Citrus Sinensis ID: 027942

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210------
Protein Sequence
MNLSCRFYMRDGLMTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQKGMASDDKSQSNLNLNSDKNEIASSDRQS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccccccccHHHHHHHHccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccEEEcHHHHHHHHHHHHHHHHHHHHcccHHcccccHcHHHHHHHHHccccccccEcccccHHHHcccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mnlscrfymrdglmtssvhdmsdnsdadeqrkhpesqlqsstpamgmshpsittpnvqyathqvgaghamapaaypypdpyyrsifapydaqpyppqpyggqpmlmgiqqagvplptdaveepvfvnAKQYHGILRRRQSRAKAESENKVlksrkpylhesRHLHALRRArgcggrflnskknenqqkgmasddksqsnlnlnsdkneiassdrqs
Flexible Loop (DISEMBL)
MNLSCRFYMRDGLMTSSVHDMSDNSDADEQRKHpesqlqsstpamGMSHPSITTPNVQYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMLMGIQQAGVPLPTDAVEEPVFVNAKqyhgilrrrqsrakaesenkvlksrkpylhesrhlHALRRARGCGGRFLNSKknenqqkgmasddksqsnlnlnsdkneiassdrqs
Low Complexity Region (SEG)
MNLSCRFYMRDGLMTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHamapaaypypdpyyRSIFapydaqpyppqpyggqpMLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQKGMASDDKSQSNLNLNSDKNEIASSDRQS
Disordered region (IsUnstruct)
********************************************************VQYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPY****YGGQPMLMGIQQAGVPLPTDAVEEPVFVNAKQYHGIL*********************************************************************************
Disordered Region (DISOPRED)
***************************************************************************PYPDPYYRS************************************EEPVFVNAKQYHGILRRRQSR***************************************************************************
Disordered Region (DISEMBL)
MNLSCRFYMRDGLMTSSVH****************************SHPSITTPNVQYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMLMGIQQAGVPLPTDAVEEPVFVNAKQYHG*****************LKSRKPYLHESRHLHALRRARGCGGRFLNSKKN****************LNLNSDKN*********
Disordered Region (DISPRO)
*******************************************************NVQYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRA**C***FL**************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNLSCRFYMRDGLMTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQKGMASDDKSQSNLNLNSDKNEIASSDRQS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	216	2.2.26 [Sep-21-2011]
Q84JP1	190	Nuclear transcription fac	yes	no	0.856	0.973	0.575	7e-56
Q8VY64	198	Nuclear transcription fac	no	no	0.865	0.944	0.529	4e-51
Q945M9	303	Nuclear transcription fac	no	no	0.819	0.584	0.406	6e-31
Q93ZH2	340	Nuclear transcription fac	no	no	0.625	0.397	0.455	5e-29
Q9LNP6	328	Nuclear transcription fac	no	no	0.476	0.314	0.530	1e-27
Q9LXV5	272	Nuclear transcription fac	no	no	0.652	0.518	0.444	2e-27
Q9SYH4	308	Nuclear transcription fac	no	no	0.412	0.288	0.622	7e-27
Q9LVJ7	308	Nuclear transcription fac	no	no	0.490	0.344	0.523	1e-25
Q8LFU0	269	Nuclear transcription fac	no	no	0.648	0.520	0.385	1e-20
Q9M9X4	295	Nuclear transcription fac	no	no	0.467	0.342	0.509	1e-19

>sp|Q84JP1|NFYA7_ARATH Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana GN=NFYA7 PE=2 SV=1

 Score =  216 bits (551), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 115/200 (57%), Positives = 149/200 (74%), Gaps = 15/200 (7%)

Query: 14  MTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHAMAPA 73
           MTSS+H++SDN  + E+++  +S  Q   P+   ++ SI T ++ Y+    G  ++MAP 
Sbjct: 1   MTSSIHELSDNIGSHEKQEQRDSHFQPPIPS-ARNYESIVT-SLVYS--DPGTTNSMAPG 56

Query: 74  AYPYPDPYYRSIFAPYDAQPYPPQPYGGQPM-LMGIQQAGVPLPTDAVEEPVFVNAKQYH 132
            YPYPDPYYRSIFAP      PPQPY G  + LMG+QQ GVPLP+DAVEEPVFVNAKQYH
Sbjct: 57  QYPYPDPYYRSIFAP------PPQPYTGVHLQLMGVQQQGVPLPSDAVEEPVFVNAKQYH 110

Query: 133 GILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQKGMAS 192
           GILRRRQSRA+ ES+NKV+KSRKPYLHESRHLHA+RR RGCGGRFLN+KK +   +  + 
Sbjct: 111 GILRRRQSRARLESQNKVIKSRKPYLHESRHLHAIRRPRGCGGRFLNAKKEDEHHEDSSH 170

Query: 193 DDKSQSNLNLNSDKNEIASS 212
           ++KS    NL++ K+ +A+S
Sbjct: 171 EEKS----NLSAGKSAMAAS 186

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8VY64|NFYA4_ARATH Nuclear transcription factor Y subunit A-4 OS=Arabidopsis thaliana GN=NFYA4 PE=2 SV=1

 Score =  201 bits (510), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 108/204 (52%), Positives = 145/204 (71%), Gaps = 17/204 (8%)

Query: 14  MTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHAMAPA 73
           MTSSVH++SDN+++  +++ P+SQ +   P+ G S  SI T +V            MA  
Sbjct: 1   MTSSVHELSDNNESHAKKERPDSQTRPQVPS-GRSSESIDTNSVY--------SEPMAHG 51

Query: 74  AYPYPDPYYRSIFAPYDAQPYPPQPY-GGQPMLMGIQQAGVPLPTDAVEEPVFVNAKQYH 132
            YPYPDPYYRS+FA    Q Y P PY G Q  LMG+QQ GVPL  DAVEEPVFVNAKQYH
Sbjct: 52  LYPYPDPYYRSVFA---QQAYLPHPYPGVQLQLMGMQQPGVPLQCDAVEEPVFVNAKQYH 108

Query: 133 GILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKK----NENQQK 188
           GILRRRQSRAK E+ N+ +K++KPY+HESRHLHA+RR RGCGGRFLN+KK    ++ +++
Sbjct: 109 GILRRRQSRAKLEARNRAIKAKKPYMHESRHLHAIRRPRGCGGRFLNAKKENGDHKEEEE 168

Query: 189 GMASDDKSQSNLNLNSDKNEIASS 212
             + ++ S+++ +L S+K  +A+S
Sbjct: 169 ATSDENTSEASSSLRSEKLAMATS 192

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q945M9|NFYA9_ARATH Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana GN=NFYA9 PE=2 SV=1

 Score =  134 bits (336), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 85/209 (40%), Positives = 114/209 (54%), Gaps = 32/209 (15%)

Query: 10  RDGLMTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHA 69
           ++  +T+S     D SD +++  H            G++ P    P+ Q   H VG    
Sbjct: 79  KESQVTTSPQSAGDYSDKNQESLH-----------HGITQP---PPHPQLVGHTVGWA-- 122

Query: 70  MAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMLMGIQQAGVPLPTDAVEEPVFVNAK 129
              ++ PY DPYY  +   Y   P    PYGG P       + +PLP +  +EPVFVNAK
Sbjct: 123 ---SSNPYQDPYYAGVMGAYGHHPLGFVPYGGMP------HSRMPLPPEMAQEPVFVNAK 173

Query: 130 QYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQKG 189
           QY  ILRRRQ+RAKAE E K++KSRKPYLHESRH HA+RR RG GGRF  +KK   +   
Sbjct: 174 QYQAILRRRQARAKAELEKKLIKSRKPYLHESRHQHAMRRPRGTGGRF--AKKTNTEASK 231

Query: 190 MASDDKS-----QSNLNLNSDKNEIASSD 213
             +++KS     QS  + NSD+ E  + D
Sbjct: 232 RKAEEKSNGHVTQSPSSSNSDQGEAWNGD 260

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93ZH2|NFYA3_ARATH Nuclear transcription factor Y subunit A-3 OS=Arabidopsis thaliana GN=NFYA3 PE=2 SV=2

 Score =  127 bits (320), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 67/147 (45%), Positives = 93/147 (63%), Gaps = 12/147 (8%)

Query: 55  PNVQYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMLMGIQQAGVP 114
           PN+ +A        A A  ++ Y DP+Y  + A      Y PQ     P ++ +    VP
Sbjct: 122 PNIHFAP-------AQANFSFHYADPHYGGLLAA----TYLPQAPTCNPQMVSMIPGRVP 170

Query: 115 LPTDAVE-EPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGC 173
           LP +  E +PVFVNAKQYH I+RRRQ RAK E++NK++++RKPYLHESRH+HAL+R RG 
Sbjct: 171 LPAELTETDPVFVNAKQYHAIMRRRQQRAKLEAQNKLIRARKPYLHESRHVHALKRPRGS 230

Query: 174 GGRFLNSKKNENQQKGMASDDKSQSNL 200
           GGRFLN+KK   + +  A+ ++ Q  L
Sbjct: 231 GGRFLNTKKLLQESEQAAAREQEQDKL 257

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LNP6|NFYA8_ARATH Nuclear transcription factor Y subunit A-8 OS=Arabidopsis thaliana GN=NFYA8 PE=2 SV=2

 Score =  123 bits (308), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 60/113 (53%), Positives = 77/113 (68%), Gaps = 10/113 (8%)

Query: 71  APAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMLMGIQQAGVPLPTDAVE-EPVFVNAK 129
           A  ++ Y DP++  +          P  Y  Q  +   Q   VPLP D +E EPVFVNAK
Sbjct: 129 ANFSFHYADPHFGGLM---------PAAYLPQATIWNPQMTRVPLPFDLIENEPVFVNAK 179

Query: 130 QYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKK 182
           Q+H I+RRRQ RAK E++NK++K+RKPYLHESRH+HAL+R RG GGRFLN+KK
Sbjct: 180 QFHAIMRRRQQRAKLEAQNKLIKARKPYLHESRHVHALKRPRGSGGRFLNTKK 232

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXV5|NFYA1_ARATH Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana GN=NFYA1 PE=2 SV=1

 Score =  122 bits (306), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/153 (44%), Positives = 87/153 (56%), Gaps = 12/153 (7%)

Query: 66  AGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMLMGIQQAGVPLPTDAVEEPVF 125
            GH +A    PY DPYY  +   Y  Q    +PY      +G+ +    LP D  +EPV+
Sbjct: 122 VGHYIACVPNPYQDPYYGGLMGAYGHQQLGFRPY------LGMPRERTALPLDMAQEPVY 175

Query: 126 VNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNEN 185
           VNAKQY GILRRR++RAKAE E KV++ RKPYLHESRH HA+RRAR  GGRF    + E 
Sbjct: 176 VNAKQYEGILRRRKARAKAELERKVIRDRKPYLHESRHKHAMRRARASGGRFAKKSEVEA 235

Query: 186 QQKGMASDDKSQSNLN------LNSDKNEIASS 212
            +     D +  S  N      + +D NE  +S
Sbjct: 236 GEDAGGRDRERGSATNSSGSEQVETDSNETLNS 268

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYH4|NFYA5_ARATH Nuclear transcription factor Y subunit A-5 OS=Arabidopsis thaliana GN=NFYA5 PE=2 SV=1

 Score =  120 bits (301), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 56/90 (62%), Positives = 69/90 (76%), Gaps = 1/90 (1%)

Query: 105 LMGIQQAGVPLPTDAVE-EPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRH 163
           +MG+  + VPLP    E EP+FVNAKQYH ILRRR+ RAK E++NK++K RKPYLHESRH
Sbjct: 160 MMGLVSSRVPLPHHIQENEPIFVNAKQYHAILRRRKHRAKLEAQNKLIKCRKPYLHESRH 219

Query: 164 LHALRRARGCGGRFLNSKKNENQQKGMASD 193
           LHAL+RARG GGRFLN+KK +     + S 
Sbjct: 220 LHALKRARGSGGRFLNTKKLQESSNSLCSS 249

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the blue light (BL) and abscisic acid (ABA) signaling pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVJ7|NFYA6_ARATH Nuclear transcription factor Y subunit A-6 OS=Arabidopsis thaliana GN=NFYA6 PE=2 SV=1

 Score =  116 bits (290), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/107 (52%), Positives = 75/107 (70%), Gaps = 1/107 (0%)

Query: 86  FAPYDAQPYPPQPYGGQPMLMGIQQAGVPLPTDAVE-EPVFVNAKQYHGILRRRQSRAKA 144
           F  + + PY  Q     P + G+  + +PLP +  E EP+FVNAKQY  ILRRR+ RAK 
Sbjct: 134 FNGFLSFPYASQHTVQHPQIRGLVPSRMPLPHNIPENEPIFVNAKQYQAILRRRERRAKL 193

Query: 145 ESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQKGMA 191
           E++NK++K RKPYLHESRHLHAL+R RG GGRFLN+KK++     ++
Sbjct: 194 EAQNKLIKVRKPYLHESRHLHALKRVRGSGGRFLNTKKHQESNSSLS 240

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LFU0|NFYAA_ARATH Nuclear transcription factor Y subunit A-10 OS=Arabidopsis thaliana GN=NFYA10 PE=2 SV=2

 Score =  100 bits (248), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/161 (38%), Positives = 91/161 (56%), Gaps = 21/161 (13%)

Query: 57  VQYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMLMGIQQAGVPLP 116
           +Q A  + G    M    +P+ + YY  + A      Y  Q   G+ M        +PL 
Sbjct: 82  MQSACFEFGFAQPMMYTKHPHVEQYYGVVSA------YGSQRSSGRVM--------IPLK 127

Query: 117 TDAVEE-PVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGG 175
            +  E+  ++VN+KQYHGI+RRRQSRAKAE   K+ + RKPY+H SRHLHA+RR RG GG
Sbjct: 128 METEEDGTIYVNSKQYHGIIRRRQSRAKAE---KLSRCRKPYMHHSRHLHAMRRPRGSGG 184

Query: 176 RFLNSKKNENQQKGMASDDKSQSNLNLNSDKNEIASSDRQS 216
           RFLN+K  +  ++   S+ +S    +    +NE  +S R++
Sbjct: 185 RFLNTKTADAAKQSKPSNSQSSEVFH---PENETINSSREA 222

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M9X4|NFYA2_ARATH Nuclear transcription factor Y subunit A-2 OS=Arabidopsis thaliana GN=NFYA2 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 67/106 (63%), Gaps = 5/106 (4%)

Query: 89  YDAQPYPPQPYGGQPMLMGIQ-QAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAES- 146
           Y   PY  Q Y G     G Q +  +PL  +  +  ++VN+KQYHGI+RRRQSRAKA + 
Sbjct: 102 YTKYPYGEQQYYGVVSAYGSQSRVMLPLNMETEDSTIYVNSKQYHGIIRRRQSRAKAAAV 161

Query: 147 -ENKVLKSR--KPYLHESRHLHALRRARGCGGRFLNSKKNENQQKG 189
            + K L SR  KPY+H SRHLHALRR RG GGRFLN+K    +  G
Sbjct: 162 LDQKKLSSRCRKPYMHHSRHLHALRRPRGSGGRFLNTKSQNLENSG 207

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
225444037	208	PREDICTED: nuclear transcription factor	0.939	0.975	0.807	5e-90
224113655	208	predicted protein [Populus trichocarpa]	0.939	0.975	0.793	9e-90
255564393	213	Nuclear transcription factor Y subunit A	0.939	0.953	0.755	2e-79
449433674	202	PREDICTED: nuclear transcription factor	0.912	0.975	0.774	1e-75
449490734	201	PREDICTED: nuclear transcription factor	0.884	0.950	0.767	2e-72
356555881	205	PREDICTED: nuclear transcription factor	0.925	0.975	0.735	3e-72
224056517	205	predicted protein [Populus trichocarpa]	0.865	0.912	0.770	3e-72
255638418	206	unknown [Glycine max]	0.916	0.961	0.687	6e-72
356533053	219	PREDICTED: nuclear transcription factor	0.981	0.968	0.692	1e-71
356533051	204	PREDICTED: nuclear transcription factor	0.916	0.970	0.733	4e-71

>gi|225444037|ref|XP_002282043.1| PREDICTED: nuclear transcription factor Y subunit A-7 isoform 1 [Vitis vinifera] gi|297740816|emb|CBI30998.3| unnamed protein product [Vitis vinifera]

 Score =  336 bits (861), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 168/208 (80%), Positives = 182/208 (87%), Gaps = 5/208 (2%)

Query: 14  MTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATH-QVGAGHAMAP 72
           MTSSVHD+SDNS+ADE +KH E Q+QSS+PA G SHP     N+ YAT  Q+GAGHAMA 
Sbjct: 1   MTSSVHDLSDNSEADEPQKHSELQVQSSSPAAGASHPGSAAANIPYATPPQLGAGHAMAQ 60

Query: 73  AAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPM----LMGIQQAGVPLPTDAVEEPVFVNA 128
           AAYPYPDPYYRSIFAPYDAQPYP Q Y GQPM    LMGIQQAGVPLP+DAVEEPVFVNA
Sbjct: 61  AAYPYPDPYYRSIFAPYDAQPYPAQHYSGQPMVHLQLMGIQQAGVPLPSDAVEEPVFVNA 120

Query: 129 KQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQK 188
           KQYHGILRRRQSRAKAESENKV+KSRKPYLHESRHLHALRRARGCGGRFLNSKKNE++Q 
Sbjct: 121 KQYHGILRRRQSRAKAESENKVVKSRKPYLHESRHLHALRRARGCGGRFLNSKKNESEQN 180

Query: 189 GMASDDKSQSNLNLNSDKNEIASSDRQS 216
            +AS DKSQSN+NLNSDKNE+ASSD  S
Sbjct: 181 EVASGDKSQSNINLNSDKNELASSDSTS 208

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113655|ref|XP_002332527.1| predicted protein [Populus trichocarpa] gi|222832639|gb|EEE71116.1| predicted protein [Populus trichocarpa]

 Score =  335 bits (858), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 165/208 (79%), Positives = 184/208 (88%), Gaps = 5/208 (2%)

Query: 14  MTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHAMAPA 73
           MTSSVHD+SDNS+A EQ+KH E Q+Q+S+PA  ++HP I+ PN QYAT Q+GAGHAMAPA
Sbjct: 1   MTSSVHDLSDNSEAGEQQKHSEPQVQTSSPANALAHPGISPPNFQYATPQLGAGHAMAPA 60

Query: 74  AYPYPDPYYRSIFAPYDAQPYPPQPYGGQPM----LMGIQQAGVPLPTDAVEEPVFVNAK 129
           AYPYPDPYYRSIFAP DAQPY PQPYG QPM    LMGIQQAGVPLP+DAVEEPVFVNAK
Sbjct: 61  AYPYPDPYYRSIFAPCDAQPYAPQPYGAQPMVHLQLMGIQQAGVPLPSDAVEEPVFVNAK 120

Query: 130 QYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQK- 188
           QYHGILRRRQSRAKAESENK +KSRKPYLHESRH HAL+RARGCGGRFLNSKK ENQQ+ 
Sbjct: 121 QYHGILRRRQSRAKAESENKAIKSRKPYLHESRHQHALKRARGCGGRFLNSKKKENQQQN 180

Query: 189 GMASDDKSQSNLNLNSDKNEIASSDRQS 216
           GMA  DKSQSN+NLN++KN+IAS D +S
Sbjct: 181 GMAPGDKSQSNVNLNANKNDIASLDDKS 208

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564393|ref|XP_002523193.1| Nuclear transcription factor Y subunit A-4, putative [Ricinus communis] gi|223537600|gb|EEF39224.1| Nuclear transcription factor Y subunit A-4, putative [Ricinus communis]

 Score =  300 bits (768), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 161/213 (75%), Positives = 175/213 (82%), Gaps = 10/213 (4%)

Query: 14  MTSSVHDMSDNSDADEQR-KHPESQLQSSTPAMGMSHPSITTPNVQYATHQ----VGAGH 68
           MTSSVHD SDNSDA+EQ+ K  E+Q QSS PA  M HP I+TPN  Y T +      A  
Sbjct: 1   MTSSVHDHSDNSDANEQQQKLSETQNQSSPPATAMVHPGISTPNAHYTTSRQLGSGHAMA 60

Query: 69  AMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPM----LMGIQQAGVPLPTDAVEEPV 124
           A   AAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPM    LMGIQQAGVPLP+D VEEPV
Sbjct: 61  AGGAAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPSDTVEEPV 120

Query: 125 FVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNE 184
           FVNAKQYHGILRRRQSRAKAESENKV+KSRKPYLHESRH HALRRARG GGRFLN+KKN+
Sbjct: 121 FVNAKQYHGILRRRQSRAKAESENKVIKSRKPYLHESRHQHALRRARGLGGRFLNAKKNQ 180

Query: 185 NQ-QKGMASDDKSQSNLNLNSDKNEIASSDRQS 216
           +Q Q  MAS DKSQSN+NLNSDK++I SSD +S
Sbjct: 181 HQEQNEMASGDKSQSNINLNSDKSDIVSSDGKS 213

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433674|ref|XP_004134622.1| PREDICTED: nuclear transcription factor Y subunit A-7-like isoform 1 [Cucumis sativus] gi|449433676|ref|XP_004134623.1| PREDICTED: nuclear transcription factor Y subunit A-7-like isoform 2 [Cucumis sativus]

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 158/204 (77%), Positives = 173/204 (84%), Gaps = 7/204 (3%)

Query: 14  MTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHAMAPA 73
           MTSSVHD SDN +ADEQRK+ ESQ  SS+   G++    +TPN   A+ QVGAGH+M P 
Sbjct: 1   MTSSVHDYSDNGEADEQRKYSESQNHSSSVINGLNQ---STPNQYVASPQVGAGHSMVPP 57

Query: 74  AYPYPDPYYRSIFAPYDAQPYPPQPYGGQPM----LMGIQQAGVPLPTDAVEEPVFVNAK 129
           AYPYPDPYYRSIF PYDAQPYPPQPYGGQPM    LMGIQQAGVPLPTDAVEEPVFVNAK
Sbjct: 58  AYPYPDPYYRSIFTPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAK 117

Query: 130 QYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQKG 189
           QYHGILRRRQSRAKAESENK LKSRKPYLHESRHLHALRRARGCGGRFL S KNEN Q  
Sbjct: 118 QYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENHQNE 177

Query: 190 MASDDKSQSNLNLNSDKNEIASSD 213
           +AS DKSQ N+NLNSD++++ASS+
Sbjct: 178 VASGDKSQPNINLNSDRSDLASSE 201

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449490734|ref|XP_004158691.1| PREDICTED: nuclear transcription factor Y subunit A-7-like, partial [Cucumis sativus]

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 152/198 (76%), Positives = 167/198 (84%), Gaps = 7/198 (3%)

Query: 20  DMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHAMAPAAYPYPD 79
           D SDN +ADEQRK+ ESQ  SS+   G++    +TPN   A+ QVGAGH+M P AYPYPD
Sbjct: 6   DCSDNGEADEQRKYSESQNHSSSVINGLNQ---STPNQYVASPQVGAGHSMVPPAYPYPD 62

Query: 80  PYYRSIFAPYDAQPYPPQPYGGQPM----LMGIQQAGVPLPTDAVEEPVFVNAKQYHGIL 135
           PYYRSIF PYDAQPYPPQPYGGQPM    LMGIQQAGVPLPTDAVEEPVFVNAKQYHGIL
Sbjct: 63  PYYRSIFTPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGIL 122

Query: 136 RRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQKGMASDDK 195
           RRRQSRAKAESENK LKSRKPYLHESRHLHALRRARGCGGRFL S KNEN Q  +AS DK
Sbjct: 123 RRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENHQNEVASGDK 182

Query: 196 SQSNLNLNSDKNEIASSD 213
           SQ N+NLNSD++++ASS+
Sbjct: 183 SQPNINLNSDRSDLASSE 200

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555881|ref|XP_003546258.1| PREDICTED: nuclear transcription factor Y subunit A-7-like isoform 1 [Glycine max] gi|356555883|ref|XP_003546259.1| PREDICTED: nuclear transcription factor Y subunit A-7-like isoform 2 [Glycine max]

 Score =  276 bits (707), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 153/208 (73%), Positives = 169/208 (81%), Gaps = 8/208 (3%)

Query: 14  MTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATH-QVGAGHAMAP 72
           MT+S  D+SDN   ++Q+  P+ Q  S   A G+SH  I T NVQYAT  Q+G GHA+ P
Sbjct: 1   MTTSTRDISDNEADEQQQSEPQMQHLS---ANGISHAGIGTQNVQYATPPQLGTGHAVVP 57

Query: 73  AAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPM----LMGIQQAGVPLPTDAVEEPVFVNA 128
             YPYPDPYYRSIFAPYDAQ YPPQPYGG PM    LMGIQQAGVPLPTD VEEPVFVNA
Sbjct: 58  PTYPYPDPYYRSIFAPYDAQTYPPQPYGGNPMVHLQLMGIQQAGVPLPTDTVEEPVFVNA 117

Query: 129 KQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQK 188
           KQYHGILRRRQSRAKAESE K  ++RKPYLHESRHLHALRRARGCGGRFLNSKK+ENQQ 
Sbjct: 118 KQYHGILRRRQSRAKAESEKKAARNRKPYLHESRHLHALRRARGCGGRFLNSKKDENQQD 177

Query: 189 GMASDDKSQSNLNLNSDKNEIASSDRQS 216
            +AS D+SQSN+NLNSDKNE+A SDR S
Sbjct: 178 EVASTDESQSNINLNSDKNELAPSDRTS 205

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056517|ref|XP_002298891.1| predicted protein [Populus trichocarpa] gi|222846149|gb|EEE83696.1| predicted protein [Populus trichocarpa]

 Score =  276 bits (707), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 151/196 (77%), Positives = 167/196 (85%), Gaps = 9/196 (4%)

Query: 6   RFYMRDGL----MTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYAT 61
           RF   D +    MTSS+HD+SDNS+ADEQ+   E Q+QSS+PAM  +HP  +TPNVQYAT
Sbjct: 2   RFEFGDSVCITAMTSSLHDLSDNSEADEQQNESEPQIQSSSPAMAQAHPGFSTPNVQYAT 61

Query: 62  HQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPM----LMGIQQAGVPLPT 117
            Q+GAGHAMAPA YPYPDPYYRSIFAPYD QPYPPQPYG QPM    LMGIQQAGVPLP+
Sbjct: 62  PQLGAGHAMAPATYPYPDPYYRSIFAPYDPQPYPPQPYGAQPMVHLQLMGIQQAGVPLPS 121

Query: 118 DAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRF 177
           DAVEEPVFVNAKQYHGILRRRQSRAKAESE+K +KSRKPYLHESRH HAL+RARGCGGRF
Sbjct: 122 DAVEEPVFVNAKQYHGILRRRQSRAKAESESKAIKSRKPYLHESRHQHALKRARGCGGRF 181

Query: 178 LNSKKNENQQ-KGMAS 192
           LNSKK ENQ+  G+AS
Sbjct: 182 LNSKKQENQEHNGVAS 197

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638418|gb|ACU19519.1| unknown [Glycine max]

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 143/208 (68%), Positives = 163/208 (78%), Gaps = 10/208 (4%)

Query: 16  SSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNV--QYAT-HQVGAGHAMAP 72
           +S HD++DN D  +Q+   ES +Q  +   G+S P I+T NV  QYA   Q+G GHAM P
Sbjct: 2   TSAHDLTDNEDDGQQQS--ESPMQPPS-VNGISDPGISTQNVNVQYAAPGQLGTGHAMVP 58

Query: 73  AAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPM----LMGIQQAGVPLPTDAVEEPVFVNA 128
             YPYPDPYYRSIFAPYD QPYPPQ Y GQPM    LMGIQQAGVPLPTDAVEEPVFVNA
Sbjct: 59  HVYPYPDPYYRSIFAPYDTQPYPPQAYSGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNA 118

Query: 129 KQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQK 188
           KQYHGILRRRQ RAKAESENK++++RKPYLHESRH HAL R RGCGGRFLNSKK +NQ  
Sbjct: 119 KQYHGILRRRQYRAKAESENKIIRNRKPYLHESRHKHALTRPRGCGGRFLNSKKAKNQND 178

Query: 189 GMASDDKSQSNLNLNSDKNEIASSDRQS 216
            +AS DKSQSN+N+N +KN+  SSDR S
Sbjct: 179 DVASADKSQSNININFNKNDQTSSDRAS 206

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533053|ref|XP_003535083.1| PREDICTED: nuclear transcription factor Y subunit A-7-like isoform 2 [Glycine max]

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 153/221 (69%), Positives = 176/221 (79%), Gaps = 9/221 (4%)

Query: 1   MNLSCRFYMRDGLMTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYA 60
           ++     ++   +MTS+ HD+SDN   D+Q+   ESQ++  + A G+S+  I T NVQYA
Sbjct: 3   VDWDTVLHVNQEIMTST-HDLSDNEADDQQQS--ESQMEPLS-ANGISYAGIATQNVQYA 58

Query: 61  T-HQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPM----LMGIQQAGVPL 115
           T  Q+G GHA+ P  YPYPDPYYRSIFAPYDAQ YPPQPYGG PM    LMGIQQAGVPL
Sbjct: 59  TPSQLGTGHAVVPPTYPYPDPYYRSIFAPYDAQTYPPQPYGGNPMVHLQLMGIQQAGVPL 118

Query: 116 PTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGG 175
           PTD VEEPVFVNAKQYHGILRRRQSRAKAESE K  ++RKPYLHESRHLHALRRARGCGG
Sbjct: 119 PTDTVEEPVFVNAKQYHGILRRRQSRAKAESEKKAARNRKPYLHESRHLHALRRARGCGG 178

Query: 176 RFLNSKKNENQQKGMASDDKSQSNLNLNSDKNEIASSDRQS 216
           RFLNSKK+ENQQ  +AS D+SQS +NLNSDKNE+A SDR S
Sbjct: 179 RFLNSKKDENQQDEVASTDESQSTINLNSDKNELAPSDRTS 219

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533051|ref|XP_003535082.1| PREDICTED: nuclear transcription factor Y subunit A-7-like isoform 1 [Glycine max]

 Score =  273 bits (697), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 151/206 (73%), Positives = 169/206 (82%), Gaps = 8/206 (3%)

Query: 16  SSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYAT-HQVGAGHAMAPAA 74
           +S HD+SDN   D+Q+   ESQ++  + A G+S+  I T NVQYAT  Q+G GHA+ P  
Sbjct: 2   TSTHDLSDNEADDQQQS--ESQMEPLS-ANGISYAGIATQNVQYATPSQLGTGHAVVPPT 58

Query: 75  YPYPDPYYRSIFAPYDAQPYPPQPYGGQPM----LMGIQQAGVPLPTDAVEEPVFVNAKQ 130
           YPYPDPYYRSIFAPYDAQ YPPQPYGG PM    LMGIQQAGVPLPTD VEEPVFVNAKQ
Sbjct: 59  YPYPDPYYRSIFAPYDAQTYPPQPYGGNPMVHLQLMGIQQAGVPLPTDTVEEPVFVNAKQ 118

Query: 131 YHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQKGM 190
           YHGILRRRQSRAKAESE K  ++RKPYLHESRHLHALRRARGCGGRFLNSKK+ENQQ  +
Sbjct: 119 YHGILRRRQSRAKAESEKKAARNRKPYLHESRHLHALRRARGCGGRFLNSKKDENQQDEV 178

Query: 191 ASDDKSQSNLNLNSDKNEIASSDRQS 216
           AS D+SQS +NLNSDKNE+A SDR S
Sbjct: 179 ASTDESQSTINLNSDKNELAPSDRTS 204

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
TAIR|locus:2061534	198	NF-YA4 ""nuclear factor Y, sub	0.5	0.545	0.607	1.5e-41
TAIR|locus:2028150	190	NF-YA7 ""nuclear factor Y, sub	0.879	1.0	0.482	1.2e-40
TAIR|locus:2014375	308	NF-YA5 ""nuclear factor Y, sub	0.458	0.321	0.564	4e-26
TAIR|locus:2007953	328	NF-YA8 ""nuclear factor Y, sub	0.342	0.225	0.706	3.6e-25
TAIR|locus:2088791	303	NF-YA9 ""nuclear factor Y, sub	0.486	0.346	0.535	3.6e-25
TAIR|locus:2032758	341	NF-YA3 ""nuclear factor Y, sub	0.407	0.258	0.588	4.2e-24
TAIR|locus:2088232	308	NF-YA6 ""nuclear factor Y, sub	0.402	0.282	0.579	5.3e-24
TAIR|locus:2144113	269	NF-YA10 ""nuclear factor Y, su	0.453	0.364	0.495	4.3e-23
TAIR|locus:2182245	272	NF-YA1 ""nuclear factor Y, sub	0.490	0.389	0.509	1e-22
SGD|S000003206	265	HAP2 "Subunit of the Hap2p/3p/	0.393	0.320	0.528	9.7e-22

TAIR|locus:2061534 NF-YA4 ""nuclear factor Y, subunit A4"" [Arabidopsis thaliana (taxid:3702)]

 Score = 363 (132.8 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
 Identities = 68/112 (60%), Positives = 92/112 (82%)

Query:   105 LMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHL 164
             LMG+QQ GVPL  DAVEEPVFVNAKQYHGILRRRQSRAK E+ N+ +K++KPY+HESRHL
Sbjct:    81 LMGMQQPGVPLQCDAVEEPVFVNAKQYHGILRRRQSRAKLEARNRAIKAKKPYMHESRHL 140

Query:   165 HALRRARGCGGRFLNSKK----NENQQKGMASDDKSQSNLNLNSDKNEIASS 212
             HA+RR RGCGGRFLN+KK    ++ +++  + ++ S+++ +L S+K  +A+S
Sbjct:   141 HAIRRPRGCGGRFLNAKKENGDHKEEEEATSDENTSEASSSLRSEKLAMATS 192

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009411 "response to UV" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009739 "response to gibberellin stimulus" evidence=RCA

GO:0009751 "response to salicylic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2028150 NF-YA7 ""nuclear factor Y, subunit A7"" [Arabidopsis thaliana (taxid:3702)]

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 98/203 (48%), Positives = 128/203 (63%)

Query:    14 MTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHXXXXX 73
             MTSS+H++SDN  + E+++  +S  Q   P+   ++ SI T  V Y+    G  +     
Sbjct:     1 MTSSIHELSDNIGSHEKQEQRDSHFQPPIPS-ARNYESIVTSLV-YS--DPGTTNSMAPG 56

Query:    74 XXXXXXXXXRSIFXXXXXXXXXXXXXXXXXMLMGIQQAGVPLPTDAVEEPVFVNAKQYHG 133
                      RSIF                  LMG+QQ GVPLP+DAVEEPVFVNAKQYHG
Sbjct:    57 QYPYPDPYYRSIFAPPPQPYTGVHL-----QLMGVQQQGVPLPSDAVEEPVFVNAKQYHG 111

Query:   134 ILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQKGMASD 193
             ILRRRQSRA+ ES+NKV+KSRKPYLHESRHLHA+RR RGCGGRFLN+KK +   +  + +
Sbjct:   112 ILRRRQSRARLESQNKVIKSRKPYLHESRHLHAIRRPRGCGGRFLNAKKEDEHHEDSSHE 171

Query:   194 DKSQSNLNLNSDKNEIASSDRQS 216
             +KS    NL++ K+ +A+S   S
Sbjct:   172 EKS----NLSAGKSAMAASSGTS 190

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

TAIR|locus:2014375 NF-YA5 ""nuclear factor Y, subunit A5"" [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 57/101 (56%), Positives = 74/101 (73%)

Query:   105 LMGIQQAGVPLPTDAVE-EPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRH 163
             +MG+  + VPLP    E EP+FVNAKQYH ILRRR+ RAK E++NK++K RKPYLHESRH
Sbjct:   160 MMGLVSSRVPLPHHIQENEPIFVNAKQYHAILRRRKHRAKLEAQNKLIKCRKPYLHESRH 219

Query:   164 LHALRRARGCGGRFLNSKKNENQQKGMASDDKSQS-NLNLN 203
             LHAL+RARG GGRFLN+KK +     + S   +   N +++
Sbjct:   220 LHALKRARGSGGRFLNTKKLQESSNSLCSSQMANGQNFSMS 260

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IMP

GO:0009785 "blue light signaling pathway" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

TAIR|locus:2007953 NF-YA8 ""nuclear factor Y, subunit A8"" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 53/75 (70%), Positives = 64/75 (85%)

Query:   109 QQAGVPLPTDAVE-EPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHAL 167
             Q   VPLP D +E EPVFVNAKQ+H I+RRRQ RAK E++NK++K+RKPYLHESRH+HAL
Sbjct:   158 QMTRVPLPFDLIENEPVFVNAKQFHAIMRRRQQRAKLEAQNKLIKARKPYLHESRHVHAL 217

Query:   168 RRARGCGGRFLNSKK 182
             +R RG GGRFLN+KK
Sbjct:   218 KRPRGSGGRFLNTKK 232

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

TAIR|locus:2088791 NF-YA9 ""nuclear factor Y, subunit A9"" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 60/112 (53%), Positives = 77/112 (68%)

Query:   107 GIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHA 166
             G+  + +PLP +  +EPVFVNAKQY  ILRRRQ+RAKAE E K++KSRKPYLHESRH HA
Sbjct:   151 GMPHSRMPLPPEMAQEPVFVNAKQYQAILRRRQARAKAELEKKLIKSRKPYLHESRHQHA 210

Query:   167 LRRARGCGGRFLNSKKNENQQKGMASDDKS-----QSNLNLNSDKNEIASSD 213
             +RR RG GGRF  +KK   +     +++KS     QS  + NSD+ E  + D
Sbjct:   211 MRRPRGTGGRF--AKKTNTEASKRKAEEKSNGHVTQSPSSSNSDQGEAWNGD 260

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0055046 "microgametogenesis" evidence=IMP

TAIR|locus:2032758 NF-YA3 ""nuclear factor Y, subunit A3"" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 53/90 (58%), Positives = 70/90 (77%)

Query:   113 VPLPTDAVE-EPVFVNAKQYHGILRRRQSRAKAESENKVLKSRK-PYLHESRHLHALRRA 170
             VPLP +  E +PVFVNAKQYH I+RRRQ RAK E++NK++++RK PYLHESRH+HAL+R 
Sbjct:   169 VPLPAELTETDPVFVNAKQYHAIMRRRQQRAKLEAQNKLIRARKVPYLHESRHVHALKRP 228

Query:   171 RGCGGRFLNSKKNENQQKGMASDDKSQSNL 200
             RG GGRFLN+KK   + +  A+ ++ Q  L
Sbjct:   229 RGSGGRFLNTKKLLQESEQAAAREQEQDKL 258

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;IGI;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2088232 NF-YA6 ""nuclear factor Y, subunit A6"" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 51/88 (57%), Positives = 68/88 (77%)

Query:   105 LMGIQQAGVPLPTDAVE-EPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRH 163
             + G+  + +PLP +  E EP+FVNAKQY  ILRRR+ RAK E++NK++K RKPYLHESRH
Sbjct:   153 IRGLVPSRMPLPHNIPENEPIFVNAKQYQAILRRRERRAKLEAQNKLIKVRKPYLHESRH 212

Query:   164 LHALRRARGCGGRFLNSKKNENQQKGMA 191
             LHAL+R RG GGRFLN+KK++     ++
Sbjct:   213 LHALKRVRGSGGRFLNTKKHQESNSSLS 240

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

TAIR|locus:2144113 NF-YA10 ""nuclear factor Y, subunit A10"" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 4.3e-23, Sum P(2) = 4.3e-23
 Identities = 52/105 (49%), Positives = 74/105 (70%)

Query:   113 VPLPTDAVEE-PVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRAR 171
             +PL  +  E+  ++VN+KQYHGI+RRRQSRAKAE   K+ + RKPY+H SRHLHA+RR R
Sbjct:   124 IPLKMETEEDGTIYVNSKQYHGIIRRRQSRAKAE---KLSRCRKPYMHHSRHLHAMRRPR 180

Query:   172 GCGGRFLNSKKNENQQKGMASDDKSQSNLNLNSDKNEIASSDRQS 216
             G GGRFLN+K  +  ++   S+  SQS+  +   +NE  +S R++
Sbjct:   181 GSGGRFLNTKTADAAKQSKPSN--SQSS-EVFHPENETINSSREA 222

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

TAIR|locus:2182245 NF-YA1 ""nuclear factor Y, subunit A1"" [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 55/108 (50%), Positives = 71/108 (65%)

Query:   106 MGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLH 165
             +G+ +    LP D  +EPV+VNAKQY GILRRR++RAKAE E KV++ RKPYLHESRH H
Sbjct:   156 LGMPRERTALPLDMAQEPVYVNAKQYEGILRRRKARAKAELERKVIRDRKPYLHESRHKH 215

Query:   166 ALRRARGCGGRFLNSKKNENQQKGMASDDKSQSNLNLNSDKNEIASSD 213
             A+RRAR  GGRF  +KK+E +    A     +     NS  +E   +D
Sbjct:   216 AMRRARASGGRF--AKKSEVEAGEDAGGRDRERGSATNSSGSEQVETD 261

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;IGI;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0055046 "microgametogenesis" evidence=IMP

SGD|S000003206 HAP2 "Subunit of the Hap2p/3p/4p/5p CCAAT-binding complex" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 222 (83.2 bits), Expect = 9.7e-22, Sum P(2) = 9.7e-22
 Identities = 46/87 (52%), Positives = 59/87 (67%)

Query:   115 LPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCG 174
             L T   E+P +VNAKQY+ IL+RR +RAK E + ++ + RKPYLHESRH HA+RR RG G
Sbjct:   152 LGTAIAEQPFYVNAKQYYRILKRRYARAKLEEKLRISRERKPYLHESRHKHAMRRPRGEG 211

Query:   175 GRFLNSK--KNENQQKGMASDDKSQSN 199
             GRFL +   K    +K  ASDD   S+
Sbjct:   212 GRFLTAAEIKAMKSKKSGASDDPDDSH 238

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0003677 "DNA binding" evidence=IEA

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IDA

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;IDA;IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0000978 "RNA polymerase II core promoter proximal region sequence-specific DNA binding" evidence=IDA

GO:0000436 "carbon catabolite activation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0043457 "regulation of cellular respiration" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q84JP1	NFYA7_ARATH	No assigned EC number	0.575	0.8564	0.9736	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.02360004 hypothetical protein (208 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	216
pfam02045	57	pfam02045, CBFB_NFYA, CCAAT-binding transcription	1e-33
smart00521	62	smart00521, CBF, CCAAT-Binding transcription Facto	5e-33
COG5224	248	COG5224, HAP2, CCAAT-binding factor, subunit B [Tr	3e-08

>gnl|CDD|190198 pfam02045, CBFB_NFYA, CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

 Score =  114 bits (288), Expect = 1e-33
 Identities = 44/57 (77%), Positives = 52/57 (91%)

Query: 121 EEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRF 177
           +EP++VNAKQYH ILRRRQ+RAK E+ENK++KSRKPYLHESRH HA+RR RG GGRF
Sbjct: 1   DEPIYVNAKQYHRILRRRQARAKLEAENKLIKSRKPYLHESRHKHAMRRPRGSGGRF 57

Length = 57

>gnl|CDD|128795 smart00521, CBF, CCAAT-Binding transcription Factor

 Score =  113 bits (284), Expect = 5e-33
 Identities = 47/61 (77%), Positives = 53/61 (86%)

Query: 119 AVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFL 178
           A EEPV+VNAKQYH ILRRRQ+RAK E++ K+ K RKPYLHESRHLHA+RR RG GGRFL
Sbjct: 1   AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFL 60

Query: 179 N 179
           N
Sbjct: 61  N 61

Length = 62

>gnl|CDD|227549 COG5224, HAP2, CCAAT-binding factor, subunit B [Transcription]

 Score = 52.1 bits (124), Expect = 3e-08
 Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 121 EEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNS 180
            +P +VNAKQ + I +R   R   +    V   R  YLHESRH HA+ R R   GRFL +
Sbjct: 158 FQPDYVNAKQGNEISKRPGLRVYLDD--SVSAGRAFYLHESRHKHAMLRVRDPTGRFLTA 215

Query: 181 KKNENQQKGMASDD 194
            + +       + D
Sbjct: 216 SEIDPLNLTGNTQD 229

Length = 248

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	216
KOG1561	307	consensus CCAAT-binding factor, subunit B (HAP2) [	100.0
smart00521	62	CBF CCAAT-Binding transcription Factor.	100.0
PF02045	58	CBFB_NFYA: CCAAT-binding transcription factor (CBF	100.0
COG5224	248	HAP2 CCAAT-binding factor, subunit B [Transcriptio	99.82
PF06203	45	CCT: CCT motif; InterPro: IPR010402 The CCT (CONST	81.81

>KOG1561 consensus CCAAT-binding factor, subunit B (HAP2) [Transcription]

Probab=100.00  E-value=1.1e-44  Score=323.93  Aligned_cols=117  Identities=49%  Similarity=0.811  Sum_probs=102.1

Q ss_pred             cCcccccc-CCCCCCCCcccccc---cCCCCCCCCCCCCCCCccccccc-CCCCCCCCCCC-CceeechhhhHHHHHHHH
Q 027942           66 AGHAMAPA-AYPYPDPYYRSIFA---PYDAQPYPPQPYGGQPMLMGIQQ-AGVPLPTDAVE-EPVFVNAKQYHGILRRRQ  139 (216)
Q Consensus        66 ~ghs~a~~-~yPy~Dpyygg~~a---aYg~q~~~~~p~~~~p~l~Gm~~-~r~plp~~~~e-ePvyVNaKQY~rIlRRRq  139 (216)
                      ..|..+++ .+||.+|||+|++.   +|++|+..    ...+++.||.+ .|+|||.++.| |||||||||||||||||+
T Consensus       126 ~~~~~~~~s~~~~~~p~~~g~~~~~~~y~~~~~~----~~~~q~~g~~~~~r~pLP~~~~e~ePl~VNaKQY~~IlrRRq  201 (307)
T KOG1561|consen  126 SMSPANNTSGNPITSPHYRGVLDMSGAYSGQPTN----TASTQYSGPVPHDRTPLPQTDSETEPLYVNAKQYHRILRRRQ  201 (307)
T ss_pred             ccccccccccCCCCCCcccceecccccccCCCCc----cccccccCCCCcCcccCCccccCCCceeEcHHHHHHHHHHHH
Confidence            34444444 48999999999999   55555331    34668899999 99999999877 999999999999999999


Q ss_pred             HHHHHHhhhhhhccCCCcchhhhhHHHhhccCCCCCcccccccchhh
Q 027942          140 SRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQ  186 (216)
Q Consensus       140 ~RaklE~~~kl~k~rkpYLHESRH~HAm~R~Rg~gGRFL~~k~~~~~  186 (216)
                      +|||||+++||+|.||||||||||+|||||+||+||||||+||.+.+
T Consensus       202 ~RaKlEa~~klik~RkpYLHESRH~HAmkR~RG~GGRFln~k~~~~~  248 (307)
T KOG1561|consen  202 ARAKLEATTKLIKARKPYLHESRHLHAMKRARGEGGRFLNTKEYHDD  248 (307)
T ss_pred             HHhhhhhcccchhhcCccccchhhHHHhhcccCCCCCCCchhhhhhh
Confidence            99999999999999999999999999999999999999999997655

>smart00521 CBF CCAAT-Binding transcription Factor

Probab=100.00  E-value=2.3e-38  Score=230.06  Aligned_cols=62  Identities=76%  Similarity=1.183  Sum_probs=60.1

Q ss_pred             CCCCceeechhhhHHHHHHHHHHHHHHhhhhhhccCCCcchhhhhHHHhhccCCCCCccccc
Q 027942          119 AVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNS  180 (216)
Q Consensus       119 ~~eePvyVNaKQY~rIlRRRq~RaklE~~~kl~k~rkpYLHESRH~HAm~R~Rg~gGRFL~~  180 (216)
                      ++|+|||||||||++|||||++|||+|+++++++.||||||||||+|||+|+||+||||||+
T Consensus         1 ~~~~piyVNaKQy~~IlrRR~~Rak~e~~~kl~~~rkpYlhESRH~HAm~R~Rg~gGRFl~~   62 (62)
T smart00521        1 AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFLNT   62 (62)
T ss_pred             CCCcceeEcHHHHHHHHHHHHHHHHHHHhcchhhccCCcccchhHHHHHccCcCCCCCCCCC
Confidence            36899999999999999999999999999999999999999999999999999999999985

>PF02045 CBFB_NFYA: CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B; InterPro: IPR001289 The CCAAT-binding factor (CBFB/NF-YA) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin []

Probab=100.00  E-value=6.4e-36  Score=214.94  Aligned_cols=57  Identities=75%  Similarity=1.184  Sum_probs=56.2

Q ss_pred             CCceeechhhhHHHHHHHHHHHHHHhhhhh-hccCCCcchhhhhHHHhhccCCCCCcc
Q 027942          121 EEPVFVNAKQYHGILRRRQSRAKAESENKV-LKSRKPYLHESRHLHALRRARGCGGRF  177 (216)
Q Consensus       121 eePvyVNaKQY~rIlRRRq~RaklE~~~kl-~k~rkpYLHESRH~HAm~R~Rg~gGRF  177 (216)
                      |+|||||||||++|||||++|||||+++|+ ++.||||||||||+|||+|+||+||||
T Consensus         1 ~~piyVNaKQY~rIlrRR~~Rakle~~~k~~~~~rk~YlheSRH~HA~~R~Rg~gGRF   58 (58)
T PF02045_consen    1 EEPIYVNAKQYHRILRRRQARAKLEAEGKLSPKKRKPYLHESRHKHAMRRPRGPGGRF   58 (58)
T ss_pred             CCCeeECHHHHHHHHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHcCccCCCCCC
Confidence            689999999999999999999999999999 999999999999999999999999999

The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding []. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The B subunit contains a region of similarity with the yeast protein HAP2 []. For the B subunit it has been suggested that the N-terminal portion of the conserved region is involved in subunit interaction and the C-terminal region involved in DNA-binding [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5224 HAP2 CCAAT-binding factor, subunit B [Transcription]

Probab=99.82  E-value=3.2e-21  Score=168.89  Aligned_cols=66  Identities=39%  Similarity=0.508  Sum_probs=60.4

Q ss_pred             CCCceeechhhhHHHHHHHHHHHHHHhhhhhhccCCCcchhhhhHHHhhccCCCCCcccccccchhhh
Q 027942          120 VEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQ  187 (216)
Q Consensus       120 ~eePvyVNaKQY~rIlRRRq~RaklE~~~kl~k~rkpYLHESRH~HAm~R~Rg~gGRFL~~k~~~~~~  187 (216)
                      ..+|.|||+|||++|++||-+|++||..  |.-.|..|||||||+|||+|+|+++||||++.+.+..+
T Consensus       157 sfqp~Yvnakq~n~i~kr~~~r~~ld~~--~~~~r~~ylHesrhkham~r~r~ptgrfLtasEi~~ln  222 (248)
T COG5224         157 SFQPDYVNAKQGNEISKRPGLRVYLDDS--VSAGRAFYLHESRHKHAMLRVRDPTGRFLTASEIDPLN  222 (248)
T ss_pred             ccCcchhhhhhhhHHhcchhHHHHHHHH--hhhhhhhccccchhhhhhhcccCCCcceecHHhhhhhh
Confidence            4689999999999999999999999986  55667779999999999999999999999999998764

>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction

Probab=81.81  E-value=2.3  Score=29.69  Aligned_cols=27  Identities=37%  Similarity=0.401  Sum_probs=22.7

Q ss_pred             CCcchhhhhHHHhhccCCCCCccccccc
Q 027942          155 KPYLHESRHLHALRRARGCGGRFLNSKK  182 (216)
Q Consensus       155 kpYLHESRH~HAm~R~Rg~gGRFL~~k~  182 (216)
                      |.-.+++|..=|..|+|-. |||+..++
T Consensus        19 kkirY~~Rk~~A~~R~Rvk-GRFvk~~e   45 (45)
T PF06203_consen   19 KKIRYESRKAVADKRPRVK-GRFVKKSE   45 (45)
T ss_pred             ccCCcchHHHHHhhCCccC-CcccCCCC
Confidence            5677899999999999965 99987653

The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	216
4awl_A	78	The Nf-y Transcription Factor Is Structurally And F		5e-18
4g91_A	64	Ccaat-Binding Complex From Aspergillus Nidulans Len		9e-15

>pdb|4AWL|A Chain A, The Nf-y Transcription Factor Is Structurally And Functionally A Sequence Specific Histone Length = 78

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 53/66 (80%)
Query: 120 VEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLN 179
           +EEP++VNAKQYH IL+RRQ+RAK E+E K+ K R+ YLHESRH HA+ R RG GGRF +
Sbjct: 1   MEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFS 60
Query: 180 SKKNEN 185
            K+ ++
Sbjct: 61  PKEKDS 66

>pdb|4G91|A Chain A, Ccaat-Binding Complex From Aspergillus Nidulans Length = 64

Iteration: 1
 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 37/62 (59%), Positives = 48/62 (77%), Gaps = 1/62 (1%)
Query: 120 VEEPVFVNAKQYHGILRRRQSRAKAESENKVL-KSRKPYLHESRHLHALRRARGCGGRFL 178
           +E P++VNAKQ+H IL+RR +R K E + ++  K RKPYLHESRH HA+RR RG GGRFL
Sbjct: 1   MESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRFL 60
Query: 179 NS 180
            +
Sbjct: 61  TA 62

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	216
4g92_A	64	HAPB protein; transcription factor, nucleosome, mi	100.0

>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*

Probab=100.00  E-value=1.7e-38  Score=230.89  Aligned_cols=63  Identities=59%  Similarity=1.000  Sum_probs=58.6

Q ss_pred             CCCceeechhhhHHHHHHHHHHHHHHhhhhhh-ccCCCcchhhhhHHHhhccCCCCCccccccc
Q 027942          120 VEEPVFVNAKQYHGILRRRQSRAKAESENKVL-KSRKPYLHESRHLHALRRARGCGGRFLNSKK  182 (216)
Q Consensus       120 ~eePvyVNaKQY~rIlRRRq~RaklE~~~kl~-k~rkpYLHESRH~HAm~R~Rg~gGRFL~~k~  182 (216)
                      .|+|||||||||++|||||++|+|+|++++++ +.||||||||||+|||+|+||+||||||++|
T Consensus         1 ~eePiyVNaKQy~~IlrRR~~Rakle~~~kl~~~~rk~YlhESRH~HAm~R~Rg~gGRFl~~~e   64 (64)
T 4g92_A            1 MESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRFLTADE   64 (64)
T ss_dssp             --CCSCCCTTTHHHHHHHHHHHHHHHHHTTCCSSSCCSCSCHHHHHHHHHSCBCTTSCBCCCC-
T ss_pred             CCCCeeECHHHHHHHHHHHHHHHHHHHhCCcccccccCcchhHHHHHHhcCCcCCCCccccCCC
Confidence            37999999999999999999999999999985 8899999999999999999999999999875

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00