Citrus Sinensis ID: 027924

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------
Protein Sequence
MATVTESSEDEKPNVAAASDTVFKSQSLEDGNPWIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGMLIL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
matvtessedekpnvaaasdtvfksqsledgnpwiDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHvaashpfitaggaiglgsfllkrprhflYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGMLIL
Flexible Loop (DISEMBL)
matvtessedekpnvaaasdtvfksqsledgnpwIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASeesllsradtkvKQLRQSIDrlkaeseklekvalvaedelirgrtklrqagkqiqgvinsaykIERQAAGMLIL
Low Complexity Region (SEG)
MATVTESSEDEKPNVAAASDTVFKSQSLEDGNPWIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGMLIL
Disordered region (IsUnstruct)
*******************************NPWIDNAVQQVMIYRKIVEESIDSAI*********TRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASE******************************VALVAEDELIRGRTKLRQAGKQIQGVINSAYKI**********
Disordered Region (DISOPRED)
*******************************NPWIDNAVQQVMIYRKIVEESI*S**********************TLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESL******************************V***EL**************************QAAGMLIL
Disordered Region (DISEMBL)
****************AASDTVFKSQSLEDGNPWIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGMLIL
Disordered Region (DISPRO)
*************************QSLEDGNPWIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGMLIL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATVTESSEDEKPNVAAASDTVFKSQSLEDGNPWIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLIRGRTKLRQAGKQIQGVINSAYKIERQAAGMLIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
255541158	267	conserved hypothetical protein [Ricinus	0.986	0.801	0.627	6e-71
224067612	270	predicted protein [Populus trichocarpa]	0.986	0.792	0.609	9e-68
297828223	272	hypothetical protein ARALYDRAFT_903941 [	0.875	0.698	0.605	1e-63
225453510	260	PREDICTED: uncharacterized protein LOC10	0.880	0.734	0.645	1e-63
18406697	272	uncharacterized protein [Arabidopsis tha	0.866	0.691	0.606	2e-63
388494290	264	unknown [Medicago truncatula]	0.981	0.806	0.573	3e-62
388518061	262	unknown [Lotus japonicus]	0.986	0.816	0.567	6e-62
388502614	262	unknown [Lotus japonicus]	0.986	0.816	0.562	7e-61
356539160	258	PREDICTED: uncharacterized protein LOC10	0.972	0.817	0.546	2e-59
449445698	284	PREDICTED: uncharacterized protein LOC10	0.875	0.669	0.551	3e-57

>gi|255541158|ref|XP_002511643.1| conserved hypothetical protein [Ricinus communis] gi|223548823|gb|EEF50312.1| conserved hypothetical protein [Ricinus communis]

 Score =  272 bits (696), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 138/220 (62%), Positives = 165/220 (75%), Gaps = 6/220 (2%)

Query: 1   MATVTE--SSEDEKPNVAAASD----TVFKSQSLEDGNPWIDNAVQQVMIYRKIVEESID 54
           M T+ E  S  +EKP+  A S      + K ++LE+  PWID A+QQ + Y+K +EE++D
Sbjct: 1   MTTIAEESSPSEEKPSPPAPSHFPEAEMIKYKTLEEVTPWIDYAIQQALTYQKTIEEAVD 60

Query: 55  SAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFIT 114
            A +A RSR S+ R T+S HF QT+D LQDVKSE  AYED   GKVK+G++VAASHP IT
Sbjct: 61  DATKALRSRFSEIRSTSSAHFNQTMDSLQDVKSELGAYEDTLFGKVKDGVNVAASHPLIT 120

Query: 115 AGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEK 174
            G A+GLG  L KRPR FLYYNTLRLF SEE+LLS+AD KVK+L+QSI  L+AESEKLEK
Sbjct: 121 GGVAVGLGFVLFKRPRRFLYYNTLRLFVSEEALLSKADAKVKELQQSISLLRAESEKLEK 180

Query: 175 VALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGM 214
            A  AE ELIRGRTKLRQAGKQI GVI S YKIERQAAG+
Sbjct: 181 RASSAEGELIRGRTKLRQAGKQICGVITSTYKIERQAAGL 220

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067612|ref|XP_002302514.1| predicted protein [Populus trichocarpa] gi|222844240|gb|EEE81787.1| predicted protein [Populus trichocarpa]

 Score =  262 bits (669), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 136/223 (60%), Positives = 167/223 (74%), Gaps = 9/223 (4%)

Query: 1   MATVTES-SEDEKPNV------AAASD--TVFKSQSLEDGNPWIDNAVQQVMIYRKIVEE 51
           M T  ES S +EKP+        A +D  ++ KS++LE+  PWIDNA+QQ +IY+K +++
Sbjct: 1   MPTDAESPSPEEKPSTHLPPRPTAETDLTSILKSKALEETAPWIDNALQQALIYQKTIQD 60

Query: 52  SIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHP 111
           S+D AIE+S+SR S+   T+  HF QT+D LQ   SE   YED   GK KEGI+VAASHP
Sbjct: 61  SLDIAIESSKSRFSEIITTSQAHFSQTIDSLQYFTSEIGVYEDKLFGKAKEGINVAASHP 120

Query: 112 FITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEK 171
            IT+  A+GLG  +LKRPR  LYY TLRLF SEE+LLS+AD KVK+LRQSI  LKAESEK
Sbjct: 121 LITSAVAVGLGFVVLKRPRRILYYKTLRLFTSEEALLSQADAKVKELRQSISLLKAESEK 180

Query: 172 LEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGM 214
           LE+ A +AE+ELIRGRTKLRQAGKQIQGVI SAYKIERQA G+
Sbjct: 181 LERRASLAEEELIRGRTKLRQAGKQIQGVIRSAYKIERQATGL 223

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828223|ref|XP_002881994.1| hypothetical protein ARALYDRAFT_903941 [Arabidopsis lyrata subsp. lyrata] gi|297327833|gb|EFH58253.1| hypothetical protein ARALYDRAFT_903941 [Arabidopsis lyrata subsp. lyrata]

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 115/190 (60%), Positives = 154/190 (81%)

Query: 25  SQSLEDGNPWIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQD 84
           + ++E+   WID+A++Q ++Y+K + E++DS I+AS++RLSQ R T+  H  QT+D L+D
Sbjct: 36  TTTVENAASWIDDALRQALVYQKTISETVDSTIDASKARLSQIRDTSVAHTSQTIDSLRD 95

Query: 85  VKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASE 144
           + SEY  YE    GK+K+G++VAASHP I+   A G+G F LK+ R F+YYNT+R+F SE
Sbjct: 96  IASEYNVYEQMVFGKIKDGVNVAASHPLISGTLAFGVGIFALKKTRKFVYYNTVRMFVSE 155

Query: 145 ESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSA 204
           E+LLSRAD KVK+LRQS+DRLKAESEKLE+VA VAE+ELIRGR KLRQAGKQI+G I+SA
Sbjct: 156 EALLSRADLKVKELRQSMDRLKAESEKLERVATVAEEELIRGRMKLRQAGKQIRGAISSA 215

Query: 205 YKIERQAAGM 214
           YKIE+QAAG+
Sbjct: 216 YKIEKQAAGL 225

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453510|ref|XP_002277999.1| PREDICTED: uncharacterized protein LOC100266783 [Vitis vinifera] gi|297734546|emb|CBI16597.3| unnamed protein product [Vitis vinifera]

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 124/192 (64%), Positives = 150/192 (78%), Gaps = 1/192 (0%)

Query: 24  KSQSLEDG-NPWIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYL 82
           K +SLE+  + WI+  V Q  +  K ++++++S IEAS SR SQ   T+S H QQT++ L
Sbjct: 22  KPKSLEEAASSWIEYGVNQAQLLHKTLDDTVNSFIEASGSRFSQILSTSSAHLQQTIESL 81

Query: 83  QDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFA 142
           +DVKSEY  YED AVGK+KEGI VAAS+P IT+G  +GLG  LLKRPRHFLYYNTLRL  
Sbjct: 82  KDVKSEYDVYEDLAVGKIKEGILVAASNPLITSGVCVGLGCLLLKRPRHFLYYNTLRLLV 141

Query: 143 SEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVIN 202
           SEES+++RAD KV +LR+SID LKAESEKLEK AL AEDE+ RGRTKLRQAG QIQ VI 
Sbjct: 142 SEESMVARADAKVNELRKSIDLLKAESEKLEKRALQAEDEMKRGRTKLRQAGNQIQSVIR 201

Query: 203 SAYKIERQAAGM 214
           SAYKIERQA G+
Sbjct: 202 SAYKIERQARGL 213

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18406697|ref|NP_566034.1| uncharacterized protein [Arabidopsis thaliana] gi|15010568|gb|AAK73943.1| At2g45060/T14P1.13 [Arabidopsis thaliana] gi|21553572|gb|AAM62665.1| unknown [Arabidopsis thaliana] gi|23505975|gb|AAN28847.1| At2g45060/T14P1.13 [Arabidopsis thaliana] gi|330255407|gb|AEC10501.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 114/188 (60%), Positives = 152/188 (80%)

Query: 27  SLEDGNPWIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVK 86
           ++E+   WID+A++Q ++Y+K + E++DS I+AS++RLSQ R T+  H  QT+D L+D+ 
Sbjct: 38  TVENAASWIDDALRQALVYQKTITETVDSTIDASKARLSQIRDTSVAHTSQTIDSLRDIA 97

Query: 87  SEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEES 146
           SEY  YE    GK+K+G++VAASHP I+   A G+G F LK+ R F+YYNT+R+F SEE+
Sbjct: 98  SEYNVYEQMVFGKIKDGVNVAASHPLISGTLAFGVGIFALKKTRRFVYYNTVRMFVSEEA 157

Query: 147 LLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYK 206
           LLSRAD KVK+LRQS+DRLKAESEKLE+VA VAE+E IRGR KLRQAGKQI+G I+SAYK
Sbjct: 158 LLSRADLKVKELRQSMDRLKAESEKLERVATVAEEEFIRGRMKLRQAGKQIRGAISSAYK 217

Query: 207 IERQAAGM 214
           IE+QAAG+
Sbjct: 218 IEKQAAGL 225

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494290|gb|AFK35211.1| unknown [Medicago truncatula]

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 125/218 (57%), Positives = 156/218 (71%), Gaps = 5/218 (2%)

Query: 1   MATVTESSEDEKPNVAAAS----DTVFKSQSLEDGNPWIDNAVQQVMIYRKIVEESIDSA 56
           MATV ESSE E P    A      T    Q+L D  P+ID AV  V+ Y+K   +++DSA
Sbjct: 1   MATVAESSEPEAPPSTPAPTVNQSTTTNPQTL-DVKPFIDYAVGHVLYYQKTFNDAVDSA 59

Query: 57  IEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAG 116
           I+AS SR SQ R T+S HF Q+LDYL D KS+Y AYE+   GK+KEG+ VAASHP IT+G
Sbjct: 60  IDASTSRFSQIRSTSSAHFHQSLDYLDDFKSQYNAYEELLFGKIKEGVLVAASHPVITSG 119

Query: 117 GAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVA 176
               +G  +LKRPR FLYYN  RLF SEESL+S+A  +VK+LRQSID LK+E E++EK A
Sbjct: 120 ATASMGLLVLKRPRRFLYYNMQRLFVSEESLVSKASEEVKELRQSIDLLKSEVERMEKSA 179

Query: 177 LVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGM 214
           L AE++ + G+TKLRQAGKQI+ VI SAYKIER+A G+
Sbjct: 180 LHAEEQFLHGKTKLRQAGKQIRNVIQSAYKIERRAGGL 217

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518061|gb|AFK47092.1| unknown [Lotus japonicus]

 Score =  242 bits (618), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 122/215 (56%), Positives = 156/215 (72%), Gaps = 1/215 (0%)

Query: 1   MATVTESSEDEKPNVAAAS-DTVFKSQSLEDGNPWIDNAVQQVMIYRKIVEESIDSAIEA 59
           MATV ESSE + P  A  +  T     +L+   P+ID AV Q ++Y+K   ++++SAI+A
Sbjct: 1   MATVVESSESDTPPPAPGNHSTTSNRPTLDPTTPFIDYAVGQALLYQKAFNDAVESAIDA 60

Query: 60  SRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAI 119
           S+SR SQ R T+S HFQQTL  L D KS+Y AYED   GK+KEG+ VA+SHP IT G A 
Sbjct: 61  SKSRFSQIRSTSSAHFQQTLYALDDFKSQYNAYEDLLFGKIKEGVLVASSHPVITCGAAA 120

Query: 120 GLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVA 179
             G  + KRPR  LYYNT+RLF +EE+L+SRA  +VK+LR+SID LKAE EK EK AL A
Sbjct: 121 ATGLMVFKRPRRILYYNTMRLFLNEETLISRASAEVKELRKSIDLLKAEGEKWEKSALHA 180

Query: 180 EDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGM 214
           E++ + GRTKLRQAGKQI+ VI+SAYKIER+A G+
Sbjct: 181 EEQFLHGRTKLRQAGKQIRNVIDSAYKIERRAGGL 215

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502614|gb|AFK39373.1| unknown [Lotus japonicus]

 Score =  239 bits (609), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 121/215 (56%), Positives = 155/215 (72%), Gaps = 1/215 (0%)

Query: 1   MATVTESSEDEKPNVAAAS-DTVFKSQSLEDGNPWIDNAVQQVMIYRKIVEESIDSAIEA 59
           MATV ESSE + P  A  +  T     +L+   P+ID AV Q ++Y+K   ++++SAI+A
Sbjct: 1   MATVVESSESDTPPPAPGNHSTTSNRPTLDPTTPFIDYAVGQALLYQKAFNDAVESAIDA 60

Query: 60  SRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAI 119
           S+SR SQ R T+S HFQQTL  L D KS+Y AYED   GK+KEG+ VA+SHP IT G A 
Sbjct: 61  SKSRFSQIRSTSSAHFQQTLYALDDFKSQYNAYEDLLFGKIKEGVLVASSHPVITCGAAA 120

Query: 120 GLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVA 179
             G  + KRPR  LYYNT+RLF +EE+L+SRA  +VK+LR+SID LKAE EK EK AL A
Sbjct: 121 ATGLMVFKRPRRILYYNTMRLFLNEETLISRASAEVKELRKSIDLLKAEGEKWEKSALHA 180

Query: 180 EDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGM 214
           E++ + GRTKL QAGKQI+ VI+SAYKIER+A G+
Sbjct: 181 EEQFLHGRTKLGQAGKQIRNVIDSAYKIERRAGGL 215

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539160|ref|XP_003538068.1| PREDICTED: uncharacterized protein LOC100804339 [Glycine max]

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 117/214 (54%), Positives = 151/214 (70%), Gaps = 3/214 (1%)

Query: 1   MATVTESSEDEKPNVAAASDTVFKSQSLEDGNPWIDNAVQQVMIYRKIVEESIDSAIEAS 60
           MA V ES E +  N ++ ++     Q+L +  P++D A+ Q  +Y K   +++DS I+ +
Sbjct: 1   MAMVAESPESDSDNNSSKTNN---PQTLNETAPFLDYALAQAQLYHKAFNDAVDSTIDTA 57

Query: 61  RSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIG 120
           +SR SQ R T+S HF QTLD L D+KS+Y AYE    GK+KEG+ VAASHP IT G    
Sbjct: 58  KSRFSQIRSTSSAHFHQTLDSLDDLKSQYTAYEGLLFGKIKEGVVVAASHPVITCGATAS 117

Query: 121 LGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAE 180
           LG  +LKRPR  LYYNTLRLF SEES++SRA  +VK+LRQSI+ LKAE EKLEK AL AE
Sbjct: 118 LGLLVLKRPRRVLYYNTLRLFVSEESMISRAHAEVKELRQSIELLKAEGEKLEKSALHAE 177

Query: 181 DELIRGRTKLRQAGKQIQGVINSAYKIERQAAGM 214
           ++ + GRTKLR AGKQI+ VI SAYKIE +A G+
Sbjct: 178 EQFLHGRTKLRHAGKQIRNVIQSAYKIEIRAGGL 211

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445698|ref|XP_004140609.1| PREDICTED: uncharacterized protein LOC101214960 [Cucumis sativus]

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 117/212 (55%), Positives = 150/212 (70%), Gaps = 22/212 (10%)

Query: 24  KSQSLED-GNPWIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYL 82
           K QSLED   PW + A QQ ++Y++ ++ S++SAIE S+SRLSQ R T+  HFQ+ +D  
Sbjct: 27  KPQSLEDLAKPWAEYAAQQALLYQRAIDHSLESAIEVSKSRLSQIRSTSFPHFQKAVDSF 86

Query: 83  QDVKSEYAAYEDAAVGKVKEGIH--------------------VAASHPFITAGGAIGLG 122
            + KSE AAYE+   GK++ G+                     VAASHP I+ G A G+G
Sbjct: 87  WEAKSELAAYENLVFGKIR-GLFLIYHCDGKLTLPSFVFSFSFVAASHPLISCGVATGMG 145

Query: 123 SFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDE 182
             + K+PR+FLYY T+RLF +EESLLS+AD KVK+LRQSIDR+K ESE+LEK  L AEDE
Sbjct: 146 FLVFKKPRNFLYYKTIRLFVNEESLLSKADAKVKELRQSIDRIKVESERLEKRTLQAEDE 205

Query: 183 LIRGRTKLRQAGKQIQGVINSAYKIERQAAGM 214
           LIRGRTKLRQAGKQI+GVI SA+KIER+A G+
Sbjct: 206 LIRGRTKLRQAGKQIEGVIQSAHKIERKARGL 237

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
TAIR|locus:2055578	272	AT2G45060 "AT2G45060" [Arabido	0.866	0.691	0.606	2.5e-58
TAIR|locus:2131473	263	AT4G26410 "AT4G26410" [Arabido	0.811	0.669	0.329	1.3e-20

TAIR|locus:2055578 AT2G45060 "AT2G45060" [Arabidopsis thaliana (taxid:3702)]

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 114/188 (60%), Positives = 152/188 (80%)

Query:    27 SLEDGNPWIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVK 86
             ++E+   WID+A++Q ++Y+K + E++DS I+AS++RLSQ R T+  H  QT+D L+D+ 
Sbjct:    38 TVENAASWIDDALRQALVYQKTITETVDSTIDASKARLSQIRDTSVAHTSQTIDSLRDIA 97

Query:    87 SEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEES 146
             SEY  YE    GK+K+G++VAASHP I+   A G+G F LK+ R F+YYNT+R+F SEE+
Sbjct:    98 SEYNVYEQMVFGKIKDGVNVAASHPLISGTLAFGVGIFALKKTRRFVYYNTVRMFVSEEA 157

Query:   147 LLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYK 206
             LLSRAD KVK+LRQS+DRLKAESEKLE+VA VAE+E IRGR KLRQAGKQI+G I+SAYK
Sbjct:   158 LLSRADLKVKELRQSMDRLKAESEKLERVATVAEEEFIRGRMKLRQAGKQIRGAISSAYK 217

Query:   207 IERQAAGM 214
             IE+QAAG+
Sbjct:   218 IEKQAAGL 225

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

TAIR|locus:2131473 AT4G26410 "AT4G26410" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 60/182 (32%), Positives = 101/182 (55%)

Query:    35 IDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYED 94
             I+ A + V   ++ V+ES D+A+ ++RS     R  ++  F+   D++    ++Y  YE+
Sbjct:    41 IEGAEKWVGDLQRTVKESKDTAMRSARS----LRENSTSQFRSIQDFIPHALTQYKTYEN 96

Query:    95 AAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTK 154
             A   KV + +  A  HP    G  +     L++ PR FL+ NTL  F SEE+   +A+  
Sbjct:    97 AFFSKVTDELIYAKEHPAAAIGIGVAASLVLMRGPRRFLFRNTLGRFQSEEAQFLKAEKH 156

Query:   155 VKQLRQSIDRLKAESEKL-EKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAG 213
             V++L  S+D +K ES KL E+ AL AE ++ RG ++L  +G  I  +  S +K E +AA 
Sbjct:   157 VQELNMSVDLMKKESRKLLERTAL-AEKDMKRGLSELMNSGNDIHRLAKSVHKAECEAAD 215

Query:   214 ML 215
             ++
Sbjct:   216 LM 217


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.129   0.340    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      217       217   0.00090  112 3  10 23  0.41    33
                                                     32  0.39    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  586 (62 KB)
  Total size of DFA:  190 KB (2110 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  31.13u 0.08s 31.21t   Elapsed:  00:00:02
  Total cpu time:  31.13u 0.08s 31.21t   Elapsed:  00:00:02
  Start:  Thu May  9 17:23:13 2013   End:  Thu May  9 17:23:15 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00021319 hypothetical protein (270 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	217
PF05957	94	DUF883: Bacterial protein of unknown function (DUF	97.81
PRK10404	101	hypothetical protein; Provisional	96.8
PRK10132	108	hypothetical protein; Provisional	95.73
COG4575	104	ElaB Uncharacterized conserved protein [Function u	94.69
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	90.53
PF09769	158	ApoO: Apolipoprotein O; InterPro: IPR019166 Apolip	87.41
PRK10132	108	hypothetical protein; Provisional	86.95
PRK11637	428	AmiB activator; Provisional	85.28
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	83.61
PRK04654	214	sec-independent translocase; Provisional	83.13
PRK08475	167	F0F1 ATP synthase subunit B; Validated	81.26

>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD

Probab=97.81  E-value=0.00047  Score=51.86  Aligned_cols=83  Identities=18%  Similarity=0.223  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhChhhHHHHHH
Q 027924           40 QQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAI  119 (217)
Q Consensus        40 ~qa~~~qk~~~es~d~ai~aa~s~~s~~~~~ss~h~~~~~d~l~~~~seY~~yEd~~f~kiKegv~~A~shP~~a~g~a~  119 (217)
                      ++..-+..-+.+-++++-+.+.....++++.-..++.++.+.+.++..+.+.--.....   ..-..+++||+-+.|+|+
T Consensus         5 ~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~V~e~P~~svgiAa   81 (94)
T PF05957_consen    5 AELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQAREAAE---QTEDYVRENPWQSVGIAA   81 (94)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHChHHHHHHHH
Confidence            34445666777777777777788888888888888888777777666554333322222   234567899999999999


Q ss_pred             HHHHhh
Q 027924          120 GLGSFL  125 (217)
Q Consensus       120 ~aglll  125 (217)
                      ++|||+
T Consensus        82 gvG~ll   87 (94)
T PF05957_consen   82 GVGFLL   87 (94)
T ss_pred             HHHHHH
Confidence            999986

>PRK10404 hypothetical protein; Provisional

Probab=96.80  E-value=0.026  Score=44.43  Aligned_cols=81  Identities=12%  Similarity=0.201  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhHHHhhhChhhHHHHHH
Q 027924           41 QVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAA-YEDAAVGKVKEGIHVAASHPFITAGGAI  119 (217)
Q Consensus        41 qa~~~qk~~~es~d~ai~aa~s~~s~~~~~ss~h~~~~~d~l~~~~seY~~-yEd~~f~kiKegv~~A~shP~~a~g~a~  119 (217)
                      .-..+-.++.+-..++-+.+.....++|+....++..+++.|.+....+.. +.+    .....-.++++||+-++|+++
T Consensus        13 dl~~L~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~----aa~~td~yV~e~Pw~avGiaa   88 (101)
T PRK10404         13 DLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQ----AVYRADDYVHEKPWQGIGVGA   88 (101)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHhCcHHHHHHHH
Confidence            334455555555555666677777779988888888888777766654322 211    122234667889999999999


Q ss_pred             HHHHhh
Q 027924          120 GLGSFL  125 (217)
Q Consensus       120 ~aglll  125 (217)
                      ++|||+
T Consensus        89 gvGlll   94 (101)
T PRK10404         89 AVGLVL   94 (101)
T ss_pred             HHHHHH
Confidence            999875

>PRK10132 hypothetical protein; Provisional

Probab=95.73  E-value=0.23  Score=39.70  Aligned_cols=63  Identities=14%  Similarity=0.214  Sum_probs=37.3

Q ss_pred             HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----HHHhhhChhhHHHHHHHHHHhh
Q 027924           55 SAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEG----IHVAASHPFITAGGAIGLGSFL  125 (217)
Q Consensus        55 ~ai~aa~s~~s~~~~~ss~h~~~~~d~l~~~~seY~~yEd~~f~kiKeg----v~~A~shP~~a~g~a~~aglll  125 (217)
                      ++-+.+.....++|+.-...+.++.+.|.+...-        ..+.|+.    -..+++||.-++|+++++|||+
T Consensus        34 ~~~~~~~~~~~~lR~r~~~~L~~ar~~l~~~~~~--------~~~~~~a~~~~~~~V~~~Pw~svgiaagvG~ll  100 (108)
T PRK10132         34 SWGSDAKGEAEAARRKAQALLKETRARMHGRTRV--------QQAARDAVGCADTFVRERPWCSVGTAAAVGIFI  100 (108)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHH--------HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            3333444444556666666666666665543331        1222333    3456789999999999888875

>COG4575 ElaB Uncharacterized conserved protein [Function unknown]

Probab=94.69  E-value=0.46  Score=38.39  Aligned_cols=83  Identities=22%  Similarity=0.282  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH----HhhhCh
Q 027924           36 DNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIH----VAASHP  111 (217)
Q Consensus        36 ~~a~~qa~~~qk~~~es~d~ai~aa~s~~s~~~~~ss~h~~~~~d~l~~~~seY~~yEd~~f~kiKegv~----~A~shP  111 (217)
                      +..+.--+.|--++++-.++.=..|.-...+||..--+-+..+++-+.+..       |.+....|+.+.    ++.+||
T Consensus        11 ~~l~~el~~L~d~lEevL~ssg~~a~~e~~~lR~r~~~~Lk~~r~rl~~~~-------d~v~~~sk~a~~~tD~yV~e~P   83 (104)
T COG4575          11 DQLLAELQELLDTLEEVLKSSGSLAGDEAEELRSKAESALKEARDRLGDTG-------DAVVQRSKAAADATDDYVRENP   83 (104)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHHHHHHcCC
Confidence            444444444445555555555555666667788776666666666666555       555556666654    568899


Q ss_pred             hhHHHHHHHHHHhh
Q 027924          112 FITAGGAIGLGSFL  125 (217)
Q Consensus       112 ~~a~g~a~~aglll  125 (217)
                      .=++|+++++|||+
T Consensus        84 Wq~VGvaAaVGlll   97 (104)
T COG4575          84 WQGVGVAAAVGLLL   97 (104)
T ss_pred             chHHHHHHHHHHHH
Confidence            99999999999875

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=90.53  E-value=6.9  Score=32.17  Aligned_cols=63  Identities=25%  Similarity=0.313  Sum_probs=29.5

Q ss_pred             hhhHHHHHHHHHHhhccCchhHHHHHhh---------------hhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924          111 PFITAGGAIGLGSFLLKRPRHFLYYNTL---------------RLFASEESLLSRADTKVKQLRQSIDRLKAESEKLE  173 (217)
Q Consensus       111 P~~a~g~a~~aglllLr~PRRfLyr~Tl---------------grF~SEEaLl~~ae~~V~eLr~svdllk~Es~KL~  173 (217)
                      +.+.+++.++.|++++-.-=.++.....               +.....+..++..+++..++...+..+.++..++.
T Consensus        38 s~~lg~~~lAlg~vL~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~  115 (191)
T PF04156_consen   38 SFILGIALLALGVVLLSLGLLCLLSKRPVQSVRPQQIEEPRLQGELSELQQQLQQLQEELDQLQERIQELESELEKLK  115 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccccccchHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555566666554444433322               23333344444444444444444444444444443

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF09769 ApoO: Apolipoprotein O; InterPro: IPR019166 Apolipoproteins are proteins that binds to lipids

Probab=87.41  E-value=1.4  Score=36.01  Aligned_cols=73  Identities=25%  Similarity=0.272  Sum_probs=52.1

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhCh------hhHHHHHHHHHHhhccC---chhHH
Q 027924           63 RLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHP------FITAGGAIGLGSFLLKR---PRHFL  133 (217)
Q Consensus        63 ~~s~~~~~ss~h~~~~~d~l~~~~seY~~yEd~~f~kiKegv~~A~shP------~~a~g~a~~aglllLr~---PRRfL  133 (217)
                      .++++|..-..++..+++.++.+++.|...|+.+=+.++.    .+..|      .+.+|+++.+|++|-|+   ++||+
T Consensus        46 ~i~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----L~~~~~~llP~~~~I~vaglaGsIlar~r~~~~R~~  121 (158)
T PF09769_consen   46 QIRKAREFLQPYYSWAQDELNTVKSKYYNAERSVTSTIAS----LHPPPEELLPGLGYIGVAGLAGSILARRRGIFKRFL  121 (158)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcCCCcccCcceeeeehhhhheeeeeccCcchhhhH
Confidence            3445777778889999999999999999999876666643    33333      34567778888888873   55666


Q ss_pred             HHHhhh
Q 027924          134 YYNTLR  139 (217)
Q Consensus       134 yr~Tlg  139 (217)
                      |=-.+|
T Consensus       122 ~P~~~g  127 (158)
T PF09769_consen  122 YPLAFG  127 (158)
T ss_pred             HHHHHH
Confidence            655554

Members of this family promote cholesterol efflux from macrophage cells. They are present in various lipoprotein complexes, including HDL, LDL and VLDL. Apolipoprotein O is a 198 amino acids protein that contains a 23 amino acids long signal peptide. The apoprotein is secreted by a microsomal triglyceride transfer protein (MTTP)-dependent mechanism, probably as a VLDL-associated protein that is subsequently transferred to HDL. Apolipoprotein O is the first chondroitine sulphate chain containing apolipoprotein [].

>PRK10132 hypothetical protein; Provisional

Probab=86.95  E-value=7.5  Score=31.08  Aligned_cols=77  Identities=13%  Similarity=0.076  Sum_probs=55.3

Q ss_pred             HHHHHHHhHHHH---HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhChhhHHHHHHHH
Q 027924           45 YRKIVEESIDSA---IEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGL  121 (217)
Q Consensus        45 ~qk~~~es~d~a---i~aa~s~~s~~~~~ss~h~~~~~d~l~~~~seY~~yEd~~f~kiKegv~~A~shP~~a~g~a~~a  121 (217)
                      +...+.++.+.+   ++.+|.+.......+...+..+.+..+..+.-....++.+=.++=.+|       +|++|+++.+
T Consensus        28 le~ll~~~~~~~~~~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~Pw~sv-------giaagvG~ll  100 (108)
T PRK10132         28 LESVLKSWGSDAKGEAEAARRKAQALLKETRARMHGRTRVQQAARDAVGCADTFVRERPWCSV-------GTAAAVGIFI  100 (108)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCcHHHH-------HHHHHHHHHH
Confidence            333344444333   588888888888888888888777666667767777777767774444       4789999999


Q ss_pred             HHhhccC
Q 027924          122 GSFLLKR  128 (217)
Q Consensus       122 glllLr~  128 (217)
                      |+|+-||
T Consensus       101 G~Ll~RR  107 (108)
T PRK10132        101 GALLSLR  107 (108)
T ss_pred             HHHHhcc
Confidence            9998764

>PRK11637 AmiB activator; Provisional

Probab=85.28  E-value=21  Score=33.38  Aligned_cols=61  Identities=8%  Similarity=0.175  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 027924          147 LLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKI  207 (217)
Q Consensus       147 Ll~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG~qIq~l~~s~yK~  207 (217)
                      -++..++++..+...++.+..++..+.+.....++++..=..+|...-.++...++.+|+-
T Consensus        76 ~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~~  136 (428)
T PRK11637         76 QLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFRQ  136 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3444455555555556666666666666666666667777777777777777777777763

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=83.61  E-value=20  Score=31.37  Aligned_cols=90  Identities=13%  Similarity=0.182  Sum_probs=61.4

Q ss_pred             hhccCchhHHH---------HHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 027924          124 FLLKRPRHFLY---------YNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAG  194 (217)
Q Consensus       124 llLr~PRRfLy---------r~TlgrF~SEEaLl~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG  194 (217)
                      ..+|+|.+++|         +.-.+.+..-...+...+.++..|.+.++.+.....+....+.....+..+-+..-..-.
T Consensus        14 ~~~~~~~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~   93 (264)
T PF06008_consen   14 GAWPAPYKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLE   93 (264)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35689999998         223333444455688888888888888888888888876666666666555555555666


Q ss_pred             HHHHHHHHHHHHHHHhhhc
Q 027924          195 KQIQGVINSAYKIERQAAG  213 (217)
Q Consensus       195 ~qIq~l~~s~yK~E~~Aag  213 (217)
                      ..|+.+...|-.+-.++.+
T Consensus        94 ~~i~~l~~~i~~l~~~~~~  112 (264)
T PF06008_consen   94 QFIQNLQDNIQELIEQVES  112 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            6677777766666655544

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PRK04654 sec-independent translocase; Provisional

Probab=83.13  E-value=15  Score=33.13  Aligned_cols=79  Identities=11%  Similarity=0.172  Sum_probs=46.4

Q ss_pred             HhhccCchhHH-HHHh----hhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 027924          123 SFLLKRPRHFL-YYNT----LRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQI  197 (217)
Q Consensus       123 lllLr~PRRfL-yr~T----lgrF~SEEaLl~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG~qI  197 (217)
                      .|++-||-|+= +=++    +|+|++   .++.....+++= ..++.++++.+++.+....++.+++.+...|+++++.+
T Consensus        16 ALlV~GPerLPe~aRtlGk~irk~R~---~~~~vk~El~~E-l~~~ELrk~l~~~~~~i~~~~~~lk~~~~el~q~a~~~   91 (214)
T PRK04654         16 ALVVLGPERLPKAARFAGLWVRRARM---QWDSVKQELERE-LEAEELKRSLQDVQASLREAEDQLRNTQQQVEQGARAL   91 (214)
T ss_pred             HHHhcCchHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34555777763 3334    444442   455554444322 12355666677766666777778888888888888777


Q ss_pred             HHHHHHHH
Q 027924          198 QGVINSAY  205 (217)
Q Consensus       198 q~l~~s~y  205 (217)
                      ++..+.-+
T Consensus        92 ~~~~~~~~   99 (214)
T PRK04654         92 HDDVSRDI   99 (214)
T ss_pred             hhhhhccc
Confidence            75544433

>PRK08475 F0F1 ATP synthase subunit B; Validated

Probab=81.26  E-value=30  Score=28.76  Aligned_cols=76  Identities=11%  Similarity=-0.118  Sum_probs=44.9

Q ss_pred             HHhhhhhhHHHhhhChhhH---HHHHHHHHHhhccCchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924           96 AVGKVKEGIHVAASHPFIT---AGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEK  171 (217)
Q Consensus        96 ~f~kiKegv~~A~shP~~a---~g~a~~aglllLr~PRRfLyr~TlgrF~SEEaLl~~ae~~V~eLr~svdllk~Es~K  171 (217)
                      ||--+--++-+|.+|+++-   .-..+...++++--=..|||.-..+-+..=+..+..--.+.++.+..++.+..|.++
T Consensus         3 ~~~~~~~~~a~~~~~~~~~~~~~~~~~inflil~~lL~~fl~kPi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~   81 (167)
T PRK08475          3 FFLLLLGFYAFAASLGATEQYDIIERTINFLIFVGILWYFAAKPLKNFYKSRINKISKRLEEIQEKLKESKEKKEDALK   81 (167)
T ss_pred             HHHHHHHHHHHHcccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445567777777744   222233444444445569999888888776666665555555555555555555544

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	217
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 5e-04
 Identities = 26/201 (12%), Positives = 67/201 (33%), Gaps = 35/201 (17%)

Query: 22  VFKSQSLED--GNPWIDNAV---------QQVMIYRKIVEESIDS----AIEASRSRLSQ 66
           +   + ++    +    +           +Q  + +K VEE +       +   ++   Q
Sbjct: 45  ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ 104

Query: 67  TRLTASVHFQQTLDYLQDVKSEYAAYE---DAAVGKVKEGIHVAASHPFITAGGAIGLG- 122
             +  +  + +  D L +    +A Y         K+++ +        +   G +G G 
Sbjct: 105 PSMM-TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163

Query: 123 SFL-------LKRPRHF---LYYNTLRLFASEESLLSRADTKVKQLRQSIDR-LKAESEK 171
           +++        K        +++  L+   S E++L      +++L   ID    + S+ 
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL----EMLQKLLYQIDPNWTSRSDH 219

Query: 172 LEKVALVAEDELIRGRTKLRQ 192
              + L         R  L+ 
Sbjct: 220 SSNIKLRIHSIQAELRRLLKS 240

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00