; Provisional	80.71
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	80.65
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	80.14

>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=7.8e-47  Score=294.46  Aligned_cols=206  Identities=37%  Similarity=0.677  Sum_probs=193.7

Q ss_pred             CCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCC--cHHHHHHHHH
Q 027910           10 GKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGS--QNQGIIARMT   87 (217)
Q Consensus        10 ~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~   87 (217)
                      .+.+++|++|+|+.|||||+++++|++++.+|+....++++|+||.|.+..+..|.+..+++..+||.  +.+.+...+.
T Consensus         2 ~~~~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~~v~i~w~pf~l~p~~~~~g~~~~~~l~~k~g~~~~~~~~~~~~~   81 (225)
T COG2761           2 NPMKIEIDVFSDVVCPWCYIGKRRLEKALAEYPQEVRVEIRWRPFELDPDLPPEGLDRKEYLAQKYGISEEQKAAHARLE   81 (225)
T ss_pred             CCceEEEEEEeCCcCchhhcCHHHHHHHHHhcCcceeEEEEecccccCCCCCcccccHHHHHHHHhCccHHHHHHHHHHH
Confidence            46799999999999999999999999999999988899999999999999888888889999999987  3466777889


Q ss_pred             HHHHhcCCccccCCC--CCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc--c
Q 027910           88 EVFRGLGLEYNMSGL--TGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE--F  163 (217)
Q Consensus        88 ~~a~~~g~~~~~~~~--~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~--~  163 (217)
                      +.+...|+.+++...  .+||..||+++.+|+.+|+ .+.+|.++||+++|.+|+||+|.++|.+||+++|||.+++  .
T Consensus        82 ~~~~~~Gi~~~f~~~~~~~nt~~Ah~l~~~A~~~G~-~~~~~~~~lf~AyF~eg~nI~D~dVL~diA~~~GLD~~~~~~~  160 (225)
T COG2761          82 ELAEEEGIDFNFDAIVPAPNTLDAHRLIKAAELQGK-AQDRFLEALFEAYFEEGRNIGDEDVLADIAEEVGLDREEFKAD  160 (225)
T ss_pred             HhhHhcCcccchhhccCCCchHHHHHHHHHHHHhCc-hHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHhCCCHHHHHHH
Confidence            999999999999874  5899999999999999997 7999999999999999999999999999999999999999  8


Q ss_pred             ccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHHHHh
Q 027910          164 LDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       164 l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~~~~  216 (217)
                      +.|+..++.++++.+.++++||+|||||||+|+|.++|+++++.|+.+|++++
T Consensus       161 L~s~~~~~avr~d~~~A~e~gI~gVP~fv~d~~~~V~Gaq~~~v~~~al~~~~  213 (225)
T COG2761         161 LASDAAKDAVRQDEAAAQEMGIRGVPTFVFDGKYAVSGAQPYDVLEDALRQLL  213 (225)
T ss_pred             HhChHHHHHHHHHHHHHHHCCCccCceEEEcCcEeecCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999875

>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif

Probab=100.00  E-value=2.1e-40  Score=260.88  Aligned_cols=196  Identities=43%  Similarity=0.804  Sum_probs=176.5

Q ss_pred             EEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCC--cHHHHHHHHHHHHHhc
Q 027910           16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGS--QNQGIIARMTEVFRGL   93 (217)
Q Consensus        16 i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~   93 (217)
                      |++|+|+.|||||++.++|++++++|+.+.+++|+|+||.|++..+..|......+..+++.  +..+++.++.++++.+
T Consensus         1 I~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~a~~~   80 (201)
T cd03024           1 IDIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPFELNPDMPPEGEDRREYLARKYGSTAEQAAAMRRVEAAAAAE   80 (201)
T ss_pred             CeEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHc
Confidence            67999999999999999999999988643479999999999998877776656666666665  5567778999999999


Q ss_pred             CCccccCCC-CCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc--cccCcccc
Q 027910           94 GLEYNMSGL-TGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE--FLDDPNSG  170 (217)
Q Consensus        94 g~~~~~~~~-~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~--~l~~~~~~  170 (217)
                      |++|+++.. +++|..+++++.+|+.+|.  ..+|+++||+++|.+|+++++.++|.++++++|||.+++  .+++++++
T Consensus        81 gi~~~~~~~~~~~s~~a~~~~~~a~~~~~--~~~~~~~lf~a~~~~~~~i~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~  158 (201)
T cd03024          81 GLEFDFDRVRPPNTFDAHRLIHLAKEQGK--QDALVEALFRAYFTEGKDIGDRDVLVDLAEEAGLDAAEARAVLASDEYA  158 (201)
T ss_pred             CCcccCCCCccCCcHHHHHHHHHHhccCc--HHHHHHHHHHHHHccCCCCCCHHHHHHHHHHcCCCHHHHHHHhcCcccc
Confidence            999998765 4599999999999988876  999999999999999999999999999999999999988  89999999


Q ss_pred             hhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHH
Q 027910          171 LNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQ  213 (217)
Q Consensus       171 ~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~  213 (217)
                      +.+.++.+.+.+.||+|||||+|||++.+.|+++++.|.++|+
T Consensus       159 ~~~~~~~~~a~~~gv~G~Pt~vv~g~~~~~G~~~~~~~~~~i~  201 (201)
T cd03024         159 DEVRADEARARQLGISGVPFFVFNGKYAVSGAQPPEVFLQALR  201 (201)
T ss_pred             hHHHHHHHHHHHCCCCcCCEEEECCeEeecCCCCHHHHHHHhC
Confidence            9999999999999999999999999999999999999999874

It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.

>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []

Probab=100.00  E-value=5.8e-38  Score=245.21  Aligned_cols=189  Identities=29%  Similarity=0.522  Sum_probs=161.2

Q ss_pred             EEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCC-CCChHHHHHhhhCCcHHHHHHHHHHHHHhc
Q 027910           15 RIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKE-GVNKKDFYENKFGSQNQGIIARMTEVFRGL   93 (217)
Q Consensus        15 ~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   93 (217)
                      ||++|+|+.|||||+++++|.++.++++   +++|+|+|+.|.+..... |....+     ...+..+++.++.++++.+
T Consensus         1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~---~~~i~~~p~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~a~~~   72 (193)
T PF01323_consen    1 TIEFFFDFICPWCYLASPRLRKLRAEYP---DVEIEWRPFPLRPDMRRSGGAPPAE-----DPAKAEYMFQDLERWARRY   72 (193)
T ss_dssp             EEEEEEBTTBHHHHHHHHHHHHHHHHHT---TCEEEEEEESSSTHHHHCT-SCGCG-----SHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHHHHHhc---CCcEEEeccccccccccCCCCCccc-----ChhHHHHHHHHHHHHHHHh
Confidence            7999999999999999999999999773   599999999998764322 222211     1125788999999999999


Q ss_pred             CCccccCCC-CCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc--cccCcccc
Q 027910           94 GLEYNMSGL-TGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE--FLDDPNSG  170 (217)
Q Consensus        94 g~~~~~~~~-~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~--~l~~~~~~  170 (217)
                      |++++++.. +.+|..+++++.+++.+|.  ..++++++|+++|.+|+||++.++|.++++++|+|.+++  .+++++++
T Consensus        73 gi~~~~~~~~~~~s~~a~~~~~~a~~~~~--~~~~~~al~~a~~~~~~~i~~~~vl~~~~~~~Gld~~~~~~~~~~~~~~  150 (193)
T PF01323_consen   73 GIPFNFPPPFPGNSRPAHRAAYAAQEQGK--ADAFADALFRAYFVEGRDISDPDVLAEIAEEAGLDPDEFDAALDSPEVK  150 (193)
T ss_dssp             T--TBTSSTHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHTSST-TSSHHHHHHHHHHTT--HHHHHHHHTSHHHH
T ss_pred             cCcccCCchhhhhhHHHHHHHHHHHHhhh--hhHHHHHHHHHHHhcccCCCCHHHHHHHHHHcCCcHHHHHHHhcchHHH
Confidence            999998764 2488999999999999885  999999999999999999999999999999999999998  78999999


Q ss_pred             hhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHH
Q 027910          171 LNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQ  213 (217)
Q Consensus       171 ~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~  213 (217)
                      +.+.++.+.+.++||+|||||+|||++.+.|.++.+.|+++|+
T Consensus       151 ~~~~~~~~~a~~~gv~GvP~~vv~g~~~~~G~~~~~~l~~~l~  193 (193)
T PF01323_consen  151 AALEEDTAEARQLGVFGVPTFVVNGKYRFFGADRLDELEDALQ  193 (193)
T ss_dssp             HHHHHHHHHHHHTTCSSSSEEEETTTEEEESCSSHHHHHHHH-
T ss_pred             HHHHHHHHHHHHcCCcccCEEEECCEEEEECCCCHHHHHHHhC
Confidence            9999999999999999999999999988999999999999884

The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....

>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway

Probab=100.00  E-value=9.1e-37  Score=238.37  Aligned_cols=188  Identities=21%  Similarity=0.307  Sum_probs=161.0

Q ss_pred             EEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHHHHHHHhcCC
Q 027910           16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGL   95 (217)
Q Consensus        16 i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~   95 (217)
                      |++|+|+.|||||++.++|+++..+|    +++|+|+||.|++..+..|.....   .+...+..+++.++.++++.+|+
T Consensus         1 i~~~~D~~cP~cy~~~~~l~~~~~~~----~~~i~~~p~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~g~   73 (192)
T cd03022           1 IDFYFDFSSPYSYLAHERLPALAARH----GATVRYRPILLGGVFKATGNVPPA---NRPPAKGRYRLRDLERWARRYGI   73 (192)
T ss_pred             CeEEEeCCChHHHHHHHHHHHHHHHh----CCeeEEeeeeHHHHHHHhCCCCCc---ccccHHHHHHHHHHHHHHHHcCC
Confidence            67999999999999999999988755    589999999987753222211100   00012567888999999999999


Q ss_pred             ccccCCC-CCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc--cccCcccchh
Q 027910           96 EYNMSGL-TGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE--FLDDPNSGLN  172 (217)
Q Consensus        96 ~~~~~~~-~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~--~l~~~~~~~~  172 (217)
                      +|+++.. +.+|..+++++.+|+.+| ++..+++++||+++|.+|+++++.++|.+++.++|+|.+++  .++++++++.
T Consensus        74 ~~~~~~~~~~~s~~a~~~~~~a~~~~-~~~~~~~~~lf~a~~~~~~~i~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~  152 (192)
T cd03022          74 PLRFPPRFPPNTLRAMRAALAAQAEG-DAAEAFARAVFRALWGEGLDIADPAVLAAVAAAAGLDADELLAAADDPAVKAA  152 (192)
T ss_pred             CCCCCCCCCCChHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHcCCCHHHHHHHcCCHHHHHH
Confidence            9998754 569999999999999888 34999999999999999999999999999999999999988  8899999999


Q ss_pred             HHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHH
Q 027910          173 EVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAF  212 (217)
Q Consensus       173 ~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i  212 (217)
                      +.++.+.+.+.||+|||||+|||+ .+.|.++.+.++..|
T Consensus       153 l~~~~~~a~~~gi~gvPtfvv~g~-~~~G~~~l~~~~~~l  191 (192)
T cd03022         153 LRANTEEAIARGVFGVPTFVVDGE-MFWGQDRLDMLEEAL  191 (192)
T ss_pred             HHHHHHHHHHcCCCcCCeEEECCe-eecccccHHHHHHHh
Confidence            999999999999999999999998 679999999988776

It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).

>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates

Probab=100.00  E-value=1.6e-35  Score=234.69  Aligned_cols=190  Identities=16%  Similarity=0.217  Sum_probs=157.7

Q ss_pred             EEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHHHHHHHhcC
Q 027910           15 RIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLG   94 (217)
Q Consensus        15 ~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g   94 (217)
                      +|++|||+.|||||++.++|+++++.    .+++|+||||.|++..+..|...+..    ...|.++++.++.++++.+|
T Consensus         2 ~Id~~~D~vcPwcylg~~~l~~~~~~----~~v~i~~~P~~L~~~~~~~g~~~~~~----~~~k~~~~~~~~~~~a~~~G   73 (209)
T cd03021           2 KIELYYDVVSPYSYLAFEVLCRYQTA----WNVDITYVPVFLGGIMKDSGNKPPIM----LPNKAKYMAKDRKRSAEFFG   73 (209)
T ss_pred             ceEEEEeCCChHHHHHHHHHHHHHHH----hCCeEEEEeeehhHHHhccCCCCccc----CchHHHHHHHHHHHHHHHhC
Confidence            68999999999999999999998863    56999999999988765555432211    12378999999999999999


Q ss_pred             CccccCCC----CCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHH----HHHHHHcCCCcccc--cc
Q 027910           95 LEYNMSGL----TGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFL----VECARKVGVEGAAE--FL  164 (217)
Q Consensus        95 ~~~~~~~~----~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L----~~ia~~~Gld~~~~--~l  164 (217)
                      ++|+++..    ++||..+||++.+|+.+|.+...++.+++|+++|.+|.++++..++    .+++.++|||.+..  .+
T Consensus        74 l~~~~~~~~~~~~~nt~~a~rl~~~a~~~~~~~~~~~~~~l~~a~f~~g~~i~~~~~l~~vL~~~a~~~Gld~~~~~~~l  153 (209)
T cd03021          74 VPIRQPKDFFFMKKGTLTAQRFLTAISEQHPESTLTALEALFREFWVRPWSLTEPITESQSISVAADKLGGSAEQAEKLL  153 (209)
T ss_pred             CCCCCCCCCcccCcccHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHcCCCcccHHHHH
Confidence            99998763    4899999999999988776323679999999999999988855544    79999999997665  33


Q ss_pred             ---cCcccchhHHHHHHHHHhCCCCeecEEEEC---Ce-eeecCCCCHHHHHHHH
Q 027910          165 ---DDPNSGLNEVHEELKKYSANISGVPHFVLN---GK-HELSGGQPPEVYLRAF  212 (217)
Q Consensus       165 ---~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~---g~-~~~~G~~~~~~l~~~i  212 (217)
                         .++++++.+.++++.|.+.||+|||||+|+   |+ ..++|.+..+.++..|
T Consensus       154 ~~~~~~~~~~~l~~~~~~A~~~Gv~GVP~fvv~~~~~~~e~fwG~Drl~~~~~~l  208 (209)
T cd03021         154 KAASTPEVKNRLKENTDEALKYGAFGLPWIVVTNDKGKTEMFFGSDRFEQVADFL  208 (209)
T ss_pred             HHccCHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCCccceecCCcHHHHHHHh
Confidence               578889999999999999999999999995   31 4789999988887765

It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.

>COG3917 NahD 2-hydroxychromene-2-carboxylate isomerase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=6e-33  Score=205.86  Aligned_cols=196  Identities=18%  Similarity=0.253  Sum_probs=168.9

Q ss_pred             ccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHHH
Q 027910            8 SAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMT   87 (217)
Q Consensus         8 ~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   87 (217)
                      ++.+.+-+|++||||.|||+|++.++++.+.++    ++..+.|||+.++.+....|...+- .  ..+.+-.|.+.++.
T Consensus         2 ~~~~~~ktIef~fdf~SP~ayL~~~~~~~laq~----~ga~v~~rP~llg~vfk~tG~~~Pl-~--~~~~~~dY~~~d~~   74 (203)
T COG3917           2 PPEGMNKTIEFYFDFSSPYAYLAWPRLPALAQA----YGAAVALRPILLGGVFKATGNGVPL-I--KTPQPGDYITLDLK   74 (203)
T ss_pred             CCCCCCceeEEEEecCCchHHhhhhhhHHHHHH----cCCceEEEeeeeceeEeecCCCCcc-c--ccCCCCceehHHHH
Confidence            456778899999999999999999999999885    4689999999999888776633211 1  11223568999999


Q ss_pred             HHHHhcCCccccCC-CCCCcHHHHHHHHHHhh-cCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc--c
Q 027910           88 EVFRGLGLEYNMSG-LTGNTLDSHRLLYLAGQ-QGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE--F  163 (217)
Q Consensus        88 ~~a~~~g~~~~~~~-~~~~s~~a~~~~~~a~~-~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~--~  163 (217)
                      |.++++|+++.++. +++|+..+.|++.++.. -+.  +.+|.++++++.|+++.++.+++++..++.++|||.+++  .
T Consensus        75 R~akr~Glp~~f~~~fp~nt~~~~R~~~~~~~~g~~--a~~~~~a~lrAlw~d~~~l~epev~~~vA~~aGlDg~al~A~  152 (203)
T COG3917          75 REAKRHGLPLRFPRHFPPNTLGAARAMIALAMGGGL--AEQFAEAVLRALWADGQNLGEPEVVYAVANAAGLDGAALLAL  152 (203)
T ss_pred             HHHHHcCCccccCCCCCCchHHHHHHHHHHHhccch--HHHHHHHHHHHHhhcccccCChHHHHHHHHHcCCCHHHHHhh
Confidence            99999999998876 46899999999998533 344  999999999999999999999999999999999999998  7


Q ss_pred             ccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHH
Q 027910          164 LDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQ  213 (217)
Q Consensus       164 l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~  213 (217)
                      ++|+++++++..++.++.+.|++|+||||++++ .+.|.+....++..+.
T Consensus       153 ~gd~eik~~l~a~~~~a~srGvfGaPtfivg~q-~fwGqDRL~~lea~L~  201 (203)
T COG3917         153 LGDDEIKARLKANTAEAVSRGVFGAPTFIVGDQ-LFWGQDRLYQLEAELR  201 (203)
T ss_pred             cCCHHHHHHHHhhHHHHHhcCccCCCeEEECCe-eeechhHHHHHHHHHh
Confidence            889999999999999999999999999999988 7899988888887764

>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE

Probab=99.97  E-value=2.9e-30  Score=201.81  Aligned_cols=169  Identities=17%  Similarity=0.220  Sum_probs=140.8

Q ss_pred             eEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHHHHHHH-h
Q 027910           14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFR-G   92 (217)
Q Consensus        14 v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~-~   92 (217)
                      ++|++|+||.|||||++.++|+++.++|+  .+++|+|+++.|.+.....+..           +..+...+..+.+. .
T Consensus         1 ~~i~~~~D~~cp~c~~~~~~l~~l~~~~~--~~~~v~~~~~~L~~~~~~~~~~-----------~~~~~~~~~~~~~~~~   67 (193)
T cd03025           1 LELYYFIDPLCGWCYGFEPLLEKLKEEYG--GGIEVELHLGGLLPGNNARQIT-----------KQWRIYVHWHKARIAL   67 (193)
T ss_pred             CeEEEEECCCCchhhCchHHHHHHHHHhC--CCceEEEEeccccCCCCCCCcc-----------hHHHHHHhHHHHHHHh
Confidence            57999999999999999999999999874  3699999988876543211111           12223444555566 8


Q ss_pred             cCCccccCCC-----CCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc--ccc
Q 027910           93 LGLEYNMSGL-----TGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE--FLD  165 (217)
Q Consensus        93 ~g~~~~~~~~-----~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~--~l~  165 (217)
                      +|+++..+..     +.+|..+++++.+|+.+|+++..+|+++||+++|.+|+++++.++|.++++++|+|.+.+  .++
T Consensus        68 ~g~~~~~~~~~~~~~~~~s~~a~~~~~aa~~~~~~~~~~~~~~l~~a~~~~~~~i~~~~~l~~ia~~~Gld~~~~~~~~~  147 (193)
T cd03025          68 TGQPFGEDYLELLLFDLDSAPASRAIKAARLQGPERLLEMLKAIQRAHYVEGRDLADTEVLRELAIELGLDVEEFLEDFQ  147 (193)
T ss_pred             cCCccCchhHhcccCCCCchHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCHHHHHHHHc
Confidence            8999887532     347999999999999888777999999999999999999999999999999999999988  889


Q ss_pred             CcccchhHHHHHHHHHhCCCCeecEEEECC
Q 027910          166 DPNSGLNEVHEELKKYSANISGVPHFVLNG  195 (217)
Q Consensus       166 ~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g  195 (217)
                      |+++++.+.++.+.+.++||+|||||+|++
T Consensus       148 s~~~~~~l~~~~~~a~~~gv~g~Ptfvv~~  177 (193)
T cd03025         148 SDEAKQAIQEDQKLARELGINGFPTLVLED  177 (193)
T ss_pred             ChHHHHHHHHHHHHHHHcCCCccCEEEEEe
Confidence            999999999999999999999999999963

FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.

>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=3.4e-26  Score=172.79  Aligned_cols=188  Identities=17%  Similarity=0.244  Sum_probs=146.7

Q ss_pred             eEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHHHHHHHhc
Q 027910           14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGL   93 (217)
Q Consensus        14 v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   93 (217)
                      ++|+|.|||.|.|||.+.|.+.++.+    ..+++|++++--+....   +.+...       ....+.+.+.+++++.+
T Consensus         2 ~~lhYifDPmCgWCyGa~Pll~~l~~----~~gl~~~L~~GGl~aG~---r~pl~~-------~~r~~i~~hd~rIa~lT   67 (212)
T COG3531           2 VTLHYIFDPMCGWCYGAAPLLEALSA----QPGLEVVLHGGGLRAGN---RRPLDP-------AFRAYILPHDQRIAQLT   67 (212)
T ss_pred             ceeEEecCcchhhhhCccHHHHHHHh----cCCceEEEecCCccCCC---CCCCCh-------HHHHHhhhhHHHHHHHh
Confidence            68999999999999999999988865    33789998886654321   111111       13466888899999999


Q ss_pred             CCccccC---------CCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc--
Q 027910           94 GLEYNMS---------GLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE--  162 (217)
Q Consensus        94 g~~~~~~---------~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~--  162 (217)
                      |.||...         ++..+|.++++++.+|+..+.+....++.+|++++|++|+||.+.++|.+++.+.||+.+.|  
T Consensus        68 GqpFg~~y~~~lL~~~~~v~DSepa~~ai~aA~~l~~r~~l~ml~aIQrA~YvEGrdi~~t~vl~~laa~~GL~~~~f~~  147 (212)
T COG3531          68 GQPFGQAYFDGLLRDTGFVYDSEPACRAILAARLLDGRGRLTMLHAIQRAHYVEGRDITQTEVLAELAAAIGLAAEEFDN  147 (212)
T ss_pred             CCccchhHHhhhhcccCccccccHHHHHHHHHHHhCcccchHHHHHHHHHHHhccccchhhHHHHHHHHHcCCCHHHHHH
Confidence            9999721         24589999999999999877665689999999999999999999999999999999999998  


Q ss_pred             ccc-CcccchhHHHH-HHHHHhCCCCeecEEEE--CCeee-e-cC--CCCHHHHHHHHHHH
Q 027910          163 FLD-DPNSGLNEVHE-ELKKYSANISGVPHFVL--NGKHE-L-SG--GQPPEVYLRAFQVA  215 (217)
Q Consensus       163 ~l~-~~~~~~~~~~~-~~~a~~~gv~g~Pt~vv--~g~~~-~-~G--~~~~~~l~~~i~~~  215 (217)
                      ..+ +.+......++ ....++.|+.|+|||++  ||+.. + .|  ..+++.|...|.+.
T Consensus       148 ~f~~s~~~~~~~~a~~r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~  208 (212)
T COG3531         148 AFDQSGAARQAHIADSRRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQR  208 (212)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHH
Confidence            444 44444444444 66789999999999999  67743 3 45  45678887777653

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=99.94  E-value=9.1e-26  Score=174.02  Aligned_cols=143  Identities=20%  Similarity=0.201  Sum_probs=122.2

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHHHHHH
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVF   90 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a   90 (217)
                      ..+++|.+|+||.||||+.+++.+.+++++++.  ++.++++|+.+....                              
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~------------------------------   61 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK--DVKFEKVPVVFGGGE------------------------------   61 (178)
T ss_pred             CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC--CceEEEcCCcccccc------------------------------
Confidence            789999999999999999999999999998753  688888888653310                              


Q ss_pred             HhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc--cccCcc
Q 027910           91 RGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE--FLDDPN  168 (217)
Q Consensus        91 ~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~--~l~~~~  168 (217)
                                     +..+.++..++..+|.  .++++.++|+++|.++.++.+.+.|.+++.++|++.++|  .+++++
T Consensus        62 ---------------~~~aa~a~~aa~~~~~--~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gl~~~~~~~~~~s~~  124 (178)
T cd03019          62 ---------------GEPLARAFYAAEALGL--EDKLHAALFEAIHEKRKRLLDPDDIRKIFLSQGVDKKKFDAAYNSFS  124 (178)
T ss_pred             ---------------chHHHHHHHHHHHcCc--HhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCHHHHHHHHhCHH
Confidence                           1234456666666676  889999999999999999998999999999999999998  888988


Q ss_pred             cchhHHHHHHHHHhCCCCeecEEEECCeeeecCC
Q 027910          169 SGLNEVHEELKKYSANISGVPHFVLNGKHELSGG  202 (217)
Q Consensus       169 ~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~  202 (217)
                      +.+.+.++.+.+.+.||+|||||+|||++.+.|.
T Consensus       125 ~~~~i~~~~~~~~~~gi~gTPt~iInG~~~~~~~  158 (178)
T cd03019         125 VKALVAKAEKLAKKYKITGVPAFVVNGKYVVNPS  158 (178)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCeEEECCEEEEChh
Confidence            9899999999999999999999999999766543

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C

Probab=99.94  E-value=9.9e-27  Score=179.25  Aligned_cols=166  Identities=20%  Similarity=0.256  Sum_probs=108.5

Q ss_pred             EEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHHHHHHHhcCCc
Q 027910           17 DVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLE   96 (217)
Q Consensus        17 ~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~   96 (217)
                      .+|+||+|+|||..++.++++..+|+.  .+++++.|..+-+....   .+    .                   ..+++
T Consensus         1 y~F~dPlc~~C~~~E~~l~kl~~~~~~--~i~~~~i~~~~~~~~~~---~~----~-------------------~~~~~   52 (176)
T PF13743_consen    1 YLFVDPLCSWCWGFEPELRKLKEEYGN--KIEFRFIPGGLMPDIND---FM----P-------------------RMPIN   52 (176)
T ss_dssp             -EEE-TT-HHHHHHHHHHHHHHHHS-T--TEEEEEEE--SS-S--S---B-------------------------H----
T ss_pred             CeeeCCCChHHHHhHHHHHHHHHHcCC--cEEEEEEEccchHHHHH---HH----H-------------------hcCCC
Confidence            379999999999999999999999875  68888888775443211   00    0                   01111


Q ss_pred             cc--cCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc--cccCcccchh
Q 027910           97 YN--MSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE--FLDDPNSGLN  172 (217)
Q Consensus        97 ~~--~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~--~l~~~~~~~~  172 (217)
                      .+  .+....+|+.++++++||+.||+.++.+|+.+|+++++.+++++++.++|.++|+++|||.+.|  .+.|+.+++.
T Consensus        53 ~~~~~~~~~~~~y~a~la~kAA~~qg~k~~~~fL~~lQ~a~~~~~~~~s~~~~l~~iA~~~gLD~~~F~~d~~S~~~~~~  132 (176)
T PF13743_consen   53 GDFWRNEPRSSSYPACLAYKAAQLQGKKKARRFLRALQEALFLEGKNYSDEELLLEIAEELGLDVEMFKEDLHSDEAKQA  132 (176)
T ss_dssp             TTHHHS--BS--HHHHHHHHHHHTTT-H--HHHHHHHHHHHHTS---TTSHHHHHHHHHHTT--HHHHHHHHTSHHHHHH
T ss_pred             HHHhcCCCCCCchHHHHHHHHHHHhChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCCCHHHHHHHHhChHHHHH
Confidence            11  1123467899999999999999999999999999999999999999999999999999999999  8999999999


Q ss_pred             HHHHHHHHHhCCCCeecEEEECC------eeeecCCCCHHHHHH
Q 027910          173 EVHEELKKYSANISGVPHFVLNG------KHELSGGQPPEVYLR  210 (217)
Q Consensus       173 ~~~~~~~a~~~gv~g~Pt~vv~g------~~~~~G~~~~~~l~~  210 (217)
                      +.+|.+.|+++||.++||+||.+      ..++.|..+++.+++
T Consensus       133 ~~~D~~la~~m~I~~~Ptlvi~~~~~~~~g~~i~g~~~~~~~~~  176 (176)
T PF13743_consen  133 FQEDQQLAREMGITGFPTLVIFNENNEEYGILIEGYYSYEVYEQ  176 (176)
T ss_dssp             HHHHHHHHHHTT-SSSSEEEEE----------------------
T ss_pred             HHHHHHHHHHcCCCCCCEEEEEecccccccccccccccccccCC
Confidence            99999999999999999999932      347799999988764

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=99.94  E-value=2.2e-25  Score=167.55  Aligned_cols=152  Identities=18%  Similarity=0.253  Sum_probs=124.5

Q ss_pred             ccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHHH
Q 027910            8 SAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMT   87 (217)
Q Consensus         8 ~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   87 (217)
                      |+..++++|++|+||.||||+.+++.+.+++.+++   +++++++++++...                            
T Consensus         1 G~~~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~---~~~~~~~~~p~~~~----------------------------   49 (154)
T cd03023           1 GNPNGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP---DVRVVFKEFPILGE----------------------------   49 (154)
T ss_pred             CCCCCCEEEEEEECCCChhHHHhhHHHHHHHHHCC---CceEEEEeCCccCc----------------------------
Confidence            56778999999999999999999999999887654   48899998875321                            


Q ss_pred             HHHHhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc--ccc
Q 027910           88 EVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE--FLD  165 (217)
Q Consensus        88 ~~a~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~--~l~  165 (217)
                                       ++..+++++.++...+++.++++++++|..    + +..+.+.|.+++.+.|++.+++  +++
T Consensus        50 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~----~-~~~~~~~l~~~a~~~gl~~~~~~~~~~  107 (154)
T cd03023          50 -----------------SSVLAARVALAVWKNGPGKYLEFHNALMAT----R-GRLNEESLLRIAKKAGLDEAKLKKDMD  107 (154)
T ss_pred             -----------------chHHHHHHHHHHHHhChhHHHHHHHHHHhc----C-CCCCHHHHHHHHHHcCCCHHHHHHHhh
Confidence                             122234455555544555688999888863    2 3457888999999999999988  888


Q ss_pred             CcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHH
Q 027910          166 DPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQ  213 (217)
Q Consensus       166 ~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~  213 (217)
                      ++++.+.+.++.+.+.+.||+|||||+|||+ .+.|..+++.|.++|+
T Consensus       108 ~~~~~~~~~~~~~~~~~~gi~gtPt~~v~g~-~~~G~~~~~~l~~~i~  154 (154)
T cd03023         108 DPEIEATIDKNRQLARALGITGTPAFIIGDT-VIPGAVPADTLKEAID  154 (154)
T ss_pred             ChHHHHHHHHHHHHHHHcCCCcCCeEEECCE-EecCCCCHHHHHHHhC
Confidence            8889999999999999999999999999998 7899999999998874

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=99.90  E-value=2.8e-22  Score=158.60  Aligned_cols=155  Identities=15%  Similarity=0.133  Sum_probs=116.3

Q ss_pred             CcceEEEEEecccCchhhhhHHHH---HHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHHH
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNL---DKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMT   87 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l---~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   87 (217)
                      ..+.+|.+||||.||||+.+++.+   ..+.+.+++  ++.++.+|+.+.+.   .+                       
T Consensus        36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~--~v~~~~~~~~f~~~---~~-----------------------   87 (207)
T PRK10954         36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE--GTKMTKYHVEFLGP---LG-----------------------   87 (207)
T ss_pred             CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC--CCeEEEecccccch---hh-----------------------
Confidence            346789999999999999999866   666676654  56777766654220   00                       


Q ss_pred             HHHHhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc--ccc
Q 027910           88 EVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE--FLD  165 (217)
Q Consensus        88 ~~a~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~--~l~  165 (217)
                                         ..+.++..+|+..+.  ...++.++|++++. ++++.+.+.|.+++.+.|+|.+++  +++
T Consensus        88 -------------------~~~~~a~~~a~~~~~--~~k~~~~lf~~i~~-~~~~~~~~~L~~~a~~~Gld~~~f~~~l~  145 (207)
T PRK10954         88 -------------------KELTQAWAVAMALGV--EDKVTPPLFEGVQK-TQTIQSAADIRDVFIKAGVKGEDYDAAWN  145 (207)
T ss_pred             -------------------HHHHHHHHHHHHhCc--HHHHHHHHHHHHHc-cCCCCCHHHHHHHHHHcCCCHHHHHHHHh
Confidence                               001123333344454  56688889998865 567889999999999999999998  899


Q ss_pred             CcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCC--------CHHHHHHHHHHH
Q 027910          166 DPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQ--------PPEVYLRAFQVA  215 (217)
Q Consensus       166 ~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~--------~~~~l~~~i~~~  215 (217)
                      ++++.+.+.++.+.+.+.||+|||||+|||+|.+....        +.+.+...|+-+
T Consensus       146 s~~~~~~v~~~~~~a~~~gI~gtPtfiInGky~v~~~~~~~~~~~~~~~~~~~~i~~L  203 (207)
T PRK10954        146 SFVVKSLVAQQEKAAADLQLRGVPAMFVNGKYMVNNQGMDTSSMDVYVQQYADVVKFL  203 (207)
T ss_pred             ChHHHHHHHHHHHHHHHcCCCCCCEEEECCEEEEccccccccchhhhHHHHHHHHHHH
Confidence            99999999999999999999999999999998774222        457777776544

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=99.87  E-value=1.4e-21  Score=148.31  Aligned_cols=158  Identities=18%  Similarity=0.190  Sum_probs=118.1

Q ss_pred             cccCcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHH
Q 027910            3 QSVSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGI   82 (217)
Q Consensus         3 ~~~~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~   82 (217)
                      .++..|.+..+++|++|+||.||+|+.+++.+.+++++|-+...+.++++|+++...         .             
T Consensus         3 ~~~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~---------~-------------   60 (162)
T PF13462_consen    3 YDPTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKH---------S-------------   60 (162)
T ss_dssp             TSEEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHH---------H-------------
T ss_pred             CCCeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccch---------h-------------
Confidence            456789999999999999999999999999999999998545689999999975321         0             


Q ss_pred             HHHHHHHHHhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc
Q 027910           83 IARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE  162 (217)
Q Consensus        83 ~~~~~~~a~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~  162 (217)
                                             +..+..++.++..++ ..++.+.+.+|+..    .+....   .++++..|.+.+.+
T Consensus        61 -----------------------~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~---~~i~~~~~~~~~~~  109 (162)
T PF13462_consen   61 -----------------------SLRAAMAAECVADQG-KYFWFFHELLFSQQ----ENFENK---KDIAANAGGSNEQF  109 (162)
T ss_dssp             -----------------------HHHHHHHHHHHHHHT-HHHHHHHHHHHHHC----HSTSSH---HHHHHHTTSHHHHH
T ss_pred             -----------------------HHHHHHHHHHHHHHh-HHHHHHHHHHHHhh----hccchh---HHHHHHcCCCHHHH
Confidence                                   122344555555556 44555555566542    222223   34555566666767


Q ss_pred             --cccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHHH
Q 027910          163 --FLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQV  214 (217)
Q Consensus       163 --~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~~  214 (217)
                        ++.++++...+..+.+.+.+.||.|||||+|||++ +.|..+++.|..+|++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~inG~~-~~~~~~~~~l~~~Id~  162 (162)
T PF13462_consen  110 NKCLNSDEIKAQLEADSQLARQLGITGTPTFFINGKY-VVGPYTIEELKELIDK  162 (162)
T ss_dssp             HHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEETTCE-EETTTSHHHHHHHHHH
T ss_pred             HHHhhchHHHHHHHHHHHHHHHcCCccccEEEECCEE-eCCCCCHHHHHHHHcC
Confidence              78888899999999999999999999999999995 7889999999999985

...

>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=1.2e-15  Score=123.65  Aligned_cols=166  Identities=15%  Similarity=0.107  Sum_probs=111.8

Q ss_pred             ccCcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHH
Q 027910            4 SVSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGII   83 (217)
Q Consensus         4 ~~~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~   83 (217)
                      .+..|....++++.+|+|+.||||-...+.+++..   .....++++|++|.+.+...       .+             
T Consensus        76 ~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~---i~~~~~~~~~~~~~f~~~~~-------~~-------------  132 (244)
T COG1651          76 DVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKY---IDDGKVRLVLREFPFLDPAC-------PY-------------  132 (244)
T ss_pred             cccccCCCCCceEEEEecCcCccHHHHHHHHHHHh---hhcCCCceEEEEeecCCCCc-------HH-------------
Confidence            34467777799999999999999977667666643   33456799999988644210       11             


Q ss_pred             HHHHHHHHhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc-
Q 027910           84 ARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE-  162 (217)
Q Consensus        84 ~~~~~~a~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~-  162 (217)
                                            +..+++++.++..++...++.|++++|+..-..+..-.........+...+++ ..+ 
T Consensus       133 ----------------------~~~a~~~~~~~~~~~~~~y~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  189 (244)
T COG1651         133 ----------------------CRRAAQAARCAADQGIVRYWAFHDALFGSQAEAWAASILCAKDLAKADLAALD-EGKK  189 (244)
T ss_pred             ----------------------HHHHHHHHHHhccccchhHHHHHHHHhhccccchhhhhhhhhhhhhhhHHHHH-hhhh
Confidence                                  12244555555555534599999999986532222211111111122222222 222 


Q ss_pred             -cccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHHHHh
Q 027910          163 -FLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       163 -~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~~~~  216 (217)
                       +++.....+.+.++.+.+.+.|+.|||||+|+|+ .+.|..+.+.|..+|+.++
T Consensus       190 ~~~~~~~~~~~i~~~~~~a~~~gv~gTPt~~v~~~-~~~g~~~~~~l~~~i~~~~  243 (244)
T COG1651         190 AKLNQKACDALIAKNYKLAQQLGVNGTPTFIVNGK-LVPGLPDLDELKAIIDEAL  243 (244)
T ss_pred             hccChHHHHHHHHHHHHHHHhcCCCcCCeEEECCe-eecCCCCHHHHHHHHHHhh
Confidence             4444456788999999999999999999999998 7899999999999998764

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=99.62  E-value=7.3e-15  Score=101.30  Aligned_cols=92  Identities=28%  Similarity=0.491  Sum_probs=71.6

Q ss_pred             EEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHHHHHHHhcCC
Q 027910           16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGL   95 (217)
Q Consensus        16 i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~   95 (217)
                      |++|+|+.|||||.+++.+++++..+  ..+++++|+|+.+.+...                                  
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~----------------------------------   44 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYAD--DGGVRVVYRPFPLLGGMP----------------------------------   44 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhc--CCcEEEEEeccccCCCCC----------------------------------
Confidence            57999999999999999999987443  347999999998866321                                  


Q ss_pred             ccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccccccCcccchhHHH
Q 027910           96 EYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPNSGLNEVH  175 (217)
Q Consensus        96 ~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~~l~~~~~~~~~~~  175 (217)
                              +.+..+++++.++..++.  ..++.+++                                           +
T Consensus        45 --------~~~~~~~~~~~~~~~~~~--~~~~~~~l-------------------------------------------~   71 (98)
T cd02972          45 --------PNSLAAARAALAAAAQGK--FEALHEAL-------------------------------------------A   71 (98)
T ss_pred             --------cchHHHHHHHHHHHHcCc--HHHHHHHH-------------------------------------------H
Confidence                    123445566666665544  77777777                                           7


Q ss_pred             HHHHHHhCCCCeecEEEECCe
Q 027910          176 EELKKYSANISGVPHFVLNGK  196 (217)
Q Consensus       176 ~~~~a~~~gv~g~Pt~vv~g~  196 (217)
                      +.+.+.+.|++||||++++|+
T Consensus        72 ~~~~~~~~g~~g~Pt~v~~~~   92 (98)
T cd02972          72 DTALARALGVTGTPTFVVNGE   92 (98)
T ss_pred             HHHHHHHcCCCCCCEEEECCE
Confidence            888899999999999999983

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=99.62  E-value=8.5e-15  Score=118.87  Aligned_cols=135  Identities=11%  Similarity=0.050  Sum_probs=89.1

Q ss_pred             CcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHH
Q 027910            6 SSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIAR   85 (217)
Q Consensus         6 ~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   85 (217)
                      .-|+.+.+.+|++|+||.||||..++..+.++++    ..+++++|.|+++-.  +                        
T Consensus       111 ~~g~~~ak~~I~vFtDp~CpyC~kl~~~l~~~~~----~g~V~v~~ip~~~l~--~------------------------  160 (251)
T PRK11657        111 LDGKADAPRIVYVFADPNCPYCKQFWQQARPWVD----SGKVQLRHILVGIIK--P------------------------  160 (251)
T ss_pred             cccCCCCCeEEEEEECCCChhHHHHHHHHHHHhh----cCceEEEEEeccccC--c------------------------
Confidence            3466788999999999999999999999887765    345888888765311  0                        


Q ss_pred             HHHHHHhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCccccccc
Q 027910           86 MTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLD  165 (217)
Q Consensus        86 ~~~~a~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~~l~  165 (217)
                                         +|.....++.+++  ++.+.+..+...+..                    .|+.+.  ...
T Consensus       161 -------------------~S~~~a~ailca~--d~~~a~~~~~~~~~~--------------------~~~~~~--~~~  197 (251)
T PRK11657        161 -------------------DSPGKAAAILAAK--DPAKALQEYEASGGK--------------------LGLKPP--ASI  197 (251)
T ss_pred             -------------------chHHHHHHHHhcc--CHHHHHHHHHHhhhc--------------------cCCCcc--ccC
Confidence                               1111122333332  232233333332210                    222221  122


Q ss_pred             CcccchhHHHHHHHHHhCCCCeecEEEE-C--Cee-eecCCCCHHHHHHHHH
Q 027910          166 DPNSGLNEVHEELKKYSANISGVPHFVL-N--GKH-ELSGGQPPEVYLRAFQ  213 (217)
Q Consensus       166 ~~~~~~~~~~~~~~a~~~gv~g~Pt~vv-~--g~~-~~~G~~~~~~l~~~i~  213 (217)
                      +++..+.+.++.+.+.++|++|||+||+ |  |+. .+.|+.+.+.|.+.|.
T Consensus       198 ~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~  249 (251)
T PRK11657        198 PAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMG  249 (251)
T ss_pred             CHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhC
Confidence            4456778999999999999999999999 4  543 5789999999998875

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=99.55  E-value=1.9e-13  Score=109.76  Aligned_cols=128  Identities=17%  Similarity=0.262  Sum_probs=84.2

Q ss_pred             ccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHHH
Q 027910            8 SAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMT   87 (217)
Q Consensus         8 ~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   87 (217)
                      ++++.+.+|.+|+||.||||..+++.+.++.+     .+++|.|.+|++.+..+.                         
T Consensus       103 g~~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~-----~~v~v~~~~~P~~g~~~~-------------------------  152 (232)
T PRK10877        103 KAPQEKHVITVFTDITCGYCHKLHEQMKDYNA-----LGITVRYLAFPRQGLDSQ-------------------------  152 (232)
T ss_pred             cCCCCCEEEEEEECCCChHHHHHHHHHHHHhc-----CCeEEEEEeccCCCCCch-------------------------
Confidence            55678999999999999999999998877643     358888887776432110                         


Q ss_pred             HHHHhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccccccCc
Q 027910           88 EVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDP  167 (217)
Q Consensus        88 ~~a~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~~l~~~  167 (217)
                                        +...++.+.++  .++  ...+.+++      .+..+..               .       
T Consensus       153 ------------------a~~~a~~iwca--~d~--~~a~~~~~------~~~~~~~---------------~-------  182 (232)
T PRK10877        153 ------------------AEKDMKSIWCA--ADR--NKAFDDAM------KGKDVSP---------------A-------  182 (232)
T ss_pred             ------------------HHHHHHHHhcC--CCH--HHHHHHHH------cCCCCCc---------------c-------
Confidence                              00011111121  122  22232222      1222211               0       


Q ss_pred             ccchhHHHHHHHHHhCCCCeecEEEE-CCeeeecCCCCHHHHHHHHHHHh
Q 027910          168 NSGLNEVHEELKKYSANISGVPHFVL-NGKHELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       168 ~~~~~~~~~~~~a~~~gv~g~Pt~vv-~g~~~~~G~~~~~~l~~~i~~~~  216 (217)
                      .....+.++.+.++++||.|||||++ ||+ .+.|+.+.+.|++.|++..
T Consensus       183 ~c~~~v~~~~~la~~lgi~gTPtiv~~~G~-~~~G~~~~~~L~~~l~~~~  231 (232)
T PRK10877        183 SCDVDIADHYALGVQFGVQGTPAIVLSNGT-LVPGYQGPKEMKAFLDEHQ  231 (232)
T ss_pred             cccchHHHhHHHHHHcCCccccEEEEcCCe-EeeCCCCHHHHHHHHHHcc
Confidence            12235788899999999999999999 777 7899999999999998653

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=99.42  E-value=2.9e-12  Score=100.54  Aligned_cols=126  Identities=15%  Similarity=0.230  Sum_probs=79.7

Q ss_pred             CcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHH
Q 027910            6 SSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIAR   85 (217)
Q Consensus         6 ~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   85 (217)
                      .-+....+.+|++|+|+.||||+.+++.+.+    .  ..+++|.++++++... +                        
T Consensus        71 ~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~----~--~~~v~v~~~~~p~~~~-~------------------------  119 (197)
T cd03020          71 VYGKGNGKRVVYVFTDPDCPYCRKLEKELKP----N--ADGVTVRIFPVPILGL-P------------------------  119 (197)
T ss_pred             EEcCCCCCEEEEEEECCCCccHHHHHHHHhh----c--cCceEEEEEEcCcCCC-c------------------------
Confidence            3456678999999999999999999998875    1  3478999998876432 1                        


Q ss_pred             HHHHHHhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCccccccc
Q 027910           86 MTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLD  165 (217)
Q Consensus        86 ~~~~a~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~~l~  165 (217)
                                         +|....+.+.++.  ++  ...+ +.++.     +....              ..      
T Consensus       120 -------------------~s~~~a~~i~ca~--d~--~~a~-~~~~~-----~~~~~--------------~~------  150 (197)
T cd03020         120 -------------------DSTAKAAAIWCAK--DR--AKAW-TDAMS-----GGKVP--------------PP------  150 (197)
T ss_pred             -------------------cHHHHHHHhhccc--CH--HHHH-HHHHh-----CCCCC--------------CC------
Confidence                               0111122222221  11  2111 11111     21111              11      


Q ss_pred             CcccchhHHHHHHHHHhCCCCeecEEEEC-CeeeecCCCCHHHHHHHH
Q 027910          166 DPNSGLNEVHEELKKYSANISGVPHFVLN-GKHELSGGQPPEVYLRAF  212 (217)
Q Consensus       166 ~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~-g~~~~~G~~~~~~l~~~i  212 (217)
                      .+.....+.++.+.++++||.|||||+++ |+ .+.|+.+.+.|.+.|
T Consensus       151 ~~~~~~~i~~~~~l~~~~gi~gtPtii~~~G~-~~~G~~~~~~l~~~L  197 (197)
T cd03020         151 AASCDNPVAANLALGRQLGVNGTPTIVLADGR-VVPGAPPAAQLEALL  197 (197)
T ss_pred             ccccCchHHHHHHHHHHcCCCcccEEEECCCe-EecCCCCHHHHHhhC
Confidence            11223457788899999999999999995 65 789999988887654

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=98.33  E-value=4e-06  Score=59.33  Aligned_cols=35  Identities=26%  Similarity=0.452  Sum_probs=25.0

Q ss_pred             HHHHhCCCCeecEEEE-C--Ce--eeecCCCCHHHHHHHH
Q 027910          178 LKKYSANISGVPHFVL-N--GK--HELSGGQPPEVYLRAF  212 (217)
Q Consensus       178 ~~a~~~gv~g~Pt~vv-~--g~--~~~~G~~~~~~l~~~i  212 (217)
                      +.++..||.||||+++ +  |+  +.+.|+.+.++|.+.|
T Consensus        73 ~l~~~~~v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L  112 (112)
T PF13098_consen   73 ELAQRYGVNGTPTIVFLDKDGKIVYRIPGYLSPEELLKML  112 (112)
T ss_dssp             HHHHHTT--SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred             HHHHHcCCCccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence            5788999999999988 3  55  3468999999998875

...

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=98.16  E-value=2.5e-05  Score=51.92  Aligned_cols=36  Identities=28%  Similarity=0.408  Sum_probs=31.3

Q ss_pred             HHhCCCCeecEEEECCeeeecCCCCHHHHHHHHHHH
Q 027910          180 KYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       180 a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~~~  215 (217)
                      +.+.|+.++||++++|+..+.|..+.+.+.+.|+++
T Consensus        46 ~~~~~v~~vPt~~~~g~~~~~G~~~~~~l~~~l~~~   81 (82)
T TIGR00411        46 AMEYGIMAVPAIVINGDVEFIGAPTKEELVEAIKKR   81 (82)
T ss_pred             HHHcCCccCCEEEECCEEEEecCCCHHHHHHHHHhh
Confidence            456899999999999987788999999999998865

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=97.51  E-value=0.00029  Score=46.48  Aligned_cols=57  Identities=14%  Similarity=0.251  Sum_probs=39.8

Q ss_pred             HHHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCC-CHHHHHHHH
Q 027910          146 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQ-PPEVYLRAF  212 (217)
Q Consensus       146 ~~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~-~~~~l~~~i  212 (217)
                      ..+.+++++.|.+.....+++          ..++.+.|+.++||+++||+..+.|.. +.+.+.+.|
T Consensus        18 ~~~~~~~~e~~~~~~~~~v~~----------~~~a~~~~v~~vPti~i~G~~~~~G~~~~~~~l~~~l   75 (76)
T TIGR00412        18 KNVKKAVEELGIDAEFEKVTD----------MNEILEAGVTATPGVAVDGELVIMGKIPSKEEIKEIL   75 (76)
T ss_pred             HHHHHHHHHcCCCeEEEEeCC----------HHHHHHcCCCcCCEEEECCEEEEEeccCCHHHHHHHh
Confidence            566788888887644224442          223667999999999999986778864 447777665

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=97.19  E-value=0.00053  Score=45.15  Aligned_cols=39  Identities=21%  Similarity=0.239  Sum_probs=29.1

Q ss_pred             HHHHHHHhCCCCeecEEEECCeeeecC-CCCHHHHHHHHH
Q 027910          175 HEELKKYSANISGVPHFVLNGKHELSG-GQPPEVYLRAFQ  213 (217)
Q Consensus       175 ~~~~~a~~~gv~g~Pt~vv~g~~~~~G-~~~~~~l~~~i~  213 (217)
                      .+.+...+.|+.++|+++|||+..+.| ..+.+++.++|+
T Consensus        37 ~~~~~~~~ygv~~vPalvIng~~~~~G~~p~~~el~~~l~   76 (76)
T PF13192_consen   37 EDFEEIEKYGVMSVPALVINGKVVFVGRVPSKEELKELLE   76 (76)
T ss_dssp             TTHHHHHHTT-SSSSEEEETTEEEEESS--HHHHHHHHHH
T ss_pred             cCHHHHHHcCCCCCCEEEECCEEEEEecCCCHHHHHHHhC
Confidence            344555899999999999999977899 656788887774

...

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=97.18  E-value=0.011  Score=46.87  Aligned_cols=40  Identities=25%  Similarity=0.312  Sum_probs=31.7

Q ss_pred             HHHHHHhCCCCeecEEEECCeee-ecCCCCHHHHHHHHHHH
Q 027910          176 EELKKYSANISGVPHFVLNGKHE-LSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       176 ~~~~a~~~gv~g~Pt~vv~g~~~-~~G~~~~~~l~~~i~~~  215 (217)
                      +...+.+.||.++||++|+++.. +.|..+.++|.+.|.++
T Consensus       175 ~~~~~~~~~V~~vPtl~i~~~~~~~~G~~~~~~l~~~l~~~  215 (215)
T TIGR02187       175 NPDLAEKYGVMSVPKIVINKGVEEFVGAYPEEQFLEYILSA  215 (215)
T ss_pred             CHHHHHHhCCccCCEEEEecCCEEEECCCCHHHHHHHHHhC
Confidence            34566789999999999975423 78999999999988753

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=97.11  E-value=0.014  Score=42.08  Aligned_cols=29  Identities=21%  Similarity=0.300  Sum_probs=25.5

Q ss_pred             cceEEEEEecccCchhhhhHHHHHHHHHh
Q 027910           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIAS   40 (217)
Q Consensus        12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~   40 (217)
                      ....|.+|+-..||||..+.|.|.++.++
T Consensus        23 ~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~   51 (122)
T TIGR01295        23 KETATFFIGRKTCPYCRKFSGTLSGVVAQ   51 (122)
T ss_pred             CCcEEEEEECCCChhHHHHhHHHHHHHHh
Confidence            45578899999999999999999999874

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=96.80  E-value=0.0037  Score=45.68  Aligned_cols=64  Identities=14%  Similarity=0.069  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHcC-CCcccc-cccCcccchhHHHHHHHHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHHh
Q 027910          145 KEFLVECARKVG-VEGAAE-FLDDPNSGLNEVHEELKKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       145 ~~~L~~ia~~~G-ld~~~~-~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~~  216 (217)
                      .-+|.+++++.+ -+. .+ .++       +.++...+.+.||.|+|||++  ||++  .+.|..+.++|.+.|+++.
T Consensus        55 avvleELa~e~~~~~v-~~akVD-------iD~~~~LA~~fgV~siPTLl~FkdGk~v~~i~G~~~k~~l~~~I~~~L  124 (132)
T PRK11509         55 PVMIGELLREFPDYTW-QVAIAD-------LEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLV  124 (132)
T ss_pred             HHHHHHHHHHhcCCce-EEEEEE-------CCCCHHHHHHcCCccCCEEEEEECCEEEEEEeCcCCHHHHHHHHHHHh
Confidence            356667877764 211 12 222       234567789999999999988  7874  3679999999999998764

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=96.70  E-value=0.058  Score=40.97  Aligned_cols=32  Identities=9%  Similarity=0.077  Sum_probs=28.2

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~   42 (217)
                      ..+++|.+|+...||.|-...+.|.++.++|+
T Consensus        24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~   55 (171)
T cd02969          24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYG   55 (171)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHHh
Confidence            56788999999999999988889999988876

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=96.47  E-value=0.11  Score=40.04  Aligned_cols=37  Identities=19%  Similarity=0.380  Sum_probs=27.6

Q ss_pred             HHhCCCCeec-EEEEC--Ce--eeecCCCCHHHHHHHHHHHh
Q 027910          180 KYSANISGVP-HFVLN--GK--HELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       180 a~~~gv~g~P-t~vv~--g~--~~~~G~~~~~~l~~~i~~~~  216 (217)
                      +.+.|+.|+| ||+|+  |+  +...|..+.+.|+..|+.+.
T Consensus       135 ~~~~gv~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~  176 (185)
T PRK15412        135 GLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLW  176 (185)
T ss_pred             HHhcCCCcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHH
Confidence            4467899999 66775  54  44578888898888887653

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=96.45  E-value=0.052  Score=41.04  Aligned_cols=35  Identities=14%  Similarity=-0.059  Sum_probs=28.4

Q ss_pred             cCCcceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910            9 AGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD   43 (217)
Q Consensus         9 ~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~   43 (217)
                      .-..+.++.+|+...||.|-...+.+.++.++|.+
T Consensus        58 ~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~   92 (173)
T PRK03147         58 DLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKE   92 (173)
T ss_pred             HcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhc
Confidence            33456677788899999999989999999888864

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=96.45  E-value=0.078  Score=48.18  Aligned_cols=36  Identities=22%  Similarity=0.206  Sum_probs=30.5

Q ss_pred             HHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHH
Q 027910          177 ELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAF  212 (217)
Q Consensus       177 ~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i  212 (217)
                      .+.+.+.||.+||+++|||+....|..+.++++..|
T Consensus       519 ~~~~~~~~v~~vP~~~i~~~~~~~G~~~~~~~~~~~  554 (555)
T TIGR03143       519 PDLKDEYGIMSVPAIVVDDQQVYFGKKTIEEMLELI  554 (555)
T ss_pred             HHHHHhCCceecCEEEECCEEEEeeCCCHHHHHHhh
Confidence            345668999999999999987778988999888765

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=96.43  E-value=0.0054  Score=41.71  Aligned_cols=32  Identities=28%  Similarity=0.180  Sum_probs=25.5

Q ss_pred             HHHHhCCCCeecEEEECCeeeecCCCCHHHHH
Q 027910          178 LKKYSANISGVPHFVLNGKHELSGGQPPEVYL  209 (217)
Q Consensus       178 ~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~  209 (217)
                      +.+.+.||.++|||++||+....|..+.++++
T Consensus        56 e~a~~~~V~~vPt~vidG~~~~~G~~~~~e~~   87 (89)
T cd03026          56 DEVEERGIMSVPAIFLNGELFGFGRMTLEEIL   87 (89)
T ss_pred             HHHHHcCCccCCEEEECCEEEEeCCCCHHHHh
Confidence            34568899999999999997778977766654

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=96.40  E-value=0.071  Score=47.98  Aligned_cols=39  Identities=26%  Similarity=0.225  Sum_probs=32.7

Q ss_pred             HHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHHH
Q 027910          176 EELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQV  214 (217)
Q Consensus       176 ~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~~  214 (217)
                      ..+.+.+.++.+||++++||+....|..+.++++..+.+
T Consensus       158 ~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~  196 (517)
T PRK15317        158 FQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDT  196 (517)
T ss_pred             CHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhc
Confidence            344567889999999999998777899999999888764

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=96.06  E-value=0.0096  Score=42.86  Aligned_cols=41  Identities=5%  Similarity=0.038  Sum_probs=33.9

Q ss_pred             HHHHHHhCCCCeecEEEE--CCe-eeecCCCCHHHHHHHHHHHh
Q 027910          176 EELKKYSANISGVPHFVL--NGK-HELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       176 ~~~~a~~~gv~g~Pt~vv--~g~-~~~~G~~~~~~l~~~i~~~~  216 (217)
                      +...|.+.||.|+||+++  ||+ ..+.|..+.+.|.+.|+++-
T Consensus        76 ~~~La~~~~I~~iPTl~lfk~G~~v~~~G~~~~~~l~~~l~~~~  119 (120)
T cd03065          76 DAKVAKKLGLDEEDSIYVFKDDEVIEYDGEFAADTLVEFLLDLI  119 (120)
T ss_pred             CHHHHHHcCCccccEEEEEECCEEEEeeCCCCHHHHHHHHHHHh
Confidence            456788999999999977  776 22579999999999998863

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=96.02  E-value=0.018  Score=39.14  Aligned_cols=40  Identities=13%  Similarity=0.059  Sum_probs=32.7

Q ss_pred             CCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEe
Q 027910           10 GKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWH   52 (217)
Q Consensus        10 ~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~   52 (217)
                      -.+|++|.+|+++.||||-...+.+.++.+.++   ++++...
T Consensus        10 l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~---~i~~~~v   49 (89)
T cd03026          10 LNGPINFETYVSLSCHNCPDVVQALNLMAVLNP---NIEHEMI   49 (89)
T ss_pred             cCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC---CceEEEE
Confidence            467999999999999999999999999887654   3555443

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=96.01  E-value=0.23  Score=44.68  Aligned_cols=39  Identities=23%  Similarity=0.285  Sum_probs=32.6

Q ss_pred             HHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHHHH
Q 027910          177 ELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       177 ~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~~~  215 (217)
                      .+.+.+.++.+||+++|||+....|..+.+++.+.+...
T Consensus       160 ~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~  198 (515)
T TIGR03140       160 QDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEET  198 (515)
T ss_pred             HHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhc
Confidence            445678899999999999987778999999998877643

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.81  E-value=0.019  Score=42.88  Aligned_cols=43  Identities=30%  Similarity=0.512  Sum_probs=33.8

Q ss_pred             HHHHHHHHHhCCCCeecEEEE---CCe--eeecCCCCHHHHHHHHHHH
Q 027910          173 EVHEELKKYSANISGVPHFVL---NGK--HELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       173 ~~~~~~~a~~~gv~g~Pt~vv---~g~--~~~~G~~~~~~l~~~i~~~  215 (217)
                      .....+.|+..+|.||||||+   +|+  +.++|+-|++.|..+++=+
T Consensus       101 ~~s~~ELa~kf~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYV  148 (182)
T COG2143         101 KMSTEELAQKFAVRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLKYV  148 (182)
T ss_pred             eecHHHHHHHhccccCceEEEEcCCCCEEEecCCCCCHHHHHHHHHHH
Confidence            344556788999999999999   244  3468999999999988744

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=95.67  E-value=0.35  Score=35.97  Aligned_cols=45  Identities=16%  Similarity=0.147  Sum_probs=33.1

Q ss_pred             cCcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910            5 VSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR   50 (217)
Q Consensus         5 ~~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~   50 (217)
                      ++.+.-..++.|.+|+-..||.|-...+.|.++.++|++ .++.|.
T Consensus        15 ~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~-~~~~v~   59 (153)
T TIGR02540        15 VSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGP-SHFNVL   59 (153)
T ss_pred             ecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhh-CCeEEE
Confidence            333344456677778889999999999999999998874 345554

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=95.56  E-value=0.047  Score=34.62  Aligned_cols=31  Identities=26%  Similarity=0.265  Sum_probs=23.9

Q ss_pred             HHhCCCCeecEEEECCeeeecCCCCHHHHHHHH
Q 027910          180 KYSANISGVPHFVLNGKHELSGGQPPEVYLRAF  212 (217)
Q Consensus       180 a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i  212 (217)
                      ....|+.++|+++++|+ .+.|. +++.+.+.|
T Consensus        43 ~~~~~~~~vP~~~~~~~-~~~g~-~~~~i~~~i   73 (74)
T TIGR02196        43 LKVLGQRGVPVIVIGHK-IIVGF-DPEKLDQLL   73 (74)
T ss_pred             HHHhCCCcccEEEECCE-EEeeC-CHHHHHHHh
Confidence            34569999999999987 57886 667766655

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=95.48  E-value=0.27  Score=34.79  Aligned_cols=31  Identities=16%  Similarity=0.117  Sum_probs=24.7

Q ss_pred             cCCcceEEEEEecccCchhhhhHHHHHHHHH
Q 027910            9 AGKKLIRIDVSSDTVCPWCFVGKRNLDKAIA   39 (217)
Q Consensus         9 ~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~   39 (217)
                      ....+..|.+|+..-||.|....+.+.++.+
T Consensus        17 ~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~   47 (123)
T cd03011          17 SLSGKPVLVYFWATWCPVCRFTSPTVNQLAA   47 (123)
T ss_pred             HhCCCEEEEEEECCcChhhhhhChHHHHHHh
Confidence            3344778888888999999999998887765

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=95.40  E-value=0.69  Score=35.19  Aligned_cols=37  Identities=24%  Similarity=0.420  Sum_probs=28.0

Q ss_pred             HHhCCCCeec-EEEEC--Ce--eeecCCCCHHHHHHHHHHHh
Q 027910          180 KYSANISGVP-HFVLN--GK--HELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       180 a~~~gv~g~P-t~vv~--g~--~~~~G~~~~~~l~~~i~~~~  216 (217)
                      +...|+.|+| +|+|+  |+  +...|..+.++|++.|+++.
T Consensus       130 ~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~  171 (173)
T TIGR00385       130 GLDLGVYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAM  171 (173)
T ss_pred             HHhcCCeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence            4467889999 66775  65  34578889999999988764

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=95.36  E-value=0.06  Score=36.41  Aligned_cols=43  Identities=16%  Similarity=0.121  Sum_probs=34.7

Q ss_pred             cceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeec
Q 027910           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPF   54 (217)
Q Consensus        12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~   54 (217)
                      .++++.+|+..-||.|-...+.|.++.++|++..++++.+.+.
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~   43 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSL   43 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEe
Confidence            3688999999999999999999999999998544677776544

...

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=95.09  E-value=0.019  Score=36.37  Aligned_cols=23  Identities=35%  Similarity=0.514  Sum_probs=18.3

Q ss_pred             HHHhCCCCeecEEEECCeeeecC
Q 027910          179 KKYSANISGVPHFVLNGKHELSG  201 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv~g~~~~~G  201 (217)
                      .+.+.|+.++||++++|+....|
T Consensus        44 l~~~~~i~~vPti~i~~~~~~~g   66 (67)
T cd02973          44 LADEYGVMSVPAIVINGKVEFVG   66 (67)
T ss_pred             HHHHcCCcccCEEEECCEEEEec
Confidence            35578999999999999855555

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=95.02  E-value=0.034  Score=36.42  Aligned_cols=28  Identities=25%  Similarity=0.527  Sum_probs=24.7

Q ss_pred             eEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910           14 IRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (217)
Q Consensus        14 v~i~~y~D~~CP~cy~~~~~l~~~~~~~~   42 (217)
                      |+|++|+ .-||.|..+.+.++++.++++
T Consensus         1 m~i~~~a-~~C~~C~~~~~~~~~~~~e~~   28 (76)
T TIGR00412         1 MKIQIYG-TGCANCQMTEKNVKKAVEELG   28 (76)
T ss_pred             CEEEEEC-CCCcCHHHHHHHHHHHHHHcC
Confidence            4688888 999999999999999998764

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.92  E-value=0.031  Score=41.49  Aligned_cols=44  Identities=20%  Similarity=0.240  Sum_probs=36.0

Q ss_pred             HHHHHHHHHhCCCCeecEEEE--CCe--eeecCCCCHHHHHHHHHHHh
Q 027910          173 EVHEELKKYSANISGVPHFVL--NGK--HELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       173 ~~~~~~~a~~~gv~g~Pt~vv--~g~--~~~~G~~~~~~l~~~i~~~~  216 (217)
                      +.+....|.+.+|..+||+++  ||+  ..+.|+.+.+.|.+.|++..
T Consensus       101 tD~~~ela~~Y~I~avPtvlvfknGe~~d~~vG~~~~~~l~~~i~k~l  148 (150)
T KOG0910|consen  101 TDEHPELAEDYEISAVPTVLVFKNGEKVDRFVGAVPKEQLRSLIKKFL  148 (150)
T ss_pred             cccccchHhhcceeeeeEEEEEECCEEeeeecccCCHHHHHHHHHHHh
Confidence            444566788999999999988  776  24789999999999999764

>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]

Probab=94.87  E-value=0.53  Score=37.50  Aligned_cols=48  Identities=17%  Similarity=0.216  Sum_probs=36.1

Q ss_pred             cccCCcceEEEEEecccCchhhhhHH-HHHHHHHhcCCCCceeEEEeecc
Q 027910            7 SSAGKKLIRIDVSSDTVCPWCFVGKR-NLDKAIASSKDQYDFEIRWHPFF   55 (217)
Q Consensus         7 ~~~~~~~v~i~~y~D~~CP~cy~~~~-~l~~~~~~~~~~~~v~v~~~p~~   55 (217)
                      +++...+|.|++|+.-+||+|-.+-. .|-++..... ...++++++||.
T Consensus        34 ~~~~~~~v~ItlyyEaLCPdc~~Fi~~qL~p~~~~~~-~~~idl~lvPfG   82 (220)
T KOG3160|consen   34 KGSQAPKVNITLYYEALCPDCSKFIRNQLYPFFDNLL-PSILDLTLVPFG   82 (220)
T ss_pred             ccccCCeeEEEEEEEecCccHHHHHHHHHHHHHhhcc-cceeEEEEEccC
Confidence            35666699999999999999988775 4556665431 235888999986

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=94.85  E-value=1.2  Score=33.21  Aligned_cols=38  Identities=13%  Similarity=0.089  Sum_probs=30.2

Q ss_pred             CcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910            6 SSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD   43 (217)
Q Consensus         6 ~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~   43 (217)
                      +.+.-..++.+..|+-.-||.|-...|.|.++.+++.+
T Consensus        19 ~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~   56 (146)
T cd03008          19 IVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTD   56 (146)
T ss_pred             cHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHh
Confidence            33444568888889999999999999999988776654

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>PTZ00056 glutathione peroxidase; Provisional

Probab=94.77  E-value=1.5  Score=34.26  Aligned_cols=39  Identities=13%  Similarity=0.124  Sum_probs=30.7

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR   50 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~   50 (217)
                      ..++.|..|+-.-||.|-.-.+.|.++.++|.+ .++.|.
T Consensus        38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~-~g~~vv   76 (199)
T PTZ00056         38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNP-LGLEIL   76 (199)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhc-CceEEE
Confidence            346777788889999999889999999998874 345554

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=94.72  E-value=1.2  Score=40.26  Aligned_cols=40  Identities=15%  Similarity=0.093  Sum_probs=31.1

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEE
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRW   51 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~   51 (217)
                      ..++.|..|+-.-||.|....+.|.++.+++.. .++.|..
T Consensus        55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~-~~v~VI~   94 (521)
T PRK14018         55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKF-SSANLIT   94 (521)
T ss_pred             CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhcc-CCeEEEE
Confidence            456778888889999999999999999887752 2455543

>PRK10996 thioredoxin 2; Provisional

Probab=94.71  E-value=0.079  Score=39.01  Aligned_cols=38  Identities=21%  Similarity=0.308  Sum_probs=31.4

Q ss_pred             HHHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHH
Q 027910          178 LKKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       178 ~~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~  215 (217)
                      +.+.+.||.|+||+++  +|+.  .+.|..+.+.|++.|+++
T Consensus        97 ~l~~~~~V~~~Ptlii~~~G~~v~~~~G~~~~e~l~~~l~~~  138 (139)
T PRK10996         97 ELSARFRIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNEA  138 (139)
T ss_pred             HHHHhcCCCccCEEEEEECCEEEEEEcCCCCHHHHHHHHHHh
Confidence            4577899999999988  6763  358999999999999875

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=94.71  E-value=0.083  Score=37.83  Aligned_cols=41  Identities=20%  Similarity=0.368  Sum_probs=31.3

Q ss_pred             HHHHHhCCCCeecEEEE---C-Cee--eecCCCCHHHHHHHHHHHhC
Q 027910          177 ELKKYSANISGVPHFVL---N-GKH--ELSGGQPPEVYLRAFQVAAN  217 (217)
Q Consensus       177 ~~~a~~~gv~g~Pt~vv---~-g~~--~~~G~~~~~~l~~~i~~~~~  217 (217)
                      ...+.+.||.++||+++   + |+.  .+.|+.+.+.|.+.|+.+.+
T Consensus        74 ~~l~~~~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~  120 (125)
T cd02951          74 KELARKYRVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE  120 (125)
T ss_pred             HHHHHHcCCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence            34566889999999877   3 442  45799999999999988753

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=94.71  E-value=0.067  Score=33.08  Aligned_cols=46  Identities=15%  Similarity=0.182  Sum_probs=29.2

Q ss_pred             HHHHHHHHHcCCCcccccccCc-ccchhHHHHHHHHHhCCCCeecEEEECCee
Q 027910          146 EFLVECARKVGVEGAAEFLDDP-NSGLNEVHEELKKYSANISGVPHFVLNGKH  197 (217)
Q Consensus       146 ~~L~~ia~~~Gld~~~~~l~~~-~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~  197 (217)
                      ....++.++.|++-+...+++. +.++.+.+-.      |..++|+++|||++
T Consensus        13 ~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~------g~~~~P~v~i~g~~   59 (60)
T PF00462_consen   13 KKAKEFLDEKGIPYEEVDVDEDEEAREELKELS------GVRTVPQVFIDGKF   59 (60)
T ss_dssp             HHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHH------SSSSSSEEEETTEE
T ss_pred             HHHHHHHHHcCCeeeEcccccchhHHHHHHHHc------CCCccCEEEECCEE
Confidence            3456677888887665544443 2222222222      99999999999984

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=94.39  E-value=0.13  Score=32.41  Aligned_cols=27  Identities=22%  Similarity=0.503  Sum_probs=23.4

Q ss_pred             eEEEEEecccCchhhhhHHHHHHHHHh
Q 027910           14 IRIDVSSDTVCPWCFVGKRNLDKAIAS   40 (217)
Q Consensus        14 v~i~~y~D~~CP~cy~~~~~l~~~~~~   40 (217)
                      |+|.+|+-..||+|-.+.+.+.++.+.
T Consensus         1 ~~v~~f~~~~C~~C~~~~~~l~~l~~~   27 (67)
T cd02973           1 VNIEVFVSPTCPYCPDAVQAANRIAAL   27 (67)
T ss_pred             CEEEEEECCCCCCcHHHHHHHHHHHHh
Confidence            578999999999999999988887654

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>PLN02412 probable glutathione peroxidase

Probab=94.37  E-value=1.6  Score=32.98  Aligned_cols=39  Identities=21%  Similarity=0.218  Sum_probs=30.6

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR   50 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~   50 (217)
                      ..++.|..|+..-||.|-.-.+.|.++.++|.+ .++.|.
T Consensus        28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~-~g~~vv   66 (167)
T PLN02412         28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKE-QGFEIL   66 (167)
T ss_pred             CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhh-CCcEEE
Confidence            347778888889999999988999999998874 345543

>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria

Probab=94.37  E-value=0.23  Score=35.27  Aligned_cols=38  Identities=16%  Similarity=0.221  Sum_probs=30.4

Q ss_pred             HHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHHH
Q 027910          177 ELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQV  214 (217)
Q Consensus       177 ~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~~  214 (217)
                      ...|..+||.-+|.+|||++|++=|..+...=+..+++
T Consensus        73 v~~Aw~lgi~k~PAVVfD~~~VVYG~tDV~~A~~~~~~  110 (114)
T PF07511_consen   73 VVDAWSLGITKYPAVVFDDRYVVYGETDVARALARIEQ  110 (114)
T ss_pred             HHHHHHhCccccCEEEEcCCeEEecccHHHHHHHHHHH
Confidence            34677899999999999999999999776655555554

Members belong to extended genomic regions that appear to be spread by conjugative transfer.

>PTZ00062 glutaredoxin; Provisional

Probab=94.33  E-value=2.1  Score=33.80  Aligned_cols=31  Identities=3%  Similarity=-0.270  Sum_probs=27.5

Q ss_pred             ceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910           13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKD   43 (217)
Q Consensus        13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~   43 (217)
                      ...|.+|+..-||-|-...+.+.++.++|+.
T Consensus        18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~   48 (204)
T PTZ00062         18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPS   48 (204)
T ss_pred             CcEEEEEeCCCCcchHHHHHHHHHHHHHCCC
Confidence            5678888899999999999999999998863

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=94.09  E-value=0.084  Score=35.20  Aligned_cols=38  Identities=21%  Similarity=0.442  Sum_probs=28.4

Q ss_pred             eEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeec
Q 027910           14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPF   54 (217)
Q Consensus        14 v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~   54 (217)
                      |+|.+|+-+.||||..+.+.|.++..++   .++.+++..+
T Consensus         1 m~v~iy~~~~C~~C~~a~~~L~~l~~~~---~~i~~~~idi   38 (85)
T PRK11200          1 MFVVIFGRPGCPYCVRAKELAEKLSEER---DDFDYRYVDI   38 (85)
T ss_pred             CEEEEEeCCCChhHHHHHHHHHhhcccc---cCCcEEEEEC
Confidence            5799999999999999999888776432   2455555444

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=94.07  E-value=0.081  Score=37.26  Aligned_cols=37  Identities=14%  Similarity=0.035  Sum_probs=29.1

Q ss_pred             HHHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHH
Q 027910          178 LKKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQV  214 (217)
Q Consensus       178 ~~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~  214 (217)
                      ..+.+.||.++||+++  +|+.  .+.|..+.+.|.+.|++
T Consensus        70 ~l~~~~~V~~~Pt~~i~~~g~~~~~~~G~~~~~~l~~~i~~  110 (111)
T cd02963          70 RLARKLGAHSVPAIVGIINGQVTFYHDSSFTKQHVVDFVRK  110 (111)
T ss_pred             HHHHHcCCccCCEEEEEECCEEEEEecCCCCHHHHHHHHhc
Confidence            4567889999999987  6663  24688889999888875

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=94.03  E-value=0.086  Score=37.34  Aligned_cols=40  Identities=13%  Similarity=0.071  Sum_probs=31.8

Q ss_pred             HHHHhCCCCeecEEEEC------CeeeecCCCCHHHHHHHHHHHhC
Q 027910          178 LKKYSANISGVPHFVLN------GKHELSGGQPPEVYLRAFQVAAN  217 (217)
Q Consensus       178 ~~a~~~gv~g~Pt~vv~------g~~~~~G~~~~~~l~~~i~~~~~  217 (217)
                      ..+.+.||.++||+++.      |+..+.|..+-++|...|+.+.|
T Consensus        66 ~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~~~el~~~i~~i~~  111 (113)
T cd02975          66 EKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPAGYEFASLIEDIVR  111 (113)
T ss_pred             HHHHHcCCCcCCEEEEEeCCeecceEEEEecCchHHHHHHHHHHHh
Confidence            56678999999999992      33357798888999999988754

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=93.87  E-value=0.24  Score=32.94  Aligned_cols=30  Identities=20%  Similarity=0.277  Sum_probs=20.6

Q ss_pred             HHHHHhCCCCeecEEEECCeeeecCCCCHHH
Q 027910          177 ELKKYSANISGVPHFVLNGKHELSGGQPPEV  207 (217)
Q Consensus       177 ~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~  207 (217)
                      .......++.++|+++|||+ .+.|..+...
T Consensus        48 l~~~~~~~~~~vP~ifi~g~-~igg~~~~~~   77 (85)
T PRK11200         48 LEKTVGKPVETVPQIFVDQK-HIGGCTDFEA   77 (85)
T ss_pred             HHHHHCCCCCcCCEEEECCE-EEcCHHHHHH
Confidence            44444456789999999999 5677744433

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=93.82  E-value=0.33  Score=31.17  Aligned_cols=58  Identities=16%  Similarity=0.145  Sum_probs=34.0

Q ss_pred             HHHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHH
Q 027910          146 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLR  210 (217)
Q Consensus       146 ~~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~  210 (217)
                      ...+.+.++.|++-....++.+.   ..   .+.....|..++|+++++|+..+.|. .++.|.+
T Consensus        13 ~~ak~~L~~~~i~~~~~di~~~~---~~---~~~~~~~g~~~vP~v~~~g~~~~~G~-~~~~~~~   70 (72)
T TIGR02194        13 KMTKKALEEHGIAFEEINIDEQP---EA---IDYVKAQGFRQVPVIVADGDLSWSGF-RPDKLKA   70 (72)
T ss_pred             HHHHHHHHHCCCceEEEECCCCH---HH---HHHHHHcCCcccCEEEECCCcEEecc-CHHHHHh
Confidence            34555666778876554333221   11   22233468899999999886456676 4555443

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=93.82  E-value=0.14  Score=34.72  Aligned_cols=56  Identities=18%  Similarity=0.202  Sum_probs=34.2

Q ss_pred             HHHHHHHHHcCCCcccccc-cCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHH
Q 027910          146 EFLVECARKVGVEGAAEFL-DDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVY  208 (217)
Q Consensus       146 ~~L~~ia~~~Gld~~~~~l-~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l  208 (217)
                      ..+++++.+.|++-....+ .+++    +++..  ....|-..+|.++|||+ .+.|..+...|
T Consensus        27 ~~ak~~L~~~~i~y~~idv~~~~~----~~~~l--~~~~g~~tvP~vfi~g~-~iGG~~~l~~l   83 (90)
T cd03028          27 RKVVQILNQLGVDFGTFDILEDEE----VRQGL--KEYSNWPTFPQLYVNGE-LVGGCDIVKEM   83 (90)
T ss_pred             HHHHHHHHHcCCCeEEEEcCCCHH----HHHHH--HHHhCCCCCCEEEECCE-EEeCHHHHHHH
Confidence            4566777888887665522 2222    22221  22347788999999999 47777554443

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=93.72  E-value=0.13  Score=35.51  Aligned_cols=35  Identities=14%  Similarity=0.214  Sum_probs=27.2

Q ss_pred             HHHhCCCCeecEEEE--CCe--eeecCCCCHHHHHHHHHH
Q 027910          179 KKYSANISGVPHFVL--NGK--HELSGGQPPEVYLRAFQV  214 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~g~--~~~~G~~~~~~l~~~i~~  214 (217)
                      .+.+.+|.++|||++  +|+  ..+.|. ..+.+.+.|++
T Consensus        63 ~~~~~~v~~~Pt~~~~~~g~~~~~~~G~-~~~~~~~~i~~  101 (102)
T cd02948          63 TLKRYRGKCEPTFLFYKNGELVAVIRGA-NAPLLNKTITE  101 (102)
T ss_pred             HHHHcCCCcCcEEEEEECCEEEEEEecC-ChHHHHHHHhh
Confidence            457889999999988  565  245776 77888888875

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=93.67  E-value=0.16  Score=32.61  Aligned_cols=57  Identities=14%  Similarity=0.023  Sum_probs=33.0

Q ss_pred             HHHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCC-eecEEEECCeeeecCCCCHHHH
Q 027910          146 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANIS-GVPHFVLNGKHELSGGQPPEVY  208 (217)
Q Consensus       146 ~~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~-g~Pt~vv~g~~~~~G~~~~~~l  208 (217)
                      ...++++.+.|++-....++..   ....+.  .....|.. ++|+++|+|+ .+.|..+...|
T Consensus        14 ~~ak~~L~~~~i~~~~i~i~~~---~~~~~~--~~~~~~~~~~vP~v~i~g~-~igg~~~~~~~   71 (75)
T cd03418          14 VRAKALLDKKGVDYEEIDVDGD---PALREE--MINRSGGRRTVPQIFIGDV-HIGGCDDLYAL   71 (75)
T ss_pred             HHHHHHHHHCCCcEEEEECCCC---HHHHHH--HHHHhCCCCccCEEEECCE-EEeChHHHHHH
Confidence            4456667778887665433321   111111  11234555 8999999998 57777655444

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=93.61  E-value=0.16  Score=33.16  Aligned_cols=58  Identities=12%  Similarity=-0.006  Sum_probs=35.2

Q ss_pred             HHHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHH
Q 027910          146 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYL  209 (217)
Q Consensus       146 ~~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~  209 (217)
                      ...+.+.++.|++-....++...   ...+..  ....|..++|+++|+|+ .+.|..+...+.
T Consensus        13 ~~a~~~L~~~~i~~~~~di~~~~---~~~~~~--~~~~g~~~vP~i~i~g~-~igg~~~~~~~~   70 (79)
T TIGR02181        13 TRAKALLSSKGVTFTEIRVDGDP---ALRDEM--MQRSGRRTVPQIFIGDV-HVGGCDDLYALD   70 (79)
T ss_pred             HHHHHHHHHcCCCcEEEEecCCH---HHHHHH--HHHhCCCCcCEEEECCE-EEcChHHHHHHH
Confidence            44566677788876555333221   122222  22357899999999998 577876555543

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=93.52  E-value=0.22  Score=33.79  Aligned_cols=36  Identities=19%  Similarity=0.348  Sum_probs=29.2

Q ss_pred             HHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHH
Q 027910          179 KKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQV  214 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~  214 (217)
                      .+.+.+|.++||+++  +|+.  .+.|..+.+.|.+.|++
T Consensus        63 l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~  102 (103)
T PF00085_consen   63 LCKKYGVKSVPTIIFFKNGKEVKRYNGPRNAESLIEFIEK  102 (103)
T ss_dssp             HHHHTTCSSSSEEEEEETTEEEEEEESSSSHHHHHHHHHH
T ss_pred             hhhccCCCCCCEEEEEECCcEEEEEECCCCHHHHHHHHHc
Confidence            466789999999988  5653  46899999999998875

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=93.51  E-value=2.3  Score=32.90  Aligned_cols=29  Identities=10%  Similarity=0.035  Sum_probs=23.7

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHH
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIA   39 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~   39 (217)
                      ..+..|.+|+-.-||.|-...+.+.++.+
T Consensus        73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~  101 (189)
T TIGR02661        73 PGRPTLLMFTAPSCPVCDKLFPIIKSIAR  101 (189)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHH
Confidence            45677888889999999998888887655

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=93.51  E-value=0.19  Score=37.11  Aligned_cols=37  Identities=27%  Similarity=0.504  Sum_probs=29.1

Q ss_pred             HHhCCCCeecEEEE---CCe--eeecCCCCHHHHHHHHHHHh
Q 027910          180 KYSANISGVPHFVL---NGK--HELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       180 a~~~gv~g~Pt~vv---~g~--~~~~G~~~~~~l~~~i~~~~  216 (217)
                      +.+.||.|+||++|   +|+  ..+.|..+.+.|.+.|+++.
T Consensus        69 ~~~~~V~~iPt~v~~~~~G~~v~~~~G~~~~~~l~~~l~~l~  110 (142)
T cd02950          69 IDRYRVDGIPHFVFLDREGNEEGQSIGLQPKQVLAQNLDALV  110 (142)
T ss_pred             HHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHH
Confidence            45689999999977   355  23579999999999998764

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=93.48  E-value=0.37  Score=31.89  Aligned_cols=59  Identities=15%  Similarity=0.158  Sum_probs=35.4

Q ss_pred             HHHHHHHcCCCcccccccCcccchhHHHHHHHHHhC-CCCeecEEEECCeeeecCCCCHHHHHHH
Q 027910          148 LVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSA-NISGVPHFVLNGKHELSGGQPPEVYLRA  211 (217)
Q Consensus       148 L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~-gv~g~Pt~vv~g~~~~~G~~~~~~l~~~  211 (217)
                      .++++.+.|++-....+.+.+.    .+......+. |...||.++|||+ .+.|..+.+.+...
T Consensus        17 ak~~L~~~g~~~~~i~~~~~~~----~~~~~~~~~~~g~~tvP~I~i~~~-~igg~~d~~~~~~~   76 (80)
T COG0695          17 AKRLLDRKGVDYEEIDVDDDEP----EEAREMVKRGKGQRTVPQIFIGGK-HVGGCDDLDALEAK   76 (80)
T ss_pred             HHHHHHHcCCCcEEEEecCCcH----HHHHHHHHHhCCCCCcCEEEECCE-EEeCcccHHHHHhh
Confidence            3455667788766553333221    1111222333 8999999999998 56777677766543

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=93.43  E-value=0.3  Score=33.77  Aligned_cols=59  Identities=17%  Similarity=0.167  Sum_probs=35.2

Q ss_pred             HHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHH
Q 027910          147 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVY  208 (217)
Q Consensus       147 ~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l  208 (217)
                      ..+.+..+.|++.....++..+-...+++..  ....|...+|.++|+|+ .+.|..+...+
T Consensus        23 ~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l--~~~tg~~tvP~Vfi~g~-~iGG~ddl~~l   81 (99)
T TIGR02189        23 VVKRLLLTLGVNPAVHEIDKEPAGKDIENAL--SRLGCSPAVPAVFVGGK-LVGGLENVMAL   81 (99)
T ss_pred             HHHHHHHHcCCCCEEEEcCCCccHHHHHHHH--HHhcCCCCcCeEEECCE-EEcCHHHHHHH
Confidence            3455677778876655444322122222222  23348889999999998 67888655444

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>PHA03050 glutaredoxin; Provisional

Probab=93.42  E-value=0.31  Score=34.34  Aligned_cols=60  Identities=8%  Similarity=-0.061  Sum_probs=34.4

Q ss_pred             HHHHHHHHHcCCCcccc---cccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHH
Q 027910          146 EFLVECARKVGVEGAAE---FLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVY  208 (217)
Q Consensus       146 ~~L~~ia~~~Gld~~~~---~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l  208 (217)
                      ....++..+.|+....+   .++...-...+++...  ...|-..||+++|||+ .+.|..+...|
T Consensus        27 ~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~--~~tG~~tVP~IfI~g~-~iGG~ddl~~l   89 (108)
T PHA03050         27 RNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFE--QITGGRTVPRIFFGKT-SIGGYSDLLEI   89 (108)
T ss_pred             HHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHH--HHcCCCCcCEEEECCE-EEeChHHHHHH
Confidence            34566777777743333   3333222222333332  2347789999999999 57787554443

>PRK10329 glutaredoxin-like protein; Provisional

Probab=93.34  E-value=0.63  Score=30.83  Aligned_cols=60  Identities=12%  Similarity=0.065  Sum_probs=37.2

Q ss_pred             HHHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHH
Q 027910          146 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQ  213 (217)
Q Consensus       146 ~~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~  213 (217)
                      ...+...++.|++-+...++.+.      +..++....|..++|+++++|. .+.|. .++.|.+++-
T Consensus        15 ~~ak~~L~~~gI~~~~idi~~~~------~~~~~~~~~g~~~vPvv~i~~~-~~~Gf-~~~~l~~~~~   74 (81)
T PRK10329         15 HATKRAMESRGFDFEMINVDRVP------EAAETLRAQGFRQLPVVIAGDL-SWSGF-RPDMINRLHP   74 (81)
T ss_pred             HHHHHHHHHCCCceEEEECCCCH------HHHHHHHHcCCCCcCEEEECCE-EEecC-CHHHHHHHHH
Confidence            34566667888876655333221      1122233458899999999987 57777 5666666553

>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family

Probab=93.30  E-value=0.26  Score=34.88  Aligned_cols=35  Identities=14%  Similarity=0.259  Sum_probs=28.2

Q ss_pred             HHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHH
Q 027910          179 KKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQ  213 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~  213 (217)
                      .|..+||.-+|.+|||++|++=|..+...=...++
T Consensus        76 ~Aw~lGi~k~PAVV~D~~~VVYG~~DV~~A~~~~~  110 (113)
T TIGR03757        76 DAWQLGVTKIPAVVVDRRYVVYGETDVARALALIQ  110 (113)
T ss_pred             HHHHcCCccCCEEEEcCCeEEecCccHHHHHHHHH
Confidence            56789999999999999999999876655444443

Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=93.09  E-value=0.61  Score=32.20  Aligned_cols=35  Identities=26%  Similarity=0.392  Sum_probs=24.3

Q ss_pred             HHHHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHH
Q 027910          177 ELKKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAF  212 (217)
Q Consensus       177 ~~~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i  212 (217)
                      ...+.+.+|.|+|||++  +|+.  .+.|..+ +.|.+.+
T Consensus        61 ~~l~~~~~V~~~Pt~~~~~~G~~v~~~~G~~~-~~l~~~~   99 (103)
T cd02985          61 MELCRREKIIEVPHFLFYKDGEKIHEEEGIGP-DELIGDV   99 (103)
T ss_pred             HHHHHHcCCCcCCEEEEEeCCeEEEEEeCCCH-HHHHHHH
Confidence            35677889999999988  6762  3578754 5555544

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=93.09  E-value=0.17  Score=34.45  Aligned_cols=34  Identities=24%  Similarity=0.292  Sum_probs=26.2

Q ss_pred             HHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHH
Q 027910          179 KKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAF  212 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i  212 (217)
                      .+.+.|+.++||+++  +|+.  .+.|..+.++|.+.|
T Consensus        59 l~~~~~v~~vPt~~i~~~g~~v~~~~g~~~~~~~~~~l   96 (97)
T cd02949          59 IAEAAGIMGTPTVQFFKDKELVKEISGVKMKSEYREFI   96 (97)
T ss_pred             HHHHCCCeeccEEEEEECCeEEEEEeCCccHHHHHHhh
Confidence            355778999999988  5653  368999998887765

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=93.01  E-value=0.23  Score=34.19  Aligned_cols=56  Identities=18%  Similarity=0.107  Sum_probs=35.3

Q ss_pred             HHHHHHHHHcCCCccccccc-CcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHH
Q 027910          146 EFLVECARKVGVEGAAEFLD-DPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVY  208 (217)
Q Consensus       146 ~~L~~ia~~~Gld~~~~~l~-~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l  208 (217)
                      ..+.++..+.|++-..+.+. ++    .+++...  ...|-..+|.++|||+ .+.|..+...+
T Consensus        31 ~~ak~lL~~~~i~~~~~di~~~~----~~~~~l~--~~tg~~tvP~vfi~g~-~iGG~ddl~~l   87 (97)
T TIGR00365        31 ARAVQILKACGVPFAYVNVLEDP----EIRQGIK--EYSNWPTIPQLYVKGE-FVGGCDIIMEM   87 (97)
T ss_pred             HHHHHHHHHcCCCEEEEECCCCH----HHHHHHH--HHhCCCCCCEEEECCE-EEeChHHHHHH
Confidence            45677778888876655332 32    2222222  2346789999999999 57787555443

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>TIGR02180 GRX_euk Glutaredoxin

Probab=92.98  E-value=0.44  Score=31.13  Aligned_cols=56  Identities=21%  Similarity=0.192  Sum_probs=32.1

Q ss_pred             HHHHHHHHHcCCCc--ccccccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCC
Q 027910          146 EFLVECARKVGVEG--AAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQP  204 (217)
Q Consensus       146 ~~L~~ia~~~Gld~--~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~  204 (217)
                      ..+..+..+.|++.  ..+.++..+....+.+.  .....|+.++|++++||+ .+.|...
T Consensus        13 ~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~--l~~~~g~~~vP~v~i~g~-~igg~~~   70 (84)
T TIGR02180        13 KKAKEILAKLNVKPAYEVVELDQLSNGSEIQDY--LEEITGQRTVPNIFINGK-FIGGCSD   70 (84)
T ss_pred             HHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHH--HHHHhCCCCCCeEEECCE-EEcCHHH
Confidence            34556677777762  22244433222222222  233568899999999998 5677643

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=92.82  E-value=0.2  Score=33.79  Aligned_cols=35  Identities=20%  Similarity=0.369  Sum_probs=26.9

Q ss_pred             HHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHH
Q 027910          179 KKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQ  213 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~  213 (217)
                      .+.+.||.++||+++  +|+.  .+.|..+.+.+...|+
T Consensus        58 l~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~   96 (96)
T cd02956          58 IAQQFGVQALPTVYLFAAGQPVDGFQGAQPEEQLRQMLD   96 (96)
T ss_pred             HHHHcCCCCCCEEEEEeCCEEeeeecCCCCHHHHHHHhC
Confidence            466789999999987  5653  3578888888887763

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=92.73  E-value=4.5  Score=32.67  Aligned_cols=39  Identities=21%  Similarity=0.190  Sum_probs=31.1

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR   50 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~   50 (217)
                      ..++.|..|+-.-||.|-.-.+.|.++.++|.+ .++.|.
T Consensus        98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~-~Gv~VI  136 (236)
T PLN02399         98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKT-QGFEIL  136 (236)
T ss_pred             CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhc-CCcEEE
Confidence            346778888889999999999999999998874 355554

>PHA02278 thioredoxin-like protein

Probab=92.73  E-value=0.24  Score=34.54  Aligned_cols=33  Identities=12%  Similarity=0.124  Sum_probs=25.5

Q ss_pred             HHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHH
Q 027910          179 KKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRA  211 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~  211 (217)
                      .+.+.+|.|+|||++  ||+.  .+.|..+.+.+.+.
T Consensus        64 l~~~~~I~~iPT~i~fk~G~~v~~~~G~~~~~~l~~~  100 (103)
T PHA02278         64 AVKLFDIMSTPVLIGYKDGQLVKKYEDQVTPMQLQEL  100 (103)
T ss_pred             HHHHCCCccccEEEEEECCEEEEEEeCCCCHHHHHhh
Confidence            567889999999988  6763  36798888777653

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=92.67  E-value=0.41  Score=30.04  Aligned_cols=58  Identities=19%  Similarity=0.171  Sum_probs=32.2

Q ss_pred             HHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHH
Q 027910          147 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRA  211 (217)
Q Consensus       147 ~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~  211 (217)
                      .+..+..+.|++-....++..   ....++...  ..++.++|+++++|+ .+.|.. .+.+.++
T Consensus        15 ~~~~~l~~~~i~~~~~~i~~~---~~~~~~~~~--~~~~~~vP~i~~~~~-~i~g~~-~~~l~~~   72 (73)
T cd02976          15 ATKRFLDERGIPFEEVDVDED---PEALEELKK--LNGYRSVPVVVIGDE-HLSGFR-PDKLRAL   72 (73)
T ss_pred             HHHHHHHHCCCCeEEEeCCCC---HHHHHHHHH--HcCCcccCEEEECCE-EEecCC-HHHHHhh
Confidence            345555666776554333221   112222221  237899999999987 678864 4455443

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=92.57  E-value=2.6  Score=41.53  Aligned_cols=39  Identities=21%  Similarity=0.116  Sum_probs=30.6

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR   50 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~   50 (217)
                      ..++.|..|+-.-||.|....|.|.++.++|++ .++.|.
T Consensus       419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~-~~~~vv  457 (1057)
T PLN02919        419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKD-QPFTVV  457 (1057)
T ss_pred             CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCC-CCeEEE
Confidence            356777777778999999999999999998874 345543

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=92.50  E-value=0.24  Score=33.74  Aligned_cols=32  Identities=19%  Similarity=0.211  Sum_probs=28.3

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~   42 (217)
                      ..++.+.+|+...||+|....+.+.++.+++.
T Consensus        12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~   43 (97)
T cd02949          12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFD   43 (97)
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHHHhC
Confidence            45788899999999999999999999888765

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=92.49  E-value=0.19  Score=32.30  Aligned_cols=55  Identities=18%  Similarity=0.071  Sum_probs=32.7

Q ss_pred             HHHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHH
Q 027910          146 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPE  206 (217)
Q Consensus       146 ~~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~  206 (217)
                      .....++++.|++-....+....   ....+.  ....|-.++|+++|||+ .|.|.....
T Consensus        15 ~ka~~~L~~~gi~~~~~di~~~~---~~~~el--~~~~g~~~vP~v~i~~~-~iGg~~~~~   69 (73)
T cd03027          15 TAVRLFLREKGLPYVEINIDIFP---ERKAEL--EERTGSSVVPQIFFNEK-LVGGLTDLK   69 (73)
T ss_pred             HHHHHHHHHCCCceEEEECCCCH---HHHHHH--HHHhCCCCcCEEEECCE-EEeCHHHHH
Confidence            45667777888876655333211   122222  22346688999999998 577764433

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=92.29  E-value=0.32  Score=33.56  Aligned_cols=38  Identities=13%  Similarity=0.126  Sum_probs=29.1

Q ss_pred             HHHhCCCCeecEEEE-C-Ce-eeecCCCCHHHHHHHHHHHh
Q 027910          179 KKYSANISGVPHFVL-N-GK-HELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv-~-g~-~~~~G~~~~~~l~~~i~~~~  216 (217)
                      .+.+.+|.++||+++ + |. +.+.|..+.+.|...+++.+
T Consensus        64 ~~~~~~I~~~Pt~~l~~~~~~~~~~G~~~~~~l~~~~~~~~  104 (104)
T cd03000          64 IASEFGVRGYPTIKLLKGDLAYNYRGPRTKDDIVEFANRVA  104 (104)
T ss_pred             HHhhcCCccccEEEEEcCCCceeecCCCCHHHHHHHHHhhC
Confidence            356789999999977 3 32 34678889999999888753

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=92.21  E-value=0.17  Score=35.83  Aligned_cols=57  Identities=14%  Similarity=0.188  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHcCCCcccc-cccCcccchhHHHHHHHHHhCCCCeecEEEE--CCee--eecCCCCHHHHH
Q 027910          145 KEFLVECARKVGVEGAAE-FLDDPNSGLNEVHEELKKYSANISGVPHFVL--NGKH--ELSGGQPPEVYL  209 (217)
Q Consensus       145 ~~~L~~ia~~~Gld~~~~-~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~  209 (217)
                      ...|.+++++.+ +.-.+ .++.++       +.+.+.+.||.|+|||++  +|+.  .+.|..+-++|.
T Consensus        48 ~P~leela~e~~-~~v~f~kVdid~-------~~~la~~f~V~sIPTli~fkdGk~v~~~~G~~~~~e~~  109 (111)
T cd02965          48 AVVLPELLKAFP-GRFRAAVVGRAD-------EQALAARFGVLRTPALLFFRDGRYVGVLAGIRDWDEYV  109 (111)
T ss_pred             HhHHHHHHHHCC-CcEEEEEEECCC-------CHHHHHHcCCCcCCEEEEEECCEEEEEEeCccCHHHHh
Confidence            356777777753 11122 333322       236788999999999988  7763  357888887765

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=92.19  E-value=0.31  Score=33.01  Aligned_cols=39  Identities=21%  Similarity=0.308  Sum_probs=29.5

Q ss_pred             HHHHHhCCCCeecEEEE--CCe--eeecCCCCHHHHHHHHHHH
Q 027910          177 ELKKYSANISGVPHFVL--NGK--HELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       177 ~~~a~~~gv~g~Pt~vv--~g~--~~~~G~~~~~~l~~~i~~~  215 (217)
                      ...+.+.|+.++|++++  +|+  +.+.|..+.+.|...|++.
T Consensus        59 ~~~~~~~~i~~~P~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~  101 (102)
T TIGR01126        59 KDLASRFGVSGFPTIKFFPKGKKPVDYEGGRDLEAIVEFVNEK  101 (102)
T ss_pred             HHHHHhCCCCcCCEEEEecCCCcceeecCCCCHHHHHHHHHhc
Confidence            34457889999999976  233  3568998999998888763

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins

Probab=92.12  E-value=0.51  Score=34.04  Aligned_cols=63  Identities=14%  Similarity=0.180  Sum_probs=35.8

Q ss_pred             HHHHcCCCcccc-cccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCC-HHHHHHHHH
Q 027910          151 CARKVGVEGAAE-FLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQP-PEVYLRAFQ  213 (217)
Q Consensus       151 ia~~~Gld~~~~-~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~-~~~l~~~i~  213 (217)
                      .+++-|++..++ ...+|..=..-..-.+.-...|..+.|.++|||+....|..| .++|.+.+.
T Consensus        35 ~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlVdGeiv~~G~YPt~eEl~~~~~   99 (123)
T PF06953_consen   35 WLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLVDGEIVKTGRYPTNEELAEWLG   99 (123)
T ss_dssp             HHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEETTEEEEESS---HHHHHHHHT
T ss_pred             HHHhCCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEECCEEEEecCCCCHHHHHHHhC
Confidence            345568888888 444443211111122334567999999999999976777665 688877653

ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.

>PRK09381 trxA thioredoxin; Provisional

Probab=92.05  E-value=0.42  Score=33.14  Aligned_cols=36  Identities=19%  Similarity=0.293  Sum_probs=28.7

Q ss_pred             HHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHH
Q 027910          180 KYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       180 a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~  215 (217)
                      +.+.++.++||+++  +|+.  .+.|..+.+.+...|++.
T Consensus        68 ~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~i~~~  107 (109)
T PRK09381         68 APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDAN  107 (109)
T ss_pred             HHhCCCCcCCEEEEEeCCeEEEEecCCCCHHHHHHHHHHh
Confidence            45789999999988  6763  357888999999988864

>TIGR01068 thioredoxin thioredoxin

Probab=92.02  E-value=0.38  Score=32.39  Aligned_cols=36  Identities=22%  Similarity=0.371  Sum_probs=28.3

Q ss_pred             HHhCCCCeecEEEE--CCe--eeecCCCCHHHHHHHHHHH
Q 027910          180 KYSANISGVPHFVL--NGK--HELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       180 a~~~gv~g~Pt~vv--~g~--~~~~G~~~~~~l~~~i~~~  215 (217)
                      +.+.|+.++||+++  +|+  ..+.|..+.+.+...|++.
T Consensus        61 ~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~l~~~  100 (101)
T TIGR01068        61 AAKYGIRSIPTLLLFKNGKEVDRSVGALPKAALKQLINKN  100 (101)
T ss_pred             HHHcCCCcCCEEEEEeCCcEeeeecCCCCHHHHHHHHHhh
Confidence            45789999999988  565  2457888889999988764

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=91.90  E-value=0.39  Score=34.34  Aligned_cols=45  Identities=13%  Similarity=0.023  Sum_probs=34.7

Q ss_pred             cCcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910            5 VSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR   50 (217)
Q Consensus         5 ~~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~   50 (217)
                      ++...-..++.|.+|+..-||.|-...+.|.++.++|.+ .++.+.
T Consensus        16 v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~-~~~~vi   60 (126)
T cd03012          16 LSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKD-DGLVVI   60 (126)
T ss_pred             cCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCc-CCeEEE
Confidence            444444567888888899999999999999999998874 345554

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=91.89  E-value=0.49  Score=30.23  Aligned_cols=50  Identities=14%  Similarity=0.213  Sum_probs=29.1

Q ss_pred             HHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCC
Q 027910          148 LVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQP  204 (217)
Q Consensus       148 L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~  204 (217)
                      .+++..+.|++-....++.....      .......|...+|.++|||+ .+.|...
T Consensus        17 ak~~L~~~~i~~~~~~v~~~~~~------~~~~~~~g~~~vP~ifi~g~-~igg~~~   66 (72)
T cd03029          17 AKAALQENGISYEEIPLGKDITG------RSLRAVTGAMTVPQVFIDGE-LIGGSDD   66 (72)
T ss_pred             HHHHHHHcCCCcEEEECCCChhH------HHHHHHhCCCCcCeEEECCE-EEeCHHH
Confidence            45555667777554433332211      11123358899999999999 4666533

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=91.61  E-value=0.47  Score=33.39  Aligned_cols=40  Identities=23%  Similarity=0.272  Sum_probs=31.8

Q ss_pred             HHHHHhCCCCeecEEEE----CCe--eeecCCCCHHHHHHHHHHHh
Q 027910          177 ELKKYSANISGVPHFVL----NGK--HELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       177 ~~~a~~~gv~g~Pt~vv----~g~--~~~~G~~~~~~l~~~i~~~~  216 (217)
                      .+.+...++.++|++++    +|+  ..+.|..++++|...|+++.
T Consensus        66 ~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~  111 (114)
T cd02958          66 QRFLQSYKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFL  111 (114)
T ss_pred             HHHHHHhCccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHH
Confidence            44577788999999977    344  34689999999999998764

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=91.58  E-value=0.31  Score=31.33  Aligned_cols=33  Identities=15%  Similarity=0.067  Sum_probs=24.4

Q ss_pred             EEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecc
Q 027910           15 RIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF   55 (217)
Q Consensus        15 ~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~   55 (217)
                      +|++|+-+.||+|..+...|.+        .++.++++.+.
T Consensus         2 ~v~ly~~~~C~~C~ka~~~L~~--------~gi~~~~~di~   34 (73)
T cd03027           2 RVTIYSRLGCEDCTAVRLFLRE--------KGLPYVEINID   34 (73)
T ss_pred             EEEEEecCCChhHHHHHHHHHH--------CCCceEEEECC
Confidence            5789999999999997776653        35666666443

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=91.41  E-value=0.4  Score=31.46  Aligned_cols=53  Identities=17%  Similarity=0.213  Sum_probs=31.9

Q ss_pred             HHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHH
Q 027910          147 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPE  206 (217)
Q Consensus       147 ~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~  206 (217)
                      ..++++++.|++-+...++..+-.    .  ......|...+|.+++||+ .+.|.....
T Consensus        23 ~ak~~L~~~gi~y~~idi~~~~~~----~--~~~~~~g~~~vP~i~i~g~-~igG~~~l~   75 (79)
T TIGR02190        23 KAKATLKEKGYDFEEIPLGNDARG----R--SLRAVTGATTVPQVFIGGK-LIGGSDELE   75 (79)
T ss_pred             HHHHHHHHcCCCcEEEECCCChHH----H--HHHHHHCCCCcCeEEECCE-EEcCHHHHH
Confidence            445556677887665533332111    1  1223458899999999998 577874433

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=91.39  E-value=0.33  Score=33.37  Aligned_cols=35  Identities=17%  Similarity=0.300  Sum_probs=26.4

Q ss_pred             HHHhCCCCeecEEEE-C---Ce--eeecCCCCHHHHHHHHH
Q 027910          179 KKYSANISGVPHFVL-N---GK--HELSGGQPPEVYLRAFQ  213 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv-~---g~--~~~~G~~~~~~l~~~i~  213 (217)
                      .+.+.|+.++||++| +   |+  ..+.|..+.+.|.+.|+
T Consensus        64 ~~~~~~i~~~Pti~~~~~~~g~~~~~~~G~~~~~~l~~~l~  104 (104)
T cd02953          64 LLKRFGVFGPPTYLFYGPGGEPEPLRLPGFLTADEFLEALE  104 (104)
T ss_pred             HHHHcCCCCCCEEEEECCCCCCCCcccccccCHHHHHHHhC
Confidence            445679999999977 3   33  34579999999988763

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=91.05  E-value=0.45  Score=29.25  Aligned_cols=32  Identities=22%  Similarity=0.292  Sum_probs=24.5

Q ss_pred             EEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecc
Q 027910           16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF   55 (217)
Q Consensus        16 i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~   55 (217)
                      |.+|+-..||+|..+...|++        .++.++++.+.
T Consensus         1 V~vy~~~~C~~C~~~~~~L~~--------~~i~y~~~dv~   32 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFLDE--------KGIPYEEVDVD   32 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHHHH--------TTBEEEEEEGG
T ss_pred             cEEEEcCCCcCHHHHHHHHHH--------cCCeeeEcccc
Confidence            678999999999998776642        35777777665

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]

Probab=91.05  E-value=0.44  Score=34.97  Aligned_cols=42  Identities=26%  Similarity=0.211  Sum_probs=30.5

Q ss_pred             ccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecc
Q 027910            8 SAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF   55 (217)
Q Consensus         8 ~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~   55 (217)
                      .+.|++..++++||-.||.|......|.+.      +..-.+.|.++.
T Consensus         2 ~~~~~~p~~vvlyDG~C~lC~~~vrfLi~~------D~~~~i~f~~~q   43 (137)
T COG3011           2 LPQMKKPDLVVLYDGVCPLCDGWVRFLIRR------DQGGRIRFAALQ   43 (137)
T ss_pred             CCCCCCCCEEEEECCcchhHHHHHHHHHHh------ccCCcEEEEecc
Confidence            356788899999999999999966655432      234456666664

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=90.89  E-value=0.55  Score=30.54  Aligned_cols=27  Identities=26%  Similarity=0.426  Sum_probs=22.7

Q ss_pred             eEEEEEecccCchhhhhHHHHHHHHHhc
Q 027910           14 IRIDVSSDTVCPWCFVGKRNLDKAIASS   41 (217)
Q Consensus        14 v~i~~y~D~~CP~cy~~~~~l~~~~~~~   41 (217)
                      |+|.+ +...||+|..+...++++++++
T Consensus         1 m~I~v-~~~~C~~C~~~~~~~~~~~~~~   27 (76)
T PF13192_consen    1 MKIKV-FSPGCPYCPELVQLLKEAAEEL   27 (76)
T ss_dssp             EEEEE-ECSSCTTHHHHHHHHHHHHHHT
T ss_pred             CEEEE-eCCCCCCcHHHHHHHHHHHHhc
Confidence            56777 6788999999999999988864

...

>PF13728 TraF: F plasmid transfer operon protein

Probab=90.88  E-value=5.5  Score=31.63  Aligned_cols=105  Identities=15%  Similarity=0.069  Sum_probs=64.8

Q ss_pred             CCcHHHHHHHHHHhhcCCchHHHHHHHHHHHH----hhcCCCCCC---HHHHHHHHHHcCCCccccccc---CcccchhH
Q 027910          104 GNTLDSHRLLYLAGQQGLDKQHNLAEELFLGY----FTQGKYIGD---KEFLVECARKVGVEGAAEFLD---DPNSGLNE  173 (217)
Q Consensus       104 ~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~----~~~g~~i~~---~~~L~~ia~~~Gld~~~~~l~---~~~~~~~~  173 (217)
                      |.+..+......++.+.   ...++..+...+    |.++.+.-.   ..+|..++.+.|+..-.+.++   .+.....+
T Consensus        94 P~~~~a~~~~~~~~~~~---~~~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~  170 (215)
T PF13728_consen   94 PVSNFARQAYLRQREQK---RDKALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPR  170 (215)
T ss_pred             CchHHHHHHHHHHHHHH---HHHHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCC
Confidence            44444444444433322   566677777663    455555433   477888999999976544333   22222222


Q ss_pred             HHHHHHHHhCCCCeecEEEE---CC-ee-ee-cCCCCHHHHHHHH
Q 027910          174 VHEELKKYSANISGVPHFVL---NG-KH-EL-SGGQPPEVYLRAF  212 (217)
Q Consensus       174 ~~~~~~a~~~gv~g~Pt~vv---~g-~~-~~-~G~~~~~~l~~~i  212 (217)
                      . +...+..+||.-||++++   ++ ++ .| .|..+.++|.+.|
T Consensus       171 ~-~~g~~~~l~v~~~Pal~Lv~~~~~~~~pv~~G~~s~~~L~~ri  214 (215)
T PF13728_consen  171 P-DPGQAKRLGVKVTPALFLVNPNTKKWYPVSQGFMSLDELEDRI  214 (215)
T ss_pred             C-CHHHHHHcCCCcCCEEEEEECCCCeEEEEeeecCCHHHHHHhh
Confidence            2 667788999999999987   23 43 33 6999999988765

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=90.86  E-value=0.34  Score=39.33  Aligned_cols=41  Identities=5%  Similarity=-0.115  Sum_probs=32.8

Q ss_pred             ceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCC
Q 027910           13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPS   59 (217)
Q Consensus        13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~   59 (217)
                      .--|.+||.-.||+|....+.|+.+.++|    ++.|  .|+++++.
T Consensus       144 ~~GL~fFy~s~Cp~C~~~aPil~~fa~~y----g~~v--~~VS~DG~  184 (248)
T PRK13703        144 HYGLMFFYRGQDPIDGQLAQVINDFRDTY----GLSV--IPVSVDGV  184 (248)
T ss_pred             cceEEEEECCCCchhHHHHHHHHHHHHHh----CCeE--EEEecCCC
Confidence            36789999999999999999999988754    4655  47777653

>PF13728 TraF: F plasmid transfer operon protein

Probab=90.82  E-value=0.39  Score=38.16  Aligned_cols=42  Identities=17%  Similarity=0.269  Sum_probs=33.1

Q ss_pred             cceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCC
Q 027910           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPS   59 (217)
Q Consensus        12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~   59 (217)
                      ...-|.+|++..||+|....+.|+.+.++|    ++.|.  ++++++.
T Consensus       120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~y----g~~v~--~vs~DG~  161 (215)
T PF13728_consen  120 QKYGLFFFYRSDCPYCQQQAPILQQFADKY----GFSVI--PVSLDGR  161 (215)
T ss_pred             hCeEEEEEEcCCCchhHHHHHHHHHHHHHh----CCEEE--EEecCCC
Confidence            456799999999999999999999888754    56664  5666543

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=90.75  E-value=0.35  Score=33.01  Aligned_cols=35  Identities=11%  Similarity=0.171  Sum_probs=27.3

Q ss_pred             HHHhCCCCeecEEEE--CCe-eeecCCCCHHHHHHHHH
Q 027910          179 KKYSANISGVPHFVL--NGK-HELSGGQPPEVYLRAFQ  213 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~g~-~~~~G~~~~~~l~~~i~  213 (217)
                      .+.+.+|.++||+++  +|+ ..+.|..+.+.|...|+
T Consensus        63 ~~~~~~i~~~Pt~~~~~~g~~~~~~G~~~~~~l~~~i~  100 (101)
T cd02994          63 LSGRFFVTALPTIYHAKDGVFRRYQGPRDKEDLISFIE  100 (101)
T ss_pred             HHHHcCCcccCEEEEeCCCCEEEecCCCCHHHHHHHHh
Confidence            456889999999988  565 24578888888888775

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>PRK10638 glutaredoxin 3; Provisional

Probab=90.73  E-value=0.61  Score=30.81  Aligned_cols=56  Identities=13%  Similarity=0.095  Sum_probs=33.4

Q ss_pred             HHHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHH
Q 027910          146 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEV  207 (217)
Q Consensus       146 ~~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~  207 (217)
                      ..+.+++++.|++-+...++...   ...++  .....|...+|+++++|+ .+.|..+...
T Consensus        16 ~~a~~~L~~~gi~y~~~dv~~~~---~~~~~--l~~~~g~~~vP~i~~~g~-~igG~~~~~~   71 (83)
T PRK10638         16 HRAKALLNSKGVSFQEIPIDGDA---AKREE--MIKRSGRTTVPQIFIDAQ-HIGGCDDLYA   71 (83)
T ss_pred             HHHHHHHHHcCCCcEEEECCCCH---HHHHH--HHHHhCCCCcCEEEECCE-EEeCHHHHHH
Confidence            44566777788876554333211   12222  223457888999999998 5777754433

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=90.18  E-value=0.72  Score=32.05  Aligned_cols=44  Identities=11%  Similarity=0.051  Sum_probs=31.3

Q ss_pred             cCcccCC-cceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910            5 VSSSAGK-KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR   50 (217)
Q Consensus         5 ~~~~~~~-~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~   50 (217)
                      ++.+.-. .+..|.+|+..-||.|....+.+.++.+++..  ++.+.
T Consensus        13 ~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~--~~~vi   57 (114)
T cd02967          13 VRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD--WLDVV   57 (114)
T ss_pred             EEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC--CcEEE
Confidence            3444433 56777778899999999999999988776643  34443

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=90.11  E-value=1.3  Score=29.62  Aligned_cols=24  Identities=21%  Similarity=0.360  Sum_probs=17.3

Q ss_pred             CCCeecEEEECCeeeecCCCCHHHH
Q 027910          184 NISGVPHFVLNGKHELSGGQPPEVY  208 (217)
Q Consensus       184 gv~g~Pt~vv~g~~~~~G~~~~~~l  208 (217)
                      +..++|+++|||+ .+.|..+...+
T Consensus        54 ~~~tVP~ifi~g~-~igG~~dl~~~   77 (86)
T TIGR02183        54 PVETVPQIFVDEK-HVGGCTDFEQL   77 (86)
T ss_pred             CCCCcCeEEECCE-EecCHHHHHHH
Confidence            4589999999998 46777444333

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=90.07  E-value=0.45  Score=30.43  Aligned_cols=32  Identities=19%  Similarity=0.446  Sum_probs=23.3

Q ss_pred             EEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeec
Q 027910           15 RIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPF   54 (217)
Q Consensus        15 ~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~   54 (217)
                      +|.+|+-..||||..+...|.+        .++.++.+.+
T Consensus         2 ~v~lys~~~Cp~C~~ak~~L~~--------~~i~~~~~~v   33 (72)
T cd03029           2 SVSLFTKPGCPFCARAKAALQE--------NGISYEEIPL   33 (72)
T ss_pred             eEEEEECCCCHHHHHHHHHHHH--------cCCCcEEEEC
Confidence            5889999999999998766642        3455555544

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]

Probab=90.06  E-value=0.74  Score=32.33  Aligned_cols=40  Identities=20%  Similarity=0.307  Sum_probs=29.4

Q ss_pred             eEEEEEecccCchhhhhH-HHHHHHH--HhcCCCCceeEEEeecc
Q 027910           14 IRIDVSSDTVCPWCFVGK-RNLDKAI--ASSKDQYDFEIRWHPFF   55 (217)
Q Consensus        14 v~i~~y~D~~CP~cy~~~-~~l~~~~--~~~~~~~~v~v~~~p~~   55 (217)
                      |.|.+|+.-+||.|..+. ..|..++  .++.+  .++|++.||.
T Consensus         1 V~v~vyyESlCPd~~~fi~~~L~p~~~~~~~~~--~~~l~lvP~G   43 (108)
T PF03227_consen    1 VNVEVYYESLCPDCRRFITNQLFPVWTYEKLSD--IMNLTLVPFG   43 (108)
T ss_pred             CEEEEEEEecCHhHHHHHHHHHHHHHHHhhccc--eEEEEEEEEe
Confidence            679999999999998764 4566544  44443  5788888886

It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=90.05  E-value=1.4  Score=28.64  Aligned_cols=57  Identities=19%  Similarity=0.195  Sum_probs=33.0

Q ss_pred             HHHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCH
Q 027910          146 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPP  205 (217)
Q Consensus       146 ~~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~  205 (217)
                      ..+.++..+.+++-..+.++..+....++..  .....|..++|+++++|+ .+.|.+..
T Consensus        14 ~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~g~~~~P~v~~~g~-~igg~~~~   70 (82)
T cd03419          14 KRAKSLLKELGVKPAVVELDQHEDGSEIQDY--LQELTGQRTVPNVFIGGK-FIGGCDDL   70 (82)
T ss_pred             HHHHHHHHHcCCCcEEEEEeCCCChHHHHHH--HHHHhCCCCCCeEEECCE-EEcCHHHH
Confidence            4566777777775443333332222222222  223458899999999998 46666433

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>PRK10329 glutaredoxin-like protein; Provisional

Probab=89.99  E-value=0.49  Score=31.35  Aligned_cols=33  Identities=21%  Similarity=0.478  Sum_probs=24.0

Q ss_pred             eEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeec
Q 027910           14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPF   54 (217)
Q Consensus        14 v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~   54 (217)
                      ++|.+|+-..||+|..+...|.+        .++.++....
T Consensus         1 ~~v~lYt~~~Cp~C~~ak~~L~~--------~gI~~~~idi   33 (81)
T PRK10329          1 MRITIYTRNDCVQCHATKRAMES--------RGFDFEMINV   33 (81)
T ss_pred             CEEEEEeCCCCHhHHHHHHHHHH--------CCCceEEEEC
Confidence            36889999999999997766642        3566665544

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=89.83  E-value=0.56  Score=37.09  Aligned_cols=40  Identities=13%  Similarity=0.204  Sum_probs=30.9

Q ss_pred             HHHHHHhCCCCeecEEEE--CCee---eecCCCCHHHHHHHHHHH
Q 027910          176 EELKKYSANISGVPHFVL--NGKH---ELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       176 ~~~~a~~~gv~g~Pt~vv--~g~~---~~~G~~~~~~l~~~i~~~  215 (217)
                      +.+.+.+.||.++|||++  +|+.   .+.|..+.+.|...|+.+
T Consensus        66 ~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~~~~~l~~~i~~~  110 (215)
T TIGR02187        66 DKEEAEKYGVERVPTTIILEEGKDGGIRYTGIPAGYEFAALIEDI  110 (215)
T ss_pred             cHHHHHHcCCCccCEEEEEeCCeeeEEEEeecCCHHHHHHHHHHH
Confidence            446678899999999988  4543   357988888888887765

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=89.80  E-value=0.64  Score=33.71  Aligned_cols=47  Identities=21%  Similarity=0.148  Sum_probs=34.5

Q ss_pred             CcccCCcceEEEEEecccCch-hhhhHHHHHHHHHhcCCCC--ceeEEEe
Q 027910            6 SSSAGKKLIRIDVSSDTVCPW-CFVGKRNLDKAIASSKDQY--DFEIRWH   52 (217)
Q Consensus         6 ~~~~~~~~v~i~~y~D~~CP~-cy~~~~~l~~~~~~~~~~~--~v~v~~~   52 (217)
                      +...-..+..|.+|+...||. |-...+.|.++.++|....  ++.+.+.
T Consensus        16 ~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~v   65 (142)
T cd02968          16 TLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFI   65 (142)
T ss_pred             chHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEE
Confidence            333335678888889999998 9999999999998886432  3555543

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=89.72  E-value=0.39  Score=33.28  Aligned_cols=34  Identities=24%  Similarity=0.219  Sum_probs=25.4

Q ss_pred             HHHHhCCCCeecEEEE--CCe---eeecCCCCHHHHHHH
Q 027910          178 LKKYSANISGVPHFVL--NGK---HELSGGQPPEVYLRA  211 (217)
Q Consensus       178 ~~a~~~gv~g~Pt~vv--~g~---~~~~G~~~~~~l~~~  211 (217)
                      ..+.+.||.++||+++  +|+   ....|..+.+.|.+.
T Consensus        69 ~l~~~~~v~~~Ptl~~~~~g~~~~~~~~g~~~~~~l~~f  107 (108)
T cd02996          69 DIADRYRINKYPTLKLFRNGMMMKREYRGQRSVEALAEF  107 (108)
T ss_pred             HHHHhCCCCcCCEEEEEeCCcCcceecCCCCCHHHHHhh
Confidence            4577889999999987  565   344688888877654

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=89.69  E-value=0.64  Score=30.22  Aligned_cols=33  Identities=24%  Similarity=0.496  Sum_probs=24.4

Q ss_pred             HHhCCCCeecEEEE--CCe--eeecCCCCHHHHHHHH
Q 027910          180 KYSANISGVPHFVL--NGK--HELSGGQPPEVYLRAF  212 (217)
Q Consensus       180 a~~~gv~g~Pt~vv--~g~--~~~~G~~~~~~l~~~i  212 (217)
                      +...|+.++|++++  +|+  ..+.|..+.+.|...|
T Consensus        56 ~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~i   92 (93)
T cd02947          56 AEEYGVRSIPTFLFFKNGKEVDRVVGADPKEELEEFL   92 (93)
T ss_pred             HHhcCcccccEEEEEECCEEEEEEecCCCHHHHHHHh
Confidence            45678999999988  565  3457887778877765

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=89.67  E-value=0.75  Score=32.86  Aligned_cols=39  Identities=15%  Similarity=0.135  Sum_probs=30.0

Q ss_pred             HHHHHHhCCCC--eecEEEE--CCe----eeecCC-CCHHHHHHHHHH
Q 027910          176 EELKKYSANIS--GVPHFVL--NGK----HELSGG-QPPEVYLRAFQV  214 (217)
Q Consensus       176 ~~~~a~~~gv~--g~Pt~vv--~g~----~~~~G~-~~~~~l~~~i~~  214 (217)
                      +.+.+.+.||.  |.||+.+  +|.    ....|. +..+.|++.|.+
T Consensus        67 ~~~L~~~y~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~  114 (116)
T cd03007          67 NMELGERYKLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKG  114 (116)
T ss_pred             hHHHHHHhCCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHh
Confidence            45688999999  9999966  563    235786 899999887764

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>PHA02125 thioredoxin-like protein

Probab=89.64  E-value=0.73  Score=29.83  Aligned_cols=34  Identities=15%  Similarity=0.175  Sum_probs=23.1

Q ss_pred             HHHHhCCCCeecEEEECCe--eeecCCCC-HHHHHHHH
Q 027910          178 LKKYSANISGVPHFVLNGK--HELSGGQP-PEVYLRAF  212 (217)
Q Consensus       178 ~~a~~~gv~g~Pt~vv~g~--~~~~G~~~-~~~l~~~i  212 (217)
                      +.+.+.+|.++|||+ +|+  ..+.|..+ ..+|.+.|
T Consensus        37 ~l~~~~~v~~~PT~~-~g~~~~~~~G~~~~~~~l~~~~   73 (75)
T PHA02125         37 ELTAKHHIRSLPTLV-NTSTLDRFTGVPRNVAELKEKL   73 (75)
T ss_pred             HHHHHcCCceeCeEE-CCEEEEEEeCCCCcHHHHHHHh
Confidence            457889999999998 665  34678643 35555443

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=89.51  E-value=0.97  Score=32.58  Aligned_cols=49  Identities=24%  Similarity=0.154  Sum_probs=36.9

Q ss_pred             ccCcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCC-CceeEEEe
Q 027910            4 SVSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQ-YDFEIRWH   52 (217)
Q Consensus         4 ~~~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~-~~v~v~~~   52 (217)
                      .++...-..++.|..|+-.-||.|-...+.+.++.++++++ .+++|.+.
T Consensus         9 ~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~V   58 (132)
T cd02964           9 VVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFV   58 (132)
T ss_pred             cccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEE
Confidence            34444545688889999999999999999999988887643 24666544

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=89.33  E-value=0.93  Score=32.49  Aligned_cols=48  Identities=23%  Similarity=0.143  Sum_probs=34.9

Q ss_pred             cCcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCC-CceeEEEe
Q 027910            5 VSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQ-YDFEIRWH   52 (217)
Q Consensus         5 ~~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~-~~v~v~~~   52 (217)
                      ++.+.-..++.|.+|+-.-||.|-...+.+.++.+++... .+++|.+.
T Consensus        11 v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~i   59 (131)
T cd03009          11 VPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFI   59 (131)
T ss_pred             ccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEE
Confidence            4444445577888888899999999999999888877643 24555543

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=89.24  E-value=0.95  Score=30.67  Aligned_cols=31  Identities=10%  Similarity=-0.054  Sum_probs=26.7

Q ss_pred             ceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910           13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKD   43 (217)
Q Consensus        13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~   43 (217)
                      +..+..|+.+-|++|....+.+.++.+.+.+
T Consensus        19 ~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~   49 (104)
T cd02995          19 KDVLVEFYAPWCGHCKALAPIYEELAEKLKG   49 (104)
T ss_pred             CcEEEEEECCCCHHHHHHhhHHHHHHHHhcC
Confidence            5677888889999999999999999887764

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=89.01  E-value=0.72  Score=33.71  Aligned_cols=47  Identities=21%  Similarity=0.058  Sum_probs=32.5

Q ss_pred             cCcccCCcceEEEEEecc-cCchhhhhHHHHHHHHHhcCCCCceeEEEe
Q 027910            5 VSSSAGKKLIRIDVSSDT-VCPWCFVGKRNLDKAIASSKDQYDFEIRWH   52 (217)
Q Consensus         5 ~~~~~~~~~v~i~~y~D~-~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~   52 (217)
                      ++.+.-..++.|..|+-. -||.|-...+.+.++.+.|+. .++.+...
T Consensus        21 ~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~-~~v~~v~v   68 (146)
T PF08534_consen   21 VSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKD-KGVDVVGV   68 (146)
T ss_dssp             EEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT-TTCEEEEE
T ss_pred             ecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhcc-CceEEEEe
Confidence            344444445555555555 999999999999999877663 45777654

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>PRK10824 glutaredoxin-4; Provisional

Probab=88.97  E-value=1  Score=32.12  Aligned_cols=55  Identities=18%  Similarity=0.112  Sum_probs=32.6

Q ss_pred             HHHHHHHHHcCCCcccccc-cCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHH
Q 027910          146 EFLVECARKVGVEGAAEFL-DDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEV  207 (217)
Q Consensus       146 ~~L~~ia~~~Gld~~~~~l-~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~  207 (217)
                      ....++....|++...+.+ ++++    ++....  ...|-.-+|.++|||+ .|.|.+....
T Consensus        34 ~~ak~lL~~~~i~~~~idi~~d~~----~~~~l~--~~sg~~TVPQIFI~G~-~IGG~ddl~~   89 (115)
T PRK10824         34 AQAVQALSACGERFAYVDILQNPD----IRAELP--KYANWPTFPQLWVDGE-LVGGCDIVIE   89 (115)
T ss_pred             HHHHHHHHHcCCCceEEEecCCHH----HHHHHH--HHhCCCCCCeEEECCE-EEcChHHHHH
Confidence            3445566667776655522 2332    333222  2347888999999999 5777754433

>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC

Probab=88.81  E-value=1  Score=31.77  Aligned_cols=32  Identities=16%  Similarity=0.209  Sum_probs=24.6

Q ss_pred             EEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecc
Q 027910           16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF   55 (217)
Q Consensus        16 i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~   55 (217)
                      |.+|+-+.||+|..+...|.        +.++.++++.+.
T Consensus         1 i~iY~~~~C~~c~ka~~~L~--------~~~i~~~~idi~   32 (111)
T cd03036           1 LKFYEYPKCSTCRKAKKWLD--------EHGVDYTAIDIV   32 (111)
T ss_pred             CEEEECCCCHHHHHHHHHHH--------HcCCceEEeccc
Confidence            56899999999999887664        236777777664

Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.

>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=88.74  E-value=1.5  Score=30.70  Aligned_cols=56  Identities=20%  Similarity=0.191  Sum_probs=33.5

Q ss_pred             HHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCH
Q 027910          147 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPP  205 (217)
Q Consensus       147 ~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~  205 (217)
                      .++++....|.++....++..+-...++....  .--|-..+|.++|+|+ .+.|..+.
T Consensus        29 ~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~--~~tg~~tvP~vFI~Gk-~iGG~~dl   84 (104)
T KOG1752|consen   29 RAKELLSDLGVNPKVVELDEDEDGSEIQKALK--KLTGQRTVPNVFIGGK-FIGGASDL   84 (104)
T ss_pred             HHHHHHHhCCCCCEEEEccCCCCcHHHHHHHH--HhcCCCCCCEEEECCE-EEcCHHHH
Confidence            35666666777666554444333334444433  2356679999999999 45665433

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=88.71  E-value=1  Score=29.87  Aligned_cols=29  Identities=14%  Similarity=0.027  Sum_probs=25.2

Q ss_pred             eEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910           14 IRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (217)
Q Consensus        14 v~i~~y~D~~CP~cy~~~~~l~~~~~~~~   42 (217)
                      ..+.+|+...||+|-...+.+.++.+.+.
T Consensus        17 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~   45 (101)
T cd02961          17 DVLVEFYAPWCGHCKALAPEYEKLAKELK   45 (101)
T ss_pred             cEEEEEECCCCHHHHhhhHHHHHHHHHhc
Confidence            77888888999999999999998887663

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=88.66  E-value=0.8  Score=32.22  Aligned_cols=40  Identities=20%  Similarity=0.203  Sum_probs=29.3

Q ss_pred             CcceEEEEEecc-cCchhhhhHHHHHHHHHhcCCCCceeEEE
Q 027910           11 KKLIRIDVSSDT-VCPWCFVGKRNLDKAIASSKDQYDFEIRW   51 (217)
Q Consensus        11 ~~~v~i~~y~D~-~CP~cy~~~~~l~~~~~~~~~~~~v~v~~   51 (217)
                      ..+..|.+|+.. -||.|....+.|.++.++|+. .++++..
T Consensus        24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~-~~~~vi~   64 (124)
T PF00578_consen   24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKD-KGVQVIG   64 (124)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT-TTEEEEE
T ss_pred             CCCcEEEEEeCccCccccccchhHHHHHhhhhcc-ceEEeee
Confidence            445555555555 999999999999999988873 4566643

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=88.64  E-value=0.67  Score=30.34  Aligned_cols=25  Identities=28%  Similarity=0.515  Sum_probs=20.6

Q ss_pred             CcceEEEEEecccCchhhhhHHHHH
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLD   35 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~   35 (217)
                      ..+.+|.+|+-..||||..+...|.
T Consensus         5 ~~~~~V~ly~~~~Cp~C~~ak~~L~   29 (79)
T TIGR02190         5 RKPESVVVFTKPGCPFCAKAKATLK   29 (79)
T ss_pred             CCCCCEEEEECCCCHhHHHHHHHHH
Confidence            3466789999999999999777664

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>TIGR02740 TraF-like TraF-like protein

Probab=88.51  E-value=1.7  Score=35.85  Aligned_cols=71  Identities=15%  Similarity=0.089  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHcCCCcccccccCcc---cchhHHHHHHHHHhCCCCeecEEEE-C--C-ee--eecCCCCHHHHHHHHHHH
Q 027910          145 KEFLVECARKVGVEGAAEFLDDPN---SGLNEVHEELKKYSANISGVPHFVL-N--G-KH--ELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       145 ~~~L~~ia~~~Gld~~~~~l~~~~---~~~~~~~~~~~a~~~gv~g~Pt~vv-~--g-~~--~~~G~~~~~~l~~~i~~~  215 (217)
                      ...|.+++++.|+..-.+.++...   +.. +..+...+..+||.++||+++ +  | +.  ...|..+.++|.+.|..+
T Consensus       185 ~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~-~~~d~~la~~~gV~~vPtl~Lv~~~~~~v~~v~~G~~s~~eL~~~i~~~  263 (271)
T TIGR02740       185 APILQAFEDRYGIEVLPVSVDGGPLPGFPN-ARPDAGQAQQLKIRTVPAVFLADPDPNQFTPIGFGVMSADELVDRILLA  263 (271)
T ss_pred             hHHHHHHHHHcCcEEEEEeCCCCccccCCc-ccCCHHHHHHcCCCcCCeEEEEECCCCEEEEEEeCCCCHHHHHHHHHHH
Confidence            467888998888643222333211   111 123345678899999999977 2  3 22  235888999999988776


Q ss_pred             h
Q 027910          216 A  216 (217)
Q Consensus       216 ~  216 (217)
                      +
T Consensus       264 a  264 (271)
T TIGR02740       264 A  264 (271)
T ss_pred             h
Confidence            5

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>PRK09381 trxA thioredoxin; Provisional

Probab=88.46  E-value=0.95  Score=31.30  Aligned_cols=32  Identities=13%  Similarity=-0.052  Sum_probs=27.3

Q ss_pred             cceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD   43 (217)
Q Consensus        12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~   43 (217)
                      ....|..|+-+.||.|....+.+.++.++|.+
T Consensus        21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~   52 (109)
T PRK09381         21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQG   52 (109)
T ss_pred             CCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC
Confidence            44577888889999999999999999988764

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=88.43  E-value=1.3  Score=29.90  Aligned_cols=37  Identities=22%  Similarity=0.179  Sum_probs=29.1

Q ss_pred             cceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR   50 (217)
Q Consensus        12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~   50 (217)
                      .+..|.+|+...||.|....+.+.++.+++.+  ++.+.
T Consensus        17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~--~v~~~   53 (103)
T PF00085_consen   17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD--NVKFA   53 (103)
T ss_dssp             SSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT--TSEEE
T ss_pred             CCCEEEEEeCCCCCccccccceeccccccccc--ccccc
Confidence            46667777778999999999999999998874  44443

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=88.14  E-value=1.5  Score=29.74  Aligned_cols=38  Identities=16%  Similarity=0.149  Sum_probs=30.3

Q ss_pred             cceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR   50 (217)
Q Consensus        12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~   50 (217)
                      .+..|.+|+...||.|....+.+.++.+++. ..++.+.
T Consensus        19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~   56 (116)
T cd02966          19 GKVVLVNFWASWCPPCRAEMPELEALAKEYK-DDGVEVV   56 (116)
T ss_pred             CCEEEEEeecccChhHHHHhHHHHHHHHHhC-CCCeEEE
Confidence            5778888889999999999999999988775 2345544

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=88.09  E-value=3.7  Score=26.00  Aligned_cols=61  Identities=11%  Similarity=0.098  Sum_probs=31.5

Q ss_pred             HHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHH
Q 027910          148 LVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQ  213 (217)
Q Consensus       148 L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~  213 (217)
                      +..++.+.|++-....+++..    ...+.-.....|+.++|+++++|...+. .....++...|+
T Consensus        16 ~~~~L~~~~~~~~~idi~~~~----~~~~~~~~~~~~~~~vP~i~~~~g~~l~-~~~~~~~~~~l~   76 (77)
T TIGR02200        16 LMRTLDKLGAAYEWVDIEEDE----GAADRVVSVNNGNMTVPTVKFADGSFLT-NPSAAQVKAKLQ   76 (77)
T ss_pred             HHHHHHHcCCceEEEeCcCCH----hHHHHHHHHhCCCceeCEEEECCCeEec-CCCHHHHHHHhh
Confidence            445556667654433332211    1111212224589999999886542444 445566666554

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=88.08  E-value=0.73  Score=29.45  Aligned_cols=21  Identities=29%  Similarity=0.812  Sum_probs=17.7

Q ss_pred             EEEEEecccCchhhhhHHHHH
Q 027910           15 RIDVSSDTVCPWCFVGKRNLD   35 (217)
Q Consensus        15 ~i~~y~D~~CP~cy~~~~~l~   35 (217)
                      +|.+|+-..||||-.+...|.
T Consensus         1 ~i~ly~~~~Cp~C~~ak~~L~   21 (75)
T cd03418           1 KVEIYTKPNCPYCVRAKALLD   21 (75)
T ss_pred             CEEEEeCCCChHHHHHHHHHH
Confidence            378999999999999877665

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=88.00  E-value=0.77  Score=31.18  Aligned_cols=33  Identities=30%  Similarity=0.473  Sum_probs=24.3

Q ss_pred             HHHhCCCCeecEEEE--CCe--eeecCCCCHHHHHHH
Q 027910          179 KKYSANISGVPHFVL--NGK--HELSGGQPPEVYLRA  211 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~g~--~~~~G~~~~~~l~~~  211 (217)
                      .+.+.|+.++||+++  +|+  ..+.|....+.+.+.
T Consensus        67 ~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~  103 (104)
T cd02997          67 LKEEYNVKGFPTFKYFENGKFVEKYEGERTAEDIIEF  103 (104)
T ss_pred             HHHhCCCccccEEEEEeCCCeeEEeCCCCCHHHHHhh
Confidence            456789999999977  455  345788887777654

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=87.73  E-value=1.7  Score=30.88  Aligned_cols=41  Identities=12%  Similarity=0.153  Sum_probs=33.6

Q ss_pred             HHHHHHhCCCCeecEEEE----CCee----eecCCCCHHHHHHHHHHHh
Q 027910          176 EELKKYSANISGVPHFVL----NGKH----ELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       176 ~~~~a~~~gv~g~Pt~vv----~g~~----~~~G~~~~~~l~~~i~~~~  216 (217)
                      ..+.+..+++.++|+++|    +++.    .+.|..++++|...|..+.
T Consensus        65 g~~la~~l~~~~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~  113 (116)
T cd02991          65 GYRVSQALRERTYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIM  113 (116)
T ss_pred             HHHHHHHhCCCCCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHHHH
Confidence            477788999999999966    4443    4689999999999998764

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=87.70  E-value=1.6  Score=29.38  Aligned_cols=33  Identities=12%  Similarity=-0.011  Sum_probs=28.5

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD   43 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~   43 (217)
                      ..++.+..|++..|+.|....+.+.++.+.+..
T Consensus        12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~   44 (102)
T TIGR01126        12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKG   44 (102)
T ss_pred             cCCcEEEEEECCCCHHHHhhChHHHHHHHHhcc
Confidence            467889999999999999999999888777764

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=87.69  E-value=1.1  Score=30.55  Aligned_cols=31  Identities=10%  Similarity=0.002  Sum_probs=27.3

Q ss_pred             ceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910           13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKD   43 (217)
Q Consensus        13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~   43 (217)
                      ++.+..|+.+-||.|....+.+.++.++|++
T Consensus        19 ~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~   49 (101)
T cd03003          19 EIWFVNFYSPRCSHCHDLAPTWREFAKEMDG   49 (101)
T ss_pred             CeEEEEEECCCChHHHHhHHHHHHHHHHhcC
Confidence            6778888889999999999999999988763

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=87.60  E-value=0.9  Score=41.56  Aligned_cols=42  Identities=12%  Similarity=0.251  Sum_probs=33.6

Q ss_pred             HHHHHHhCCCCeecEEEE---CCee----eecCCCCHHHHHHHHHHHhC
Q 027910          176 EELKKYSANISGVPHFVL---NGKH----ELSGGQPPEVYLRAFQVAAN  217 (217)
Q Consensus       176 ~~~~a~~~gv~g~Pt~vv---~g~~----~~~G~~~~~~l~~~i~~~~~  217 (217)
                      +.+.+.+.|+.|+||+++   +|+.    .+.|..+.+.+.+.|+++.|
T Consensus       523 ~~~l~~~~~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~~  571 (571)
T PRK00293        523 DVALLKHYNVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQP  571 (571)
T ss_pred             hHHHHHHcCCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhcC
Confidence            345667899999999987   3552    45799999999999999865

>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=87.38  E-value=0.85  Score=35.87  Aligned_cols=35  Identities=14%  Similarity=0.277  Sum_probs=30.0

Q ss_pred             HHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHH
Q 027910          179 KKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQ  213 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~  213 (217)
                      .+-+.||.+||+++++|+....+..++++++.+|+
T Consensus        51 ~~~~~~V~SvP~Vf~DGel~~~dpVdp~~ies~~~   85 (265)
T COG5494          51 LAFEKGVISVPSVFIDGELVYADPVDPEEIESILS   85 (265)
T ss_pred             HHhhcceeecceEEEcCeEEEcCCCCHHHHHHHHc
Confidence            34577999999999999976788889999998875

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=87.26  E-value=1  Score=30.24  Aligned_cols=34  Identities=29%  Similarity=0.467  Sum_probs=22.5

Q ss_pred             HHHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHH
Q 027910          178 LKKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAF  212 (217)
Q Consensus       178 ~~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i  212 (217)
                      ..+.+.|+.++||+++  +|+.  .+.|. ..+.|.+.|
T Consensus        59 ~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~~   96 (97)
T cd02984          59 EISEKFEITAVPTFVFFRNGTIVDRVSGA-DPKELAKKV   96 (97)
T ss_pred             HHHHhcCCccccEEEEEECCEEEEEEeCC-CHHHHHHhh
Confidence            3456789999999987  5652  34576 455555544

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=87.07  E-value=0.95  Score=30.96  Aligned_cols=34  Identities=24%  Similarity=0.252  Sum_probs=23.6

Q ss_pred             HHHHhCCCCeecEEEE--CC-e--eeecCCCC-HHHHHHH
Q 027910          178 LKKYSANISGVPHFVL--NG-K--HELSGGQP-PEVYLRA  211 (217)
Q Consensus       178 ~~a~~~gv~g~Pt~vv--~g-~--~~~~G~~~-~~~l~~~  211 (217)
                      ..+.+.||.++||+++  +| +  ..+.|..+ .+.|...
T Consensus        64 ~~~~~~~i~~~Pt~~~~~~g~~~~~~~~G~~~~~~~l~~~  103 (104)
T cd03004          64 SLCQQANIRAYPTIRLYPGNASKYHSYNGWHRDADSILEF  103 (104)
T ss_pred             HHHHHcCCCcccEEEEEcCCCCCceEccCCCCCHHHHHhh
Confidence            3466789999999988  44 4  34568776 7776543

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=86.95  E-value=1.2  Score=29.83  Aligned_cols=33  Identities=6%  Similarity=-0.176  Sum_probs=27.7

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD   43 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~   43 (217)
                      ...+.+..|+-+-||.|....+.+.++.+.|.+
T Consensus        11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~   43 (96)
T cd02956          11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG   43 (96)
T ss_pred             CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC
Confidence            356778888889999999999999999887753

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=86.73  E-value=1.1  Score=30.91  Aligned_cols=35  Identities=11%  Similarity=0.184  Sum_probs=25.2

Q ss_pred             HHHHhCCCCeecEEEE--CCe-------eeecCCCCHHHHHHHH
Q 027910          178 LKKYSANISGVPHFVL--NGK-------HELSGGQPPEVYLRAF  212 (217)
Q Consensus       178 ~~a~~~gv~g~Pt~vv--~g~-------~~~~G~~~~~~l~~~i  212 (217)
                      ..+.+.||.|+||+++  +|+       ..+.|..+.+.|.+.|
T Consensus        65 ~~~~~~~i~~~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi  108 (109)
T cd03002          65 PLCGKYGVQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFV  108 (109)
T ss_pred             HHHHHcCCCcCCEEEEEeCCCcccccccccccCccCHHHHHHHh
Confidence            4456789999999988  332       2346888888877665

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=86.69  E-value=0.83  Score=29.24  Aligned_cols=32  Identities=22%  Similarity=0.263  Sum_probs=23.2

Q ss_pred             EEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecc
Q 027910           16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF   55 (217)
Q Consensus        16 i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~   55 (217)
                      |.+|+-..||+|..+...|.+        .++.++.+.+.
T Consensus         1 v~ly~~~~Cp~C~~ak~~L~~--------~~i~~~~~di~   32 (72)
T TIGR02194         1 ITVYSKNNCVQCKMTKKALEE--------HGIAFEEINID   32 (72)
T ss_pred             CEEEeCCCCHHHHHHHHHHHH--------CCCceEEEECC
Confidence            468999999999997776642        35666665543

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=86.60  E-value=0.59  Score=30.43  Aligned_cols=21  Identities=33%  Similarity=0.627  Sum_probs=17.9

Q ss_pred             EEEEecccCchhhhhHHHHHH
Q 027910           16 IDVSSDTVCPWCFVGKRNLDK   36 (217)
Q Consensus        16 i~~y~D~~CP~cy~~~~~l~~   36 (217)
                      |.+|+-..||||..+...|.+
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~   22 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKE   22 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHH
Confidence            789999999999998776654

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=86.50  E-value=1.1  Score=30.40  Aligned_cols=34  Identities=15%  Similarity=0.256  Sum_probs=24.6

Q ss_pred             HHHHhCCCCeecEEEE--CCe--eeecCCCCHHHHHHH
Q 027910          178 LKKYSANISGVPHFVL--NGK--HELSGGQPPEVYLRA  211 (217)
Q Consensus       178 ~~a~~~gv~g~Pt~vv--~g~--~~~~G~~~~~~l~~~  211 (217)
                      ..+.+.+|.++||+++  +|+  ..+.|..+.+.|.+.
T Consensus        64 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~  101 (102)
T cd03005          64 ELCSEFQVRGYPTLLLFKDGEKVDKYKGTRDLDSLKEF  101 (102)
T ss_pred             hhHhhcCCCcCCEEEEEeCCCeeeEeeCCCCHHHHHhh
Confidence            3456789999999987  554  235788888877654

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=86.44  E-value=0.75  Score=29.90  Aligned_cols=20  Identities=25%  Similarity=0.673  Sum_probs=17.1

Q ss_pred             EEEEecccCchhhhhHHHHH
Q 027910           16 IDVSSDTVCPWCFVGKRNLD   35 (217)
Q Consensus        16 i~~y~D~~CP~cy~~~~~l~   35 (217)
                      |.+|+-+.||+|-.+...|.
T Consensus         1 v~ly~~~~Cp~C~~a~~~L~   20 (79)
T TIGR02181         1 VTIYTKPYCPYCTRAKALLS   20 (79)
T ss_pred             CEEEecCCChhHHHHHHHHH
Confidence            57899999999999887765

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=86.34  E-value=1.3  Score=31.01  Aligned_cols=33  Identities=12%  Similarity=0.006  Sum_probs=28.8

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD   43 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~   43 (217)
                      ..++.|..|+-+-||.|....+.+.++.+++++
T Consensus        23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~   55 (111)
T cd02963          23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQELEP   55 (111)
T ss_pred             CCCeEEEEEECCccHhHHHhhHHHHHHHHHHHh
Confidence            567888888889999999999999999988763

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=86.32  E-value=0.62  Score=32.14  Aligned_cols=22  Identities=32%  Similarity=0.365  Sum_probs=18.3

Q ss_pred             eEEEEEecccCchhhhhHHHHH
Q 027910           14 IRIDVSSDTVCPWCFVGKRNLD   35 (217)
Q Consensus        14 v~i~~y~D~~CP~cy~~~~~l~   35 (217)
                      ..|.+|+-+.||||..+...|.
T Consensus         8 ~~Vvvysk~~Cp~C~~ak~~L~   29 (99)
T TIGR02189         8 KAVVIFSRSSCCMCHVVKRLLL   29 (99)
T ss_pred             CCEEEEECCCCHHHHHHHHHHH
Confidence            4588999999999998777554

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>PRK10638 glutaredoxin 3; Provisional

Probab=86.27  E-value=0.79  Score=30.27  Aligned_cols=21  Identities=24%  Similarity=0.766  Sum_probs=17.9

Q ss_pred             EEEEEecccCchhhhhHHHHH
Q 027910           15 RIDVSSDTVCPWCFVGKRNLD   35 (217)
Q Consensus        15 ~i~~y~D~~CP~cy~~~~~l~   35 (217)
                      +|.+|+-..||||..+...|.
T Consensus         3 ~v~ly~~~~Cp~C~~a~~~L~   23 (83)
T PRK10638          3 NVEIYTKATCPFCHRAKALLN   23 (83)
T ss_pred             cEEEEECCCChhHHHHHHHHH
Confidence            588999999999999777665

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=86.21  E-value=1.7  Score=29.32  Aligned_cols=30  Identities=13%  Similarity=-0.053  Sum_probs=25.6

Q ss_pred             ceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910           13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (217)
Q Consensus        13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~   42 (217)
                      +..+..|+..-||.|....+.+.++.+.+.
T Consensus        19 ~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~   48 (105)
T cd02998          19 KDVLVEFYAPWCGHCKNLAPEYEKLAAVFA   48 (105)
T ss_pred             CcEEEEEECCCCHHHHhhChHHHHHHHHhC
Confidence            457788889999999999999999888765

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=86.10  E-value=17  Score=29.69  Aligned_cols=92  Identities=15%  Similarity=0.138  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHH----hhcCCCCCC---HHHHHHHHHHcCCCcccccccC---cccchhHHHHHHHHHhCCCCeecEEEE
Q 027910          124 QHNLAEELFLGY----FTQGKYIGD---KEFLVECARKVGVEGAAEFLDD---PNSGLNEVHEELKKYSANISGVPHFVL  193 (217)
Q Consensus       124 ~~~~~~al~~a~----~~~g~~i~~---~~~L~~ia~~~Gld~~~~~l~~---~~~~~~~~~~~~~a~~~gv~g~Pt~vv  193 (217)
                      ...++..|.+.+    |-++.+.-+   ..+|..++++.|++.-.+.++.   +..... .-|...+..+||.-||++++
T Consensus       141 ~~~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~-~~d~gqa~~l~v~~~Pal~L  219 (256)
T TIGR02739       141 KEKAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNS-RSDSGQAQHLGVKYFPALYL  219 (256)
T ss_pred             HHHHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCc-cCChHHHHhcCCccCceEEE
Confidence            566777777664    445554333   3678889999998765542332   222222 23677889999999999977


Q ss_pred             ---C-Cee-ee-cCCCCHHHHHHHHHHHh
Q 027910          194 ---N-GKH-EL-SGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       194 ---~-g~~-~~-~G~~~~~~l~~~i~~~~  216 (217)
                         + +++ .| .|..+.++|.+.|..++
T Consensus       220 v~~~t~~~~pv~~G~iS~deL~~Ri~~v~  248 (256)
T TIGR02739       220 VNPKSQKMSPLAYGFISQDELKERILNVL  248 (256)
T ss_pred             EECCCCcEEEEeeccCCHHHHHHHHHHHH
Confidence               2 443 33 69999999999887765

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=86.09  E-value=1.6  Score=29.78  Aligned_cols=30  Identities=20%  Similarity=0.003  Sum_probs=26.1

Q ss_pred             ceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910           13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (217)
Q Consensus        13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~   42 (217)
                      .+.+..|+..-||.|....+.+.++.+++.
T Consensus        20 ~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~   49 (104)
T cd03004          20 EPWLVDFYAPWCGPCQALLPELRKAARALK   49 (104)
T ss_pred             CeEEEEEECCCCHHHHHHHHHHHHHHHHhc
Confidence            367888888999999999999999988775

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=86.00  E-value=1.4  Score=31.06  Aligned_cols=30  Identities=7%  Similarity=-0.102  Sum_probs=26.8

Q ss_pred             ceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910           13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (217)
Q Consensus        13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~   42 (217)
                      ...+..|+.+.||.|....+.+.++.++|+
T Consensus        23 ~~vvV~f~a~~c~~C~~~~p~l~~la~~~~   52 (113)
T cd02989          23 ERVVCHFYHPEFFRCKIMDKHLEILAKKHL   52 (113)
T ss_pred             CcEEEEEECCCCccHHHHHHHHHHHHHHcC
Confidence            567888889999999999999999988775

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=85.96  E-value=3.5  Score=27.88  Aligned_cols=63  Identities=14%  Similarity=0.055  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHcCCCcccc-cccCcccchhHHHHHHHHHhCCCC--eecEEEE--C--C-eeeecCC-CCHHHHHHHHHHH
Q 027910          145 KEFLVECARKVGVEGAAE-FLDDPNSGLNEVHEELKKYSANIS--GVPHFVL--N--G-KHELSGG-QPPEVYLRAFQVA  215 (217)
Q Consensus       145 ~~~L~~ia~~~Gld~~~~-~l~~~~~~~~~~~~~~~a~~~gv~--g~Pt~vv--~--g-~~~~~G~-~~~~~l~~~i~~~  215 (217)
                      ...+.++|++.. +.-.| .++.++       ....+...|+.  ++|++++  +  | +|...+. .+.+.+.+.|++.
T Consensus        31 ~~~~~~vA~~~~-~~v~f~~vd~~~-------~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~~~~l~~fi~~~  102 (103)
T cd02982          31 RERFKEVAKKFK-GKLLFVVVDADD-------FGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELTAESLEEFVEDF  102 (103)
T ss_pred             HHHHHHHHHHhC-CeEEEEEEchHh-------hHHHHHHcCCChhhCCEEEEEecccccccCCCccccCHHHHHHHHHhh
Confidence            355667777764 22233 444332       33467788998  9999988  3  3 3444433 3788888887754

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=85.66  E-value=0.75  Score=29.38  Aligned_cols=21  Identities=38%  Similarity=0.562  Sum_probs=17.8

Q ss_pred             EEEEEecccCchhhhhHHHHH
Q 027910           15 RIDVSSDTVCPWCFVGKRNLD   35 (217)
Q Consensus        15 ~i~~y~D~~CP~cy~~~~~l~   35 (217)
                      +|.+|+...||+|..+.+.|.
T Consensus         1 ~v~ly~~~~C~~C~~~~~~L~   21 (77)
T TIGR02200         1 TITVYGTTWCGYCAQLMRTLD   21 (77)
T ss_pred             CEEEEECCCChhHHHHHHHHH
Confidence            478999999999999777664

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=85.63  E-value=1.1  Score=30.52  Aligned_cols=33  Identities=15%  Similarity=0.333  Sum_probs=24.5

Q ss_pred             HHHHhCCCCeecEEEE--CCe--eeecCCCCHHHHHH
Q 027910          178 LKKYSANISGVPHFVL--NGK--HELSGGQPPEVYLR  210 (217)
Q Consensus       178 ~~a~~~gv~g~Pt~vv--~g~--~~~~G~~~~~~l~~  210 (217)
                      ..+.+.+|.++||+++  +|+  ..+.|..+.+.|.+
T Consensus        63 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~   99 (101)
T cd03003          63 MLCRSQGVNSYPSLYVFPSGMNPEKYYGDRSKESLVK   99 (101)
T ss_pred             HHHHHcCCCccCEEEEEcCCCCcccCCCCCCHHHHHh
Confidence            4567889999999977  565  23578888877654

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=85.62  E-value=1.9  Score=31.71  Aligned_cols=33  Identities=12%  Similarity=0.019  Sum_probs=27.6

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD   43 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~   43 (217)
                      ..++.|.+|+-.-|++|....+.+.++.++|..
T Consensus        19 ~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~   51 (142)
T cd02950          19 NGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD   51 (142)
T ss_pred             CCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc
Confidence            346677788889999999999999999887753

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=85.51  E-value=1.5  Score=30.12  Aligned_cols=32  Identities=16%  Similarity=0.077  Sum_probs=26.7

Q ss_pred             cceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD   43 (217)
Q Consensus        12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~   43 (217)
                      ....+..|+.+-|++|....+.+.++.+++.+
T Consensus        18 ~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~   49 (109)
T cd03002          18 NYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG   49 (109)
T ss_pred             CCeEEEEEECCCCHHHHhhChHHHHHHHHhcC
Confidence            44578888889999999999999998887753

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=85.46  E-value=1.4  Score=36.05  Aligned_cols=41  Identities=5%  Similarity=-0.068  Sum_probs=32.6

Q ss_pred             ceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCC
Q 027910           13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPS   59 (217)
Q Consensus        13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~   59 (217)
                      ..-+.+|+.-.||+|-...+.|+.+.++|    ++.|.  |+++++.
T Consensus       151 ~~gL~fFy~~~C~~C~~~apil~~fa~~y----gi~v~--~VS~DG~  191 (256)
T TIGR02739       151 SYGLFFFYRGKSPISQKMAPVIQAFAKEY----GISVI--PISVDGT  191 (256)
T ss_pred             ceeEEEEECCCCchhHHHHHHHHHHHHHh----CCeEE--EEecCCC
Confidence            46789999999999999999999888754    56664  6666554

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>PTZ00062 glutaredoxin; Provisional

Probab=85.27  E-value=3.7  Score=32.39  Aligned_cols=32  Identities=13%  Similarity=0.084  Sum_probs=23.0

Q ss_pred             CCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHH
Q 027910          183 ANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       183 ~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~  215 (217)
                      .+|.++|||++  +|+-  .+.|+. +..+.+.|.+.
T Consensus        58 ~~V~~vPtfv~~~~g~~i~r~~G~~-~~~~~~~~~~~   93 (204)
T PTZ00062         58 DANNEYGVFEFYQNSQLINSLEGCN-TSTLVSFIRGW   93 (204)
T ss_pred             cCcccceEEEEEECCEEEeeeeCCC-HHHHHHHHHHH
Confidence            99999999988  6652  356774 66666666543

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=85.14  E-value=0.91  Score=30.01  Aligned_cols=21  Identities=33%  Similarity=0.744  Sum_probs=18.0

Q ss_pred             EEEEEecccCchhhhhHHHHH
Q 027910           15 RIDVSSDTVCPWCFVGKRNLD   35 (217)
Q Consensus        15 ~i~~y~D~~CP~cy~~~~~l~   35 (217)
                      .|++|+=+.||||-.+...|.
T Consensus         2 ~v~iyt~~~CPyC~~ak~~L~   22 (80)
T COG0695           2 NVTIYTKPGCPYCKRAKRLLD   22 (80)
T ss_pred             CEEEEECCCCchHHHHHHHHH
Confidence            578899999999999887665

>TIGR01068 thioredoxin thioredoxin

Probab=85.03  E-value=1.4  Score=29.40  Aligned_cols=31  Identities=10%  Similarity=-0.073  Sum_probs=25.6

Q ss_pred             cceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (217)
Q Consensus        12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~   42 (217)
                      .+..+.+|+...|+.|....+.+.++.++++
T Consensus        14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~   44 (101)
T TIGR01068        14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYE   44 (101)
T ss_pred             CCcEEEEEECCCCHHHHHhCHHHHHHHHHhc
Confidence            3466777778999999999999999887765

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=84.95  E-value=1  Score=30.07  Aligned_cols=22  Identities=23%  Similarity=0.545  Sum_probs=19.0

Q ss_pred             EEEEecccCchhhhhHHHHHHH
Q 027910           16 IDVSSDTVCPWCFVGKRNLDKA   37 (217)
Q Consensus        16 i~~y~D~~CP~cy~~~~~l~~~   37 (217)
                      |.+|+-+.||||-.+...|.++
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~   23 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKL   23 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHh
Confidence            6789999999999988877765

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=84.92  E-value=1.7  Score=32.16  Aligned_cols=42  Identities=19%  Similarity=0.124  Sum_probs=31.6

Q ss_pred             CcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeE
Q 027910            6 SSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEI   49 (217)
Q Consensus         6 ~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v   49 (217)
                      +...-..++.|..|+..-|| |-...+.|.++.++|.+ .++.+
T Consensus        16 ~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~-~~~~v   57 (152)
T cd00340          16 SLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKD-RGLVV   57 (152)
T ss_pred             eHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcC-CCEEE
Confidence            33333457888888899999 99999999999988863 34444

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=84.67  E-value=1.9  Score=29.11  Aligned_cols=31  Identities=16%  Similarity=0.058  Sum_probs=25.5

Q ss_pred             cceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (217)
Q Consensus        12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~   42 (217)
                      .+..+.+|+..-|+.|....+.+.++.+++.
T Consensus        18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~   48 (103)
T cd03001          18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALK   48 (103)
T ss_pred             CCcEEEEEECCCCHHHHHHhHHHHHHHHHhc
Confidence            4556777778999999999999999887765

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>TIGR02180 GRX_euk Glutaredoxin

Probab=84.66  E-value=0.77  Score=29.92  Aligned_cols=21  Identities=38%  Similarity=0.664  Sum_probs=17.9

Q ss_pred             EEEEecccCchhhhhHHHHHH
Q 027910           16 IDVSSDTVCPWCFVGKRNLDK   36 (217)
Q Consensus        16 i~~y~D~~CP~cy~~~~~l~~   36 (217)
                      |.+|+-..||||..+.+.|.+
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~   21 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAK   21 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHH
Confidence            578999999999998887764

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=84.56  E-value=2.6  Score=29.93  Aligned_cols=36  Identities=14%  Similarity=-0.030  Sum_probs=27.1

Q ss_pred             cCcccCCcceEEEEEecccCchhhhhHHHHHHHHHh
Q 027910            5 VSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIAS   40 (217)
Q Consensus         5 ~~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~   40 (217)
                      .+...-+.+..|..|+..-||.|....+.+.++.++
T Consensus        18 ~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~   53 (127)
T cd03010          18 LTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQ   53 (127)
T ss_pred             ccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHh
Confidence            343343456778888899999999999999887664

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=84.36  E-value=1.4  Score=32.81  Aligned_cols=59  Identities=10%  Similarity=0.008  Sum_probs=33.8

Q ss_pred             HHHHHHHHHcCCCcccccc-cCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHH
Q 027910          146 EFLVECARKVGVEGAAEFL-DDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEV  207 (217)
Q Consensus       146 ~~L~~ia~~~Gld~~~~~l-~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~  207 (217)
                      ...+.+.+..|++-++..+ .++++++.+.+-.  ....+-..+|.++|+|++ |.|+.....
T Consensus        20 ~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~--g~~~~~~tvPqVFI~G~~-IGG~del~~   79 (147)
T cd03031          20 NNVRAILESFRVKFDERDVSMDSGFREELRELL--GAELKAVSLPRVFVDGRY-LGGAEEVLR   79 (147)
T ss_pred             HHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHh--CCCCCCCCCCEEEECCEE-EecHHHHHH
Confidence            4566777888887665533 2333333333211  111234789999999994 677754433

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=84.09  E-value=2.4  Score=26.15  Aligned_cols=52  Identities=17%  Similarity=0.150  Sum_probs=30.2

Q ss_pred             HHHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCC
Q 027910          146 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQ  203 (217)
Q Consensus       146 ~~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~  203 (217)
                      ..+..+..+.|++-....+.+..   ...+.  .....|...+|++++||+ .+.|..
T Consensus        14 ~~~~~~L~~~~i~~~~~di~~~~---~~~~~--l~~~~~~~~~P~~~~~~~-~igg~~   65 (72)
T cd02066          14 KRAKRLLESLGIEFEEIDILEDG---ELREE--LKELSGWPTVPQIFINGE-FIGGYD   65 (72)
T ss_pred             HHHHHHHHHcCCcEEEEECCCCH---HHHHH--HHHHhCCCCcCEEEECCE-EEecHH
Confidence            44556667777665444332221   12222  223457789999999998 567763

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=83.94  E-value=1.7  Score=30.81  Aligned_cols=35  Identities=11%  Similarity=-0.001  Sum_probs=29.3

Q ss_pred             cCCcceEEEEEecc-cCchhhhhHHHHHHHHHhcCC
Q 027910            9 AGKKLIRIDVSSDT-VCPWCFVGKRNLDKAIASSKD   43 (217)
Q Consensus         9 ~~~~~v~i~~y~D~-~CP~cy~~~~~l~~~~~~~~~   43 (217)
                      ....++.|.+|.++ .||-|....|.+.++.++|++
T Consensus        25 ~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~   60 (111)
T cd02965          25 AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG   60 (111)
T ss_pred             hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC
Confidence            34567778888887 999999999999999998864

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>PHA03050 glutaredoxin; Provisional

Probab=83.68  E-value=1  Score=31.68  Aligned_cols=22  Identities=18%  Similarity=0.469  Sum_probs=18.1

Q ss_pred             eEEEEEecccCchhhhhHHHHH
Q 027910           14 IRIDVSSDTVCPWCFVGKRNLD   35 (217)
Q Consensus        14 v~i~~y~D~~CP~cy~~~~~l~   35 (217)
                      -+|.+|+-..||||-.+...|.
T Consensus        13 ~~V~vys~~~CPyC~~ak~~L~   34 (108)
T PHA03050         13 NKVTIFVKFTCPFCRNALDILN   34 (108)
T ss_pred             CCEEEEECCCChHHHHHHHHHH
Confidence            3588999999999998776664

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=83.66  E-value=2.4  Score=29.40  Aligned_cols=32  Identities=13%  Similarity=0.268  Sum_probs=27.1

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~   42 (217)
                      ..+..+..|+-+-||+|-...+.+.++.+.|.
T Consensus        20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~   51 (109)
T cd02993          20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLA   51 (109)
T ss_pred             cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhc
Confidence            34667788888999999999999999888776

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=83.61  E-value=1.9  Score=29.58  Aligned_cols=34  Identities=12%  Similarity=0.135  Sum_probs=24.6

Q ss_pred             HHHHhCCCCeecEEEE--CCe-eeecCCCCHHHHHHH
Q 027910          178 LKKYSANISGVPHFVL--NGK-HELSGGQPPEVYLRA  211 (217)
Q Consensus       178 ~~a~~~gv~g~Pt~vv--~g~-~~~~G~~~~~~l~~~  211 (217)
                      ..+.+.||.++||+++  +|. ..+.|..+.+.|.+.
T Consensus        63 ~l~~~~~V~~~PT~~lf~~g~~~~~~G~~~~~~l~~f   99 (100)
T cd02999          63 SLLSRYGVVGFPTILLFNSTPRVRYNGTRTLDSLAAF   99 (100)
T ss_pred             HHHHhcCCeecCEEEEEcCCceeEecCCCCHHHHHhh
Confidence            4457889999999977  342 345788888877653

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=83.50  E-value=3.6  Score=26.49  Aligned_cols=28  Identities=11%  Similarity=-0.081  Sum_probs=24.3

Q ss_pred             ceEEEEEecccCchhhhhHHHHHHHHHh
Q 027910           13 LIRIDVSSDTVCPWCFVGKRNLDKAIAS   40 (217)
Q Consensus        13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~   40 (217)
                      +..|.+|+...|++|....+.+.++.+.
T Consensus        11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~   38 (93)
T cd02947          11 KPVVVDFWAPWCGPCKAIAPVLEELAEE   38 (93)
T ss_pred             CcEEEEEECCCChhHHHhhHHHHHHHHH
Confidence            5668888889999999999999988875

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=83.25  E-value=2.9  Score=29.29  Aligned_cols=38  Identities=21%  Similarity=0.330  Sum_probs=27.4

Q ss_pred             HHHHHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHH
Q 027910          176 EELKKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQV  214 (217)
Q Consensus       176 ~~~~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~  214 (217)
                      ....+.+.+|.++|||++  +|+.  .+.|+. .+.+++.|.+
T Consensus        63 ~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~-~~~l~~~i~~  104 (106)
T KOG0907|consen   63 LEEVAKEFNVKAMPTFVFYKGGEEVDEVVGAN-KAELEKKIAK  104 (106)
T ss_pred             CHhHHHhcCceEeeEEEEEECCEEEEEEecCC-HHHHHHHHHh
Confidence            455678999999999988  6652  357874 4477777654

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=83.09  E-value=3.3  Score=28.93  Aligned_cols=31  Identities=13%  Similarity=0.064  Sum_probs=27.0

Q ss_pred             cceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (217)
Q Consensus        12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~   42 (217)
                      .+..|..|+.+.|+.|....+.++++.++|+
T Consensus        24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~   54 (113)
T cd02957          24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYP   54 (113)
T ss_pred             CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC
Confidence            3677778888999999999999999988775

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=83.04  E-value=2.4  Score=24.73  Aligned_cols=36  Identities=14%  Similarity=0.170  Sum_probs=24.9

Q ss_pred             EEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeec
Q 027910           16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPF   54 (217)
Q Consensus        16 i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~   54 (217)
                      |.+|+...||+|....+.+.++ + +. ..++.+.....
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~-~-~~-~~~~~~~~~~~   36 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAEL-A-LL-NKGVKFEAVDV   36 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHH-H-hh-CCCcEEEEEEc
Confidence            4578889999999999988876 2 22 23456655443

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>PTZ00051 thioredoxin; Provisional

Probab=82.96  E-value=1.7  Score=29.17  Aligned_cols=31  Identities=29%  Similarity=0.384  Sum_probs=21.4

Q ss_pred             HHHHhCCCCeecEEEE--CCee--eecCCCCHHHHH
Q 027910          178 LKKYSANISGVPHFVL--NGKH--ELSGGQPPEVYL  209 (217)
Q Consensus       178 ~~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~  209 (217)
                      ..+.+.|+.++||+++  +|+.  .+.|. ..+.|.
T Consensus        62 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~-~~~~~~   96 (98)
T PTZ00051         62 EVAEKENITSMPTFKVFKNGSVVDTLLGA-NDEALK   96 (98)
T ss_pred             HHHHHCCCceeeEEEEEeCCeEEEEEeCC-CHHHhh
Confidence            4577899999999988  5652  34676 445443

>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2

Probab=82.84  E-value=1.8  Score=27.83  Aligned_cols=21  Identities=29%  Similarity=0.638  Sum_probs=16.8

Q ss_pred             EEEEEecccCchhhhhHHHHH
Q 027910           15 RIDVSSDTVCPWCFVGKRNLD   35 (217)
Q Consensus        15 ~i~~y~D~~CP~cy~~~~~l~   35 (217)
                      +|.+|+...||+|..+.-.|.
T Consensus         1 ~i~Ly~~~~~p~c~kv~~~L~   21 (77)
T cd03040           1 KITLYQYKTCPFCCKVRAFLD   21 (77)
T ss_pred             CEEEEEcCCCHHHHHHHHHHH
Confidence            467889999999999776554

Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=82.65  E-value=2.4  Score=28.68  Aligned_cols=31  Identities=19%  Similarity=0.157  Sum_probs=26.5

Q ss_pred             ceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910           13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKD   43 (217)
Q Consensus        13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~   43 (217)
                      +..+..|+..-||+|....+.+.++.+.+..
T Consensus        18 ~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~   48 (104)
T cd02997          18 KHVLVMFYAPWCGHCKKMKPEFTKAATELKE   48 (104)
T ss_pred             CCEEEEEECCCCHHHHHhCHHHHHHHHHHhh
Confidence            4678888889999999999999998887763

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=82.60  E-value=1.6  Score=29.51  Aligned_cols=35  Identities=20%  Similarity=0.325  Sum_probs=24.7

Q ss_pred             HHHHHhCCCCeecEEEE--CC-e--eeecCCCCHHHHHHH
Q 027910          177 ELKKYSANISGVPHFVL--NG-K--HELSGGQPPEVYLRA  211 (217)
Q Consensus       177 ~~~a~~~gv~g~Pt~vv--~g-~--~~~~G~~~~~~l~~~  211 (217)
                      ...+.++++.++|++++  +| +  ..+.|..+.+.|.+.
T Consensus        65 ~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~  104 (105)
T cd02998          65 KDLAKKYGVSGFPTLKFFPKGSTEPVKYEGGRDLEDLVKF  104 (105)
T ss_pred             hhhHHhCCCCCcCEEEEEeCCCCCccccCCccCHHHHHhh
Confidence            35577899999999987  23 2  335687777777653

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=82.55  E-value=3.3  Score=28.54  Aligned_cols=31  Identities=13%  Similarity=0.055  Sum_probs=26.2

Q ss_pred             cceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (217)
Q Consensus        12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~   42 (217)
                      .+..+..|+.+-||+|....+.+.++.+++.
T Consensus        18 ~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~   48 (108)
T cd02996          18 AELVLVNFYADWCRFSQMLHPIFEEAAAKIK   48 (108)
T ss_pred             CCEEEEEEECCCCHHHHhhHHHHHHHHHHHh
Confidence            3567888889999999999999998887664

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=82.49  E-value=2.6  Score=28.47  Aligned_cols=35  Identities=20%  Similarity=0.431  Sum_probs=24.5

Q ss_pred             HHHHHhCCCCeecEEEE--CCe---eeecCCCCHHHHHHH
Q 027910          177 ELKKYSANISGVPHFVL--NGK---HELSGGQPPEVYLRA  211 (217)
Q Consensus       177 ~~~a~~~gv~g~Pt~vv--~g~---~~~~G~~~~~~l~~~  211 (217)
                      ...+.+.||.++|++++  +|+   +.+.|..+.+.|.+.
T Consensus        62 ~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~  101 (103)
T cd03001          62 QSLAQQYGVRGFPTIKVFGAGKNSPQDYQGGRTAKAIVSA  101 (103)
T ss_pred             HHHHHHCCCCccCEEEEECCCCcceeecCCCCCHHHHHHH
Confidence            34567889999999977  342   235687787777554

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>smart00594 UAS UAS domain

Probab=82.48  E-value=2.3  Score=30.34  Aligned_cols=36  Identities=11%  Similarity=0.182  Sum_probs=27.9

Q ss_pred             HHHHHhCCCCeecEEEE---CC-e------eeecCCCCHHHHHHHH
Q 027910          177 ELKKYSANISGVPHFVL---NG-K------HELSGGQPPEVYLRAF  212 (217)
Q Consensus       177 ~~~a~~~gv~g~Pt~vv---~g-~------~~~~G~~~~~~l~~~i  212 (217)
                      .+.+..+++.|+|+++|   +| +      ..+.|..++++|...|
T Consensus        76 ~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l  121 (122)
T smart00594       76 QRVSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL  121 (122)
T ss_pred             HHHHHhcCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence            56778899999999977   33 1      1457999999998765

>PTZ00051 thioredoxin; Provisional

Probab=82.38  E-value=2.6  Score=28.29  Aligned_cols=32  Identities=9%  Similarity=-0.064  Sum_probs=26.6

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~   42 (217)
                      ..+..+..|+...||.|....+.+.++.++++
T Consensus        17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~   48 (98)
T PTZ00051         17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYT   48 (98)
T ss_pred             cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC
Confidence            35677888888999999999999998887654

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=82.19  E-value=3  Score=28.57  Aligned_cols=32  Identities=19%  Similarity=0.040  Sum_probs=27.7

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~   42 (217)
                      +..+.+..|+-.-||.|....+.+.++.++|.
T Consensus        14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~   45 (104)
T cd03000          14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELK   45 (104)
T ss_pred             cCCeEEEEEECCCCHHHHhhChHHHHHHHHHH
Confidence            34577899999999999999999999888775

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=82.10  E-value=1.9  Score=30.99  Aligned_cols=39  Identities=10%  Similarity=0.040  Sum_probs=27.5

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR   50 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~   50 (217)
                      .+++-|.+|...-||+|....+.|.++.++|.. .++.+.
T Consensus        22 gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~-~~~~~i   60 (140)
T cd02971          22 GKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAK-GGAEVL   60 (140)
T ss_pred             CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH-CCCEEE
Confidence            334444444488899999999999999888752 345554

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=81.60  E-value=1.7  Score=26.91  Aligned_cols=20  Identities=40%  Similarity=0.775  Sum_probs=16.9

Q ss_pred             EEEEecccCchhhhhHHHHH
Q 027910           16 IDVSSDTVCPWCFVGKRNLD   35 (217)
Q Consensus        16 i~~y~D~~CP~cy~~~~~l~   35 (217)
                      |.+|+...||+|..+...|.
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~   21 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLE   21 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHH
Confidence            67899999999999777664

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=80.93  E-value=29  Score=28.29  Aligned_cols=92  Identities=16%  Similarity=0.181  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHH----hhcCCCCCC---HHHHHHHHHHcCCCccccccc---CcccchhHHHHHHHHHhCCCCeecEEEE
Q 027910          124 QHNLAEELFLGY----FTQGKYIGD---KEFLVECARKVGVEGAAEFLD---DPNSGLNEVHEELKKYSANISGVPHFVL  193 (217)
Q Consensus       124 ~~~~~~al~~a~----~~~g~~i~~---~~~L~~ia~~~Gld~~~~~l~---~~~~~~~~~~~~~~a~~~gv~g~Pt~vv  193 (217)
                      ....+..|.+.+    |-++.+.-+   ..+|..++++.|++.-.+.++   .++.... .-|...+..+||.-||++++
T Consensus       134 ~~~~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~-~~d~gqa~~l~v~~~PAl~L  212 (248)
T PRK13703        134 QRQAIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDS-RTDQGQAQRLGVKYFPALML  212 (248)
T ss_pred             HHHHHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCC-ccChhHHHhcCCcccceEEE
Confidence            566677776664    445655333   478889999999976544332   2333322 34556678999999999977


Q ss_pred             -C---Cee-ee-cCCCCHHHHHHHHHHHh
Q 027910          194 -N---GKH-EL-SGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       194 -~---g~~-~~-~G~~~~~~l~~~i~~~~  216 (217)
                       +   +++ .| .|..+.++|.+.|..++
T Consensus       213 v~~~t~~~~pv~~G~iS~deL~~Ri~~v~  241 (248)
T PRK13703        213 VDPKSGSVRPLSYGFITQDDLAKRFLNVS  241 (248)
T ss_pred             EECCCCcEEEEeeccCCHHHHHHHHHHHH
Confidence             2   343 33 69999999999888664

>PTZ00256 glutathione peroxidase; Provisional

Probab=80.71  E-value=23  Score=27.06  Aligned_cols=37  Identities=19%  Similarity=0.042  Sum_probs=27.9

Q ss_pred             ceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910           13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR   50 (217)
Q Consensus        13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~   50 (217)
                      ++.|.+++---||.|..-.+.|.++.++|.+ .++.|.
T Consensus        42 ~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~-~gv~vv   78 (183)
T PTZ00256         42 KAIIVVNVACKCGLTSDHYTQLVELYKQYKS-QGLEIL   78 (183)
T ss_pred             cEEEEEEECCCCCchHHHHHHHHHHHHHHhh-CCcEEE
Confidence            3455666788899999999999999998864 345553

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=80.65  E-value=7.1  Score=28.10  Aligned_cols=35  Identities=14%  Similarity=0.009  Sum_probs=21.0

Q ss_pred             hCCCCeecEEEE---CCeeee-cC---------CCCHHHHHHHHHHHh
Q 027910          182 SANISGVPHFVL---NGKHEL-SG---------GQPPEVYLRAFQVAA  216 (217)
Q Consensus       182 ~~gv~g~Pt~vv---~g~~~~-~G---------~~~~~~l~~~i~~~~  216 (217)
                      ..|+.|+||++|   +|+.+. .|         ..+.-.+...|++.|
T Consensus        75 ~~~~~G~Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (124)
T cd02955          75 MTGQGGWPLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIRELW  122 (124)
T ss_pred             hcCCCCCCEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHHHHH
Confidence            458999999988   465221 12         135555556665554

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=80.14  E-value=2.5  Score=27.97  Aligned_cols=35  Identities=23%  Similarity=0.292  Sum_probs=24.1

Q ss_pred             HHHHHHhCCCCeecEEEE--CC-e--eeecCCCCHHHHHH
Q 027910          176 EELKKYSANISGVPHFVL--NG-K--HELSGGQPPEVYLR  210 (217)
Q Consensus       176 ~~~~a~~~gv~g~Pt~vv--~g-~--~~~~G~~~~~~l~~  210 (217)
                      +.......||.++||+++  +| +  ..+.|..+.+.+.+
T Consensus        60 ~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~g~~~~~~i~~   99 (101)
T cd02961          60 NNDLCSEYGVRGYPTIKLFPNGSKEPVKYEGPRTLESLVE   99 (101)
T ss_pred             hHHHHHhCCCCCCCEEEEEcCCCcccccCCCCcCHHHHHh
Confidence            456678899999999977  33 2  22457666776654

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	217
3gl5_A	239	Crystal Structure Of Probable Dsba Oxidoreductase S		3e-18

>pdb|3GL5|A Chain A, Crystal Structure Of Probable Dsba Oxidoreductase Sco1869 From Streptomyces Coelicolor Length = 239

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 102/215 (47%), Gaps = 21/215 (9%)
Query: 15  RIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKK-DFYEN 73
           R+++ SD  CPWC+VGK   +KA+A+   +   E+    F L+P   K+ V         
Sbjct: 4   RVEIWSDIACPWCYVGKARFEKALAAFPHRDGVEVVHRSFELDPGRAKDDVQPVLTXLTA 63
Query: 74  KFG-SQNQGIIARMTEVFRGLGLEYNMSGLT--------GNTLDSHRLLYLAGQQGLDKQ 124
           K+G SQ Q            LG +    GL         G+T D HRLL+LA ++G  + 
Sbjct: 64  KYGXSQEQAQAGEDN-----LGAQAAAEGLAYRTRDRDHGSTFDLHRLLHLAKERG--RH 116
Query: 125 HNLAEELFLGYFTQGKYI-GDKEFLVECARKVGV--EGAAEFLDDPNSGLNEVH-EELKK 180
             L +  + G F   + +  D E LVE A   G+  E     L DP +  +EV  +E + 
Sbjct: 117 EALLDAFYRGNFADERSVFNDDERLVELAVGAGLDAEEVRAVLADPAAYADEVRADEREA 176
Query: 181 YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVA 215
                +GVP FVL+  + +SG QP EV+ +A   A
Sbjct: 177 AQLGATGVPFFVLDRAYGVSGAQPAEVFTQALTQA 211

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	217
3gl5_A	239	Putative DSBA oxidoreductase SCO1869; probable DSB	4e-51
3kzq_A	208	Putative uncharacterized protein VP2116; protein w	4e-39
2in3_A	216	Hypothetical protein; DSBA family, FRNE-like subfa	6e-37
3fz5_A	202	Possible 2-hydroxychromene-2-carboxylate isomeras;	2e-14
1r4w_A	226	Glutathione S-transferase, mitochondrial; glutathi	1e-12
2imf_A	203	HCCA isomerase, 2-hydroxychromene-2-carboxylate is	3e-11
3rpp_A	234	Glutathione S-transferase kappa 1; glutathione tra	5e-11
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	6e-06
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	8e-06
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	2e-04
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	3e-04

>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3} Length = 239

 Score =  164 bits (416), Expect = 4e-51
 Identities = 63/212 (29%), Positives = 100/212 (47%), Gaps = 11/212 (5%)

Query: 14  IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGV-NKKDFYE 72
           +R+++ SD  CPWC+VGK   +KA+A+   +   E+    F L+P   K+ V        
Sbjct: 3   MRVEIWSDIACPWCYVGKARFEKALAAFPHRDGVEVVHRSFELDPGRAKDDVQPVLTMLT 62

Query: 73  NKFGS---QNQGIIARMTEVFRGLGLEYNMSGLTG-NTLDSHRLLYLAGQQGLDKQHNLA 128
            K+G    Q Q     +       GL Y        +T D HRLL+LA ++   +   L 
Sbjct: 63  AKYGMSQEQAQAGEDNLGAQAAAEGLAYRTRDRDHGSTFDLHRLLHLAKER--GRHEALL 120

Query: 129 EELFLGYFTQGKYI-GDKEFLVECARKVGVEGAA--EFLDDPNSGLNEVHEELKKYSA-N 184
           +  + G F   + +  D E LVE A   G++       L DP +  +EV  + ++ +   
Sbjct: 121 DAFYRGNFADERSVFNDDERLVELAVGAGLDAEEVRAVLADPAAYADEVRADEREAAQLG 180

Query: 185 ISGVPHFVLNGKHELSGGQPPEVYLRAFQVAA 216
            +GVP FVL+  + +SG QP EV+ +A   A 
Sbjct: 181 ATGVPFFVLDRAYGVSGAQPAEVFTQALTQAW 212

>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus} Length = 208

 Score =  133 bits (335), Expect = 4e-39
 Identities = 30/212 (14%), Positives = 65/212 (30%), Gaps = 27/212 (12%)

Query: 14  IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYEN 73
           I++    D +C WC+  K  ++K           +  +    L P               
Sbjct: 3   IKLYYVHDPMCSWCWGYKPTIEKLKQQLPGV--IQFEYVVGGLAPDTN----------LP 50

Query: 74  KFGSQNQGIIARMTEVFRGLGLEYNMSGL-----TGNTLDSHRLLYLAGQQGLDKQHNLA 128
                 Q +     ++   LG ++N           +T  S R +  AG Q       + 
Sbjct: 51  MPPEMQQKLEGIWKQIETQLGTKFNYDFWKLCTPVRSTYQSCRAVIAAGFQD--SYEQML 108

Query: 129 EELFLGYFTQGKYIGDKEFLVECARKVGVEGAA--EFLDDPNSGLNEVHEELKKYSA-NI 185
           E +   Y+ +     ++   ++ A+++G+        +D          ++L    +  +
Sbjct: 109 EAIQHAYYLRAMPPHEEATHLQLAKEIGLNVQQFKNDMDGTL-LEGVFQDQLSLAKSLGV 167

Query: 186 SGVPHFVLNGKHEL----SGGQPPEVYLRAFQ 213
           +  P  VL                E  L+  +
Sbjct: 168 NSYPSLVLQINDAYFPIEVDYLSTEPTLKLIR 199

>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea} Length = 216

 Score =  127 bits (320), Expect = 6e-37
 Identities = 27/212 (12%), Positives = 60/212 (28%), Gaps = 25/212 (11%)

Query: 14  IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYEN 73
             +   +D +C WC+     ++             ++  P  L P      + +K     
Sbjct: 8   PVLWYIADPMCSWCWGFAPVIENIRQEYSAF--LTVKIMPGGLRPGTNTPLLPEKRAQ-- 63

Query: 74  KFGSQNQGIIARMTEVFRGLGLEYNMSGLTG-----NTLDSHRLLYLAGQQGLDKQHNLA 128
                   I+     V    G  +            +T  + R +        +K     
Sbjct: 64  --------ILHHWHSVHITTGQPFTFENALPEGFIYDTEPACRGVVSVSLIEPEKVFPFF 115

Query: 129 EELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPNSG--LNEVHEELKKYSA-NI 185
             +   ++   + +     L + A  +G+   + F     S           ++ +   I
Sbjct: 116 AAIQRAFYVGQEDVAQLAILKKLAVDLGIP-ESRFTPVFQSDEAKQRTLAGFQRVAQWGI 174

Query: 186 SGVPHFVLNGKHE----LSGGQPPEVYLRAFQ 213
           SG P  V+    +     +G +P E   +   
Sbjct: 175 SGFPALVVESGTDRYLITTGYRPIEALRQLLD 206

>3fz5_A Possible 2-hydroxychromene-2-carboxylate isomeras; 2-hydroxychromene-2-carboxylate ISO structural genomics, PSI-2; HET: MSE GSH PGE; 2.40A {Rhodobacter sphaeroides 2} Length = 202

 Score = 68.1 bits (167), Expect = 2e-14
 Identities = 30/192 (15%), Positives = 57/192 (29%), Gaps = 37/192 (19%)

Query: 21  DTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFL-------NPSAPKEGVNKKDFYEN 73
           D    + F   + ++        +    + W P+ L                 K+D+   
Sbjct: 12  DFSSGYAFFAAQRIEAL----AAELGRTVLWRPYMLGAAFSVTGARGLSSTPLKRDY--- 64

Query: 74  KFGSQNQGIIARMTEVFR---GLGLEYNM-SGLTGNTLDSHRLLYLAGQQGLDKQHNLAE 129
                         +  R     GL +   +      L + R  Y    Q  D     A+
Sbjct: 65  -----------AQRDWARIARQRGLTFRPPADHPHVALAATRAFYWIEAQSPDAATAFAQ 113

Query: 130 ELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKK-----YSAN 184
            +F  YF+        E +     +VG+E     L         + E ++K      +  
Sbjct: 114 RVFDLYFSDRLDTASPEAVSRLGPEVGLE-PEALLAGIADP--ALKETVRKIGEDAVARG 170

Query: 185 ISGVPHFVLNGK 196
           I G P F+++ +
Sbjct: 171 IFGSPFFLVDDE 182

>1r4w_A Glutathione S-transferase, mitochondrial; glutathione transferase, kappa GST, RGSTK1-1; HET: GSH; 2.50A {Rattus norvegicus} SCOP: c.47.1.13 Length = 226

 Score = 63.7 bits (155), Expect = 1e-12
 Identities = 27/194 (13%), Positives = 72/194 (37%), Gaps = 29/194 (14%)

Query: 21  DTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFL-------NPSAPKEGVNKKDF--Y 71
           D + P+ ++G     + +   +  ++ +++  P  L           P    +K  +   
Sbjct: 13  DVLSPYSWLGF----EVLCRYQHLWNIKLKLRPALLAGIMKDSGNQPPAMVPHKGQYILK 68

Query: 72  ENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEEL 131
           E     Q   +   + + F G         +   T+++ R L     +  +    ++ EL
Sbjct: 69  EIPLLKQLFQVPMSVPKDFFG-------EHVKKGTVNAMRFLTAVSMEQPEMLEKVSREL 121

Query: 132 FLGYFTQGKYIGDKEFLVECARKVGVEG--AAEFLDDPNSGLNEVHEELKK-----YSAN 184
           ++  +++ + I + + ++  A K G+    A   L+  ++    V  +L++         
Sbjct: 122 WMRIWSRDEDITESQNILSAAEKAGMATAQAQHLLNKIST--ELVKSKLRETTGAACKYG 179

Query: 185 ISGVPHFVLNGKHE 198
             G+P  V +   +
Sbjct: 180 AFGLPTTVAHVDGK 193

>2imf_A HCCA isomerase, 2-hydroxychromene-2-carboxylate isomerase; glutathione, KGST, kappa GST, transferase; HET: GSH TOM CXS; 1.30A {Pseudomonas putida} PDB: 2ime_A* 2imd_A* Length = 203

 Score = 59.7 bits (145), Expect = 3e-11
 Identities = 25/190 (13%), Positives = 51/190 (26%), Gaps = 35/190 (18%)

Query: 21  DTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFL-------NPSAPKEGVNK-KDFYE 72
           D + P+ ++  + L K        Y   IR++   L           P     K K  Y 
Sbjct: 8   DFLSPFSYLANQRLSKL----AQDYGLTIRYNAIDLARVKIAIGNVGPSNRDLKVKLDYL 63

Query: 73  NKFGSQNQGIIARMTEVFRGLGLEYNM-SGLTGNTLDSHRLLYLAGQQGLDKQHNLAEEL 131
                     + R     +  G+     +      ++              +       +
Sbjct: 64  KVD-------LQRWA---QLYGIPLVFPANYNSRRMNIGFYYS----GAEAQAAAYVNVV 109

Query: 132 FLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKK-----YSANIS 186
           F   + +G     +      + K+G +  + F    +S      E   +         + 
Sbjct: 110 FNAVWGEGIAPDLESLPALVSEKLGWD-RSAFEHFLSSN--AATERYDEQTHAAIERKVF 166

Query: 187 GVPHFVLNGK 196
           GVP   L  +
Sbjct: 167 GVPTMFLGDE 176

>3rpp_A Glutathione S-transferase kappa 1; glutathione transferase, kappa GST, TRX domain, GSH binding, detoxification, APO form; 1.80A {Homo sapiens} PDB: 3rpn_A 1yzx_A* Length = 234

 Score = 59.4 bits (144), Expect = 5e-11
 Identities = 26/198 (13%), Positives = 68/198 (34%), Gaps = 37/198 (18%)

Query: 21  DTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFL-------NPSAPKEGVNKKDFYEN 73
           D + P+ ++G     + +   ++ ++  ++  P  +           P     K  +  N
Sbjct: 13  DVLSPYSWLGF----EILCRYQNIWNINLQLRPSLITGIMKDSGNKPPGLLPRKGLYMAN 68

Query: 74  KFGSQNQGIIARMTEVFRGLGLEYNM------SGLTGNTLDSHRLLYLAGQQGLDKQHNL 127
                    +  +        +  +         L   +L + R L     +  +     
Sbjct: 69  D--------LKLLRHHL---QIPIHFPKDFLSVMLEKGSLSAMRFLTAVNLEHPEMLEKA 117

Query: 128 AEELFLGYFTQGKYIGDKEFLVECARKVGV--EGAAEFLDDPNSGLNEVHEELKK----- 180
           + EL++  +++ + I + + ++  A K G+  E A   L+   +   +V  +LK+     
Sbjct: 118 SRELWMRVWSRNEDITEPQSILAAAEKAGMSAEQAQGLLEKIAT--PKVKNQLKETTEAA 175

Query: 181 YSANISGVPHFVLNGKHE 198
                 G+P  V +   +
Sbjct: 176 CRYGAFGLPITVAHVDGQ 193

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A Length = 193

 Score = 44.4 bits (104), Expect = 6e-06
 Identities = 19/117 (16%), Positives = 31/117 (26%), Gaps = 7/117 (5%)

Query: 95  LEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARK 154
           L           L   RL         D +      +F     Q   + + E L +   +
Sbjct: 59  LRTEHVVWQKEMLTLARLAAAVDMAAADSKDVANSHIFDAMVNQKIKLQNPEVLKKWLGE 118

Query: 155 VGVEGAAEFLDDPNSGLNEVHEELKKYSA-----NISGVPHFVLNGKHELSGGQPPE 206
                  + L    S   E      K         I GVP  ++ GK+++       
Sbjct: 119 QTAFDGKKVLAAYES--PESQARADKMQELTETFQIDGVPTVIVGGKYKVEFADWES 173

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis} Length = 195

 Score = 43.8 bits (103), Expect = 8e-06
 Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 11/112 (9%)

Query: 109 SHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPN 168
             +L Y          H    ++F    T+ K + DK+ + E A   GV+  A+F    +
Sbjct: 74  LQQLYYTLQALERPDLH---PKVFTAIHTERKRLFDKKAMGEWAASQGVD-RAKFDSVFD 129

Query: 169 SGLNEVHEELKKYSA-----NISGVPHFVLNGKHELSGGQPPEVYLRAFQVA 215
           S    V  ++++ S      +I G P F + G++  S       Y  A +V 
Sbjct: 130 SF--SVQTQVQRASQLAEAAHIDGTPAFAVGGRYMTSPVLAGNDYAGALKVV 179

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} Length = 189

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 9/96 (9%), Positives = 27/96 (28%), Gaps = 8/96 (8%)

Query: 114 YLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPNSGLNE 173
             A    + +   + +  F     + +     +         G+    E+     S    
Sbjct: 70  AWALAMVMKETDVIEKAFFTAGMVEKRLHSPDDVRRVFMSATGISRG-EYDRSIKSP--A 126

Query: 174 VHEELKKY-----SANISGVPHFVLNGKHELSGGQP 204
           V++ +           + G P   + G++ ++    
Sbjct: 127 VNDMVALQERLFKEYGVRGTPSVYVRGRYHINNAAF 162

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A Length = 195

 Score = 39.4 bits (91), Expect = 3e-04
 Identities = 17/121 (14%), Positives = 33/121 (27%), Gaps = 9/121 (7%)

Query: 95  LEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARK 154
           L           L   R+       GL  Q N    +F   + Q   + ++    + A  
Sbjct: 57  LRTEHVVWQPEMLGLARMAAAVNLSGLKYQAN--PAVFKAVYEQKIRLENRSVAGKWALS 114

Query: 155 VGVEGAAEFLDDPNSGLNEVHEELKKYSA-----NISGVPHFVLNGKHELSGGQPPEVYL 209
                  + +   +S   E      K         I   P  ++ GK+ +      +  +
Sbjct: 115 QKGFDGKKLMRAYDSP--EAAAAALKMQKLTEQYRIDSTPTVIVGGKYRVIFNNGFDGGV 172

Query: 210 R 210
            
Sbjct: 173 H 173

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	217
3gl5_A	239	Putative DSBA oxidoreductase SCO1869; probable DSB	100.0
3fz5_A	202	Possible 2-hydroxychromene-2-carboxylate isomeras;	100.0
3rpp_A	234	Glutathione S-transferase kappa 1; glutathione tra	100.0
2imf_A	203	HCCA isomerase, 2-hydroxychromene-2-carboxylate is	100.0
3kzq_A	208	Putative uncharacterized protein VP2116; protein w	100.0
1r4w_A	226	Glutathione S-transferase, mitochondrial; glutathi	100.0
2in3_A	216	Hypothetical protein; DSBA family, FRNE-like subfa	100.0
3bci_A	186	Disulfide bond protein A; thiol-disulfide oxidored	100.0
3gha_A	202	Disulfide bond formation protein D; BDBD, DSBA-lik	99.97
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	99.97
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	99.97
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	99.96
3gn3_A	182	Putative protein-disulfide isomerase; MCSG, PSI, s	99.96
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	99.96
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	99.96
3l9s_A	191	Thiol:disulfide interchange protein; thioredoxin-f	99.95
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	99.95
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	99.95
3f4s_A	226	Alpha-DSBA1, putative uncharacterized protein; thi	99.95
3gmf_A	205	Protein-disulfide isomerase; oxidoreductase, PSI-2	99.95
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	99.95
3c7m_A	195	Thiol:disulfide interchange protein DSBA-like; red	99.95
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	99.95
1z6m_A	175	Conserved hypothetical protein; structural genomic	99.91
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	99.72
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	99.67
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	99.52
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	99.41
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	99.11
3tdg_A	273	DSBG, putative uncharacterized protein; thioredoxi	99.04
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	98.73
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	98.42
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	98.33
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	98.14
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	98.04
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	98.0
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	97.97
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	97.96
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	97.94
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	97.94
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	97.89
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	97.87
3raz_A	151	Thioredoxin-related protein; structural genomics,	97.84
2l57_A	126	Uncharacterized protein; structural genomics, unkn	97.83
4evm_A	138	Thioredoxin family protein; structural genomics, n	97.83
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	97.82
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	97.82
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	97.78
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	97.76
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	97.73
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	97.72
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	97.69
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	97.68
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	97.67
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	97.62
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	97.59
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	97.58
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	97.55
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	97.54
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	97.53
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	97.53
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	97.53
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	97.52
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	97.49
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	97.49
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	97.48
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	97.47
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	97.47
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	97.43
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	97.42
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	97.41
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	97.38
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	97.37
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	97.37
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	97.35
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	97.35
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	97.34
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	97.33
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	97.32
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	97.31
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	97.31
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	97.3
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	97.28
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	97.27
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	97.26
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	97.23
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	97.22
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	97.2
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	97.19
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	97.17
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	97.13
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	97.13
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	97.11
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	97.1
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	97.09
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	97.02
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	97.02
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	97.01
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	97.0
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	96.99
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	96.97
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	96.95
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	96.91
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	96.91
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	96.88
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	96.84
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	96.83
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	96.77
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	96.67
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	96.67
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	96.65
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	96.62
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	96.55
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	96.44
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	96.36
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	96.25
3ktb_A	106	Arsenical resistance operon trans-acting represso;	96.21
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	96.17
2qsi_A	137	Putative hydrogenase expression/formation protein;	96.16
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	96.12
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	96.1
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	96.06
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	96.04
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	96.04
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	95.94
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	95.94
3kgk_A	110	Arsenical resistance operon trans-acting represso;	95.88
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	95.88
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	95.87
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	95.87
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	95.83
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	95.78
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	95.58
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	95.53
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	95.52
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	95.45
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	95.35
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	95.29
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	95.07
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	95.03
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	95.01
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	95.0
2kok_A	120	Arsenate reductase; brucellosis, zoonotic, oxidore	94.99
2kuc_A	130	Putative disulphide-isomerase; structural genomics	94.9
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	94.88
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	94.84
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	94.81
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	94.79
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	94.64
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	94.64
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	94.58
3me7_A	170	Putative uncharacterized protein; electron transfe	94.58
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	94.56
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	94.53
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	94.51
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	94.47
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	94.46
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	94.46
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	94.37
1mek_A	120	Protein disulfide isomerase; electron transport, r	94.31
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	94.24
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	94.17
1ttz_A	87	Conserved hypothetical protein; structural genomic	94.16
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	94.15
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	94.01
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	93.93
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	93.86
1z3e_A	132	Regulatory protein SPX; bacterial transcription re	93.84
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	93.62
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	93.61
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	93.59
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	93.57
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	93.55
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	93.55
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	93.5
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	93.49
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	93.47
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	93.46
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	93.39
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	93.33
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	93.32
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	93.2
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	93.14
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	93.09
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	93.08
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	93.05
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	93.02
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	92.97
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	92.89
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	92.82
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	92.81
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	91.95
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	92.74
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	92.68
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	92.64
2axo_A	270	Hypothetical protein ATU2684; alpha beta protein.,	92.45
1kte_A	105	Thioltransferase; redox-active center, electron tr	92.42
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	92.35
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	92.32
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	92.32
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	92.28
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	92.27
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	92.23
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	92.22
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	92.18
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	92.14
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	92.13
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	92.09
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	92.05
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	91.25
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	91.89
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	91.82
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	91.75
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	91.71
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	91.56
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	91.51
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	91.27
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	91.11
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	91.11
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	90.87
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	90.81
2axo_A	270	Hypothetical protein ATU2684; alpha beta protein.,	90.75
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	90.69
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	90.66
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	90.63
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	90.62
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	90.54
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	90.45
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	90.25
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	90.23
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	90.14
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	89.97
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	89.94
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	89.9
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	89.86
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	89.69
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	89.68
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	89.62
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	89.17
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	89.58
2lrt_A	152	Uncharacterized protein; structural genomics, thio	89.34
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	89.31
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	89.31
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	89.21
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	89.21
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	89.15
1mek_A	120	Protein disulfide isomerase; electron transport, r	89.15
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	89.05
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	88.85
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	88.76
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	88.54
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	88.52
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	88.5
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	88.49
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	88.06
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	87.99
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	87.97
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	87.87
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	87.83
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	87.61
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	86.91
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	86.89
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	86.89
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	86.73
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	86.56
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	86.09
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	86.01
1ttz_A	87	Conserved hypothetical protein; structural genomic	85.26
1rw1_A	114	Conserved hypothetical protein YFFB; thioredoxin f	85.23
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	85.4
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	85.0
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	84.71
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	84.65
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	84.65
3l78_A	120	Regulatory protein SPX; transcription, transcripti	84.25
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	83.9
3gkx_A	120	Putative ARSC family related protein; ARSC family	83.76
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	83.74
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	83.67
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	83.66
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	83.45
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	83.28
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	83.25
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	83.0
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	82.68
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	82.66
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	82.11
3f0i_A	119	Arsenate reductase; structural genomics, IDP01300,	82.1
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	82.04
1kte_A	105	Thioltransferase; redox-active center, electron tr	81.99
2wul_A	118	Glutaredoxin related protein 5; chromosome 14 open	81.93
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	81.6
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	81.51
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	81.13
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	80.85
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	80.84
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	80.52
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	80.21
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	80.14
3rdw_A	121	Putative arsenate reductase; structural genomics,	80.1
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	80.1

>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3}

Probab=100.00  E-value=1.1e-44  Score=291.53  Aligned_cols=202  Identities=30%  Similarity=0.484  Sum_probs=187.6

Q ss_pred             ceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCC-CChHHHHHhhhCC---cHHHHHHHHHH
Q 027910           13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEG-VNKKDFYENKFGS---QNQGIIARMTE   88 (217)
Q Consensus        13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g-~~~~~~~~~~~~~---~~~~~~~~~~~   88 (217)
                      +++|++|+|+.|||||++.++|++++++|+.+.+++|+||||.|++..+..| .+..+++.+++|.   +..+++.++.+
T Consensus         2 ~~~I~~~~D~~cPwcyig~~~l~~a~~~~~~~~~v~v~~~P~~L~p~~~~~g~~~~~~~~~~k~g~~~~~~~~~~~~~~r   81 (239)
T 3gl5_A            2 HMRVEIWSDIACPWCYVGKARFEKALAAFPHRDGVEVVHRSFELDPGRAKDDVQPVLTMLTAKYGMSQEQAQAGEDNLGA   81 (239)
T ss_dssp             CEEEEEEECSSCHHHHHHHHHHHHHHHTCTTGGGEEEEEEECCSCTTCCTTCCEEHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEEEeCcCHhHHHHHHHHHHHHHhcCccCceEEEEEEeccccCCCCCCCCCHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence            6899999999999999999999999998876678999999999999987764 5666788888873   67899999999


Q ss_pred             HHHhcCCccccCC-CCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCC-HHHHHHHHHHcCCCcccc--cc
Q 027910           89 VFRGLGLEYNMSG-LTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGD-KEFLVECARKVGVEGAAE--FL  164 (217)
Q Consensus        89 ~a~~~g~~~~~~~-~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~-~~~L~~ia~~~Gld~~~~--~l  164 (217)
                      +++.+|++|+++. .+.||..+||++.+|+.+|.  .++++++||+++|.+|+++++ .++|.++++++|||.+++  .+
T Consensus        82 ~a~~~Gl~f~~~~~~~~nt~~a~r~~~~A~~~g~--~~~~~~alf~a~~~~g~~i~d~~~~L~~~a~~~Gld~~~~~~~l  159 (239)
T 3gl5_A           82 QAAAEGLAYRTRDRDHGSTFDLHRLLHLAKERGR--HEALLDAFYRGNFADERSVFNDDERLVELAVGAGLDAEEVRAVL  159 (239)
T ss_dssp             HHHHTTCCCCCSSCEECCCHHHHHHHHHHHTTTC--HHHHHHHHHHHHHTCSSCCSSCHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHcCCCccCCCCCCCChHHHHHHHHHHHhhCc--HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCHHHHHHHH
Confidence            9999999999876 46899999999999999887  999999999999999999999 999999999999999988  88


Q ss_pred             cC-cccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHHHHh
Q 027910          165 DD-PNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       165 ~~-~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~~~~  216 (217)
                      ++ +++++.++++.+.+.++||+|||||+|||+|.++|+++++.|.++|++++
T Consensus       160 ~s~~~~~~~v~~~~~~a~~~Gv~GvPtfvv~g~~~v~Ga~~~e~~~~~i~~~~  212 (239)
T 3gl5_A          160 ADPAAYADEVRADEREAAQLGATGVPFFVLDRAYGVSGAQPAEVFTQALTQAW  212 (239)
T ss_dssp             HCTTTTHHHHHHHHHHHHHTTCCSSSEEEETTTEEEESSCCHHHHHHHHHHHH
T ss_pred             cCcHhHHHHHHHHHHHHHHCCCCeeCeEEECCcEeecCCCCHHHHHHHHHHHH
Confidence            99 99999999999999999999999999999989999999999999999875

>3fz5_A Possible 2-hydroxychromene-2-carboxylate isomeras; 2-hydroxychromene-2-carboxylate ISO structural genomics, PSI-2; HET: MSE GSH PGE; 2.40A {Rhodobacter sphaeroides 2}

Probab=100.00  E-value=8.1e-43  Score=273.97  Aligned_cols=194  Identities=17%  Similarity=0.215  Sum_probs=166.8

Q ss_pred             cceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHHHHHHH
Q 027910           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFR   91 (217)
Q Consensus        12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~   91 (217)
                      +.++|++|+|+.|||||++.++|+++++++    +++|+||||.|++..+..|........    .+..+++.++.++++
T Consensus         3 ~~~~I~~~~D~~cPwcyi~~~~l~~~~~~~----~~~v~~~p~~L~~~~~~~g~~~~~~~~----~k~~~~~~~~~r~a~   74 (202)
T 3fz5_A            3 AMNPIEFWFDFSSGYAFFAAQRIEALAAEL----GRTVLWRPYMLGAAFSVTGARGLSSTP----LKRDYAQRDWARIAR   74 (202)
T ss_dssp             CCSCEEEEECTTCHHHHHHHTTHHHHHHHH----TCCEEEEECTTC----------CCSHH----HHHHHHHHHHHHHHH
T ss_pred             CCceeEEEEeCCCHHHHHHHHHHHHHHHHh----CCeEEEEeeeccchhhhcCCCCcccCc----HHHHHHHHHHHHHHH
Confidence            456899999999999999999999999854    699999999999988766543221111    267889999999999


Q ss_pred             hcCCccccCCC-CCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc--cccCcc
Q 027910           92 GLGLEYNMSGL-TGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE--FLDDPN  168 (217)
Q Consensus        92 ~~g~~~~~~~~-~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~--~l~~~~  168 (217)
                      .+|++|+++.. +.||..++|++.+|+.+|+++..+++++||+++|.+|+++++.++|.++++++|||.+++  .+++++
T Consensus        75 ~~G~~f~~~~~~~~~t~~a~r~~~~a~~~g~~~~~~~~~alf~a~~~~g~~i~~~~~L~~~a~~~Gld~~~~~~~~~s~~  154 (202)
T 3fz5_A           75 QRGLTFRPPADHPHVALAATRAFYWIEAQSPDAATAFAQRVFDLYFSDRLDTASPEAVSRLGPEVGLEPEALLAGIADPA  154 (202)
T ss_dssp             HHTCCCCCCTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCCCTTCHHHHHTTHHHHTCCHHHHHHHTTCHH
T ss_pred             HhCCCCCCCCCCCCChHHHHHHHHHHHhhCchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCHHHHHHHhcCHH
Confidence            99999998754 569999999999999998666999999999999999999999999999999999999988  899999


Q ss_pred             cchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHHH
Q 027910          169 SGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQV  214 (217)
Q Consensus       169 ~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~~  214 (217)
                      +++.++++.+.+.++||+|||||+|||+ .++|.++++.|++.|..
T Consensus       155 ~~~~v~~~~~~a~~~Gv~GvPtfvv~g~-~~~G~~~~~~l~~~l~~  199 (202)
T 3fz5_A          155 LKETVRKIGEDAVARGIFGSPFFLVDDE-PFWGWDRMEMMAEWIRT  199 (202)
T ss_dssp             HHHHHHHHHHHHHHTTCCSSSEEEETTE-EEESGGGHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHCCCCcCCEEEECCE-EEecCCCHHHHHHHHhc
Confidence            9999999999999999999999999998 78999999999999864

>3rpp_A Glutathione S-transferase kappa 1; glutathione transferase, kappa GST, TRX domain, GSH binding, detoxification, APO form; 1.80A {Homo sapiens} PDB: 3rpn_A 1yzx_A*

Probab=100.00  E-value=3e-40  Score=264.89  Aligned_cols=197  Identities=13%  Similarity=0.183  Sum_probs=166.6

Q ss_pred             cceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHHHHHHH
Q 027910           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFR   91 (217)
Q Consensus        12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~   91 (217)
                      .+++|++|+|+.|||||++.++|.++++    .++++|+|+||.|++..+..|...+.    ....+..|++.++.++++
T Consensus         4 ~~~~I~~~~D~~CPwcyi~~~~L~~~~~----~~~v~v~~~p~~L~~~~~~~g~~~~~----~~~~k~~y~~~~~~r~a~   75 (234)
T 3rpp_A            4 LPRTVELFYDVLSPYSWLGFEILCRYQN----IWNINLQLRPSLITGIMKDSGNKPPG----LLPRKGLYMANDLKLLRH   75 (234)
T ss_dssp             CCEEEEEEECTTCHHHHHHHHHHHHHTT----TSSEEEEEEECCHHHHCC----CCCS----SSCHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEEeCCCHHHHHHHHHHHHHHH----HcCCeEEEEEeecchhhhhcCCCCcc----cChHHHHHHHHHHHHHHH
Confidence            4689999999999999999999998865    45799999999998776554422110    011267889999999999


Q ss_pred             hcCCccccCCC-CC-----CcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCc---ccc
Q 027910           92 GLGLEYNMSGL-TG-----NTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEG---AAE  162 (217)
Q Consensus        92 ~~g~~~~~~~~-~~-----~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~---~~~  162 (217)
                      .+|++|+++.. +.     ||..++|++.+|+.+++++..+++++||+++|.+|+||++.++|.++++++|||.   +++
T Consensus        76 ~~G~~f~~~~~~~~~~~~~nt~~a~r~~~aa~~~~~~~~~~~~~al~~A~~~~g~di~d~~~L~~~a~~~GLd~~~~~~~  155 (234)
T 3rpp_A           76 HLQIPIHFPKDFLSVMLEKGSLSAMRFLTAVNLEHPEMLEKASRELWMRVWSRNEDITEPQSILAAAEKAGMSAEQAQGL  155 (234)
T ss_dssp             HHTCCCCCCSSCHHHHHHHCSHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHTSCCCCSSHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HhCCCCCCCCCCcccccCCCCHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence            99999998754 33     8999999999998776666999999999999999999999999999999999999   444


Q ss_pred             --cccCcccchhHHHHHHHHHhCCCCeecEEEEC--Ce-eeecCCCCHHHHHHHHHHHh
Q 027910          163 --FLDDPNSGLNEVHEELKKYSANISGVPHFVLN--GK-HELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       163 --~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~--g~-~~~~G~~~~~~l~~~i~~~~  216 (217)
                        .++|+++++.++++.+.+.++||+|||||+||  |+ +.++|.+..+.++..|.+.|
T Consensus       156 l~~~~s~~~~~~l~~~~~~a~~~Gv~GvPtfvv~~~g~~~~f~G~drl~~l~~~L~~~~  214 (234)
T 3rpp_A          156 LEKIATPKVKNQLKETTEAACRYGAFGLPITVAHVDGQTHMLFGSDRMELLAHLLGEKW  214 (234)
T ss_dssp             HTTTTSHHHHHHHHHHHHHHHHTTCSSSCEEEEEETTEEEEEESSSCHHHHHHHHTCCC
T ss_pred             HHHccCHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCCcCceeCccCHHHHHHHhcccc
Confidence              55889999999999999999999999999994  75 78999999999999997654

>2imf_A HCCA isomerase, 2-hydroxychromene-2-carboxylate isomerase; glutathione, KGST, kappa GST, transferase; HET: GSH TOM CXS; 1.30A {Pseudomonas putida} PDB: 2ime_A* 2imd_A*

Probab=100.00  E-value=8.7e-41  Score=262.44  Aligned_cols=193  Identities=13%  Similarity=0.145  Sum_probs=167.7

Q ss_pred             eEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHHHHHHHhc
Q 027910           14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGL   93 (217)
Q Consensus        14 v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   93 (217)
                      |+|++|+|+.|||||++.++|++++++|    +++|+||||.|++..+..|...+ ... ....+..++..++.++++.+
T Consensus         1 m~I~~~~D~~CP~cy~~~~~l~~~~~~~----~~~v~~~p~~L~~~~~~~g~~~~-~~~-g~~~~~~~~~~~~~~~a~~~   74 (203)
T 2imf_A            1 MIVDFYFDFLSPFSYLANQRLSKLAQDY----GLTIRYNAIDLARVKIAIGNVGP-SNR-DLKVKLDYLKVDLQRWAQLY   74 (203)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHH----CCEEEEEECCHHHHHHHHTCCSC-CGG-GCHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHHHHHHc----CCeEEEEeeecchhhHhhCCCCc-ccc-cChHHHHHHHHHHHHHHHHc
Confidence            5799999999999999999999999865    48999999988764322221110 000 00125678999999999999


Q ss_pred             CCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc--cccCcccch
Q 027910           94 GLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE--FLDDPNSGL  171 (217)
Q Consensus        94 g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~--~l~~~~~~~  171 (217)
                      |++|+++. ++||..+++++.+|+.+|.  +++++++||+++|.+|+++++.++|.++++++|||.+++  .++++++++
T Consensus        75 G~~~~~~~-~~~t~~a~r~~~~a~~~g~--~~~~~~~lf~a~~~~~~~i~~~~~L~~~a~~~Gld~~~~~~~~~s~~~~~  151 (203)
T 2imf_A           75 GIPLVFPA-NYNSRRMNIGFYYSGAEAQ--AAAYVNVVFNAVWGEGIAPDLESLPALVSEKLGWDRSAFEHFLSSNAATE  151 (203)
T ss_dssp             TCCCCCCS-CCCCHHHHHHGGGCCSHHH--HHHHHHHHHHHHHHSCCCTTCTTHHHHHHHHHTCCHHHHHHHHHSHHHHH
T ss_pred             CCCCCCCC-CCChHHHHHHHHHHhCcCh--HHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHcCCCHHHHHHHhcCHHHHH
Confidence            99999887 8899999999999988776  999999999999999999999999999999999999998  889999999


Q ss_pred             hHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHHHHh
Q 027910          172 NEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       172 ~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~~~~  216 (217)
                      .++++.+.+.++||+|||||+|||+ .++|.++++.|+++|++++
T Consensus       152 ~v~~~~~~a~~~Gv~G~Ptfvi~g~-~~~G~~~~~~l~~~l~~~~  195 (203)
T 2imf_A          152 RYDEQTHAAIERKVFGVPTMFLGDE-MWWGNDRLFMLESAMGRLC  195 (203)
T ss_dssp             HHHHHHHHHHHTTCCSSSEEEETTE-EEESGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCcCCEEEECCE-EEECCCCHHHHHHHHhccc
Confidence            9999999999999999999999998 7899999999999998764

>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}

Probab=100.00  E-value=2.7e-38  Score=249.15  Aligned_cols=189  Identities=16%  Similarity=0.159  Sum_probs=166.0

Q ss_pred             eEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHHHHHHHhc
Q 027910           14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGL   93 (217)
Q Consensus        14 v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   93 (217)
                      ++|++|+||.|||||+++++|+++.++|+.  +++|+|+|+.|.+..+.   +..+       .+..++..++.++++.+
T Consensus         3 ~~I~~~~D~~CP~cy~~~~~l~~l~~~~~~--~v~v~~~p~~L~~~~~~---~~~~-------~~~~~~~~~~~r~a~~~   70 (208)
T 3kzq_A            3 IKLYYVHDPMCSWCWGYKPTIEKLKQQLPG--VIQFEYVVGGLAPDTNL---PMPP-------EMQQKLEGIWKQIETQL   70 (208)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHSCT--TSEEEEEECCSSCSCCC---BCCH-------HHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEECCCCchhhhhhHHHHHHHHhCCC--CceEEEEecccccCCCC---CCCH-------HHHHHHHHHHHHHHHHH
Confidence            799999999999999999999999998863  79999999998765321   1111       14567888889999999


Q ss_pred             CCccccC-----CCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc--cccC
Q 027910           94 GLEYNMS-----GLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE--FLDD  166 (217)
Q Consensus        94 g~~~~~~-----~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~--~l~~  166 (217)
                      |++|+++     ..+.||..++|++.+|+.+|+  .++++++||+++|.+|+++++.++|.++++++|||.+++  .+++
T Consensus        71 G~~f~~~~~~~~~~~~~s~~a~r~~~aa~~~g~--~~~~~~~l~~a~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~s  148 (208)
T 3kzq_A           71 GTKFNYDFWKLCTPVRSTYQSCRAVIAAGFQDS--YEQMLEAIQHAYYLRAMPPHEEATHLQLAKEIGLNVQQFKNDMDG  148 (208)
T ss_dssp             CCCCCTTHHHHSCCBCCCHHHHHHHHHHHTTTC--HHHHHHHHHHHHHTSCCCTTCHHHHHHHHHHTTCCHHHHHHHHTS
T ss_pred             CCcccHHHHhcCCCcCCcHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCHHHHHHHHhC
Confidence            9999986     346899999999999999998  899999999999999999999999999999999999998  8899


Q ss_pred             cccchhHHHHHHHHHhCCCCeecEEEEC--Cee--eecCCCCHHHHHHHHHHHh
Q 027910          167 PNSGLNEVHEELKKYSANISGVPHFVLN--GKH--ELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       167 ~~~~~~~~~~~~~a~~~gv~g~Pt~vv~--g~~--~~~G~~~~~~l~~~i~~~~  216 (217)
                      +++++.+.++.+.+.++||+|||||+|+  |++  .+.|+++++.|.++|+++.
T Consensus       149 ~~~~~~v~~~~~~a~~~gv~g~Pt~~v~~~~~~~~~~~g~~~~e~~~~~i~~~~  202 (208)
T 3kzq_A          149 TLLEGVFQDQLSLAKSLGVNSYPSLVLQINDAYFPIEVDYLSTEPTLKLIRERI  202 (208)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCSSSEEEEEETTEEEEECCCSSCSHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCCcccEEEEEECCEEEEeeCCCCCHHHHHHHHHHHH
Confidence            9999999999999999999999999995  554  3479999999999998764

>1r4w_A Glutathione S-transferase, mitochondrial; glutathione transferase, kappa GST, RGSTK1-1; HET: GSH; 2.50A {Rattus norvegicus} SCOP: c.47.1.13

Probab=100.00  E-value=4.7e-39  Score=256.59  Aligned_cols=196  Identities=12%  Similarity=0.141  Sum_probs=165.0

Q ss_pred             cceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHHHHHHH
Q 027910           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFR   91 (217)
Q Consensus        12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~   91 (217)
                      .+++|++|+|+.|||||++.++|+++.+    +++++|+||||.|++..+..|... ++.   ...+..++..++.++++
T Consensus         4 m~~~I~~~~D~~CP~Cy~~~~~l~~l~~----~~~~~v~~~p~~L~~~~~~~g~~~-~~~---~~~~~~~~~~~~~r~a~   75 (226)
T 1r4w_A            4 APRVLELFYDVLSPYSWLGFEVLCRYQH----LWNIKLKLRPALLAGIMKDSGNQP-PAM---VPHKGQYILKEIPLLKQ   75 (226)
T ss_dssp             CCEEEEEEECTTCHHHHHHHHHHHHHTT----TSSEEEEEEECCHHHHHHHTTCCC-TTS---SHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEEeCCChHHHHHHHHHHHHHH----HcCCeEEEEeeecccchhccCCCC-ccc---ChHHHHHHHHHHHHHHH
Confidence            5689999999999999999999998765    457999999998876433222111 110   01256888999999999


Q ss_pred             hcCCccccCCCC------CCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCc---ccc
Q 027910           92 GLGLEYNMSGLT------GNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEG---AAE  162 (217)
Q Consensus        92 ~~g~~~~~~~~~------~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~---~~~  162 (217)
                      .+|++|+++..+      .||..+++++.+|+.+|++++++++++||+++|.+|+++++.++|.++++++|||.   +++
T Consensus        76 ~~G~~~~~~~~~~~~~~~~~s~~a~r~~~aa~~~g~~~~~~~~~alf~a~~~~~~~i~~~~~L~~~a~~~Gl~~~d~~~~  155 (226)
T 1r4w_A           76 LFQVPMSVPKDFFGEHVKKGTVNAMRFLTAVSMEQPEMLEKVSRELWMRIWSRDEDITESQNILSAAEKAGMATAQAQHL  155 (226)
T ss_dssp             HHTCCCCCCSSTTTHHHHHCSHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHTSCCCCSSHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HhCCCCCCCCccccccCCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCchhHHHH
Confidence            999999976432      48999999999999989766899999999999999999999999999999999964   455


Q ss_pred             --cccCcccchhHHHHHHHHHhCCCCeecEEEEC----CeeeecCCCCHHHHHHHHHHHh
Q 027910          163 --FLDDPNSGLNEVHEELKKYSANISGVPHFVLN----GKHELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       163 --~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~----g~~~~~G~~~~~~l~~~i~~~~  216 (217)
                        .++++++++.++++.+.+.++||+|||||+||    |+ .+.|.++++.|++.|.+.|
T Consensus       156 ~~~~~s~~~~~~v~~~~~~a~~~gv~G~Ptfvv~~~g~~~-~~~G~~~~~~l~~~l~~~~  214 (226)
T 1r4w_A          156 LNKISTELVKSKLRETTGAACKYGAFGLPTTVAHVDGKTY-MLFGSDRMELLAYLLGEKW  214 (226)
T ss_dssp             HTTTTSHHHHHHHHHHHHHHHHTTCCSSCEEEEEETTEEE-EEESTTCHHHHHHHHTCCC
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHCCCCCCCEEEEeCCCCcC-ceeCCCcHHHHHHHhcCcc
Confidence              67799999999999999999999999999999    66 7899999999999987543

>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}

Probab=100.00  E-value=2.8e-36  Score=238.37  Aligned_cols=194  Identities=13%  Similarity=0.156  Sum_probs=163.5

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHHHHHH
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVF   90 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a   90 (217)
                      |++++|++|+|+.|||||.+.+.++++.+ +. ..+++|+|+|+.+.+..+.   +...       .+..++..++.+++
T Consensus         5 m~~~~I~~f~D~~CP~C~~~~~~~~~l~~-~~-~~~v~v~~~~~~l~~~~~~---~~~~-------~~~~~~~~~~~r~a   72 (216)
T 2in3_A            5 MEKPVLWYIADPMCSWCWGFAPVIENIRQ-EY-SAFLTVKIMPGGLRPGTNT---PLLP-------EKRAQILHHWHSVH   72 (216)
T ss_dssp             -CCCEEEEEECTTCHHHHHHHHHHHHHHH-HH-TTTCEEEEEECC----CCS---BCCH-------HHHHHHHHHHHHHH
T ss_pred             ccceeEEEEECCCCchhhcchHHHHHHHh-cC-CCCeEEEEeecccccCCCC---CCCH-------HHHHHHHHHHHHHH
Confidence            55899999999999999988888887765 43 2469999999998764421   1101       14567888999999


Q ss_pred             HhcCCccccC-----CCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc--c
Q 027910           91 RGLGLEYNMS-----GLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE--F  163 (217)
Q Consensus        91 ~~~g~~~~~~-----~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~--~  163 (217)
                      +.+|++|+++     ..+++|..+++++.+|+.++++++++++++||+++|.+|+++++.++|.++++++|||.+++  +
T Consensus        73 ~~~g~~~~~~~~~~~~~~~~s~~a~r~~~~a~~~~~~~~~~~~~~lf~a~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~  152 (216)
T 2in3_A           73 ITTGQPFTFENALPEGFIYDTEPACRGVVSVSLIEPEKVFPFFAAIQRAFYVGQEDVAQLAILKKLAVDLGIPESRFTPV  152 (216)
T ss_dssp             HHHCCCCCCTTCSCTTCBCCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHTTCCCTTSHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHCCccChHHHccCCcccCcHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence            9999999863     24589999999999999885556999999999999999999999999999999999999988  8


Q ss_pred             ccCcccchhHHHHHHHHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHHh
Q 027910          164 LDDPNSGLNEVHEELKKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       164 l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~~  216 (217)
                      ++++++++.+.++.+.+.++||+|||||+|  ||++  .+.|.++++.|.++|+++.
T Consensus       153 ~~~~~~~~~v~~~~~~a~~~gv~g~Pt~~i~~~G~~~~~~~G~~~~~~l~~~l~~~~  209 (216)
T 2in3_A          153 FQSDEAKQRTLAGFQRVAQWGISGFPALVVESGTDRYLITTGYRPIEALRQLLDTWL  209 (216)
T ss_dssp             HHSHHHHHHHHHHHHHHHHTTCCSSSEEEEEETTEEEEEESSCCCHHHHHHHHHHHH
T ss_pred             hcchHHHHHHHHHHHHHHHcCCcccceEEEEECCEEEEeccCCCCHHHHHHHHHHHH
Confidence            899999999999999999999999999998  9997  6899999999999998764

>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A

Probab=100.00  E-value=4e-32  Score=210.02  Aligned_cols=167  Identities=15%  Similarity=0.133  Sum_probs=139.6

Q ss_pred             ccCcccCCcceEEEEEecccCchhhhhHHHHH-HHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHH
Q 027910            4 SVSSSAGKKLIRIDVSSDTVCPWCFVGKRNLD-KAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGI   82 (217)
Q Consensus         4 ~~~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~-~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~   82 (217)
                      +...|++..+++|++|+||.|||||.+++.+. .+.++|.+..+++++|+|+++.+                        
T Consensus         3 ~~~~G~~~a~~~i~~f~D~~Cp~C~~~~~~l~~~l~~~~~~~~~v~~~~~~~p~~~------------------------   58 (186)
T 3bci_A            3 SATTSSKNGKPLVVVYGDYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFVNLAFLG------------------------   58 (186)
T ss_dssp             --------CCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTSSEEEEEECCCSC------------------------
T ss_pred             CcCcCCCCCCeEEEEEECCCChhHHHHHHHHHHHHHHHhccCCeEEEEEEecCcCC------------------------
Confidence            45568889999999999999999999999985 55567875567999999997632                        


Q ss_pred             HHHHHHHHHhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCccc-
Q 027910           83 IARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAA-  161 (217)
Q Consensus        83 ~~~~~~~a~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~-  161 (217)
                                           ++|..+++++.++..+|++++++|+++||++.+.++.++.+.+.|.++++++|||.+. 
T Consensus        59 ---------------------~~s~~aa~a~~~a~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~  117 (186)
T 3bci_A           59 ---------------------KDSIVGSRASHAVLMYAPKSFLDFQKQLFAAQQDENKEWLTKELLDKHIKQLHLDKETE  117 (186)
T ss_dssp             ---------------------TTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCCTTSCCCCHHHHHHHHHTTCCCHHHH
T ss_pred             ---------------------cchHHHHHHHHHHHHhCHHHHHHHHHHHHhcCcccCCCCCCHHHHHHHHHHcCCCHHHH
Confidence                                 1355677888888888877799999999999998888899999999999999999998 


Q ss_pred             --c--cc--cCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHHHHh
Q 027910          162 --E--FL--DDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       162 --~--~l--~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~~~~  216 (217)
                        |  ++  +++++.+.+.++.+.+.++||+|||||+|||+ .+.|..+++.|.++|+++.
T Consensus       118 ~~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~GtPt~vvnG~-~~~G~~~~~~l~~~i~~~~  177 (186)
T 3bci_A          118 NKIIKDYKTKDSKSWKAAEKDKKIAKDNHIKTTPTAFINGE-KVEDPYDYESYEKLLKDKI  177 (186)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHHHTTCCSSSEEEETTE-ECSCTTCHHHHHHHHHC--
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCCCCeEEECCE-EcCCCCCHHHHHHHHHHHH
Confidence              8  77  88899999999999999999999999999999 5789999999999998653

>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A

Probab=99.97  E-value=4.4e-31  Score=207.09  Aligned_cols=168  Identities=13%  Similarity=0.058  Sum_probs=143.0

Q ss_pred             cccCcccCCcceEEEEEecccCchhhhhHHHHH-HHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHH
Q 027910            3 QSVSSSAGKKLIRIDVSSDTVCPWCFVGKRNLD-KAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQG   81 (217)
Q Consensus         3 ~~~~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~-~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~   81 (217)
                      .+...|++..+++|++|+||.||||+.+++.+. .+.++|.+..+|+++|+|+++.+          +            
T Consensus        20 ~~~~~G~~~a~vtvvef~D~~CP~C~~~~~~~~~~l~~~~~~~g~v~~~~~~~p~~~----------~------------   77 (202)
T 3gha_A           20 GQPVLGKDDAPVTVVEFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVNVMFHG----------K------------   77 (202)
T ss_dssp             TSCEESCTTCSEEEEEEECTTCHHHHHHHHHTHHHHHHHTTTTTSEEEEEEECCCSH----------H------------
T ss_pred             CCceecCCCCCEEEEEEECCCChhHHHHHHHhhHHHHHHhccCCeEEEEEEecCccc----------h------------
Confidence            356678899999999999999999999998874 45567875568999999998632          0            


Q ss_pred             HHHHHHHHHHhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH-cCCCcc
Q 027910           82 IIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARK-VGVEGA  160 (217)
Q Consensus        82 ~~~~~~~~a~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~-~Gld~~  160 (217)
                                             .|..+.+++.++..++++++++|+++||++++.++.++.+.+.|.+++.+ +|||.+
T Consensus        78 -----------------------~s~~Aa~aa~a~~~~~~~~f~~~~~aLf~~~~~~~~~~~~~~~L~~~a~~~~Gld~~  134 (202)
T 3gha_A           78 -----------------------GSRLAALASEEVWKEDPDSFWDFHEKLFEKQPDTEQEWVTPGLLGDLAKSTTKIKPE  134 (202)
T ss_dssp             -----------------------HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHCCSSSSCCCCHHHHHHHHHHHSSSCHH
T ss_pred             -----------------------hHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHhcCCCHH
Confidence                                   12334555555554455669999999999999999889999999999999 999999


Q ss_pred             cc--cccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHHHHh
Q 027910          161 AE--FLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       161 ~~--~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~~~~  216 (217)
                      +|  +++++++.+.+.++.+.+.++||+|||||+|||++ +.|..+++.|.++|+++.
T Consensus       135 ~~~~~l~s~~~~~~v~~~~~~a~~~gV~gtPtfvvnG~~-~~G~~~~e~l~~~i~~~~  191 (202)
T 3gha_A          135 TLKENLDKETFASQVEKDSDLNQKMNIQATPTIYVNDKV-IKNFADYDEIKETIEKEL  191 (202)
T ss_dssp             HHHHHHHHTTTHHHHHHHHHHHHHTTCCSSCEEEETTEE-CSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhChHHHHHHHHHHHHHHHcCCCcCCEEEECCEE-ecCCCCHHHHHHHHHHHH
Confidence            98  88999999999999999999999999999999995 899999999999999764

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=99.97  E-value=8.9e-30  Score=197.59  Aligned_cols=159  Identities=17%  Similarity=0.112  Sum_probs=139.2

Q ss_pred             cccC-CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHH
Q 027910            7 SSAG-KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIAR   85 (217)
Q Consensus         7 ~~~~-~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   85 (217)
                      .|++ ..+++|++|+|+.|||||.+++.+.+++++|+.  ++++++.|+.+++                           
T Consensus        19 ~g~~~~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~--~v~~~~~p~~~~~---------------------------   69 (193)
T 2rem_A           19 PFAPLAGKIEVVEIFGYTCPHCAHFDSKLQAWGARQAK--DVRFTLVPAVFGG---------------------------   69 (193)
T ss_dssp             CSSCCTTCEEEEEEECTTCHHHHHHHHHHHHHHHTSCT--TEEEEEEECCCST---------------------------
T ss_pred             CCCCCCCCeEEEEEECCCChhHhhhhHHHHHHHHhcCC--ceEEEEeCcccCC---------------------------
Confidence            4556 789999999999999999999999999988763  5777777765432                           


Q ss_pred             HHHHHHhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCC---CCCCHHHHHHHHHHcCCCcccc
Q 027910           86 MTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGK---YIGDKEFLVECARKVGVEGAAE  162 (217)
Q Consensus        86 ~~~~a~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~---~i~~~~~L~~ia~~~Gld~~~~  162 (217)
                                         ++..+++++.+|+.+|.  +++++++||+++|.++.   ++.+.+.|.+++++.|+|.+++
T Consensus        70 -------------------~s~~a~~a~~~a~~~~~--~~~~~~~lf~~~~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~  128 (193)
T 2rem_A           70 -------------------VWDPFARAYLAADVLGV--AKRSHTAMFEAIHEKGSVPIQNVGPDELAVFYAGYGVQPDRF  128 (193)
T ss_dssp             -------------------THHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTTCCSCSTTCCHHHHHHHHHTTTCCHHHH
T ss_pred             -------------------CcHHHHHHHHHHHHcCc--HHHHHHHHHHHHHHhcccCcCCCCHHHHHHHHHHcCCCHHHH
Confidence                               23456778888888887  99999999999999998   8999999999999999999988


Q ss_pred             --cccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHHHHh
Q 027910          163 --FLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       163 --~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~~~~  216 (217)
                        +++++++.+.+.++.+.+.++||+|||||+|||++.+.|. +++.|.++|+++.
T Consensus       129 ~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~ving~~~~~g~-~~~~l~~~i~~~~  183 (193)
T 2rem_A          129 VATFNGPEVEKRFQAARAYALKVRPVGTPTIVVNGRYMVTGH-DFEDTLRITDYLV  183 (193)
T ss_dssp             HHHHTSHHHHHHHHHHHHHHHHHCCSSSSEEEETTTEEECCS-SHHHHHHHHHHHH
T ss_pred             HHHHhChHHHHHHHHHHHHHHHhCCCCCCeEEECCEEEecCC-CHHHHHHHHHHHH
Confidence              8899999999999999999999999999999999777888 9999999998764

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=99.97  E-value=7.6e-30  Score=198.10  Aligned_cols=158  Identities=15%  Similarity=0.154  Sum_probs=138.0

Q ss_pred             cCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHHHH
Q 027910            9 AGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTE   88 (217)
Q Consensus         9 ~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   88 (217)
                      .+..+++|++|+|+.||||+.+++.+.++.++|+.  ++.+++.|+.+++                              
T Consensus        22 ~~~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~--~v~~~~~p~~~~~------------------------------   69 (192)
T 3h93_A           22 SQPGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPA--DVHFVRLPALFGG------------------------------   69 (192)
T ss_dssp             SSTTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCT--TEEEEEEECCCST------------------------------
T ss_pred             CCCCCCEEEEEECCCChhHHHhhHHHHHHHHhCCC--CeEEEEEehhhcc------------------------------
Confidence            34689999999999999999999999999998764  5666665654322                              


Q ss_pred             HHHhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc--cccC
Q 027910           89 VFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE--FLDD  166 (217)
Q Consensus        89 ~a~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~--~l~~  166 (217)
                                      ++..+++++.+|+.+|.  +++|+++||+++|.++.++++.+.|.++++++|||.+.+  ++++
T Consensus        70 ----------------~~~~aa~a~~aa~~~g~--~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~  131 (192)
T 3h93_A           70 ----------------IWNVHGQMFLTLESMGV--EHDVHNAVFEAIHKEHKKLATPEEMADFLAGKGVDKEKFLSTYNS  131 (192)
T ss_dssp             ----------------HHHHHHHHHHHHHHHTC--CHHHHHHHHHHHHTSCCCCCSHHHHHHHHHTTTCCHHHHHHHHTC
T ss_pred             ----------------chHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHcCCCHHHHHHHhhC
Confidence                            13345677788888887  999999999999999999999999999999999999998  8899


Q ss_pred             cccchhHHHHHHHHHhCCCCeecEEEECCeeeec--CCCCHHHHHHHHHHHh
Q 027910          167 PNSGLNEVHEELKKYSANISGVPHFVLNGKHELS--GGQPPEVYLRAFQVAA  216 (217)
Q Consensus       167 ~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~--G~~~~~~l~~~i~~~~  216 (217)
                      +++.+.+.++.+.+.++||+|||||+|||++.+.  |+.+++.|.++|+.+.
T Consensus       132 ~~~~~~v~~~~~~a~~~gv~gtPt~~vng~~~~~~~G~~~~e~l~~~i~~l~  183 (192)
T 3h93_A          132 FAIKGQMEKAKKLAMAYQVTGVPTMVVNGKYRFDIGSAGGPEETLKLADYLI  183 (192)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCSSSEEEETTTEEEEHHHHTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCeEEECCEEEecccccCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999997766  9999999999998764

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=99.96  E-value=6.6e-29  Score=193.04  Aligned_cols=161  Identities=14%  Similarity=0.126  Sum_probs=137.6

Q ss_pred             CcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHH
Q 027910            6 SSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIAR   85 (217)
Q Consensus         6 ~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   85 (217)
                      ..|++..+++|++|+|+.||||+.+++.|.++.++++.  ++.+++.|+.+++                           
T Consensus        16 ~~g~~~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~--~v~~~~~p~~~~~---------------------------   66 (195)
T 2znm_A           16 IPQEQSGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPS--DAYLRTEHVVWQP---------------------------   66 (195)
T ss_dssp             CCCSSSSSEEEEEEECTTSCCTTSSCHHHHHHHHHSCT--TEEEEEEECCCSG---------------------------
T ss_pred             CCCCCCCCcEEEEEECCCChhHHHHhHHHHHHHHHCCC--ceEEEEeccccCc---------------------------
Confidence            45667889999999999999999999999999988753  4444444443211                           


Q ss_pred             HHHHHHhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHc-CCCcccc--
Q 027910           86 MTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKV-GVEGAAE--  162 (217)
Q Consensus        86 ~~~~a~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~-Gld~~~~--  162 (217)
                                         +|..+++++.+|+.+|.  +++++++||+++|.++.++.+.+.|.+++++. |+|.+.+  
T Consensus        67 -------------------~s~~aa~a~~aa~~~~~--~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~~Gld~~~~~~  125 (195)
T 2znm_A           67 -------------------EMLGLARMAAAVNLSGL--KYQANPAVFKAVYEQKIRLENRSVAGKWALSQKGFDGKKLMR  125 (195)
T ss_dssp             -------------------GGHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCSSCTTSHHHHHHHHHTCSSSCHHHHHH
T ss_pred             -------------------ccHHHHHHHHHHHHcCc--HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCHHHHHH
Confidence                               24456678888888887  99999999999999999999999999999999 9999988  


Q ss_pred             cccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHHHHh
Q 027910          163 FLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       163 ~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~~~~  216 (217)
                      +++++++...+.++.+.+.++||+|||||+|||++.+.|..+++.|.++|+++.
T Consensus       126 ~~~~~~~~~~v~~~~~~a~~~gv~gtPt~ving~~~~~g~~~~~~l~~~i~~~l  179 (195)
T 2znm_A          126 AYDSPEAAAAALKMQKLTEQYRIDSTPTVIVGGKYRVIFNNGFDGGVHTIKELV  179 (195)
T ss_dssp             HHTSHHHHHHHHHHHHHHHHTTCCSSSEEEETTTEEECCCSHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHHHHcCCCCCCeEEECCEEEEcCCCCHHHHHHHHHHHH
Confidence            889999999999999999999999999999999977899888999999888653

>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}

Probab=99.96  E-value=5.4e-29  Score=192.04  Aligned_cols=156  Identities=14%  Similarity=0.139  Sum_probs=133.2

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHHHHHH
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVF   90 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a   90 (217)
                      ..+++|++|+||.||||..+++.+.++++++ ...+|+++||+|++.. .                              
T Consensus        13 ~a~vtiv~f~D~~Cp~C~~~~~~~~~~l~~~-~~g~v~~v~r~~p~~~-h------------------------------   60 (182)
T 3gn3_A           13 HGPRLFEVFLEPTCPFSVKAFFKLDDLLAQA-GEDNVTVRIRLQSQPW-H------------------------------   60 (182)
T ss_dssp             CCSEEEEEEECTTCHHHHHHHTTHHHHHHHH-CTTTEEEEEEECCCTT-S------------------------------
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHHHh-CCCCEEEEEEEcCCCC-C------------------------------
Confidence            6899999999999999999999999988876 2347999999998621 1                              


Q ss_pred             HhcCCccccCCCCCCcHHHHHHHHHHhhcCC--chHHHHHHHHHHHH--h--h-----cCCCCCCHHHHHHHHHHcCCCc
Q 027910           91 RGLGLEYNMSGLTGNTLDSHRLLYLAGQQGL--DKQHNLAEELFLGY--F--T-----QGKYIGDKEFLVECARKVGVEG  159 (217)
Q Consensus        91 ~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~--~~~~~~~~al~~a~--~--~-----~g~~i~~~~~L~~ia~~~Gld~  159 (217)
                                   ++|..+++++.+|..+++  +++++|+++||+..  |  .     ..+++++.++|.++++.+|||.
T Consensus        61 -------------~~s~~aaraa~aa~~~~~~~~~f~~~~~aLf~~q~~~~~~~~~~~~~~~~~~~~~l~~~a~~~Gld~  127 (182)
T 3gn3_A           61 -------------MFSGVIVRCILAAATLEGGKESAKAVMTAVASHREEFEFEHHAGGPNLDATPNDIIARIERYSGLAL  127 (182)
T ss_dssp             -------------TTHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHTGGGGSCBTTTBSGGGGCCHHHHHHHHHHHHTCCC
T ss_pred             -------------ccHHHHHHHHHHHHHhccChHHHHHHHHHHHhcCcccccccccccccCCCCHHHHHHHHHHHhCCCH
Confidence                         235567788888877744  67999999999985  4  2     3478888999999999999999


Q ss_pred             ccccccCcccchhHHHHHHHHHhCCCCeecEEEECCeee--ecCCCCHHHHHHHH
Q 027910          160 AAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHE--LSGGQPPEVYLRAF  212 (217)
Q Consensus       160 ~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~--~~G~~~~~~l~~~i  212 (217)
                      +++ ++++++.+.++.+.+.++++||+|||||+|||++.  ++|.+++++|.++|
T Consensus       128 ~~~-l~~~~~~~~v~~~~~~a~~~GV~gtPtf~ing~~~~~~s~~~~~e~w~~~l  181 (182)
T 3gn3_A          128 AEA-FANPELEHAVKWHTKYARQNGIHVSPTFMINGLVQPGMSSGDPVSKWVSDI  181 (182)
T ss_dssp             HHH-HHCGGGHHHHHHHHHHHHHHTCCSSSEEEETTEECTTCCTTSCHHHHHHHH
T ss_pred             HHH-hcChHHHHHHHHHHHHHHHCCCCccCEEEECCEEccCCCCCCCHHHHHHHh
Confidence            987 78899999999999999999999999999999964  68999999999887

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=99.96  E-value=2.2e-28  Score=190.35  Aligned_cols=156  Identities=17%  Similarity=0.156  Sum_probs=132.8

Q ss_pred             CCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHHHHH
Q 027910           10 GKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEV   89 (217)
Q Consensus        10 ~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   89 (217)
                      ...+++|++|+|+.||+|+.+++.+.++.++|++  ++  +|+.+++...                              
T Consensus        22 ~~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~--~v--~~~~~p~~~~------------------------------   67 (193)
T 3hz8_A           22 QAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKD--DM--YLRTEHVVWQ------------------------------   67 (193)
T ss_dssp             STTSEEEEEEECTTCHHHHHHHHHHHHHHTTCCT--TE--EEEEEECCCS------------------------------
T ss_pred             CCCCcEEEEEECCCChhHHHHHHHHHHHHHHCCC--Ce--EEEEecCCCC------------------------------
Confidence            4479999999999999999999999999887764  34  4555543210                              


Q ss_pred             HHhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHc-CCCcccc--cc
Q 027910           90 FRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHN--LAEELFLGYFTQGKYIGDKEFLVECARKV-GVEGAAE--FL  164 (217)
Q Consensus        90 a~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~--~~~al~~a~~~~g~~i~~~~~L~~ia~~~-Gld~~~~--~l  164 (217)
                                    .++..+.+++.+|+.+|.  .++  ++++||+++|.++.++.+.+.|.+++.++ |||.++|  ++
T Consensus        68 --------------~~~~~aa~a~~aa~~~g~--~~~~~~~~~lf~a~~~~~~~~~~~~~l~~~a~~~~Gld~~~~~~~~  131 (193)
T 3hz8_A           68 --------------KEMLTLARLAAAVDMAAA--DSKDVANSHIFDAMVNQKIKLQNPEVLKKWLGEQTAFDGKKVLAAY  131 (193)
T ss_dssp             --------------GGGHHHHHHHHHHHHHTG--GGHHHHHHHHHHHHHTSCCCTTSHHHHHHHHHHCTTTTHHHHHHHH
T ss_pred             --------------cccHHHHHHHHHHHHcCc--hhHHhHHHHHHHHHHHhCcCCCCHHHHHHHHHHccCCCHHHHHHHH
Confidence                          113446678888888887  677  99999999999999999999999999999 9999998  88


Q ss_pred             cCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHHHHh
Q 027910          165 DDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       165 ~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~~~~  216 (217)
                      +++++.+.++++.+.+.++||+|||||+|||++.+.|. +++.|.++|+.+.
T Consensus       132 ~s~~~~~~v~~~~~~a~~~gv~gtPt~vvng~~~~~~~-~~e~l~~~i~~ll  182 (193)
T 3hz8_A          132 ESPESQARADKMQELTETFQIDGVPTVIVGGKYKVEFA-DWESGMNTIDLLA  182 (193)
T ss_dssp             HSHHHHHHHHHHHHHHHHTTCCSSSEEEETTTEEECCS-SHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHhCCCcCCEEEECCEEEecCC-CHHHHHHHHHHHH
Confidence            99999999999999999999999999999999776676 9999999988754

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=99.96  E-value=2.6e-28  Score=187.45  Aligned_cols=163  Identities=10%  Similarity=0.048  Sum_probs=135.9

Q ss_pred             CcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHH
Q 027910            6 SSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIAR   85 (217)
Q Consensus         6 ~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   85 (217)
                      ..+|...+++|++|+||.||||+.+++.+.+++++|+.  ++.+.++|+++...                          
T Consensus        15 l~~p~~~~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~--------------------------   66 (184)
T 4dvc_A           15 LKTPASSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPE--GAKFQKNHVSFMGG--------------------------   66 (184)
T ss_dssp             CSSCCCSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCT--TCEEEEEECSSSSG--------------------------
T ss_pred             CCCCCCCCCEEEEEECCCCHhHHHHhHHHHHHHhhcCC--ceEEEEEecCCCCC--------------------------
Confidence            34455567899999999999999999999999998875  46677776654321                          


Q ss_pred             HHHHHHhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc--c
Q 027910           86 MTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE--F  163 (217)
Q Consensus        86 ~~~~a~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~--~  163 (217)
                                        +.+..+.++..++..+|.  .+.++..+|.+++..+.+..+.+.|.+++...|+|.+.|  +
T Consensus        67 ------------------~~~~~~a~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~  126 (184)
T 4dvc_A           67 ------------------NMGQAMSKAYATMIALEV--EDKMVPVMFNRIHTLRKPPKDEQELRQIFLDEGIDAAKFDAA  126 (184)
T ss_dssp             ------------------GGHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHTSCCCCSSHHHHHHHHHTTTCCHHHHHHH
T ss_pred             ------------------chHHHHHHHHHHHHHcCc--HHHHHHHHHHHHHHHhhccchHHHHHHHHHHhCCCHHHHHHH
Confidence                              001123345555566677  899999999999999999999999999999999999999  8


Q ss_pred             ccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeec--CCCCHHHHHHHHHHHh
Q 027910          164 LDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELS--GGQPPEVYLRAFQVAA  216 (217)
Q Consensus       164 l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~--G~~~~~~l~~~i~~~~  216 (217)
                      ++++++.+.+.++.+.+.++||+|||||+|||+|.+.  |..+++.|.++|+.+.
T Consensus       127 ~~s~~~~~~v~~~~~~a~~~gv~gTPtfiINGky~v~~~~~~s~e~~~~~i~~Ll  181 (184)
T 4dvc_A          127 YNGFAVDSMVHRFDKQFQDSGLTGVPAVVVNNRYLVQGQSAKSLDEYFDLVNYLL  181 (184)
T ss_dssp             HTSHHHHHHHHHHHHHHHHHTCCSSSEEEETTTEEECGGGCSSHHHHHHHHHHHT
T ss_pred             HhCHHHHHHHHHHHHHHHHcCCCcCCEEEECCEEeeCCcCCCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998874  5789999999998764

>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A

Probab=99.95  E-value=6.7e-28  Score=187.38  Aligned_cols=156  Identities=13%  Similarity=0.120  Sum_probs=130.9

Q ss_pred             CCcceEEEEEecccCchhhhhHHHH---HHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHH
Q 027910           10 GKKLIRIDVSSDTVCPWCFVGKRNL---DKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARM   86 (217)
Q Consensus        10 ~~~~v~i~~y~D~~CP~cy~~~~~l---~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   86 (217)
                      -..+++|++|+||.||+|+.+++.+   .++.++|++  +++++++|+++..                            
T Consensus        19 ~~~~~~vvef~d~~Cp~C~~~~~~l~~~~~l~~~~~~--~v~~~~~~~~~~~----------------------------   68 (191)
T 3l9s_A           19 VAGEPQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPE--GTKMTKYHVEFLG----------------------------   68 (191)
T ss_dssp             CCSSSCEEEEECTTCHHHHHHHHTSCHHHHHHHHSCT--TCCEEEEECSSSS----------------------------
T ss_pred             CCCCCeEEEEECCCChhHHHhChhccchHHHHHhCCC--CcEEEEEeccccc----------------------------
Confidence            3347899999999999999999986   688888875  5888999887631                            


Q ss_pred             HHHHHhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc--cc
Q 027910           87 TEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE--FL  164 (217)
Q Consensus        87 ~~~a~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~--~l  164 (217)
                                       +.+..+.+++.+|+.+|.  .++|+++||+++|.++. +.+.+.|.++++++|||.++|  ++
T Consensus        69 -----------------~~s~~aa~a~~aA~~~g~--~~~~~~~lf~a~~~~~~-~~~~~~L~~~a~~~Gld~~~~~~~~  128 (191)
T 3l9s_A           69 -----------------PLGKELTQAWAVAMALGV--EDKVTVPLFEAVQKTQT-VQSAADIRKVFVDAGVKGEDYDAAW  128 (191)
T ss_dssp             -----------------TTHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHTSCC-CSSHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             -----------------ccCHHHHHHHHHHHHcCc--HHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence                             013335567777888888  88999999999999887 899999999999999999999  88


Q ss_pred             cCcccchhHHHHHHHHHhCCCCeecEEEECCeeeec--CCCCH------HHHHHHHHHH
Q 027910          165 DDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELS--GGQPP------EVYLRAFQVA  215 (217)
Q Consensus       165 ~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~--G~~~~------~~l~~~i~~~  215 (217)
                      +++++.+.+.++.+.+.++||+|||||+|||++.+.  |..+.      +.+.++|+.+
T Consensus       129 ~s~~~~~~v~~~~~~a~~~gv~gtPtfvvnG~~~v~~~~~~~~~~~~~~~~~~~~i~~L  187 (191)
T 3l9s_A          129 NSFVVKSLVAQQEKAAADLQLQGVPAMFVNGKYQINPQGMDTSSMDVFVQQYADTVKYL  187 (191)
T ss_dssp             TSHHHHHHHHHHHHHHHHTTCCSSSEEEETTTEEECGGGSCCSSHHHHHHHHHHHHHHH
T ss_pred             hCHHHHHHHHHHHHHHHHhCCcccCEEEECCEEEECccccCCccchhhHHHHHHHHHHH
Confidence            999999999999999999999999999999998774  56654      4777777654

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=99.95  E-value=1.7e-28  Score=189.86  Aligned_cols=154  Identities=17%  Similarity=0.148  Sum_probs=129.4

Q ss_pred             cceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHHHHHHH
Q 027910           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFR   91 (217)
Q Consensus        12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~   91 (217)
                      .+++|+.|+||.||+|+.+++.+.++.++|    ++.++..|+.+++                                 
T Consensus        22 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~----~v~~~~~p~~~~~---------------------------------   64 (185)
T 3feu_A           22 GMAPVTEVFALSCGHCRNMENFLPVISQEA----GTDIGKMHITFNQ---------------------------------   64 (185)
T ss_dssp             CCCSEEEEECTTCHHHHHHGGGHHHHHHHH----TSCCEEEECCSSS---------------------------------
T ss_pred             CCCEEEEEECCCChhHHHhhHHHHHHHHHh----CCeEEEEeccCCc---------------------------------
Confidence            478999999999999999999999999876    3666666665432                                 


Q ss_pred             hcCCccccCCCCCCcHHHHHHHHHHhhc-CCchHHHHHHHHHHHHhhcCC--CCCCHHHHHHHHHHcCC-Ccccc--ccc
Q 027910           92 GLGLEYNMSGLTGNTLDSHRLLYLAGQQ-GLDKQHNLAEELFLGYFTQGK--YIGDKEFLVECARKVGV-EGAAE--FLD  165 (217)
Q Consensus        92 ~~g~~~~~~~~~~~s~~a~~~~~~a~~~-g~~~~~~~~~al~~a~~~~g~--~i~~~~~L~~ia~~~Gl-d~~~~--~l~  165 (217)
                                   ++..+.+++.+|+.+ |....++++++||+++|.++.  ++.+.+.|.+++.++|| |+++|  .+.
T Consensus        65 -------------~~~~aa~a~~Aa~~q~g~~~~~~~~~~lf~a~~~~~~~~~~~~~~~L~~~a~~~Gl~d~~~~~~~~~  131 (185)
T 3feu_A           65 -------------SAHIASMFYYAAEMQVDGAPDHAFMEDLFAATQMGEGTTLTEQQEAYSKAFTSRGLVSPYDFNEEQR  131 (185)
T ss_dssp             -------------HHHHHHHHHHHHHTTSSSSCCHHHHHHHHHHHTCCTTSCHHHHHHHHHHHHHTTTCCCGGGCCHHHH
T ss_pred             -------------cchHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence                         122345677777654 543368999999999999887  68899999999999999 99998  666


Q ss_pred             CcccchhHHHHHHHHHhCCCCeecEEEECCeeee--cCCCCHHHHHHHHHHHh
Q 027910          166 DPNSGLNEVHEELKKYSANISGVPHFVLNGKHEL--SGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       166 ~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~--~G~~~~~~l~~~i~~~~  216 (217)
                      + ++.+.++++.+.++++||+|||||+|||+|.+  +|+++++.|.++|+.+.
T Consensus       132 ~-~~~~~v~~~~~~a~~~gv~GtPtfvvng~~~v~~~Ga~~~e~~~~~i~~ll  183 (185)
T 3feu_A          132 D-TLIKKVDNAKMLSEKSGISSVPTFVVNGKYNVLIGGHDDPKQIADTIRYLL  183 (185)
T ss_dssp             H-HHHHHHHHHHHHHHHHTCCSSSEEEETTTEEECGGGCSSHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHHHHcCCCccCEEEECCEEEEecCCCCCHHHHHHHHHHHH
Confidence            6 77889999999999999999999999999887  89999999999999875

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=99.95  E-value=1.7e-27  Score=181.99  Aligned_cols=158  Identities=14%  Similarity=0.147  Sum_probs=138.1

Q ss_pred             cccCcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHH
Q 027910            3 QSVSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGI   82 (217)
Q Consensus         3 ~~~~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~   82 (217)
                      .++..|+...+++|++|+|+.||||+.+++.|.+++++++   +++++|+++++..                        
T Consensus        13 ~~~~~G~~~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~---~v~~~~~~~p~~~------------------------   65 (175)
T 3gyk_A           13 NAPVLGNPEGDVTVVEFFDYNCPYCRRAMAEVQGLVDADP---NVRLVYREWPILG------------------------   65 (175)
T ss_dssp             TSCEEECTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT---TEEEEEEECCCSC------------------------
T ss_pred             CCCCcCCCCCCEEEEEEECCCCccHHHHHHHHHHHHHhCC---CEEEEEEeCCCCC------------------------
Confidence            3567788999999999999999999999999999998765   4899999987632                        


Q ss_pred             HHHHHHHHHhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc
Q 027910           83 IARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE  162 (217)
Q Consensus        83 ~~~~~~~a~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~  162 (217)
                                           ++|..+++++.++..+|.  +++|++++|.    ++.++ +.+.|.++++++|+|.+.+
T Consensus        66 ---------------------~~s~~aa~~~~~a~~~~~--~~~~~~~lf~----~~~~~-~~~~l~~~a~~~Gld~~~~  117 (175)
T 3gyk_A           66 ---------------------EGSDFAARAALAARQQGK--YEAFHWALMG----MSGKA-NETGVLRIAREVGLDTEQL  117 (175)
T ss_dssp             ---------------------HHHHHHHHHHHHGGGGTC--HHHHHHHHHT----CSSCC-SHHHHHHHHHHTTCCHHHH
T ss_pred             ---------------------CChHHHHHHHHHHHHHhH--HHHHHHHHHh----cCCCC-CHHHHHHHHHHcCCCHHHH
Confidence                                 125567788888888877  9999988876    45566 7899999999999999999


Q ss_pred             --cccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHHHHh
Q 027910          163 --FLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       163 --~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~~~~  216 (217)
                        +++++++.+.+.++.+.+.++||+|||||+|||+ .+.|..+++.|.++|+++.
T Consensus       118 ~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~i~g~-~~~G~~~~~~l~~~i~~~l  172 (175)
T 3gyk_A          118 QRDMEAPEVTAHIAQSMALAQKLGFNGTPSFVVEDA-LVPGFVEQSQLQDAVDRAR  172 (175)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTCCSSSEEEETTE-EECSCCCHHHHHHHHHHHH
T ss_pred             HHHHhChHHHHHHHHHHHHHHHcCCccCCEEEECCE-EeeCCCCHHHHHHHHHHHH
Confidence              8999999999999999999999999999999998 7899999999999998764

>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*

Probab=99.95  E-value=1.4e-28  Score=195.81  Aligned_cols=164  Identities=16%  Similarity=0.113  Sum_probs=133.8

Q ss_pred             ccCcccCCcceEEEEEecccCchhhhhHHHH-HHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHH
Q 027910            4 SVSSSAGKKLIRIDVSSDTVCPWCFVGKRNL-DKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGI   82 (217)
Q Consensus         4 ~~~~~~~~~~v~i~~y~D~~CP~cy~~~~~l-~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~   82 (217)
                      ++..|++..+++|++|+||.||||+.+++.+ .++.++|.+..+|+++|+++++++                        
T Consensus        31 ~~~~G~~~A~vtIvef~Dy~CP~C~~~~~~~~~~l~~~~~~~g~V~~v~~~~p~~~------------------------   86 (226)
T 3f4s_A           31 DKLLGDPKAPILMIEYASLTCYHCSLFHRNVFPKIKEKYIDTGKMLYIFRHFPLDY------------------------   86 (226)
T ss_dssp             CCEESCTTCSEEEEEEECTTCHHHHHHHHHTHHHHHHHHTTTTSEEEEEEECCCSH------------------------
T ss_pred             CCccCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHcccCCeEEEEEEeCCCCh------------------------
Confidence            5667889999999999999999999999864 667778865568999999998731                        


Q ss_pred             HHHHHHHHHhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHcCCCccc
Q 027910           83 IARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGK-YIGDKEFLVECARKVGVEGAA  161 (217)
Q Consensus        83 ~~~~~~~a~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~-~i~~~~~L~~ia~~~Gld~~~  161 (217)
                                            .|..+++++.++..+|  ++++|+++||++....+. ++.+.+.|.++++++|||.++
T Consensus        87 ----------------------~s~~Aa~aa~aa~~~~--~f~~~~~aLF~~q~~~~~~~~~~~~~L~~iA~~~Gld~~~  142 (226)
T 3f4s_A           87 ----------------------RGLKAAMLSHCYEKQE--DYFNFNKAVFNSIDSWNYYNLSDLTLLQRIAALSNLKQDA  142 (226)
T ss_dssp             ----------------------HHHHHHHHGGGCCSHH--HHHHHHHHHHHTGGGSCSSSTTCCHHHHHHHHHTTCCHHH
T ss_pred             ----------------------hHHHHHHHHHHhhChH--HHHHHHHHHHHhCHhhcccccCcHHHHHHHHHHcCCCHHH
Confidence                                  0233445555554444  499999999998644322 366789999999999999999


Q ss_pred             c--cccCcccchhHHHHHHHHHh-CCCCeecEEEE---CCeeeecCCCC--------HHHHHHHHHHHh
Q 027910          162 E--FLDDPNSGLNEVHEELKKYS-ANISGVPHFVL---NGKHELSGGQP--------PEVYLRAFQVAA  216 (217)
Q Consensus       162 ~--~l~~~~~~~~~~~~~~~a~~-~gv~g~Pt~vv---~g~~~~~G~~~--------~~~l~~~i~~~~  216 (217)
                      |  +++++++.+.+.++.+.+.+ +||+|||||+|   ||+ .+.|..+        ++.|.++|++++
T Consensus       143 ~~~~l~s~~~~~~v~~~~~~a~~~~GV~GtPtfvv~~~nG~-~~~Ga~~~~~~G~~~~e~l~~~I~~~l  210 (226)
T 3f4s_A          143 FNQCINDKKIMDKIVNDKSLAINKLGITAVPIFFIKLNDDK-SYIEHNKVKHGGYKELKYFTNVIDKLY  210 (226)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHHCCCSSCEEEEEECCTT-CCCCGGGGEEESCCCHHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHHHHHHHHHcCCCcCCEEEEEcCCCE-EeeCCCCcccccccCHHHHHHHHHHHH
Confidence            8  88999999999999999999 99999999999   998 4566555        999999998764

>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}

Probab=99.95  E-value=3.5e-28  Score=190.88  Aligned_cols=164  Identities=12%  Similarity=0.079  Sum_probs=130.4

Q ss_pred             ccCcccCCcceEEEEEecccCchhhhhHHHHHHHHH-hcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHH
Q 027910            4 SVSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIA-SSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGI   82 (217)
Q Consensus         4 ~~~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~-~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~   82 (217)
                      ++..|++..+++|++|+||.||||..+++.+.+.++ +|.+..+|+++|++|++++.                       
T Consensus         7 ~~~~G~~~a~vtivef~D~~Cp~C~~~~~~~~~~l~~~~i~~g~v~~v~r~~pl~~~-----------------------   63 (205)
T 3gmf_A            7 HHLLGNPAAKLRLVEFVSYTCPHCSHFEIESEGQLKIGMVQPGKGAIEVRNFVRDPI-----------------------   63 (205)
T ss_dssp             EEEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTSEEEEEEECCCSHH-----------------------
T ss_pred             CceecCCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhccCCeEEEEEEeCCCCcc-----------------------
Confidence            456788999999999999999999999998877776 88666789999999975320                       


Q ss_pred             HHHHHHHHHhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHh--h-cCCCCC----------------
Q 027910           83 IARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYF--T-QGKYIG----------------  143 (217)
Q Consensus        83 ~~~~~~~a~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~--~-~g~~i~----------------  143 (217)
                                             |..+..++.+   .+++++++|+++||...-  . .+.+++                
T Consensus        64 -----------------------s~~aa~aa~~---~~~~~f~~~~~~Lf~~q~~~~~~~~~~~~~~~~~w~~~~~~~~l  117 (205)
T 3gmf_A           64 -----------------------DMTVALITNC---VPPSRFFTLHTAFMRSQAQWIGPLANSTEAQRQRWFNGTFATRT  117 (205)
T ss_dssp             -----------------------HHHHHHHHHH---SCHHHHHHHHHHHHHTHHHHCHHHHHCCHHHHHTTSSSCHHHHH
T ss_pred             -----------------------hHHHHHHHHh---cCHhHHHHHHHHHHHcCHHHHhcccccchhhhhccccchhHHHH
Confidence                                   1122233322   345569999999998652  1 111222                


Q ss_pred             ----CHHHHHHHHHHcCCCcccc--cccCcccchhHHHHHHHH-HhCCCCeecEEEECCeeeecCCCCHHHHHHHHHHHh
Q 027910          144 ----DKEFLVECARKVGVEGAAE--FLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       144 ----~~~~L~~ia~~~Gld~~~~--~l~~~~~~~~~~~~~~~a-~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~~~~  216 (217)
                          +.+.|.+++.++|||.++|  +++++++.+.+.++.+.+ .++||+|||||+|||+ .+.|..+++.|.++|+++.
T Consensus       118 ~~ia~~~~L~~~a~~~Gld~~~~~~~l~s~~~~~~v~~~~~~a~~~~GV~GtPtfvvng~-~~~G~~~~e~l~~~i~~~~  196 (205)
T 3gmf_A          118 RAIASDFRFYDFMAARGMDRSTLDRCLSNEALAKKLAAETDEAINQYNVSGTPSFMIDGI-LLAGTHDWASLRPQILARL  196 (205)
T ss_dssp             HHHHHHTTHHHHHHTTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCSSSEEEETTE-ECTTCCSHHHHHHHHHHHH
T ss_pred             HhccCHHHHHHHHHHcCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHcCCccCCEEEECCE-EEeCCCCHHHHHHHHHHHh
Confidence                1235677788899999999  899999999999999999 9999999999999999 6899999999999999886


Q ss_pred             C
Q 027910          217 N  217 (217)
Q Consensus       217 ~  217 (217)
                      |
T Consensus       197 ~  197 (205)
T 3gmf_A          197 N  197 (205)
T ss_dssp             T
T ss_pred             h
Confidence            5

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=99.95  E-value=3.8e-27  Score=183.22  Aligned_cols=156  Identities=19%  Similarity=0.192  Sum_probs=133.6

Q ss_pred             CCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHHHHH
Q 027910           10 GKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEV   89 (217)
Q Consensus        10 ~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   89 (217)
                      +..+++|++|+|+.||+|+.+.+.+.++.++|++  ++.+.+.|+.+++                               
T Consensus        23 ~~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~--~v~~~~~~~~~~~-------------------------------   69 (195)
T 3hd5_A           23 TPGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQ--DVVLKQVPIAFNA-------------------------------   69 (195)
T ss_dssp             STTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCT--TEEEEEEECCSSG-------------------------------
T ss_pred             CCCCeEEEEEECCCCccHHHhhHHHHHHHHHCCC--CeEEEEEecccCc-------------------------------
Confidence            5578999999999999999999999999998874  5666666554321                               


Q ss_pred             HHhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc--cccCc
Q 027910           90 FRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE--FLDDP  167 (217)
Q Consensus        90 a~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~--~l~~~  167 (217)
                                     ++..+.+++.+++.+|   +++++++||+++|.++.++.+.+.|.++++++|+|.+++  +++++
T Consensus        70 ---------------~s~~aa~a~~aa~~~g---~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~s~  131 (195)
T 3hd5_A           70 ---------------GMKPLQQLYYTLQALE---RPDLHPKVFTAIHTERKRLFDKKAMGEWAASQGVDRAKFDSVFDSF  131 (195)
T ss_dssp             ---------------GGHHHHHHHHHHHHTT---CTTHHHHHHHHHHTSCCCCCSHHHHHHHHHHTTCCHHHHHHHHTCH
T ss_pred             ---------------chHHHHHHHHHHHhcC---HHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHHHHHHcCH
Confidence                           2344567777777777   789999999999999999999999999999999999998  88999


Q ss_pred             ccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCH---HHHHHHHHHHh
Q 027910          168 NSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPP---EVYLRAFQVAA  216 (217)
Q Consensus       168 ~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~---~~l~~~i~~~~  216 (217)
                      ++++.+.++.+.+.++||+|||||+|||++.+.|.++.   +.|.++|+.+.
T Consensus       132 ~~~~~v~~~~~~a~~~gv~gtPt~ving~~~~~g~~~~~~~e~~~~~i~~L~  183 (195)
T 3hd5_A          132 SVQTQVQRASQLAEAAHIDGTPAFAVGGRYMTSPVLAGNDYAGALKVVDQLI  183 (195)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSSSEEEETTTEEECTTTTTGGGTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCcCceEEECCEEEeCccccCChHHHHHHHHHHHH
Confidence            99999999999999999999999999999888887654   77888887653

>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A

Probab=99.95  E-value=1.6e-27  Score=184.87  Aligned_cols=169  Identities=17%  Similarity=0.212  Sum_probs=130.3

Q ss_pred             CcceEEEEEecccCchhhhhHHHH-HHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHHHHH
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNL-DKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEV   89 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l-~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   89 (217)
                      ..++++..|+|+.|||||.+++.+ .++.++|+.  .++++  ++.+...    +.. ..        .+..++..+...
T Consensus        16 ~~~~~~ief~d~~CP~C~~~~~~l~~~l~~~~~~--~v~~~--~~~l~~~----~~~-~~--------~~~~~~~~~~~~   78 (195)
T 3c7m_A           16 NADKTLIKVFSYACPFCYKYDKAVTGPVSEKVKD--IVAFT--PFHLETK----GEY-GK--------QASEVFAVLINK   78 (195)
T ss_dssp             SCTTEEEEEECTTCHHHHHHHHHTHHHHHHHTTT--TCEEE--EEECTTS----STT-HH--------HHHHHHHHHHHH
T ss_pred             CCCcEEEEEEeCcCcchhhCcHHHHHHHHHhCCC--ceEEE--EEecCcc----ccc-cH--------HHHHHHHHHHHh
Confidence            566677778999999999999999 888887753  34444  4444332    110 11        122233444455


Q ss_pred             HHhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHH----HHHcCCCcccc--c
Q 027910           90 FRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVEC----ARKVGVEGAAE--F  163 (217)
Q Consensus        90 a~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~i----a~~~Gld~~~~--~  163 (217)
                      +.+.|++ .++        ++           ..+++|+++||+++|.+++++++.++|.++    ++++|||.+++  +
T Consensus        79 ~~~~~~~-~~~--------~~-----------~~~~~~~~~l~~a~~~~~~~~~~~~~l~~~~~~~a~~~Gld~~~~~~~  138 (195)
T 3c7m_A           79 DKAAGIS-LFD--------AN-----------SQFKKAKFAYYAAYHDKKERWSDGKDPAAFIKTGLDAAGMSQADFEAA  138 (195)
T ss_dssp             HHHTTCC-TTS--------TT-----------CHHHHHHHHHHHHHHTSCCCTTTTTCHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             hhhcCCC-chh--------HH-----------HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhHHHHcCCCHHHHHHH
Confidence            5666665 322        11           237899999999999999999999999999    99999999988  8


Q ss_pred             ccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeec--CCCCHHHHHHHHHHHh
Q 027910          164 LDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELS--GGQPPEVYLRAFQVAA  216 (217)
Q Consensus       164 l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~--G~~~~~~l~~~i~~~~  216 (217)
                      ++++++++.+.++.+.+.++||+|||||+|||++.+.  |..+++.|.++|+++.
T Consensus       139 ~~~~~~~~~v~~~~~~a~~~gv~gtPt~~ing~~~~~~~g~~~~~~l~~~i~~~l  193 (195)
T 3c7m_A          139 LKEPAVQETLEKWKASYDVAKIQGVPAYVVNGKYLIYTKSIKSIDAMADLIRELA  193 (195)
T ss_dssp             HTSHHHHHHHHHGGGHHHHHHHHCSSEEEETTTEEECGGGCCCHHHHHHHHHHHH
T ss_pred             HcChHHHHHHHHHHHHHHHcCCCccCEEEECCEEEeccCCCCCHHHHHHHHHHHH
Confidence            8999999999999999999999999999999997665  9999999999999875

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=99.95  E-value=6e-27  Score=181.65  Aligned_cols=155  Identities=10%  Similarity=0.036  Sum_probs=130.5

Q ss_pred             cceEEEEEecccCchhhhhHHHH---HHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHHHH
Q 027910           12 KLIRIDVSSDTVCPWCFVGKRNL---DKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTE   88 (217)
Q Consensus        12 ~~v~i~~y~D~~CP~cy~~~~~l---~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   88 (217)
                      .+++|..|+|+.||+|+.+++.+   .++.++|++  +++++++++++..                              
T Consensus        14 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~------------------------------   61 (189)
T 3l9v_A           14 DAPAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQ--GSRMVKYHVSLLG------------------------------   61 (189)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCT--TCCEEEEECSSSS------------------------------
T ss_pred             CCCEEEEEECCCChhHHHHhHhccchHHHHHhCCC--CCEEEEEechhcc------------------------------
Confidence            46789999999999999999986   566666764  6999999998631                              


Q ss_pred             HHHhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHc-CCCcccc--ccc
Q 027910           89 VFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKV-GVEGAAE--FLD  165 (217)
Q Consensus        89 ~a~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~-Gld~~~~--~l~  165 (217)
                                     +.|..+++++.+|+.+|.  .++|++++|+++|.++. +.+.+.|.+++.++ |||.++|  +++
T Consensus        62 ---------------~~s~~aa~a~~aA~~~g~--~~~~~~~lf~a~~~~~~-~~~~~~l~~~a~~~~Gld~~~~~~~~~  123 (189)
T 3l9v_A           62 ---------------PLGHELTRAWALAMVMKE--TDVIEKAFFTAGMVEKR-LHSPDDVRRVFMSATGISRGEYDRSIK  123 (189)
T ss_dssp             ---------------TTHHHHHHHHHHHHHHTC--HHHHHHHHHHHHTTTCC-CCSHHHHHHHHHHHHCCCHHHHHHHTT
T ss_pred             ---------------cccHHHHHHHHHHHHcCc--HHHHHHHHHHHHhhhcc-CCCHHHHHHHHHHccCCCHHHHHHHHh
Confidence                           113445677777888888  89999999999999988 89999999999999 9999998  889


Q ss_pred             CcccchhHHHHHHHHHhCCCCeecEEEECCeeeecC--CCCH------HHHHHHHHHHh
Q 027910          166 DPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSG--GQPP------EVYLRAFQVAA  216 (217)
Q Consensus       166 ~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G--~~~~------~~l~~~i~~~~  216 (217)
                      ++++.+.++++.+.+.++||+|||||+|||+|.+.|  ..+.      +.+.++|+.+.
T Consensus       124 s~~~~~~v~~~~~~a~~~gv~GtPt~~vng~~~v~~~~~~~~~~~~~~~~~~~~i~~Li  182 (189)
T 3l9v_A          124 SPAVNDMVALQERLFKEYGVRGTPSVYVRGRYHINNAAFGAFSVENFRSRYAAVVRKLL  182 (189)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCCSSSEEEETTTEEECGGGCCCSSHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhCCCccCEEEECCEEEECccccccccccchHHHHHHHHHHHH
Confidence            999999999999999999999999999999988865  3443      78888887653

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=99.91  E-value=5e-24  Score=162.77  Aligned_cols=155  Identities=11%  Similarity=0.088  Sum_probs=114.9

Q ss_pred             ccCcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHH
Q 027910            4 SVSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGII   83 (217)
Q Consensus         4 ~~~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~   83 (217)
                      ++..|+...+++|++|+|+.||||+.+++.+.+++++|.+..+++++|+++++.+..      ...              
T Consensus        19 ~~~~G~~~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------~~~--------------   78 (175)
T 1z6m_A           19 GLHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFDKEKES------LQR--------------   78 (175)
T ss_dssp             SEEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECCCCSTT------THH--------------
T ss_pred             CcccCCCCCCeEEEEEECCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEeCCCCccc------HHH--------------
Confidence            345677889999999999999999999999999998882223799999999875310      000              


Q ss_pred             HHHHHHHHhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHH-HcCCCcccc
Q 027910           84 ARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECAR-KVGVEGAAE  162 (217)
Q Consensus        84 ~~~~~~a~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~-~~Gld~~~~  162 (217)
                                               +..+..++...+++++++|+++||++....+ ++ +.+.|.+++. ++|+|.+  
T Consensus        79 -------------------------a~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~-~~-~~~~l~~~a~~~~Gld~~--  129 (175)
T 1z6m_A           79 -------------------------GNVMHHYIDYSAPEQALSALHKMFATQDEWG-NL-TLEEVATYAEKNLGLKEQ--  129 (175)
T ss_dssp             -------------------------HHHHHTTCCTTCHHHHHHHHHHHHHTHHHHT-TS-CHHHHHHHHHHTSCCCCC--
T ss_pred             -------------------------HHHHHHHHHhcChHHHHHHHHHHHHcChhhc-cC-CHHHHHHHHHHhcCCCcc--
Confidence                                     0000001111234458999999999864433 34 6778888864 6899865  


Q ss_pred             cccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHH
Q 027910          163 FLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQ  213 (217)
Q Consensus       163 ~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~  213 (217)
                           +..+.+.++.+.++++||+|||||+|||+ .+.|..+++.|.++|+
T Consensus       130 -----~~~~~~~~~~~~a~~~gv~gtPt~vvng~-~~~G~~~~~~l~~~i~  174 (175)
T 1z6m_A          130 -----KDATLVSAVIAEANAAHIQFVPTIIIGEY-IFDESVTEEELRGYIE  174 (175)
T ss_dssp             -----CCHHHHHHHHHHHHHHTCCSSCEEEETTE-EECTTCCHHHHHHHHT
T ss_pred             -----cCHHHHHHHHHHHHHcCCCCcCeEEECCE-EccCCCCHHHHHHHhc
Confidence                 23456777888899999999999999999 6799999999999885

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=99.72  E-value=1.7e-17  Score=123.23  Aligned_cols=129  Identities=15%  Similarity=0.213  Sum_probs=90.8

Q ss_pred             cccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHH
Q 027910            7 SSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARM   86 (217)
Q Consensus         7 ~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   86 (217)
                      -+....+++|++|+||.||||..+++.+.    ++.   +++|+|+.|++....                          
T Consensus         9 ~~~~~a~~~vv~f~D~~Cp~C~~~~~~l~----~l~---~v~v~~~~~P~~~~~--------------------------   55 (147)
T 3gv1_A            9 EVRGNGKLKVAVFSDPDCPFCKRLEHEFE----KMT---DVTVYSFMMPIAGLH--------------------------   55 (147)
T ss_dssp             EEETTCCEEEEEEECTTCHHHHHHHHHHT----TCC---SEEEEEEECCCTTTC--------------------------
T ss_pred             eecCCCCEEEEEEECCCChhHHHHHHHHh----hcC---ceEEEEEEccccccC--------------------------
Confidence            35677899999999999999999998775    342   699999988874321                          


Q ss_pred             HHHHHhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccccccC
Q 027910           87 TEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDD  166 (217)
Q Consensus        87 ~~~a~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~~l~~  166 (217)
                                       ++|..+++++.+|.+  +  ...+.+ ++.    .|. +               +.     .+
T Consensus        56 -----------------~~s~~~a~a~~ca~d--~--~~a~~~-~~~----~g~-~---------------~~-----~~   88 (147)
T 3gv1_A           56 -----------------PDAARKAQILWCQPD--R--AKAWTD-WMR----KGK-F---------------PV-----GG   88 (147)
T ss_dssp             -----------------TTHHHHHHHHHTSSS--H--HHHHHH-HHH----HCC-C---------------CT-----TC
T ss_pred             -----------------hhHHHHHHHHHcCCC--H--HHHHHH-HHh----CCC-C---------------CC-----cc
Confidence                             123334455544432  2  222222 221    221 1               10     13


Q ss_pred             cccchhHHHHHHHHHhCCCCeecEEEE-CCeeeecCCCCHHHHHHHHHHHh
Q 027910          167 PNSGLNEVHEELKKYSANISGVPHFVL-NGKHELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       167 ~~~~~~~~~~~~~a~~~gv~g~Pt~vv-~g~~~~~G~~~~~~l~~~i~~~~  216 (217)
                      ++....+.++.+.+.++||.|||||+| ||+ .+.|+.+++.|+++|+++.
T Consensus        89 ~~~~~~v~~~~~la~~~gI~gtPt~vi~nG~-~i~G~~~~~~l~~~i~~~~  138 (147)
T 3gv1_A           89 SICDNPVAETTSLGEQFGFNGTPTLVFPNGR-TQSGYSPMPQLEEIIRKNQ  138 (147)
T ss_dssp             CCCSCSHHHHHHHHHHTTCCSSCEEECTTSC-EEESCCCTTHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHhCCCccCEEEEECCE-EeeCCCCHHHHHHHHHHHH
Confidence            345668999999999999999999999 787 7899999999999998764

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=99.67  E-value=1.8e-16  Score=127.05  Aligned_cols=138  Identities=9%  Similarity=-0.073  Sum_probs=96.1

Q ss_pred             CcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHH
Q 027910            6 SSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIAR   85 (217)
Q Consensus         6 ~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   85 (217)
                      ..|+...+++|++|+|+.||||..+++.+.++++.    .+|+|+|+++++-.                           
T Consensus        91 ~~G~~~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~----g~v~v~~~~~p~~~---------------------------  139 (241)
T 1v58_A           91 LDGKKDAPVIVYVFADPFCPYCKQFWQQARPWVDS----GKVQLRTLLVGVIK---------------------------  139 (241)
T ss_dssp             EESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHT----TSEEEEEEECCCSS---------------------------
T ss_pred             eECCCCCCeEEEEEECCCChhHHHHHHHHHHHHhC----CcEEEEEEECCcCC---------------------------
Confidence            34677889999999999999999999999988773    46999999987521                           


Q ss_pred             HHHHHHhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCccccccc
Q 027910           86 MTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLD  165 (217)
Q Consensus        86 ~~~~a~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~~l~  165 (217)
                                        +.|..+++++.++.+  +.++++++..+|..    +                |++..  ...
T Consensus       140 ------------------~~s~~~a~a~~~a~d--~~~~~~~~~~~~~~----~----------------~l~~~--~~~  177 (241)
T 1v58_A          140 ------------------PESPATAAAILASKD--PAKTWQQYEASGGK----L----------------KLNVP--ANV  177 (241)
T ss_dssp             ------------------TTHHHHHHHHHHSSS--HHHHHHHHHHTTTC----C----------------CCCCC--SSC
T ss_pred             ------------------CcHHHHHHHHHHccC--HHHHHHHHHHHhcc----C----------------CCCcc--ccC
Confidence                              012223344444433  33366666665531    1                23321  123


Q ss_pred             CcccchhHHHHHHHHHhCCCCeecEEEEC---Cee-eecCCCCHHHHHHHHHHHh
Q 027910          166 DPNSGLNEVHEELKKYSANISGVPHFVLN---GKH-ELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       166 ~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~---g~~-~~~G~~~~~~l~~~i~~~~  216 (217)
                      ++++...+.++.+.++++||.|||||+++   |++ .+.|+.+.+.|.++|++.+
T Consensus       178 ~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~~~~~G~~~~~~L~~~l~~~~  232 (241)
T 1v58_A          178 STEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQQAVGLPDQKTLNIIMGNKL  232 (241)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEEEEEESSCCHHHHHHHTTC--
T ss_pred             CHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHHHHHH
Confidence            44556678889999999999999999995   553 5799999999999987643

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=99.52  E-value=1.8e-13  Score=107.44  Aligned_cols=128  Identities=18%  Similarity=0.224  Sum_probs=87.0

Q ss_pred             ccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHHH
Q 027910            8 SAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMT   87 (217)
Q Consensus         8 ~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   87 (217)
                      +++..+++|.+|+|+.||||..+++.+.++.+     .+++++|+.+++....+       .                  
T Consensus        82 g~~~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~-----~~v~v~~~~~p~~~~~~-------~------------------  131 (211)
T 1t3b_A           82 PAKNEKHVVTVFMDITCHYCHLLHQQLKEYND-----LGITVRYLAFPRAGMNN-------Q------------------  131 (211)
T ss_dssp             CCTTCSEEEEEEECTTCHHHHHHHTTHHHHHH-----TTEEEEEEECCSSTTCS-------H------------------
T ss_pred             cCCCCCEEEEEEECCCCHhHHHHHHHHHHHHh-----CCcEEEEEECCccCCCc-------h------------------
Confidence            45578999999999999999999999988654     25899998887643211       0                  


Q ss_pred             HHHHhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccccccCc
Q 027910           88 EVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDP  167 (217)
Q Consensus        88 ~~a~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~~l~~~  167 (217)
                                        +...+.++.+  ..++  ...+++.     + .+.++               +   +    .
T Consensus       132 ------------------s~~~a~~~~~--a~d~--~~a~~~~-----~-~~~~~---------------~---~----~  161 (211)
T 1t3b_A          132 ------------------TAKQMEAIWT--AKDP--VFALNEA-----E-KGNLP---------------K---E----V  161 (211)
T ss_dssp             ------------------HHHHHHHHHH--SSSH--HHHHHHH-----H-TTCCC---------------S---S----C
T ss_pred             ------------------HHHHHHHHHh--CcCH--HHHHHHH-----H-cCCCC---------------C---h----H
Confidence                              0001111111  2233  3333332     2 22221               1   0    1


Q ss_pred             ccchhHHHHHHHHHhCCCCeecEEEE-CCeeeecCCCCHHHHHHHHHHHh
Q 027910          168 NSGLNEVHEELKKYSANISGVPHFVL-NGKHELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       168 ~~~~~~~~~~~~a~~~gv~g~Pt~vv-~g~~~~~G~~~~~~l~~~i~~~~  216 (217)
                      .....+.++.+.+.++||.|||||++ ||+ .+.|+.+.+.|.+.|+++.
T Consensus       162 ~~~~~v~~~~~l~~~~gV~gTPt~vi~nG~-~~~G~~~~~~l~~~l~~~~  210 (211)
T 1t3b_A          162 KTPNIVKKHYELGIQFGVRGTPSIVTSTGE-LIGGYLKPADLLRALEETA  210 (211)
T ss_dssp             CCSSHHHHHHHHHHHHTCCSSCEEECTTSC-CCCSCCCHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHcCCCcCCEEEEeCCE-EecCCCCHHHHHHHHHhcc
Confidence            23457888899999999999999999 887 7899999999999998753

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=99.41  E-value=1.8e-12  Score=102.01  Aligned_cols=129  Identities=18%  Similarity=0.256  Sum_probs=86.2

Q ss_pred             cccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHH
Q 027910            7 SSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARM   86 (217)
Q Consensus         7 ~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   86 (217)
                      .|....+++|.+|+|+.||||...++.+.++.+    . +++++|+++++....+       .                 
T Consensus        81 ~g~~~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~----~-~v~v~~~~~p~~~~~~-------~-----------------  131 (216)
T 1eej_A           81 YKAPQEKHVITVFTDITCGYCHKLHEQMADYNA----L-GITVRYLAFPRQGLDS-------D-----------------  131 (216)
T ss_dssp             ECCTTCCEEEEEEECTTCHHHHHHHTTHHHHHH----T-TEEEEEEECCTTCSSS-------H-----------------
T ss_pred             ecCCCCCEEEEEEECCCCHHHHHHHHHHHHHHh----C-CcEEEEEECCccCCCc-------h-----------------
Confidence            356678999999999999999999999988765    2 6899998887532110       0                 


Q ss_pred             HHHHHhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccccccC
Q 027910           87 TEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDD  166 (217)
Q Consensus        87 ~~~a~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~~l~~  166 (217)
                                         +...++++.++  .++  ...+++.++    ..+                 ++.       
T Consensus       132 -------------------s~~~a~a~~~a--~d~--~~~~~~~~~----~~~-----------------~~~-------  160 (216)
T 1eej_A          132 -------------------AEKEMKAIWCA--KDK--NKAFDDVMA----GKS-----------------VAP-------  160 (216)
T ss_dssp             -------------------HHHHHHHHHTS--SSH--HHHHHHHHT----TCC-----------------CCC-------
T ss_pred             -------------------HHHHHHHHHhc--cCH--HHHHHHHHh----CCC-----------------CCh-------
Confidence                               11111222222  122  333433322    111                 111       


Q ss_pred             cccchhHHHHHHHHHhCCCCeecEEEE-CCeeeecCCCCHHHHHHHHHHHh
Q 027910          167 PNSGLNEVHEELKKYSANISGVPHFVL-NGKHELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       167 ~~~~~~~~~~~~~a~~~gv~g~Pt~vv-~g~~~~~G~~~~~~l~~~i~~~~  216 (217)
                      +.....+.++.+.+.++||.|||||++ ||+ .+.|+.+.+.|.+.|+++.
T Consensus       161 ~~~~~~v~~~~~l~~~~gV~gtPt~v~~dG~-~~~G~~~~~~l~~~l~~~~  210 (216)
T 1eej_A          161 ASCDVDIADHYALGVQLGVSGTPAVVLSNGT-LVPGYQPPKEMKEFLDEHQ  210 (216)
T ss_dssp             CCCSCCHHHHHHHHHHHTCCSSSEEECTTSC-EEESCCCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCCccCEEEEcCCe-EecCCCCHHHHHHHHHHhh
Confidence            123345778888899999999999999 665 7899999999999998754

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=99.11  E-value=1.5e-10  Score=89.71  Aligned_cols=61  Identities=18%  Similarity=0.227  Sum_probs=57.0

Q ss_pred             CCCCCHHHHHHHHHHcCCCcccc--cccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeec
Q 027910          140 KYIGDKEFLVECARKVGVEGAAE--FLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELS  200 (217)
Q Consensus       140 ~~i~~~~~L~~ia~~~Gld~~~~--~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~  200 (217)
                      ++|++.++|.+++.++|||.+++  +++++++.+.+.++.+.+...||+|||+|+|||+|.+.
T Consensus         1 ~~i~d~~~L~~~a~~~Gld~~~~~~~l~s~~~~~~v~~~~~~a~~~gi~gvP~fvingk~~~~   63 (197)
T 1un2_A            1 QTIRSASDIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKAAADVQLRGVPAMFVNGKYQLN   63 (197)
T ss_dssp             CCCSSHHHHHHHHHHHTCCHHHHHHHHTSHHHHHHHHHHHHHHHHTTCCSSSEEEETTTEEEC
T ss_pred             CCCCCHHHHHHHHHHcCCCHHHHHHHHhCHHHHHHHHHHHHHHHHcCCCcCCEEEEcceEecC
Confidence            47899999999999999999999  88999999999999999999999999999999998775

>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}

Probab=99.04  E-value=6.9e-10  Score=89.46  Aligned_cols=41  Identities=20%  Similarity=0.245  Sum_probs=33.3

Q ss_pred             CCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeeccc
Q 027910           10 GKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFL   56 (217)
Q Consensus        10 ~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l   56 (217)
                      .+.+.+|++|+||.||||...++.+.+.++.      ++|.|.+|++
T Consensus       145 ~~gk~~I~vFtDp~CPYCkkl~~~l~~~l~~------~~Vr~i~~Pi  185 (273)
T 3tdg_A          145 ANKDKILYIVSDPMCPHCQKELTKLRDHLKE------NTVRMVVVGW  185 (273)
T ss_dssp             GGTTCEEEEEECTTCHHHHHHHHTHHHHHHH------CEEEEEECCC
T ss_pred             CCCCeEEEEEECcCChhHHHHHHHHHHHhhC------CcEEEEEeec
Confidence            5678999999999999999999999977762      5566665553

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=98.73  E-value=1.5e-08  Score=78.44  Aligned_cols=81  Identities=14%  Similarity=0.101  Sum_probs=62.6

Q ss_pred             CcceEEEEEecccCchhhhhHHHH---HHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHHH
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNL---DKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMT   87 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l---~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   87 (217)
                      ..+++|..||||.||+|+...+.+   .++.++|++  ++.+...|+...+.                            
T Consensus       112 ~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~--~v~~~~~~v~~~~~----------------------------  161 (197)
T 1un2_A          112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPE--GVKMTKYHVNFMGG----------------------------  161 (197)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCT--TCCEEEEECSSSSH----------------------------
T ss_pred             CCCCEEEEEECCCChhHHHhCcccccHHHHHHHCCC--CCEEEEeccCcCCc----------------------------
Confidence            356899999999999999999988   888887764  67888777754210                            


Q ss_pred             HHHHhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcC
Q 027910           88 EVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQG  139 (217)
Q Consensus        88 ~~a~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g  139 (217)
                                      +.+..+.++..+++.+|.  .++++.+||.+++.++
T Consensus       162 ----------------~~~~~~a~a~~aa~~~g~--~~~~~~~lF~ai~~~~  195 (197)
T 1un2_A          162 ----------------DLGKDLTQAWAVAMALGV--EDKVTVPLFEGVQKTL  195 (197)
T ss_dssp             ----------------HHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHTTC
T ss_pred             ----------------cchHHHHHHHHHHHHcCC--HHHhhHHHHHHHHHHc
Confidence                            013345677778888898  9999999999987654

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=98.42  E-value=5.1e-07  Score=59.15  Aligned_cols=35  Identities=29%  Similarity=0.447  Sum_probs=29.9

Q ss_pred             HhCCCCeecEEEECCeeeecCCCCHHHHHHHHHHH
Q 027910          181 YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       181 ~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~~~  215 (217)
                      .+.|+.|+||+++||+..+.|..+.+.|.+.|+++
T Consensus        50 ~~~~v~~~Pt~~~~G~~~~~G~~~~~~l~~~l~~~   84 (85)
T 1fo5_A           50 MEYGIMAVPTIVINGDVEFIGAPTKEALVEAIKKR   84 (85)
T ss_dssp             TSTTTCCSSEEEETTEEECCSSSSSHHHHHHHHHH
T ss_pred             HHCCCcccCEEEECCEEeeecCCCHHHHHHHHHHh
Confidence            45699999999999886578988899999999875

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=98.33  E-value=8.4e-07  Score=58.07  Aligned_cols=37  Identities=19%  Similarity=0.293  Sum_probs=31.5

Q ss_pred             HHhCCCCeecEEEECCeeeecCCCCHHHHHHHHHHHh
Q 027910          180 KYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       180 a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~~~~  216 (217)
                      +.+.|+.|+||+++||+..+.|..+.+.|.+.|+++.
T Consensus        48 ~~~~~v~~~Pt~~~~G~~~~~G~~~~~~l~~~l~~~l   84 (85)
T 1nho_A           48 AIEYGLMAVPAIAINGVVRFVGAPSREELFEAINDEM   84 (85)
T ss_dssp             GGGTCSSCSSEEEETTTEEEECSSCCHHHHHHHHHHC
T ss_pred             HHhCCceeeCEEEECCEEEEccCCCHHHHHHHHHHHh
Confidence            4678999999999998855789888999999998764

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=98.14  E-value=2.5e-05  Score=56.07  Aligned_cols=40  Identities=10%  Similarity=0.049  Sum_probs=31.9

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEe
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWH   52 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~   52 (217)
                      ..++.|.+|+...||+|....+.+.++.++|++.  +.+...
T Consensus        28 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~--~~~~~v   67 (148)
T 2b5x_A           28 GEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ--LNVVAV   67 (148)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT--SEEEEE
T ss_pred             CCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCC--cEEEEE
Confidence            4467788888999999999999999999888753  555443

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=98.04  E-value=0.00014  Score=53.55  Aligned_cols=129  Identities=12%  Similarity=0.069  Sum_probs=82.9

Q ss_pred             cCcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHH
Q 027910            5 VSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIA   84 (217)
Q Consensus         5 ~~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~   84 (217)
                      ++...-..++.|..|+..-||+|....+.|.++.++|+   ++.|...  ....         .+.              
T Consensus        30 ~~l~~~~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~---~v~vv~i--~~d~---------~~~--------------   81 (165)
T 3ha9_A           30 ISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYR---EISVIAI--DFWT---------AEA--------------   81 (165)
T ss_dssp             ECGGGCCSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT---TEEEEEE--ECCS---------HHH--------------
T ss_pred             eeHHHhCCCEEEEEEECCCCcchhhhHHHHHHHHHHcC---CcEEEEE--Eecc---------ccc--------------
Confidence            34444456788999999999999999999999998875   4555443  3221         000              


Q ss_pred             HHHHHHHhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCC-Cccccc
Q 027910           85 RMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGV-EGAAEF  163 (217)
Q Consensus        85 ~~~~~a~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gl-d~~~~~  163 (217)
                           .+..|+.                       .+                ......+.+.+.+++++.|+ +..  .
T Consensus        82 -----~~~~~~~-----------------------~~----------------~~~~~~~~~~~~~~~~~~~~~~~~--~  115 (165)
T 3ha9_A           82 -----LKALGLN-----------------------KP----------------GYPPPDTPEMFRKFIANYGDPSWI--M  115 (165)
T ss_dssp             -----HHHHTCC-----------------------ST----------------TSCCCCCHHHHHHHHHHHSCTTSE--E
T ss_pred             -----ccccccc-----------------------cc----------------cCCCCCCHHHHHHHHHHcCCCCee--E
Confidence                 0011110                       00                11123467888888888888 322  2


Q ss_pred             ccCcccchhHHHHHHHHHhCCCCeecEEEE---CCeeeecCCC-CHHHHHHHHHHHh
Q 027910          164 LDDPNSGLNEVHEELKKYSANISGVPHFVL---NGKHELSGGQ-PPEVYLRAFQVAA  216 (217)
Q Consensus       164 l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv---~g~~~~~G~~-~~~~l~~~i~~~~  216 (217)
                      +.+         +...+...|+.++|+++|   +|+....|.. +.+.|.+.|+++.
T Consensus       116 ~~d---------~~~~~~~~~v~~~P~~~lid~~G~i~~~g~~~~~~~l~~~l~~l~  163 (165)
T 3ha9_A          116 VMD---------DGSLVEKFNVRSIDYIVIMDKSSNVLYAGTTPSLGELESVIKSVQ  163 (165)
T ss_dssp             EEC---------CSHHHHHTTCCSSSEEEEEETTCCEEEEEESCCHHHHHHHHHHC-
T ss_pred             EeC---------hHHHHHHhCCCCceEEEEEcCCCcEEEeCCCCCHHHHHHHHHHHh
Confidence            222         123456779999999987   5774446888 8999999998764

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=98.00  E-value=0.00031  Score=51.08  Aligned_cols=46  Identities=11%  Similarity=0.108  Sum_probs=34.5

Q ss_pred             cCcccCCcceEEEEEecccCchhhhh-HHHHHHHHHhcCCCCceeEEE
Q 027910            5 VSSSAGKKLIRIDVSSDTVCPWCFVG-KRNLDKAIASSKDQYDFEIRW   51 (217)
Q Consensus         5 ~~~~~~~~~v~i~~y~D~~CP~cy~~-~~~l~~~~~~~~~~~~v~v~~   51 (217)
                      ++...-..++.|..|+..-||.|... .+.|.++.++|++ .++.+..
T Consensus        21 ~~l~~~~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~-~~v~~v~   67 (158)
T 3eyt_A           21 LTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPE-DKVAVLG   67 (158)
T ss_dssp             CCTGGGTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCT-TTEEEEE
T ss_pred             cCHHHhCCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCc-CCEEEEE
Confidence            44444456778888888999999995 9999999999874 3455543

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=97.97  E-value=0.00026  Score=51.16  Aligned_cols=42  Identities=17%  Similarity=-0.102  Sum_probs=32.3

Q ss_pred             cCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEE
Q 027910            9 AGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRW   51 (217)
Q Consensus         9 ~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~   51 (217)
                      .-..+..|.+|+..-||+|....+.|.++.++|++ .++.+..
T Consensus        23 ~~~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~-~~v~vv~   64 (151)
T 2f9s_A           23 DLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKS-QGVEIVA   64 (151)
T ss_dssp             GGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG-GTEEEEE
T ss_pred             HcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcc-CCeEEEE
Confidence            33456788888899999999999999999888763 2455543

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=97.96  E-value=0.00032  Score=49.23  Aligned_cols=37  Identities=14%  Similarity=0.040  Sum_probs=29.8

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR   50 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~   50 (217)
                      ..+..|.+|+..-||+|....+.+.++.++|+   ++.+.
T Consensus        24 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~   60 (136)
T 1zzo_A           24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP---EVTFV   60 (136)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEE
T ss_pred             CCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC---CeEEE
Confidence            45677888889999999999999999988775   45544

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.94  E-value=0.00015  Score=52.46  Aligned_cols=40  Identities=15%  Similarity=0.183  Sum_probs=31.6

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEE
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRW   51 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~   51 (217)
                      ..++.|.+|+..-||+|....+.+.++.++|+. .++.+..
T Consensus        27 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~vv~   66 (153)
T 2l5o_A           27 QGKVTLINFWFPSCPGCVSEMPKIIKTANDYKN-KNFQVLA   66 (153)
T ss_dssp             TTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGG-TTEEEEE
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhcc-CCeEEEE
Confidence            456788888899999999999999999888863 2455543

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=97.94  E-value=0.00037  Score=50.68  Aligned_cols=43  Identities=12%  Similarity=0.147  Sum_probs=32.7

Q ss_pred             cCCcceEEEEEecccCchhhh-hHHHHHHHHHhcCCCCceeEEEe
Q 027910            9 AGKKLIRIDVSSDTVCPWCFV-GKRNLDKAIASSKDQYDFEIRWH   52 (217)
Q Consensus         9 ~~~~~v~i~~y~D~~CP~cy~-~~~~l~~~~~~~~~~~~v~v~~~   52 (217)
                      .-..++.|..|+..-||.|.. ..+.|.++.++|+++ ++.+...
T Consensus        27 ~~~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~-~v~~v~v   70 (160)
T 3lor_A           27 DLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDES-QVQVIGL   70 (160)
T ss_dssp             HHTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTT-TEEEEEE
T ss_pred             HhCCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcC-CcEEEEE
Confidence            334567788888889999999 599999999999743 4665543

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=97.89  E-value=0.00052  Score=48.77  Aligned_cols=40  Identities=13%  Similarity=0.030  Sum_probs=31.9

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEE
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRW   51 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~   51 (217)
                      ..+..|.+|+..-||+|....+.+.++.++|+. .++.+..
T Consensus        33 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~v~   72 (145)
T 3erw_A           33 KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPS-DSVKLVT   72 (145)
T ss_dssp             TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCC-SSEEEEE
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCC-CCEEEEE
Confidence            566778888899999999999999999998873 2455543

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=97.87  E-value=0.00035  Score=51.02  Aligned_cols=39  Identities=18%  Similarity=0.103  Sum_probs=31.4

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR   50 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~   50 (217)
                      ..++.|.+|+..-||+|....+.+.++.++|++ .++.+.
T Consensus        33 ~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~-~~v~~v   71 (165)
T 3or5_A           33 KGKAYIVNFFATWCPPCRSEIPDMVQVQKTWAS-RGFTFV   71 (165)
T ss_dssp             TTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTT-TTEEEE
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhcc-CCeEEE
Confidence            456778888899999999999999999998874 345544

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=97.84  E-value=0.00093  Score=48.23  Aligned_cols=45  Identities=20%  Similarity=0.070  Sum_probs=33.9

Q ss_pred             CcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEE
Q 027910            6 SSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRW   51 (217)
Q Consensus         6 ~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~   51 (217)
                      +...-..++.|.+|+..-||.|-...+.|.++.++|.. .++.+..
T Consensus        18 ~l~~~~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~-~~v~vv~   62 (151)
T 3raz_A           18 SLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKK-GSVDMVG   62 (151)
T ss_dssp             CGGGCCSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCT-TTEEEEE
T ss_pred             cHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhcc-CCeEEEE
Confidence            33444567888888899999999999999999988853 3455543

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=97.83  E-value=0.00034  Score=49.03  Aligned_cols=39  Identities=15%  Similarity=0.097  Sum_probs=31.1

Q ss_pred             HHHHhCCCCeecEEEE---CCee--eecCCCCHHHHHHHHHHHh
Q 027910          178 LKKYSANISGVPHFVL---NGKH--ELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       178 ~~a~~~gv~g~Pt~vv---~g~~--~~~G~~~~~~l~~~i~~~~  216 (217)
                      +.+.+.||.|+||+++   +|+.  .+.|..+.+.|.+.|++..
T Consensus        73 ~~~~~~~v~~~Pt~~~~~~~G~~~~~~~G~~~~~~l~~~l~~~~  116 (126)
T 2l57_A           73 DLAYKYDANIVPTTVFLDKEGNKFYVHQGLMRKNNIETILNSLG  116 (126)
T ss_dssp             HHHHHTTCCSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHHHC
T ss_pred             HHHHHcCCcceeEEEEECCCCCEEEEecCCCCHHHHHHHHHHHh
Confidence            3456789999999988   6763  3579999999999998763

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=97.83  E-value=0.00057  Score=47.80  Aligned_cols=42  Identities=17%  Similarity=0.140  Sum_probs=31.8

Q ss_pred             cccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910            7 SSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR   50 (217)
Q Consensus         7 ~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~   50 (217)
                      ...-..+..|.+|+..-||+|....+.+.++.++++.  ++.+.
T Consensus        17 l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~v   58 (138)
T 4evm_A           17 LSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGD--DYVVL   58 (138)
T ss_dssp             GGGGTTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTT--TEEEE
T ss_pred             HHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCC--CcEEE
Confidence            3334557788888899999999999999999887543  45544

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=97.82  E-value=0.00024  Score=51.23  Aligned_cols=40  Identities=15%  Similarity=-0.090  Sum_probs=31.7

Q ss_pred             CCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910           10 GKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR   50 (217)
Q Consensus        10 ~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~   50 (217)
                      -..+..|.+|+..-||+|....+.+.++.++|++ .++.+.
T Consensus        28 ~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~v   67 (152)
T 2lja_A           28 LKGKYIYIDVWATWCGPCRGELPALKELEEKYAG-KDIHFV   67 (152)
T ss_dssp             TTTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTT-SSEEEE
T ss_pred             cCCCEEEEEEECCcCHhHHHHhHHHHHHHHHhcc-CCeEEE
Confidence            3456788888899999999999999999988863 345554

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=97.82  E-value=0.00027  Score=47.81  Aligned_cols=39  Identities=18%  Similarity=0.355  Sum_probs=31.2

Q ss_pred             HHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHHhC
Q 027910          179 KKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAAN  217 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~~~  217 (217)
                      .+.+.|+.|+||+++  +|+.  .+.|..+.+.|.+.|+++.+
T Consensus        65 ~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~  107 (107)
T 1dby_A           65 VASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYLN  107 (107)
T ss_dssp             HHHHHTCCSSCEEEEESSSSEEEEEESCCCHHHHHHHHHHHCC
T ss_pred             HHHHCCCCcCCEEEEEeCCEEEEEEeCCCCHHHHHHHHHHHhC
Confidence            345678999999988  6763  35799999999999998754

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=97.78  E-value=0.00074  Score=47.45  Aligned_cols=37  Identities=14%  Similarity=0.189  Sum_probs=29.6

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR   50 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~   50 (217)
                      ..+..|.+|+..-||+|....+.+.++.++|+   ++.+.
T Consensus        23 ~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~   59 (136)
T 1lu4_A           23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP---AVTFV   59 (136)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEE
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHCC---CcEEE
Confidence            45677778889999999999999999988775   45544

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=97.76  E-value=0.00079  Score=48.04  Aligned_cols=41  Identities=10%  Similarity=-0.032  Sum_probs=32.1

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEE
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRW   51 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~   51 (217)
                      ..+..|.+|+..-||+|....+.+.++.++|+...++.+..
T Consensus        32 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~   72 (148)
T 3fkf_A           32 RNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLG   72 (148)
T ss_dssp             TTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEE
T ss_pred             CCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEE
Confidence            55788888889999999999999999999882233455543

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=97.73  E-value=0.00074  Score=45.67  Aligned_cols=37  Identities=19%  Similarity=0.275  Sum_probs=30.6

Q ss_pred             HHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHHh
Q 027910          180 KYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       180 a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~~  216 (217)
                      +.+.|+.|+||+++  +|+.  .+.|..+.+.|.+.|+++.
T Consensus        67 ~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  107 (108)
T 2trx_A           67 APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             HHHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             HHHcCCcccCEEEEEeCCEEEEEEecCCCHHHHHHHHHHhh
Confidence            45689999999998  7873  3579999999999998765

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=97.72  E-value=0.00037  Score=50.94  Aligned_cols=45  Identities=13%  Similarity=0.032  Sum_probs=34.1

Q ss_pred             cCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeec
Q 027910            9 AGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPF   54 (217)
Q Consensus         9 ~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~   54 (217)
                      .-..++.|.+|+..-||+|....+.|.++.++|.. .++.|....+
T Consensus        35 ~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~-~~~~vv~v~~   79 (164)
T 2h30_A           35 LKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKF-SSANLITVAS   79 (164)
T ss_dssp             CCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGG-TTSEEEEEEC
T ss_pred             HhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc-CCcEEEEEEc
Confidence            33456788888899999999999999999887753 3566665433

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=97.69  E-value=0.00072  Score=48.84  Aligned_cols=35  Identities=14%  Similarity=0.032  Sum_probs=26.9

Q ss_pred             cCcccCCcceEEEEEecccCchhhhhHHHHHHHHH
Q 027910            5 VSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIA   39 (217)
Q Consensus         5 ~~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~   39 (217)
                      ++...-..++.|.+|+...||+|....+.+.++.+
T Consensus        35 ~~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~l~~   69 (156)
T 1kng_A           35 LDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGK   69 (156)
T ss_dssp             BCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTT
T ss_pred             echHHhCCCEEEEEEEcccCHhHHHHHHHHHHHHh
Confidence            44444456778888899999999998888877654

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=97.68  E-value=0.00059  Score=52.99  Aligned_cols=39  Identities=23%  Similarity=0.371  Sum_probs=32.3

Q ss_pred             HHHHHhCCCCeecEEEECCeee-ecCCCCHHHHHHHHHHH
Q 027910          177 ELKKYSANISGVPHFVLNGKHE-LSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       177 ~~~a~~~gv~g~Pt~vv~g~~~-~~G~~~~~~l~~~i~~~  215 (217)
                      .+.+.+.||.|+||+++||+.. +.|..+.+.|.+.|++.
T Consensus       179 ~~l~~~~~v~~~Pt~~~~G~~~~~~G~~~~~~l~~~l~~~  218 (229)
T 2ywm_A          179 QDLAEQFQVVGVPKIVINKGVAEFVGAQPENAFLGYIMAV  218 (229)
T ss_dssp             HHHHHHTTCCSSSEEEEGGGTEEEESCCCHHHHHHHHHHH
T ss_pred             HHHHHHcCCcccCEEEECCEEEEeeCCCCHHHHHHHHHHH
Confidence            3467789999999999988732 68999999999888765

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=97.67  E-value=0.00054  Score=46.75  Aligned_cols=38  Identities=13%  Similarity=0.323  Sum_probs=30.7

Q ss_pred             HHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHHh
Q 027910          179 KKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~~  216 (217)
                      .+.+.|+.|+||+++  +|+.  .+.|..+.+.|.+.|+++.
T Consensus        69 ~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  110 (112)
T 1t00_A           69 TAAKYGVMSIPTLNVYQGGEVAKTIVGAKPKAAIVRDLEDFI  110 (112)
T ss_dssp             HHHHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHTHHHH
T ss_pred             HHHhCCCCcccEEEEEeCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence            345788999999988  7763  3679999999999998764

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=97.62  E-value=0.0019  Score=46.61  Aligned_cols=40  Identities=25%  Similarity=0.192  Sum_probs=31.9

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEE
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRW   51 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~   51 (217)
                      ..++.|.+|+..-||.|-...+.+.++.++|++ .++.+..
T Consensus        28 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~-~~~~vv~   67 (152)
T 2lrn_A           28 KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKD-KGFTIYG   67 (152)
T ss_dssp             TTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTT-TTEEEEE
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhcc-CCeEEEE
Confidence            456788888899999999999999999988874 3455543

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=97.59  E-value=0.0011  Score=47.61  Aligned_cols=42  Identities=12%  Similarity=-0.018  Sum_probs=32.8

Q ss_pred             cCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEE
Q 027910            9 AGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRW   51 (217)
Q Consensus         9 ~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~   51 (217)
                      .-..++.|.+|+..-||+|....+.|.++.++|+. .++.+..
T Consensus        25 ~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~v~   66 (152)
T 3gl3_A           25 DKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKA-KGFQVVA   66 (152)
T ss_dssp             GGTTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGG-GTEEEEE
T ss_pred             HhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhc-CCeEEEE
Confidence            33457788888899999999999999999998874 2355543

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=97.58  E-value=0.00088  Score=45.16  Aligned_cols=32  Identities=13%  Similarity=0.089  Sum_probs=27.6

Q ss_pred             cceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD   43 (217)
Q Consensus        12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~   43 (217)
                      .+..|.+|+..-||+|....+.+.++.++|++
T Consensus        21 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~   52 (109)
T 3tco_A           21 NKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKG   52 (109)
T ss_dssp             SSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT
T ss_pred             CCeEEEEEECCCCHHHHhhhHHHHHHHHHhCC
Confidence            56778888899999999999999998887753

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=97.55  E-value=0.0016  Score=43.72  Aligned_cols=33  Identities=9%  Similarity=-0.112  Sum_probs=27.9

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD   43 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~   43 (217)
                      ..+..|.+|+.+-||+|....+.+.++.++|++
T Consensus        19 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~   51 (107)
T 2i4a_A           19 ASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAG   51 (107)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEEEECCCChhHHHHhHHHHHHHHHhCC
Confidence            456788888899999999999999998887753

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=97.54  E-value=0.00095  Score=45.41  Aligned_cols=31  Identities=10%  Similarity=-0.054  Sum_probs=26.2

Q ss_pred             cceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (217)
Q Consensus        12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~   42 (217)
                      .+..|.+|+.+-||+|....+.+.++.++|+
T Consensus        24 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~   54 (112)
T 1ep7_A           24 HKPIVVDFTATWCGPCKMIAPLFETLSNDYA   54 (112)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHTT
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHHcC
Confidence            4567778888999999999999998888765

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=97.53  E-value=0.00067  Score=50.95  Aligned_cols=34  Identities=12%  Similarity=0.001  Sum_probs=29.2

Q ss_pred             CCcceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910           10 GKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD   43 (217)
Q Consensus        10 ~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~   43 (217)
                      -..++.|..|+..-||.|....+.|.++.++|.+
T Consensus        31 ~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~   64 (188)
T 2cvb_A           31 FHEPLLAVVFMCNHCPYVKGSIGELVALAERYRG   64 (188)
T ss_dssp             CCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTT
T ss_pred             hCCCEEEEEEECCCCccHHHHHHHHHHHHHHhhc
Confidence            3457788888899999999999999999998875

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=97.53  E-value=0.0016  Score=44.38  Aligned_cols=38  Identities=16%  Similarity=0.192  Sum_probs=30.7

Q ss_pred             HHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHHh
Q 027910          179 KKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~~  216 (217)
                      .+.+.|+.++||+++  +|+.  .+.|..+.+.|.+.|+++.
T Consensus        71 ~~~~~~v~~~Pt~~~~~~G~~~~~~~g~~~~~~l~~~l~~~l  112 (115)
T 1thx_A           71 TVKKYKVEGVPALRLVKGEQILDSTEGVISKDKLLSFLDTHL  112 (115)
T ss_dssp             HHHHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             HHHHcCCCceeEEEEEcCCEEEEEecCCCCHHHHHHHHHHHh
Confidence            355788999999988  7873  3579999999999998764

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=97.53  E-value=0.0009  Score=44.92  Aligned_cols=33  Identities=15%  Similarity=0.099  Sum_probs=28.1

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD   43 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~   43 (217)
                      ..+..+.+|+..-||+|....+.+.++.++|++
T Consensus        18 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~   50 (106)
T 3die_A           18 ESGVQLVDFWATACGPCKMIAPVLEELAADYEG   50 (106)
T ss_dssp             CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTT
T ss_pred             cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC
Confidence            456778888899999999999999999887764

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=97.52  E-value=0.0015  Score=45.24  Aligned_cols=38  Identities=16%  Similarity=0.192  Sum_probs=31.1

Q ss_pred             HHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHHh
Q 027910          179 KKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~~  216 (217)
                      .+.+.||.++||+++  +|+.  .+.|..+.+.|.+.|+++.
T Consensus        77 l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  118 (119)
T 1w4v_A           77 LAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLI  118 (119)
T ss_dssp             HHHHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             HHHHcCCCcccEEEEEeCCcEEEEEcCCCCHHHHHHHHHHHh
Confidence            456778999999988  7873  3579989999999998865

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=97.49  E-value=0.0013  Score=46.49  Aligned_cols=33  Identities=9%  Similarity=-0.165  Sum_probs=28.3

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD   43 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~   43 (217)
                      ..+..|.+|+..-||+|....+.+.++.++|++
T Consensus        39 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~   71 (128)
T 2o8v_B           39 ADGAILVDFWAEWCGPAKMIAPILDEIADEYQG   71 (128)
T ss_dssp             CSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTT
T ss_pred             cCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcC
Confidence            457788888999999999999999998887753

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=97.49  E-value=0.0016  Score=43.62  Aligned_cols=37  Identities=19%  Similarity=0.365  Sum_probs=30.0

Q ss_pred             HHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHH
Q 027910          179 KKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~  215 (217)
                      .+.+.|+.++||+++  +|+.  .+.|..+.+.|.+.|+++
T Consensus        64 ~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~l~~~  104 (105)
T 1fb6_A           64 IATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKY  104 (105)
T ss_dssp             HHHHTTCCSSSEEEEEETTEEEEEEEECCCHHHHHHHHHHH
T ss_pred             HHHhCCCCcccEEEEEeCCeEEEEEecCCCHHHHHHHHHhh
Confidence            456778999999988  7763  357999999999999875

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=97.48  E-value=0.0011  Score=45.38  Aligned_cols=31  Identities=10%  Similarity=-0.078  Sum_probs=26.6

Q ss_pred             cceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (217)
Q Consensus        12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~   42 (217)
                      .+..|.+|+.+-||+|....+.+.++.++|+
T Consensus        26 ~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~   56 (112)
T 1syr_A           26 NELVIVDFFAEWCGPCKRIAPFYEECSKTYT   56 (112)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHHCT
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHHcC
Confidence            4678888889999999999999999888764

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=97.47  E-value=0.00096  Score=44.82  Aligned_cols=37  Identities=24%  Similarity=0.363  Sum_probs=29.5

Q ss_pred             HHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHHh
Q 027910          180 KYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       180 a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~~  216 (217)
                      +.+.|+.|+||+++  +|+.  .+.|..+.+.|.+.|+++.
T Consensus        64 ~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  104 (105)
T 1nsw_A           64 TSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             HHHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHTTTTT
T ss_pred             HHHcCCccccEEEEEeCCeEEEEEecCCCHHHHHHHHHHHh
Confidence            45678999999988  7863  3579999999998887654

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=97.47  E-value=0.0017  Score=43.12  Aligned_cols=38  Identities=16%  Similarity=0.253  Sum_probs=30.8

Q ss_pred             HHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHHh
Q 027910          179 KKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~~  216 (217)
                      .+.+.|+.++||+++  +|+.  .+.|..+.+.+.+.|+++.
T Consensus        61 ~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l  102 (104)
T 2e0q_A           61 IAARYGVMSLPTVIFFKDGEPVDEIIGAVPREEIEIRIKNLL  102 (104)
T ss_dssp             HHHHTTCCSSCEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             HHHhCCccccCEEEEEECCeEhhhccCCCCHHHHHHHHHHHh
Confidence            455688999999998  7873  3579999999999998764

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=97.43  E-value=0.00022  Score=45.33  Aligned_cols=57  Identities=16%  Similarity=0.312  Sum_probs=38.8

Q ss_pred             HHHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCC-CHHHHHHHH
Q 027910          146 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQ-PPEVYLRAF  212 (217)
Q Consensus       146 ~~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~-~~~~l~~~i  212 (217)
                      ..|.+++++.+.+.....++          +.+.+.+.||.|+||+++||+....|.. +.+.|.+.|
T Consensus        19 ~~l~~~~~~~~~~~~~~~v~----------~~~~~~~~~v~~~Pt~~~~G~~~~~G~~~~~~~l~~~l   76 (77)
T 1ilo_A           19 KNAREAVKELGIDAEFEKIK----------EMDQILEAGLTALPGLAVDGELKIMGRVASKEEIKKIL   76 (77)
T ss_dssp             HHHHHHHHHTTCCEEEEEEC----------SHHHHHHHTCSSSSCEEETTEEEECSSCCCHHHHHHHC
T ss_pred             HHHHHHHHHcCCceEEEEec----------CHHHHHHCCCCcCCEEEECCEEEEcCCCCCHHHHHHHh
Confidence            34556666665432222333          3456678899999999999986566887 888887764

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=97.42  E-value=0.0019  Score=43.77  Aligned_cols=39  Identities=13%  Similarity=0.223  Sum_probs=31.1

Q ss_pred             HHHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHHh
Q 027910          178 LKKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       178 ~~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~~  216 (217)
                      ..+.+.||.++||+++  +|+.  .+.|..+.+.|.+.|+++.
T Consensus        67 ~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l  109 (111)
T 3gnj_A           67 TLFQRFSLKGVPQILYFKDGEYKGKMAGDVEDDEVEQMIADVL  109 (111)
T ss_dssp             HHHHHTTCCSSCEEEEEETTEEEEEEESSCCHHHHHHHHHHHH
T ss_pred             hHHHhcCCCcCCEEEEEECCEEEEEEeccCCHHHHHHHHHHHh
Confidence            3456778999999988  7863  3579999999999998764

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=97.41  E-value=0.004  Score=45.26  Aligned_cols=41  Identities=12%  Similarity=0.034  Sum_probs=30.8

Q ss_pred             CcceEEEEEecccCch-hhhhHHHHHHHHHhcCCC---CceeEEE
Q 027910           11 KKLIRIDVSSDTVCPW-CFVGKRNLDKAIASSKDQ---YDFEIRW   51 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~-cy~~~~~l~~~~~~~~~~---~~v~v~~   51 (217)
                      ..++.|.+|+-.-||. |-...+.|.++.++|+..   .++.+..
T Consensus        22 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~   66 (164)
T 2ggt_A           22 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLF   66 (164)
T ss_dssp             TTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEE
T ss_pred             CCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEE
Confidence            4567788888899997 999999999998877531   2455544

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=97.38  E-value=0.0022  Score=44.90  Aligned_cols=32  Identities=9%  Similarity=-0.008  Sum_probs=26.6

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~   42 (217)
                      ..+..|.+|+..-||+|....+.+.++.++|+
T Consensus        37 ~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~   68 (124)
T 1xfl_A           37 SKTLVVVDFTASWCGPCRFIAPFFADLAKKLP   68 (124)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS
T ss_pred             cCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC
Confidence            35677888888999999999999998888764

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=97.37  E-value=0.0016  Score=46.92  Aligned_cols=29  Identities=14%  Similarity=0.125  Sum_probs=25.8

Q ss_pred             ceEEEEEecccCchhhhhHHHHHHHHHhc
Q 027910           13 LIRIDVSSDTVCPWCFVGKRNLDKAIASS   41 (217)
Q Consensus        13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~   41 (217)
                      +..|.+|+..-||+|....+.|.++.++|
T Consensus        31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~   59 (154)
T 3ia1_A           31 KPAVIVFWASWCTVCKAEFPGLHRVAEET   59 (154)
T ss_dssp             SSEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEEcccChhHHHHHHHHHHHHHHc
Confidence            67788888999999999999999998876

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=97.37  E-value=0.0012  Score=47.67  Aligned_cols=39  Identities=21%  Similarity=0.146  Sum_probs=31.3

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR   50 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~   50 (217)
                      ..+..|.+|+..-||+|....+.+.++.++|++ .++.+.
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~v   65 (154)
T 3kcm_A           27 KGQVVIVNFWATWCPPCREEIPSMMRLNAAMAG-KPFRML   65 (154)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-SSEEEE
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcc-CCeEEE
Confidence            456778888899999999999999999998874 345544

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=97.35  E-value=0.0021  Score=43.11  Aligned_cols=37  Identities=22%  Similarity=0.432  Sum_probs=29.7

Q ss_pred             HHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHH
Q 027910          179 KKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~  215 (217)
                      .+.+.|+.++||+++  +|+.  .+.|..+.+.|.+.|+++
T Consensus        64 ~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~~~  104 (109)
T 2yzu_A           64 TAMRYRVMSIPTVILFKDGQPVEVLVGAQPKRNYQAKIEKH  104 (109)
T ss_dssp             HHHHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHTT
T ss_pred             HHHhCCCCcCCEEEEEeCCcEeeeEeCCCCHHHHHHHHHHH
Confidence            355788999999988  7873  357998999999998765

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=97.35  E-value=0.0024  Score=44.13  Aligned_cols=37  Identities=16%  Similarity=0.279  Sum_probs=29.4

Q ss_pred             HHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHHh
Q 027910          179 KKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~~  216 (217)
                      .+.+.|+.|+||+++  +|+.  .+.|.. .+.|.+.|+++.
T Consensus        79 ~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~-~~~l~~~l~~~l  119 (122)
T 2vlu_A           79 IAEQFSVEAMPTFLFMKEGDVKDRVVGAI-KEELTAKVGLHA  119 (122)
T ss_dssp             HHHHTTCCSSSEEEEEETTEEEEEEESSC-HHHHHHHHHHHH
T ss_pred             HHHHcCCCcccEEEEEeCCEEEEEEeCcC-HHHHHHHHHHHh
Confidence            355678999999988  7863  357888 999999998764

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=97.34  E-value=0.0015  Score=45.44  Aligned_cols=38  Identities=26%  Similarity=0.354  Sum_probs=29.5

Q ss_pred             HHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHHhC
Q 027910          179 KKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAAN  217 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~~~  217 (217)
                      .+.+.||.|+||+++  +|+.  .+.|.. .+.+.+.|+++.+
T Consensus        83 ~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~-~~~l~~~i~~~~~  124 (124)
T 1faa_A           83 LAKELGIRVVPTFKILKENSVVGEVTGAK-YDKLLEAIQAARS  124 (124)
T ss_dssp             HHHHHCCSSSSEEEEEETTEEEEEEESSC-HHHHHHHHHHHTC
T ss_pred             HHHHcCCCeeeEEEEEeCCcEEEEEcCCC-HHHHHHHHHHhhC
Confidence            345678999999988  7873  347876 8999999998764

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=97.33  E-value=0.002  Score=47.29  Aligned_cols=29  Identities=21%  Similarity=0.193  Sum_probs=24.2

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHH
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIA   39 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~   39 (217)
                      ..++.|.+|+..-||+|....+.+.++.+
T Consensus        50 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~   78 (168)
T 2b1k_A           50 QGKPVLLNVWATWCPTCRAEHQYLNQLSA   78 (168)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHH
Confidence            45667777888999999999999988776

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=97.32  E-value=0.00094  Score=47.51  Aligned_cols=44  Identities=11%  Similarity=0.050  Sum_probs=31.7

Q ss_pred             CcccCCcceEEEEEecccCchhhhhHHHHHH---HHHhcCCCCceeEE
Q 027910            6 SSSAGKKLIRIDVSSDTVCPWCFVGKRNLDK---AIASSKDQYDFEIR   50 (217)
Q Consensus         6 ~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~---~~~~~~~~~~v~v~   50 (217)
                      +...-..++.|.+|+..-||.|....+.+.+   +.++|++ .++.+.
T Consensus        21 ~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~-~~~~~v   67 (142)
T 3ewl_A           21 RMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVEN-GTLRVL   67 (142)
T ss_dssp             EGGGCCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHH-TSEEEE
T ss_pred             EhhhcCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhcc-CCeEEE
Confidence            3344456788888899999999999888877   7776653 345554

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=97.31  E-value=0.0041  Score=44.19  Aligned_cols=33  Identities=12%  Similarity=-0.053  Sum_probs=28.2

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD   43 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~   43 (217)
                      ..+..|.+|+.+-||+|....+.+.++.++|++
T Consensus        50 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~   82 (141)
T 3hxs_A           50 GDKPAIVDFYADWCGPCKMVAPILEELSKEYAG   82 (141)
T ss_dssp             CSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTT
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC
Confidence            457778888889999999999999999887764

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=97.31  E-value=0.016  Score=43.55  Aligned_cols=41  Identities=12%  Similarity=0.050  Sum_probs=31.9

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEe
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWH   52 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~   52 (217)
                      ..++.|.+|+..-||.|-...+.|.++.++|++ .+++|...
T Consensus        47 ~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~-~~v~vv~v   87 (190)
T 2vup_A           47 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKS-QGFTVLAF   87 (190)
T ss_dssp             TTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGG-GTCEEEEE
T ss_pred             CCCEEEEEEecCCCCccHHHHHHHHHHHHHHhc-CCeEEEEE
Confidence            456777788889999999999999999998874 24666543

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=97.30  E-value=0.0021  Score=49.59  Aligned_cols=40  Identities=28%  Similarity=0.444  Sum_probs=32.1

Q ss_pred             HHHHHhCCCCeecEEEE--CCe--eeecCCCCHHHHHHHHHHHh
Q 027910          177 ELKKYSANISGVPHFVL--NGK--HELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       177 ~~~a~~~gv~g~Pt~vv--~g~--~~~~G~~~~~~l~~~i~~~~  216 (217)
                      ...+.+.||.|+||+++  +|+  ..+.|..+.+.|.+.|++..
T Consensus       182 ~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  225 (226)
T 1a8l_A          182 PEWADQYNVMAVPKIVIQVNGEDRVEFEGAYPEKMFLEKLLSAL  225 (226)
T ss_dssp             HHHHHHTTCCSSCEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcccCeEEEEeCCceeEEEcCCCCHHHHHHHHHHhh
Confidence            34577899999999988  454  34689999999999998764

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=97.28  E-value=0.0027  Score=44.52  Aligned_cols=33  Identities=15%  Similarity=0.105  Sum_probs=28.4

Q ss_pred             CCcceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910           10 GKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (217)
Q Consensus        10 ~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~   42 (217)
                      ...++.|..|+..-||+|....+.+.++.++|+
T Consensus        40 ~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~   72 (128)
T 3ul3_B           40 MKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYG   72 (128)
T ss_dssp             SCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHG
T ss_pred             ccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhc
Confidence            456788888889999999999999999888765

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=97.27  E-value=0.0022  Score=43.62  Aligned_cols=31  Identities=6%  Similarity=-0.200  Sum_probs=26.0

Q ss_pred             cceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (217)
Q Consensus        12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~   42 (217)
                      .+..|..|+.+-||+|....+.+.++.++|+
T Consensus        24 ~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~   54 (111)
T 2pu9_C           24 DKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL   54 (111)
T ss_dssp             TSCEEEEEECTTCHHHHHHHHHHHHHHHHCT
T ss_pred             CCEEEEEEECCcCHhHHHHCHHHHHHHHHCC
Confidence            4567778888999999999999998888765

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=97.26  E-value=0.0022  Score=43.78  Aligned_cols=37  Identities=22%  Similarity=0.275  Sum_probs=29.7

Q ss_pred             HHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHH
Q 027910          179 KKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~  215 (217)
                      .+.+.|+.++||+++  +|+.  .+.|..+.+.|.+.|++.
T Consensus        64 l~~~~~v~~~Pt~~~~~~G~~v~~~~G~~~~~~l~~~~~~~  104 (110)
T 2l6c_A           64 LMKELGFERVPTLVFIRDGKVAKVFSGIMNPRELQALYASI  104 (110)
T ss_dssp             HHHHTTCCSSCEEEEEESSSEEEEEESCCCHHHHHHHHHTC
T ss_pred             HHHHcCCcccCEEEEEECCEEEEEEcCCCCHHHHHHHHHHH
Confidence            455779999999998  8873  346999999999988753

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=97.23  E-value=0.0012  Score=47.05  Aligned_cols=45  Identities=11%  Similarity=0.028  Sum_probs=34.1

Q ss_pred             CcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEE
Q 027910            6 SSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRW   51 (217)
Q Consensus         6 ~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~   51 (217)
                      +...-..++.|.+|+..-||+|....+.+.++.++|+++ ++.+..
T Consensus        25 ~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~v~   69 (148)
T 3hcz_A           25 YLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAK-GIQVYA   69 (148)
T ss_dssp             CGGGCCCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGG-TEEEEE
T ss_pred             EhHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccC-CEEEEE
Confidence            333445578888888999999999999999999988742 455543

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=97.22  E-value=0.0033  Score=44.88  Aligned_cols=32  Identities=13%  Similarity=0.225  Sum_probs=27.6

Q ss_pred             cceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD   43 (217)
Q Consensus        12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~   43 (217)
                      .+..|.+|+.+-||+|....+.+.++.++|++
T Consensus        24 ~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~   55 (140)
T 3hz4_A           24 KKPVVVMFYSPACPYCKAMEPYFEEYAKEYGS   55 (140)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCcEEEEEECCCChhHHHHHHHHHHHHHHhCC
Confidence            56778888899999999999999999887764

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=97.20  E-value=0.0042  Score=44.24  Aligned_cols=46  Identities=4%  Similarity=-0.200  Sum_probs=34.5

Q ss_pred             cCcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEE
Q 027910            5 VSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRW   51 (217)
Q Consensus         5 ~~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~   51 (217)
                      ++...-..++.|..|+-.-||.|....+.|.++.++|++. ++.+..
T Consensus        25 ~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~vv~   70 (143)
T 4fo5_A           25 ASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPD-KIAMCS   70 (143)
T ss_dssp             CCSCCSSCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTT-TEEEEE
T ss_pred             EEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcC-CEEEEE
Confidence            3444445577888888899999999999999999888743 455543

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=97.19  E-value=0.016  Score=41.40  Aligned_cols=41  Identities=7%  Similarity=-0.208  Sum_probs=31.5

Q ss_pred             CcceEEEEEecccCch--hhhhHHHHHHHHHhcCCCCceeEEE
Q 027910           11 KKLIRIDVSSDTVCPW--CFVGKRNLDKAIASSKDQYDFEIRW   51 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~--cy~~~~~l~~~~~~~~~~~~v~v~~   51 (217)
                      ..++.|..|+-.-||.  |-...+.|.++.++|....++.+..
T Consensus        32 ~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~   74 (150)
T 3fw2_A           32 KQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLG   74 (150)
T ss_dssp             TTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEE
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEE
Confidence            4567778888899999  9999999999999882233455543

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=97.17  E-value=0.0062  Score=41.52  Aligned_cols=36  Identities=14%  Similarity=0.245  Sum_probs=29.3

Q ss_pred             HHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHH
Q 027910          180 KYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       180 a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~  215 (217)
                      +.+.||.++||+++  +|+.  .+.|..+.+.|.+.|++.
T Consensus        64 ~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~  103 (112)
T 2voc_A           64 AGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNKH  103 (112)
T ss_dssp             HHHTTCCSBSEEEEEETTEEEEEEESCCCHHHHHHHHHTT
T ss_pred             HHHcCCCcccEEEEEeCCEEEEEEeCCCCHHHHHHHHHHH
Confidence            45678999999988  8873  357999999999988753

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=97.13  E-value=0.0084  Score=43.74  Aligned_cols=38  Identities=21%  Similarity=0.429  Sum_probs=31.2

Q ss_pred             HHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHHh
Q 027910          179 KKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~~  216 (217)
                      .+.+.||.++||+++  +|+.  .+.|..+.+.|.+.|++..
T Consensus       110 l~~~~~i~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  151 (155)
T 2ppt_A          110 VAGRHRIQGIPAFILFHKGRELARAAGARPASELVGFVRGKL  151 (155)
T ss_dssp             HHHHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             HHHHcCCCcCCEEEEEeCCeEEEEecCCCCHHHHHHHHHHHh
Confidence            456789999999988  7873  3689999999999998764

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=97.13  E-value=0.0048  Score=41.50  Aligned_cols=32  Identities=13%  Similarity=0.200  Sum_probs=27.0

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~   42 (217)
                      ..+..+..|+.+-||.|....+.+.++.++|+
T Consensus        17 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~   48 (105)
T 4euy_A           17 EQQLVLLFIKTENCGVCDVMLRKVNYVLENYN   48 (105)
T ss_dssp             CSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT
T ss_pred             cCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC
Confidence            45677888888999999999999999888663

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=97.11  E-value=0.0055  Score=45.59  Aligned_cols=34  Identities=21%  Similarity=0.201  Sum_probs=26.3

Q ss_pred             CcccCCcceEEEEEecccCchhhhhHHHHHHHHH
Q 027910            6 SSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIA   39 (217)
Q Consensus         6 ~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~   39 (217)
                      +...-..++.|.+|+..-||+|-...+.|.++.+
T Consensus        52 ~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~   85 (176)
T 3kh7_A           52 TEADLKGKPALVNVWGTWCPSCRVEHPELTRLAE   85 (176)
T ss_dssp             EGGGGCSSCEEEEEECTTCHHHHHHHHHHHHHHH
T ss_pred             cHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHH
Confidence            3333445677888889999999999999988876

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=97.10  E-value=0.0074  Score=40.60  Aligned_cols=37  Identities=27%  Similarity=0.374  Sum_probs=29.6

Q ss_pred             HHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHH
Q 027910          179 KKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~  215 (217)
                      .+.+.||.++||+++  +|+.  .+.|..+.+.|.+.|++.
T Consensus        70 l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~~~  110 (111)
T 3uvt_A           70 ICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFVLSQ  110 (111)
T ss_dssp             HHHHTTCCSSSEEEEEETTEEEEEECSCCSHHHHHHHHHHH
T ss_pred             HHHhcCCCcccEEEEEeCCcEEEeccCCcCHHHHHHHHHhc
Confidence            345679999999988  7763  457999999999998864

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=97.09  E-value=0.0066  Score=41.43  Aligned_cols=31  Identities=13%  Similarity=-0.030  Sum_probs=25.7

Q ss_pred             cceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (217)
Q Consensus        12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~   42 (217)
                      .+..|.+|+..-||+|....+.+.++.++|+
T Consensus        28 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~   58 (118)
T 2vm1_A           28 GKLVIIDFTASWCGPCRVIAPVFAEYAKKFP   58 (118)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHCT
T ss_pred             CCEEEEEEECCCCHhHHHHhHHHHHHHHHCC
Confidence            4567788888999999999999988887664

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=97.02  E-value=0.014  Score=42.99  Aligned_cols=45  Identities=18%  Similarity=0.133  Sum_probs=33.0

Q ss_pred             CcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEe
Q 027910            6 SSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWH   52 (217)
Q Consensus         6 ~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~   52 (217)
                      +...-..++.|..|+..-||.|- ..+.|.++.++|++ .++.|...
T Consensus        26 ~l~~~~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~-~~v~vv~v   70 (171)
T 3cmi_A           26 PFDQLKGKVVLIVNVASKCGFTP-QYKELEALYKRYKD-EGFTIIGF   70 (171)
T ss_dssp             CGGGGTTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGG-GTEEEEEE
T ss_pred             cHHHcCCCEEEEEEEecCCCcch-hHHHHHHHHHHhcc-CCeEEEEE
Confidence            33333456778888889999999 99999999998874 24555443

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=97.02  E-value=0.011  Score=42.01  Aligned_cols=38  Identities=21%  Similarity=0.295  Sum_probs=30.6

Q ss_pred             HHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHHh
Q 027910          179 KKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~~  216 (217)
                      .+.+.|+.++||+++  +|+.  .+.|..+.+.|.+.|+++.
T Consensus        96 l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~i~~~l  137 (140)
T 1v98_A           96 LAARYGVRSVPTLVLFRRGAPVATWVGASPRRVLEERLRPYL  137 (140)
T ss_dssp             HHHHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             HHHHCCCCccCEEEEEeCCcEEEEEeCCCCHHHHHHHHHHHH
Confidence            455678999999988  7873  3579999999999998764

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=97.01  E-value=0.014  Score=43.29  Aligned_cols=36  Identities=14%  Similarity=0.055  Sum_probs=29.4

Q ss_pred             ccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910            8 SAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD   43 (217)
Q Consensus         8 ~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~   43 (217)
                      ..-..++.|.+|+..-||+|....+.|.++.++|++
T Consensus        55 ~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~   90 (183)
T 3lwa_A           55 SDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQA   90 (183)
T ss_dssp             GGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHh
Confidence            333457788888889999999999999999888764

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=97.00  E-value=0.012  Score=49.06  Aligned_cols=44  Identities=9%  Similarity=-0.037  Sum_probs=33.0

Q ss_pred             CcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910            6 SSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR   50 (217)
Q Consensus         6 ~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~   50 (217)
                      +...-..++.|..|+..-||.|-...+.|.++.++|++ .++.|.
T Consensus        76 sLsdl~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~-~~v~vi  119 (352)
T 2hyx_A           76 DLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKD-SGLAVI  119 (352)
T ss_dssp             CGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG-GTEEEE
T ss_pred             cHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHhhc-CCeEEE
Confidence            33334456778888889999999999999999998864 245554

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=96.99  E-value=0.011  Score=41.87  Aligned_cols=33  Identities=15%  Similarity=-0.014  Sum_probs=27.5

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD   43 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~   43 (217)
                      ..+..|.+|+..-||+|....+.+.++.++|++
T Consensus        37 ~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~   69 (136)
T 2l5l_A           37 GDKPAIVDFYADWCGPCKMVAPILDELAKEYDG   69 (136)
T ss_dssp             CSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTT
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcC
Confidence            346778888889999999999999988887753

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=96.97  E-value=0.023  Score=41.38  Aligned_cols=44  Identities=11%  Similarity=0.008  Sum_probs=32.9

Q ss_pred             cCCcceEEEEEecccCch-hhhhHHHHHHHHHhcCCC---CceeEEEe
Q 027910            9 AGKKLIRIDVSSDTVCPW-CFVGKRNLDKAIASSKDQ---YDFEIRWH   52 (217)
Q Consensus         9 ~~~~~v~i~~y~D~~CP~-cy~~~~~l~~~~~~~~~~---~~v~v~~~   52 (217)
                      .-..++.|.+|+-.-||. |-...+.|.++.++|...   .++++...
T Consensus        23 ~~~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~i   70 (171)
T 2rli_A           23 DFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFI   70 (171)
T ss_dssp             TTTTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEE
T ss_pred             HhCCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEE
Confidence            334578888888899998 999999999998887521   24665543

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=96.95  E-value=0.0027  Score=45.14  Aligned_cols=47  Identities=19%  Similarity=0.314  Sum_probs=37.3

Q ss_pred             chhHHHHHHHHHhCCCCeecEEEE--CCe--eeecCCCCHHHHHHHHHHHh
Q 027910          170 GLNEVHEELKKYSANISGVPHFVL--NGK--HELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       170 ~~~~~~~~~~a~~~gv~g~Pt~vv--~g~--~~~~G~~~~~~l~~~i~~~~  216 (217)
                      ...+.++.+.+.+.||.|+||+++  +|+  ..+.|..+.+.+...|+++.
T Consensus        75 ~~~~d~~~~l~~~~~v~~~Pt~~~~~~G~~v~~~~G~~~~~~~~~~i~~~~  125 (135)
T 3emx_A           75 ERELSAARLEMNKAGVEGTPTLVFYKEGRIVDKLVGATPWSLKVEKAREIY  125 (135)
T ss_dssp             HHHHHHHHHHHHHHTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHC
T ss_pred             hhhhhhhHHHHHHcCCceeCeEEEEcCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence            344556667788999999999988  576  34689999999999998764

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=96.91  E-value=0.0073  Score=41.57  Aligned_cols=36  Identities=19%  Similarity=0.355  Sum_probs=28.4

Q ss_pred             HHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHH
Q 027910          179 KKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~  215 (217)
                      .+.+.||.++||+++  +|+.  .+.|. +.+.|.+.|+++
T Consensus        76 l~~~~~v~~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~l~~~  115 (116)
T 3qfa_C           76 VASECEVKSMPTFQFFKKGQKVGEFSGA-NKEKLEATINEL  115 (116)
T ss_dssp             HHHHTTCCSSSEEEEESSSSEEEEEESC-CHHHHHHHHHHH
T ss_pred             HHHHcCCccccEEEEEeCCeEEEEEcCC-CHHHHHHHHHHh
Confidence            346678999999988  6753  35788 999999999875

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=96.91  E-value=0.003  Score=47.53  Aligned_cols=36  Identities=8%  Similarity=0.030  Sum_probs=29.2

Q ss_pred             eEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910           14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR   50 (217)
Q Consensus        14 v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~   50 (217)
                      ..|.+|+..-||.|-...+.|.++.++|++ .++.+.
T Consensus        48 ~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~-~~v~vv   83 (196)
T 2ywi_A           48 ATVIMFICNHCPFVKHVQHELVRLANDYMP-KGVSFV   83 (196)
T ss_dssp             EEEEEECCSSCHHHHHHHHHHHHHHHHHGG-GTCEEE
T ss_pred             eEEEEEeCCCCccHHHHHHHHHHHHHHHHh-CCcEEE
Confidence            478888899999999999999999988874 245554

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=96.88  E-value=0.012  Score=41.26  Aligned_cols=32  Identities=13%  Similarity=0.194  Sum_probs=26.2

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~   42 (217)
                      ..+..|.+|+.+-||+|....+.+.++.++|+
T Consensus        36 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~   67 (125)
T 1r26_A           36 EDILTVAWFTAVWCGPCKTIERPMEKIAYEFP   67 (125)
T ss_dssp             SSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT
T ss_pred             cCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC
Confidence            34667788888999999999999998887663

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=96.84  E-value=0.017  Score=41.40  Aligned_cols=33  Identities=12%  Similarity=-0.039  Sum_probs=27.5

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD   43 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~   43 (217)
                      ..+..|..|+..-||+|....+.+.++.++|.+
T Consensus        54 ~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~   86 (148)
T 3p2a_A           54 DDLPMVIDFWAPWCGPCRSFAPIFAETAAERAG   86 (148)
T ss_dssp             CSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTT
T ss_pred             cCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCC
Confidence            456678888889999999999999998887753

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=96.83  E-value=0.014  Score=39.44  Aligned_cols=32  Identities=6%  Similarity=-0.044  Sum_probs=24.4

Q ss_pred             CCcceEEEEEecccCchhhhhHHHHHHHHHhc
Q 027910           10 GKKLIRIDVSSDTVCPWCFVGKRNLDKAIASS   41 (217)
Q Consensus        10 ~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~   41 (217)
                      ...+..|..|+..-||+|....+.+.++.++|
T Consensus        19 ~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~   50 (112)
T 3d6i_A           19 AGDKLIVLYFHTSWAEPCKALKQVFEAISNEP   50 (112)
T ss_dssp             TTTCCEEEEEECCC--CHHHHHHHHHHHHHCG
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc
Confidence            34567788888899999999999999887764

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=96.77  E-value=0.034  Score=40.38  Aligned_cols=40  Identities=20%  Similarity=0.193  Sum_probs=30.9

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEE
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRW   51 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~   51 (217)
                      ..++.|..|+-.-||.|-...+.|.++.++|+++ ++.|..
T Consensus        31 ~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~-~~~vv~   70 (170)
T 2p5q_A           31 KGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQ-GLEILA   70 (170)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEE
T ss_pred             CCCEEEEEEEeccCCccHHHHHHHHHHHHHhccC-CEEEEE
Confidence            4466777777799999999999999999988742 455543

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=96.67  E-value=0.021  Score=41.33  Aligned_cols=30  Identities=10%  Similarity=-0.009  Sum_probs=25.3

Q ss_pred             cceEEEEEecccCchhhhhHHHHHHHHHhc
Q 027910           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASS   41 (217)
Q Consensus        12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~   41 (217)
                      .+..|..|+.+-||+|....+.+.++.++|
T Consensus        32 ~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~   61 (153)
T 2wz9_A           32 KSLLVVHFWAPWAPQCAQMNEVMAELAKEL   61 (153)
T ss_dssp             TSCEEEEEECTTCHHHHHHHHHHHHHHHHC
T ss_pred             CCeEEEEEECCCCHhHHHHHHHHHHHHHHc
Confidence            566788888899999999999998888765

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=96.67  E-value=0.032  Score=42.91  Aligned_cols=38  Identities=11%  Similarity=0.112  Sum_probs=30.5

Q ss_pred             ceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEE
Q 027910           13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRW   51 (217)
Q Consensus        13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~   51 (217)
                      ++.|.+|+-.-||.|-...+.|.++.++|++ .++.|..
T Consensus        60 ~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~-~~v~vv~   97 (218)
T 3u5r_E           60 PALLVAFISNRCPFVVLIREALAKFAGDYAG-QGLAVVA   97 (218)
T ss_dssp             SEEEEEECCSSCHHHHTTHHHHHHHHHHHTT-TTEEEEE
T ss_pred             CeEEEEEECCCCccHHHHHHHHHHHHHHHHh-CCcEEEE
Confidence            3577888889999999999999999999874 3455543

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=96.65  E-value=0.0032  Score=45.54  Aligned_cols=66  Identities=11%  Similarity=-0.033  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHHh
Q 027910          145 KEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       145 ~~~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~~  216 (217)
                      ..+|.+++++.+=..-.+      ++-.+.++.+.|.+.||.++|||++  ||+.  .+.|..+.+.|++.|++..
T Consensus        55 aPvleela~e~~g~~v~~------~KVdvDe~~~lA~~ygV~sIPTlilFk~G~~v~~~~G~~~k~~l~~~i~~~l  124 (140)
T 2qgv_A           55 PVMIGELLHEFPDYTWQV------AIADLEQSEAIGDRFGAFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLV  124 (140)
T ss_dssp             HHHHHHHHTTCTTSCCEE------EECCHHHHHHHHHHHTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHcCCCeEEE------EEEECCCCHHHHHHcCCccCCEEEEEECCEEEEEEecCCCHHHHHHHHHHHh
Confidence            456677776652110112      2334667788899999999999988  7874  4689999999999998654

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=96.62  E-value=0.0089  Score=42.42  Aligned_cols=42  Identities=7%  Similarity=-0.042  Sum_probs=32.4

Q ss_pred             cCCcceEEEEEecccCchhhhhHHHHHH---HHHhcCCCCceeEEE
Q 027910            9 AGKKLIRIDVSSDTVCPWCFVGKRNLDK---AIASSKDQYDFEIRW   51 (217)
Q Consensus         9 ~~~~~v~i~~y~D~~CP~cy~~~~~l~~---~~~~~~~~~~v~v~~   51 (217)
                      .-..+..|.+|+..-||.|....+.|.+   +.++|++ .++.+..
T Consensus        28 ~~~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~-~~~~vi~   72 (142)
T 3eur_A           28 QFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAA-KKLKVLS   72 (142)
T ss_dssp             TCCCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHT-TSEEEEE
T ss_pred             HcCCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhcc-CCeEEEE
Confidence            3345778888889999999999999999   8888764 3565543

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=96.55  E-value=0.0032  Score=43.07  Aligned_cols=34  Identities=24%  Similarity=0.370  Sum_probs=29.0

Q ss_pred             HHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHH
Q 027910          179 KKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQ  213 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~  213 (217)
                      .+.+.||.|+|||+|+|+ .+.|..+.+.|.+.+.
T Consensus        58 l~~~~~V~~~PT~~i~G~-~~~G~~~~~~l~~~~~   91 (106)
T 3kp8_A           58 ECTEAGITSYPTWIINGR-TYTGVRSLEALAVASG   91 (106)
T ss_dssp             HHHHTTCCSSSEEEETTE-EEESCCCHHHHHHHHT
T ss_pred             HHHHcCCeEeCEEEECCE-EecCCCCHHHHHHHhC
Confidence            456789999999999998 5899999999888763

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=96.44  E-value=0.013  Score=38.43  Aligned_cols=62  Identities=18%  Similarity=0.176  Sum_probs=37.3

Q ss_pred             HHHHHHHcCCCcccccccC--cccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHH
Q 027910          148 LVECARKVGVEGAAEFLDD--PNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQ  213 (217)
Q Consensus       148 L~~ia~~~Gld~~~~~l~~--~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~  213 (217)
                      +..++++.|++-+...++.  ++-...+.  .+.....|+.++|++++||+ .+.|. +.+.|.+.|+
T Consensus        28 ~~~~L~~~gi~~~~~~v~~~~~~~~~~~~--~~l~~~~g~~~vP~l~~~g~-~i~G~-~~~~l~~~l~   91 (92)
T 3ic4_A           28 TLEFLKREGVDFEVIWIDKLEGEERKKVI--EKVHSISGSYSVPVVVKGDK-HVLGY-NEEKLKELIR   91 (92)
T ss_dssp             HHHHHHHHTCCCEEEEGGGCCHHHHHHHH--HHHHHHHSSSCSCEEEETTE-EEESC-CHHHHHHHHH
T ss_pred             HHHHHHHcCCCcEEEEeeeCCccchHHHH--HHHHHhcCCCCcCEEEECCE-EEeCC-CHHHHHHHhc
Confidence            4455566677655442221  11111111  22334568899999999998 56777 7888888774

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=96.36  E-value=0.037  Score=44.13  Aligned_cols=33  Identities=9%  Similarity=-0.080  Sum_probs=27.1

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD   43 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~   43 (217)
                      ..++.|..|+-+-||+|....+.+.++.++|++
T Consensus        25 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~   57 (287)
T 3qou_A           25 MTTPVLFYFWSERSQHCLQLTPILESLAAQYNG   57 (287)
T ss_dssp             TTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTS
T ss_pred             CCCeEEEEEECCCChHHHHHHHHHHHHHHHcCC
Confidence            356677777789999999999999999888764

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=96.25  E-value=0.063  Score=39.11  Aligned_cols=41  Identities=17%  Similarity=0.071  Sum_probs=30.6

Q ss_pred             CcceEEEEEecccCc-hhhhhHHHHHHHHHhcCCCC-ceeEEE
Q 027910           11 KKLIRIDVSSDTVCP-WCFVGKRNLDKAIASSKDQY-DFEIRW   51 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP-~cy~~~~~l~~~~~~~~~~~-~v~v~~   51 (217)
                      ..++.|..|+-.-|| .|-...+.|.++.++|+... +++|..
T Consensus        32 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~   74 (174)
T 1xzo_A           32 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIIS   74 (174)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEE
Confidence            446677788889999 99999999999888776432 255543

>3ktb_A Arsenical resistance operon trans-acting represso; alpha-beta-alpha sandwich, helix-turn-helix, structural GENO PSI-2; 2.10A {Bacteroides vulgatus}

Probab=96.21  E-value=0.024  Score=38.68  Aligned_cols=62  Identities=11%  Similarity=0.089  Sum_probs=41.9

Q ss_pred             HHHHcCCCcccc-cccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCC-CHHHHHHHH
Q 027910          151 CARKVGVEGAAE-FLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQ-PPEVYLRAF  212 (217)
Q Consensus       151 ia~~~Gld~~~~-~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~-~~~~l~~~i  212 (217)
                      .+++.|++.+++ ...+|..=..-..-.+...+.|+.++|.++|||+....|.. +.++|.+.+
T Consensus        38 ~lk~~Gi~V~RyNL~~~P~~F~~N~~V~~~L~~~G~~~LP~~~VDGevv~~G~yPt~eEl~~~l  101 (106)
T 3ktb_A           38 SLKKQGIIVTRHNLRDEPQVYVSNKTVNDFLQKHGADALPITLVDGEIAVSQTYPTTKQMSEWT  101 (106)
T ss_dssp             HHHHTTCCCEEEETTTCTTHHHHSHHHHHHHHTTCGGGCSEEEETTEEEECSSCCCHHHHHHHH
T ss_pred             HHHHCCCEEEEEccccChHHHhcCHHHHHHHHHcCcccCCEEEECCEEEEeccCCCHHHHHHHh
Confidence            345568988888 44455321111122344567999999999999997778864 578887765

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=96.17  E-value=0.0055  Score=42.83  Aligned_cols=37  Identities=16%  Similarity=0.250  Sum_probs=30.2

Q ss_pred             HHhCCCCeecEEEE--CCe--eeecCCCCHHHHHHHHHHHh
Q 027910          180 KYSANISGVPHFVL--NGK--HELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       180 a~~~gv~g~Pt~vv--~g~--~~~~G~~~~~~l~~~i~~~~  216 (217)
                      +...+|.|+|||++  +|+  ..+.|+.+.+.|.+.|+++.
T Consensus        69 a~~~~V~g~PT~i~f~~G~ev~Ri~G~~~~~~f~~~L~~~l  109 (116)
T 3dml_A           69 ELARPVTFTPTFVLMAGDVESGRLEGYPGEDFFWPMLARLI  109 (116)
T ss_dssp             BCSSCCCSSSEEEEEETTEEEEEEECCCCHHHHHHHHHHHH
T ss_pred             HHHCCCCCCCEEEEEECCEEEeeecCCCCHHHHHHHHHHHH
Confidence            34668999999988  676  35789999999999998763

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=96.16  E-value=0.0066  Score=43.70  Aligned_cols=64  Identities=11%  Similarity=0.015  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHH
Q 027910          145 KEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       145 ~~~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~  215 (217)
                      ..+|.+++++.+=. -.+      ++-.+.++.+.+.+.||.++|||++  ||+.  .+.|..+.+.|.+.|++.
T Consensus        54 aPvleela~e~~~~-v~~------~KVdvDe~~~la~~ygV~siPTlilFkdG~~v~~~vG~~~k~~l~~~l~~~  121 (137)
T 2qsi_A           54 AVVLPELINAFPGR-LVA------AEVAAEAERGLMARFGVAVCPSLAVVQPERTLGVIAKIQDWSSYLAQIGAM  121 (137)
T ss_dssp             HHHHHHHHHTSTTT-EEE------EEECGGGHHHHHHHHTCCSSSEEEEEECCEEEEEEESCCCHHHHHHHHHHH
T ss_pred             HhHHHHHHHHccCC-cEE------EEEECCCCHHHHHHcCCccCCEEEEEECCEEEEEEeCCCCHHHHHHHHHHH
Confidence            35677777765311 122      1223445677899999999999988  7874  468999999999988764

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=96.12  E-value=0.07  Score=39.46  Aligned_cols=41  Identities=17%  Similarity=0.059  Sum_probs=32.2

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEe
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWH   52 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~   52 (217)
                      ..++.|.+|+..-||.|-...+.|.++.++|+. .++.+...
T Consensus        59 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~-~~~~vv~v   99 (186)
T 1jfu_A           59 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSG-PNFEVVAI   99 (186)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCB-TTEEEEEE
T ss_pred             CCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhcc-CCcEEEEE
Confidence            456778888889999999999999999988873 35666543

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=96.10  E-value=0.17  Score=36.42  Aligned_cols=41  Identities=12%  Similarity=0.020  Sum_probs=31.2

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEe
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWH   52 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~   52 (217)
                      ..++.|..|+-.-||.|-...+.|.++.++|++ .++.+...
T Consensus        30 ~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~~~~vv~v   70 (169)
T 2v1m_A           30 RGHVCLIVNVACKCGATDKNYRQLQEMHTRLVG-KGLRILAF   70 (169)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG-GTEEEEEE
T ss_pred             CCCEEEEEEeeccCCchHHHHHHHHHHHHHhhc-CCeEEEEE
Confidence            446677777779999999999999999998874 34665543

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=96.06  E-value=0.013  Score=42.19  Aligned_cols=42  Identities=24%  Similarity=0.268  Sum_probs=32.9

Q ss_pred             HHHHHHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHHh
Q 027910          175 HEELKKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       175 ~~~~~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~~  216 (217)
                      ++.+.+.+.||.|+||+++  +|+.  .+.|..+.+.|.+.|++..
T Consensus        79 ~~~~la~~~~V~~iPT~~~fk~G~~v~~~~G~~~~~~l~~~i~~~l  124 (142)
T 2es7_A           79 QSEAIGDRFNVRRFPATLVFTDGKLRGALSGIHPWAELLTLMRSIV  124 (142)
T ss_dssp             HHHHHHHTTTCCSSSEEEEESCC----CEESCCCHHHHHHHHHHHH
T ss_pred             CCHHHHHhcCCCcCCeEEEEeCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence            4556778999999999988  6762  3579999999999998764

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=96.04  E-value=0.014  Score=36.36  Aligned_cols=58  Identities=12%  Similarity=0.047  Sum_probs=35.0

Q ss_pred             HHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHH
Q 027910          148 LVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQ  213 (217)
Q Consensus       148 L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~  213 (217)
                      +..+.++.|++-....++..   ..+.+   .....|+.++|++++||+ .+.|. +.+.+.+.|+
T Consensus        17 ~~~~l~~~~i~~~~~di~~~---~~~~~---~~~~~~~~~vP~l~~~g~-~~~g~-~~~~l~~~l~   74 (75)
T 1r7h_A           17 TKKALDRAGLAYNTVDISLD---DEARD---YVMALGYVQAPVVEVDGE-HWSGF-RPERIKQLQA   74 (75)
T ss_dssp             HHHHHHHTTCCCEEEETTTC---HHHHH---HHHHTTCBCCCEEEETTE-EEESC-CHHHHHHHHC
T ss_pred             HHHHHHHcCCCcEEEECCCC---HHHHH---HHHHcCCCccCEEEECCe-EEcCC-CHHHHHHHHh
Confidence            44455566776544333321   11111   224689999999999998 46676 5677777664

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=96.04  E-value=0.057  Score=39.14  Aligned_cols=35  Identities=14%  Similarity=0.009  Sum_probs=27.5

Q ss_pred             EEEEEe-cccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910           15 RIDVSS-DTVCPWCFVGKRNLDKAIASSKDQYDFEIR   50 (217)
Q Consensus        15 ~i~~y~-D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~   50 (217)
                      .|.+|+ ..-||.|-...+.|.++.++|++ .++.+.
T Consensus        32 vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~-~~v~vv   67 (161)
T 3drn_A           32 IVLYFYPKDDTPGSTREASAFRDNWDLLKD-YDVVVI   67 (161)
T ss_dssp             EEEEECSCTTCHHHHHHHHHHHHTHHHHHT-TCEEEE
T ss_pred             EEEEEEcCCCCCchHHHHHHHHHHHHHHHH-cCCEEE
Confidence            566666 99999999999999999988874 345554

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=95.94  E-value=0.03  Score=43.74  Aligned_cols=40  Identities=8%  Similarity=-0.056  Sum_probs=30.7

Q ss_pred             cceEEEEEecccCchhhhhHHHHHHHHHhcCCC-CceeEEE
Q 027910           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQ-YDFEIRW   51 (217)
Q Consensus        12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~-~~v~v~~   51 (217)
                      .+..|..|+..-||+|....+.+.++.++|++. ..+.+..
T Consensus        30 ~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~   70 (244)
T 3q6o_A           30 RSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAA   70 (244)
T ss_dssp             SSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEE
T ss_pred             CCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEE
Confidence            367788888899999999999999999887631 1355543

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=95.94  E-value=0.08  Score=39.21  Aligned_cols=40  Identities=13%  Similarity=0.131  Sum_probs=31.5

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEE
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRW   51 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~   51 (217)
                      ..++.|.+|+-.-||.|-...+.|.++.++|++ .++.|..
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~-~~v~vv~   87 (181)
T 2p31_A           48 RGSVSLVVNVASECGFTDQHYRALQQLQRDLGP-HHFNVLA   87 (181)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG-GTEEEEE
T ss_pred             CCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhc-CCEEEEE
Confidence            456778888888999999999999999998874 2455543

>3kgk_A Arsenical resistance operon trans-acting represso; alpha+beta, chaperone, DNA-binding, RE transcription, transcription regulation; 1.40A {Escherichia coli} PDB: 3mwh_A

Probab=95.88  E-value=0.027  Score=38.70  Aligned_cols=63  Identities=17%  Similarity=0.242  Sum_probs=42.1

Q ss_pred             HHHHHcCCCcccc-cccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCC-CHHHHHHHH
Q 027910          150 ECARKVGVEGAAE-FLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQ-PPEVYLRAF  212 (217)
Q Consensus       150 ~ia~~~Gld~~~~-~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~-~~~~l~~~i  212 (217)
                      +.+++.|++.+++ ...+|..=..-..-.+...+.|+.++|.++|||+..+.|.. +.++|.+.+
T Consensus        34 ~~lk~~Gi~V~RyNL~~~P~aF~~N~~V~~~L~~~G~~~LP~~~VDGevv~~G~yPt~eEl~~~l   98 (110)
T 3kgk_A           34 QWLKQSGVQIERFNLAQQPMSFVQNEKVKAFIEASGAEGLPLLLLDGETVMAGRYPKRAELARWF   98 (110)
T ss_dssp             HHHHHHTCCEEEEETTTCTTHHHHSHHHHHHHHHHCGGGCCEEEETTEEEEESSCCCHHHHHHHH
T ss_pred             HHHHHCCCeEEEEccccChHHHhcCHHHHHHHHHcCcccCCEEEECCEEEEeccCCCHHHHHHHh
Confidence            3445569998888 44445311111112344567899999999999997778864 578887765

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=95.88  E-value=0.0092  Score=40.62  Aligned_cols=37  Identities=24%  Similarity=0.375  Sum_probs=28.9

Q ss_pred             HHHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHH
Q 027910          178 LKKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       178 ~~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~  215 (217)
                      +.+.+.||.|+|||++  +|+.  .+.|. +.+.|.+.|++-
T Consensus        64 ~l~~~~~V~~~PT~~~~~~G~~v~~~~G~-~~~~l~~~i~k~  104 (105)
T 3zzx_A           64 DIAQDNQIACMPTFLFMKNGQKLDSLSGA-NYDKLLELVEKN  104 (105)
T ss_dssp             HHHHHTTCCBSSEEEEEETTEEEEEEESC-CHHHHHHHHHHH
T ss_pred             HHHHHcCCCeecEEEEEECCEEEEEEeCc-CHHHHHHHHHhc
Confidence            4567899999999988  6762  35785 788899988763

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=95.87  E-value=0.3  Score=35.97  Aligned_cols=45  Identities=13%  Similarity=0.009  Sum_probs=34.3

Q ss_pred             CcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEE
Q 027910            6 SSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRW   51 (217)
Q Consensus         6 ~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~   51 (217)
                      +...-..++.|.+|+-.-||.|-...+.|.++.++|++ .++.|..
T Consensus        32 ~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~-~~~~vi~   76 (180)
T 3kij_A           32 SLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGP-SHFSVLA   76 (180)
T ss_dssp             EGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTT-TSEEEEE
T ss_pred             cHHHcCCCEEEEEEEecCCCCcHHHHHHHHHHHHHhcc-CCeEEEE
Confidence            33333456888888889999999999999999999975 3455543

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=95.87  E-value=0.077  Score=39.58  Aligned_cols=49  Identities=14%  Similarity=0.072  Sum_probs=35.9

Q ss_pred             cCcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeec
Q 027910            5 VSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPF   54 (217)
Q Consensus         5 ~~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~   54 (217)
                      ++...-..++.|..|+-.-||.|-...+.|.++.++|+++ ++.|...++
T Consensus        39 ~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~-~~~vi~is~   87 (187)
T 3dwv_A           39 YNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQ-GFTVLAFPS   87 (187)
T ss_dssp             CCGGGGTTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGG-TCEEEEEEB
T ss_pred             eeHHHhCCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhC-CeEEEEEEC
Confidence            3333344567777788889999999999999999998753 566654433

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=95.83  E-value=0.014  Score=45.97  Aligned_cols=39  Identities=23%  Similarity=0.203  Sum_probs=33.6

Q ss_pred             HHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHHHHh
Q 027910          178 LKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       178 ~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~~~~  216 (217)
                      ..+.+.||.|+||+++||+..+.|..+.+.|.+.|++..
T Consensus       187 ~~~~~~~V~~vPt~~i~G~~~~~G~~~~~~l~~~l~~~~  225 (243)
T 2hls_A          187 DIADKYGVMSVPSIAINGYLVFVGVPYEEDFLDYVKSAA  225 (243)
T ss_dssp             HHHHHTTCCSSSEEEETTEEEEESCCCHHHHHHHHHHHH
T ss_pred             HHHHHcCCeeeCeEEECCEEEEeCCCCHHHHHHHHHHHh
Confidence            456688999999999999866789999999999988754

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=95.78  E-value=0.087  Score=40.06  Aligned_cols=37  Identities=11%  Similarity=0.160  Sum_probs=28.7

Q ss_pred             HHHhCCCCeecEEEE--CCe--eeecCCCCHHHHHHHHHHH
Q 027910          179 KKYSANISGVPHFVL--NGK--HELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~g~--~~~~G~~~~~~l~~~i~~~  215 (217)
                      .+...||.|+||+++  +|+  ..+.|..+.+.|.+.|++.
T Consensus       160 l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~i~~~  200 (210)
T 3apq_A          160 LCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQH  200 (210)
T ss_dssp             HHHHTTCCSSSEEEEECTTSCCEECCSCCCHHHHHHHHHHH
T ss_pred             HHHHcCCCcCCeEEEEECCCceeEecCCCCHHHHHHHHHHh
Confidence            344568999999988  665  2457888999999998865

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=95.58  E-value=0.037  Score=37.81  Aligned_cols=40  Identities=15%  Similarity=0.101  Sum_probs=30.4

Q ss_pred             HHHHHHHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHH
Q 027910          174 VHEELKKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQ  213 (217)
Q Consensus       174 ~~~~~~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~  213 (217)
                      ......+.+.||.|+||+++  +|+.  .+.|..+.+.|.+.|+
T Consensus        74 ~~~~~~~~~~~i~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~  117 (118)
T 1zma_A           74 NDLQAFRSRYGIPTVPGFVHITDGQINVRCDSSMSAQEIKDFAG  117 (118)
T ss_dssp             HHHHHHHHHHTCCSSCEEEEEETTEEEEECCTTCCHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCCCeEEEEECCEEEEEecCCCCHHHHHHHhh
Confidence            33445667899999999977  6763  3579989999888774

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=95.53  E-value=0.0075  Score=38.50  Aligned_cols=30  Identities=17%  Similarity=0.252  Sum_probs=23.1

Q ss_pred             hCCCCeecEEEECCeeeecCCCCHHHHHHHHH
Q 027910          182 SANISGVPHFVLNGKHELSGGQPPEVYLRAFQ  213 (217)
Q Consensus       182 ~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~  213 (217)
                      +.|+.++|+++++|+ .+.|. +.+.+.+.|+
T Consensus        45 ~~g~~~vP~~~~~g~-~~~g~-~~~~l~~~l~   74 (81)
T 1h75_A           45 AQGFRQLPVVIAGDL-SWSGF-RPDMINRLHP   74 (81)
T ss_dssp             HTTCCSSCEEEETTE-EEESC-CHHHHGGGSC
T ss_pred             HhCCCccCEEEECCE-EEecC-CHHHHHHHHh
Confidence            579999999999998 46675 5666766654

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=95.52  E-value=0.012  Score=40.42  Aligned_cols=57  Identities=19%  Similarity=-0.041  Sum_probs=37.5

Q ss_pred             HHHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeecEE--EECCeeeecCCCCHHHHHHHH
Q 027910          146 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHF--VLNGKHELSGGQPPEVYLRAF  212 (217)
Q Consensus       146 ~~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~--vv~g~~~~~G~~~~~~l~~~i  212 (217)
                      ..|.+++++.|++.....+++         +.+.+.+.|+. +|++  ++||+....|..+.+.|.+.|
T Consensus        48 ~~L~~l~~e~~i~~~~vDId~---------d~~l~~~ygv~-VP~l~~~~dG~~v~~g~~~~~~L~~~L  106 (107)
T 2fgx_A           48 ASLRVLQKKSWFELEVINIDG---------NEHLTRLYNDR-VPVLFAVNEDKELCHYFLDSDVIGAYL  106 (107)
T ss_dssp             HHHHHHHHHSCCCCEEEETTT---------CHHHHHHSTTS-CSEEEETTTTEEEECSSCCCHHHHHHH
T ss_pred             HHHHHHHHhcCCeEEEEECCC---------CHHHHHHhCCC-CceEEEEECCEEEEecCCCHHHHHHHh
Confidence            445666777777655443332         12245567887 9999  668986556877888887766

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=95.45  E-value=0.19  Score=37.29  Aligned_cols=40  Identities=13%  Similarity=-0.023  Sum_probs=31.3

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEE
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRW   51 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~   51 (217)
                      ..++.|..|+-.-||.|-...+.|.++.++|++ .+++|..
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~-~~v~vv~   87 (185)
T 2gs3_A           48 RGFVCIVTNVASQGGKTEVNYTQLVDLHARYAE-CGLRILA   87 (185)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG-GTEEEEE
T ss_pred             CCCEEEEEEecCCCCchHHHHHHHHHHHHHhhc-CCeEEEE
Confidence            446778888889999999999999999998874 2455543

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=95.35  E-value=0.22  Score=36.52  Aligned_cols=49  Identities=18%  Similarity=0.243  Sum_probs=32.9

Q ss_pred             cCCcceEEEEEecccCc-hhhhhHHHHHHHHHhcCCCCceeEEEeecccCC
Q 027910            9 AGKKLIRIDVSSDTVCP-WCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNP   58 (217)
Q Consensus         9 ~~~~~v~i~~y~D~~CP-~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~   58 (217)
                      .=..++.|..|+-..|| +|-...+.|.++.+.++. .+.+|.+..+++++
T Consensus        29 d~~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~-~~~~v~~v~isvDp   78 (170)
T 4hde_A           29 DLKGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKE-EKLDVQFVSFSVDP   78 (170)
T ss_dssp             HHTTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHH-TTCCCEEEEEESCT
T ss_pred             HhCCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhc-ccccceeEeeecCc
Confidence            33456777777778998 898888888887776653 23344444556555

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=95.29  E-value=0.15  Score=37.60  Aligned_cols=40  Identities=15%  Similarity=0.089  Sum_probs=31.5

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEE
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRW   51 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~   51 (217)
                      ..++.|..|+-.-||.|-...+.|.++.++|.+ .++.|..
T Consensus        46 ~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~-~~v~vv~   85 (183)
T 2obi_A           46 RGFVCIVTNVASQCGKTEVNYTQLVDLHARYAE-CGLRILA   85 (183)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG-GTEEEEE
T ss_pred             CCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhc-CCeEEEE
Confidence            456777888889999999999999999998874 2455543

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=95.07  E-value=0.14  Score=38.58  Aligned_cols=42  Identities=12%  Similarity=0.044  Sum_probs=30.8

Q ss_pred             CcceEEEEEecccCch-hhhhHHHHHHHHHhcCCC--CceeEEEe
Q 027910           11 KKLIRIDVSSDTVCPW-CFVGKRNLDKAIASSKDQ--YDFEIRWH   52 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~-cy~~~~~l~~~~~~~~~~--~~v~v~~~   52 (217)
                      ..++.|.+|+-.-||. |-...+.|.++.++|..+  .++.|...
T Consensus        40 ~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~I   84 (200)
T 2b7k_A           40 LGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFI   84 (200)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEE
Confidence            4567788888899997 999999999987766532  24665543

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=95.03  E-value=0.29  Score=36.56  Aligned_cols=40  Identities=15%  Similarity=-0.033  Sum_probs=31.1

Q ss_pred             CcceEEEEEe-cccCchhhhhHHHHHHHHHhcCCCCceeEEE
Q 027910           11 KKLIRIDVSS-DTVCPWCFVGKRNLDKAIASSKDQYDFEIRW   51 (217)
Q Consensus        11 ~~~v~i~~y~-D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~   51 (217)
                      ..++.|.+|+ -.-||.|-...+.|.++.++|+. .+++|..
T Consensus        44 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~-~~v~vv~   84 (195)
T 2bmx_A           44 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFED-RDAQILG   84 (195)
T ss_dssp             TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHT-TTEEEEE
T ss_pred             CCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHH-CCCEEEE
Confidence            4467777777 89999999999999999888864 3465543

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=95.01  E-value=0.041  Score=37.15  Aligned_cols=31  Identities=13%  Similarity=0.007  Sum_probs=25.7

Q ss_pred             cceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (217)
Q Consensus        12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~   42 (217)
                      .++.|..|+..-||+|....+.+.++.++|+
T Consensus        24 ~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~   54 (109)
T 3f3q_A           24 DKLVVVDFYATWCGPCKMIAPMIEKFSEQYP   54 (109)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHCT
T ss_pred             CCEEEEEEECCcCHhHHHHHHHHHHHHHHCC
Confidence            5677888888899999999999988877664

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=95.00  E-value=0.037  Score=38.92  Aligned_cols=41  Identities=15%  Similarity=0.287  Sum_probs=32.0

Q ss_pred             HHHHHHhCCCCeecEEEE---CCee----eecCCCCHHHHHHHHHHHh
Q 027910          176 EELKKYSANISGVPHFVL---NGKH----ELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       176 ~~~~a~~~gv~g~Pt~vv---~g~~----~~~G~~~~~~l~~~i~~~~  216 (217)
                      +...+.+.||.|+||+++   +|+.    .+.|..+.+.|++.|+++.
T Consensus        80 ~~~l~~~~~v~~~Pt~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~~  127 (134)
T 2fwh_A           80 DVALLKHLNVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRDRQ  127 (134)
T ss_dssp             HHHHHHHTTCCSSSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHHC-
T ss_pred             HHHHHHHcCCCCCCEEEEECCCCCEeeeeeeeeccCHHHHHHHHHhcC
Confidence            445677899999999977   4663    3579999999999998754

>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}

Probab=94.99  E-value=0.27  Score=34.09  Aligned_cols=34  Identities=9%  Similarity=0.181  Sum_probs=25.5

Q ss_pred             eEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecc
Q 027910           14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF   55 (217)
Q Consensus        14 v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~   55 (217)
                      |.|.+|+-+.||+|..+...|.+        .++.++++.+.
T Consensus         5 M~i~iY~~~~C~~C~ka~~~L~~--------~gi~y~~~di~   38 (120)
T 2kok_A            5 MSVTIYGIKNCDTMKKARIWLED--------HGIDYTFHDYK   38 (120)
T ss_dssp             SCEEEEECSSCHHHHHHHHHHHH--------HTCCEEEEEHH
T ss_pred             cEEEEEECCCChHHHHHHHHHHH--------cCCcEEEEeee
Confidence            46889999999999988776653        25667666554

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=94.90  E-value=0.057  Score=37.37  Aligned_cols=40  Identities=13%  Similarity=0.284  Sum_probs=31.6

Q ss_pred             HHHHHhCCCCeecEEEE---CCee--eecCCCCHHHHHHHHHHHh
Q 027910          177 ELKKYSANISGVPHFVL---NGKH--ELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       177 ~~~a~~~gv~g~Pt~vv---~g~~--~~~G~~~~~~l~~~i~~~~  216 (217)
                      ...+.+.||.|+||+++   +|+.  .+.|..+.+.|.+.|++..
T Consensus        76 ~~~~~~~~v~~~Pt~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~~  120 (130)
T 2kuc_A           76 VELRKKYGVHAYPTLLFINSSGEVVYRLVGAEDAPELLKKVKLGV  120 (130)
T ss_dssp             HHHHHHTTCCSSCEEEEECTTSCEEEEEESCCCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHH
Confidence            34567889999999987   5653  3579999999999998764

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=94.88  E-value=0.037  Score=38.12  Aligned_cols=38  Identities=24%  Similarity=0.418  Sum_probs=29.8

Q ss_pred             HHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHHhC
Q 027910          179 KKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAAN  217 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~~~  217 (217)
                      .+.+.|+.++||+++  +|+.  .+.|. +.+.|.+.|+++.+
T Consensus        80 ~~~~~~v~~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l~  121 (121)
T 2j23_A           80 IAQEVGIRAMPTFVFFKNGQKIDTVVGA-DPSKLQAAITQHSA  121 (121)
T ss_dssp             HHHHHTCCSSSEEEEEETTEEEEEEESS-CHHHHHHHHHHHTC
T ss_pred             HHHHcCCCcccEEEEEECCeEEeeEcCC-CHHHHHHHHHHhhC
Confidence            345678999999988  7763  35788 89999999988753

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=94.84  E-value=0.073  Score=39.15  Aligned_cols=62  Identities=10%  Similarity=0.074  Sum_probs=41.2

Q ss_pred             HHHHHHHHHcCCCcccc-cccCcccchhHHHHHHHHHhCCCCeecEEEE--CCee-----------eecCCCC-HHHHHH
Q 027910          146 EFLVECARKVGVEGAAE-FLDDPNSGLNEVHEELKKYSANISGVPHFVL--NGKH-----------ELSGGQP-PEVYLR  210 (217)
Q Consensus       146 ~~L~~ia~~~Gld~~~~-~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv--~g~~-----------~~~G~~~-~~~l~~  210 (217)
                      .+|.+++++.+=. ..| .++-++..       +.+.+.||.++|||++  +|+.           ++.|+.+ .++|++
T Consensus        61 PvleelA~e~~~~-v~f~kVDVDe~~-------e~a~~y~V~siPT~~fFk~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~  132 (160)
T 2av4_A           61 ELLYKVADDIKNF-CVIYLVDITEVP-------DFNTMYELYDPVSVMFFYRNKHMMIDLGTGNNNKINWPMNNKQEFID  132 (160)
T ss_dssp             HHHHHHHHHHTTT-EEEEEEETTTCC-------TTTTTTTCCSSEEEEEEETTEEEEEECSSSCCSCBCSCCCCHHHHHH
T ss_pred             HHHHHHHHHccCC-cEEEEEECCCCH-------HHHHHcCCCCCCEEEEEECCEEEEEecCCCCcCeEEeecCCHHHHHH
Confidence            5677777775311 234 33333322       2478999999999964  7775           4679887 888888


Q ss_pred             HHHHH
Q 027910          211 AFQVA  215 (217)
Q Consensus       211 ~i~~~  215 (217)
                      .|+++
T Consensus       133 ~ie~~  137 (160)
T 2av4_A          133 IVETI  137 (160)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=94.81  E-value=0.1  Score=34.60  Aligned_cols=64  Identities=9%  Similarity=-0.001  Sum_probs=40.6

Q ss_pred             HHHHHHHHHcCCCccccccc-CcccchhHHHHHHHHHhCCCCeecEEEEC-CeeeecCCCCHHHHHHHHHHHh
Q 027910          146 EFLVECARKVGVEGAAEFLD-DPNSGLNEVHEELKKYSANISGVPHFVLN-GKHELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       146 ~~L~~ia~~~Gld~~~~~l~-~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~-g~~~~~G~~~~~~l~~~i~~~~  216 (217)
                      ...++++++.|++-....++ +++.++.+     .....|..+||+++|+ |. .+.|. +.+++.+.|.++.
T Consensus        18 ~~aK~~L~~~gi~y~~idi~~d~~~~~~~-----~~~~~G~~tVP~I~i~Dg~-~l~~~-~~~el~~~L~el~   83 (92)
T 2lqo_A           18 LRLKTALTANRIAYDEVDIEHNRAAAEFV-----GSVNGGNRTVPTVKFADGS-TLTNP-SADEVKAKLVKIA   83 (92)
T ss_dssp             HHHHHHHHHTTCCCEEEETTTCHHHHHHH-----HHHSSSSSCSCEEEETTSC-EEESC-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCceEEEEcCCCHHHHHHH-----HHHcCCCCEeCEEEEeCCE-EEeCC-CHHHHHHHHHHhc
Confidence            45677888889876655343 33222211     1123488999999995 55 45554 6788888888764

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=94.79  E-value=0.93  Score=34.36  Aligned_cols=44  Identities=0%  Similarity=-0.148  Sum_probs=33.4

Q ss_pred             ccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEe
Q 027910            8 SAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWH   52 (217)
Q Consensus         8 ~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~   52 (217)
                      ..-..++.|..|+-.-||.|-...+.|.++.++|++ .++.|.-.
T Consensus        43 ~~~~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~-~g~~vv~v   86 (208)
T 2f8a_A           43 GSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGP-RGLVVLGF   86 (208)
T ss_dssp             GGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG-GTEEEEEE
T ss_pred             HHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHccC-CCeEEEEE
Confidence            333456778888889999999989999999998874 34666543

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=94.64  E-value=0.084  Score=38.11  Aligned_cols=41  Identities=22%  Similarity=0.397  Sum_probs=31.7

Q ss_pred             HHHHHHHhCCCCeecEEEE---CCe--eeecCCC--CHHHHHHHHHHHh
Q 027910          175 HEELKKYSANISGVPHFVL---NGK--HELSGGQ--PPEVYLRAFQVAA  216 (217)
Q Consensus       175 ~~~~~a~~~gv~g~Pt~vv---~g~--~~~~G~~--~~~~l~~~i~~~~  216 (217)
                      .+.+.+...||.|+||++|   +|+  +.+ |..  +.+.|.+.|+++.
T Consensus       104 ~~~~l~~~~~v~~~Pt~~~~d~~G~~~~~~-G~~~~~~~~l~~~l~~~l  151 (154)
T 2ju5_A          104 KNQELKAQYKVTGFPELVFIDAEGKQLARM-GFEPGGGAAYVSKVKSAL  151 (154)
T ss_dssp             HHHHHHHHTTCCSSSEEEEECTTCCEEEEE-CCCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHcCCCCCCEEEEEcCCCCEEEEe-cCCCCCHHHHHHHHHHHH
Confidence            3455677899999999977   465  234 888  8999999998764

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=94.64  E-value=0.11  Score=34.78  Aligned_cols=29  Identities=14%  Similarity=0.161  Sum_probs=22.0

Q ss_pred             hCCCCeecEEEECC-eeeecCCCCHHHHHHHH
Q 027910          182 SANISGVPHFVLNG-KHELSGGQPPEVYLRAF  212 (217)
Q Consensus       182 ~~gv~g~Pt~vv~g-~~~~~G~~~~~~l~~~i  212 (217)
                      ..|..++|+++|+| + .+.|. +.+.|.++|
T Consensus        72 ~~g~~~vP~l~i~~~~-~igg~-~~~~l~~~L  101 (103)
T 3nzn_A           72 FNPSVSFPTTIINDEK-AIVGF-KEKEIRESL  101 (103)
T ss_dssp             HCTTCCSCEEEETTTE-EEESC-CHHHHHHHT
T ss_pred             hCCCCccCEEEECCCE-EEEcC-CHHHHHHHh
Confidence            35899999999998 6 45555 667777665

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=94.58  E-value=0.069  Score=35.24  Aligned_cols=36  Identities=19%  Similarity=0.361  Sum_probs=28.8

Q ss_pred             HHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHH
Q 027910          179 KKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~  215 (217)
                      .+...|+.++||+++  +|+.  .+.|. +.+.+.+.|+++
T Consensus        65 ~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~l~~~  104 (105)
T 3m9j_A           65 VASESEVKSMPTFQFFKKGQKVGEFSGA-NKEKLEATINEL  104 (105)
T ss_dssp             HHHHTTCCBSSEEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred             HHHHcCCCcCcEEEEEECCeEEEEEeCC-CHHHHHHHHHHh
Confidence            356779999999988  7763  35788 999999998875

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=94.58  E-value=0.73  Score=33.58  Aligned_cols=46  Identities=22%  Similarity=0.048  Sum_probs=33.2

Q ss_pred             CcccCCcceEEEEEecccCc-hhhhhHHHHHHHHHhcCCC-CceeEEE
Q 027910            6 SSSAGKKLIRIDVSSDTVCP-WCFVGKRNLDKAIASSKDQ-YDFEIRW   51 (217)
Q Consensus         6 ~~~~~~~~v~i~~y~D~~CP-~cy~~~~~l~~~~~~~~~~-~~v~v~~   51 (217)
                      +...-..++.|.+|+-.-|| .|-...+.|.++.++|... .++++..
T Consensus        22 ~l~~~~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~   69 (170)
T 3me7_A           22 QLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVIT   69 (170)
T ss_dssp             EGGGGTTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEE
T ss_pred             chHHhCCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEE
Confidence            33333456788888889998 5999999999999888632 2455554

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=94.56  E-value=0.038  Score=37.13  Aligned_cols=35  Identities=14%  Similarity=0.127  Sum_probs=27.0

Q ss_pred             HHhCCCCeecEEEECCeeeecCCCCHHHHHHHHHHH
Q 027910          180 KYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       180 a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~~~  215 (217)
                      +.+.| .++|++++||+....|..+.+.|.+.|++.
T Consensus        60 ~~~~g-~~vP~l~~~g~~~~~~g~~~~~l~~~l~~~   94 (100)
T 1wjk_A           60 YERYK-FDIPVFHLNGQFLMMHRVNTSKLEKQLRKL   94 (100)
T ss_dssp             HHHSS-SSCSEEEESSSEEEESSCCHHHHHHHHHSS
T ss_pred             HHHHC-CCCCEEEECCEEEEecCCCHHHHHHHHHHH
Confidence            44678 899999999985435556888899888754

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=94.53  E-value=0.027  Score=39.22  Aligned_cols=38  Identities=18%  Similarity=0.268  Sum_probs=30.7

Q ss_pred             HHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHHh
Q 027910          179 KKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~~  216 (217)
                      .+.+.||.|+||+++  +|+.  .+.|..+.+.|.+.|+++.
T Consensus        81 l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  122 (123)
T 1oaz_A           81 TAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL  122 (123)
T ss_dssp             TGGGGTCCBSSEEEEEESSSEEEEEESCCCHHHHHHHHTTTC
T ss_pred             HHHHcCCCccCEEEEEECCEEEEEEeCCCCHHHHHHHHHHHh
Confidence            456789999999988  7863  3689999999999987653

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=94.51  E-value=0.055  Score=34.53  Aligned_cols=36  Identities=19%  Similarity=0.469  Sum_probs=28.0

Q ss_pred             eEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEe
Q 027910           14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWH   52 (217)
Q Consensus        14 v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~   52 (217)
                      |+|.+|+-..||+|..+.+.|.++.++++   ++.+...
T Consensus         1 m~v~~f~~~~C~~C~~~~~~l~~l~~~~~---~i~~~~v   36 (85)
T 1ego_A            1 MQTVIFGRSGCPYCVRAKDLAEKLSNERD---DFQYQYV   36 (85)
T ss_dssp             CEEEEECCTTSTHHHHHHHHHHHHHHHHS---SCEEEEE
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHHHhcCC---CceEEEE
Confidence            47889999999999999999988776543   3555443

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=94.47  E-value=0.069  Score=35.13  Aligned_cols=36  Identities=19%  Similarity=0.366  Sum_probs=27.9

Q ss_pred             HHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHH
Q 027910          179 KKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~  215 (217)
                      .+.+.|+.++||+++  +|+.  .+.| .+.+.|.+.|+++
T Consensus        64 ~~~~~~v~~~Pt~~~~~~g~~~~~~~G-~~~~~l~~~l~~~  103 (104)
T 2vim_A           64 AAAKYSVTAMPTFVFIKDGKEVDRFSG-ANETKLRETITRH  103 (104)
T ss_dssp             HHHHTTCCSSSEEEEEETTEEEEEEES-SCHHHHHHHHHHH
T ss_pred             HHHHcCCccccEEEEEeCCcEEEEEeC-CCHHHHHHHHHhh
Confidence            455789999999988  7763  3468 4788999998875

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=94.46  E-value=0.065  Score=35.41  Aligned_cols=32  Identities=13%  Similarity=-0.049  Sum_probs=26.3

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~   42 (217)
                      ..+..+.+|+...||+|....+.+.++.++|.
T Consensus        19 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~   50 (106)
T 1xwb_A           19 SGKLVVLDFFATWCGPCKMISPKLVELSTQFA   50 (106)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEEEECCcCHHHHHhhHHHHHHHHHhC
Confidence            45677888888999999999999988877664

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=94.46  E-value=0.074  Score=37.32  Aligned_cols=39  Identities=15%  Similarity=0.342  Sum_probs=31.4

Q ss_pred             HHHHhCCCCeecEEEE--CCe-eeecCCCCHHHHHHHHHHHh
Q 027910          178 LKKYSANISGVPHFVL--NGK-HELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       178 ~~a~~~gv~g~Pt~vv--~g~-~~~~G~~~~~~l~~~i~~~~  216 (217)
                      ..+.+.||.++||+++  +|+ ..+.|..+.+.|.+.|++..
T Consensus        82 ~~~~~~~v~~~Pt~~~~~~G~~~~~~g~~~~~~l~~~l~~~~  123 (140)
T 2dj1_A           82 MLASKFDVSGYPTIKILKKGQAVDYDGSRTQEEIVAKVREVS  123 (140)
T ss_dssp             HHHHHTTCCSSSEEEEEETTEEEECCSCCCHHHHHHHHHHHH
T ss_pred             HHHHHCCCCccCeEEEEECCcEEEcCCCCCHHHHHHHHHHhc
Confidence            3566789999999988  786 23478899999999998764

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=94.37  E-value=0.05  Score=37.14  Aligned_cols=35  Identities=20%  Similarity=0.490  Sum_probs=27.7

Q ss_pred             HHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHH
Q 027910          179 KKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQV  214 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~  214 (217)
                      .+.+.|+.++||+++  +|+.  .+.|.. .+.|.+.|++
T Consensus        75 l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~-~~~l~~~l~~  113 (114)
T 2oe3_A           75 IAKECEVTAMPTFVLGKDGQLIGKIIGAN-PTALEKGIKD  113 (114)
T ss_dssp             HHHHTTCCSBSEEEEEETTEEEEEEESSC-HHHHHHHHHT
T ss_pred             HHHHCCCCcccEEEEEeCCeEEEEEeCCC-HHHHHHHHHh
Confidence            456789999999988  7873  357888 8888888864

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=94.31  E-value=0.032  Score=37.78  Aligned_cols=37  Identities=16%  Similarity=0.341  Sum_probs=29.1

Q ss_pred             HHhCCCCeecEEEE--CCe----eeecCCCCHHHHHHHHHHHh
Q 027910          180 KYSANISGVPHFVL--NGK----HELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       180 a~~~gv~g~Pt~vv--~g~----~~~~G~~~~~~l~~~i~~~~  216 (217)
                      +.+.|+.++||+++  +|+    ..+.|..+.+.|.+.|++..
T Consensus        74 ~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~l~~~~  116 (120)
T 1mek_A           74 AQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRT  116 (120)
T ss_dssp             HHHHTCCSSSEEEEEESSCSSSCEECCCCSSHHHHHHHHHTTS
T ss_pred             HHHCCCCcccEEEEEeCCCcCCcccccCccCHHHHHHHHHhcc
Confidence            34568999999988  775    34578889999999988653

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=94.24  E-value=0.083  Score=35.86  Aligned_cols=36  Identities=22%  Similarity=0.334  Sum_probs=27.8

Q ss_pred             HHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHH
Q 027910          179 KKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~  215 (217)
                      .+.+.||.|+||+++  +|+.  .+.| ...+.|.+.|+++
T Consensus        77 ~~~~~~v~~~Pt~~~~~~G~~~~~~~G-~~~~~l~~~l~~~  116 (117)
T 2xc2_A           77 TARKYNISAMPTFIAIKNGEKVGDVVG-ASIAKVEDMIKKF  116 (117)
T ss_dssp             HHHHTTCCSSSEEEEEETTEEEEEEES-SCHHHHHHHHHHH
T ss_pred             HHHHcCCCccceEEEEeCCcEEEEEeC-CCHHHHHHHHHHh
Confidence            456789999999988  7863  3468 4788899888765

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=94.17  E-value=0.044  Score=44.49  Aligned_cols=36  Identities=22%  Similarity=0.335  Sum_probs=30.8

Q ss_pred             HHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHH
Q 027910          177 ELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQ  213 (217)
Q Consensus       177 ~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~  213 (217)
                      .+.+.+.||.|+||+++||+ .+.|.++.++|.+.+.
T Consensus       241 ~~la~~~gI~~vPT~~i~G~-~~~G~~~~~~L~~~l~  276 (291)
T 3kp9_A          241 AQECTEAGITSYPTWIINGR-TYTGVRSLEALAVASG  276 (291)
T ss_dssp             CHHHHTTTCCSTTEEEETTE-EEESCCCHHHHHHHTC
T ss_pred             HHHHHHcCCcccCeEEECCE-EecCCCCHHHHHHHHC
Confidence            45577899999999999998 5899999999987653

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=94.16  E-value=0.021  Score=37.60  Aligned_cols=35  Identities=14%  Similarity=0.057  Sum_probs=26.8

Q ss_pred             HHHhCCCCeecEEE-ECCeeeecCCCCHHHHHHHHHHH
Q 027910          179 KKYSANISGVPHFV-LNGKHELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       179 ~a~~~gv~g~Pt~v-v~g~~~~~G~~~~~~l~~~i~~~  215 (217)
                      .+.+.|+. +||++ +||+. +.|..+.+.|.+.|++.
T Consensus        40 l~~~~g~~-vPtl~~~~G~~-v~g~~~~~~L~~~l~~~   75 (87)
T 1ttz_A           40 LESAYGLR-VPVLRDPMGRE-LDWPFDAPRLRAWLDAA   75 (87)
T ss_dssp             HHHHHTTT-CSEEECTTCCE-EESCCCHHHHHHHHHTC
T ss_pred             HHHHhCCC-cCeEEEECCEE-EeCCCCHHHHHHHHHHH
Confidence            34456887 99999 78884 45888999999988753

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=94.15  E-value=0.032  Score=38.05  Aligned_cols=37  Identities=16%  Similarity=0.408  Sum_probs=29.3

Q ss_pred             HHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHH
Q 027910          179 KKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~  215 (217)
                      .+.+.||.++||+++  +|+.  .+.|..+.+.|.+.|+++
T Consensus        76 ~~~~~~i~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~l~~~  116 (121)
T 2i1u_A           76 TARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDV  116 (121)
T ss_dssp             HHHHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHTCSC
T ss_pred             HHHhcCCCcCCEEEEEECCEEEEEecCCCCHHHHHHHHHHH
Confidence            456789999999988  7863  357999999998887653

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=94.01  E-value=0.11  Score=36.41  Aligned_cols=38  Identities=18%  Similarity=0.260  Sum_probs=29.3

Q ss_pred             HHHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHHh
Q 027910          178 LKKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       178 ~~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~~  216 (217)
                      ..+.+.||.|+||+++  +|+.  .+.|. ..+.|.+.|+++.
T Consensus        90 ~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~l~~~~  131 (139)
T 3d22_A           90 DFSASWEIKATPTFFFLRDGQQVDKLVGA-NKPELHKKITAIL  131 (139)
T ss_dssp             HHHHHTTCCEESEEEEEETTEEEEEEESC-CHHHHHHHHHHHH
T ss_pred             HHHHHcCCCcccEEEEEcCCeEEEEEeCC-CHHHHHHHHHHHh
Confidence            4567789999999987  6763  35688 7889999888653

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=93.93  E-value=0.097  Score=36.75  Aligned_cols=37  Identities=24%  Similarity=0.337  Sum_probs=28.8

Q ss_pred             HHHhCCCCeecEEEE----CCe--e--eecCCCCHHHHHHHHHHHh
Q 027910          179 KKYSANISGVPHFVL----NGK--H--ELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv----~g~--~--~~~G~~~~~~l~~~i~~~~  216 (217)
                      .+.+.||.|+||+++    +|+  .  .+.|. +.+.|.+.|+++.
T Consensus        84 l~~~~~v~~~Pt~~~~~~~~g~g~~~~~~~G~-~~~~l~~~l~~~l  128 (133)
T 3cxg_A           84 LNDQHNIKALPTFEFYFNLNNEWVLVHTVEGA-NQNDIEKAFQKYC  128 (133)
T ss_dssp             HHHHTTCCSSSEEEEEEEETTEEEEEEEEESC-CHHHHHHHHHHHS
T ss_pred             HHHhcCCCCCCEEEEEEecCCCeEEEEEEcCC-CHHHHHHHHHHHH
Confidence            456789999999976    776  2  35688 7899999998753

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=93.86  E-value=0.064  Score=34.07  Aligned_cols=36  Identities=14%  Similarity=0.334  Sum_probs=27.0

Q ss_pred             EEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeec
Q 027910           15 RIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPF   54 (217)
Q Consensus        15 ~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~   54 (217)
                      ++.+|+-+.||+|..+.+.+.++++    +.++.+++.-+
T Consensus         3 ~~~~f~~~~C~~C~~~~~~l~~~~~----~~~~~~~~~~v   38 (80)
T 2k8s_A            3 SKAIFYHAGCPVCVSAEQAVANAID----PSKYTVEIVHL   38 (80)
T ss_dssp             EEEEEEECSCHHHHHHHHHHHHHSC----TTTEEEEEEET
T ss_pred             ceEEEeCCCCCchHHHHHHHHHHHH----hcCCeEEEEEe
Confidence            5788999999999999998887765    34556554433

>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A

Probab=93.84  E-value=0.38  Score=33.91  Aligned_cols=32  Identities=13%  Similarity=0.307  Sum_probs=24.0

Q ss_pred             EEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecc
Q 027910           16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF   55 (217)
Q Consensus        16 i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~   55 (217)
                      |.+|+-+.||+|..+...|.+        .++.++++.+.
T Consensus         3 i~lY~~~~C~~C~ka~~~L~~--------~gi~y~~~di~   34 (132)
T 1z3e_A            3 VTLYTSPSCTSCRKARAWLEE--------HEIPFVERNIF   34 (132)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH--------TTCCEEEEETT
T ss_pred             EEEEeCCCChHHHHHHHHHHH--------cCCceEEEEcc
Confidence            788999999999987776653        35666666554

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=93.62  E-value=0.2  Score=35.11  Aligned_cols=42  Identities=17%  Similarity=0.046  Sum_probs=33.0

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEe
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWH   52 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~   52 (217)
                      ..+..|.+|+..-||.|-...+.|.++.++|+...++.+...
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i   68 (144)
T 1o73_A           27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLI   68 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEE
T ss_pred             CCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence            456778888889999999999999999998874345666544

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=93.61  E-value=0.077  Score=35.77  Aligned_cols=56  Identities=16%  Similarity=0.097  Sum_probs=31.0

Q ss_pred             HHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHH
Q 027910          147 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVY  208 (217)
Q Consensus       147 ~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l  208 (217)
                      .+..+..+.|++-....++..   ..+.+..  ....|..++|++++||+ .+.|......+
T Consensus        37 ~~~~~L~~~~i~~~~vdi~~~---~~~~~~l--~~~~g~~~vP~v~i~g~-~igg~d~~~~l   92 (105)
T 2yan_A           37 QILEILNSTGVEYETFDILED---EEVRQGL--KAYSNWPTYPQLYVKGE-LVGGLDIVKEL   92 (105)
T ss_dssp             HHHHHHHHHTCCCEEEEGGGC---HHHHHHH--HHHHTCCSSCEEEETTE-EEECHHHHHHH
T ss_pred             HHHHHHHHCCCCeEEEECCCC---HHHHHHH--HHHHCCCCCCeEEECCE-EEeChHHHHHH
Confidence            344455556676544433221   1222222  22348899999999999 56776544333

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=93.59  E-value=0.094  Score=33.10  Aligned_cols=51  Identities=14%  Similarity=0.114  Sum_probs=29.1

Q ss_pred             HHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCC
Q 027910          147 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQ  203 (217)
Q Consensus       147 ~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~  203 (217)
                      .+..+..+.|++-....++..   ......  .....|+.++|++++||+ .+.|..
T Consensus        16 ~~~~~l~~~~i~~~~~~i~~~---~~~~~~--~~~~~~~~~vP~l~~~g~-~i~g~~   66 (82)
T 1fov_A           16 RAKALLSSKGVSFQELPIDGN---AAKREE--MIKRSGRTTVPQIFIDAQ-HIGGYD   66 (82)
T ss_dssp             HHHHHHHHHTCCCEEEECTTC---SHHHHH--HHHHHSSCCSCEEEETTE-EEESHH
T ss_pred             HHHHHHHHCCCCcEEEECCCC---HHHHHH--HHHHhCCCCcCEEEECCE-EEeCHH
Confidence            344555566776554433321   111111  233458999999999998 566653

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.57  E-value=0.058  Score=37.23  Aligned_cols=37  Identities=11%  Similarity=0.180  Sum_probs=30.2

Q ss_pred             HHHhCCCCeecEEEE--CCee-eecCCCCHHHHHHHHHHH
Q 027910          179 KKYSANISGVPHFVL--NGKH-ELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~g~~-~~~G~~~~~~l~~~i~~~  215 (217)
                      .+.+.||.++||+++  +|+. .+.|..+.+.|.+.|++.
T Consensus        69 ~~~~~~v~~~Pt~~~~~~G~~~~~~G~~~~~~l~~~l~~~  108 (126)
T 1x5e_A           69 LSGRFIINALPTIYHCKDGEFRRYQGPRTKKDFINFISDK  108 (126)
T ss_dssp             HHHHTTCCSSSEEEEEETTEEEECCSCCCHHHHHHHHHTC
T ss_pred             HHHHcCCcccCEEEEEeCCeEEEeecCCCHHHHHHHHHHH
Confidence            567899999999988  7772 357988999999998754

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=93.55  E-value=0.11  Score=32.98  Aligned_cols=32  Identities=13%  Similarity=0.243  Sum_probs=22.8

Q ss_pred             HHHhCC--CCeecEEEECCeeeecCCCCHHHHHHHHHH
Q 027910          179 KKYSAN--ISGVPHFVLNGKHELSGGQPPEVYLRAFQV  214 (217)
Q Consensus       179 ~a~~~g--v~g~Pt~vv~g~~~~~G~~~~~~l~~~i~~  214 (217)
                      .+...|  +.++|++++||+ .+.|.   +++.+.+++
T Consensus        48 l~~~~~~~~~~vP~i~~~g~-~i~~~---~~l~~~~~~   81 (85)
T 1ego_A           48 LQQKAGKPVETVPQIFVDQQ-HIGGY---TDFAAWVKE   81 (85)
T ss_dssp             HHHHTCCCSCCSCEEEETTE-EEESS---HHHHHHHHH
T ss_pred             HHHHhCCCCceeCeEEECCE-EEECH---HHHHHHHHH
Confidence            344556  999999999998 56665   566666654

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=93.55  E-value=0.091  Score=33.72  Aligned_cols=57  Identities=11%  Similarity=0.137  Sum_probs=30.5

Q ss_pred             HHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCC-----CeecEEEECCeeeecCCCCHHH
Q 027910          147 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANI-----SGVPHFVLNGKHELSGGQPPEV  207 (217)
Q Consensus       147 ~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv-----~g~Pt~vv~g~~~~~G~~~~~~  207 (217)
                      .+..++++.|++-+...++..+-. ...  .+.....|.     .++|++++||+ .+.|......
T Consensus        19 ~~~~~L~~~~i~~~~~~vd~~~~~-~~~--~el~~~~g~~~~~~~~vP~i~i~g~-~i~g~~~i~~   80 (89)
T 3msz_A           19 WAKQWFEENNIAFDETIIDDYAQR-SKF--YDEMNQSGKVIFPISTVPQIFIDDE-HIGGFTELKA   80 (89)
T ss_dssp             HHHHHHHHTTCCCEEEECCSHHHH-HHH--HHHHHTTTCCSSCCCSSCEEEETTE-EEESHHHHHH
T ss_pred             HHHHHHHHcCCCceEEEeecCCCh-hHH--HHHHHHhCCCCCCCCccCEEEECCE-EEeChHHHHH
Confidence            345566677776443322211100 011  123344566     99999999998 5666644333

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=93.50  E-value=0.081  Score=36.21  Aligned_cols=32  Identities=16%  Similarity=0.060  Sum_probs=26.9

Q ss_pred             CCcceEEEEEecccCchhhhhHHHHHHHHHhc
Q 027910           10 GKKLIRIDVSSDTVCPWCFVGKRNLDKAIASS   41 (217)
Q Consensus        10 ~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~   41 (217)
                      .+..++|++|+-+.||+|-.+.+.|.++.+++
T Consensus        26 ~~~m~~vv~y~~~~C~~C~~a~~~L~~l~~e~   57 (107)
T 2fgx_A           26 QVEPRKLVVYGREGCHLCEEMIASLRVLQKKS   57 (107)
T ss_dssp             CCCCCCEEEEECSSCHHHHHHHHHHHHHHHHS
T ss_pred             CCCccEEEEEeCCCChhHHHHHHHHHHHHHhc
Confidence            34456799999999999999999999887754

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=93.49  E-value=0.068  Score=35.84  Aligned_cols=53  Identities=15%  Similarity=0.218  Sum_probs=29.5

Q ss_pred             HHHHHHHcCCCcccccccCcccchhHHHHHHHHHhC-CCCeecEEEECCeeeecCCCCHH
Q 027910          148 LVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSA-NISGVPHFVLNGKHELSGGQPPE  206 (217)
Q Consensus       148 L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~-gv~g~Pt~vv~g~~~~~G~~~~~  206 (217)
                      ++.++++.|++-....++...   ...+.  ..... |..++|+++|||+ .+.|.....
T Consensus        32 ak~~L~~~~i~y~~idI~~~~---~~~~~--l~~~~~g~~~vP~ifi~g~-~igG~d~l~   85 (99)
T 3qmx_A           32 ALALLKRKGVEFQEYCIDGDN---EAREA--MAARANGKRSLPQIFIDDQ-HIGGCDDIY   85 (99)
T ss_dssp             HHHHHHHHTCCCEEEECTTCH---HHHHH--HHHHTTTCCCSCEEEETTE-EEESHHHHH
T ss_pred             HHHHHHHCCCCCEEEEcCCCH---HHHHH--HHHHhCCCCCCCEEEECCE-EEeChHHHH
Confidence            344555567765544333221   11111  12233 8999999999998 567764433

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=93.47  E-value=0.14  Score=31.76  Aligned_cols=28  Identities=18%  Similarity=0.385  Sum_probs=24.4

Q ss_pred             eEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910           14 IRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (217)
Q Consensus        14 v~i~~y~D~~CP~cy~~~~~l~~~~~~~~   42 (217)
                      ++|.+|.+ -||+|....+.+.++.+++.
T Consensus         2 ~~v~f~a~-wC~~C~~~~~~l~~~~~~~~   29 (77)
T 1ilo_A            2 MKIQIYGT-GCANCQMLEKNAREAVKELG   29 (77)
T ss_dssp             EEEEEECS-SSSTTHHHHHHHHHHHHHTT
T ss_pred             cEEEEEcC-CChhHHHHHHHHHHHHHHcC
Confidence            57888886 99999999999999988775

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=93.46  E-value=0.18  Score=36.73  Aligned_cols=46  Identities=20%  Similarity=0.108  Sum_probs=35.5

Q ss_pred             ccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEee
Q 027910            8 SAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHP   53 (217)
Q Consensus         8 ~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p   53 (217)
                      ..-..++.|.+|+-.-||.|....+.|.++.++|++..++.|....
T Consensus        44 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~   89 (165)
T 3s9f_A           44 DSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILAS   89 (165)
T ss_dssp             GGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEE
T ss_pred             HHcCCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence            3334567788888899999999999999999999854566666543

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=93.39  E-value=0.15  Score=35.80  Aligned_cols=42  Identities=14%  Similarity=0.036  Sum_probs=32.7

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEe
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWH   52 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~   52 (217)
                      ..++.|.+|+-.-||.|-...+.|.++.++|++..++.+...
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v   68 (144)
T 1i5g_A           27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLI   68 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEE
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence            446677777789999999999999999998874345666544

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=93.33  E-value=0.21  Score=32.80  Aligned_cols=36  Identities=28%  Similarity=0.439  Sum_probs=27.1

Q ss_pred             HHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHH
Q 027910          179 KKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~  215 (217)
                      .+.+.|+.++||+++  +|+.  .+.| ...+.|.+.|+++
T Consensus        66 ~~~~~~v~~~Pt~~~~~~G~~~~~~~g-~~~~~l~~~i~~~  105 (106)
T 1xwb_A           66 IAMEYNISSMPTFVFLKNGVKVEEFAG-ANAKRLEDVIKAN  105 (106)
T ss_dssp             HHHHTTCCSSSEEEEEETTEEEEEEES-CCHHHHHHHHHHT
T ss_pred             HHHHcCCCcccEEEEEcCCcEEEEEcC-CCHHHHHHHHHHh
Confidence            455778999999988  7763  3468 5778888888764

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=93.32  E-value=0.045  Score=36.72  Aligned_cols=32  Identities=9%  Similarity=0.075  Sum_probs=26.3

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~   42 (217)
                      ..+..|.+|+..-||+|....+.+.++.++|+
T Consensus        25 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~   56 (113)
T 1ti3_A           25 SQKLIVVDFTASWCPPCKMIAPIFAELAKKFP   56 (113)
T ss_dssp             SSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS
T ss_pred             cCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC
Confidence            45677888888999999999999988887664

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=93.20  E-value=0.11  Score=37.03  Aligned_cols=53  Identities=21%  Similarity=0.176  Sum_probs=31.8

Q ss_pred             HHHHHHHHHcCCCcccccc-cCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCH
Q 027910          146 EFLVECARKVGVEGAAEFL-DDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPP  205 (217)
Q Consensus       146 ~~L~~ia~~~Gld~~~~~l-~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~  205 (217)
                      ..++.++.+.|++-....+ .+++    +++....  ..|..++|.++|||+ .+.|.+..
T Consensus        54 ~~ak~~L~~~gv~y~~vdI~~d~~----~~~~L~~--~~G~~tvP~VfI~G~-~iGG~d~l  107 (135)
T 2wci_A           54 AQAVQALAACGERFAYVDILQNPD----IRAELPK--YANWPTFPQLWVDGE-LVGGCDIV  107 (135)
T ss_dssp             HHHHHHHHTTCSCCEEEEGGGCHH----HHHHHHH--HHTCCSSCEEEETTE-EEESHHHH
T ss_pred             HHHHHHHHHcCCceEEEECCCCHH----HHHHHHH--HHCCCCcCEEEECCE-EEEChHHH
Confidence            4455666677776555423 2332    2222222  237889999999999 57777544

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=93.14  E-value=2.2  Score=32.56  Aligned_cols=47  Identities=19%  Similarity=0.080  Sum_probs=34.7

Q ss_pred             cCcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEee
Q 027910            5 VSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHP   53 (217)
Q Consensus         5 ~~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p   53 (217)
                      ++.+.=..++.|.+|+..-||.|. ..+.|.++.++|.+ .++.|.-.+
T Consensus        49 v~Lsd~~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~-~g~~Vlgvs   95 (215)
T 2i3y_A           49 VSFKQYVGKHILFVNVATYCGLTA-QYPELNALQEELKP-YGLVVLGFP   95 (215)
T ss_dssp             EEGGGGTTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGG-GTEEEEEEE
T ss_pred             EcHHHhCCCEEEEEEeCCCCCChH-hHHHHHHHHHHhcc-CCeEEEEEE
Confidence            334444557888999999999998 88889999998874 356665433

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=93.09  E-value=0.17  Score=36.42  Aligned_cols=37  Identities=24%  Similarity=0.390  Sum_probs=29.0

Q ss_pred             HHHhCCCCeecEEEE--CCee-----------eecC-CCCHHHHHHHHHHH
Q 027910          179 KKYSANISGVPHFVL--NGKH-----------ELSG-GQPPEVYLRAFQVA  215 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~g~~-----------~~~G-~~~~~~l~~~i~~~  215 (217)
                      .+.+.||.++||+++  +|+.           .+.| ..+.+.|.+.|+++
T Consensus        69 l~~~~~v~~~Pt~~~~~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~  119 (149)
T 3gix_A           69 YTQYFDISYIPSTVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI  119 (149)
T ss_dssp             HHHHTTCCSSSEEEEEETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHH
T ss_pred             HHHHcCCCccCeEEEEECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHH
Confidence            356788999999987  5653           3568 88899999998876

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=93.08  E-value=0.11  Score=35.37  Aligned_cols=53  Identities=11%  Similarity=0.128  Sum_probs=31.8

Q ss_pred             HHHHHHHHHcCCCcccccc-cCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCH
Q 027910          146 EFLVECARKVGVEGAAEFL-DDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPP  205 (217)
Q Consensus       146 ~~L~~ia~~~Gld~~~~~l-~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~  205 (217)
                      ....++..+.|++-....+ .+++.++    ....  ..|...+|.++|||+ .|.|.+..
T Consensus        37 ~~ak~~L~~~gi~~~~~dI~~~~~~~~----~l~~--~~g~~tvP~ifi~g~-~iGG~d~l   90 (109)
T 3ipz_A           37 NTVVQILKNLNVPFEDVNILENEMLRQ----GLKE--YSNWPTFPQLYIGGE-FFGGCDIT   90 (109)
T ss_dssp             HHHHHHHHHTTCCCEEEEGGGCHHHHH----HHHH--HHTCSSSCEEEETTE-EEECHHHH
T ss_pred             HHHHHHHHHcCCCcEEEECCCCHHHHH----HHHH--HHCCCCCCeEEECCE-EEeCHHHH
Confidence            3455666677887655533 3333222    2222  237889999999998 56776543

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=93.05  E-value=0.14  Score=34.05  Aligned_cols=31  Identities=6%  Similarity=-0.019  Sum_probs=25.0

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhc
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASS   41 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~   41 (217)
                      ..+..+..|+.+-||+|....+.+.++.++|
T Consensus        20 ~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~   50 (107)
T 1gh2_A           20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKY   50 (107)
T ss_dssp             TTSCEEEEEECSSCHHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEEEECCCChhhHHHHHHHHHHHHHC
Confidence            3456777888889999999999888887765

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=93.02  E-value=2.2  Score=32.26  Aligned_cols=46  Identities=7%  Similarity=-0.127  Sum_probs=34.0

Q ss_pred             cCcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEe
Q 027910            5 VSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWH   52 (217)
Q Consensus         5 ~~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~   52 (217)
                      ++.+.=..++.|.+|+..-||.| ...+.|.++.++|.+ .++.|.-.
T Consensus        31 v~Ls~~kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~-~g~~vlgv   76 (207)
T 2r37_A           31 IPFKQYAGKYVLFVNVASYGGLT-GQYIELNALQEELAP-FGLVILGF   76 (207)
T ss_dssp             EEGGGGTTSEEEEEEECSSSTTT-THHHHHHHHHHHHGG-GTEEEEEE
T ss_pred             EcHHHhCCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhcc-CCEEEEEE
Confidence            33444455788899999999999 778889999998874 35665533

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=92.97  E-value=0.25  Score=32.87  Aligned_cols=35  Identities=20%  Similarity=0.314  Sum_probs=25.0

Q ss_pred             HhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHHh
Q 027910          181 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       181 ~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~~  216 (217)
                      .+.|+.++||+++  +|+.  .+.|. +.+.|.+.|+++.
T Consensus        73 ~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~~l~~~~  111 (113)
T 1ti3_A           73 EEWNVEAMPTFIFLKDGKLVDKTVGA-DKDGLPTLVAKHA  111 (113)
T ss_dssp             HHHHCSSTTEEEEEETTEEEEEEECC-CTTHHHHHHHHHH
T ss_pred             HhCCCCcccEEEEEeCCEEEEEEecC-CHHHHHHHHHHhh
Confidence            3457789999988  7763  34674 6788888887764

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=92.89  E-value=0.061  Score=34.58  Aligned_cols=23  Identities=17%  Similarity=0.663  Sum_probs=19.0

Q ss_pred             ceEEEEEecccCchhhhhHHHHH
Q 027910           13 LIRIDVSSDTVCPWCFVGKRNLD   35 (217)
Q Consensus        13 ~v~i~~y~D~~CP~cy~~~~~l~   35 (217)
                      .++|.+|+.+.||+|..+...|.
T Consensus         3 ~m~v~ly~~~~Cp~C~~~~~~L~   25 (89)
T 3msz_A            3 AMKVKIYTRNGCPYCVWAKQWFE   25 (89)
T ss_dssp             CCCEEEEECTTCHHHHHHHHHHH
T ss_pred             ceEEEEEEcCCChhHHHHHHHHH
Confidence            36799999999999998776554

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=92.82  E-value=0.069  Score=35.46  Aligned_cols=35  Identities=11%  Similarity=0.190  Sum_probs=25.2

Q ss_pred             cceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeec
Q 027910           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPF   54 (217)
Q Consensus        12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~   54 (217)
                      ..-.|++|+-+.||||..+...|.+        .++.+++..+
T Consensus         2 ~ta~I~vYs~~~Cp~C~~aK~~L~~--------~gi~y~~idi   36 (92)
T 2lqo_A            2 VTAALTIYTTSWCGYCLRLKTALTA--------NRIAYDEVDI   36 (92)
T ss_dssp             CSSCEEEEECTTCSSHHHHHHHHHH--------TTCCCEEEET
T ss_pred             CCCcEEEEcCCCCHhHHHHHHHHHh--------cCCceEEEEc
Confidence            3456899999999999997776643        2566665544

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=92.81  E-value=0.21  Score=34.56  Aligned_cols=39  Identities=18%  Similarity=-0.014  Sum_probs=30.8

Q ss_pred             cceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR   50 (217)
Q Consensus        12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~   50 (217)
                      .+..|..|+.+-||+|....+.+.++.++|....++.+.
T Consensus        25 ~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~   63 (133)
T 2dj3_A           25 KKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIA   63 (133)
T ss_dssp             TSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEE
T ss_pred             CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEE
Confidence            567788888999999999999999998888643334443

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=91.95  E-value=0.02  Score=37.86  Aligned_cols=37  Identities=27%  Similarity=0.444  Sum_probs=28.6

Q ss_pred             HHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHH
Q 027910          179 KKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~  215 (217)
                      .+.+.|+.++||+++  +|+.  .+.|..+.+.|.+.|+++
T Consensus        65 ~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~~~  105 (106)
T 2yj7_A           65 TAAQYGIRSIPTLLLFKNGQVVDRLVGAQPKEALKERIDKH  105 (106)
Confidence            456789999999988  6763  246888888888888764

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=92.74  E-value=0.2  Score=34.57  Aligned_cols=38  Identities=16%  Similarity=0.016  Sum_probs=29.8

Q ss_pred             HHHHhCCCCeecEEEE--CCe----eeecCCCCHHHHHHHHHHH
Q 027910          178 LKKYSANISGVPHFVL--NGK----HELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       178 ~~a~~~gv~g~Pt~vv--~g~----~~~~G~~~~~~l~~~i~~~  215 (217)
                      +.+.+.||.|+||+++  +|+    ..+.|..+.+.|.+.|++.
T Consensus        83 ~l~~~~~v~~~Pt~~~~~~g~~~~~~~~~G~~~~~~l~~~i~~~  126 (127)
T 3h79_A           83 DVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQN  126 (127)
T ss_dssp             HHHHHTTCCSSSEEEEECSSCSSSCEECCSCCCHHHHHHHHHHH
T ss_pred             hHHHhcCCccCCEEEEEeCCCCCCceEecCCccHHHHHHHHHhc
Confidence            3567789999999977  332    3567999999999998764

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=92.68  E-value=0.1  Score=36.14  Aligned_cols=24  Identities=25%  Similarity=0.412  Sum_probs=18.6

Q ss_pred             HHhCCCCeecEEEECCeeeecCCCC
Q 027910          180 KYSANISGVPHFVLNGKHELSGGQP  204 (217)
Q Consensus       180 a~~~gv~g~Pt~vv~g~~~~~G~~~  204 (217)
                      +...|+.++|+++++|+ .+.|...
T Consensus        75 ~~~~g~~tvP~vfi~g~-~igG~d~   98 (118)
T 3c1r_A           75 YEINGQRTVPNIYINGK-HIGGNDD   98 (118)
T ss_dssp             HHHHSCCSSCEEEETTE-EEESHHH
T ss_pred             HHHhCCCCcCEEEECCE-EEEcHHH
Confidence            34568999999999999 5677643

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.64  E-value=0.17  Score=34.86  Aligned_cols=37  Identities=16%  Similarity=0.259  Sum_probs=29.0

Q ss_pred             HHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHH
Q 027910          179 KKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~  215 (217)
                      .+.+.||.++||+++  +|+.  .+.|..+.+.|.+.|++.
T Consensus        75 l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~l~~~  115 (133)
T 1x5d_A           75 LASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDL  115 (133)
T ss_dssp             HHHHHTCCSSSEEEEEETTEEEEEECSCCSHHHHHHHHHHH
T ss_pred             HHHhCCCCeeCeEEEEeCCCceEEecCCCCHHHHHHHHHHH
Confidence            455678999999988  5652  357988999999988765

>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19

Probab=92.45  E-value=0.75  Score=36.73  Aligned_cols=41  Identities=17%  Similarity=0.221  Sum_probs=30.5

Q ss_pred             HHHHHHHHhCCCCee--cEEEECCeeeecCCCCHHHHHHHHHHH
Q 027910          174 VHEELKKYSANISGV--PHFVLNGKHELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       174 ~~~~~~a~~~gv~g~--Pt~vv~g~~~~~G~~~~~~l~~~i~~~  215 (217)
                      .++...+...|..++  |.++|||+..+.|. +.+.|.++|.+.
T Consensus        99 ~r~~~~~~~~G~~tVyTPqI~Ing~~~v~G~-d~~~l~~~l~~~  141 (270)
T 2axo_A           99 ERQYGYMRALGRNGVYTPQAILNGRDHVKGA-DVRGIYDRLDAF  141 (270)
T ss_dssp             HHHHHHHHHTTCSCCCSSEEEETTTEEEETT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcccCCEEEECCEEeecCC-CHHHHHHHHHHh
Confidence            334446667899888  99999999546676 578888888754

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=92.42  E-value=0.32  Score=32.30  Aligned_cols=23  Identities=13%  Similarity=0.241  Sum_probs=17.7

Q ss_pred             HHhCCCCeecEEEECCeeeecCCC
Q 027910          180 KYSANISGVPHFVLNGKHELSGGQ  203 (217)
Q Consensus       180 a~~~gv~g~Pt~vv~g~~~~~G~~  203 (217)
                      +...|+.++|+++++|+ .+.|..
T Consensus        61 ~~~~g~~~vP~i~~~g~-~i~g~~   83 (105)
T 1kte_A           61 QQLTGARTVPRVFIGKE-CIGGCT   83 (105)
T ss_dssp             HHHHSCCCSCEEEETTE-EEESHH
T ss_pred             HHHhCCCCcCeEEECCE-EEeccH
Confidence            34568999999999998 466653

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=92.35  E-value=0.29  Score=34.44  Aligned_cols=42  Identities=14%  Similarity=0.053  Sum_probs=32.6

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEe
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWH   52 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~   52 (217)
                      ..++.|.+|+-.-||.|-...+.|.++.++|++..++.+...
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v   68 (146)
T 1o8x_A           27 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFC   68 (146)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEE
T ss_pred             CCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEE
Confidence            345677777779999999999999999998874345666554

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=92.32  E-value=0.28  Score=33.49  Aligned_cols=60  Identities=20%  Similarity=0.142  Sum_probs=33.9

Q ss_pred             HHHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHH
Q 027910          146 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVY  208 (217)
Q Consensus       146 ~~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l  208 (217)
                      .....+..+.|++-....++..+-...+.+..  ....|...+|+++|||+ .+.|......+
T Consensus        31 ~~ak~~L~~~~i~~~~~dvd~~~~~~~~~~~l--~~~~g~~tvP~vfi~g~-~igG~d~l~~l   90 (114)
T 3h8q_A           31 TRVKELFSSLGVECNVLELDQVDDGARVQEVL--SEITNQKTVPNIFVNKV-HVGGCDQTFQA   90 (114)
T ss_dssp             HHHHHHHHHTTCCCEEEETTTSTTHHHHHHHH--HHHHSCCSSCEEEETTE-EEESHHHHHHH
T ss_pred             HHHHHHHHHcCCCcEEEEecCCCChHHHHHHH--HHHhCCCccCEEEECCE-EEeCHHHHHHH
Confidence            34555666677765544333211112232222  23357899999999998 57777544433

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=92.32  E-value=0.29  Score=31.96  Aligned_cols=38  Identities=11%  Similarity=-0.016  Sum_probs=29.8

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEE
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRW   51 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~   51 (217)
                      ..+..+.+|+..-||+|....+.+.++.++++   ++.+..
T Consensus        18 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~   55 (104)
T 2vim_A           18 KGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP---EVEFAK   55 (104)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEE
T ss_pred             CCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC---CCEEEE
Confidence            45667777888999999999999999988775   355543

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=92.28  E-value=0.24  Score=33.45  Aligned_cols=37  Identities=14%  Similarity=0.075  Sum_probs=29.9

Q ss_pred             cceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR   50 (217)
Q Consensus        12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~   50 (217)
                      .+..|.+|+..-||+|....+.+.++.++|+.  ++.+.
T Consensus        30 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~   66 (121)
T 2i1u_A           30 NKPVLVDFWATWCGPCKMVAPVLEEIATERAT--DLTVA   66 (121)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEE
T ss_pred             CCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEE
Confidence            45678888889999999999999999888764  34444

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=92.27  E-value=0.26  Score=33.88  Aligned_cols=32  Identities=19%  Similarity=0.123  Sum_probs=27.9

Q ss_pred             cceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD   43 (217)
Q Consensus        12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~   43 (217)
                      .+..|.+|+.+-||+|....+.+.++.++|++
T Consensus        35 ~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~   66 (130)
T 2dml_A           35 DGLWLVEFYAPWCGHCQRLTPEWKKAATALKD   66 (130)
T ss_dssp             SSCEEEEEECTTCSTTGGGHHHHHHHHHHTTT
T ss_pred             CCeEEEEEECCCCHHHHhhCHHHHHHHHHhcC
Confidence            46778888889999999999999999888764

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=92.23  E-value=0.18  Score=32.53  Aligned_cols=51  Identities=12%  Similarity=0.009  Sum_probs=29.4

Q ss_pred             HHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhC-CCCeecEEEECCeeeecCCCCH
Q 027910          147 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSA-NISGVPHFVLNGKHELSGGQPP  205 (217)
Q Consensus       147 ~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~-gv~g~Pt~vv~g~~~~~G~~~~  205 (217)
                      .+..+.++.|++-....++ +    ...  .+..... |+.++|++++||+ .+.|....
T Consensus        21 ~~~~~L~~~~i~~~~vdv~-~----~~~--~~l~~~~~~~~~vP~l~~~g~-~i~g~~~i   72 (89)
T 2klx_A           21 RARDLLDKKGVKYTDIDAS-T----SLR--QEMVQRANGRNTFPQIFIGDY-HVGGCDDL   72 (89)
T ss_dssp             HHHHHHHHHTCCEEEECSC-H----HHH--HHHHHHHHSSCCSCEEEETTE-ECCSHHHH
T ss_pred             HHHHHHHHcCCCcEEEECC-H----HHH--HHHHHHhCCCCCcCEEEECCE-EEeChHHH
Confidence            4455666667754433332 1    111  1223345 8999999999998 56666443

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=92.22  E-value=0.16  Score=33.31  Aligned_cols=32  Identities=16%  Similarity=0.019  Sum_probs=27.9

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~   42 (217)
                      ..+..+.+|+..-||+|....+.+.++.++|+
T Consensus        19 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~   50 (105)
T 3m9j_A           19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS   50 (105)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHST
T ss_pred             CCCeEEEEEECCCChhhHHHHHHHHHHHHHcc
Confidence            45677888888999999999999999988876

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=92.18  E-value=0.95  Score=34.44  Aligned_cols=40  Identities=18%  Similarity=-0.000  Sum_probs=29.8

Q ss_pred             CcceEEEEEe-cccCchhhhhHHHHHHHHHhcCCCCceeEEE
Q 027910           11 KKLIRIDVSS-DTVCPWCFVGKRNLDKAIASSKDQYDFEIRW   51 (217)
Q Consensus        11 ~~~v~i~~y~-D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~   51 (217)
                      ..+..|.+|+ -.-||.|-...+.|.++.++|.+ .+++|..
T Consensus        51 ~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~-~~v~vv~   91 (213)
T 2i81_A           51 GKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHE-RNVELLG   91 (213)
T ss_dssp             TTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHH-TTEEEEE
T ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE
Confidence            3456677776 88999999999999998888852 3566543

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=92.14  E-value=0.13  Score=36.32  Aligned_cols=55  Identities=18%  Similarity=0.229  Sum_probs=30.6

Q ss_pred             HHHHHHcC---CCcccccccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHH
Q 027910          149 VECARKVG---VEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPE  206 (217)
Q Consensus       149 ~~ia~~~G---ld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~  206 (217)
                      ..+..+.|   ++...+.++..+-...+.+.  .....|..++|+++|||+ .+.|..+..
T Consensus        55 k~~L~~~~~~~i~~~~vdvd~~~~~~~~~~~--L~~~~g~~tVP~vfi~g~-~igG~d~l~  112 (129)
T 3ctg_A           55 STLFQELNVPKSKALVLELDEMSNGSEIQDA--LEEISGQKTVPNVYINGK-HIGGNSDLE  112 (129)
T ss_dssp             HHHHTTSCCCGGGEEEEEGGGSTTHHHHHHH--HHHHHSCCSSCEEEETTE-EEESHHHHH
T ss_pred             HHHHHhcCccCCCcEEEEccccCCHHHHHHH--HHHHhCCCCCCEEEECCE-EEcCHHHHH
Confidence            56666666   44433333322211122222  233458899999999999 567765433

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=92.13  E-value=0.28  Score=33.25  Aligned_cols=37  Identities=11%  Similarity=-0.058  Sum_probs=29.7

Q ss_pred             cceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR   50 (217)
Q Consensus        12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~   50 (217)
                      .+..|.+|+.+-||+|....+.+.++.++|++  ++.+.
T Consensus        21 ~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~--~~~~~   57 (122)
T 3aps_A           21 KTHWVVDFYAPWCGPCQNFAPEFELLARMIKG--KVRAG   57 (122)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TCEEE
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEE
Confidence            45678888889999999999999999888864  34443

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=92.09  E-value=0.078  Score=33.63  Aligned_cols=31  Identities=16%  Similarity=0.127  Sum_probs=21.4

Q ss_pred             HHHHhCCCCeecEEEECCeeeecCCC-CHHHH
Q 027910          178 LKKYSANISGVPHFVLNGKHELSGGQ-PPEVY  208 (217)
Q Consensus       178 ~~a~~~gv~g~Pt~vv~g~~~~~G~~-~~~~l  208 (217)
                      +.+.+.|+.++||+++||+....|.. +.+.|
T Consensus        46 ~~~~~~gv~~vPt~~i~g~~~~~G~~~~~~~l   77 (80)
T 2k8s_A           46 AEAEKAGVKSVPALVIDGAAFHINFGAGIDDL   77 (80)
T ss_dssp             HHHHHHTCCEEEEEEETTEEEEEEEEEEHHHH
T ss_pred             HHHHHcCCCcCCEEEECCEEEEeccCcCHHHh
Confidence            34556799999999999984445543 34444

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=92.05  E-value=0.18  Score=34.51  Aligned_cols=54  Identities=13%  Similarity=0.085  Sum_probs=31.6

Q ss_pred             HHHHHHHHHcCCCccccccc-CcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHH
Q 027910          146 EFLVECARKVGVEGAAEFLD-DPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPE  206 (217)
Q Consensus       146 ~~L~~ia~~~Gld~~~~~l~-~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~  206 (217)
                      ...+++..+.|++-....+. +++.    ++....  ..|...+|.++|||+ .+.|.+...
T Consensus        35 ~~ak~~L~~~gi~y~~~di~~d~~~----~~~l~~--~~g~~tvP~ifi~g~-~iGG~d~l~   89 (111)
T 3zyw_A           35 KQMVEILHKHNIQFSSFDIFSDEEV----RQGLKA--YSSWPTYPQLYVSGE-LIGGLDIIK   89 (111)
T ss_dssp             HHHHHHHHHTTCCCEEEEGGGCHHH----HHHHHH--HHTCCSSCEEEETTE-EEECHHHHH
T ss_pred             HHHHHHHHHcCCCeEEEECcCCHHH----HHHHHH--HHCCCCCCEEEECCE-EEecHHHHH
Confidence            34455666778775555332 3322    222222  227788999999998 567765433

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=91.25  E-value=0.028  Score=39.04  Aligned_cols=39  Identities=23%  Similarity=0.471  Sum_probs=29.5

Q ss_pred             HHHHhCCCCeecEEEE----CCee----eecCCCCHHHHHHHHHHHh
Q 027910          178 LKKYSANISGVPHFVL----NGKH----ELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       178 ~~a~~~gv~g~Pt~vv----~g~~----~~~G~~~~~~l~~~i~~~~  216 (217)
                      ..+...||.|+||+++    +|+.    .+.|..+.+.|.+.|+++.
T Consensus        69 ~~~~~~~v~~~Pt~~~~d~~~G~~~~~~~~~G~~~~~~l~~~l~~~~  115 (130)
T 2lst_A           69 ELARRYRVPGTPTFVFLVPKAGAWEEVGRLFGSRPRAEFLKELRQVC  115 (130)
Confidence            3456789999999977    3663    2578888889988887653

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=91.89  E-value=0.13  Score=33.72  Aligned_cols=56  Identities=7%  Similarity=-0.141  Sum_probs=33.4

Q ss_pred             HHHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCC--CCeecEEEECCeeeecCCCCHHH
Q 027910          146 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSAN--ISGVPHFVLNGKHELSGGQPPEV  207 (217)
Q Consensus       146 ~~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~g--v~g~Pt~vv~g~~~~~G~~~~~~  207 (217)
                      ....++..+.|++-+...++..   ...++..  ....|  ...+|.++|||+ .+.|......
T Consensus        22 ~~ak~~L~~~~i~~~~~di~~~---~~~~~~l--~~~~g~~~~~vP~ifi~g~-~igG~d~l~~   79 (93)
T 1t1v_A           22 SEVTRILDGKRIQYQLVDISQD---NALRDEM--RTLAGNPKATPPQIVNGNH-YCGDYELFVE   79 (93)
T ss_dssp             HHHHHHHHHTTCCCEEEETTSC---HHHHHHH--HHHTTCTTCCSCEEEETTE-EEEEHHHHHH
T ss_pred             HHHHHHHHHCCCceEEEECCCC---HHHHHHH--HHHhCCCCCCCCEEEECCE-EEeCHHHHHH
Confidence            4566677788887665534322   1222222  22346  779999999999 4677644433

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=91.82  E-value=0.2  Score=33.54  Aligned_cols=37  Identities=24%  Similarity=0.425  Sum_probs=28.9

Q ss_pred             HHHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHH
Q 027910          178 LKKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       178 ~~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~  215 (217)
                      ..+.+.||.|+||+++  +|+.  .+.|. ..+.|.+.|++.
T Consensus        68 ~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~i~~~  108 (109)
T 3f3q_A           68 DVAQKNEVSAMPTLLLFKNGKEVAKVVGA-NPAAIKQAIAAN  108 (109)
T ss_dssp             HHHHHTTCCSSSEEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred             HHHHHcCCCccCEEEEEECCEEEEEEeCC-CHHHHHHHHHhh
Confidence            3567789999999988  7763  34688 669999999875

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=91.75  E-value=0.14  Score=34.78  Aligned_cols=52  Identities=17%  Similarity=0.132  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHcCCCccccccc-CcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCC
Q 027910          145 KEFLVECARKVGVEGAAEFLD-DPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQ  203 (217)
Q Consensus       145 ~~~L~~ia~~~Gld~~~~~l~-~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~  203 (217)
                      =..+..++.+.|++-....++ +++    +.+...  ...|..++|+++|||+ .+.|..
T Consensus        33 C~~ak~~L~~~~i~~~~vdi~~~~~----~~~~l~--~~~g~~~vP~ifi~g~-~igG~d   85 (109)
T 1wik_A           33 SKQILEILNSTGVEYETFDILEDEE----VRQGLK--TFSNWPTYPQLYVRGD-LVGGLD   85 (109)
T ss_dssp             HHHHHHHHHHTCSCEEEEESSSCHH----HHHHHH--HHHSCCSSCEEECSSS-EEECHH
T ss_pred             HHHHHHHHHHcCCCeEEEECCCCHH----HHHHHH--HHhCCCCCCEEEECCE-EEcCHH
Confidence            345666777778875555333 222    222222  2347889999999998 467764

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=91.71  E-value=0.13  Score=33.30  Aligned_cols=22  Identities=32%  Similarity=0.618  Sum_probs=18.2

Q ss_pred             EEEEEecccCchhhhhHHHHHH
Q 027910           15 RIDVSSDTVCPWCFVGKRNLDK   36 (217)
Q Consensus        15 ~i~~y~D~~CP~cy~~~~~l~~   36 (217)
                      +|.+|+.+.||+|..+.+.|.+
T Consensus         7 ~v~~y~~~~C~~C~~~~~~L~~   28 (89)
T 2klx_A            7 EIILYTRPNCPYCKRARDLLDK   28 (89)
T ss_dssp             CEEEESCSCCTTTHHHHHHHHH
T ss_pred             eEEEEECCCChhHHHHHHHHHH
Confidence            5778999999999998776654

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=91.56  E-value=0.38  Score=32.57  Aligned_cols=31  Identities=19%  Similarity=0.058  Sum_probs=27.2

Q ss_pred             cceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (217)
Q Consensus        12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~   42 (217)
                      .+..|.+|+.+-||+|....+.+.++.++|+
T Consensus        30 ~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~   60 (114)
T 2oe3_A           30 NDKLVIDFYATWCGPCKMMQPHLTKLIQAYP   60 (114)
T ss_dssp             CSEEEEEEECTTCHHHHHTHHHHHHHHHHCT
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHCC
Confidence            3577888889999999999999999988876

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=91.51  E-value=0.43  Score=34.08  Aligned_cols=39  Identities=18%  Similarity=0.265  Sum_probs=31.1

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR   50 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~   50 (217)
                      ..+..|.+|+..-||.|-...+.|.++.++|++ .++.+.
T Consensus        40 ~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~v   78 (158)
T 3hdc_A           40 RGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPK-GDLVVL   78 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHSST-TSEEEE
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHccc-CCeEEE
Confidence            446778888899999999999999999998873 345544

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=91.27  E-value=0.37  Score=32.55  Aligned_cols=33  Identities=9%  Similarity=-0.083  Sum_probs=27.9

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD   43 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~   43 (217)
                      ..+..+..|+.+-||+|....+.+.++.++|+.
T Consensus        24 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~   56 (121)
T 2djj_A           24 DTKDVLIEFYAPWCGHCKALAPKYEELGALYAK   56 (121)
T ss_dssp             TTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhh
Confidence            446677788889999999999999999888864

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=91.11  E-value=0.29  Score=33.63  Aligned_cols=38  Identities=21%  Similarity=0.290  Sum_probs=28.9

Q ss_pred             HHHHhCCCCeecEEEE---CCe--eeecCCCCHHHHHHHHHHH
Q 027910          178 LKKYSANISGVPHFVL---NGK--HELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       178 ~~a~~~gv~g~Pt~vv---~g~--~~~~G~~~~~~l~~~i~~~  215 (217)
                      ..+.+.||.++||+++   +|+  ..+.|..+.+.|.+.|.+.
T Consensus        80 ~l~~~~~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~  122 (130)
T 2dml_A           80 SLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSA  122 (130)
T ss_dssp             HHHHHHTCCSSSEEEEESSCTTSCEECCSCCSHHHHHHHHHHH
T ss_pred             HHHHHcCCCccCEEEEEeCCCCeEEEeecCCCHHHHHHHHHHH
Confidence            4567789999999988   232  3457988999998888754

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=91.11  E-value=0.47  Score=31.33  Aligned_cols=37  Identities=19%  Similarity=0.243  Sum_probs=26.3

Q ss_pred             HHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHHh
Q 027910          179 KKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~~  216 (217)
                      .+.+.|+.++||+++  +|+.  .+.|..+ +.|.+.|++..
T Consensus        66 ~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~-~~l~~~l~~~l  106 (107)
T 1gh2_A           66 TAATNNISATPTFQFFRNKVRIDQYQGADA-VGLEEKIKQHL  106 (107)
T ss_dssp             HHHHTTCCSSSEEEEEETTEEEEEEESSCH-HHHHHHHHHHH
T ss_pred             HHHhcCCCcccEEEEEECCeEEEEEeCCCH-HHHHHHHHHhc
Confidence            456789999999977  6762  3568654 55888887653

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=90.87  E-value=0.39  Score=30.89  Aligned_cols=56  Identities=9%  Similarity=-0.029  Sum_probs=32.2

Q ss_pred             HHHHHHHHHcCCCcccccccCcc--cchhHHHHHHHHHhCCCC-----eecEEEE-CCeeeecCCCC
Q 027910          146 EFLVECARKVGVEGAAEFLDDPN--SGLNEVHEELKKYSANIS-----GVPHFVL-NGKHELSGGQP  204 (217)
Q Consensus       146 ~~L~~ia~~~Gld~~~~~l~~~~--~~~~~~~~~~~a~~~gv~-----g~Pt~vv-~g~~~~~G~~~  204 (217)
                      ...+.++.+.|++-+...++..+  ......+...  ...|..     ++|+++| ||+ .+.|.+.
T Consensus        18 ~~ak~~L~~~gi~y~~idI~~~~~~~~~~~~~~l~--~~~g~~~~~~~tvP~v~i~~g~-~igG~d~   81 (87)
T 1aba_A           18 DNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELL--TKLGRDTQIGLTMPQVFAPDGS-HIGGFDQ   81 (87)
T ss_dssp             HHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHH--HHHTCSCCTTCCSCEEECTTSC-EEESHHH
T ss_pred             HHHHHHHHHcCCCEEEEEeeccccccCHHHHHHHH--HHhCCCCCCCCccCEEEEECCE-EEeCHHH
Confidence            34566777888876655333110  1122333332  233666     8999999 998 5677643

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=90.81  E-value=0.078  Score=35.99  Aligned_cols=34  Identities=21%  Similarity=0.290  Sum_probs=22.5

Q ss_pred             HHhCCCCeecEEEECCeeeecCCC------CHHHHHHHHHH
Q 027910          180 KYSANISGVPHFVLNGKHELSGGQ------PPEVYLRAFQV  214 (217)
Q Consensus       180 a~~~gv~g~Pt~vv~g~~~~~G~~------~~~~l~~~i~~  214 (217)
                      +...|+.++||++++|+ .+.|..      +.+.|.+.|++
T Consensus        66 ~~~~~v~~~Pt~~~~g~-~v~~~~~~~~~~~~~~l~~~l~~  105 (116)
T 2e7p_A           66 AHWTGRGTVPNVFIGGK-QIGGCDTVVEKHQRNELLPLLQD  105 (116)
T ss_dssp             HHHHSCCSSCEEEETTE-EEECHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHhCCCCcCEEEECCE-EECChHHHHHHHhCChHHHHHHH
Confidence            44678999999999998 344432      33356666654

>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19

Probab=90.75  E-value=0.24  Score=39.58  Aligned_cols=30  Identities=17%  Similarity=0.206  Sum_probs=25.9

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHh
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIAS   40 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~   40 (217)
                      .+++.|++|+...||||-.+...|.++..+
T Consensus        41 ~~~~~VelyTs~gCp~C~~Ak~lL~~~~~~   70 (270)
T 2axo_A           41 AVKGVVELFTSQGCASCPPADEALRKMIQK   70 (270)
T ss_dssp             CCCCEEEEEECTTCTTCHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCChHHHHHHHHHhhcc
Confidence            445899999999999999999999887654

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=90.69  E-value=0.19  Score=32.57  Aligned_cols=21  Identities=24%  Similarity=0.515  Sum_probs=17.3

Q ss_pred             EEEEEecccCchhhhhHHHHH
Q 027910           15 RIDVSSDTVCPWCFVGKRNLD   35 (217)
Q Consensus        15 ~i~~y~D~~CP~cy~~~~~l~   35 (217)
                      +|.+|+.+.||+|..+...|.
T Consensus         7 ~v~ly~~~~C~~C~~~~~~L~   27 (92)
T 2khp_A            7 DVIIYTRPGCPYCARAKALLA   27 (92)
T ss_dssp             CEEEEECTTCHHHHHHHHHHH
T ss_pred             cEEEEECCCChhHHHHHHHHH
Confidence            577899999999998776654

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=90.66  E-value=0.18  Score=36.84  Aligned_cols=37  Identities=16%  Similarity=0.260  Sum_probs=28.1

Q ss_pred             HHhCCCCeecEEEE---CCee--eecCCCC-HHHHHHHHHHHh
Q 027910          180 KYSANISGVPHFVL---NGKH--ELSGGQP-PEVYLRAFQVAA  216 (217)
Q Consensus       180 a~~~gv~g~Pt~vv---~g~~--~~~G~~~-~~~l~~~i~~~~  216 (217)
                      +...||.|+||+++   +|+.  ...|..+ .+.|.+.|+++.
T Consensus       123 ~~~~~v~~~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~l  165 (172)
T 3f9u_A          123 RVKFGANAQPFYVLIDNEGNPLNKSYAYDEDISKYINFLQTGL  165 (172)
T ss_dssp             HHHHSCCCSSEEEEECTTSCBSSCCBCSCCCHHHHHHHHHHHH
T ss_pred             HHHcCCCCcceEEEECCCCCEEeeccCCCCCHHHHHHHHHHHH
Confidence            46789999999866   4652  3469888 999888887653

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=90.62  E-value=0.33  Score=37.14  Aligned_cols=36  Identities=19%  Similarity=0.286  Sum_probs=29.5

Q ss_pred             HhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHHh
Q 027910          181 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       181 ~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~~  216 (217)
                      .+.||.|+||+++  +|+.  .+.|..+.+.|.+.|+++.
T Consensus        78 ~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  117 (222)
T 3dxb_A           78 PKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL  117 (222)
T ss_dssp             GGGTCCSBSEEEEEETTEEEEEEESCCCHHHHHHHHHHHS
T ss_pred             HHcCCCcCCEEEEEECCeEEEEeccccChHHHHHHHHhhc
Confidence            4568999999988  7763  4579999999999998764

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=90.54  E-value=0.26  Score=31.90  Aligned_cols=51  Identities=10%  Similarity=0.025  Sum_probs=28.5

Q ss_pred             HHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCC
Q 027910          148 LVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQP  204 (217)
Q Consensus       148 L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~  204 (217)
                      +..+.++.|++-....++..   ....++  .....|+.++|++++||+ .+.|...
T Consensus        22 ~~~~L~~~~i~~~~~di~~~---~~~~~~--l~~~~~~~~vP~l~~~g~-~i~g~~~   72 (92)
T 2khp_A           22 AKALLARKGAEFNEIDASAT---PELRAE--MQERSGRNTFPQIFIGSV-HVGGCDD   72 (92)
T ss_dssp             HHHHHHHTTCCCEEEESTTS---HHHHHH--HHHHHTSSCCCEEEETTE-EEESHHH
T ss_pred             HHHHHHHcCCCcEEEECCCC---HHHHHH--HHHHhCCCCcCEEEECCE-EEcCHHH
Confidence            44455566776544433321   112221  223458899999999998 5666643

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=90.45  E-value=0.5  Score=33.97  Aligned_cols=55  Identities=16%  Similarity=0.098  Sum_probs=31.4

Q ss_pred             HHHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCC
Q 027910          146 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQ  203 (217)
Q Consensus       146 ~~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~  203 (217)
                      ..+..++++.|++-..+.++..+-...+.  ...+...|+.++|++++||+ .+.|..
T Consensus        63 ~~~k~~L~~~~i~~~~vdId~~~~~~~~~--~~L~~~~g~~tvP~ifi~G~-~igG~d  117 (146)
T 2ht9_A           63 TMAKKLFHDMNVNYKVVELDLLEYGNQFQ--DALYKMTGERTVPRIFVNGT-FIGGAT  117 (146)
T ss_dssp             HHHHHHHHHHTCCCEEEEGGGCTTHHHHH--HHHHHHHSCCCSCEEEETTE-EEESHH
T ss_pred             HHHHHHHHHcCCCeEEEECccCcCCHHHH--HHHHHHhCCCCcCeEEECCE-EEeCch
Confidence            34555666677765443333221111121  12345568999999999998 566654

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=90.25  E-value=0.18  Score=31.10  Aligned_cols=23  Identities=26%  Similarity=0.590  Sum_probs=18.7

Q ss_pred             eEEEEEecccCchhhhhHHHHHH
Q 027910           14 IRIDVSSDTVCPWCFVGKRNLDK   36 (217)
Q Consensus        14 v~i~~y~D~~CP~cy~~~~~l~~   36 (217)
                      |+|.+|+...||+|..+.+.|.+
T Consensus         1 m~i~~y~~~~C~~C~~~~~~l~~   23 (75)
T 1r7h_A            1 MSITLYTKPACVQCTATKKALDR   23 (75)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCChHHHHHHHHHHH
Confidence            35788999999999987776653

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=90.23  E-value=0.34  Score=32.97  Aligned_cols=23  Identities=13%  Similarity=0.198  Sum_probs=17.8

Q ss_pred             HHhCCCCeecEEEECCeeeecCCC
Q 027910          180 KYSANISGVPHFVLNGKHELSGGQ  203 (217)
Q Consensus       180 a~~~gv~g~Pt~vv~g~~~~~G~~  203 (217)
                      +...|+.++|++++||+ .+.|..
T Consensus        68 ~~~~g~~~vP~v~i~g~-~igg~~   90 (114)
T 2hze_A           68 EQITGGKTVPRIFFGKT-SIGGYS   90 (114)
T ss_dssp             HHHHSCCSSCEEEETTE-EEESHH
T ss_pred             HHHhCCCCcCEEEECCE-EEeCcH
Confidence            34568999999999998 466654

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.14  E-value=0.49  Score=32.47  Aligned_cols=31  Identities=13%  Similarity=0.051  Sum_probs=27.0

Q ss_pred             cceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (217)
Q Consensus        12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~   42 (217)
                      .+..|.+|+..-||+|....+.+.++.++|.
T Consensus        25 ~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~   55 (133)
T 1x5d_A           25 EDVWMVEFYAPWCGHCKNLEPEWAAAASEVK   55 (133)
T ss_dssp             SSEEEEEEECTTCHHHHTHHHHHHHHHHHHH
T ss_pred             CCeEEEEEECCCCHHHHhhcHHHHHHHHHHH
Confidence            4678888889999999999999999888775

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=89.97  E-value=0.29  Score=32.64  Aligned_cols=29  Identities=17%  Similarity=0.460  Sum_probs=23.0

Q ss_pred             ccCCcceEEEEEecccCchhhhhHHHHHH
Q 027910            8 SAGKKLIRIDVSSDTVCPWCFVGKRNLDK   36 (217)
Q Consensus         8 ~~~~~~v~i~~y~D~~CP~cy~~~~~l~~   36 (217)
                      +-+..+.+|.+|+-+.||+|..+...|.+
T Consensus        10 ~~~~~~~~v~vy~~~~Cp~C~~ak~~L~~   38 (99)
T 3qmx_A           10 HGSAVSAKIEIYTWSTCPFCMRALALLKR   38 (99)
T ss_dssp             CCSCCCCCEEEEECTTCHHHHHHHHHHHH
T ss_pred             cCccCCCCEEEEEcCCChhHHHHHHHHHH
Confidence            33445678889999999999998887764

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.94  E-value=0.52  Score=32.97  Aligned_cols=54  Identities=17%  Similarity=0.086  Sum_probs=29.1

Q ss_pred             HHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCC
Q 027910          147 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQ  203 (217)
Q Consensus       147 ~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~  203 (217)
                      .+..+..+.|++-..+.++..+-...+..  ..+...|+.++|+++++|+ .+.|..
T Consensus        42 ~~~~~L~~~~i~~~~vdid~~~~~~~~~~--~l~~~~g~~~vP~l~i~G~-~igg~~   95 (130)
T 2cq9_A           42 MAKKLFHDMNVNYKVVELDLLEYGNQFQD--ALYKMTGERTVPRIFVNGT-FIGGAT   95 (130)
T ss_dssp             HHHHHHHHHTCCCEEEETTTSTTHHHHHH--HHHHHHSSCCSSEEEETTE-EEEEHH
T ss_pred             HHHHHHHHcCCCcEEEECcCCcCcHHHHH--HHHHHhCCCCcCEEEECCE-EEcChH
Confidence            34445555566544333332211111211  2344568999999999998 466653

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=89.90  E-value=0.31  Score=32.94  Aligned_cols=30  Identities=20%  Similarity=0.301  Sum_probs=25.9

Q ss_pred             ceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910           13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (217)
Q Consensus        13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~   42 (217)
                      +..|.+|+.+-||+|....+.+.++.++++
T Consensus        30 ~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~   59 (118)
T 1zma_A           30 ETATFFIGRKTCPYCRKFAGTLSGVVAETK   59 (118)
T ss_dssp             CCEEEEEECTTCHHHHHHHHHHHHHHHHHC
T ss_pred             CeEEEEEECCCCccHHHHHHHHHHHHHhcC
Confidence            467888888999999999999999888664

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=89.86  E-value=0.69  Score=31.23  Aligned_cols=57  Identities=18%  Similarity=0.181  Sum_probs=32.2

Q ss_pred             HHHHHHHHHcCCCcccccccCc-ccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCH
Q 027910          146 EFLVECARKVGVEGAAEFLDDP-NSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPP  205 (217)
Q Consensus       146 ~~L~~ia~~~Gld~~~~~l~~~-~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~  205 (217)
                      ..+..+..+.|++.....++.. .-...+.+..  ....|..++|+++|||+ .+.|....
T Consensus        33 ~~~~~~L~~~~i~~~~~di~~~~~~~~~~~~~l--~~~~g~~tvP~ifi~g~-~igG~~~~   90 (113)
T 3rhb_A           33 TEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVL--ERLTGQHTVPNVFVCGK-HIGGCTDT   90 (113)
T ss_dssp             HHHHHHHHHTTCCCEEEEGGGSTTHHHHHHHHH--HHHHSCCSSCEEEETTE-EEESHHHH
T ss_pred             HHHHHHHHHcCCCCeEEEeecCCCChHHHHHHH--HHHhCCCCcCEEEECCE-EEcCcHHH
Confidence            4455666777876554433321 1111222222  22348899999999999 56776543

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=89.69  E-value=0.21  Score=36.26  Aligned_cols=36  Identities=14%  Similarity=0.172  Sum_probs=24.0

Q ss_pred             HHhCCCCeecEEEE---CCe--eeecCC-------CCHHHHHHHHHHH
Q 027910          180 KYSANISGVPHFVL---NGK--HELSGG-------QPPEVYLRAFQVA  215 (217)
Q Consensus       180 a~~~gv~g~Pt~vv---~g~--~~~~G~-------~~~~~l~~~i~~~  215 (217)
                      +...++.|+||++|   +|+  ..+.|+       ..++.+.++|+.+
T Consensus        93 ~~~~~v~~~PT~~f~~~~G~~v~~~~G~~~~~~~~~~~~~~~~ll~~~  140 (151)
T 3ph9_A           93 NLSPDGQYVPRIMFVDPSLTVRADIAGRYSNRLYTYEPRDLPLLIENM  140 (151)
T ss_dssp             GGCTTCCCSSEEEEECTTSCBCTTCCCSCTTSTTCCCGGGHHHHHHHH
T ss_pred             HhhcCCCCCCEEEEECCCCCEEEEEeCCcCCcccccchhhHHHHHHHH
Confidence            45778999999987   465  234687       5555555555544

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=89.68  E-value=0.54  Score=32.42  Aligned_cols=38  Identities=18%  Similarity=0.239  Sum_probs=28.2

Q ss_pred             HHHhCCC---CeecEEEE---CCee--eecC-------CCCHHHHHHHHHHHh
Q 027910          179 KKYSANI---SGVPHFVL---NGKH--ELSG-------GQPPEVYLRAFQVAA  216 (217)
Q Consensus       179 ~a~~~gv---~g~Pt~vv---~g~~--~~~G-------~~~~~~l~~~i~~~~  216 (217)
                      .+...||   .|+||+++   +|+.  ...|       ..+.+.+.+.|+++.
T Consensus        80 l~~~~~v~~~~~~Pt~~~~d~~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~l~  132 (133)
T 3fk8_A           80 LSQAYGDPIQDGIPAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFAKIT  132 (133)
T ss_dssp             HHHHTTCGGGGCSSEEEEECTTSCEEEECCSCTTTTGGGSCHHHHHHHHHHHH
T ss_pred             HHHHhCCccCCccceEEEECCCCCEEEEecCCcccccccCCHHHHHHHHHHhc
Confidence            5567788   99999987   4652  2356       568899999988764

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.62  E-value=0.34  Score=33.01  Aligned_cols=38  Identities=11%  Similarity=0.088  Sum_probs=23.0

Q ss_pred             ceEEEEEecccCchhhhhH--HHHHHHHHhcCCCCceeEEEeec
Q 027910           13 LIRIDVSSDTVCPWCFVGK--RNLDKAIASSKDQYDFEIRWHPF   54 (217)
Q Consensus        13 ~v~i~~y~D~~CP~cy~~~--~~l~~~~~~~~~~~~v~v~~~p~   54 (217)
                      .++|++|+-..||+|....  ..+++++++    .++.++.+.+
T Consensus         7 ~m~V~vy~~~~C~~C~~~~~~~~ak~~L~~----~gi~y~~vdI   46 (111)
T 2ct6_A            7 GMVIRVFIASSSGFVAIKKKQQDVVRFLEA----NKIEFEEVDI   46 (111)
T ss_dssp             CCCEEEEECSSCSCHHHHHHHHHHHHHHHH----TTCCEEEEET
T ss_pred             ccEEEEEEcCCCCCcccchhHHHHHHHHHH----cCCCEEEEEC
Confidence            3678899999999999311  123334443    3466555544

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=89.17  E-value=0.065  Score=35.24  Aligned_cols=32  Identities=6%  Similarity=-0.081  Sum_probs=26.2

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~   42 (217)
                      ..+..|.+|+.+.||+|....+.+.++.++++
T Consensus        18 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~   49 (106)
T 2yj7_A           18 SDKPVLVDFWAPWCGPCRMIAPIIEELAKEYE   49 (106)
Confidence            34667888889999999999999988877654

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=89.58  E-value=0.21  Score=31.39  Aligned_cols=23  Identities=26%  Similarity=0.616  Sum_probs=18.7

Q ss_pred             eEEEEEecccCchhhhhHHHHHH
Q 027910           14 IRIDVSSDTVCPWCFVGKRNLDK   36 (217)
Q Consensus        14 v~i~~y~D~~CP~cy~~~~~l~~   36 (217)
                      |+|.+|+.+.||+|..+.+.|.+
T Consensus         1 m~v~~f~~~~C~~C~~~~~~l~~   23 (81)
T 1h75_A            1 MRITIYTRNDCVQCHATKRAMEN   23 (81)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCChhHHHHHHHHHH
Confidence            46888999999999987776653

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=89.34  E-value=0.58  Score=33.27  Aligned_cols=40  Identities=15%  Similarity=-0.038  Sum_probs=30.2

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEE
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRW   51 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~   51 (217)
                      ..++.|.+|+..-||.|-...+.|.++.++|++. ++.+..
T Consensus        34 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~vv~   73 (152)
T 2lrt_A           34 KGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQ-GFEIYQ   73 (152)
T ss_dssp             GGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG-TEEEEE
T ss_pred             CCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccC-CeEEEE
Confidence            3456666677789999999999999999988742 455543

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=89.31  E-value=0.15  Score=33.10  Aligned_cols=22  Identities=18%  Similarity=0.348  Sum_probs=18.1

Q ss_pred             EEEEEecccCchhhhhHHHHHH
Q 027910           15 RIDVSSDTVCPWCFVGKRNLDK   36 (217)
Q Consensus        15 ~i~~y~D~~CP~cy~~~~~l~~   36 (217)
                      +|.+|+.+.||+|..+...|.+
T Consensus        13 ~v~ly~~~~Cp~C~~~~~~L~~   34 (92)
T 3ic4_A           13 EVLMYGLSTCPHCKRTLEFLKR   34 (92)
T ss_dssp             SSEEEECTTCHHHHHHHHHHHH
T ss_pred             eEEEEECCCChHHHHHHHHHHH
Confidence            4778999999999997776654

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=89.31  E-value=0.3  Score=31.41  Aligned_cols=32  Identities=19%  Similarity=0.170  Sum_probs=22.9

Q ss_pred             EEEEecc----cCchhhhhHHHHHHHHHhcCCCCceeEEEeecc
Q 027910           16 IDVSSDT----VCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF   55 (217)
Q Consensus        16 i~~y~D~----~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~   55 (217)
                      |.+|+-.    .||||..+...|.+        .++.++++.+.
T Consensus         2 v~iY~~~~~~~~Cp~C~~ak~~L~~--------~gi~y~~idI~   37 (87)
T 1aba_A            2 FKVYGYDSNIHKCGPCDNAKRLLTV--------KKQPFEFINIM   37 (87)
T ss_dssp             EEEEECCTTTSCCHHHHHHHHHHHH--------TTCCEEEEESC
T ss_pred             EEEEEeCCCCCcCccHHHHHHHHHH--------cCCCEEEEEee
Confidence            6778888    99999987776643        24666666554

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=89.21  E-value=0.35  Score=33.58  Aligned_cols=55  Identities=11%  Similarity=0.038  Sum_probs=32.9

Q ss_pred             HHHHHHHHHcCCCcccc---cccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHH
Q 027910          146 EFLVECARKVGVEGAAE---FLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPE  206 (217)
Q Consensus       146 ~~L~~ia~~~Gld~~~~---~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~  206 (217)
                      ....++..+.|++...+   .+.+.   ..+++....  ..|...+|.++|||+ .|.|.+...
T Consensus        35 ~~ak~lL~~~gv~~~~~~~~dv~~~---~~~~~~l~~--~sg~~tvP~vfI~g~-~iGG~d~l~   92 (121)
T 3gx8_A           35 RATIGLLGNQGVDPAKFAAYNVLED---PELREGIKE--FSEWPTIPQLYVNKE-FIGGCDVIT   92 (121)
T ss_dssp             HHHHHHHHHHTBCGGGEEEEECTTC---HHHHHHHHH--HHTCCSSCEEEETTE-EEESHHHHH
T ss_pred             HHHHHHHHHcCCCcceEEEEEecCC---HHHHHHHHH--HhCCCCCCeEEECCE-EEecHHHHH
Confidence            45666777788875444   22221   223333222  237788999999999 567775443

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=89.21  E-value=0.43  Score=41.59  Aligned_cols=39  Identities=21%  Similarity=0.201  Sum_probs=32.5

Q ss_pred             HHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHHH
Q 027910          176 EELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQV  214 (217)
Q Consensus       176 ~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~~  214 (217)
                      ..+.+.+.||.++||+++||+....|..+.+.+.+.|++
T Consensus       159 ~~~~~~~~~i~svPt~~i~g~~~~~G~~~~~~l~~~l~~  197 (521)
T 1hyu_A          159 FQNEITERNVMGVPAVFVNGKEFGQGRMTLTEIVAKVDT  197 (521)
T ss_dssp             CHHHHHHTTCCSSSEEEETTEEEEESCCCHHHHHHHHCC
T ss_pred             hHHHHHHhCCCccCEEEECCEEEecCCCCHHHHHHHHhh
Confidence            344677899999999999999766899999999888754

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=89.15  E-value=0.36  Score=32.87  Aligned_cols=30  Identities=13%  Similarity=-0.046  Sum_probs=23.5

Q ss_pred             cceEEEEEecccCchhhhhHHHHHHHHHhc
Q 027910           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASS   41 (217)
Q Consensus        12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~   41 (217)
                      .+..|.+|+..-||+|....+.+.++.+++
T Consensus        23 ~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~   52 (118)
T 2f51_A           23 PGLVLVDFFATWCGPCQRLGQILPSIAEAN   52 (118)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHC
Confidence            456777777888999998888888877765

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=89.15  E-value=0.38  Score=32.17  Aligned_cols=32  Identities=16%  Similarity=0.050  Sum_probs=27.5

Q ss_pred             cceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD   43 (217)
Q Consensus        12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~   43 (217)
                      .+..+.+|+.+-||+|....+.+.++.+++..
T Consensus        24 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~   55 (120)
T 1mek_A           24 HKYLLVEFYAPWCGHCKALAPEYAKAAGKLKA   55 (120)
T ss_dssp             CSEEEEEEECSSCSTTSTTHHHHHHHHHTTTT
T ss_pred             CCeEEEEEECCCCHHHHHhhHHHHHHHHHHhc
Confidence            45678888899999999999999999887763

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=89.05  E-value=0.5  Score=33.52  Aligned_cols=31  Identities=13%  Similarity=0.020  Sum_probs=24.3

Q ss_pred             cceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (217)
Q Consensus        12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~   42 (217)
                      .+..|..|+-.-||.|....+.+.++.++|.
T Consensus        23 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~   53 (142)
T 1qgv_A           23 DRVVVIRFGHDWDPTCMKMDEVLYSIAEKVK   53 (142)
T ss_dssp             SSEEEEEEECTTSHHHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhC
Confidence            4556666677889999999999888887764

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=88.85  E-value=0.28  Score=33.26  Aligned_cols=39  Identities=10%  Similarity=-0.003  Sum_probs=28.3

Q ss_pred             HHHHhCCCCeecEEEE--CC-e-eeecCC----CCHHHHHHHHHHHh
Q 027910          178 LKKYSANISGVPHFVL--NG-K-HELSGG----QPPEVYLRAFQVAA  216 (217)
Q Consensus       178 ~~a~~~gv~g~Pt~vv--~g-~-~~~~G~----~~~~~l~~~i~~~~  216 (217)
                      +.+.+.||.++||+++  +| + ..+.|.    .+.+.|.+.|+++.
T Consensus        66 ~~~~~~~v~~~Pt~~~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~l  112 (122)
T 3aps_A           66 QTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKL  112 (122)
T ss_dssp             HHHHHTTCCSSSEEEEEEEEGGGTEEEEEEECCSCHHHHHHHHHHHH
T ss_pred             HHHHHcCCCccceEEEEeCCCccceeeccccCcCCHHHHHHHHHHHH
Confidence            4567899999999987  23 2 224554    78899999888653

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=88.76  E-value=0.36  Score=32.92  Aligned_cols=32  Identities=13%  Similarity=0.011  Sum_probs=26.2

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~   42 (217)
                      ..+..|.+|+.+-||+|....+.+.++.++|+
T Consensus        32 ~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~   63 (121)
T 2j23_A           32 GDKVVVIDFWATWCGPCKMIGPVFEKISDTPA   63 (121)
T ss_dssp             SSSCEEEEEECTTCSTHHHHHHHHHHHHTSTH
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHHHCc
Confidence            34567778888999999999999998877654

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=88.54  E-value=0.75  Score=35.10  Aligned_cols=40  Identities=13%  Similarity=0.181  Sum_probs=31.6

Q ss_pred             HHHHHhCCCCeecEEEE--CCee-eecCCCCHHHHHHHHHHHh
Q 027910          177 ELKKYSANISGVPHFVL--NGKH-ELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       177 ~~~a~~~gv~g~Pt~vv--~g~~-~~~G~~~~~~l~~~i~~~~  216 (217)
                      .+.+.+.||.++||+++  +|+. .+.|..+.+.+.+.|.+..
T Consensus       194 ~~l~~~~~v~~~Pt~~~~~~g~~~~~~g~~~~~~l~~~l~~~~  236 (241)
T 3idv_A          194 TDLAKRFDVSGYPTLKIFRKGRPYDYNGPREKYGIVDYMIEQS  236 (241)
T ss_dssp             HHHHHHTTCCSSSEEEEEETTEEEECCSCCSHHHHHHHHHHHT
T ss_pred             HHHHHHcCCcccCEEEEEECCeEEEecCCCCHHHHHHHHHhhh
Confidence            34678899999999988  6663 3578899999999988653

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=88.52  E-value=0.65  Score=31.19  Aligned_cols=31  Identities=13%  Similarity=-0.028  Sum_probs=25.5

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhc
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASS   41 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~   41 (217)
                      ..+..|..|+..-||+|....+.+.++.++|
T Consensus        32 ~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~   62 (117)
T 2xc2_A           32 KNKLVVVDFFATWCGPCKTIAPLFKELSEKY   62 (117)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHTTS
T ss_pred             CCCEEEEEEECCCCHhHHHHhHHHHHHHHHc
Confidence            4567778888899999999999999887644

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=88.50  E-value=0.9  Score=30.77  Aligned_cols=36  Identities=11%  Similarity=0.157  Sum_probs=25.0

Q ss_pred             HHHhCCCCeecEEEE--C----Cee--eecCCCCHHHHHHHHHHH
Q 027910          179 KKYSANISGVPHFVL--N----GKH--ELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~----g~~--~~~G~~~~~~l~~~i~~~  215 (217)
                      .+.+.||.++||+++  +    |+.  .+.|..+ +.+++.|++.
T Consensus        68 ~~~~~~i~~~Pt~~~~~~~~~~G~~~~~~~G~~~-~~l~~~~~~~  111 (118)
T 2f51_A           68 AADAYGVSSIPALFFVKKEGNEIKTLDQFVGADV-SRIKADIEKF  111 (118)
T ss_dssp             HHHHTTCCSSSEEEEEEEETTEEEEEEEEESCCH-HHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEEeCCCCcceEEEeecCCCH-HHHHHHHHHh
Confidence            456778999999977  4    542  3568754 5588887764

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=88.49  E-value=0.34  Score=32.32  Aligned_cols=24  Identities=21%  Similarity=0.412  Sum_probs=19.4

Q ss_pred             ceEEEEEecccCchhhhhHHHHHH
Q 027910           13 LIRIDVSSDTVCPWCFVGKRNLDK   36 (217)
Q Consensus        13 ~v~i~~y~D~~CP~cy~~~~~l~~   36 (217)
                      +.+|.+|+-..||+|..+.+.|.+
T Consensus        21 ~~~v~ly~~~~Cp~C~~ak~~L~~   44 (103)
T 3nzn_A           21 RGKVIMYGLSTCVWCKKTKKLLTD   44 (103)
T ss_dssp             CSCEEEEECSSCHHHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCchHHHHHHHHHH
Confidence            345778999999999998877754

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=88.06  E-value=0.48  Score=31.97  Aligned_cols=33  Identities=27%  Similarity=0.423  Sum_probs=26.2

Q ss_pred             CCCeecEEEE--CC-e---eeecCCCCHHHHHHHHHHHh
Q 027910          184 NISGVPHFVL--NG-K---HELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       184 gv~g~Pt~vv--~g-~---~~~~G~~~~~~l~~~i~~~~  216 (217)
                      +|.++||+++  +| +   ..+.|..+.+.|.+.|++..
T Consensus        78 ~v~~~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~  116 (121)
T 2djj_A           78 EIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENG  116 (121)
T ss_dssp             CCSSSSEEEEECSSCTTSCCCCCCCSCHHHHHHHHHHTS
T ss_pred             ccCcCCeEEEEeCcCCCCceEecCCCCHHHHHHHHHhcc
Confidence            9999999987  33 3   24578889999999998753

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.99  E-value=0.58  Score=31.81  Aligned_cols=54  Identities=7%  Similarity=-0.099  Sum_probs=31.8

Q ss_pred             HHHHHHHHcCCCcccccccCcccchhHHHHHHHHH------hCCCCeecEEEECCeeeecCCCC
Q 027910          147 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKY------SANISGVPHFVLNGKHELSGGQP  204 (217)
Q Consensus       147 ~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~------~~gv~g~Pt~vv~g~~~~~G~~~  204 (217)
                      .+.+++++.|++-+...+...   ...++......      ..|...+|.++|||+ .+.|.+.
T Consensus        29 ~ak~~L~~~gi~y~~vdI~~~---~~~~~~l~~~~~~~~~~~~g~~tvP~vfi~g~-~iGG~d~   88 (111)
T 2ct6_A           29 DVVRFLEANKIEFEEVDITMS---EEQRQWMYKNVPPEKKPTQGNPLPPQIFNGDR-YCGDYDS   88 (111)
T ss_dssp             HHHHHHHHTTCCEEEEETTTC---HHHHHHHHHSCCTTTCCSSSSCCSCEEEETTE-EEEEHHH
T ss_pred             HHHHHHHHcCCCEEEEECCCC---HHHHHHHHHHhcccccccCCCCCCCEEEECCE-EEeCHHH
Confidence            567777888887665533321   12222222211      027889999999999 4666644

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=87.97  E-value=0.72  Score=32.24  Aligned_cols=29  Identities=17%  Similarity=0.173  Sum_probs=22.8

Q ss_pred             ceEEEEEecccCchhhhhHHHHHHHHHhc
Q 027910           13 LIRIDVSSDTVCPWCFVGKRNLDKAIASS   41 (217)
Q Consensus        13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~   41 (217)
                      +..|..|+.+-||.|....+.+.++.++|
T Consensus        31 ~~vvv~f~a~wC~~C~~~~p~l~~la~~~   59 (135)
T 2dbc_A           31 LWVVIHLYRSSVPMCLVVNQHLSVLARKF   59 (135)
T ss_dssp             CEEEEEECCTTCHHHHHHHHHHHHHHHHC
T ss_pred             CEEEEEEECCCChHHHHHHHHHHHHHHHC
Confidence            56677777788888888888888877765

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=87.87  E-value=0.94  Score=30.93  Aligned_cols=37  Identities=8%  Similarity=0.147  Sum_probs=27.9

Q ss_pred             cceEEEEEecc-------cCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910           12 KLIRIDVSSDT-------VCPWCFVGKRNLDKAIASSKDQYDFEIR   50 (217)
Q Consensus        12 ~~v~i~~y~D~-------~CP~cy~~~~~l~~~~~~~~~~~~v~v~   50 (217)
                      .+..+..|+-.       -||.|....+.+.++.++|++  ++.+.
T Consensus        24 ~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~--~~~~~   67 (123)
T 1wou_A           24 GKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE--GCVFI   67 (123)
T ss_dssp             TSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT--TEEEE
T ss_pred             CCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCC--CcEEE
Confidence            45566666667       999999999999998887753  44444

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=87.83  E-value=0.37  Score=30.19  Aligned_cols=22  Identities=23%  Similarity=0.705  Sum_probs=17.9

Q ss_pred             EEEEEecccCchhhhhHHHHHH
Q 027910           15 RIDVSSDTVCPWCFVGKRNLDK   36 (217)
Q Consensus        15 ~i~~y~D~~CP~cy~~~~~l~~   36 (217)
                      +|.+|+.+.||+|..+...|.+
T Consensus         2 ~i~~y~~~~C~~C~~~~~~l~~   23 (82)
T 1fov_A            2 NVEIYTKETCPYCHRAKALLSS   23 (82)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCChhHHHHHHHHHH
Confidence            4678999999999987776654

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=87.61  E-value=0.99  Score=31.29  Aligned_cols=37  Identities=8%  Similarity=-0.195  Sum_probs=28.8

Q ss_pred             cceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEE
Q 027910           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRW   51 (217)
Q Consensus        12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~   51 (217)
                      .+..|.+|+..-||+|....+.+.++.++|+   ++.+..
T Consensus        46 ~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~---~v~~~~   82 (139)
T 3d22_A           46 GKIVLANFSARWCGPSRQIAPYYIELSENYP---SLMFLV   82 (139)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEE
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHCC---CCEEEE
Confidence            4566777777999999999999999988874   355443

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=86.91  E-value=0.57  Score=32.55  Aligned_cols=32  Identities=19%  Similarity=0.095  Sum_probs=27.8

Q ss_pred             cceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD   43 (217)
Q Consensus        12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~   43 (217)
                      .+..|.+|+..-||+|....+.+.++.++|.+
T Consensus        34 ~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~   65 (140)
T 2dj1_A           34 KDTVLLEFYAPWCGHCKQFAPEYEKIASTLKD   65 (140)
T ss_dssp             CSEEEEEECCTTCHHHHTTHHHHHHHHHHHHS
T ss_pred             CCeEEEEEECCCCHHHHHhhHHHHHHHHHHhc
Confidence            46788889999999999999999998887764

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=86.89  E-value=0.55  Score=32.38  Aligned_cols=34  Identities=15%  Similarity=0.094  Sum_probs=25.5

Q ss_pred             HhCCCCeecEEEE--CCee--eecCCC-------CHHHHHHHHHH
Q 027910          181 YSANISGVPHFVL--NGKH--ELSGGQ-------PPEVYLRAFQV  214 (217)
Q Consensus       181 ~~~gv~g~Pt~vv--~g~~--~~~G~~-------~~~~l~~~i~~  214 (217)
                      .+.+|.++|||++  ||+.  .+.|..       +.+.++..|.+
T Consensus        67 ~~~~v~~~PT~~~fk~G~~v~~~~G~~~~gg~~~~~~~le~~L~~  111 (118)
T 3evi_A           67 QHYHDNCLPTIFVYKNGQIEAKFIGIIECGGINLKLEELEWKLAE  111 (118)
T ss_dssp             TTCCGGGCSEEEEEETTEEEEEEESTTTTTCSSCCHHHHHHHHHT
T ss_pred             HHCCCCCCCEEEEEECCEEEEEEeChhhhCCCCCCHHHHHHHHHH
Confidence            5679999999988  7762  346664       57888888864

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=86.89  E-value=0.25  Score=33.83  Aligned_cols=32  Identities=9%  Similarity=-0.064  Sum_probs=27.0

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~   42 (217)
                      ..+..|.+|+..-||+|....+.+.++.++|+
T Consensus        35 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~   66 (130)
T 1wmj_A           35 AGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP   66 (130)
T ss_dssp             TTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT
T ss_pred             cCCEEEEEEECCCChhHHHHHHHHHHHHHHCC
Confidence            34567888889999999999999999888764

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=86.73  E-value=0.93  Score=34.55  Aligned_cols=39  Identities=15%  Similarity=0.328  Sum_probs=30.3

Q ss_pred             HHHHhCCCCeecEEEE--CCe-eeecCCCCHHHHHHHHHHHh
Q 027910          178 LKKYSANISGVPHFVL--NGK-HELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       178 ~~a~~~gv~g~Pt~vv--~g~-~~~~G~~~~~~l~~~i~~~~  216 (217)
                      +.+.+.||.|+||+++  +|+ ....|..+.+.+.+.|++..
T Consensus        80 ~l~~~~~v~~~Pt~~~~~~g~~~~~~g~~~~~~l~~~i~~~~  121 (241)
T 3idv_A           80 VLASRFDVSGYPTIKILKKGQAVDYEGSRTQEEIVAKVREVS  121 (241)
T ss_dssp             HHHHHTTCCSSSEEEEEETTEEEECCSCSCHHHHHHHHHHHH
T ss_pred             HHHHhcCCCcCCEEEEEcCCCcccccCcccHHHHHHHHhhcc
Confidence            3567889999999987  565 23478889999999888653

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=86.56  E-value=0.17  Score=34.79  Aligned_cols=63  Identities=16%  Similarity=0.187  Sum_probs=37.5

Q ss_pred             CHHHHHHHHHHcCCCcccc-cccCcccchhHHHHHHHHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHHh
Q 027910          144 DKEFLVECARKVGVEGAAE-FLDDPNSGLNEVHEELKKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       144 ~~~~L~~ia~~~Gld~~~~-~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~~  216 (217)
                      -...|.+++.... + -.+ .++-++.       .+.+.+.|+.++||+++  +|+.  .+.|. +.+.|.+.|+++.
T Consensus        54 ~~~~l~~~~~~~~-~-v~~~~v~~~~~-------~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~l~~~~  121 (130)
T 1wmj_A           54 IAPVFAEYAKKFP-G-AVFLKVDVDEL-------KEVAEKYNVEAMPTFLFIKDGAEADKVVGA-RKDDLQNTIVKHV  121 (130)
T ss_dssp             SHHHHHHHHHHCT-T-BCCEECCTTTS-------GGGHHHHTCCSSCCCCBCTTTTCCBCCCTT-CTTTHHHHHHHHT
T ss_pred             HHHHHHHHHHHCC-C-CEEEEEeccch-------HHHHHHcCCCccceEEEEeCCeEEEEEeCC-CHHHHHHHHHHHH
Confidence            3556667766653 1 122 3332221       12345679999999988  6652  24674 6678888887654

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=86.09  E-value=0.86  Score=34.78  Aligned_cols=39  Identities=10%  Similarity=-0.033  Sum_probs=31.0

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEE
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRW   51 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~   51 (217)
                      ..++.|..|+.+-||+|....+.+.++.++|++  .+.+..
T Consensus        29 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~   67 (222)
T 3dxb_A           29 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAK   67 (222)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEEE
T ss_pred             cCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcC--CcEEEE
Confidence            356777788889999999999999999998875  355443

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=86.01  E-value=0.29  Score=32.61  Aligned_cols=27  Identities=22%  Similarity=0.426  Sum_probs=21.4

Q ss_pred             CCcceEEEEEecccCchhhhhHHHHHH
Q 027910           10 GKKLIRIDVSSDTVCPWCFVGKRNLDK   36 (217)
Q Consensus        10 ~~~~v~i~~y~D~~CP~cy~~~~~l~~   36 (217)
                      ....+.|.+|+-..||+|..+.+.|.+
T Consensus        13 ~~~~~~v~~f~~~~C~~C~~~~~~L~~   39 (100)
T 1wjk_A           13 NRALPVLTLFTKAPCPLCDEAKEVLQP   39 (100)
T ss_dssp             CCCCCEEEEEECSSCHHHHHHHHHTST
T ss_pred             cCCCCEEEEEeCCCCcchHHHHHHHHH
Confidence            345567888999999999998877654

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=85.26  E-value=0.47  Score=30.85  Aligned_cols=24  Identities=17%  Similarity=0.325  Sum_probs=20.1

Q ss_pred             eEEEEEecccCchhhhhHHHHHHH
Q 027910           14 IRIDVSSDTVCPWCFVGKRNLDKA   37 (217)
Q Consensus        14 v~i~~y~D~~CP~cy~~~~~l~~~   37 (217)
                      ++|+.|+-+.||+|-.+.+.|.++
T Consensus         1 m~vv~f~a~~C~~C~~~~~~L~~~   24 (87)
T 1ttz_A            1 MALTLYQRDDCHLCDQAVEALAQA   24 (87)
T ss_dssp             -CEEEEECSSCHHHHHHHHHHHHT
T ss_pred             CEEEEEECCCCchHHHHHHHHHHH
Confidence            468999999999999998888654

>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12

Probab=85.23  E-value=0.63  Score=31.85  Aligned_cols=32  Identities=13%  Similarity=0.126  Sum_probs=24.6

Q ss_pred             EEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecc
Q 027910           16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF   55 (217)
Q Consensus        16 i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~   55 (217)
                      |.+|+-+.||+|..+...|.+        .++.++++.+.
T Consensus         2 i~iY~~~~C~~C~kak~~L~~--------~gi~~~~~di~   33 (114)
T 1rw1_A            2 YVLYGIKACDTMKKARTWLDE--------HKVAYDFHDYK   33 (114)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH--------TTCCEEEEEHH
T ss_pred             EEEEECCCChHHHHHHHHHHH--------CCCceEEEeec
Confidence            778999999999988776653        35777777664

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=85.40  E-value=0.17  Score=34.91  Aligned_cols=36  Identities=8%  Similarity=0.098  Sum_probs=26.7

Q ss_pred             cccCCcceEEEEEecccCchhhhhHHHH---HHHHHhcC
Q 027910            7 SSAGKKLIRIDVSSDTVCPWCFVGKRNL---DKAIASSK   42 (217)
Q Consensus         7 ~~~~~~~v~i~~y~D~~CP~cy~~~~~l---~~~~~~~~   42 (217)
                      ......+..|.+|+.+-||+|....+.+   .++.+.+.
T Consensus        14 ~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~   52 (130)
T 2lst_A           14 LAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLE   52 (130)
Confidence            3344557788888899999999999888   66655443

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.00  E-value=1.3  Score=30.12  Aligned_cols=35  Identities=14%  Similarity=0.155  Sum_probs=27.5

Q ss_pred             EEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910           15 RIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR   50 (217)
Q Consensus        15 ~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~   50 (217)
                      .|..|+..-||+|....+.+.++.+++++ .++.+.
T Consensus        25 vlv~f~a~wC~~C~~~~p~~~~~~~~~~~-~~v~~~   59 (126)
T 1x5e_A           25 WMIEFYAPWCPACQNLQPEWESFAEWGED-LEVNIA   59 (126)
T ss_dssp             EEEEEECSSCHHHHHHHHHHHHHHHHHGG-GTCEEE
T ss_pred             EEEEEECCCCHHHHHHhHHHHHHHHHhcc-CCeEEE
Confidence            67888889999999999999998887752 234444

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=84.71  E-value=1.1  Score=32.18  Aligned_cols=42  Identities=14%  Similarity=0.142  Sum_probs=31.7

Q ss_pred             CcceEEEEEecccCch-hhhhHHHHHHHHHhcCCC--CceeEEEe
Q 027910           11 KKLIRIDVSSDTVCPW-CFVGKRNLDKAIASSKDQ--YDFEIRWH   52 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~-cy~~~~~l~~~~~~~~~~--~~v~v~~~   52 (217)
                      ..++.|.+|+-.-||. |-...+.|.++.++|+..  .++.+...
T Consensus        34 ~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~i   78 (172)
T 2k6v_A           34 QDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFV   78 (172)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEE
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEE
Confidence            4567888888899996 999999999998877632  14665543

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=84.65  E-value=1.6  Score=36.24  Aligned_cols=39  Identities=21%  Similarity=0.174  Sum_probs=30.9

Q ss_pred             HHHHhCCCCeecEEEE--CCee---eecCCCCHHHHHHHHHHHh
Q 027910          178 LKKYSANISGVPHFVL--NGKH---ELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       178 ~~a~~~gv~g~Pt~vv--~g~~---~~~G~~~~~~l~~~i~~~~  216 (217)
                      ..+.+.||.|+||+++  +|+.   .+.|..+.+.|.+.|.+..
T Consensus        73 ~l~~~~~v~~~Pt~~~f~~G~~~~~~~~G~~~~~~l~~~i~~~~  116 (382)
T 2r2j_A           73 DIAQRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQK  116 (382)
T ss_dssp             HHHHHTTCCEESEEEEEETTEEEEEECCSCCSHHHHHHHHHHHH
T ss_pred             HHHHhcCCCcCCEEEEEeCCcEeeeeecCcchHHHHHHHHHHhc
Confidence            4567889999999988  6763   2579999999999887653

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=84.65  E-value=0.93  Score=30.70  Aligned_cols=22  Identities=18%  Similarity=0.474  Sum_probs=17.9

Q ss_pred             eEEEEEecccCchhhhhHHHHH
Q 027910           14 IRIDVSSDTVCPWCFVGKRNLD   35 (217)
Q Consensus        14 v~i~~y~D~~CP~cy~~~~~l~   35 (217)
                      ..|.+|+.+.||+|..+.+.|.
T Consensus        19 ~~vv~f~~~~Cp~C~~~~~~L~   40 (114)
T 2hze_A           19 NKVTIFVKYTCPFCRNALDILN   40 (114)
T ss_dssp             TCEEEEECTTCHHHHHHHHHHT
T ss_pred             CCEEEEEeCCChhHHHHHHHHH
Confidence            4588899999999998777654

>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12

Probab=84.25  E-value=1  Score=31.12  Aligned_cols=32  Identities=16%  Similarity=0.304  Sum_probs=25.0

Q ss_pred             EEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecc
Q 027910           16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF   55 (217)
Q Consensus        16 i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~   55 (217)
                      |.+|+-+.||+|..+...|.+        .++.++++.+.
T Consensus         2 i~iY~~~~C~~c~ka~~~L~~--------~gi~~~~~di~   33 (120)
T 3l78_A            2 VTLFLSPSCTSCRKARAWLNR--------HDVVFQEHNIM   33 (120)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH--------TTCCEEEEETT
T ss_pred             EEEEeCCCCHHHHHHHHHHHH--------cCCCeEEEecc
Confidence            689999999999998876652        35777777665

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=83.90  E-value=1.6  Score=34.18  Aligned_cols=39  Identities=15%  Similarity=0.146  Sum_probs=30.3

Q ss_pred             HHHHHhCCCC--eecEEEE--CCe----eeecCCCCHHHHHHHHHHH
Q 027910          177 ELKKYSANIS--GVPHFVL--NGK----HELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       177 ~~~a~~~gv~--g~Pt~vv--~g~----~~~~G~~~~~~l~~~i~~~  215 (217)
                      ...+.+.||.  |+|||++  +|+    ..+.|..+.+.|.+.|++.
T Consensus        71 ~~l~~~~~V~~~~~PTl~~f~~G~~~~~~~y~G~~~~~~L~~fi~~~  117 (240)
T 2qc7_A           71 MELSEKYKLDKESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWLKGQ  117 (240)
T ss_dssp             HHHHHHTTCCGGGCSEEEEEETTCSSCCEECCSCSCHHHHHHHHHHT
T ss_pred             HHHHHHcCCCCCCCCEEEEEeCCCcCcceeecCCCCHHHHHHHHHHh
Confidence            3457789999  9999987  565    3457988999999888753

>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0

Probab=83.76  E-value=0.58  Score=32.47  Aligned_cols=34  Identities=15%  Similarity=0.162  Sum_probs=26.1

Q ss_pred             eEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecc
Q 027910           14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF   55 (217)
Q Consensus        14 v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~   55 (217)
                      |.|.+|+-+.||+|..+...|.+        .++.++++.+.
T Consensus         4 M~i~iY~~p~C~~c~ka~~~L~~--------~gi~~~~~di~   37 (120)
T 3gkx_A            4 MKTLFLQYPACSTCQKAKKWLIE--------NNIEYTNRLIV   37 (120)
T ss_dssp             CCCEEEECTTCHHHHHHHHHHHH--------TTCCCEEEETT
T ss_pred             cEEEEEECCCChHHHHHHHHHHH--------cCCceEEEecc
Confidence            45889999999999998776652        35777777665

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=83.74  E-value=0.78  Score=31.47  Aligned_cols=37  Identities=16%  Similarity=0.292  Sum_probs=26.6

Q ss_pred             HHhCCCCeecEEEE--CCe----eeec-CCCCHHHHHHHHHHHh
Q 027910          180 KYSANISGVPHFVL--NGK----HELS-GGQPPEVYLRAFQVAA  216 (217)
Q Consensus       180 a~~~gv~g~Pt~vv--~g~----~~~~-G~~~~~~l~~~i~~~~  216 (217)
                      +.+.||.++||+++  +|+    ..+. |..+.+.|.+.|++..
T Consensus        74 ~~~~~v~~~Pt~~~~~~g~~~~~~~~~gg~~~~~~l~~~l~~~~  117 (133)
T 2dj3_A           74 NDQYKVEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHA  117 (133)
T ss_dssp             CSSCCCSSSSEEEEECTTCTTSCEECCSSCCSTTHHHHHHHHHS
T ss_pred             HhhcCCCcCCEEEEEeCCCcccceEecCCCcCHHHHHHHHHHhc
Confidence            34689999999987  332    1234 6578899999888653

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=83.67  E-value=0.96  Score=31.45  Aligned_cols=38  Identities=11%  Similarity=0.058  Sum_probs=29.4

Q ss_pred             HHHhCCCCe--ecEEEE--C--Ce-eeec--CCCCHHHHHHHHHHHh
Q 027910          179 KKYSANISG--VPHFVL--N--GK-HELS--GGQPPEVYLRAFQVAA  216 (217)
Q Consensus       179 ~a~~~gv~g--~Pt~vv--~--g~-~~~~--G~~~~~~l~~~i~~~~  216 (217)
                      .+..+||.+  +||+++  +  |+ |.+.  |..+.+.+.+.|++..
T Consensus        68 ~a~~~gi~~~~iPtl~i~~~~~g~~~~~~~~g~~~~~~l~~fi~~~l  114 (133)
T 2djk_A           68 HAGNLNLKTDKFPAFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFV  114 (133)
T ss_dssp             GTTTTTCCSSSSSEEEEECTTTCCBCCCCSSSCCCHHHHHHHHHHHH
T ss_pred             HHHHcCCCcccCCEEEEEecCcCcccCCCCccccCHHHHHHHHHHHH
Confidence            467899999  999977  3  43 4454  9999999999888653

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=83.66  E-value=1.5  Score=30.34  Aligned_cols=30  Identities=7%  Similarity=-0.237  Sum_probs=26.3

Q ss_pred             ceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910           13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (217)
Q Consensus        13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~   42 (217)
                      ++.|..|+..-||.|....+.+.++.++|.
T Consensus        27 ~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~   56 (137)
T 2dj0_A           27 VTWIVEFFANWSNDCQSFAPIYADLSLKYN   56 (137)
T ss_dssp             SCEEEEECCTTCSTTTTTHHHHHHHHHHHC
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHHhC
Confidence            467788888999999999999999988886

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=83.45  E-value=2.1  Score=29.69  Aligned_cols=29  Identities=3%  Similarity=-0.176  Sum_probs=19.4

Q ss_pred             EEEEecccCchhhhhHHHHHHHHHhcCCCC
Q 027910           16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQY   45 (217)
Q Consensus        16 i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~   45 (217)
                      -.++.+|..|||-.-..... .++++..++
T Consensus        31 ~~vvv~f~a~wC~~C~~~~p-~l~~la~~~   59 (135)
T 2dbc_A           31 LWVVIHLYRSSVPMCLVVNQ-HLSVLARKF   59 (135)
T ss_dssp             CEEEEEECCTTCHHHHHHHH-HHHHHHHHC
T ss_pred             CEEEEEEECCCChHHHHHHH-HHHHHHHHC
Confidence            35788899999987776544 445554433

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=83.28  E-value=2.1  Score=34.98  Aligned_cols=40  Identities=20%  Similarity=0.050  Sum_probs=32.3

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR   50 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~   50 (217)
                      ..+..+..|+.+-||+|....+.+.++.+.|++..++.+.
T Consensus       266 ~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~  305 (361)
T 3uem_A          266 EKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIA  305 (361)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEE
T ss_pred             CCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEE
Confidence            4567888899999999999999999999988754444444

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=83.25  E-value=0.67  Score=31.55  Aligned_cols=21  Identities=24%  Similarity=0.355  Sum_probs=17.2

Q ss_pred             EEEEEecccCchhhhhHHHHH
Q 027910           15 RIDVSSDTVCPWCFVGKRNLD   35 (217)
Q Consensus        15 ~i~~y~D~~CP~cy~~~~~l~   35 (217)
                      +|.+|+-+.||||..+.+.|.
T Consensus        18 ~v~vy~~~~Cp~C~~ak~~L~   38 (114)
T 3h8q_A           18 RVVIFSKSYCPHSTRVKELFS   38 (114)
T ss_dssp             SEEEEECTTCHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHH
Confidence            467799999999998777664

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=83.00  E-value=0.96  Score=30.13  Aligned_cols=21  Identities=10%  Similarity=0.053  Sum_probs=16.8

Q ss_pred             EEEEec-----ccCchhhhhHHHHHH
Q 027910           16 IDVSSD-----TVCPWCFVGKRNLDK   36 (217)
Q Consensus        16 i~~y~D-----~~CP~cy~~~~~l~~   36 (217)
                      |.+|+-     +.||+|..+.+.|.+
T Consensus        19 vvvf~~g~~~~~~C~~C~~~~~~L~~   44 (105)
T 2yan_A           19 VMLFMKGNKQEAKCGFSKQILEILNS   44 (105)
T ss_dssp             EEEEESBCSSSBCTTHHHHHHHHHHH
T ss_pred             EEEEEecCCCCCCCccHHHHHHHHHH
Confidence            556887     999999988877754

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=82.68  E-value=0.79  Score=30.85  Aligned_cols=21  Identities=10%  Similarity=0.048  Sum_probs=17.0

Q ss_pred             EEEEEec-----ccCchhhhhHHHHH
Q 027910           15 RIDVSSD-----TVCPWCFVGKRNLD   35 (217)
Q Consensus        15 ~i~~y~D-----~~CP~cy~~~~~l~   35 (217)
                      +|.+|+-     +.||||..+...|.
T Consensus        16 ~vvvy~~g~~~~~~Cp~C~~ak~~L~   41 (109)
T 1wik_A           16 SVMLFMKGNKQEAKCGFSKQILEILN   41 (109)
T ss_dssp             SEEEEESSTTTCCCSSTHHHHHHHHH
T ss_pred             CEEEEEecCCCCCCCchHHHHHHHHH
Confidence            3677888     99999998777664

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=82.66  E-value=0.85  Score=30.75  Aligned_cols=22  Identities=23%  Similarity=0.442  Sum_probs=17.9

Q ss_pred             EEEEEecccCchhhhhHHHHHH
Q 027910           15 RIDVSSDTVCPWCFVGKRNLDK   36 (217)
Q Consensus        15 ~i~~y~D~~CP~cy~~~~~l~~   36 (217)
                      .|.+|+-+.||+|..+.+.|.+
T Consensus        20 ~v~vy~~~~Cp~C~~~~~~L~~   41 (113)
T 3rhb_A           20 TVVIYSKTWCSYCTEVKTLFKR   41 (113)
T ss_dssp             SEEEEECTTCHHHHHHHHHHHH
T ss_pred             CEEEEECCCChhHHHHHHHHHH
Confidence            3788999999999987776653

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=82.11  E-value=2.8  Score=31.67  Aligned_cols=38  Identities=16%  Similarity=0.053  Sum_probs=30.4

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEE
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRW   51 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~   51 (217)
                      ..++.|..|+.+-||+|....+.+.++.++|+   ++.+..
T Consensus       135 ~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~~---~v~~~~  172 (229)
T 2ywm_A          135 DIPIEIWVFVTTSCGYCPSAAVMAWDFALAND---YITSKV  172 (229)
T ss_dssp             CSCEEEEEEECTTCTTHHHHHHHHHHHHHHCT---TEEEEE
T ss_pred             CCCeEEEEEECCCCcchHHHHHHHHHHHHHCC---CeEEEE
Confidence            45777888999999999999999999888763   355543

>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}

Probab=82.10  E-value=0.49  Score=32.82  Aligned_cols=34  Identities=6%  Similarity=0.083  Sum_probs=25.8

Q ss_pred             eEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecc
Q 027910           14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF   55 (217)
Q Consensus        14 v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~   55 (217)
                      |.|.+|+-+.||+|..+...|++        .++.++++.+.
T Consensus         4 M~i~iY~~p~C~~c~ka~~~L~~--------~gi~~~~~di~   37 (119)
T 3f0i_A            4 MSVVIYHNPKCSKSRETLALLEN--------QGIAPQVIKYL   37 (119)
T ss_dssp             TCCEEECCTTCHHHHHHHHHHHH--------TTCCCEEECHH
T ss_pred             cEEEEEECCCChHHHHHHHHHHH--------cCCceEEEEec
Confidence            35889999999999998876652        35777766664

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=82.04  E-value=3.3  Score=29.09  Aligned_cols=28  Identities=11%  Similarity=-0.058  Sum_probs=17.7

Q ss_pred             EEEecccCchhhhhHHHHHHHHHhcCCCC
Q 027910           17 DVSSDTVCPWCFVGKRNLDKAIASSKDQY   45 (217)
Q Consensus        17 ~~y~D~~CP~cy~~~~~l~~~~~~~~~~~   45 (217)
                      .++.+|.-|||-.-...... ++++..++
T Consensus        25 ~vlv~F~a~wC~~C~~~~p~-l~~l~~~~   52 (142)
T 1qgv_A           25 VVVIRFGHDWDPTCMKMDEV-LYSIAEKV   52 (142)
T ss_dssp             EEEEEEECTTSHHHHHHHHH-HHHHHHHH
T ss_pred             EEEEEEECCCCHHHHHHHHH-HHHHHHHh
Confidence            46778888888877765544 44444334

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=81.99  E-value=0.82  Score=30.17  Aligned_cols=22  Identities=23%  Similarity=0.537  Sum_probs=18.1

Q ss_pred             EEEEEecccCchhhhhHHHHHH
Q 027910           15 RIDVSSDTVCPWCFVGKRNLDK   36 (217)
Q Consensus        15 ~i~~y~D~~CP~cy~~~~~l~~   36 (217)
                      .|.+|+-+.||+|..+.+.|.+
T Consensus        13 ~v~~f~~~~C~~C~~~~~~L~~   34 (105)
T 1kte_A           13 KVVVFIKPTCPFCRKTQELLSQ   34 (105)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCHhHHHHHHHHHH
Confidence            4777999999999988877654

>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}

Probab=81.93  E-value=1.7  Score=30.07  Aligned_cols=54  Identities=30%  Similarity=0.297  Sum_probs=30.6

Q ss_pred             HHHHHHHHcCCC-cccc-cccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHH
Q 027910          147 FLVECARKVGVE-GAAE-FLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEV  207 (217)
Q Consensus       147 ~L~~ia~~~Gld-~~~~-~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~  207 (217)
                      ...++....|+. -..+ ..++++++    +.....  .|-.-+|-++|||+ .|.|.+....
T Consensus        40 ~ak~lL~~~gv~~~~~~~v~~~~~~r----~~l~~~--sg~~TvPqIFI~g~-~IGG~Ddl~~   95 (118)
T 2wul_A           40 AVVQILRLHGVRDYAAYNVLDDPELR----QGIKDY--SNWPTIPQVYLNGE-FVGGCDILLQ   95 (118)
T ss_dssp             HHHHHHHHTTCCSCEEEETTSCHHHH----HHHHHH--HTCCSSCEEEETTE-EEECHHHHHH
T ss_pred             HHHHHHHHhCCcCeEeecccCCHHHH----HHHHHh--ccCCCCCeEeECCE-EECCHHHHHH
Confidence            344566667763 3333 33444433    333322  24567999999999 5777754433

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=81.60  E-value=1  Score=31.01  Aligned_cols=38  Identities=21%  Similarity=0.184  Sum_probs=28.7

Q ss_pred             cceEEEEEecccCchhhhhHHHHH--HHHHhcCCCCceeEEE
Q 027910           12 KLIRIDVSSDTVCPWCFVGKRNLD--KAIASSKDQYDFEIRW   51 (217)
Q Consensus        12 ~~v~i~~y~D~~CP~cy~~~~~l~--~~~~~~~~~~~v~v~~   51 (217)
                      .+..|.+|+..-||+|....+.+.  ++.+.+.+  ++.+..
T Consensus        29 ~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~--~~~~~~   68 (133)
T 3fk8_A           29 HKPTLLVFGANWCTDCRALDKSLRNQKNTALIAK--HFEVVK   68 (133)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHH--HCEEEE
T ss_pred             CCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcC--CEEEEE
Confidence            466788888899999999999998  87776642  344443

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=81.51  E-value=2.6  Score=30.45  Aligned_cols=40  Identities=10%  Similarity=0.039  Sum_probs=28.9

Q ss_pred             HHHHHHhCCCCeecEEEE---C-Ce--eeecCCCCHHHHHHHHHHHh
Q 027910          176 EELKKYSANISGVPHFVL---N-GK--HELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       176 ~~~~a~~~gv~g~Pt~vv---~-g~--~~~~G~~~~~~l~~~i~~~~  216 (217)
                      +.+.+...++.|+|+++|   + |+  ..+.| .+.+.|.+.|+++.
T Consensus        90 ~~~l~~~y~v~~~P~~~fld~~~G~~l~~~~g-~~~~~fl~~L~~~l  135 (153)
T 2dlx_A           90 GQRYIQFYKLGDFPYVSILDPRTGQKLVEWHQ-LDVSSFLDQVTGFL  135 (153)
T ss_dssp             HHHHHHHHTCCSSSEEEEECTTTCCCCEEESS-CCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCEEEEEeCCCCcEeeecCC-CCHHHHHHHHHHHH
Confidence            344567889999999977   3 53  12445 79999999888653

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=81.13  E-value=1.2  Score=31.07  Aligned_cols=22  Identities=23%  Similarity=0.542  Sum_probs=18.1

Q ss_pred             EEEEEecccCchhhhhHHHHHH
Q 027910           15 RIDVSSDTVCPWCFVGKRNLDK   36 (217)
Q Consensus        15 ~i~~y~D~~CP~cy~~~~~l~~   36 (217)
                      .|.+|+.+.||+|..+.+.|.+
T Consensus        28 ~vvvf~~~~Cp~C~~~~~~L~~   49 (130)
T 2cq9_A           28 CVVIFSKTSCSYCTMAKKLFHD   49 (130)
T ss_dssp             SEEEEECSSCSHHHHHHHHHHH
T ss_pred             cEEEEEcCCChHHHHHHHHHHH
Confidence            4666999999999998887764

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=80.85  E-value=1.7  Score=30.85  Aligned_cols=41  Identities=5%  Similarity=-0.155  Sum_probs=29.8

Q ss_pred             CcceEEEEEec-ccCchhhhhHHHHHHHHHhcCCCCceeEEEe
Q 027910           11 KKLIRIDVSSD-TVCPWCFVGKRNLDKAIASSKDQYDFEIRWH   52 (217)
Q Consensus        11 ~~~v~i~~y~D-~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~   52 (217)
                      ..+..|.+|+- .-||.|-...+.|.++.++|++ .++.|...
T Consensus        34 ~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~-~~~~vv~v   75 (163)
T 3gkn_A           34 AGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDK-AGAKILGV   75 (163)
T ss_dssp             TTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHH-TTCEEEEE
T ss_pred             CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHH-CCCEEEEE
Confidence            33455555554 8899999999999999988863 35666543

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=80.84  E-value=2.1  Score=30.29  Aligned_cols=37  Identities=11%  Similarity=-0.110  Sum_probs=28.2

Q ss_pred             eEEEEEe-cccCchhhhhHHHHHHHHHhcCCCCceeEEE
Q 027910           14 IRIDVSS-DTVCPWCFVGKRNLDKAIASSKDQYDFEIRW   51 (217)
Q Consensus        14 v~i~~y~-D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~   51 (217)
                      ..|.+|+ ..-||.|-...+.|.++.++|.+ .++.+..
T Consensus        38 ~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~-~~~~vv~   75 (160)
T 1xvw_A           38 NVLLVFFPLAFTGICQGELDQLRDHLPEFEN-DDSAALA   75 (160)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHHHHTGGGTSS-SSEEEEE
T ss_pred             CEEEEEECCCCCCchHHHHHHHHHHHHHHHH-CCcEEEE
Confidence            5666665 89999999999999988888763 3565544

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}

Probab=80.52  E-value=2.5  Score=29.45  Aligned_cols=23  Identities=22%  Similarity=0.430  Sum_probs=17.6

Q ss_pred             CCCCeecEEEECCeeeecCCCCHH
Q 027910          183 ANISGVPHFVLNGKHELSGGQPPE  206 (217)
Q Consensus       183 ~gv~g~Pt~vv~g~~~~~G~~~~~  206 (217)
                      .|...+|.++|||+ .|.|.+...
T Consensus        66 ~G~~tVP~IfI~G~-~IGG~ddl~   88 (127)
T 3l4n_A           66 TGRGTVPNLLVNGV-SRGGNEEIK   88 (127)
T ss_dssp             HSCCSSCEEEETTE-ECCCHHHHH
T ss_pred             cCCCCcceEEECCE-EEcCHHHHH
Confidence            47889999999998 566765443

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=80.21  E-value=1.7  Score=36.02  Aligned_cols=39  Identities=5%  Similarity=0.043  Sum_probs=31.1

Q ss_pred             HHHHHhCCCCeecEEEE--CCee-eecCCCCHHHHHHHHHHH
Q 027910          177 ELKKYSANISGVPHFVL--NGKH-ELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       177 ~~~a~~~gv~g~Pt~vv--~g~~-~~~G~~~~~~l~~~i~~~  215 (217)
                      ...+.+.||.|+||+++  +|+. .+.|..+.+.+.+.|.+.
T Consensus        81 ~~l~~~~~V~~~PTl~~f~~G~~~~y~G~~~~~~i~~~i~~~  122 (367)
T 3us3_A           81 AAVAKKLGLTEEDSIYVFKEDEVIEYDGEFSADTLVEFLLDV  122 (367)
T ss_dssp             HHHHHHHTCCSTTEEEEEETTEEEECCSCCSHHHHHHHHHHH
T ss_pred             HHHHHHcCCCcCceEEEEECCcEEEeCCCCCHHHHHHHHHHh
Confidence            35678899999999977  6763 357999999999988754

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=80.14  E-value=0.93  Score=30.95  Aligned_cols=36  Identities=11%  Similarity=0.189  Sum_probs=23.5

Q ss_pred             HHHhCCCCeecEEEEC-CeeeecCCC--CHHHHHHHHHH
Q 027910          179 KKYSANISGVPHFVLN-GKHELSGGQ--PPEVYLRAFQV  214 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv~-g~~~~~G~~--~~~~l~~~i~~  214 (217)
                      .+.+.||.|+||+++- +...+.|..  ..+.+.+.|++
T Consensus        84 ~~~~~~i~~~Pt~~~~~~~~~~~g~~~~~~~~l~~~i~~  122 (123)
T 1wou_A           84 FRKNLKVTAVPTLLKYGTPQKLVESECLQANLVEMLFSE  122 (123)
T ss_dssp             HHHHHCCCSSSEEEETTSSCEEEGGGGGCHHHHHHHHHC
T ss_pred             HHHHCCCCeeCEEEEEcCCceEeccccCCHHHHHHHHhc
Confidence            4456899999999883 222444433  46777777754

>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}

Probab=80.10  E-value=1.2  Score=30.90  Aligned_cols=32  Identities=6%  Similarity=0.071  Sum_probs=24.8

Q ss_pred             EEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecc
Q 027910           16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF   55 (217)
Q Consensus        16 i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~   55 (217)
                      |.+|+-+.||+|..+...|+        +.++.++++.+.
T Consensus         7 i~iY~~p~C~~c~ka~~~L~--------~~gi~~~~~di~   38 (121)
T 3rdw_A            7 VTIYHNPRCSKSRETLALVE--------QQGITPQVVLYL   38 (121)
T ss_dssp             CEEECCTTCHHHHHHHHHHH--------TTTCCCEEECTT
T ss_pred             EEEEECCCCHHHHHHHHHHH--------HcCCCcEEEeec
Confidence            78899999999999877664        346777777665

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=80.10  E-value=1.2  Score=31.87  Aligned_cols=22  Identities=23%  Similarity=0.542  Sum_probs=18.3

Q ss_pred             EEEEEecccCchhhhhHHHHHH
Q 027910           15 RIDVSSDTVCPWCFVGKRNLDK   36 (217)
Q Consensus        15 ~i~~y~D~~CP~cy~~~~~l~~   36 (217)
                      .|.+|+.+.||+|..+.+.|.+
T Consensus        50 ~Vvvf~~~~Cp~C~~~k~~L~~   71 (146)
T 2ht9_A           50 CVVIFSKTSCSYCTMAKKLFHD   71 (146)
T ss_dssp             SEEEEECTTCHHHHHHHHHHHH
T ss_pred             CEEEEECCCChhHHHHHHHHHH
Confidence            4667999999999998887764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	217
d1r4wa_	221	c.47.1.13 (A:) Mitochondrial class kappa glutathio	2e-21

>d1r4wa_ c.47.1.13 (A:) Mitochondrial class kappa glutathione S-transferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 221

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Mitochondrial class kappa glutathione S-transferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 86.6 bits (213), Expect = 2e-21
 Identities = 28/197 (14%), Positives = 70/197 (35%), Gaps = 13/197 (6%)

Query: 16  IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKF 75
           +++  D + P+ ++G   L +        ++ +++  P  L       G        +K 
Sbjct: 7   LELFYDVLSPYSWLGFEVLCRYQH----LWNIKLKLRPALLAGIMKDSGNQPPAMVPHKG 62

Query: 76  GSQNQGIIARMTEVFRGLGLEYNMSGLTG--NTLDSHRLLYLAGQQGLDKQHNLAEELFL 133
               + I          + +  +  G      T+++ R L     +  +    ++ EL++
Sbjct: 63  QYILKEIPLLKQLFQVPMSVPKDFFGEHVKKGTVNAMRFLTAVSMEQPEMLEKVSRELWM 122

Query: 134 GYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKK-----YSANISGV 188
             +++ + I + + ++  A K G+  A             V  +L++           G+
Sbjct: 123 RIWSRDEDITESQNILSAAEKAGMATAQAQHLLNKISTELVKSKLRETTGAACKYGAFGL 182

Query: 189 PHFVLN--GKHELSGGQ 203
           P  V +  GK  +  G 
Sbjct: 183 PTTVAHVDGKTYMLFGS 199

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	217
d1r4wa_	221	Mitochondrial class kappa glutathione S-transferas	100.0
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	99.94
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	99.87
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	99.85
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	99.78
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	99.78
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	99.77
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	99.27
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	99.0
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	98.0
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	97.94
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	97.88
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	97.77
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	97.45
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	97.41
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	97.31
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	97.27
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	97.19
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	97.0
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	96.99
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	96.82
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	96.6
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	96.48
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	96.42
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	96.35
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	96.18
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	96.11
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	96.11
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	95.95
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	95.87
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	95.84
d1wjka_	100	Thioredoxin-like structure containing protein C330	95.82
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	95.76
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	95.75
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	95.39
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	95.37
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	95.37
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	95.19
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	95.03
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	94.98
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	94.79
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	94.67
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	94.51
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	94.24
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	94.15
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	93.98
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	93.92
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	93.63
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	93.51
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	93.31
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	92.71
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	92.67
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	92.41
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	92.34
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	92.06
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	91.97
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	91.58
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	90.67
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	90.53
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	90.43
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	90.3
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	89.88
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	89.42
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	88.43
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	88.25
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	88.13
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	87.85
d1wjka_	100	Thioredoxin-like structure containing protein C330	87.78
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	86.88
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	86.7
d1eema2	98	Class omega GST {Human (Homo sapiens) [TaxId: 9606	86.54
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	86.24
d1z9ha2	113	Microsomal prostaglandin E synthase-2 {Crab-eating	85.75
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	85.51
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	85.04
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	84.79
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	84.79
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	84.74
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	84.63
d1t1va_	93	SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}	84.46
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	84.46
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	84.41
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	83.73
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	83.25
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	82.74
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	82.12
d1abaa_	87	Glutaredoxin (Grx, thioltransferase) {Bacteriophag	81.86
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	80.76
d1k0da2	92	Yeast prion protein ure2p, nitrogen regulation fra	80.66
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	80.34
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	80.24
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	80.08
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	80.06

>d1r4wa_ c.47.1.13 (A:) Mitochondrial class kappa glutathione S-transferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Mitochondrial class kappa glutathione S-transferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.6e-34  Score=224.47  Aligned_cols=195  Identities=13%  Similarity=0.171  Sum_probs=154.9

Q ss_pred             ceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHHHHHHHh
Q 027910           13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRG   92 (217)
Q Consensus        13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~   92 (217)
                      +.+|++|+|+.|||||++..+|+++.+    +++++|+||||.|++..+..|........    .+..+...+..+.+..
T Consensus         4 ~k~I~~y~D~~sP~~Yl~~~~l~~l~~----~~~v~i~~rP~~L~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~   75 (221)
T d1r4wa_           4 PRVLELFYDVLSPYSWLGFEVLCRYQH----LWNIKLKLRPALLAGIMKDSGNQPPAMVP----HKGQYILKEIPLLKQL   75 (221)
T ss_dssp             CEEEEEEECTTCHHHHHHHHHHHHHTT----TSSEEEEEEECCHHHHHHHTTCCCTTSSH----HHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCHHHHHHHHHHHHHHH----HcCCEEEEEEEeccccchhccccchhhhh----hhhhhhHHHHHHHHHh
Confidence            348999999999999999999998765    56899999999987654333322111111    1345677778888888


Q ss_pred             cCCccccCCC------CCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc----
Q 027910           93 LGLEYNMSGL------TGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE----  162 (217)
Q Consensus        93 ~g~~~~~~~~------~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~----  162 (217)
                      .++++..+..      +.++..++++..++..++.++..+|.+++|+++|.+|.||++.++|.+++.++|++.+.+    
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~g~di~d~~~l~~~a~~~gl~~~~~~~~~  155 (221)
T d1r4wa_          76 FQVPMSVPKDFFGEHVKKGTVNAMRFLTAVSMEQPEMLEKVSRELWMRIWSRDEDITESQNILSAAEKAGMATAQAQHLL  155 (221)
T ss_dssp             HTCCCCCCSSTTTHHHHHCSHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHTSCCCCSSHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             hhhhhccccccccccccccchhHHHHHHHHHHhccchHHHHHHHHHHHHhccCCcccchHHHHHHHHHhCcccccccccc
Confidence            8988876532      245555666666655556666999999999999999999999999999999999998876    


Q ss_pred             -cccCcccchhHHHHHHHHHhCCCCeecEEEECC--e-eeecCCCCHHHHHHHHHHH
Q 027910          163 -FLDDPNSGLNEVHEELKKYSANISGVPHFVLNG--K-HELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       163 -~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g--~-~~~~G~~~~~~l~~~i~~~  215 (217)
                       .++++++++.+.+++++|.+.||+||||||||+  + ..+.|.+..+.++..|.+.
T Consensus       156 ~~~~~~~~k~~l~~~~~~A~~~GvfGvPtfvi~~~~~~e~f~G~Drl~~l~~~L~~~  212 (221)
T d1r4wa_         156 NKISTELVKSKLRETTGAACKYGAFGLPTTVAHVDGKTYMLFGSDRMELLAYLLGEK  212 (221)
T ss_dssp             TTTTSHHHHHHHHHHHHHHHHTTCCSSCEEEEEETTEEEEEESTTCHHHHHHHHTCC
T ss_pred             ccccCHHHHHHHHHHHHHHHHCCCeECCEEEEccCCCcceeecccCHHHHHHHHhcc
Confidence             356788999999999999999999999999974  2 3679999999999988653

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=99.94  E-value=6.2e-26  Score=171.99  Aligned_cols=163  Identities=10%  Similarity=0.039  Sum_probs=135.5

Q ss_pred             CcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHH
Q 027910            6 SSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIAR   85 (217)
Q Consensus         6 ~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   85 (217)
                      ..++...+++|++|+||.||||+.+++.+.+++++++.  ++.+.++++++....                         
T Consensus        12 ~~~p~~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~-------------------------   64 (181)
T d1beda_          12 LKTPASSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPE--GAKFQKNHVSFMGGN-------------------------   64 (181)
T ss_dssp             CSSCCCSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCT--TCEEEEEECSSSSGG-------------------------
T ss_pred             CCCCCCCCCEEEEEECCCCccchhhhhhhhhHhhhccc--ccceeEEeccccccc-------------------------
Confidence            44555678899999999999999999999999998875  567777777653210                         


Q ss_pred             HHHHHHhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc--c
Q 027910           86 MTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE--F  163 (217)
Q Consensus        86 ~~~~a~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~--~  163 (217)
                                         .+..+.+++.++...+.  ...+...++..++..+.+..+.+.|..++...|+|.+.+  +
T Consensus        65 -------------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gvd~~~~~~~  123 (181)
T d1beda_          65 -------------------MGQAMSKAYATMIALEV--EDKMVPVMFNRIHTLRKPPKDEQELRQIFLDEGIDAAKFDAA  123 (181)
T ss_dssp             -------------------GHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSCCCCCSHHHHHHHHHTTTCCHHHHHHH
T ss_pred             -------------------cHHHHHHHHHHHHHhcc--hhhHHHHHHHHHHHhccccchHHHHHHHHHHhcCCHHHHHHH
Confidence                               01122334444455566  899999999999999999999999999999999999999  8


Q ss_pred             ccCcccchhHHHHHHHHHhCCCCeecEEEECCeeee--cCCCCHHHHHHHHHHHh
Q 027910          164 LDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHEL--SGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       164 l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~--~G~~~~~~l~~~i~~~~  216 (217)
                      ++++++++.+.++.+.+...||+|||||+|||+|.+  .|..+++.|.++|+.+.
T Consensus       124 ~~~~~~~~~v~~~~~~~~~~gi~gTPt~~InGk~~v~~~~~~~~~~l~~~i~~L~  178 (181)
T d1beda_         124 YNGFAVDSMVRRFDKQFQDSGLTGVPAVVVNNRYLVQGQSVKSLDEYFDLVNYLL  178 (181)
T ss_dssp             HTSHHHHHHHHHHHHHHHHHTCCSSSEEEETTTEEECGGGCCSHHHHHHHHHHHH
T ss_pred             HhChHHHHHHHHHHHHHHHhCCccccEEEECCEEeeCCCCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999876  67889999999998764

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=9.7e-22  Score=149.65  Aligned_cols=147  Identities=16%  Similarity=0.142  Sum_probs=110.5

Q ss_pred             cccCCcceEEEEEecccCchhhhhHHHHHHHHHhcC-CCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHH
Q 027910            7 SSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSK-DQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIAR   85 (217)
Q Consensus         7 ~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~-~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   85 (217)
                      ++|...+++|++|+|+.||||+.+++.|..+.+... ....+.++++|+.+...         +.               
T Consensus        13 ~~p~~~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~---------------   68 (188)
T d1fvka_          13 EKPVAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFMGG---------DL---------------   68 (188)
T ss_dssp             SSCCTTCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEECSSSSH---------HH---------------
T ss_pred             CCCCCCCCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEecCcCCC---------hh---------------
Confidence            445556778999999999999999987754443111 12357777777664220         10               


Q ss_pred             HHHHHHhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc--c
Q 027910           86 MTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE--F  163 (217)
Q Consensus        86 ~~~~a~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~--~  163 (217)
                                          +..+..++..++..+.  ...+...++...+..+ +..+.+.+..++...|+|.+.|  +
T Consensus        69 --------------------~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~d~~~~~~~  125 (188)
T d1fvka_          69 --------------------GKDLTQAWAVAMALGV--EDKVTVPLFEGVQKTQ-TIRSASDIRDVFINAGIKGEEYDAA  125 (188)
T ss_dssp             --------------------HHHHHHHHHHHHHHTC--HHHHHHHHHHHHHTSC-CCCSHHHHHHHHHHTTCCHHHHHHH
T ss_pred             --------------------HHHHHHHHHHHHHHhh--hhhHHHHHHHHhhhhc-ccchHHHHHHHHHHccCCHHHHHhh
Confidence                                1112334444556677  7888888888766444 5667899999999999999999  8


Q ss_pred             ccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeec
Q 027910          164 LDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELS  200 (217)
Q Consensus       164 l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~  200 (217)
                      ++++++++.+..+.+.+.+.||+|||||+|||+|.+.
T Consensus       126 ~~~~~~~~~v~~~~~~a~~~gI~gTPt~vInGky~i~  162 (188)
T d1fvka_         126 WNSFVVKSLVAQQEKAAADVQLRGVPAMFVNGKYQLN  162 (188)
T ss_dssp             HHCHHHHHHHHHHHHHHHHTTCCSSSEEEETTTEEEC
T ss_pred             hccHHHHHHHHHHHHHHHHcCCccccEEEECCEEEec
Confidence            9999999999999999999999999999999998874

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.85  E-value=2.9e-21  Score=144.93  Aligned_cols=156  Identities=12%  Similarity=0.034  Sum_probs=109.6

Q ss_pred             cCcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHH
Q 027910            5 VSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIA   84 (217)
Q Consensus         5 ~~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~   84 (217)
                      +.-|++.++++|++|+||.||||+.+++.+.+++++|+....+.++++|+.+++...                       
T Consensus        17 ~~~G~~~a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------   73 (172)
T d1z6ma1          17 LHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFDKEKESL-----------------------   73 (172)
T ss_dssp             EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECCCCSTTT-----------------------
T ss_pred             CeecCCCCCEEEEEEECCCCHhHHHHHHHHhhhhhhhccccceeeeeccccccchhh-----------------------
Confidence            345788899999999999999999999999999998887677888888876543210                       


Q ss_pred             HHHHHHHhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccccc
Q 027910           85 RMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFL  164 (217)
Q Consensus        85 ~~~~~a~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~~l  164 (217)
                                            ..+..+..++...+.+....+++.++...-..+  -.+   +.+++..++++.   ++
T Consensus        74 ----------------------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~---~~  123 (172)
T d1z6ma1          74 ----------------------QRGNVMHHYIDYSAPEQALSALHKMFATQDEWG--NLT---LEEVATYAEKNL---GL  123 (172)
T ss_dssp             ----------------------HHHHHHHTTCCTTCHHHHHHHHHHHHHTHHHHT--TSC---HHHHHHHHHHTS---CC
T ss_pred             ----------------------HHHHHHHHHHHHccchhHHHHHHHHHHhccccc--hHH---HHHHHHHHHhhh---hh
Confidence                                  001111111122233446666776666432212  112   233333333321   45


Q ss_pred             cCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHHH
Q 027910          165 DDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQV  214 (217)
Q Consensus       165 ~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~~  214 (217)
                      +++.+...+..+.+.+.+.||+|||||+|||+ .+.|..+.++|.++|++
T Consensus       124 ~~~~~~~~i~~~~~~a~~~gI~gTPt~~Ing~-~~~g~~~~~~~~~~id~  172 (172)
T d1z6ma1         124 KEQKDATLVSAVIAEANAAHIQFVPTIIIGEY-IFDESVTEEELRGYIEK  172 (172)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTCCSSCEEEETTE-EECTTCCHHHHHHHHTC
T ss_pred             hhHHHHHHHHHHHHHHHHcCCCcCCEEEECCE-EecCCCCHHHHHHHHcC
Confidence            67778889999999999999999999999999 68999999999999874

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.78  E-value=1.3e-18  Score=128.10  Aligned_cols=129  Identities=16%  Similarity=0.177  Sum_probs=88.2

Q ss_pred             cccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHH
Q 027910            7 SSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARM   86 (217)
Q Consensus         7 ~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   86 (217)
                      -|+++++++|++|+||.||||..+++.+.++++.     +++++++++++....+       ..                
T Consensus        21 ~g~~~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~-----~~~v~~~~~~~~~~~~-------~~----------------   72 (150)
T d1t3ba1          21 YPAKNEKHVVTVFMDITCHYCHLLHQQLKEYNDL-----GITVRYLAFPRAGMNN-------QT----------------   72 (150)
T ss_dssp             ECCTTCSEEEEEEECTTCHHHHHHHTTHHHHHHT-----TEEEEEEECCSSTTCS-------HH----------------
T ss_pred             ECCCCCCEEEEEEECCCCHHHHHHhHHHHHHhcc-----CceEEEEEecccccch-------hH----------------
Confidence            3788899999999999999999999999998863     4667777666533211       00                


Q ss_pred             HHHHHhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccccccC
Q 027910           87 TEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDD  166 (217)
Q Consensus        87 ~~~a~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~~l~~  166 (217)
                                            +..+..+....+.  ...+. ..                     ...+      ...+
T Consensus        73 ----------------------~~~~~~~~~~~d~--~~a~~-~~---------------------~~~~------~~~~  100 (150)
T d1t3ba1          73 ----------------------AKQMEAIWTAKDP--VFALN-EA---------------------EKGN------LPKE  100 (150)
T ss_dssp             ----------------------HHHHHHHHHSSSH--HHHHH-HH---------------------HTTC------CCSS
T ss_pred             ----------------------HHHHHHHHHhhhH--HHhhH-hH---------------------hhhc------cccc
Confidence                                  0001111111111  11111 10                     0000      2445


Q ss_pred             cccchhHHHHHHHHHhCCCCeecEEEE-CCeeeecCCCCHHHHHHHHHHHh
Q 027910          167 PNSGLNEVHEELKKYSANISGVPHFVL-NGKHELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       167 ~~~~~~~~~~~~~a~~~gv~g~Pt~vv-~g~~~~~G~~~~~~l~~~i~~~~  216 (217)
                      ....+.++++.+.++.+||.||||||+ ||+ .+.|+.+.+.|+++|++++
T Consensus       101 ~~~~~~i~~~~~la~~lGv~GTPt~~~~nG~-~i~G~~~~~~l~~~l~~~a  150 (150)
T d1t3ba1         101 VKTPNIVKKHYELGIQFGVRGTPSIVTSTGE-LIGGYLKPADLLRALEETA  150 (150)
T ss_dssp             CCCSSHHHHHHHHHHHHTCCSSCEEECTTSC-CCCSCCCHHHHHHHHHHCC
T ss_pred             hhhhhHHHHHHHHHHhcCcCCCCEEEEcCCc-EecCCCCHHHHHHHHHhhC
Confidence            566778999999999999999999888 677 7899999999999999764

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=1.2e-18  Score=128.95  Aligned_cols=129  Identities=18%  Similarity=0.227  Sum_probs=89.4

Q ss_pred             cccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHH
Q 027910            7 SSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARM   86 (217)
Q Consensus         7 ~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   86 (217)
                      -|++..+++|++|+||.||||..+++.+.++.+.     +++++|+.+++.+..+       .                 
T Consensus        21 ~g~~~ak~tIv~FsD~~CpyC~~~~~~l~~~~~~-----~~~~~~~~~p~~~~~~-------~-----------------   71 (156)
T d1eeja1          21 YKAPQEKHVITVFTDITCGYCHKLHEQMADYNAL-----GITVRYLAFPRQGLDS-------D-----------------   71 (156)
T ss_dssp             ECCTTCCEEEEEEECTTCHHHHHHHTTHHHHHHT-----TEEEEEEECCTTCSSS-------H-----------------
T ss_pred             ecCCCCCEEEEEEeCCCCHHHHHHHHHHHHhhcc-----CceEEEEeccccccch-------h-----------------
Confidence            3778899999999999999999999999988752     5788888887644221       0                 


Q ss_pred             HHHHHhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccccccC
Q 027910           87 TEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDD  166 (217)
Q Consensus        87 ~~~a~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~~l~~  166 (217)
                                         +   ...+.++...+. .... .+.+                      ..|.+     +.+
T Consensus        72 -------------------~---~~~a~~~~~~~~-~~~~-~~~~----------------------~~~~~-----~~~  100 (156)
T d1eeja1          72 -------------------A---EKEMKAIWCAKD-KNKA-FDDV----------------------MAGKS-----VAP  100 (156)
T ss_dssp             -------------------H---HHHHHHHHTSSS-HHHH-HHHH----------------------HTTCC-----CCC
T ss_pred             -------------------h---HHHHHHHHHhhh-hhhh-hHHH----------------------Hhccc-----cch
Confidence                               0   011111111111 1222 1111                      12332     333


Q ss_pred             cccchhHHHHHHHHHhCCCCeecEEEE-CCeeeecCCCCHHHHHHHHHHHh
Q 027910          167 PNSGLNEVHEELKKYSANISGVPHFVL-NGKHELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       167 ~~~~~~~~~~~~~a~~~gv~g~Pt~vv-~g~~~~~G~~~~~~l~~~i~~~~  216 (217)
                      ......+.++.+.+.++||.||||||+ ||+ .+.|+.+++.|.++|++..
T Consensus       101 ~~~~~~i~~~~~la~~lgv~GTPt~~~~nG~-~v~G~~~~e~l~~~i~~~~  150 (156)
T d1eeja1         101 ASCDVDIADHYALGVQLGVSGTPAVVLSNGT-LVPGYQPPKEMKEFLDEHQ  150 (156)
T ss_dssp             CCCSCCHHHHHHHHHHHTCCSSSEEECTTSC-EEESCCCHHHHHHHHHHHH
T ss_pred             hhhcchHHHHHHHHHHcCCcCCCEEEEeCCe-EecCCCCHHHHHHHHHHHH
Confidence            445567889999999999999999888 677 7899999999999999764

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=9.7e-19  Score=131.21  Aligned_cols=132  Identities=8%  Similarity=-0.034  Sum_probs=93.5

Q ss_pred             CcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHH
Q 027910            6 SSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIAR   85 (217)
Q Consensus         6 ~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   85 (217)
                      +-|+..++++|++|+||.||||...++.++++++    +..++++|+|+++..                           
T Consensus        30 ~~G~~~a~~tv~vF~D~~CP~C~~~~~~l~~l~~----~~~v~v~~~~~~~~~---------------------------   78 (169)
T d1v58a1          30 LDGKKDAPVIVYVFADPFCPYCKQFWQQARPWVD----SGKVQLRTLLVGVIK---------------------------   78 (169)
T ss_dssp             EESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHH----TTSEEEEEEECCCSS---------------------------
T ss_pred             eeCCCCCCEEEEEEECCCCcchHHHHHHHHHHHh----ccceeEEEEecccCC---------------------------
Confidence            4588999999999999999999999999999887    457999999997532                           


Q ss_pred             HHHHHHhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc--c
Q 027910           86 MTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE--F  163 (217)
Q Consensus        86 ~~~~a~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~--~  163 (217)
                                        ++|..+++++.++.+++.  .+                        +.....|.+....  .
T Consensus        79 ------------------~~s~~~a~a~~~a~~~~~--~~------------------------~~~~~~~~~~~~~~~~  114 (169)
T d1v58a1          79 ------------------PESPATAAAILASKDPAK--TW------------------------QQYEASGGKLKLNVPA  114 (169)
T ss_dssp             ------------------TTHHHHHHHHHHSSSHHH--HH------------------------HHHHHTTTCCCCCCCS
T ss_pred             ------------------cchHHHHHHHHhhhCHHH--HH------------------------HHHHHhhhcccccccc
Confidence                              112223344444322111  22                        2223344433333  3


Q ss_pred             ccCcccchhHHHHHHHHHhCCCCeecEEEEC---Ce-eeecCCCCHHHHHHHH
Q 027910          164 LDDPNSGLNEVHEELKKYSANISGVPHFVLN---GK-HELSGGQPPEVYLRAF  212 (217)
Q Consensus       164 l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~---g~-~~~~G~~~~~~l~~~i  212 (217)
                      ..+++..+.+.++.+.+..+||.|||||||+   |+ ..+.|+.+++.|+++|
T Consensus       115 ~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g~~~~~~G~~~~~~l~~il  167 (169)
T d1v58a1         115 NVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQQAVGLPDQKTLNIIM  167 (169)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEEEEEESSCCHHHHHHHT
T ss_pred             hhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHh
Confidence            4455667789999999999999999999994   33 2579999999988876

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=3.1e-12  Score=97.23  Aligned_cols=61  Identities=18%  Similarity=0.227  Sum_probs=58.0

Q ss_pred             CCCCCHHHHHHHHHHcCCCcccc--cccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeec
Q 027910          140 KYIGDKEFLVECARKVGVEGAAE--FLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELS  200 (217)
Q Consensus       140 ~~i~~~~~L~~ia~~~Gld~~~~--~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~  200 (217)
                      +.|++.+.|.+++.+.|||.++|  +++|++++..++++.+.++++||+|||||+|||+|.+.
T Consensus         1 q~i~s~~~i~~~~~~~Gld~~~f~~~~~s~~~~~~v~~~~~~a~~~gi~GtPtfiVnGky~v~   63 (195)
T d1un2a_           1 QTIRSASDIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKAAADVQLRGVPAMFVNGKYQLN   63 (195)
T ss_dssp             CCCSSHHHHHHHHHHHTCCHHHHHHHHTSHHHHHHHHHHHHHHHHTTCCSSSEEEETTTEEEC
T ss_pred             CCCCCHHHHHHHHHHcCCCHHHHHHHHcCHHHHHHHHHHHHHHHHhCCCcCCEEEECCeeeec
Confidence            46889999999999999999999  99999999999999999999999999999999999885

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=99.00  E-value=1.3e-10  Score=87.99  Aligned_cols=82  Identities=12%  Similarity=0.089  Sum_probs=62.3

Q ss_pred             cccCCcceEEEEEecccCchhhhhHHHHH---HHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHH
Q 027910            7 SSAGKKLIRIDVSSDTVCPWCFVGKRNLD---KAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGII   83 (217)
Q Consensus         7 ~~~~~~~v~i~~y~D~~CP~cy~~~~~l~---~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~   83 (217)
                      +++...+++|..||||.|||||.+++.|.   ++.+.+++  ++++++.|+++...                        
T Consensus       108 ~~p~~~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~--~v~~~~~~~~~~~~------------------------  161 (195)
T d1un2a_         108 EKPVAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPE--GVKMTKYHVNFMGG------------------------  161 (195)
T ss_dssp             SSCCTTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCT--TCCEEEEECSSSSH------------------------
T ss_pred             CCCCCCCceEEEEEecCCccccccchhhhHHHHHHhhcCC--CcEEEEEecCcCCC------------------------
Confidence            34444578899999999999999999764   55556654  67888888765320                        


Q ss_pred             HHHHHHHHhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHh
Q 027910           84 ARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYF  136 (217)
Q Consensus        84 ~~~~~~a~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~  136 (217)
                                          +.+..+.++..+|+.+|.  .++++++||.+++
T Consensus       162 --------------------~~~~~~A~a~~aA~~~g~--~~~~h~alF~aIh  192 (195)
T d1un2a_         162 --------------------DLGKDLTQAWAVAMALGV--EDKVTVPLFEGVQ  192 (195)
T ss_dssp             --------------------HHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHH
T ss_pred             --------------------cchHHHHHHHHHHHHcCC--HHHHHHHHHHHHH
Confidence                                113446788889999998  9999999999986

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.00  E-value=3.3e-05  Score=49.30  Aligned_cols=35  Identities=29%  Similarity=0.447  Sum_probs=29.6

Q ss_pred             HhCCCCeecEEEECCeeeecCCCCHHHHHHHHHHH
Q 027910          181 YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       181 ~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~~~  215 (217)
                      .+.||.|+||+++++...+.|..+.+.|.+.|++.
T Consensus        50 ~~~~V~~~Pt~~i~~~g~~~G~~~~~~l~~~i~~~   84 (85)
T d1fo5a_          50 MEYGIMAVPTIVINGDVEFIGAPTKEALVEAIKKR   84 (85)
T ss_dssp             TSTTTCCSSEEEETTEEECCSSSSSHHHHHHHHHH
T ss_pred             ccCCceEeeEEEEECCcEEECCCCHHHHHHHHHhc
Confidence            35689999999998766678999999999999864

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=97.94  E-value=4.2e-05  Score=53.74  Aligned_cols=41  Identities=7%  Similarity=0.034  Sum_probs=32.4

Q ss_pred             ccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910            8 SAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR   50 (217)
Q Consensus         8 ~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~   50 (217)
                      .....+++|.+|+..-||.|-...+.|.++.++|++  ++.+.
T Consensus        25 ~~~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~--~~~~i   65 (143)
T d2b5xa1          25 QLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQD--QLNVV   65 (143)
T ss_dssp             HHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TSEEE
T ss_pred             HHhCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhc--cccce
Confidence            334557888888899999999999999999998875  45554

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.88  E-value=5.3e-05  Score=50.40  Aligned_cols=38  Identities=29%  Similarity=0.535  Sum_probs=31.1

Q ss_pred             HHhCCCCeecEEEE--CCe--eeecCCCCHHHHHHHHHHHhC
Q 027910          180 KYSANISGVPHFVL--NGK--HELSGGQPPEVYLRAFQVAAN  217 (217)
Q Consensus       180 a~~~gv~g~Pt~vv--~g~--~~~~G~~~~~~l~~~i~~~~~  217 (217)
                      +.+.||.|+||+++  +|+  ..+.|..+.+.|.+.|.++.|
T Consensus        66 ~~~~~V~~vPTi~i~~~G~~~~~~~G~~~~~~~~~~i~~al~  107 (107)
T d1a8la2          66 ADQYNVMAVPKIVIQVNGEDRVEFEGAYPEKMFLEKLLSALS  107 (107)
T ss_dssp             HHHTTCCSSCEEEEEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             ccccccccceEEEEEeCCeEEEEEECCCCHHHHHHHHHHhhC
Confidence            44678999999988  465  346899999999999998865

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=97.77  E-value=0.00036  Score=48.25  Aligned_cols=45  Identities=18%  Similarity=-0.043  Sum_probs=34.3

Q ss_pred             cCcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910            5 VSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR   50 (217)
Q Consensus         5 ~~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~   50 (217)
                      ++.+.-..+.+|.+|+..-||+|....+.+.++.++|.+ .++.+.
T Consensus        18 ~~l~~~~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~v   62 (137)
T d1st9a_          18 IELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKS-QGVEIV   62 (137)
T ss_dssp             EEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG-GTEEEE
T ss_pred             EeHHHhCCCEEEEEEeeccccceeecccccccccccccc-cccccc
Confidence            344444556788889999999999999999999988864 345543

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.45  E-value=0.00017  Score=45.87  Aligned_cols=64  Identities=19%  Similarity=0.189  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHcCCCcccc-cccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHHHHh
Q 027910          145 KEFLVECARKVGVEGAAE-FLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       145 ~~~L~~ia~~~Gld~~~~-~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~~~~  216 (217)
                      ...+.+++.+.+-+. .+ .++.++.       .+.+.+.||.|+||++++|+....|..+.+.|.+.|++..
T Consensus        20 ~p~~~~l~~~~~~~v-~~~~vd~d~~-------~~l~~~~~V~~~Pt~~~~~~~~~~G~~~~~~l~~~i~~~l   84 (85)
T d1nhoa_          20 IEVVDEAKKEFGDKI-DVEKIDIMVD-------REKAIEYGLMAVPAIAINGVVRFVGAPSREELFEAINDEM   84 (85)
T ss_dssp             HHHHHHHHHHHCSSC-CEEEECTTTC-------GGGGGGTCSSCSSEEEETTTEEEECSSCCHHHHHHHHHHC
T ss_pred             HHHHhhhcccccccc-cccccccccc-------hhhHHhcCceEeCEEEECCcEEEEcCCCHHHHHHHHHHhh
Confidence            345666776654221 12 3443322       2347789999999999998877889999999999998764

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.41  E-value=4.9e-05  Score=49.88  Aligned_cols=36  Identities=22%  Similarity=0.238  Sum_probs=30.9

Q ss_pred             HHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHH
Q 027910          178 LKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQ  213 (217)
Q Consensus       178 ~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~  213 (217)
                      +.+.+.||.|+||+++||+....|..+.++|.+.|+
T Consensus        59 ~l~~~~~I~~vPt~~~ng~~~~~G~~~~~~l~~~le   94 (96)
T d1hyua4          59 NEITERNVMGVPAVFVNGKEFGQGRMTLTEIVAKVD   94 (96)
T ss_dssp             HHHHHTTCCSSSEEEETTEEEEESCCCHHHHHHHHC
T ss_pred             HHHhhcccccccEEEECCEEEEecCCCHHHHHHHHh
Confidence            445678999999999999977789999999998875

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.31  E-value=0.0014  Score=44.94  Aligned_cols=42  Identities=12%  Similarity=0.121  Sum_probs=31.1

Q ss_pred             cccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEE
Q 027910            7 SSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRW   51 (217)
Q Consensus         7 ~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~   51 (217)
                      .+.-..++.|.+|+-.-||+|-...+.|.++.++++   ++.+..
T Consensus        19 l~~~~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~---~v~~v~   60 (134)
T d1lu4a_          19 GASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP---AVTFVG   60 (134)
T ss_dssp             GGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEE
T ss_pred             HHHhCCCEEEEEEeecccCCceecchhHHHHhhhhc---cccccc
Confidence            333345677777778999999999999999887654   455543

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=97.27  E-value=0.0009  Score=49.03  Aligned_cols=44  Identities=11%  Similarity=-0.012  Sum_probs=34.3

Q ss_pred             cCcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910            5 VSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR   50 (217)
Q Consensus         5 ~~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~   50 (217)
                      ++.+.-..++.|..|+-.-||+|-...+.|.++.++|++  ++.+.
T Consensus        25 ~~Lsd~kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~--~v~~v   68 (187)
T d2cvba1          25 YRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRG--KVAFV   68 (187)
T ss_dssp             EEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTT--TEEEE
T ss_pred             EEHHHhCCCeEEEEEeCCCCccchhhhhhhhhhhhhccc--cceee
Confidence            445554567778888899999999999999999999974  34443

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.19  E-value=0.0088  Score=40.58  Aligned_cols=38  Identities=13%  Similarity=-0.000  Sum_probs=30.5

Q ss_pred             cCcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910            5 VSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (217)
Q Consensus         5 ~~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~   42 (217)
                      ++...-..++.|..|+-.-||.|....+.|.++.++|+
T Consensus        18 ~~l~~~~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~   55 (134)
T d1zzoa1          18 FHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP   55 (134)
T ss_dssp             EEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT
T ss_pred             EeHHHhCCCEEEEEecccccCcccccchhhHHHHhhhc
Confidence            34444456778888888999999999999999998876

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=97.00  E-value=0.0046  Score=42.59  Aligned_cols=46  Identities=15%  Similarity=0.087  Sum_probs=34.6

Q ss_pred             ccCcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910            4 SVSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR   50 (217)
Q Consensus         4 ~~~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~   50 (217)
                      .++...-..++.|..|+-.-||+|....+.|.++.++++. .++.+.
T Consensus        15 ~~~l~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~-~~~~~i   60 (143)
T d2fy6a1          15 PASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKF-SSANLI   60 (143)
T ss_dssp             BGGGGCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGG-TTSEEE
T ss_pred             EeeHHHhCCCEEEEEEECCCCccccccCcchhhhhhhhcc-CCcEEE
Confidence            3444555667788888889999999999999999887763 345554

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.99  E-value=0.00041  Score=43.28  Aligned_cols=58  Identities=16%  Similarity=0.314  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCC-CHHHHHHHH
Q 027910          145 KEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQ-PPEVYLRAF  212 (217)
Q Consensus       145 ~~~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~-~~~~l~~~i  212 (217)
                      .+...+++++.|++.+-..+          +|..+..+.||-+||.++|||+.++.|.. +.+++.+.|
T Consensus        18 ~~~v~~a~~e~gi~a~v~kv----------~d~~ei~~ygVmstPalvIdg~vv~~G~vPs~~ei~~~L   76 (77)
T d1iloa_          18 EKNAREAVKELGIDAEFEKI----------KEMDQILEAGLTALPGLAVDGELKIMGRVASKEEIKKIL   76 (77)
T ss_dssp             HHHHHHHHHHTTCCEEEEEE----------CSHHHHHHHTCSSSSCEEETTEEEECSSCCCHHHHHHHC
T ss_pred             HHHHHHHHHHcCCceEEEEe----------CCHHHHHHcCCcCCCEEEECCEEEEEecCCCHHHHHHHh
Confidence            35666778889998663222          23444557999999999999998889965 678877654

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=96.82  E-value=0.011  Score=40.62  Aligned_cols=35  Identities=14%  Similarity=0.032  Sum_probs=25.2

Q ss_pred             cCcccCCcceEEEEEecccCchhhhhHHHHHHHHH
Q 027910            5 VSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIA   39 (217)
Q Consensus         5 ~~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~   39 (217)
                      ++.+.-..++.|..|+-.-||.|....+.+.++.+
T Consensus        24 ~~~~~~kgK~vll~fwa~wC~~C~~~~p~l~~l~~   58 (144)
T d1knga_          24 LDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGK   58 (144)
T ss_dssp             BCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTT
T ss_pred             cCHHHhCCCEEEEEeeccccccccccCchhhhhhh
Confidence            33344355777887778899999988888776643

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.60  E-value=0.0022  Score=43.28  Aligned_cols=45  Identities=22%  Similarity=0.236  Sum_probs=35.9

Q ss_pred             HHHHHHHHHhCCCCeecEEEE--CCe--eeecCCCCHHHHHHHHHHHhC
Q 027910          173 EVHEELKKYSANISGVPHFVL--NGK--HELSGGQPPEVYLRAFQVAAN  217 (217)
Q Consensus       173 ~~~~~~~a~~~gv~g~Pt~vv--~g~--~~~~G~~~~~~l~~~i~~~~~  217 (217)
                      ..++.+.+.+.||.++||+++  ||+  ..+.|..+.++|.+.|+++.+
T Consensus        71 ~d~~~~l~~~~~V~~~Pt~~~~~~G~~v~~~~G~~~~~~l~~~i~~lLd  119 (119)
T d2es7a1          71 LEQSEAIGDRFNVRRFPATLVFTDGKLRGALSGIHPWAELLTLMRSIVD  119 (119)
T ss_dssp             HHHHHHHHHTTTCCSSSEEEEESCC----CEESCCCHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHhcCcCcceEEEEEEcCeEEEEeeCCCCHHHHHHHHHHHhC
Confidence            345567788999999999988  666  346899999999999998753

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=96.48  E-value=0.0016  Score=42.84  Aligned_cols=39  Identities=18%  Similarity=0.353  Sum_probs=31.9

Q ss_pred             HHHhCCCCeecEEEE--CCe--eeecCCCCHHHHHHHHHHHhC
Q 027910          179 KKYSANISGVPHFVL--NGK--HELSGGQPPEVYLRAFQVAAN  217 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~g~--~~~~G~~~~~~l~~~i~~~~~  217 (217)
                      .+.+.+|.|+||+++  +|+  ..+.|..+.+.|.+.|++..|
T Consensus        65 l~~~~~V~~~Pt~~~~~~G~~v~~~~G~~~~~~l~~~i~~~L~  107 (107)
T d1dbya_          65 VASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYLN  107 (107)
T ss_dssp             HHHHHTCCSSCEEEEESSSSEEEEEESCCCHHHHHHHHHHHCC
T ss_pred             HHHHhcccceEEEEEEECCeEEEEEeCCCCHHHHHHHHHHhhC
Confidence            456788999999988  675  235799999999999998765

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=96.42  E-value=0.0031  Score=41.47  Aligned_cols=39  Identities=18%  Similarity=0.242  Sum_probs=32.3

Q ss_pred             HHHhCCCCeecEEEE--CCe--eeecCCCCHHHHHHHHHHHhC
Q 027910          179 KKYSANISGVPHFVL--NGK--HELSGGQPPEVYLRAFQVAAN  217 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~g~--~~~~G~~~~~~l~~~i~~~~~  217 (217)
                      .+.+.||.++||+++  +|+  ..+.|..+.+.|.+.|++..|
T Consensus        66 l~~~~~I~~~Pt~~~~~~g~~v~~~~G~~~~~~l~~~i~~~Ln  108 (108)
T d1thxa_          66 TVKKYKVEGVPALRLVKGEQILDSTEGVISKDKLLSFLDTHLN  108 (108)
T ss_dssp             HHHHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             HHHHhcccCCCEEEEEECCEEEEEEeCCCCHHHHHHHHHHhcC
Confidence            456789999999988  676  246899999999999998765

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=96.35  E-value=0.065  Score=37.89  Aligned_cols=47  Identities=17%  Similarity=0.002  Sum_probs=35.2

Q ss_pred             cCcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEe
Q 027910            5 VSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWH   52 (217)
Q Consensus         5 ~~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~   52 (217)
                      ++.+.-..++.|.+|+-.-||.|-...+.+.++.++|.. .++.|.+.
T Consensus        49 v~L~~~kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~-~~~~vv~v   95 (176)
T d1jfua_          49 KKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSG-PNFEVVAI   95 (176)
T ss_dssp             EEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCB-TTEEEEEE
T ss_pred             EeHHHhCCCEEEEEeccCcccchHHHHHhhhhccccccc-cccccccc
Confidence            334444567888888889999999999999998888763 45666553

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=96.18  E-value=0.0071  Score=36.85  Aligned_cols=56  Identities=13%  Similarity=0.083  Sum_probs=37.1

Q ss_pred             HHHHHHHHHcCCCcccccccC-cccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHH
Q 027910          146 EFLVECARKVGVEGAAEFLDD-PNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLR  210 (217)
Q Consensus       146 ~~L~~ia~~~Gld~~~~~l~~-~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~  210 (217)
                      ..+++++.+.|++-....+++ ++..       +.....|..++|++++||+ .+.|++ ++.|.+
T Consensus        15 ~~ak~~L~~~~i~~~~~~i~~~~~~~-------~~~~~~g~~tvP~i~i~g~-~igGf~-~d~l~~   71 (74)
T d1r7ha_          15 TATKKALDRAGLAYNTVDISLDDEAR-------DYVMALGYVQAPVVEVDGE-HWSGFR-PERIKQ   71 (74)
T ss_dssp             HHHHHHHHHTTCCCEEEETTTCHHHH-------HHHHHTTCBCCCEEEETTE-EEESCC-HHHHHH
T ss_pred             HHHHHHHHHcCCceEEEEccCCHHHH-------HHHHHhCCCCcCEEEECCE-EEeCCC-HhHHHH
Confidence            346677888899877663333 3222       2224568999999999998 578874 455544

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=96.11  E-value=0.0044  Score=40.31  Aligned_cols=37  Identities=19%  Similarity=0.363  Sum_probs=30.8

Q ss_pred             HHHhCCCCeecEEEE--CCe--eeecCCCCHHHHHHHHHHH
Q 027910          179 KKYSANISGVPHFVL--NGK--HELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~g~--~~~~G~~~~~~l~~~i~~~  215 (217)
                      .+.+.||.|+||+++  +|+  ..+.|..+.+.|...|++.
T Consensus        63 l~~~~~V~~~Pt~~~~~~G~~v~~~~G~~~~~~l~~~i~~~  103 (104)
T d1fb6a_          63 IATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKY  103 (104)
T ss_dssp             HHHHTTCCSSSEEEEEETTEEEEEEEECCCHHHHHHHHHHH
T ss_pred             hhhhcceeeeeEEEEEEcCeEEEEEeCCCCHHHHHHHHHHh
Confidence            567889999999988  676  3468999999999999874

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=96.11  E-value=0.0023  Score=41.87  Aligned_cols=37  Identities=24%  Similarity=0.364  Sum_probs=30.0

Q ss_pred             HHhCCCCeecEEEE--CCe--eeecCCCCHHHHHHHHHHHh
Q 027910          180 KYSANISGVPHFVL--NGK--HELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       180 a~~~gv~g~Pt~vv--~g~--~~~~G~~~~~~l~~~i~~~~  216 (217)
                      +.+.||.|+||+++  +|+  ..+.|..+.+.|.+.|+++.
T Consensus        64 ~~~~~V~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~i~~~L  104 (105)
T d1nw2a_          64 TSQFGIMSIPTLILFKGGEPVKQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             HHHTTCCBSSEEEEEETTEEEEEEESCCCHHHHHHHTTTTC
T ss_pred             HHHCCcceeeEEEEEECCEEEEEEECCCCHHHHHHHHHHHh
Confidence            45779999999988  676  34689999999999887653

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=95.95  E-value=0.0067  Score=41.61  Aligned_cols=44  Identities=14%  Similarity=0.092  Sum_probs=36.3

Q ss_pred             HHHHHHHHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHHh
Q 027910          173 EVHEELKKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       173 ~~~~~~~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~~  216 (217)
                      ..++.+.+.+.||.|+||+++  ||+.  .+.|..+.++|.+.|+.+.
T Consensus        77 ~d~~~~la~~~~V~~~PT~~~~~~G~~v~~~~G~~~~~~l~~~i~~ll  124 (132)
T d2hfda1          77 LEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLV  124 (132)
T ss_dssp             HHHHHHHHHHHTCCSCCEEEEEETTEEEEEECCCSCHHHHHHHHHHHH
T ss_pred             ecCCHHHHHhhccCcceeEEEEEcCcEeeeecCCCCHHHHHHHHHHHh
Confidence            345667888999999999988  7873  4689999999999998764

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=95.87  E-value=0.0072  Score=39.52  Aligned_cols=38  Identities=18%  Similarity=0.268  Sum_probs=30.8

Q ss_pred             HHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHHh
Q 027910          179 KKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~~  216 (217)
                      .+.+.||.|+||+++  +|+.  .+.|..+.+.|.+.|++..
T Consensus        66 l~~~~~v~~~PT~~~~~~G~~v~~~~G~~~~~~l~~~i~~~L  107 (108)
T d2trxa_          66 TAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             HHHHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             HHHHhCCCcEEEEEEEECCEEEEEEeCCCCHHHHHHHHHHhc
Confidence            456789999999988  6763  3689999999999998753

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.84  E-value=0.093  Score=36.92  Aligned_cols=53  Identities=19%  Similarity=0.179  Sum_probs=36.2

Q ss_pred             cCcccCCcceEEEEEecccCc-hhhhhHHHHHHHHHhcCCCCceeEEEeecccCC
Q 027910            5 VSSSAGKKLIRIDVSSDTVCP-WCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNP   58 (217)
Q Consensus         5 ~~~~~~~~~v~i~~y~D~~CP-~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~   58 (217)
                      ++.+.=..++.|..|+-..|| +|-...+.+.++.+++.. .+.+|.+..+++++
T Consensus        24 vsl~d~~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~-~~~~v~~v~isiDp   77 (172)
T d1xzoa1          24 VSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKA-ENIDVRIISFSVDP   77 (172)
T ss_dssp             EETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHH-TTCCCEEEEEESCT
T ss_pred             EcHHHhCCCEEEEEEecccccccccccchhhhhhhhhhcc-cccccccccccccc
Confidence            344444567888888888897 799999888888877752 23344444556555

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.82  E-value=0.0028  Score=41.39  Aligned_cols=38  Identities=13%  Similarity=0.121  Sum_probs=31.4

Q ss_pred             HHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHHHHh
Q 027910          178 LKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       178 ~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~~~~  216 (217)
                      ..+.+.|+. +|+++|||+..+.|.-+.+.|.+.|++++
T Consensus        58 ~l~~~y~~~-VPvl~idg~~~~~g~~d~~~L~~~L~~l~   95 (100)
T d1wjka_          58 TWYERYKFD-IPVFHLNGQFLMMHRVNTSKLEKQLRKLS   95 (100)
T ss_dssp             HHHHHSSSS-CSEEEESSSEEEESSCCHHHHHHHHHSSS
T ss_pred             HHHHHhccc-CCceeecCceEEeCCCCHHHHHHHHHHHh
Confidence            345567776 99999999877889889999999998764

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.76  E-value=0.021  Score=37.72  Aligned_cols=63  Identities=13%  Similarity=0.028  Sum_probs=39.0

Q ss_pred             HHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHH
Q 027910          147 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAF  212 (217)
Q Consensus       147 ~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i  212 (217)
                      .|.+++.+.+.....+.++..   .......+.+.+.||.|+||+++  +|+.  ++.|..+.++|.+.|
T Consensus        47 ~l~~~~~~~~~~v~~v~~~~~---~~~~~~~~~~~~~~V~~~PTli~~~~gk~~~~~~G~~~~~el~~fl  113 (115)
T d1zmaa1          47 TLSGVVAETKAHIYFINSEEP---SQLNDLQAFRSRYGIPTVPGFVHITDGQINVRCDSSMSAQEIKDFA  113 (115)
T ss_dssp             HHHHHHHHHCCCCEEEETTCG---GGHHHHHHHHHHHTCCSSCEEEEEETTEEEEECCTTCCHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhhheeecc---cccccccccccccccccccEEEEEECCEEEEEEcCCCCHHHHHHHH
Confidence            445556665554322223221   12233334567889999999987  6763  357999999988766

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.0089  Score=38.95  Aligned_cols=35  Identities=20%  Similarity=0.358  Sum_probs=28.0

Q ss_pred             HHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHH
Q 027910          180 KYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       180 a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~  215 (217)
                      +.+.||.|+|||++  ||+.  .+.|. +.+.|++.|+++
T Consensus        66 ~~~~~V~~~Pt~~~~~~G~~v~~~~G~-~~~~l~~~i~~~  104 (105)
T d2ifqa1          66 ASECEVKCMPTFQFFKKGQKVGEFSGA-NKEKLEATINEL  104 (105)
T ss_dssp             HHHTTCCBSSEEEEEETTEEEEEEESC-CHHHHHHHHHHH
T ss_pred             HHHcCceEEEEEEEEECCEEEEEEeCC-CHHHHHHHHHhh
Confidence            56789999999988  7762  45786 678899999875

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=95.39  E-value=0.01  Score=39.29  Aligned_cols=36  Identities=28%  Similarity=0.365  Sum_probs=28.1

Q ss_pred             HHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHHh
Q 027910          180 KYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       180 a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~~  216 (217)
                      +.+.||.|+|||++  +|+.  .+.|. ..+.+.+.|++++
T Consensus        72 ~~~~~V~~~Pt~~~~k~G~~v~~~~G~-~~~~l~e~i~~~~  111 (112)
T d1f9ma_          72 AKELGIRVVPTFKILKENSVVGEVTGA-KYDKLLEAIQAAR  111 (112)
T ss_dssp             HHHHCCSSSSEEEEEETTEEEEEEESS-CHHHHHHHHHHHH
T ss_pred             HhheeeccCCEEEEEECCEEEEEEeCC-CHHHHHHHHHHcc
Confidence            45679999999988  7763  36787 5678888888765

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=95.37  E-value=0.014  Score=38.50  Aligned_cols=39  Identities=15%  Similarity=0.308  Sum_probs=30.4

Q ss_pred             HHHHHHhCCCCeecEEEE---CCee----eecCCCCHHHHHHHHHH
Q 027910          176 EELKKYSANISGVPHFVL---NGKH----ELSGGQPPEVYLRAFQV  214 (217)
Q Consensus       176 ~~~~a~~~gv~g~Pt~vv---~g~~----~~~G~~~~~~l~~~i~~  214 (217)
                      +.+.+.+.||.|+||+++   +|+.    .+.|..+.+.|++.|++
T Consensus        71 ~~~l~~~~~v~~~Pt~~~~~~~G~~~~~~~~~G~~~~~~~~~~l~~  116 (117)
T d2fwha1          71 DVALLKHLNVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRD  116 (117)
T ss_dssp             HHHHHHHTTCCSSSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred             HHHHHhhhehhhceEEEEEeCCCcEEecccccccCCHHHHHHHHhc
Confidence            445677899999999987   3542    35799999999998874

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.37  E-value=0.0065  Score=39.47  Aligned_cols=36  Identities=22%  Similarity=0.338  Sum_probs=28.1

Q ss_pred             HHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHH
Q 027910          179 KKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~  215 (217)
                      .+.+.||.|+||+++  +|+.  .+.|. +.+.|.+.|++-
T Consensus        63 ~~~~~~V~~~Pt~i~~k~G~~v~~~~G~-~~~~l~~~i~k~  102 (103)
T d1syra_          63 VTEKENITSMPTFKVYKNGSSVDTLLGA-NDSALKQLIEKY  102 (103)
T ss_dssp             HHHHTTCCSSSEEEEEETTEEEEEEESC-CHHHHHHHHHTT
T ss_pred             eeeeeeeecceEEEEEECCEEEEEEeCc-CHHHHHHHHHhh
Confidence            457889999999988  7862  45786 678899888764

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=95.19  E-value=0.0096  Score=39.37  Aligned_cols=38  Identities=21%  Similarity=0.326  Sum_probs=29.5

Q ss_pred             HHHHhCCCCeecEEEE--CCe--eeecCCCCHHHHHHHHHHHh
Q 027910          178 LKKYSANISGVPHFVL--NGK--HELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       178 ~~a~~~gv~g~Pt~vv--~g~--~~~~G~~~~~~l~~~i~~~~  216 (217)
                      ..+.+.||.++|||++  +|+  ..+.|. +.+.|.+.|++.+
T Consensus        69 ~l~~~~~v~~~Pt~~~~~~G~~v~~~~G~-~~~~l~~~i~k~~  110 (112)
T d1ep7a_          69 AVAEAAGITAMPTFHVYKDGVKADDLVGA-SQDKLKALVAKHA  110 (112)
T ss_dssp             HHHHHHTCCBSSEEEEEETTEEEEEEESC-CHHHHHHHHHHHH
T ss_pred             cccccccccCCCEEEEEECCEEEEEEeCc-CHHHHHHHHHHHh
Confidence            4566789999999988  676  235785 7899999998754

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.03  E-value=0.012  Score=38.91  Aligned_cols=37  Identities=16%  Similarity=0.263  Sum_probs=28.6

Q ss_pred             HHHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHH
Q 027910          178 LKKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       178 ~~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~  215 (217)
                      ..+.+.||.|+|||++  +|+.  .+.|. +.+.|.+.|++-
T Consensus        72 ~l~~~~~V~~~Pt~~~~~~G~~v~~~~G~-~~~~l~~~i~k~  112 (114)
T d1xfla_          72 SVASDWAIQAMPTFMFLKEGKILDKVVGA-KKDELQSTIAKH  112 (114)
T ss_dssp             HHHHHTTCCSSSEEEEEETTEEEEEEESC-CHHHHHHHHHHH
T ss_pred             eeccccceeeeEEEEEEECCEEEEEEeCc-CHHHHHHHHHHh
Confidence            3567899999999987  7762  35786 689999988764

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.98  E-value=0.015  Score=38.04  Aligned_cols=37  Identities=19%  Similarity=0.227  Sum_probs=29.1

Q ss_pred             HHHhCCCCeecEEEE--CCe--eeecCCCCHHHHHHHHHHHh
Q 027910          179 KKYSANISGVPHFVL--NGK--HELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~g~--~~~~G~~~~~~l~~~i~~~~  216 (217)
                      .+.+.||.++|||++  +|+  ..+.|. +.+.|.+.|++..
T Consensus        66 l~~~~~v~~~Pt~~~~~~G~~v~~~~G~-~~~~l~~~i~k~l  106 (107)
T d1gh2a_          66 TAATNNISATPTFQFFRNKVRIDQYQGA-DAVGLEEKIKQHL  106 (107)
T ss_dssp             HHHHTTCCSSSEEEEEETTEEEEEEESS-CHHHHHHHHHHHH
T ss_pred             hhhhcCceeceEEEEEECCEEEEEEeCC-CHHHHHHHHHHhh
Confidence            456889999999988  776  235786 7888999988753

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=94.79  E-value=0.025  Score=38.60  Aligned_cols=49  Identities=14%  Similarity=0.043  Sum_probs=39.2

Q ss_pred             ccCcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEe
Q 027910            4 SVSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWH   52 (217)
Q Consensus         4 ~~~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~   52 (217)
                      .++.+.=..++.|.+|+..-||.|....+.|.++.++|....++.+.+.
T Consensus        18 ~v~l~~l~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~i   66 (144)
T d1o8xa_          18 EVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFC   66 (144)
T ss_dssp             EEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEE
T ss_pred             EEeHHHhCCCEEEEEeccccccccccccchhHHhhhhcccccccccccc
Confidence            3445555678899999999999999999999999999976656766643

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.67  E-value=0.011  Score=36.95  Aligned_cols=36  Identities=22%  Similarity=0.556  Sum_probs=30.2

Q ss_pred             ceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910           13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR   50 (217)
Q Consensus        13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~   50 (217)
                      .|+|.+|+-+-||+|..+.+.+.++.++|++  ++.+.
T Consensus         2 ~v~v~~F~a~wC~~C~~~~p~~~~l~~~~~~--~v~~~   37 (85)
T d1nhoa_           2 VVNIEVFTSPTCPYCPMAIEVVDEAKKEFGD--KIDVE   37 (85)
T ss_dssp             CCCEEEESCSSSCCSTTHHHHHHHHHHHHCS--SCCEE
T ss_pred             EEEEEEEECCCCcchHHHHHHHhhhcccccc--ccccc
Confidence            4678999999999999999999999998864  34444

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.51  E-value=0.04  Score=35.14  Aligned_cols=38  Identities=8%  Similarity=-0.002  Sum_probs=30.7

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEE
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRW   51 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~   51 (217)
                      ..++.|.+|+.+-||+|-.+.+.+.++.+.++   ++.+..
T Consensus        14 ~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~~---~i~~~~   51 (96)
T d1hyua4          14 DGDFEFETYYSLSCHNCPDVVQALNLMAVLNP---RIKHTA   51 (96)
T ss_dssp             CSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT---TEEEEE
T ss_pred             CCCeEEEEEECCCCcchHHHHHHHHHHHHhCC---ceEEEE
Confidence            46788999999999999999999998877654   455543

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=94.24  E-value=0.03  Score=34.11  Aligned_cols=54  Identities=13%  Similarity=0.163  Sum_probs=34.8

Q ss_pred             HHHHHHHHHcCCCcccccccC-cccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHH
Q 027910          146 EFLVECARKVGVEGAAEFLDD-PNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVY  208 (217)
Q Consensus       146 ~~L~~ia~~~Gld~~~~~l~~-~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l  208 (217)
                      ..+.+++.+.|++-+...++. ++..       +.....|..++|.++|||+ .+.|++ ++.+
T Consensus        15 ~~ak~~L~~~~i~y~~~~i~~~~~~~-------~~~~~~g~~tvP~i~i~~~-~i~Gf~-~d~i   69 (76)
T d1h75a_          15 HATKRAMENRGFDFEMINVDRVPEAA-------EALRAQGFRQLPVVIAGDL-SWSGFR-PDMI   69 (76)
T ss_dssp             HHHHHHHHHTTCCCEEEETTTCHHHH-------HHHHHTTCCSSCEEEETTE-EEESCC-HHHH
T ss_pred             HHHHHHHHhcCceeEEEeecCCHHHH-------HHHHhcCCCCCCEEEECCE-EEECCC-HHHH
Confidence            345667788888766553332 2211       1223468999999999998 577874 4444

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=94.15  E-value=0.016  Score=38.24  Aligned_cols=37  Identities=19%  Similarity=0.278  Sum_probs=27.8

Q ss_pred             HHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHHh
Q 027910          179 KKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~~  216 (217)
                      .+.+.||.|+|||++  ||+.  .+.|. +.+.|.+.|++-+
T Consensus        71 l~~~~~I~~~Pt~~~~k~G~~v~~~~G~-~~~~l~~~i~k~a  111 (113)
T d1ti3a_          71 VAEEWNVEAMPTFIFLKDGKLVDKTVGA-DKDGLPTLVAKHA  111 (113)
T ss_dssp             HHHHHHCSSTTEEEEEETTEEEEEEECC-CTTHHHHHHHHHH
T ss_pred             ccccCeecccceEEEEECCEEEEEEcCC-CHHHHHHHHHHHh
Confidence            345678999999988  7862  35685 6788999998753

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=93.98  E-value=0.048  Score=35.88  Aligned_cols=37  Identities=16%  Similarity=0.339  Sum_probs=28.0

Q ss_pred             HHHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHH
Q 027910          178 LKKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       178 ~~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~  215 (217)
                      ..+.+.||.|+||+++  +|+.  .+.|. .++.+.+.|+++
T Consensus        70 ~l~~~~~V~~~Pt~~~~~~G~~v~~~~G~-~~~~l~~~l~~~  110 (113)
T d1r26a_          70 EIVSKCRVLQLPTFIIARSGKMLGHVIGA-NPGMLRQKLRDI  110 (113)
T ss_dssp             HHHHHTTCCSSSEEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred             hhHHHccccCCCEEEEEECCEEEEEEeCC-CHHHHHHHHHHH
Confidence            4567889999999988  7763  45786 467788887765

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=93.92  E-value=0.038  Score=34.40  Aligned_cols=36  Identities=19%  Similarity=0.469  Sum_probs=27.5

Q ss_pred             eEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEe
Q 027910           14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWH   52 (217)
Q Consensus        14 v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~   52 (217)
                      |+|.+|+=..||||..+...|.++-.+|.   ++.++..
T Consensus         1 Mkvviysk~~Cp~C~~aK~ll~~~~~~~~---~i~~~~~   36 (85)
T d1egoa_           1 MQTVIFGRSGCPYCVRAKDLAEKLSNERD---DFQYQYV   36 (85)
T ss_dssp             CEEEEECCTTSTHHHHHHHHHHHHHHHHS---SCEEEEE
T ss_pred             CEEEEEeCCCCHhHHHHHHHHHHcCCCCC---CceEEEE
Confidence            68999999999999999988887655544   3555433

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.63  E-value=0.058  Score=35.13  Aligned_cols=35  Identities=29%  Similarity=0.459  Sum_probs=25.8

Q ss_pred             HHHhCCCCeecEEEE--CCe--eeecCCCCHHHHHHHHHH
Q 027910          179 KKYSANISGVPHFVL--NGK--HELSGGQPPEVYLRAFQV  214 (217)
Q Consensus       179 ~a~~~gv~g~Pt~vv--~g~--~~~~G~~~~~~l~~~i~~  214 (217)
                      .+.+.||.++|||++  ||+  ..+.|. ..+.|++.|++
T Consensus        71 l~~~~~V~~~Pt~~~~~~G~~v~~~~G~-~~~~l~~~I~~  109 (111)
T d1xwaa_          71 IAMEYNISSMPTFVFLKNGVKVEEFAGA-NAKRLEDVIKA  109 (111)
T ss_dssp             HHHHTTCCSSSEEEEEETTEEEEEEESC-CHHHHHHHHHH
T ss_pred             hhhcCCCccccEEEEEECCEEEEEEeCC-CHHHHHHHHHh
Confidence            345788999999988  676  345787 45778888864

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=93.51  E-value=0.021  Score=34.63  Aligned_cols=33  Identities=18%  Similarity=0.355  Sum_probs=24.3

Q ss_pred             eEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeec
Q 027910           14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPF   54 (217)
Q Consensus        14 v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~   54 (217)
                      |+|.+|+-+.||||..+...|.+        .++.++.+.+
T Consensus         1 M~v~iYt~~~C~~C~~ak~~L~~--------~~i~~~~~~i   33 (74)
T d1r7ha_           1 MSITLYTKPACVQCTATKKALDR--------AGLAYNTVDI   33 (74)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHH--------TTCCCEEEET
T ss_pred             CEEEEEeCCCChhHHHHHHHHHH--------cCCceEEEEc
Confidence            57999999999999997776642        2455555544

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=93.31  E-value=0.023  Score=34.66  Aligned_cols=22  Identities=27%  Similarity=0.632  Sum_probs=18.9

Q ss_pred             eEEEEEecccCchhhhhHHHHH
Q 027910           14 IRIDVSSDTVCPWCFVGKRNLD   35 (217)
Q Consensus        14 v~i~~y~D~~CP~cy~~~~~l~   35 (217)
                      |+|.+|+-+.||||..+...|.
T Consensus         1 Mki~iYs~~~C~~C~~ak~~L~   22 (76)
T d1h75a_           1 MRITIYTRNDCVQCHATKRAME   22 (76)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCccHHHHHHHHH
Confidence            5689999999999999877664

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=92.71  E-value=0.051  Score=33.48  Aligned_cols=51  Identities=14%  Similarity=0.139  Sum_probs=32.1

Q ss_pred             HHHHHHHHHcCCCcccccccC-cccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCC
Q 027910          146 EFLVECARKVGVEGAAEFLDD-PNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQ  203 (217)
Q Consensus       146 ~~L~~ia~~~Gld~~~~~l~~-~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~  203 (217)
                      ..+.+++++.|++-....+++ ++.++    ...  ...|...+|.++|||+ .|.|..
T Consensus        15 ~~ak~~L~~~~i~y~~~di~~~~~~~~----~~~--~~~g~~tvP~i~i~~~-~IGG~~   66 (82)
T d1fova_          15 HRAKALLSSKGVSFQELPIDGNAAKRE----EMI--KRSGRTTVPQIFIDAQ-HIGGYD   66 (82)
T ss_dssp             HHHHHHHHHHTCCCEEEECTTCSHHHH----HHH--HHHSSCCSCEEEETTE-EEESHH
T ss_pred             HHHHHHHHHcCCCeEEEeccchHHHHH----HHH--HHhCCCCCCeEEECCE-EEecHH
Confidence            345667788888766554443 32222    222  2247788999999999 467764

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=92.67  E-value=0.052  Score=32.72  Aligned_cols=50  Identities=14%  Similarity=0.203  Sum_probs=32.4

Q ss_pred             HHHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCC
Q 027910          146 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGG  202 (217)
Q Consensus       146 ~~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~  202 (217)
                      ..+++++.+.|++-....++.+...+.+      ....|...+|.++|||+ .|.|.
T Consensus        19 ~~ak~lL~~~~i~~~~~~v~~~~~~~~~------~~~~~~~tvP~i~i~g~-~IGG~   68 (74)
T d1nm3a1          19 AKAKQLLHDKGLSFEEIILGHDATIVSV------RAVSGRTTVPQVFIGGK-HIGGS   68 (74)
T ss_dssp             HHHHHHHHHHTCCCEEEETTTTCCHHHH------HHHTCCSSSCEEEETTE-EEESH
T ss_pred             HHHHHHHHHcCCCeEEEEccCcHHHHHH------HHHhCCccCCEEEECCE-EEECh
Confidence            3456677788887766544433222222      23568899999999998 56776

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=92.41  E-value=0.18  Score=34.16  Aligned_cols=48  Identities=19%  Similarity=0.045  Sum_probs=37.5

Q ss_pred             cCcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEe
Q 027910            5 VSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWH   52 (217)
Q Consensus         5 ~~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~   52 (217)
                      ++...=..++.|..|+-.-||.|-...+.|.++.++|....++.+...
T Consensus        21 v~l~~~~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~i   68 (144)
T d1o73a_          21 VSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLI   68 (144)
T ss_dssp             BCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEE
T ss_pred             EeHHHhCCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEE
Confidence            455555668888888899999999999999999998875555666543

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=92.34  E-value=0.078  Score=35.24  Aligned_cols=39  Identities=5%  Similarity=0.031  Sum_probs=31.6

Q ss_pred             HHHHhCCCCeecEEEE--CCe-eeecCCCCHHHHHHHHHHHh
Q 027910          178 LKKYSANISGVPHFVL--NGK-HELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       178 ~~a~~~gv~g~Pt~vv--~g~-~~~~G~~~~~~l~~~i~~~~  216 (217)
                      ..+.+.+|.|+||+++  +|+ ....|..+.+.|.+.|.++.
T Consensus        80 ~l~~~~~I~~yPTi~~f~~g~~~~y~G~r~~~~l~~fi~~~l  121 (124)
T d1a8ya1          80 AVAKKLGLTEEDSIYVFKEDEVIEYDGEFSADTLVEFLLDVL  121 (124)
T ss_dssp             HHHHTTTCCSTTCEEEEESSSEEECCSCCSHHHHHHHHHHHH
T ss_pred             chhhccccccCCcEEEeccCccEEeeCCCCHHHHHHHHHHhc
Confidence            4578899999999977  565 23579999999999998764

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=92.06  E-value=0.049  Score=32.86  Aligned_cols=22  Identities=27%  Similarity=0.617  Sum_probs=18.5

Q ss_pred             EEEEEecccCchhhhhHHHHHH
Q 027910           15 RIDVSSDTVCPWCFVGKRNLDK   36 (217)
Q Consensus        15 ~i~~y~D~~CP~cy~~~~~l~~   36 (217)
                      +|++|+-+.||||..+...|.+
T Consensus         6 ~I~iYs~~~C~~C~~ak~lL~~   27 (74)
T d1nm3a1           6 SISIFTKPGCPFCAKAKQLLHD   27 (74)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCHHHHHHHHHHHH
Confidence            5789999999999998876653

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=91.97  E-value=0.065  Score=33.27  Aligned_cols=28  Identities=11%  Similarity=0.284  Sum_probs=20.0

Q ss_pred             hCCCCeecEEEECCeeeecCCCCHHHHHHHHH
Q 027910          182 SANISGVPHFVLNGKHELSGGQPPEVYLRAFQ  213 (217)
Q Consensus       182 ~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~  213 (217)
                      ..++..+|.++|||+ .|.|..   +|.+.++
T Consensus        53 ~~~~~tvPqIfi~g~-~IGG~~---el~~~~~   80 (85)
T d1egoa_          53 GKPVETVPQIFVDQQ-HIGGYT---DFAAWVK   80 (85)
T ss_dssp             CCCSCCSCEEEETTE-EEESSH---HHHHHHH
T ss_pred             cCCCCCCCEEEECCE-EEECHH---HHHHHHH
Confidence            346678999999999 577774   4555444

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=91.58  E-value=0.078  Score=35.70  Aligned_cols=29  Identities=17%  Similarity=0.062  Sum_probs=22.1

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHH
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIA   39 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~   39 (217)
                      ..++.|..|+-.-||.|-...|.|.++-+
T Consensus        19 ~Gk~vvl~FwatWC~pC~~e~p~l~~~~~   47 (136)
T d1z5ye1          19 QGKPVLLNVWATWCPTSRAEHQYLNQLSA   47 (136)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEEcCcCCCcCccccchhhhhh
Confidence            44566666777899999998888877643

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.67  E-value=0.22  Score=32.55  Aligned_cols=39  Identities=18%  Similarity=0.266  Sum_probs=30.0

Q ss_pred             HHHHhCCCCeecEEEE--CCe----eeecCCCCHHHHHHHHHHHh
Q 027910          178 LKKYSANISGVPHFVL--NGK----HELSGGQPPEVYLRAFQVAA  216 (217)
Q Consensus       178 ~~a~~~gv~g~Pt~vv--~g~----~~~~G~~~~~~l~~~i~~~~  216 (217)
                      +.+.+.+|.|+|||++  +|+    ....|..+.+.|.+.|++..
T Consensus        73 ~l~~~~~v~~~Pti~~f~~g~~~~~~~y~g~~~~~~l~~fi~k~~  117 (119)
T d2b5ea4          73 DLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQS  117 (119)
T ss_dssp             HHHHHTTCCSSSEEEEEETTCTTCEEECCSCCSHHHHHHHHHHHT
T ss_pred             HHHHHhccccCCeEEEEECCEEeeeEEecCCCCHHHHHHHHHHhh
Confidence            4567789999999988  664    23468889999999888753

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=90.53  E-value=0.092  Score=32.20  Aligned_cols=22  Identities=23%  Similarity=0.705  Sum_probs=18.2

Q ss_pred             EEEEEecccCchhhhhHHHHHH
Q 027910           15 RIDVSSDTVCPWCFVGKRNLDK   36 (217)
Q Consensus        15 ~i~~y~D~~CP~cy~~~~~l~~   36 (217)
                      .|.+|+-+.||||..+...|.+
T Consensus         2 ~I~iys~~~Cp~C~~ak~~L~~   23 (82)
T d1fova_           2 NVEIYTKETCPYCHRAKALLSS   23 (82)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHH
T ss_pred             cEEEEeCCCCHhHHHHHHHHHH
Confidence            4889999999999987776643

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=90.43  E-value=0.25  Score=33.55  Aligned_cols=47  Identities=13%  Similarity=-0.000  Sum_probs=37.3

Q ss_pred             cccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEee
Q 027910            7 SSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHP   53 (217)
Q Consensus         7 ~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p   53 (217)
                      .+.=..++.+..|+-.-||.|....+.|.++.++|.+..++.|....
T Consensus        23 ls~l~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs   69 (144)
T d1i5ga_          23 LPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLIS   69 (144)
T ss_dssp             GGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEE
T ss_pred             HHHcCCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEe
Confidence            34445678888888899999999999999999988865667776543

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=90.30  E-value=0.13  Score=33.51  Aligned_cols=31  Identities=23%  Similarity=0.326  Sum_probs=25.5

Q ss_pred             cceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (217)
Q Consensus        12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~   42 (217)
                      +...+.+|+-+-||+|....|.+.++.+++.
T Consensus        26 ~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~   56 (115)
T d1zmaa1          26 KETATFFIGRKTCPYCRKFAGTLSGVVAETK   56 (115)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEEcCCCCccHHHHHHHHHHHHHHhh
Confidence            3445777778999999999999999888664

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=89.88  E-value=0.22  Score=31.87  Aligned_cols=31  Identities=13%  Similarity=0.024  Sum_probs=25.3

Q ss_pred             ceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910           13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKD   43 (217)
Q Consensus        13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~   43 (217)
                      +..+..|+.+-||+|....+.+.++.++|.+
T Consensus        21 ~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~   51 (108)
T d1thxa_          21 QPVLVYFWASWCGPCQLMSPLINLAANTYSD   51 (108)
T ss_dssp             SCEEEEEECTTCTTHHHHHHHHHHHHHHTTT
T ss_pred             CcEEEEEECCCCCCccccchHHHHHHHhcCC
Confidence            3345666779999999999999999888865

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=89.42  E-value=0.22  Score=31.72  Aligned_cols=31  Identities=13%  Similarity=-0.001  Sum_probs=25.8

Q ss_pred             ceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910           13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKD   43 (217)
Q Consensus        13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~   43 (217)
                      +..|..|+-+-||.|....+.+.++.++|++
T Consensus        18 k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~   48 (105)
T d1nw2a_          18 KPVLVDFWAAWCGPCRMMAPVLEEFAEAHAD   48 (105)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CcEEEEEECCCCCCcccccchhhhhhhhcCC
Confidence            4555566679999999999999999988875

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.43  E-value=0.18  Score=32.93  Aligned_cols=35  Identities=17%  Similarity=0.360  Sum_probs=26.2

Q ss_pred             HHhCCCCeecEEEE--CCe----eeecCCCCHHHHHHHHHH
Q 027910          180 KYSANISGVPHFVL--NGK----HELSGGQPPEVYLRAFQV  214 (217)
Q Consensus       180 a~~~gv~g~Pt~vv--~g~----~~~~G~~~~~~l~~~i~~  214 (217)
                      +.+.+|.|+||+++  +|+    ....|..+.+.|.+.|++
T Consensus        74 ~~~~~i~~~Pt~~~~~~G~~~~~~~~~g~~~~~~l~~fi~~  114 (120)
T d1meka_          74 AQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKK  114 (120)
T ss_dssp             HHHHTCCSSSEEEEEESSCSSSCEECCCCSSHHHHHHHHHT
T ss_pred             HHHhCCccCCeEEEEECCeEeeeEEecCCCCHHHHHHHHHH
Confidence            34578999999866  553    234688899999988875

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.25  E-value=0.1  Score=34.59  Aligned_cols=37  Identities=8%  Similarity=0.131  Sum_probs=21.8

Q ss_pred             HHHHHHhCCCCeecEEEE--CCeeeecCC-CCHHHHHHHH
Q 027910          176 EELKKYSANISGVPHFVL--NGKHELSGG-QPPEVYLRAF  212 (217)
Q Consensus       176 ~~~~a~~~gv~g~Pt~vv--~g~~~~~G~-~~~~~l~~~i  212 (217)
                      +...+.+.||.|+||+++  +|+.+..+. ...+.++..+
T Consensus        78 ~~~l~~~~~V~~iPT~i~~~~g~~l~~~~~~~~~ll~~~~  117 (119)
T d1woua_          78 NNDFRKNLKVTAVPTLLKYGTPQKLVESECLQANLVEMLF  117 (119)
T ss_dssp             TCHHHHHHCCCSSSEEEETTSSCEEEGGGGGCHHHHHHHH
T ss_pred             hhhHHHhCCeEEEEEEEEEECCeEEeeeecCCHHHHHHHh
Confidence            344566789999999987  455333322 2334444444

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=88.13  E-value=0.44  Score=30.24  Aligned_cols=36  Identities=14%  Similarity=0.067  Sum_probs=26.8

Q ss_pred             ceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910           13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR   50 (217)
Q Consensus        13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~   50 (217)
                      +..|..|+.+-||+|....+.+.++.+++..  ++.+.
T Consensus        20 kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~   55 (107)
T d1dbya_          20 VPVLVDFWAPWCGPCRIIAPVVDEIAGEYKD--KLKCV   55 (107)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCEEE
T ss_pred             CcEEEEEECCCCCCccccChHHHHHHHhhcc--cceEE
Confidence            3445566667999999999999999887764  34443

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=87.85  E-value=0.3  Score=31.51  Aligned_cols=31  Identities=10%  Similarity=-0.095  Sum_probs=25.6

Q ss_pred             ceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910           13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKD   43 (217)
Q Consensus        13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~   43 (217)
                      +..+..|+.+-||+|....+.+.++.+.|..
T Consensus        21 k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~   51 (116)
T d2djja1          21 KDVLIEFYAPWCGHCKALAPKYEELGALYAK   51 (116)
T ss_dssp             SCEEEEEECSSCTTHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEEEecccccccccchHHHHHHHHHhc
Confidence            4556677779999999999999999887753

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.78  E-value=0.12  Score=33.12  Aligned_cols=23  Identities=22%  Similarity=0.408  Sum_probs=19.4

Q ss_pred             EEEEEecccCchhhhhHHHHHHH
Q 027910           15 RIDVSSDTVCPWCFVGKRNLDKA   37 (217)
Q Consensus        15 ~i~~y~D~~CP~cy~~~~~l~~~   37 (217)
                      +|++|+-..||+|-.+.+.|.++
T Consensus        18 ~i~lft~~~C~~C~~a~~~L~~~   40 (100)
T d1wjka_          18 VLTLFTKAPCPLCDEAKEVLQPY   40 (100)
T ss_dssp             EEEEEECSSCHHHHHHHHHTSTT
T ss_pred             EEEEEECCCCCChHHHHHHHHHh
Confidence            58889999999999988877644

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.88  E-value=0.47  Score=30.39  Aligned_cols=57  Identities=7%  Similarity=-0.049  Sum_probs=31.7

Q ss_pred             HHHHHHHHHcCCCcccc---cccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCH
Q 027910          146 EFLVECARKVGVEGAAE---FLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPP  205 (217)
Q Consensus       146 ~~L~~ia~~~Gld~~~~---~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~  205 (217)
                      ...++++.+.|+....+   .++...-...+++...  ...|...+|.++|+|+ .|.|....
T Consensus        26 ~~ak~ll~~~~~~~~~~~~~e~d~~~d~~~~~~~l~--~~~g~~tvPqIfi~g~-~IGG~~el   85 (105)
T d1ktea_          26 RKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQ--QLTGARTVPRVFIGKE-CIGGCTDL   85 (105)
T ss_dssp             HHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHH--HHHSCCCSCEEEETTE-EEESHHHH
T ss_pred             HHHHHHHHHhCCccceeeeeecccccccHHHHHHHh--hccCCCcCcEEEECCE-EEecHHHH
Confidence            34566777778765443   2221111122222222  2346788999999999 56777543

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.70  E-value=0.48  Score=32.37  Aligned_cols=40  Identities=8%  Similarity=-0.035  Sum_probs=29.4

Q ss_pred             HHHHHHhCCCCeecEEEE-C---Ce-eeecCCCCHHHHHHHHHHH
Q 027910          176 EELKKYSANISGVPHFVL-N---GK-HELSGGQPPEVYLRAFQVA  215 (217)
Q Consensus       176 ~~~~a~~~gv~g~Pt~vv-~---g~-~~~~G~~~~~~l~~~i~~~  215 (217)
                      ....+...++.|+|+++| +   |+ ....|..+++.|+..|++.
T Consensus        90 ~~~~~~~y~v~~~Pti~~idp~~ge~v~~~~~~~~~~fl~~L~~f  134 (147)
T d2dlxa1          90 GQRYIQFYKLGDFPYVSILDPRTGQKLVEWHQLDVSSFLDQVTGF  134 (147)
T ss_dssp             HHHHHHHHTCCSSSEEEEECTTTCCCCEEESSCCHHHHHHHHHHH
T ss_pred             hhhhhhheecCceeEEEEEeCCCCeEecccCCCCHHHHHHHHHHH
Confidence            344567889999999966 3   54 2346778999998888764

>d1eema2 c.47.1.5 (A:5-102) Class omega GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class omega GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.54  E-value=0.5  Score=29.89  Aligned_cols=33  Identities=21%  Similarity=0.246  Sum_probs=21.3

Q ss_pred             ccccCcccCCc----ceEEEEEecccCchhhhhHHHH
Q 027910            2 AQSVSSSAGKK----LIRIDVSSDTVCPWCFVGKRNL   34 (217)
Q Consensus         2 ~~~~~~~~~~~----~v~i~~y~D~~CP~cy~~~~~l   34 (217)
                      |.++.+|...+    .-++..|....||||....-.|
T Consensus         2 ~~~l~~~s~~p~~~~~~~~~Ly~~~~sP~~~rv~~~l   38 (98)
T d1eema2           2 ARSLGKGSAPPGPVPEGSIRIYSMRFCPFAERTRLVL   38 (98)
T ss_dssp             CCCBCTTCCCCCCCCTTCEEEEECTTCHHHHHHHHHH
T ss_pred             cccccCCCCCCCCCCCCcEEEEcCCCChHHHHHHHHH
Confidence            34445543333    3358889999999998755444

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.24  E-value=0.29  Score=31.79  Aligned_cols=54  Identities=19%  Similarity=0.206  Sum_probs=34.0

Q ss_pred             HHHHHHHHHcCCCcccc-cccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHH
Q 027910          146 EFLVECARKVGVEGAAE-FLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPE  206 (217)
Q Consensus       146 ~~L~~ia~~~Gld~~~~-~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~  206 (217)
                      ....+++.+.|++-... ..++++..+.+.    .  ..|...+|.++|+|+ .|.|..+..
T Consensus        34 ~~ak~lL~~~~i~~~~~~v~~~~~~~~~l~----~--~t~~~TvPqIFi~g~-~IGG~ddl~   88 (109)
T d1wika_          34 KQILEILNSTGVEYETFDILEDEEVRQGLK----T--FSNWPTYPQLYVRGD-LVGGLDIVK   88 (109)
T ss_dssp             HHHHHHHHHTCSCEEEEESSSCHHHHHHHH----H--HHSCCSSCEEECSSS-EEECHHHHH
T ss_pred             HHHHHHHHhcCCCceEEEecccHHHHHHHH----H--hcCCCCCCeEEECCE-EEcCHHHHH
Confidence            55667788888877666 333333332222    2  235678999999999 577775433

>d1z9ha2 c.47.1.5 (A:100-212) Microsomal prostaglandin E synthase-2 {Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Microsomal prostaglandin E synthase-2
species: Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]

Probab=85.75  E-value=0.35  Score=31.41  Aligned_cols=34  Identities=15%  Similarity=0.266  Sum_probs=24.2

Q ss_pred             eEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecc
Q 027910           14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF   55 (217)
Q Consensus        14 v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~   55 (217)
                      |+|+.|....||||....-.|..        .++.++.+...
T Consensus         1 m~i~LY~~~~sP~~~kvr~~L~~--------k~l~~~~~~v~   34 (113)
T d1z9ha2           1 LQLTLYQYKTCPFCSKVRAFLDF--------HALPYQVVEVN   34 (113)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHH--------TTCCEEEEECC
T ss_pred             CEEEEEcCCCChHHHHHHHHHHH--------cCCeeEEeccC
Confidence            57899999999999987765542        24555555543

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=85.51  E-value=0.56  Score=29.52  Aligned_cols=30  Identities=10%  Similarity=-0.054  Sum_probs=24.4

Q ss_pred             eEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910           14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKD   43 (217)
Q Consensus        14 v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~   43 (217)
                      ..+..|+.+-||+|....+.+.++.+++.+
T Consensus        19 ~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~   48 (104)
T d1fb6a_          19 PVMVDFWAPWCGPCKLIAPVIDELAKEYSG   48 (104)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHTTT
T ss_pred             cEEEEEEcCccCCccccCchhHHHHHhhcC
Confidence            345556668999999999999999888764

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=85.04  E-value=0.54  Score=30.26  Aligned_cols=32  Identities=9%  Similarity=-0.051  Sum_probs=26.3

Q ss_pred             cceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD   43 (217)
Q Consensus        12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~   43 (217)
                      .+..|..|+-.-||+|....+.+.++.++|++
T Consensus        24 ~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~   55 (112)
T d1ep7a_          24 HKPIVVDFTATWCGPCKMIAPLFETLSNDYAG   55 (112)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHTTT
T ss_pred             CCeEEEEEEcCCcCCCcccchhhhhhhhcccc
Confidence            34456777789999999999999999888764

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=84.79  E-value=0.72  Score=29.67  Aligned_cols=30  Identities=10%  Similarity=-0.086  Sum_probs=25.2

Q ss_pred             ceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910           13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (217)
Q Consensus        13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~   42 (217)
                      ++.|..|+-+-||.|....+.+.++.++|+
T Consensus        26 k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~   55 (112)
T d1f9ma_          26 KPVVLDMFTQWCGPCKAMAPKYEKLAEEYL   55 (112)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHHCT
T ss_pred             CEEEEEEEcCCCcchHHHHHHHhhhccccc
Confidence            456666677899999999999999998876

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.79  E-value=0.72  Score=31.05  Aligned_cols=33  Identities=12%  Similarity=0.053  Sum_probs=29.1

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD   43 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~   43 (217)
                      ..++.|..|+-.-||.|....+.+.++.++|.+
T Consensus        21 ~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~   53 (137)
T d1qgva_          21 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKN   53 (137)
T ss_dssp             SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEEEECCCCccchhcChHHHHHHHHhhc
Confidence            456888888889999999999999999998874

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.74  E-value=0.55  Score=31.68  Aligned_cols=38  Identities=8%  Similarity=0.026  Sum_probs=26.8

Q ss_pred             HHHHhCCCCeecEEEE--CCeeee--cC----------CCCHHHHHHHHHHH
Q 027910          178 LKKYSANISGVPHFVL--NGKHEL--SG----------GQPPEVYLRAFQVA  215 (217)
Q Consensus       178 ~~a~~~gv~g~Pt~vv--~g~~~~--~G----------~~~~~~l~~~i~~~  215 (217)
                      +.+...+|.|+||+++  +|+...  .|          ..+.++++..|+.+
T Consensus        67 ~la~~~~I~~~PT~~~f~~g~~i~~~~g~~~~~k~~~~l~~~~~~i~~ie~i  118 (137)
T d1qgva_          67 DFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETV  118 (137)
T ss_dssp             TTTTSSCSCSSCEEEEEETTEEEEEECC------CCSCCSCHHHHHHHHHHH
T ss_pred             hhhhhcCeeeEEEEEEEeCCcEEEEEecCCCcceeeeehhhhHHHHHHHHHH
Confidence            3567899999999977  676321  22          24677888888765

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.63  E-value=0.59  Score=30.15  Aligned_cols=31  Identities=10%  Similarity=-0.009  Sum_probs=26.2

Q ss_pred             cceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (217)
Q Consensus        12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~   42 (217)
                      .++.|..|+-.-||.|....+.+.++.+.|+
T Consensus        28 ~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~   58 (114)
T d1xfla_          28 KTLVVVDFTASWCGPCRFIAPFFADLAKKLP   58 (114)
T ss_dssp             TCEEEEEEECTTCHHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEEEcCCCCCccccccchhhhccccc
Confidence            4566777777999999999999999988775

>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: SH3BGR (SH3-binding, glutamic acid-rich protein-like)
domain: SH3BGRL3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.46  E-value=0.87  Score=28.29  Aligned_cols=60  Identities=5%  Similarity=-0.183  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHH
Q 027910          145 KEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVY  208 (217)
Q Consensus       145 ~~~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l  208 (217)
                      -..+..+.+..|++-....++.+   ...++....-...|..-+|-++|||+ .|.|+.....+
T Consensus        21 ~~r~~~lL~~~~I~y~~iDi~~d---~~~~~~~~~~~g~~~~t~Pqifv~~~-~iGg~del~~~   80 (93)
T d1t1va_          21 QSEVTRILDGKRIQYQLVDISQD---NALRDEMRTLAGNPKATPPQIVNGNH-YCGDYELFVEA   80 (93)
T ss_dssp             HHHHHHHHHHTTCCCEEEETTSC---HHHHHHHHHHTTCTTCCSCEEEETTE-EEEEHHHHHHH
T ss_pred             HHHHHHHHHHCCCceEEEEecCc---hhHHHHHHHhccCCCceeEEEEECCE-EEecHHHHHHH
Confidence            35677788889998776633322   12222233223335566899999999 46776544443

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=84.46  E-value=0.27  Score=31.61  Aligned_cols=22  Identities=23%  Similarity=0.537  Sum_probs=18.4

Q ss_pred             EEEEEecccCchhhhhHHHHHH
Q 027910           15 RIDVSSDTVCPWCFVGKRNLDK   36 (217)
Q Consensus        15 ~i~~y~D~~CP~cy~~~~~l~~   36 (217)
                      .|.+|+=..||||..+...|.+
T Consensus        13 ~Vviysk~~Cp~C~~ak~ll~~   34 (105)
T d1ktea_          13 KVVVFIKPTCPFCRKTQELLSQ   34 (105)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHH
T ss_pred             CEEEEECCCCchHHHHHHHHHH
Confidence            4889999999999998776653

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.41  E-value=0.86  Score=29.49  Aligned_cols=38  Identities=11%  Similarity=0.058  Sum_probs=29.5

Q ss_pred             cceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR   50 (217)
Q Consensus        12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~   50 (217)
                      .+..+..|+-+-|+.|....+.+.++.+.+.. .++.+.
T Consensus        27 ~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~-~~v~~~   64 (119)
T d2b5ea4          27 HDLVLAEFFAPWCGHCKNMAPEYVKAAETLVE-KNITLA   64 (119)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TTCEEE
T ss_pred             CCeEEEEEECCccCcccccchhhhhhhhhhcc-cceeee
Confidence            34567778889999999999999999988763 345543

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=83.73  E-value=0.89  Score=28.52  Aligned_cols=31  Identities=10%  Similarity=-0.081  Sum_probs=25.5

Q ss_pred             ceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910           13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKD   43 (217)
Q Consensus        13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~   43 (217)
                      +..|..|+-.-|+.|-...+.+.++.++|++
T Consensus        19 ~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~   49 (103)
T d1syra_          19 ELVIVDFFAEWCGPCKRIAPFYEECSKTYTK   49 (103)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHCTT
T ss_pred             CcEEEEEeCCcccCcccccccchhhhhcccc
Confidence            4556666678999999999999999998863

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.25  E-value=0.35  Score=31.39  Aligned_cols=21  Identities=10%  Similarity=0.048  Sum_probs=15.6

Q ss_pred             EEEEEec-----ccCchhhhhHHHHH
Q 027910           15 RIDVSSD-----TVCPWCFVGKRNLD   35 (217)
Q Consensus        15 ~i~~y~D-----~~CP~cy~~~~~l~   35 (217)
                      .|++|+-     +.||||..+...|.
T Consensus        16 ~VvvF~Kgt~~~p~Cp~c~~ak~lL~   41 (109)
T d1wika_          16 SVMLFMKGNKQEAKCGFSKQILEILN   41 (109)
T ss_dssp             SEEEEESSTTTCCCSSTHHHHHHHHH
T ss_pred             CEEEEeCCCCCCCCChHHHHHHHHHH
Confidence            4566754     88999999877664

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.74  E-value=2.6  Score=27.17  Aligned_cols=33  Identities=21%  Similarity=0.249  Sum_probs=25.5

Q ss_pred             hCCCCeecEEEE--CCe----eeecCCCCHHHHHHHHHH
Q 027910          182 SANISGVPHFVL--NGK----HELSGGQPPEVYLRAFQV  214 (217)
Q Consensus       182 ~~gv~g~Pt~vv--~g~----~~~~G~~~~~~l~~~i~~  214 (217)
                      ...|.|.|||.+  +|+    ....|.++.+.|.+-|++
T Consensus        77 ~~~I~~yPTi~~f~~G~~~~~~~y~G~rt~~~l~~fi~~  115 (122)
T d1g7ea_          77 KLDKESYPVFYLFRDGDFENPVPYSGAVKVGAIQRWLKG  115 (122)
T ss_dssp             TCSSSSCEEEEEEESSCCCCCEEEESCCCHHHHHHHHHT
T ss_pred             cccccCCCeEEEEecCcccCceecCCCCCHHHHHHHHHh
Confidence            456889999966  553    235799999999998874

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.12  E-value=1.1  Score=28.21  Aligned_cols=32  Identities=16%  Similarity=0.053  Sum_probs=26.4

Q ss_pred             cceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD   43 (217)
Q Consensus        12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~   43 (217)
                      .++.|..|+-.-|+.|....+.+.++.++|++
T Consensus        20 ~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~   51 (105)
T d2ifqa1          20 DKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN   51 (105)
T ss_dssp             TSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT
T ss_pred             CCEEEEEEEcCCccchhhhhhhhhhhcccccc
Confidence            45667777778899999999999999888763

>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Bacteriophage T4 [TaxId: 10665]

Probab=81.86  E-value=0.38  Score=29.73  Aligned_cols=26  Identities=19%  Similarity=0.128  Sum_probs=17.3

Q ss_pred             cccCchhhhhHHHHHHHHHhcCCCCceeEEEeec
Q 027910           21 DTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPF   54 (217)
Q Consensus        21 D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~   54 (217)
                      .+.||||-.+...|.+        .++.++...+
T Consensus        11 ~~~C~~C~~AK~lL~~--------~~i~y~~~~i   36 (87)
T d1abaa_          11 IHKCGPCDNAKRLLTV--------KKQPFEFINI   36 (87)
T ss_dssp             TSCCHHHHHHHHHHHH--------TTCCEEEEES
T ss_pred             CCCChhHHHHHHHHHH--------cCCCceeccc
Confidence            4689999998775542        3566665544

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=80.76  E-value=0.84  Score=29.14  Aligned_cols=33  Identities=24%  Similarity=0.386  Sum_probs=25.2

Q ss_pred             hCCCCeecEEEE--CCe----eeecCCCCHHHHHHHHHH
Q 027910          182 SANISGVPHFVL--NGK----HELSGGQPPEVYLRAFQV  214 (217)
Q Consensus       182 ~~gv~g~Pt~vv--~g~----~~~~G~~~~~~l~~~i~~  214 (217)
                      ..+|.|+|||++  +|+    ....|..+.+.|.+.|++
T Consensus        71 ~~~v~~~Pti~~f~~g~~~~~~~~~g~~~~~~l~~fi~~  109 (116)
T d2djja1          71 PDEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAE  109 (116)
T ss_dssp             SSCCSSSSEEEEECSSCTTSCCCCCCCSCHHHHHHHHHH
T ss_pred             cccccCCCEEEEEECCccCceEEecCCCCHHHHHHHHHH
Confidence            568999999965  443    234688899999998875

>d1k0da2 c.47.1.5 (A:109-200) Yeast prion protein ure2p, nitrogen regulation fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Yeast prion protein ure2p, nitrogen regulation fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.66  E-value=0.81  Score=28.39  Aligned_cols=35  Identities=17%  Similarity=0.039  Sum_probs=24.9

Q ss_pred             EEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccC
Q 027910           15 RIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLN   57 (217)
Q Consensus        15 ~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~   57 (217)
                      .++.|..+.||+|+...-.|.    +    .++.++++.+.+.
T Consensus         5 ~~tLY~~~~sp~~~kV~~~L~----e----~gi~ye~~~v~~~   39 (92)
T d1k0da2           5 GYTLFSHRSAPNGFKVAIVLS----E----LGFHYNTIFLDFN   39 (92)
T ss_dssp             SEEEEECTTCHHHHHHHHHHH----H----TTCCEEEEECCTT
T ss_pred             ceEEeeCCCCccHHHHHHHHH----H----cCCCCEEEEeecc
Confidence            478899999999998665443    2    3567777776654

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.34  E-value=1  Score=29.02  Aligned_cols=31  Identities=16%  Similarity=0.045  Sum_probs=25.9

Q ss_pred             ceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910           13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKD   43 (217)
Q Consensus        13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~   43 (217)
                      +..+..|+-+-||+|....+.+.++.+.+..
T Consensus        25 k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~   55 (120)
T d1meka_          25 KYLLVEFYAPWCGHCKALAPEYAKAAGKLKA   55 (120)
T ss_dssp             SEEEEEEECSSCSTTSTTHHHHHHHHHTTTT
T ss_pred             CcEEEEEECCCcCCccccchhhhhhcccccc
Confidence            5667777789999999999999998887753

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.24  E-value=0.66  Score=30.98  Aligned_cols=35  Identities=23%  Similarity=0.335  Sum_probs=26.9

Q ss_pred             HHhCCCCeecEEEE--CCe----eeecCCCCHHHHHHHHHH
Q 027910          180 KYSANISGVPHFVL--NGK----HELSGGQPPEVYLRAFQV  214 (217)
Q Consensus       180 a~~~gv~g~Pt~vv--~g~----~~~~G~~~~~~l~~~i~~  214 (217)
                      +...+|.|+|||++  +|+    ....|..+.+.|.+.|++
T Consensus        78 ~~~~~v~~~Ptl~~f~~g~~~~~~~y~G~~t~~~l~~fi~~  118 (140)
T d2b5ea1          78 VRGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKE  118 (140)
T ss_dssp             CSSCCCSSSSEEEEECCTTSCCCCBCCSCCCHHHHHHHHHH
T ss_pred             ccccccccCCeEEEEECCEEcceeEeCCCCCHHHHHHHHHH
Confidence            45789999999987  443    224688899999988875

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.08  E-value=0.81  Score=30.49  Aligned_cols=30  Identities=7%  Similarity=-0.038  Sum_probs=25.2

Q ss_pred             ceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910           13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (217)
Q Consensus        13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~   42 (217)
                      +..+..|+.+-|++|....+.+.++.+.|.
T Consensus        31 k~vlV~F~a~wC~~C~~~~p~~~~la~~~~   60 (140)
T d2b5ea1          31 KDVLVLYYAPWCGHCKRLAPTYQELADTYA   60 (140)
T ss_dssp             CCEEEEEECTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEeccCcccchhHHHHHHHHHHHh
Confidence            446667888999999999999999887765

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=80.06  E-value=1.3  Score=28.27  Aligned_cols=32  Identities=9%  Similarity=0.075  Sum_probs=26.4

Q ss_pred             CcceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (217)
Q Consensus        11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~   42 (217)
                      ..++.|..|+-.-||.|-...+.+.++.++|+
T Consensus        25 ~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~   56 (113)
T d1ti3a_          25 SQKLIVVDFTASWCPPCKMIAPIFAELAKKFP   56 (113)
T ss_dssp             SSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS
T ss_pred             CCCEEEEEEEcCccccchhhhhhhhhhhccCC
Confidence            34566677777999999999999999988775