Citrus Sinensis ID: 027943

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210------
Protein Sequence
MECSCLHGSFLPILPFHKTVISPNCHNFPSNSTTRRRFPSKFTVNCTERTGENASTPPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFDYPECEALDVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRIILEELLER
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHEccccccccEEEcccccHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccEEcccccccccccccccccccccccccccccccccccEEEEEEEEccccccccccccccHHHHHcccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccccHHHcccccccccccccHccEEEEcEEEEcccccccHHEEcccEEEEEcccccEEEEEcccccHHHHHHHHHHccccEEEEccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mecsclhgsflpilpfhktvispnchnfpsnsttrrrfpskftvnctertgenastppstssayailgvepscsAAELKAAFRAKVKqyhpdvnrdgrdsDALIRRIIQAYEILTEysrleiierecidpfdypeceaLDVFVNEVLcvgkgcpyscvktapnafsyssstgTARAISQGHGQDYRVQLAvgqcprscihyvtpsQRIILEELLER
Flexible Loop (DISEMBL)
MECSCLHGSFLPILPFHKTVISPNCHNfpsnsttrrrfpSKFTVNCtertgenastppsTSSAYAILGVEPSCSAAELKAAFRAKVkqyhpdvnrdgrdsdaLIRRIIQAYeilteysrleIIERECIDPFDYPECEALDVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRScihyvtpsqrIILEELLER
Low Complexity Region (SEG)
MECSCLHGSFLPILPFHKTVISPNCHNFPSNSTTRRRFPSKFTVNCTERTGENastppstssaYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFDYPECEALDVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRIILEELLER
Disordered region (IsUnstruct)
***SCLHGSFLPILPFHKTVISPNCHNF***********************************YAILGVEPSCSAAELKAAFRAKVKQYHPDV*****DSDALIRRIIQAYEILTEYSRLEIIERECIDPFDYPECEALDVFVNEVLCVGKGCPYSCVKTAPNAFSYS****TARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRIILE*****
Disordered Region (DISOPRED)
************ILPF**********************************************AYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFDYPECEALDVFVNEVLCVGKGCPYSCVKTAPNAFS*****************DYRVQLAVGQCPRSCIHYVTPSQRIILEELLE*
Disordered Region (DISEMBL)
MECSCLHGSFLPILPFHKTVISPNCHNFPSNSTTRRRFPSKFTVNCT*************SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFDYPECEALDVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRIILEELLER
Disordered Region (DISPRO)
**C*CLHGSFLPILPFHKTVIS**C********T**RFPSKFTVNCTERT*****TPPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFDYPECEALDVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRIILEELLER
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MECSCLHGSFLPILPFHKTVISPNCHNFPSNSTTRRRFPSKFTVNCTERTGENASTPPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFDYPECEALDVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRIILEELLER
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	216	2.2.26 [Sep-21-2011]
Q5LWJ5	381	Chaperone protein DnaJ OS	yes	no	0.287	0.162	0.387	5e-08
P29944	171	Uncharacterized 19.0 kDa	N/A	no	0.444	0.561	0.302	3e-07
A3DF24	386	Chaperone protein DnaJ OS	yes	no	0.310	0.173	0.385	5e-07
A1B4F0	384	Chaperone protein DnaJ OS	yes	no	0.287	0.161	0.419	6e-07
B8I304	379	Chaperone protein DnaJ OS	yes	no	0.310	0.176	0.4	7e-07
P50026	287	Chaperone protein DnaJ OS	no	no	0.388	0.292	0.347	8e-07
B1ZUS0	382	Chaperone protein DnaJ OS	yes	no	0.245	0.138	0.415	1e-06
A0AIS3	376	Chaperone protein DnaJ OS	yes	no	0.305	0.175	0.382	1e-06
A7NS65	370	Chaperone protein DnaJ OS	yes	no	0.282	0.164	0.403	1e-06
Q6L0S6	357	Chaperone protein DnaJ OS	yes	no	0.245	0.148	0.415	1e-06

>sp|Q5LWJ5|DNAJ_RUEPO Chaperone protein DnaJ OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=dnaJ PE=3 SV=1

 Score = 57.8 bits (138), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 39/62 (62%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
           Y +LGV    SA E+K A+R K K+ HPD N+D  D+++L + + +AYE+L +  +    
Sbjct: 7   YDVLGVSKGASADEIKKAYRGKAKELHPDRNKDNPDAESLFKEVNEAYEVLKDAEKKAAY 66

Query: 124 ER 125
           +R
Sbjct: 67  DR 68

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.
Silicibacter pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (taxid: 246200)

>sp|P29944|YCB2_PSEDE Uncharacterized 19.0 kDa protein in cobS 5'region OS=Pseudomonas denitrificans PE=4 SV=1

 Score = 55.5 bits (132), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 13/109 (11%)

Query: 21  ISPNCHNFPSNSTTRR---------RFPSKFTVNCTERTGE----NASTPPSTSSAYAIL 67
           ++ N  N P+ S TR          R P  F      R+G             + A+  L
Sbjct: 59  VNKNAKNGPTQSQTRSGSAGAQARMRDPFGFVSEARARSGRPEPRQRKLKTLEAKAFETL 118

Query: 68  GVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
           G+  S + A++KAA++  VK++HPD N   R S+   R +IQAY++L +
Sbjct: 119 GLGASATTADIKAAYKDLVKKHHPDANGGDRGSEERFRAVIQAYQLLKQ 167

Pseudomonas denitrificans (taxid: 43306)

>sp|A3DF24|DNAJ_CLOTH Chaperone protein DnaJ OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=dnaJ PE=3 SV=1

 Score = 54.3 bits (129), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 3/70 (4%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE---YSRL 120
           Y ILGV+   S AE+K A+R   KQYHPD+N   + ++A  + I +AYE+L++    +R 
Sbjct: 8   YEILGVDRGASDAEIKKAYRKLAKQYHPDMNPGDKAAEAKFKEINEAYEVLSDPQKRARY 67

Query: 121 EIIERECIDP 130
           +       DP
Sbjct: 68  DQFGHSAFDP 77

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Clostridium thermocellum (strain ATCC 27405 / DSM 1237) (taxid: 203119)

>sp|A1B4F0|DNAJ_PARDP Chaperone protein DnaJ OS=Paracoccus denitrificans (strain Pd 1222) GN=dnaJ PE=3 SV=1

 Score = 54.3 bits (129), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 38/62 (61%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
           Y +LGV    SA E+K A+RAK KQ HPD N+D + S+A  + + +AYE L +  +    
Sbjct: 7   YEVLGVARGASADEIKKAYRAKAKQLHPDRNKDCKVSEAAFKEVNEAYECLKDDQKKAAY 66

Query: 124 ER 125
           +R
Sbjct: 67  DR 68

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Paracoccus denitrificans (strain Pd 1222) (taxid: 318586)

>sp|B8I304|DNAJ_CLOCE Chaperone protein DnaJ OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=dnaJ PE=3 SV=1

 Score = 53.9 bits (128), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 3/70 (4%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE---YSRL 120
           Y +LGV+ + S AELK A+R   K+YHPDVN     ++A  + + +AYEIL++    SR 
Sbjct: 8   YEVLGVDKNASDAELKKAYRNLAKKYHPDVNPGDTTAEAKFKEVNEAYEILSDSQKRSRY 67

Query: 121 EIIERECIDP 130
           +       DP
Sbjct: 68  DQFGHAGTDP 77

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) (taxid: 394503)

>sp|P50026|DNAJ_SYNE7 Chaperone protein DnaJ OS=Synechococcus elongatus (strain PCC 7942) GN=dnaJ PE=3 SV=2

 Score = 53.9 bits (128), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 11/95 (11%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT------EY 117
           YA+LG+  S   A +KAAFR   +Q HPD+N   R ++   ++I +AYEIL+      EY
Sbjct: 8   YALLGIPQSADQAAIKAAFRKLARQCHPDLNPGDRQAEERFKQISEAYEILSDPDRRAEY 67

Query: 118 SRLEIIERE-----CIDPFDYPECEALDVFVNEVL 147
            R     ++          DY +    D+FV+E+L
Sbjct: 68  QRFSRYWQQQGAASVGSDDDYGDFPDFDIFVDELL 102

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

>sp|B1ZUS0|DNAJ_OPITP Chaperone protein DnaJ OS=Opitutus terrae (strain DSM 11246 / PB90-1) GN=dnaJ PE=3 SV=1

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 34/53 (64%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
           Y +LGV+   S  ELK A+R K  QYHPD N   ++++ + ++I  AYE+L +
Sbjct: 7   YELLGVQKGASEEELKKAYRKKAVQYHPDKNPGNKEAEEMFKKISHAYEVLKD 59

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Opitutus terrae (strain DSM 11246 / PB90-1) (taxid: 452637)

>sp|A0AIS3|DNAJ_LISW6 Chaperone protein DnaJ OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=dnaJ PE=3 SV=1

 Score = 53.1 bits (126), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE-YSRLEI 122
           Y +LG+  S SA E+K A+R   KQYHPD+N++   +D   + I +AYE+L++   R + 
Sbjct: 7   YEVLGISKSASADEIKKAYRKLSKQYHPDINKEA-GADEKFKEISEAYEVLSDSQKRAQY 65

Query: 123 IERECIDP 130
            +   +DP
Sbjct: 66  DQYGHVDP 73

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) (taxid: 386043)

>sp|A7NS65|DNAJ_ROSCS Chaperone protein DnaJ OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=dnaJ PE=3 SV=1

 Score = 53.1 bits (126), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 1/62 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
           Y +LGV+ + S  E+K AFR   +QYHPDVN+   D++A  + I +AYE+L++  +  + 
Sbjct: 8   YEVLGVQRNASQDEIKKAFRRLARQYHPDVNK-APDAEAKFKEINEAYEVLSDPEKRSMY 66

Query: 124 ER 125
           +R
Sbjct: 67  DR 68

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Roseiflexus castenholzii (strain DSM 13941 / HLO8) (taxid: 383372)

>sp|Q6L0S6|DNAJ_PICTO Chaperone protein DnaJ OS=Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828) GN=dnaJ PE=3 SV=1

 Score = 53.1 bits (126), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 36/53 (67%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
           YAILGV+ + S  ++K AFR   K+YHPD N   ++++   + I +AYE+L++
Sbjct: 6   YAILGVDRNASQDDIKKAFRELAKKYHPDANPGNKEAEEKFKEIAEAYEVLSD 58

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828) (taxid: 263820)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
255542634	736	pentatricopeptide repeat-containing prot	0.907	0.266	0.731	9e-82
224125242	266	predicted protein [Populus trichocarpa]	0.986	0.800	0.687	2e-77
147798217	322	hypothetical protein VITISV_018290 [Viti	0.986	0.661	0.680	4e-76
359487742	265	PREDICTED: uncharacterized protein LOC10	0.986	0.803	0.680	1e-75
449482847	833	PREDICTED: putative pentatricopeptide re	0.875	0.226	0.663	2e-74
449442815	838	PREDICTED: pentatricopeptide repeat-cont	0.875	0.225	0.663	2e-74
238479656	244	DnaJ domain-containing protein [Arabidop	0.833	0.737	0.711	8e-68
357512005	251	Chaperone protein dnaJ [Medicago truncat	0.870	0.749	0.642	3e-64
356504050	753	PREDICTED: pentatricopeptide repeat-cont	0.796	0.228	0.646	4e-64
255640444	260	unknown [Glycine max]	0.796	0.661	0.646	4e-61

>gi|255542634|ref|XP_002512380.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223548341|gb|EEF49832.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  308 bits (789), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 150/205 (73%), Positives = 174/205 (84%), Gaps = 9/205 (4%)

Query: 18  KTVISPNCHNFPSNSTTRR--RFPS----KFTVNCTERTGENASTPPSTSSA-YAILGVE 70
           K+V  PN HN  SN  +R   RFPS    KFTVNC+ER G++  TP S+SSA + +LGV+
Sbjct: 487 KSVTYPNGHNLFSNFNSRNPLRFPSHSNSKFTVNCSERIGDD--TPLSSSSAAHMVLGVD 544

Query: 71  PSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP 130
           P CSAAELKAAFRAKVKQ+HPDVNRD +  D +IRR+IQAYEIL+ +SR EIIE EC+DP
Sbjct: 545 PGCSAAELKAAFRAKVKQFHPDVNRDRKFPDTMIRRVIQAYEILSNFSRSEIIESECLDP 604

Query: 131 FDYPECEALDVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLA 190
           FD PECEA D+FVNEVLC GKGCPYSCV+TAP+AF+Y+SSTGTARAISQGHG+DY+VQLA
Sbjct: 605 FDNPECEAFDIFVNEVLCAGKGCPYSCVQTAPHAFAYASSTGTARAISQGHGEDYKVQLA 664

Query: 191 VGQCPRSCIHYVTPSQRIILEELLE 215
           VGQCPRSCIHYVTPSQRIILEELL+
Sbjct: 665 VGQCPRSCIHYVTPSQRIILEELLD 689

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125242|ref|XP_002319537.1| predicted protein [Populus trichocarpa] gi|222857913|gb|EEE95460.1| predicted protein [Populus trichocarpa]

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 152/221 (68%), Positives = 180/221 (81%), Gaps = 8/221 (3%)

Query: 1   MECSCLHGSFLPILPFHKTVISPN-CHNFPSNSTTRRRFPS-----KFTVNCTERTGENA 54
           ME  C + S  PI PF KTV +PN CHNFPS +   R FPS     KF  +C  R  E+ 
Sbjct: 1   MESLCFYSSLPPIPPFQKTVTNPNNCHNFPSKTIPIRLFPSLSTSSKFKPHCLGRAEED- 59

Query: 55  STPPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEIL 114
            +P STSSAY +LG++P CSAA +KAAFRAKVKQ+HPD+N+DG+ SD +IRR+IQAYE+L
Sbjct: 60  -SPLSTSSAYTVLGIKPGCSAAAIKAAFRAKVKQFHPDLNKDGKVSDLMIRRVIQAYEML 118

Query: 115 TEYSRLEIIERECIDPFDYPECEALDVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTA 174
           + +SR EIIEREC+DPF+ PECEA D+FVNEVLCVGKGCPYSCV+ AP AF+Y+SSTGTA
Sbjct: 119 SNFSRPEIIERECLDPFEEPECEAFDIFVNEVLCVGKGCPYSCVQRAPYAFTYASSTGTA 178

Query: 175 RAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRIILEELLE 215
           RA SQGHG+DY+VQLAVGQCPRSCIHYVTPSQRIILEELL+
Sbjct: 179 RATSQGHGEDYQVQLAVGQCPRSCIHYVTPSQRIILEELLD 219

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147798217|emb|CAN60541.1| hypothetical protein VITISV_018290 [Vitis vinifera]

 Score =  290 bits (741), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 149/219 (68%), Positives = 172/219 (78%), Gaps = 6/219 (2%)

Query: 1   MECSCLHGSFLPILPFHKTVISPNCHNFPSNSTTRRRFPSKFT----VNCTERTGENAST 56
           M C  L+ S LPI    K+V + N  NFP+   T   F S  T    VNC +RTGE    
Sbjct: 1   MGCLVLYNSTLPINTVSKSVTNLNGFNFPATFKTSLSFSSSSTSRFTVNCRDRTGEEPKL 60

Query: 57  PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
             S SSAYA+LGV+PSCSAAELKAAFRAKVKQ+HPDVN++G DSD +IR +IQAYE+L+ 
Sbjct: 61  --SDSSAYAVLGVDPSCSAAELKAAFRAKVKQFHPDVNKEGGDSDKMIRLVIQAYELLSC 118

Query: 117 YSRLEIIERECIDPFDYPECEALDVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARA 176
            SR EIIEREC+DPFD PECEA D+FVNEVLCVG GCPYSCV  AP+AF++ SSTGTARA
Sbjct: 119 CSRSEIIERECLDPFDEPECEAFDLFVNEVLCVGNGCPYSCVNKAPHAFTFVSSTGTARA 178

Query: 177 ISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRIILEELLE 215
            SQGHG+DY+VQLAVGQCPRSCIHYVTPSQRI+LEELL+
Sbjct: 179 TSQGHGEDYQVQLAVGQCPRSCIHYVTPSQRIVLEELLD 217

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487742|ref|XP_002280795.2| PREDICTED: uncharacterized protein LOC100263014 [Vitis vinifera] gi|296088328|emb|CBI36773.3| unnamed protein product [Vitis vinifera]

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 149/219 (68%), Positives = 172/219 (78%), Gaps = 6/219 (2%)

Query: 1   MECSCLHGSFLPILPFHKTVISPNCHNFPSNSTTRRRFPSKFT----VNCTERTGENAST 56
           M C  L+ S LPI    K+V + N  NFP+   T   F S  T    VNC +RTGE    
Sbjct: 2   MGCLVLYNSTLPINTVSKSVTNLNGFNFPATFKTSLSFSSSSTSRFTVNCRDRTGEEPKL 61

Query: 57  PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
             S SSAYA+LGV+PSCSA ELKAAFRAKVKQ+HPDVN++G DSD +IR +IQAYE+L+ 
Sbjct: 62  --SDSSAYAVLGVDPSCSAPELKAAFRAKVKQFHPDVNKEGGDSDKMIRLVIQAYELLSC 119

Query: 117 YSRLEIIERECIDPFDYPECEALDVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARA 176
            SR EIIEREC+DPFD PECEA D+FVNEVLCVGKGCPYSCV  AP+AF++ SSTGTARA
Sbjct: 120 CSRSEIIERECLDPFDEPECEAFDLFVNEVLCVGKGCPYSCVNKAPHAFTFVSSTGTARA 179

Query: 177 ISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRIILEELLE 215
            SQGHG+DY+VQLAVGQCPRSCIHYVTPSQRI+LEELL+
Sbjct: 180 TSQGHGEDYQVQLAVGQCPRSCIHYVTPSQRIVLEELLD 218

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449482847|ref|XP_004156421.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g68930-like [Cucumis sativus]

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 128/193 (66%), Positives = 157/193 (81%), Gaps = 4/193 (2%)

Query: 27  NFPSNSTTRRRFPS----KFTVNCTERTGENASTPPSTSSAYAILGVEPSCSAAELKAAF 82
           NFPS S +   FPS    +FT  C +RT    +      +AY +LG++P+CS +ELKAAF
Sbjct: 594 NFPSISKSSILFPSSSTSRFTPICRQRTEGEDTLLSGPMAAYRLLGLDPTCSESELKAAF 653

Query: 83  RAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFDYPECEALDVF 142
           RAKVKQ+HPDVNR+G DSD++IRR+IQAYE+L+ YSR E IEREC+DPF+ PECEA DVF
Sbjct: 654 RAKVKQFHPDVNRNGNDSDSMIRRVIQAYEMLSSYSRTEFIERECLDPFENPECEAFDVF 713

Query: 143 VNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYV 202
           VNE LCVGKGCPYSCV  AP+ F+++SSTGTARA+SQGH +DY++Q+AVGQCPRSCIHYV
Sbjct: 714 VNEFLCVGKGCPYSCVDRAPHVFTFASSTGTARAMSQGHSEDYQLQMAVGQCPRSCIHYV 773

Query: 203 TPSQRIILEELLE 215
           TP QRIILEELL+
Sbjct: 774 TPLQRIILEELLD 786

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442815|ref|XP_004139176.1| PREDICTED: pentatricopeptide repeat-containing protein At3g05340-like [Cucumis sativus]

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 128/193 (66%), Positives = 157/193 (81%), Gaps = 4/193 (2%)

Query: 27  NFPSNSTTRRRFPS----KFTVNCTERTGENASTPPSTSSAYAILGVEPSCSAAELKAAF 82
           NFPS S +   FPS    +FT  C +RT    +      +AY +LG++P+CS +ELKAAF
Sbjct: 599 NFPSISKSSILFPSSSTSRFTPICRQRTEGEDTLLSGPMAAYRLLGLDPTCSESELKAAF 658

Query: 83  RAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFDYPECEALDVF 142
           RAKVKQ+HPDVNR+G DSD++IRR+IQAYE+L+ YSR E IEREC+DPF+ PECEA DVF
Sbjct: 659 RAKVKQFHPDVNRNGNDSDSMIRRVIQAYEMLSSYSRTEFIERECLDPFENPECEAFDVF 718

Query: 143 VNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYV 202
           VNE LCVGKGCPYSCV  AP+ F+++SSTGTARA+SQGH +DY++Q+AVGQCPRSCIHYV
Sbjct: 719 VNEFLCVGKGCPYSCVDRAPHVFTFASSTGTARAMSQGHSEDYQLQMAVGQCPRSCIHYV 778

Query: 203 TPSQRIILEELLE 215
           TP QRIILEELL+
Sbjct: 779 TPLQRIILEELLD 791

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238479656|ref|NP_001154591.1| DnaJ domain-containing protein [Arabidopsis thaliana] gi|332640701|gb|AEE74222.1| DnaJ domain-containing protein [Arabidopsis thaliana]

 Score =  262 bits (669), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 131/184 (71%), Positives = 151/184 (82%), Gaps = 4/184 (2%)

Query: 32  STTRRRFPSKFTVNCTERTGENASTPPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHP 91
           S +R     +F  +C    G+N   P S+SS Y+ILGVEPSCS++ELKAAFRAKVKQYHP
Sbjct: 17  SNSRYSTSQRFIPSCR---GKNREDPLSSSSPYSILGVEPSCSSSELKAAFRAKVKQYHP 73

Query: 92  DVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFDYPECEALDVFVNEVLCVGK 151
           DVN+DG +SD +IRRIIQAYE+LT YSR EIIE EC+DPFD+PECEALDVFVNEVLCVGK
Sbjct: 74  DVNKDGSNSDIMIRRIIQAYEMLTNYSRSEIIEGECLDPFDHPECEALDVFVNEVLCVGK 133

Query: 152 GCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRIILE 211
            C Y C +TA + FS  SS GTARA+SQGHG+DYRVQ AV QCPR+CIHYVTPSQRIILE
Sbjct: 134 RCSYPCFETASHVFSCDSS-GTARAMSQGHGEDYRVQSAVNQCPRNCIHYVTPSQRIILE 192

Query: 212 ELLE 215
           ELL+
Sbjct: 193 ELLD 196

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357512005|ref|XP_003626291.1| Chaperone protein dnaJ [Medicago truncatula] gi|355501306|gb|AES82509.1| Chaperone protein dnaJ [Medicago truncatula]

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 126/196 (64%), Positives = 150/196 (76%), Gaps = 8/196 (4%)

Query: 27  NFPSNSTT----RRRFPSKFTVNCTERTG--ENASTPPSTSSAYAILGVEPSCSAAELKA 80
           NF   +TT     R FP   ++    RT        P STSSAYA+LGV+P CSAAE+KA
Sbjct: 8   NFNLTTTTSMFVNRTFPLSVSLKNKTRTNCRGREDGPLSTSSAYAVLGVQPDCSAAEIKA 67

Query: 81  AFRAKVKQYHPDVNRDGRD--SDALIRRIIQAYEILTEYSRLEIIERECIDPFDYPECEA 138
           AFR+KVKQ+HPD+NRD  +  SD +IRR+IQAY+IL+ Y+  +IIE EC+DPF  PECEA
Sbjct: 68  AFRSKVKQFHPDLNRDENETYSDVMIRRVIQAYQILSNYTPSQIIETECLDPFGRPECEA 127

Query: 139 LDVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSC 198
            D+FVNE LCVGK C  SCV+ AP+AF++ SSTGTARA SQGHG+DY+VQ AVGQCPRSC
Sbjct: 128 FDLFVNEFLCVGKACSNSCVERAPHAFTFVSSTGTARASSQGHGEDYQVQCAVGQCPRSC 187

Query: 199 IHYVTPSQRIILEELL 214
           IHYVTPSQRIILEELL
Sbjct: 188 IHYVTPSQRIILEELL 203

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504050|ref|XP_003520812.1| PREDICTED: pentatricopeptide repeat-containing protein At3g05340-like [Glycine max]

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 115/178 (64%), Positives = 143/178 (80%), Gaps = 6/178 (3%)

Query: 41  KFTVNCTERTGENASTPPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRD- 99
           K   +C+ R   +   P S +S+YA+LG++P CSAA++KAAFR KVKQ+HPD+NRD    
Sbjct: 532 KARASCSLR---DDDAPLSIASSYAVLGLDPHCSAADIKAAFRTKVKQFHPDLNRDANAR 588

Query: 100 --SDALIRRIIQAYEILTEYSRLEIIERECIDPFDYPECEALDVFVNEVLCVGKGCPYSC 157
             SDA+IRR+IQAY IL+  +  E+IE EC+DPFD PECEA D+FVN++LCVGK C  SC
Sbjct: 589 TFSDAMIRRVIQAYRILSNCTPSELIESECLDPFDTPECEAFDLFVNQLLCVGKACSNSC 648

Query: 158 VKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRIILEELLE 215
           V+ AP+AF+Y+SSTGTARA SQGHG DY+VQ AVGQCPRSCIHYVTPSQRI+LEELL+
Sbjct: 649 VERAPHAFTYASSTGTARASSQGHGDDYQVQCAVGQCPRSCIHYVTPSQRILLEELLD 706

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255640444|gb|ACU20509.1| unknown [Glycine max]

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 115/178 (64%), Positives = 143/178 (80%), Gaps = 6/178 (3%)

Query: 41  KFTVNCTERTGENASTPPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRD- 99
           K   +C+ R  +    P S +S+YA+LG++P CSAA++KAAFR KVKQ+HPD+NRD    
Sbjct: 30  KARASCSLRDDD---APLSIASSYAVLGLDPHCSAADIKAAFRTKVKQFHPDLNRDANAR 86

Query: 100 --SDALIRRIIQAYEILTEYSRLEIIERECIDPFDYPECEALDVFVNEVLCVGKGCPYSC 157
             SDA+IRR+IQAY IL+  +  E+IE EC+DPFD PECEA D+FVN++LCVGK C  SC
Sbjct: 87  TFSDAMIRRVIQAYRILSNCTPSELIESECLDPFDTPECEAFDLFVNQLLCVGKACSNSC 146

Query: 158 VKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRIILEELLE 215
           V+ AP+AF+Y+SSTGTARA SQGHG DY+VQ AVGQCPRSCIHYVTPSQRI+LEELL+
Sbjct: 147 VERAPHAFTYASSTGTARASSQGHGDDYQVQCAVGQCPRSCIHYVTPSQRILLEELLD 204

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
TAIR|locus:5019474746	244	AT3G05345 "AT3G05345" [Arabido	0.847	0.75	0.687	4.7e-64
TAIR|locus:2052426	344	AT2G42750 [Arabidopsis thalian	0.689	0.433	0.320	2.4e-14
TAIR|locus:2166968	465	AT5G23240 [Arabidopsis thalian	0.875	0.406	0.281	6.8e-13
UNIPROTKB|Q55980	133	sll0662 "Ferredoxin (Bacterial	0.398	0.646	0.348	9.7e-09
TIGR_CMR|SPO_0044	381	SPO_0044 "chaperone protein Dn	0.287	0.162	0.387	5e-07
TAIR|locus:2030352	126	AT1G72070 [Arabidopsis thalian	0.328	0.563	0.364	2.7e-06
UNIPROTKB|B0CM59	277	DNAJB2 "DnaJ homolog, subfamil	0.287	0.223	0.380	6e-06
TAIR|locus:2140035	447	AT4G39960 [Arabidopsis thalian	0.282	0.136	0.387	7e-06
FB|FBgn0037151	128	CG7130 [Drosophila melanogaste	0.282	0.476	0.322	8e-06
UNIPROTKB|P25686	324	DNAJB2 "DnaJ homolog subfamily	0.287	0.191	0.380	1.2e-05

TAIR|locus:5019474746 AT3G05345 "AT3G05345" [Arabidopsis thaliana (taxid:3702)]

 Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
 Identities = 130/189 (68%), Positives = 149/189 (78%)

Query:    27 NFPSNSTTRRRFPSKFTVNCTERTGENXXXXXXXXXXYAILGVEPSCSAAELKAAFRAKV 86
             +F SNS  R     +F  +C    G+N          Y+ILGVEPSCS++ELKAAFRAKV
Sbjct:    14 SFFSNS--RYSTSQRFIPSCR---GKNREDPLSSSSPYSILGVEPSCSSSELKAAFRAKV 68

Query:    87 KQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFDYPECEALDVFVNEV 146
             KQYHPDVN+DG +SD +IRRIIQAYE+LT YSR EIIE EC+DPFD+PECEALDVFVNEV
Sbjct:    69 KQYHPDVNKDGSNSDIMIRRIIQAYEMLTNYSRSEIIEGECLDPFDHPECEALDVFVNEV 128

Query:   147 LCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQ 206
             LCVGK C Y C +TA + FS  SS GTARA+SQGHG+DYRVQ AV QCPR+CIHYVTPSQ
Sbjct:   129 LCVGKRCSYPCFETASHVFSCDSS-GTARAMSQGHGEDYRVQSAVNQCPRNCIHYVTPSQ 187

Query:   207 RIILEELLE 215
             RIILEELL+
Sbjct:   188 RIILEELLD 196

GO:0008150 "biological_process" evidence=ND

GO:0031072 "heat shock protein binding" evidence=IEA

TAIR|locus:2052426 AT2G42750 [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 2.4e-14, P = 2.4e-14
 Identities = 51/159 (32%), Positives = 76/159 (47%)

Query:    64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE------Y 117
             YA+LG+ P  +  E+K A+   +K  HPD++ +  ++      I   YEIL++      Y
Sbjct:    78 YAVLGLLPDATQEEIKKAYYNCMKSCHPDLSGNDPETTNFCMFINDIYEILSDPVQRMVY 137

Query:   118 SRLEIIERECIDPFDYPECEALDVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAI 177
               +       I+PF         VFV+E  C+G  C  +C   AP+ F      G ARA 
Sbjct:   138 DEIHGYTVTAINPFLDDSTPRDHVFVDEFACIG--CK-NCANVAPDIFQIEEDFGRARAC 194

Query:   178 SQGHGQDYRVQLAVGQCPRSCIHYVTPSQRIILEELLER 216
             +Q    D  VQ AV  CP  CIH  + +Q  +LE+ + R
Sbjct:   195 NQRGNPDL-VQQAVETCPVDCIHQTSAAQLSLLEDEMRR 232

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

TAIR|locus:2166968 AT5G23240 [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 6.8e-13, P = 6.8e-13
 Identities = 62/220 (28%), Positives = 102/220 (46%)

Query:    16 FHKTVISPNCHNFPSNSTTRR---RFPSKFTVNCTERTGENXXXXXXXXXXYAILGVEPS 72
             F  T + P+   +P +++ +    R P KF    T     +          Y +LG++ S
Sbjct:     6 FSPTTLPPSTATWPCSTSQKLITVRSPLKFKCRAT-----SSSSSITDFDLYDLLGIDRS 60

Query:    73 CSAAELKAAFRAKVKQYHPDVNRD-GRDSDALIRRIIQAYEILT----------EYSRLE 121
                +++K+A+RA  K+ HPD+  D G D  A+I  + +AY++L+          E ++LE
Sbjct:    61 SDKSQIKSAYRALQKRCHPDIAGDPGHDM-AII--LNEAYQLLSDPISRQAYDKEQAKLE 117

Query:   122 IIERECIDPFDY-----PECEALDVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARA 176
              +      P  Y     PE E    FV+EV CVG  C   C   A   F+  ++ G AR 
Sbjct:   118 ELRGYTGKPI-YSVWCGPETEQRAAFVDEVKCVG--C-LKCALCAEKTFAIETAYGRARV 173

Query:   177 ISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRIILEELLER 216
             ++Q    + +++ A+  CP  CI  V  S    LE L+ +
Sbjct:   174 VAQWADPESKIKEAIEACPVDCISMVERSDLAPLEFLMSK 213

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

UNIPROTKB|Q55980 sll0662 "Ferredoxin (Bacterial type ferredoxin family)" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 31/89 (34%), Positives = 45/89 (50%)

Query:   124 ERECIDPFDYPECEALDVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQ 183
             +R  ++P    E     V+V+EV C+G  C  +C   APN F+     G +RA SQ    
Sbjct:    29 DRSGLEPELGGELRERGVYVDEVTCIG--CK-NCAHVAPNTFTIEQEHGRSRAFSQNGDD 85

Query:   184 DYRVQLAVGQCPRSCIHYVTPSQRIILEE 212
             +  +Q A+  CP  CIH+V   +   LEE
Sbjct:    86 EAVIQEAIDTCPVDCIHWVPYDELKHLEE 114

GO:0005515 "protein binding" evidence=IPI

TIGR_CMR|SPO_0044 SPO_0044 "chaperone protein DnaJ" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 135 (52.6 bits), Expect = 5.0e-07, P = 5.0e-07
 Identities = 24/62 (38%), Positives = 39/62 (62%)

Query:    64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
             Y +LGV    SA E+K A+R K K+ HPD N+D  D+++L + + +AYE+L +  +    
Sbjct:     7 YDVLGVSKGASADEIKKAYRGKAKELHPDRNKDNPDAESLFKEVNEAYEVLKDAEKKAAY 66

Query:   124 ER 125
             +R
Sbjct:    67 DR 68

GO:0009408 "response to heat" evidence=ISS

TAIR|locus:2030352 AT1G72070 [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 2.7e-06, P = 2.7e-06
 Identities = 27/74 (36%), Positives = 40/74 (54%)

Query:    64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
             Y +LG+ P  S  E+K AF+    +YHPDV++ G+D D   + I  AYE L +  + E  
Sbjct:    41 YTVLGLTPLASQTEVKRAFKRLALKYHPDVHK-GQDKD--FKEIKSAYECLMQKFKKEEE 97

Query:   124 ERECIDPFDYPECE 137
             E E  +  +  E E
Sbjct:    98 EMEITEMGEIDEWE 111

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

UNIPROTKB|B0CM59 DNAJB2 "DnaJ homolog, subfamily B, member 2, isoform 1 (Predicted)" [Papio anubis (taxid:9555)]

 Score = 121 (47.7 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
 Identities = 24/63 (38%), Positives = 40/63 (63%)

Query:    64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRD-SDALIRRIIQAYEILTEYSRLEI 122
             Y IL V  S SA ++K A+R K  Q+HPD N D ++ ++   + + +AYE+L++  + EI
Sbjct:     5 YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI 64

Query:   123 IER 125
              +R
Sbjct:    65 YDR 67

GO:0008285 "negative regulation of cell proliferation" evidence=ISS

GO:0030308 "negative regulation of cell growth" evidence=ISS

TAIR|locus:2140035 AT4G39960 [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 24/62 (38%), Positives = 39/62 (62%)

Query:    64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
             Y++LGV  + + AE+K+A+R   + YHPDVN+D    D   + I  AYEIL++  +  + 
Sbjct:    87 YSVLGVSKNATKAEIKSAYRKLARSYHPDVNKDAGAEDKF-KEISNAYEILSDDEKRSLY 145

Query:   124 ER 125
             +R
Sbjct:   146 DR 147

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

FB|FBgn0037151 CG7130 [Drosophila melanogaster (taxid:7227)]

 Score = 106 (42.4 bits), Expect = 8.0e-06, P = 8.0e-06
 Identities = 20/62 (32%), Positives = 37/62 (59%)

Query:    64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
             Y ILG+E + S+ ++K  +R    +YHPD N D   ++   R ++ A+E+L +  + EI 
Sbjct:     6 YKILGIERNASSEDVKKGYRRMALRYHPDKN-DHPQAEEQFREVVAAFEVLFDKEKREIY 64

Query:   124 ER 125
             ++
Sbjct:    65 DQ 66

GO:0009408 "response to heat" evidence=ISS

UNIPROTKB|P25686 DNAJB2 "DnaJ homolog subfamily B member 2" [Homo sapiens (taxid:9606)]

 Score = 121 (47.7 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
 Identities = 24/63 (38%), Positives = 40/63 (63%)

Query:    64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRD-SDALIRRIIQAYEILTEYSRLEI 122
             Y IL V  S SA ++K A+R K  Q+HPD N D ++ ++   + + +AYE+L++  + EI
Sbjct:     5 YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI 64

Query:   123 IER 125
              +R
Sbjct:    65 YDR 67

GO:0008285 "negative regulation of cell proliferation" evidence=IGI

GO:0030308 "negative regulation of cell growth" evidence=IGI

GO:0051082 "unfolded protein binding" evidence=TAS

GO:0006986 "response to unfolded protein" evidence=TAS

GO:0006457 "protein folding" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0000502 "proteasome complex" evidence=IDA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IDA

GO:0030433 "ER-associated protein catabolic process" evidence=IDA

GO:0016234 "inclusion body" evidence=IDA

GO:0030544 "Hsp70 protein binding" evidence=IPI

GO:0031593 "polyubiquitin binding" evidence=IDA

GO:0070628 "proteasome binding" evidence=IDA

GO:0090086 "negative regulation of protein deubiquitination" evidence=IDA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0090084 "negative regulation of inclusion body assembly" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00130192 hypothetical protein (266 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	216
pfam00226	63	pfam00226, DnaJ, DnaJ domain	7e-16
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	1e-15
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	3e-15
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	2e-11
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	2e-10
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	2e-09
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	2e-09
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	7e-09
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	9e-09
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	3e-08
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	4e-08
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	4e-08
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	8e-08
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	2e-07
pfam13459	60	pfam13459, Fer4_15, 4Fe-4S single cluster domain	2e-07
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	2e-07
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	3e-07
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	3e-07
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	3e-07
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	3e-07
PRK09430	267	PRK09430, djlA, Dna-J like membrane chaperone prot	6e-07
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	8e-07
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	1e-06
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	1e-06
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	1e-06
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	1e-06
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	3e-06
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	3e-06
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	7e-06
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	1e-05
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	2e-05
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	3e-05
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	4e-05
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	8e-05
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	9e-05
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	7e-04
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	0.001
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	0.004

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 68.7 bits (169), Expect = 7e-16
 Identities = 20/52 (38%), Positives = 29/52 (55%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT 115
           Y ILGV    S  E+K A+R    +YHPD N     ++   + I +AYE+L+
Sbjct: 3   YEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLS 54

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 68.0 bits (167), Expect = 1e-15
 Identities = 22/52 (42%), Positives = 32/52 (61%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT 115
           Y ILGV P  S  E+K A+R    +YHPD N D  +++   + I +AYE+L+
Sbjct: 3   YDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLS 54

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 67.3 bits (165), Expect = 3e-15
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 62  SAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG-RDSDALIRRIIQAYEILT 115
             Y ILGV    S  E+K A+R    +YHPD N     +++   + I +AYE+L+
Sbjct: 2   DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLS 56

Length = 60

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 61.5 bits (150), Expect = 2e-11
 Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT 115
           Y ILGV    S  E+K A+R   K+YHPD N+D ++++   + I +AYE+L+
Sbjct: 3   YEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD-KEAEEKFKEINEAYEVLS 53

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 21/52 (40%), Positives = 32/52 (61%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT 115
           Y ILGV    S  E+K A+R   K+YHPD N   ++++   + I +AYE+L+
Sbjct: 7   YEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLS 58

Length = 371

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 56.3 bits (136), Expect = 2e-09
 Identities = 21/53 (39%), Positives = 36/53 (67%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
           Y ILGV+ + +  E+K A+R   K+YHPD+N   ++++   + I +AYEIL++
Sbjct: 8   YEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSD 60

Length = 386

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score = 56.3 bits (137), Expect = 2e-09
 Identities = 19/52 (36%), Positives = 32/52 (61%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT 115
           Y +LGV  + S  E+K A+R    +YHPD N   ++++   + I +AYE+L+
Sbjct: 7   YEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLS 58

Length = 371

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 54.3 bits (131), Expect = 7e-09
 Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 1/53 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
           Y +LGV  S S  E+K A+R   K+YHPD+N++   +D   + I +AYE+L++
Sbjct: 7   YEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE-EGADEKFKEISEAYEVLSD 58

Length = 376

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 54.1 bits (130), Expect = 9e-09
 Identities = 20/56 (35%), Positives = 39/56 (69%), Gaps = 1/56 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSR 119
           YAI+GV+P+     +K A+R   ++YHPDV+++  D++A  + + +A+E+L++  R
Sbjct: 7   YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEP-DAEARFKEVAEAWEVLSDEQR 61

Length = 306

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 52.7 bits (127), Expect = 3e-08
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
           Y ILGV       ELK A+R   ++YHPDVN++    D   + I +AYE+L++
Sbjct: 6   YEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRF-KEINRAYEVLSD 57

Length = 374

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 51.7 bits (123), Expect = 4e-08
 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRD-SDALIRRIIQAYEILT-EYSRLE 121
           Y ILGV P+ S  E+K A+R    +YHPD N      ++   + I +AYEIL+    R E
Sbjct: 9   YEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAE 68

Query: 122 IIERECIDPF 131
             +    + F
Sbjct: 69  YDKIGADNYF 78

Length = 237

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
           Y +LGV  + S AE+K A+R   ++ HPDVN D  ++    + I  AYE+L++
Sbjct: 6   YGLLGVSRNASDAEIKRAYRKLARELHPDVNPD-EEAQEKFKEISVAYEVLSD 57

Length = 378

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 51.3 bits (123), Expect = 8e-08
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
           Y ILGV    S  E+K ++R    +YHPD N   ++++ L +   +AYE+L++  +  I 
Sbjct: 7   YEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIY 66

Query: 124 ER 125
           ++
Sbjct: 67  DQ 68

Length = 366

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 19/52 (36%), Positives = 32/52 (61%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT 115
           Y +LGV  S    E+K A+R    +YHPD N D ++++   + + +AYE+L+
Sbjct: 6   YEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLS 57

Length = 397

>gnl|CDD|222145 pfam13459, Fer4_15, 4Fe-4S single cluster domain

 Score = 46.1 bits (110), Expect = 2e-07
 Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 8/64 (12%)

Query: 142 FVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHG----QDYRVQLAVGQCPRS 197
           FV+   C+G G    CV  AP+ F      G AR I          +   Q A   CP  
Sbjct: 1   FVDRDTCIGCGL---CVALAPDVFELDE-DGKARVILDEGEVPDDLEEDAQEAADACPVD 56

Query: 198 CIHY 201
            IH 
Sbjct: 57  AIHV 60

Length = 60

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 18/53 (33%), Positives = 33/53 (62%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
           Y +LGV  + +  E+K A+R K  QYHPD N   ++++   +   +AY++L++
Sbjct: 8   YEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSD 60

Length = 386

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score = 50.0 bits (119), Expect = 3e-07
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
           Y ILGV  + S A+LK A+    KQYHPD   D +D++   + I  AY++L +  +    
Sbjct: 6   YQILGVSKTASQADLKKAYLKLAKQYHPD-TTDAKDAEKKFKEINAAYDVLKDEQKRAAY 64

Query: 124 ERECIDPFDYPE 135
           +R   D F   +
Sbjct: 65  DRFGHDAFQNQQ 76

Length = 372

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 49.8 bits (119), Expect = 3e-07
 Identities = 21/62 (33%), Positives = 36/62 (58%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
           Y ILGV  + S  E+K A+R    +YHPD N    +++   + + +AYE+L++  + E  
Sbjct: 4   YTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESY 63

Query: 124 ER 125
           +R
Sbjct: 64  DR 65

Length = 391

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 49.5 bits (118), Expect = 3e-07
 Identities = 19/54 (35%), Positives = 36/54 (66%), Gaps = 1/54 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGR-DSDALIRRIIQAYEILTE 116
           Y ILGV+ + S  ++K AFR   K++HPD++   + +++   + I +AYE+L++
Sbjct: 6   YKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSD 59

Length = 365

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score = 49.6 bits (118), Expect = 3e-07
 Identities = 18/53 (33%), Positives = 33/53 (62%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
           Y ILG+    S  E+K A+R    +YHPD N+  ++++++ +   +AYE+L +
Sbjct: 6   YEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLID 58

Length = 365

>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional

 Score = 48.3 bits (116), Expect = 6e-07
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 53  NASTPPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPD 92
            A   P+   AY +LGV  S    E+K A+R  + ++HPD
Sbjct: 192 QAQRGPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPD 231

Length = 267

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 48.3 bits (115), Expect = 8e-07
 Identities = 18/56 (32%), Positives = 34/56 (60%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSR 119
           Y +LGV    + AE+K A+R   ++YHPD N+    ++   + I +AY++L++  +
Sbjct: 12  YKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKK 67

Length = 389

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 47.6 bits (113), Expect = 1e-06
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
           YAILGV  + S  E+K AF+   ++YHPDVN+    ++   + I +AY +L++  +  I 
Sbjct: 7   YAILGVPKNASQDEIKKAFKKLARKYHPDVNKS-PGAEEKFKEINEAYTVLSDPEKRRIY 65

Query: 124 ER 125
           + 
Sbjct: 66  DT 67

Length = 291

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 47.7 bits (113), Expect = 1e-06
 Identities = 23/58 (39%), Positives = 35/58 (60%)

Query: 59  STSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
           S  S Y ILGV  S +  E+K+A+R    +YHPD N+  ++S+   +   +AYEIL +
Sbjct: 2   SERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRD 59

Length = 372

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 47.9 bits (113), Expect = 1e-06
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT 115
           Y +LG++      E+K AFR   K+YHPD N+   D+ ++   I +A ++L+
Sbjct: 5   YEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAP-DAASIFAEINEANDVLS 55

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 19/53 (35%), Positives = 34/53 (64%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
           Y +LG+E   S  E+K AFR    +YHPD N+  ++++   + I +AY++L++
Sbjct: 7   YEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSD 59

Length = 380

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 46.7 bits (111), Expect = 3e-06
 Identities = 20/51 (39%), Positives = 29/51 (56%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEIL 114
           Y +LGV    S  E+K A+R    QYHPD N D  +++   +   +AYE+L
Sbjct: 7   YEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVL 57

Length = 373

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score = 46.9 bits (111), Expect = 3e-06
 Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 59  STSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
           S    Y +LGV+ + S  E+K A+R   ++YHPDVN+   D++   + + +AY+ L++
Sbjct: 2   SKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA-PDAEDKFKEVKEAYDTLSD 58

Length = 371

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 45.5 bits (108), Expect = 7e-06
 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
           Y  LGV    S  E+K A+R   K+YHPD+N++   ++   + + +AYE L++
Sbjct: 7   YDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEP-GAEEKYKEVQEAYETLSD 58

Length = 380

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 18/53 (33%), Positives = 35/53 (66%), Gaps = 1/53 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
           Y ILGV  + +  E+K A+R   ++YHPD N++  +++   + I +AY++L++
Sbjct: 6   YEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSD 57

Length = 382

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 19/54 (35%), Positives = 36/54 (66%), Gaps = 1/54 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGR-DSDALIRRIIQAYEILTE 116
           Y ILGV  + +  E+K A++  VK++HPD + + R +++   + I +AYE+L++
Sbjct: 7   YEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSD 60

Length = 369

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 59  STSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
           +T   Y ILG+    S  ++K A+R    +YHPD N++  D++   + I +AY +L++
Sbjct: 3   TTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEP-DAEEKFKEISEAYAVLSD 59

Length = 377

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 43.3 bits (102), Expect = 4e-05
 Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE------Y 117
           Y +LGV  + SA E+K+A+R    +YHPD N++   ++    +I +AY +L++      Y
Sbjct: 5   YELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKF-AQINEAYAVLSDAEKRAHY 63

Query: 118 SRLEIIERECI---DPFDYPECEALDVF 142
            R        +   DPF     + +D+F
Sbjct: 64  DRFGTAPGAGMPGGDPFGGMGFDPMDIF 91

Length = 371

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 42.2 bits (99), Expect = 8e-05
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEIL 114
           Y +LGV  + S  E++ A+R   KQYHPD+N+   D+   +  I +A ++L
Sbjct: 7   YEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSP-DAHDKMVEINEAADVL 56

Length = 372

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 42.1 bits (99), Expect = 9e-05
 Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
           Y +LGV+ +    E+K A+R   ++YHPDV+ +   ++   + I +AY +L++
Sbjct: 8   YEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-EGAEEKFKEISEAYAVLSD 59

Length = 378

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 16/53 (30%), Positives = 30/53 (56%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
           Y  LGV    SA E+K A+R   ++ HPD N     ++   + + +A+++L++
Sbjct: 12  YKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSD 64

Length = 392

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 6/94 (6%)

Query: 51  GENASTPPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQA 110
           G            Y +L +   C+ +E+K A+R    ++HPD    G D +   + I +A
Sbjct: 18  GGRRKREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPD---KGGDPEKF-KEISRA 73

Query: 111 YEILTEYSRLEIIERECIDPFD--YPECEALDVF 142
           YE+L++  + +I +    +  +      +A D+F
Sbjct: 74  YEVLSDPEKRKIYDEYGEEGLEGGEQPADASDLF 107

Length = 421

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score = 37.0 bits (85), Expect = 0.004
 Identities = 18/64 (28%), Positives = 35/64 (54%)

Query: 62  SAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLE 121
           S Y IL VE   +   +K ++R    +YHPD N   ++++   + I +AY +L++  +  
Sbjct: 4   SYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRA 63

Query: 122 IIER 125
           + +R
Sbjct: 64  LYDR 67

Length = 369

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	216
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.93
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	99.9
PRK14288	369	chaperone protein DnaJ; Provisional	99.85
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.85
PRK14296	372	chaperone protein DnaJ; Provisional	99.84
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	99.83
PRK14286	372	chaperone protein DnaJ; Provisional	99.83
PRK14279	392	chaperone protein DnaJ; Provisional	99.83
PRK14282	369	chaperone protein DnaJ; Provisional	99.82
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.81
PRK14294	366	chaperone protein DnaJ; Provisional	99.81
PRK14287	371	chaperone protein DnaJ; Provisional	99.81
PRK14277	386	chaperone protein DnaJ; Provisional	99.81
PRK14285	365	chaperone protein DnaJ; Provisional	99.81
PRK14297	380	chaperone protein DnaJ; Provisional	99.81
PRK14301	373	chaperone protein DnaJ; Provisional	99.8
PRK14276	380	chaperone protein DnaJ; Provisional	99.8
PRK14295	389	chaperone protein DnaJ; Provisional	99.8
PRK14283	378	chaperone protein DnaJ; Provisional	99.8
PRK14299	291	chaperone protein DnaJ; Provisional	99.8
PRK14284	391	chaperone protein DnaJ; Provisional	99.79
PRK10767	371	chaperone protein DnaJ; Provisional	99.79
PRK14298	377	chaperone protein DnaJ; Provisional	99.79
PRK14291	382	chaperone protein DnaJ; Provisional	99.79
PRK14280	376	chaperone protein DnaJ; Provisional	99.79
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.79
PRK14281	397	chaperone protein DnaJ; Provisional	99.78
PRK14278	378	chaperone protein DnaJ; Provisional	99.78
PRK14290	365	chaperone protein DnaJ; Provisional	99.76
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	99.76
PRK14289	386	chaperone protein DnaJ; Provisional	99.76
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.76
PRK14300	372	chaperone protein DnaJ; Provisional	99.76
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.75
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.75
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.74
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.74
PRK14292	371	chaperone protein DnaJ; Provisional	99.74
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.74
PRK14293	374	chaperone protein DnaJ; Provisional	99.73
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.71
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.69
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.69
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.69
PHA03102	153	Small T antigen; Reviewed	99.66
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.64
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.63
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.62
PRK05014	171	hscB co-chaperone HscB; Provisional	99.57
PRK01356	166	hscB co-chaperone HscB; Provisional	99.55
PRK00294	173	hscB co-chaperone HscB; Provisional	99.54
PRK03578	176	hscB co-chaperone HscB; Provisional	99.54
PTZ00100	116	DnaJ chaperone protein; Provisional	99.49
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.46
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.43
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.41
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.41
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.38
PRK01773	173	hscB co-chaperone HscB; Provisional	99.3
PHA02624	647	large T antigen; Provisional	99.29
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.27
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	99.13
PF13459	65	Fer4_15: 4Fe-4S single cluster domain	99.0
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	98.99
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	98.96
PF13370	58	Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A	98.94
COG1141	68	Fer Ferredoxin [Energy production and conversion]	98.89
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	98.63
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.56
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	98.42
PF06902	64	Fer4_19: Divergent 4Fe-4S mono-cluster; InterPro:	98.19
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	97.88
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	97.28
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	96.97
KOG0431	453	consensus Auxilin-like protein and related protein	96.94
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	96.78
COG3592	74	Uncharacterized conserved protein [Function unknow	96.33
PF13446	62	RPT: A repeated domain in UCH-protein	92.23
PF11833	194	DUF3353: Protein of unknown function (DUF3353); In	89.12
TIGR03048	80	PS_I_psaC photosystem I iron-sulfur protein PsaC.	89.06
CHL00065	81	psaC photosystem I subunit VII	88.27
KOG0724	335	consensus Zuotin and related molecular chaperones	86.76
PLN00071	81	photosystem I subunit VII; Provisional	86.62
PF14687	112	DUF4460: Domain of unknown function (DUF4460)	85.4
PF13187	55	Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_	84.37
PRK08348	120	NADH-plastoquinone oxidoreductase subunit; Provisi	83.69
PRK09626	103	oorD 2-oxoglutarate-acceptor oxidoreductase subuni	83.48
PRK09623	105	vorD 2-ketoisovalerate ferredoxin oxidoreductase s	83.41
PRK07569	234	bidirectional hydrogenase complex protein HoxU; Va	83.13
PRK02651	81	photosystem I subunit VII; Provisional	82.82
COG2221	317	DsrA Dissimilatory sulfite reductase (desulfovirid	80.99
PF14697	59	Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE	80.75
COG1142	165	HycB Fe-S-cluster-containing hydrogenase component	80.54

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.7e-26  Score=202.70  Aligned_cols=75  Identities=29%  Similarity=0.505  Sum_probs=70.8

Q ss_pred             CCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCCC
Q 027943           58 PSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFD  132 (216)
Q Consensus        58 ~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~  132 (216)
                      +..+|||+||||+++||.+|||+|||+||++||||+++.+++|+++|++|++||+||+||++|+.||++|..++.
T Consensus         1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~   75 (371)
T COG0484           1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK   75 (371)
T ss_pred             CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence            356889999999999999999999999999999999998788999999999999999999999999999988765

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=3.1e-24  Score=184.50  Aligned_cols=75  Identities=27%  Similarity=0.436  Sum_probs=70.5

Q ss_pred             CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943           57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (216)
Q Consensus        57 ~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~  131 (216)
                      ....+|||+||||+++|+.+|||+||||||++||||||++++.|.+.|++|+.||+||+||.+|+.||.+|..+.
T Consensus        12 v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL   86 (336)
T KOG0713|consen   12 VLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGL   86 (336)
T ss_pred             hhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhh
Confidence            456789999999999999999999999999999999999999999999999999999999999999999885544

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=9.7e-22  Score=175.27  Aligned_cols=71  Identities=25%  Similarity=0.445  Sum_probs=66.5

Q ss_pred             cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943           61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (216)
Q Consensus        61 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~  131 (216)
                      .|||+||||+++||.+|||+|||+||++||||+++.+..++++|++|++||+||+|+.+|+.||++|..++
T Consensus         3 ~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~   73 (369)
T PRK14288          3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGL   73 (369)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhccccc
Confidence            68999999999999999999999999999999998666789999999999999999999999999986544

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=1.2e-21  Score=163.87  Aligned_cols=97  Identities=22%  Similarity=0.317  Sum_probs=79.9

Q ss_pred             CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCC------C
Q 027943           57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECID------P  130 (216)
Q Consensus        57 ~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~------~  130 (216)
                      .....++|+||||+++|+.++|||+||+|+++||||++++++++..+|++||+||+||+|+.+|..||.+|.-      .
T Consensus        27 ~~~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~l~e~  106 (279)
T KOG0716|consen   27 DVIRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLKLAEQ  106 (279)
T ss_pred             ccchhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHHHHHh
Confidence            3447889999999999999999999999999999999999888999999999999999999999999998632      2


Q ss_pred             C-----------CCcchhhhhhhhcccccccCCC
Q 027943          131 F-----------DYPECEALDVFVNEVLCVGKGC  153 (216)
Q Consensus       131 ~-----------~~~~~~~~~~fvde~~c~g~Gc  153 (216)
                      |           .++......+++|...|.+.+|
T Consensus       107 fg~d~~~~~~v~~~~~~~~~~a~~dll~g~~~c~  140 (279)
T KOG0716|consen  107 FGEDSKIIYFVFSSPWIKATAACFDLLTGQRHCL  140 (279)
T ss_pred             hcccCcceEEEecchhhhHHhhhhhhhhcchhhh
Confidence            2           2344444556677766655333

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=2.5e-21  Score=172.73  Aligned_cols=71  Identities=28%  Similarity=0.495  Sum_probs=65.7

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (216)
Q Consensus        60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~  131 (216)
                      ..|||+||||+++|+.+|||+|||+|+++||||++++ ..++++|++|++||+||+||.+|+.||++|..++
T Consensus         3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~-~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~   73 (372)
T PRK14296          3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS-PDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAF   73 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-chHHHHHHHHHHHHHHhcCHHHhhhhhhccchhh
Confidence            4689999999999999999999999999999999874 5688999999999999999999999999886543

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=5.6e-21  Score=165.98  Aligned_cols=69  Identities=36%  Similarity=0.606  Sum_probs=64.4

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (216)
Q Consensus        60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~  131 (216)
                      .+.+|+||||+++||.+|||+|||+|+++||||||++   +.++|++|.+||+||+||++|++||++|.++.
T Consensus         3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~   71 (337)
T KOG0712|consen    3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYGEEGL   71 (337)
T ss_pred             ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhh
Confidence            4579999999999999999999999999999999877   68999999999999999999999999986654

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=6.3e-21  Score=170.22  Aligned_cols=71  Identities=31%  Similarity=0.509  Sum_probs=66.3

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCC
Q 027943           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP  130 (216)
Q Consensus        60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~  130 (216)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.+.+++++|++|++||+||+||.+|+.||++|..+
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g   73 (372)
T PRK14286          3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAG   73 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchh
Confidence            46899999999999999999999999999999999876678999999999999999999999999988654

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=9e-21  Score=170.27  Aligned_cols=69  Identities=23%  Similarity=0.404  Sum_probs=65.1

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCC
Q 027943           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECI  128 (216)
Q Consensus        60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~  128 (216)
                      .+|||+||||+++|+.+|||+|||+|+++||||+++.+..++++|++|++||+||+||.+|+.||++|.
T Consensus         8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~   76 (392)
T PRK14279          8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRR   76 (392)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence            478999999999999999999999999999999998766789999999999999999999999999864

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=2.7e-20  Score=166.06  Aligned_cols=71  Identities=27%  Similarity=0.520  Sum_probs=65.4

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-CcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCC
Q 027943           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG-RDSDALIRRIIQAYEILTEYSRLEIIERECIDP  130 (216)
Q Consensus        60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~  130 (216)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.+ ..++++|++|++||++|+||.+|+.||++|..+
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~   74 (369)
T PRK14282          3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVG   74 (369)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccc
Confidence            46899999999999999999999999999999998754 567899999999999999999999999988654

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.81  E-value=3.4e-20  Score=167.53  Aligned_cols=71  Identities=24%  Similarity=0.459  Sum_probs=64.1

Q ss_pred             CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943           57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (216)
Q Consensus        57 ~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~  131 (216)
                      .+...+||+||||+++||.+|||+|||+|+++||||++++    .++|++|++||+||+||.+|+.||++|..++
T Consensus        24 ~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~   94 (421)
T PTZ00037         24 EVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIYDEYGEEGL   94 (421)
T ss_pred             cccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhccHHHHHHHhhhcchhc
Confidence            3445789999999999999999999999999999999752    5899999999999999999999999886554

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=4.4e-20  Score=164.56  Aligned_cols=73  Identities=27%  Similarity=0.517  Sum_probs=67.3

Q ss_pred             CccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943           59 STSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (216)
Q Consensus        59 ~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~  131 (216)
                      ...|||+||||+++|+.+|||+|||+|+++||||+++.+..++++|++|++||+||+||.+|+.||++|..++
T Consensus         2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~   74 (366)
T PRK14294          2 VKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGL   74 (366)
T ss_pred             CCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccc
Confidence            3468999999999999999999999999999999998766788999999999999999999999999886544

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=4.8e-20  Score=164.51  Aligned_cols=70  Identities=27%  Similarity=0.519  Sum_probs=64.8

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCC
Q 027943           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP  130 (216)
Q Consensus        60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~  130 (216)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++. .+++++|++|++||++|+||.+|+.||++|..+
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~   72 (371)
T PRK14287          3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA-PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTD   72 (371)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcc
Confidence            4689999999999999999999999999999999874 567899999999999999999999999988654

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=4.8e-20  Score=165.36  Aligned_cols=72  Identities=31%  Similarity=0.563  Sum_probs=66.8

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (216)
Q Consensus        60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~  131 (216)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.+..++++|++|++||+||+|+.+|+.||.+|..++
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~   75 (386)
T PRK14277          4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAF   75 (386)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccc
Confidence            368999999999999999999999999999999998766788999999999999999999999999886554

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=4.8e-20  Score=164.20  Aligned_cols=71  Identities=28%  Similarity=0.551  Sum_probs=66.2

Q ss_pred             cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943           61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (216)
Q Consensus        61 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~  131 (216)
                      .|||+||||+++|+.+|||+|||+|+++||||+++.+..+.++|++|++||++|+|+.+|+.||++|..++
T Consensus         3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~   73 (365)
T PRK14285          3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAF   73 (365)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchh
Confidence            68999999999999999999999999999999998766788999999999999999999999999886543

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=4.5e-20  Score=165.27  Aligned_cols=72  Identities=28%  Similarity=0.540  Sum_probs=66.7

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (216)
Q Consensus        60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~  131 (216)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.+..++++|++|++||++|+||.+|+.||++|..++
T Consensus         3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~   74 (380)
T PRK14297          3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADF   74 (380)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccc
Confidence            368999999999999999999999999999999998766789999999999999999999999999886543

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.80  E-value=5.5e-20  Score=164.25  Aligned_cols=72  Identities=29%  Similarity=0.467  Sum_probs=66.6

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (216)
Q Consensus        60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~  131 (216)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.+.+++++|++|++||+||+||.+|+.||++|..++
T Consensus         3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~   74 (373)
T PRK14301          3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGV   74 (373)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhcccccc
Confidence            468999999999999999999999999999999998766788999999999999999999999999876543

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.80  E-value=8.4e-20  Score=163.47  Aligned_cols=71  Identities=27%  Similarity=0.473  Sum_probs=65.5

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (216)
Q Consensus        60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~  131 (216)
                      ..|||+||||+++|+.+|||+|||+|+++||||++++ ..++++|++|++||++|+||.+|+.||++|..++
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~   73 (380)
T PRK14276          3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE-PGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGA   73 (380)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccc
Confidence            4689999999999999999999999999999999875 5688999999999999999999999999886543

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.80  E-value=8.9e-20  Score=163.69  Aligned_cols=72  Identities=26%  Similarity=0.520  Sum_probs=66.7

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHh----hCCCCC
Q 027943           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIER----ECIDPF  131 (216)
Q Consensus        60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~----~g~~~~  131 (216)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.+..++++|++|++||+||+||.+|+.||+    +|..++
T Consensus         8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~   83 (389)
T PRK14295          8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGF   83 (389)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhccccc
Confidence            468999999999999999999999999999999998766789999999999999999999999998    776554

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.80  E-value=8.7e-20  Score=163.31  Aligned_cols=71  Identities=24%  Similarity=0.502  Sum_probs=65.8

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (216)
Q Consensus        60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~  131 (216)
                      ..|||+||||+++|+.+|||+|||+|+++||||++++ ..++++|++|++||++|+|+.+|+.||++|..++
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~   74 (378)
T PRK14283          4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGM   74 (378)
T ss_pred             cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhchhHHHHHHhhhccccc
Confidence            5689999999999999999999999999999999875 5689999999999999999999999999886543

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.80  E-value=1.2e-19  Score=157.10  Aligned_cols=69  Identities=32%  Similarity=0.552  Sum_probs=64.3

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCC
Q 027943           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECID  129 (216)
Q Consensus        60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~  129 (216)
                      ..|||+||||+++||.+|||+|||+|+++||||++++ ..++++|++|++||++|+|+.+|+.||++|..
T Consensus         3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~   71 (291)
T PRK14299          3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS-PGAEEKFKEINEAYTVLSDPEKRRIYDTYGTT   71 (291)
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCc
Confidence            4689999999999999999999999999999999874 56889999999999999999999999998764

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.79  E-value=1.2e-19  Score=163.08  Aligned_cols=71  Identities=31%  Similarity=0.511  Sum_probs=66.1

Q ss_pred             cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943           61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (216)
Q Consensus        61 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~  131 (216)
                      .|||+||||+++|+.++||+|||+|+++||||+++++..++++|++|++||++|+|+.+|+.||++|..++
T Consensus         1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~   71 (391)
T PRK14284          1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGP   71 (391)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcccccc
Confidence            37999999999999999999999999999999998767789999999999999999999999999886543

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.79  E-value=1.3e-19  Score=161.92  Aligned_cols=72  Identities=28%  Similarity=0.521  Sum_probs=66.6

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (216)
Q Consensus        60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~  131 (216)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.+..++++|++|++||++|+|+.+|+.||++|..++
T Consensus         3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~   74 (371)
T PRK10767          3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAF   74 (371)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcccccc
Confidence            468999999999999999999999999999999998666688999999999999999999999999886544

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.79  E-value=1.3e-19  Score=162.06  Aligned_cols=71  Identities=28%  Similarity=0.512  Sum_probs=65.3

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (216)
Q Consensus        60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~  131 (216)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++. ..++++|++|++||++|+||.+|+.||++|..++
T Consensus         4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~   74 (377)
T PRK14298          4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE-PDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGI   74 (377)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC-hhHHHHHHHHHHHHHHhcchHhhhhhhhcCcccc
Confidence            3689999999999999999999999999999999875 5678999999999999999999999999886544

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.79  E-value=1.6e-19  Score=161.86  Aligned_cols=71  Identities=27%  Similarity=0.573  Sum_probs=65.6

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (216)
Q Consensus        60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~  131 (216)
                      ..|||+||||+++|+.++||+|||+|+++||||+++. ..++++|++|++||++|+||.+|+.||++|..++
T Consensus         2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~   72 (382)
T PRK14291          2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAF   72 (382)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhcCHHHHHHHhhhccccc
Confidence            3689999999999999999999999999999999876 5678999999999999999999999999886654

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.79  E-value=1.9e-19  Score=160.96  Aligned_cols=70  Identities=31%  Similarity=0.547  Sum_probs=64.9

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCC
Q 027943           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP  130 (216)
Q Consensus        60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~  130 (216)
                      ..+||+||||+++|+.++||+|||+|+++||||+++. ..++++|++|++||++|+||.+|+.||++|..+
T Consensus         3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~   72 (376)
T PRK14280          3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE-EGADEKFKEISEAYEVLSDDQKRAQYDQFGHAG   72 (376)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhccHhHHHHHHhcCccc
Confidence            3689999999999999999999999999999999875 568899999999999999999999999988654

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.79  E-value=2.4e-19  Score=121.15  Aligned_cols=63  Identities=40%  Similarity=0.665  Sum_probs=59.2

Q ss_pred             chhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC-cHHHHHHHHHHHHHHhcCchhHHHHH
Q 027943           62 SAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGR-DSDALIRRIIQAYEILTEYSRLEIIE  124 (216)
Q Consensus        62 ~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~-~~~~~f~~i~~Ay~~L~d~~~R~~yd  124 (216)
                      |||+||||+++++.++||++|+++++++|||++.... .+.+.|..|++||++|++|.+|+.||
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            5899999999999999999999999999999987754 57799999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.78  E-value=1.9e-19  Score=162.03  Aligned_cols=71  Identities=27%  Similarity=0.480  Sum_probs=66.0

Q ss_pred             cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943           61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (216)
Q Consensus        61 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~  131 (216)
                      .|||+||||+++|+.++||+|||+|+++||||+++.+..++++|++|++||++|+|+.+|+.||++|..++
T Consensus         3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~   73 (397)
T PRK14281          3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGV   73 (397)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhh
Confidence            58999999999999999999999999999999998766788999999999999999999999999876543

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.78  E-value=2.5e-19  Score=160.34  Aligned_cols=68  Identities=32%  Similarity=0.549  Sum_probs=63.7

Q ss_pred             cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCC
Q 027943           61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECID  129 (216)
Q Consensus        61 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~  129 (216)
                      .|||+||||+++|+.++||+|||+|+++||||++++ .+++++|++|++||+||+|+.+|+.||++|..
T Consensus         3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~-~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~   70 (378)
T PRK14278          3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD-EEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP   70 (378)
T ss_pred             CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc-HHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence            589999999999999999999999999999999874 56889999999999999999999999998753

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=7.7e-19  Score=156.54  Aligned_cols=71  Identities=28%  Similarity=0.562  Sum_probs=65.6

Q ss_pred             cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC-cHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943           61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGR-DSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (216)
Q Consensus        61 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~-~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~  131 (216)
                      .|||+||||+++|+.+|||+|||+|+++||||+++.+. .++++|++|++||++|+|+.+|+.||++|..++
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~   74 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDF   74 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCccc
Confidence            58999999999999999999999999999999987653 688999999999999999999999999886554

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=1.1e-18  Score=150.56  Aligned_cols=73  Identities=33%  Similarity=0.559  Sum_probs=66.8

Q ss_pred             CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCC
Q 027943           57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP  130 (216)
Q Consensus        57 ~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~  130 (216)
                      .....|||+||||+++|+..|||+||++|+|+||||.+.++ ++.++|++|.+||++|+|+++|..||..+..+
T Consensus        39 ~~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~-~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~  111 (288)
T KOG0715|consen   39 IISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDK-EASKKFKEISEAYEILSDEEKRQEYDVYGLEQ  111 (288)
T ss_pred             cCCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCc-chhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence            33444899999999999999999999999999999999885 78999999999999999999999999987653

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=9.8e-19  Score=156.94  Aligned_cols=71  Identities=25%  Similarity=0.485  Sum_probs=66.3

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCC
Q 027943           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP  130 (216)
Q Consensus        60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~  130 (216)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.+.+++++|++|++||++|+|+.+|+.||.+|..+
T Consensus         4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~   74 (386)
T PRK14289          4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAG   74 (386)
T ss_pred             cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccc
Confidence            46899999999999999999999999999999999877778999999999999999999999999987543

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=7.6e-19  Score=155.95  Aligned_cols=71  Identities=30%  Similarity=0.477  Sum_probs=65.4

Q ss_pred             CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-CcHHHHHHHHHHHHHHhcCchhHHHHHhhC
Q 027943           57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG-RDSDALIRRIIQAYEILTEYSRLEIIEREC  127 (216)
Q Consensus        57 ~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g  127 (216)
                      +...+.||+||||.++++..+||++||+||++|||||++.. .+++++|+.|+.||+|||||..|++||.+.
T Consensus         4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hr   75 (508)
T KOG0717|consen    4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHR   75 (508)
T ss_pred             chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHH
Confidence            45678899999999999999999999999999999998765 468999999999999999999999999864

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=1.3e-18  Score=155.46  Aligned_cols=70  Identities=34%  Similarity=0.566  Sum_probs=64.5

Q ss_pred             cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943           61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (216)
Q Consensus        61 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~  131 (216)
                      .|||+||||+++||.+|||+|||+|+++||||+++. ..++++|++|++||++|+|+.+|+.||++|..++
T Consensus         3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~   72 (372)
T PRK14300          3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA-KDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAF   72 (372)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhhhHhHhhHHHhcccccc
Confidence            589999999999999999999999999999999874 5678999999999999999999999999876543

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.75  E-value=1.5e-18  Score=154.18  Aligned_cols=69  Identities=32%  Similarity=0.564  Sum_probs=63.7

Q ss_pred             chhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943           62 SAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (216)
Q Consensus        62 ~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~  131 (216)
                      |||+||||+++|+.++||+|||+|+++||||+++ ...++++|++|++||++|+|+.+|..||++|..++
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~   69 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGF   69 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHHHHHHHHHHhhChHHHHhhhhcccccc
Confidence            6999999999999999999999999999999987 35678999999999999999999999999876544

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.75  E-value=2.7e-18  Score=164.07  Aligned_cols=76  Identities=18%  Similarity=0.284  Sum_probs=69.1

Q ss_pred             CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCCCC
Q 027943           57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFDY  133 (216)
Q Consensus        57 ~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~  133 (216)
                      ....++||+||||+++|+..+||+|||+||++||||+++.+ .+..+|+.|++||+||+||.+|+.||.+|..+...
T Consensus       569 ~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~-~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~~  644 (1136)
T PTZ00341        569 EIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKG  644 (1136)
T ss_pred             cCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHhCCHHHHHHHhhccccccCC
Confidence            34568999999999999999999999999999999999875 67889999999999999999999999999776543

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.74  E-value=3.3e-18  Score=149.18  Aligned_cols=68  Identities=29%  Similarity=0.582  Sum_probs=63.2

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCC
Q 027943           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECI  128 (216)
Q Consensus        60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~  128 (216)
                      ..|||+||||+++++.++||+|||+|+++||||+++. ..++++|++|++||++|+|+.+|+.||.+|.
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~-~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~   70 (306)
T PRK10266          3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE-PDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ   70 (306)
T ss_pred             cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence            4689999999999999999999999999999999765 4689999999999999999999999999763

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=2.8e-18  Score=147.53  Aligned_cols=72  Identities=26%  Similarity=0.454  Sum_probs=68.2

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (216)
Q Consensus        60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~  131 (216)
                      ..|||.||||+.+++..+||+|||+.+++||||||++++.+.+.|+.|.+||+||+|+..|..||..+..+-
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~   75 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGS   75 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcc
Confidence            578999999999999999999999999999999999999999999999999999999999999999875543

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.74  E-value=3.5e-18  Score=152.65  Aligned_cols=69  Identities=30%  Similarity=0.541  Sum_probs=64.1

Q ss_pred             cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCC
Q 027943           61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP  130 (216)
Q Consensus        61 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~  130 (216)
                      .|||+||||+++|+.++||+|||+|+++||||+++. ..++++|++|++||++|+||.+|+.||++|..+
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~-~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~   70 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE-KGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAP   70 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-hhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcc
Confidence            479999999999999999999999999999999874 468899999999999999999999999988653

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=3.4e-18  Score=152.01  Aligned_cols=76  Identities=24%  Similarity=0.431  Sum_probs=68.0

Q ss_pred             CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---CcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCCC
Q 027943           57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG---RDSDALIRRIIQAYEILTEYSRLEIIERECIDPFD  132 (216)
Q Consensus        57 ~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~---~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~  132 (216)
                      .....+||.+|+|+++||.+|||+|||++++.|||||..++   ..|++.|++|.+||+||+||.+|++||.+|..|.+
T Consensus         5 e~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~   83 (546)
T KOG0718|consen    5 ELDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK   83 (546)
T ss_pred             ccchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence            34556899999999999999999999999999999998754   34899999999999999999999999999876543

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.73  E-value=5.9e-18  Score=151.33  Aligned_cols=70  Identities=30%  Similarity=0.505  Sum_probs=64.6

Q ss_pred             cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943           61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (216)
Q Consensus        61 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~  131 (216)
                      .|||+||||+++|+.++||+|||+|+++||||+++. ..++++|++|++||++|+|+.+|+.||.+|..++
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~   72 (374)
T PRK14293          3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE-PGAEDRFKEINRAYEVLSDPETRARYDQFGEAGV   72 (374)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-cCHHHHHHHHHHHHHHHhchHHHHHHhhcccccc
Confidence            589999999999999999999999999999999875 4688999999999999999999999999886543

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.71  E-value=2.2e-17  Score=109.87  Aligned_cols=58  Identities=34%  Similarity=0.602  Sum_probs=53.2

Q ss_pred             cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-CCcHHHHHHHHHHHHHHhcCch
Q 027943           61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRD-GRDSDALIRRIIQAYEILTEYS  118 (216)
Q Consensus        61 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~-~~~~~~~f~~i~~Ay~~L~d~~  118 (216)
                      .+||+||||+++++.++||++|+++++++|||++.. ...+.+.|++|++||++|+||.
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~   59 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE   59 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence            369999999999999999999999999999999875 3457889999999999999985

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.69  E-value=4.9e-17  Score=106.22  Aligned_cols=55  Identities=40%  Similarity=0.727  Sum_probs=51.0

Q ss_pred             chhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcC
Q 027943           62 SAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE  116 (216)
Q Consensus        62 ~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d  116 (216)
                      +||+||||+++++.++||++||+|++++|||+......+.+.|++|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence            5999999999999999999999999999999987644578999999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=5.8e-17  Score=131.82  Aligned_cols=73  Identities=29%  Similarity=0.449  Sum_probs=67.4

Q ss_pred             CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCC
Q 027943           57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECID  129 (216)
Q Consensus        57 ~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~  129 (216)
                      .....|+|+||||+++++.+|||+|||+|.+++||||++..++.++.|..|++||+.|+|+..|+.|..+|..
T Consensus        95 ~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~P  167 (230)
T KOG0721|consen   95 ERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNP  167 (230)
T ss_pred             HhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCC
Confidence            3456789999999999999999999999999999999988777888999999999999999999999999854

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=3.6e-17  Score=134.24  Aligned_cols=71  Identities=23%  Similarity=0.443  Sum_probs=64.4

Q ss_pred             CccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCC
Q 027943           59 STSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNR--DGRDSDALIRRIIQAYEILTEYSRLEIIERECID  129 (216)
Q Consensus        59 ~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~--~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~  129 (216)
                      ...++|+||||.++|+..+||+|||+|++++|||+++  ...++.+.|++|+.||.||+|.++|+.||..|.-
T Consensus        12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~i   84 (264)
T KOG0719|consen   12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSI   84 (264)
T ss_pred             cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCC
Confidence            3458999999999999999999999999999999985  3346889999999999999999999999998743

>PHA03102 Small T antigen; Reviewed

Probab=99.66  E-value=1.6e-16  Score=124.64  Aligned_cols=66  Identities=17%  Similarity=0.244  Sum_probs=60.6

Q ss_pred             cchhhhhCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCC
Q 027943           61 SSAYAILGVEPSC--SAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP  130 (216)
Q Consensus        61 ~~~y~iLgv~~~a--s~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~  130 (216)
                      ..+|+||||+++|  |..+||+|||++++++|||+++    .+++|++|++||++|+|+.+|..||.+|.+.
T Consensus         5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg----~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~   72 (153)
T PHA03102          5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGG----DEEKMKELNTLYKKFRESVKSLRDLDGEEDS   72 (153)
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCc----hhHHHHHHHHHHHHHhhHHHhccccccCCcc
Confidence            5689999999999  9999999999999999999953    3679999999999999999999999988554

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.64  E-value=4.3e-16  Score=146.27  Aligned_cols=71  Identities=28%  Similarity=0.506  Sum_probs=65.6

Q ss_pred             cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCCC
Q 027943           61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFD  132 (216)
Q Consensus        61 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~  132 (216)
                      .+||+||||+++|+.++||++||+|+++||||+++. ..+.++|++|++||++|+|+.+|..||.+|..+..
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~d   72 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSNPKKRANYDKYGHDGVD   72 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccccc
Confidence            579999999999999999999999999999999876 56788999999999999999999999999876654

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=7e-16  Score=125.96  Aligned_cols=68  Identities=34%  Similarity=0.537  Sum_probs=63.9

Q ss_pred             CccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCc-HHHHHHHHHHHHHHhcCchhHHHHHhh
Q 027943           59 STSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRD-SDALIRRIIQAYEILTEYSRLEIIERE  126 (216)
Q Consensus        59 ~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~-~~~~f~~i~~Ay~~L~d~~~R~~yd~~  126 (216)
                      ...+||+||||+++++..+||++||+++++||||+++.... +.+.|+.|++||++|+|+.+|..||..
T Consensus         4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~   72 (237)
T COG2214           4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI   72 (237)
T ss_pred             hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence            45789999999999999999999999999999999988764 889999999999999999999999985

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.62  E-value=6.5e-16  Score=134.00  Aligned_cols=74  Identities=26%  Similarity=0.445  Sum_probs=65.7

Q ss_pred             CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC---cHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943           57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGR---DSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (216)
Q Consensus        57 ~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~---~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~  131 (216)
                      ....+|||+||||.++|+..||.||||+++.+||||...+..   .++.+|.-|..|-+||+||++|+.||.. .+|.
T Consensus       390 qs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnG-eDPL  466 (504)
T KOG0624|consen  390 QSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNG-EDPL  466 (504)
T ss_pred             HhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCC-CCCC
Confidence            345789999999999999999999999999999999988754   4788999999999999999999999974 3443

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.57  E-value=5.9e-15  Score=118.51  Aligned_cols=66  Identities=15%  Similarity=0.243  Sum_probs=58.1

Q ss_pred             chhhhhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCc-----HHHHHHHHHHHHHHhcCchhHHHHHhhC
Q 027943           62 SAYAILGVEPS--CSAAELKAAFRAKVKQYHPDVNRDGRD-----SDALIRRIIQAYEILTEYSRLEIIEREC  127 (216)
Q Consensus        62 ~~y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~~-----~~~~f~~i~~Ay~~L~d~~~R~~yd~~g  127 (216)
                      +||+||||++.  ++..+||++||+|++++|||+....+.     +.+.+..||+||++|+||.+|..|+...
T Consensus         2 ~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l   74 (171)
T PRK05014          2 DYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSL   74 (171)
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHh
Confidence            79999999995  788999999999999999999765432     4568899999999999999999998643

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.55  E-value=8.7e-15  Score=116.91  Aligned_cols=67  Identities=16%  Similarity=0.230  Sum_probs=57.6

Q ss_pred             cchhhhhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCc---HHHHHHHHHHHHHHhcCchhHHHHHhhC
Q 027943           61 SSAYAILGVEPS--CSAAELKAAFRAKVKQYHPDVNRDGRD---SDALIRRIIQAYEILTEYSRLEIIEREC  127 (216)
Q Consensus        61 ~~~y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~~---~~~~f~~i~~Ay~~L~d~~~R~~yd~~g  127 (216)
                      .+||+||||++.  ++..+|+++||+|++++|||++....+   +...+..||+||++|+||.+|..|+...
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l   73 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLL   73 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence            479999999986  789999999999999999999864322   2345789999999999999999998764

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.54  E-value=1.8e-14  Score=115.69  Aligned_cols=69  Identities=20%  Similarity=0.299  Sum_probs=60.2

Q ss_pred             CccchhhhhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCc-----HHHHHHHHHHHHHHhcCchhHHHHHhhC
Q 027943           59 STSSAYAILGVEPS--CSAAELKAAFRAKVKQYHPDVNRDGRD-----SDALIRRIIQAYEILTEYSRLEIIEREC  127 (216)
Q Consensus        59 ~~~~~y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~~-----~~~~f~~i~~Ay~~L~d~~~R~~yd~~g  127 (216)
                      ...+||++|||++.  .+..+|+++||+|++++|||++...+.     +.+.+..||+||++|+||.+|..|+...
T Consensus         2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l   77 (173)
T PRK00294          2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLAL   77 (173)
T ss_pred             CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHh
Confidence            35689999999996  678999999999999999999876543     4567899999999999999999998654

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.54  E-value=2e-14  Score=115.81  Aligned_cols=66  Identities=23%  Similarity=0.328  Sum_probs=57.6

Q ss_pred             cchhhhhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCcHHH-----HHHHHHHHHHHhcCchhHHHHHhh
Q 027943           61 SSAYAILGVEPS--CSAAELKAAFRAKVKQYHPDVNRDGRDSDA-----LIRRIIQAYEILTEYSRLEIIERE  126 (216)
Q Consensus        61 ~~~y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~-----~f~~i~~Ay~~L~d~~~R~~yd~~  126 (216)
                      .+||+||||++.  ++..+|+++||+|++++|||++...+..++     .+..||+||++|+||.+|..|...
T Consensus         6 ~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~   78 (176)
T PRK03578          6 DDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLH   78 (176)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHH
Confidence            689999999985  689999999999999999999876554333     458999999999999999999864

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.49  E-value=5.2e-14  Score=105.27  Aligned_cols=55  Identities=29%  Similarity=0.501  Sum_probs=49.8

Q ss_pred             CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhc
Q 027943           57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT  115 (216)
Q Consensus        57 ~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~  115 (216)
                      .++..++|+||||+++++.++||++||+|++++|||+.    ++.+.|++|++||++|.
T Consensus        61 ~Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg----Gs~~~~~kIneAyevL~  115 (116)
T PTZ00100         61 PMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNG----GSTYIASKVNEAKDLLL  115 (116)
T ss_pred             CCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC----CCHHHHHHHHHHHHHHh
Confidence            56678999999999999999999999999999999984    24678999999999995

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=5.5e-14  Score=125.23  Aligned_cols=69  Identities=26%  Similarity=0.445  Sum_probs=64.5

Q ss_pred             CCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhC
Q 027943           58 PSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIEREC  127 (216)
Q Consensus        58 ~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g  127 (216)
                      .+..|+|.+|||+.+++.++||+.||++|...||||+.. +.|++.|+.|+.||++|+|+++|..||.+.
T Consensus       232 ~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~-~~A~Eafk~Lq~Afevig~~~kR~eYd~e~  300 (490)
T KOG0720|consen  232 LNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMI-PRAEEAFKKLQVAFEVIGDSVKRKEYDLEL  300 (490)
T ss_pred             hcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCC-hhHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence            347899999999999999999999999999999999984 678999999999999999999999999865

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=1.8e-13  Score=120.95  Aligned_cols=68  Identities=26%  Similarity=0.434  Sum_probs=63.9

Q ss_pred             CccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-CcHHHHHHHHHHHHHHhcCchhHHHHHhh
Q 027943           59 STSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG-RDSDALIRRIIQAYEILTEYSRLEIIERE  126 (216)
Q Consensus        59 ~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~  126 (216)
                      ...+||.|||+.++++..+||++||++++.||||++..+ .+++.+|++|.+||.+|+|+.+|..||+.
T Consensus       371 kRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg  439 (486)
T KOG0550|consen  371 KRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSG  439 (486)
T ss_pred             hhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccc
Confidence            467899999999999999999999999999999998876 67899999999999999999999999975

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=1.3e-13  Score=114.75  Aligned_cols=67  Identities=31%  Similarity=0.513  Sum_probs=61.4

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhC
Q 027943           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIEREC  127 (216)
Q Consensus        60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g  127 (216)
                      .+|.|+||||++.++..+|++|||+|+++||||++.+.+ ..+.|+.|..||++|.|...|..||-..
T Consensus        32 ~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e-~k~~F~~iAtayeilkd~e~rt~ydyal   98 (329)
T KOG0722|consen   32 AENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPE-SKKLFVKIATAYEILKDNETRTQYDYAL   98 (329)
T ss_pred             chhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCch-hhhhhhhhhcccccccchhhHHhHHHHh
Confidence            467999999999999999999999999999999998754 4589999999999999999999998654

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.41  E-value=3.8e-13  Score=115.19  Aligned_cols=61  Identities=30%  Similarity=0.446  Sum_probs=53.2

Q ss_pred             CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-------CcHHHHHHHHHHHHHHhcCc
Q 027943           57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG-------RDSDALIRRIIQAYEILTEY  117 (216)
Q Consensus        57 ~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~-------~~~~~~f~~i~~Ay~~L~d~  117 (216)
                      .+...++|+||||++++|.++||++||+|+++||||+....       ..++++|++|++||++|+..
T Consensus       196 ~~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~  263 (267)
T PRK09430        196 GPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ  263 (267)
T ss_pred             CCcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence            35568999999999999999999999999999999997542       23678999999999999853

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=3.4e-13  Score=114.96  Aligned_cols=70  Identities=30%  Similarity=0.512  Sum_probs=62.5

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-CcHHHHHHHHHHHHHHhcCchhHHHHHhhCCC
Q 027943           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG-RDSDALIRRIIQAYEILTEYSRLEIIERECID  129 (216)
Q Consensus        60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~  129 (216)
                      ..++|+||||.++|+..+||+||++++++||||+++.. ..+..+|++|.+||++|+|+.+|..||.+|..
T Consensus         2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~   72 (306)
T KOG0714|consen    2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEE   72 (306)
T ss_pred             cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCcc
Confidence            46799999999999999999999999999999997765 23555899999999999999999999998853

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=99.30  E-value=6.6e-12  Score=100.89  Aligned_cols=67  Identities=16%  Similarity=0.133  Sum_probs=58.0

Q ss_pred             cchhhhhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCc-----HHHHHHHHHHHHHHhcCchhHHHHHhhC
Q 027943           61 SSAYAILGVEPS--CSAAELKAAFRAKVKQYHPDVNRDGRD-----SDALIRRIIQAYEILTEYSRLEIIEREC  127 (216)
Q Consensus        61 ~~~y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~~-----~~~~f~~i~~Ay~~L~d~~~R~~yd~~g  127 (216)
                      .|||++|||++.  .+..+++++|++|.+++|||+....+.     +.+....||+||.+|+||.+|+.|=...
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L   75 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIAL   75 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHh
Confidence            579999999985  899999999999999999999876553     3445678999999999999999996643

>PHA02624 large T antigen; Provisional

Probab=99.29  E-value=3.2e-12  Score=118.97  Aligned_cols=60  Identities=22%  Similarity=0.383  Sum_probs=55.7

Q ss_pred             ccchhhhhCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHH
Q 027943           60 TSSAYAILGVEPSC--SAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII  123 (216)
Q Consensus        60 ~~~~y~iLgv~~~a--s~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~y  123 (216)
                      ..++|+||||+++|  +..+||+|||+++++||||+.+    ++++|++|++||++|+|+.+|..|
T Consensus        10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgG----deekfk~Ln~AYevL~d~~k~~r~   71 (647)
T PHA02624         10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGG----DEEKMKRLNSLYKKLQEGVKSARQ   71 (647)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC----cHHHHHHHHHHHHHHhcHHHhhhc
Confidence            46799999999999  9999999999999999999943    378999999999999999999988

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.27  E-value=3.7e-12  Score=113.49  Aligned_cols=71  Identities=24%  Similarity=0.367  Sum_probs=63.6

Q ss_pred             CccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-----CcHHHHHHHHHHHHHHhcCchhHHHHHhhCCC
Q 027943           59 STSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG-----RDSDALIRRIIQAYEILTEYSRLEIIERECID  129 (216)
Q Consensus        59 ~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~-----~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~  129 (216)
                      ..-|+||||||+.+++..+||++||+|..|+||||.+.-     .+-++.+++|++||..|+|...|+.|-.+|..
T Consensus        96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtP  171 (610)
T COG5407          96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTP  171 (610)
T ss_pred             cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCC
Confidence            346899999999999999999999999999999997652     34678899999999999999999999998743

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=99.13  E-value=1.3e-10  Score=92.22  Aligned_cols=55  Identities=20%  Similarity=0.209  Sum_probs=47.9

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCCCc-----HHHHHHHHHHHHHHhcCchhHHHHHhhC
Q 027943           73 CSAAELKAAFRAKVKQYHPDVNRDGRD-----SDALIRRIIQAYEILTEYSRLEIIEREC  127 (216)
Q Consensus        73 as~~~Ik~ayr~l~~~~HPDk~~~~~~-----~~~~f~~i~~Ay~~L~d~~~R~~yd~~g  127 (216)
                      .+..+|+++||+|++++|||+....+.     +...+..||+||++|+||.+|+.|....
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l   62 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSL   62 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHh
Confidence            578899999999999999999755432     5678999999999999999999998764

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>PF13459 Fer4_15: 4Fe-4S single cluster domain

Probab=99.00  E-value=2.4e-10  Score=77.42  Aligned_cols=57  Identities=32%  Similarity=0.610  Sum_probs=47.7

Q ss_pred             hhhcccccccCCCCCCCCCCCCCceeeeCCCCceeeecC--------CCChhHHHHHHHhcCCCCCeEe
Q 027943          141 VFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQ--------GHGQDYRVQLAVGQCPRSCIHY  201 (216)
Q Consensus       141 ~fvde~~c~g~Gcp~~C~~~~p~~F~~~~~~G~ar~~~~--------~~~~~~~v~~Av~~CP~~ai~~  201 (216)
                      +.+|+..|+|+|   .|...+|.+|.++++ |.+.+...        +.+....+++|++.||++||+|
T Consensus         1 V~vD~~~C~gcg---~C~~~aP~vF~~d~~-g~a~~~~~~~~~~~~v~~~~~~~~~~Aa~~CP~~aI~v   65 (65)
T PF13459_consen    1 VWVDRDRCIGCG---LCVELAPEVFELDDD-GKAVVLVDGGEGEGEVPEEDEEDVREAAEACPVGAIHV   65 (65)
T ss_pred             CEEecccCcCcc---HHHhhCCccEEECCC-CCEEEEecCcccccCCCchhHHHHHHHHHhCCHhhEEC
Confidence            468999999988   999999999999876 66655532        3556788999999999999997

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=6.9e-10  Score=89.67  Aligned_cols=64  Identities=19%  Similarity=0.352  Sum_probs=57.7

Q ss_pred             CCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-CcHHHHHHHHHHHHHHhcCchhHH
Q 027943           58 PSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG-RDSDALIRRIIQAYEILTEYSRLE  121 (216)
Q Consensus        58 ~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~  121 (216)
                      .-.-++|+||.|.|..+.++||+.||+|.+..|||||+++ .-+...|..+..||..|-|+..|.
T Consensus        50 yfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rk  114 (250)
T KOG1150|consen   50 YFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRK  114 (250)
T ss_pred             ccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence            3456899999999999999999999999999999999987 457888999999999999998654

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=8.9e-10  Score=92.83  Aligned_cols=69  Identities=23%  Similarity=0.374  Sum_probs=60.2

Q ss_pred             ccchhhhhCCCC---CCCHHHHHHHHHHHHHHhCCCCCCC--CCcHHHHHHHHHHHHHHhcCchhHHHHHhhCC
Q 027943           60 TSSAYAILGVEP---SCSAAELKAAFRAKVKQYHPDVNRD--GRDSDALIRRIIQAYEILTEYSRLEIIERECI  128 (216)
Q Consensus        60 ~~~~y~iLgv~~---~as~~~Ik~ayr~l~~~~HPDk~~~--~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~  128 (216)
                      ..|+|.+|||+.   .++..+|+++.++.+.+||||+...  +.+....|+.|+.||+||+|+.+|..||..-.
T Consensus        42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df  115 (379)
T COG5269          42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDF  115 (379)
T ss_pred             hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccccc
Confidence            368999999987   6888999999999999999999733  33578899999999999999999999998543

>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A

Probab=98.94  E-value=2.9e-10  Score=75.32  Aligned_cols=56  Identities=30%  Similarity=0.603  Sum_probs=41.9

Q ss_pred             hcccccccCCCCCCCCCCCCCceeeeCCCCceeeecCCCC--hhHHHHHHHhcCCCCCeEe
Q 027943          143 VNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHG--QDYRVQLAVGQCPRSCIHY  201 (216)
Q Consensus       143 vde~~c~g~Gcp~~C~~~~p~~F~~~~~~G~ar~~~~~~~--~~~~v~~Av~~CP~~ai~~  201 (216)
                      ||...|+++|   .|...+|.+|.+++..|.+.+..++..  ....+++|++.||++||+|
T Consensus         1 VD~~~Ci~Cg---~C~~~aP~vF~~~d~~~~~~v~~~~~~~~~~~~~~~A~~~CP~~aI~v   58 (58)
T PF13370_consen    1 VDRDKCIGCG---LCVEIAPDVFDYDDDGGKAVVLDQPVPEEEEEAAREAAESCPTAAIRV   58 (58)
T ss_dssp             E-TTT--S-S---HHHHH-TTTEEEETTSTEEECTTCCCSHCHHHHHHHHHHHSTT--EEE
T ss_pred             CChhhCcCCC---hHHHhCcHheeEcCCCCeEEEeCCCcChHHHHHHHHHHHcCCHhhcCC
Confidence            5778999988   999999999999988888777777543  4567999999999999986

...

>COG1141 Fer Ferredoxin [Energy production and conversion]

Probab=98.89  E-value=1.4e-09  Score=73.92  Aligned_cols=59  Identities=27%  Similarity=0.540  Sum_probs=46.0

Q ss_pred             hhhcccccccCCCCCCCCCCCCCceeeeCCCCceee------ecC-CCChhHHHHHHHhcCCCCCeEecC
Q 027943          141 VFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARA------ISQ-GHGQDYRVQLAVGQCPRSCIHYVT  203 (216)
Q Consensus       141 ~fvde~~c~g~Gcp~~C~~~~p~~F~~~~~~G~ar~------~~~-~~~~~~~v~~Av~~CP~~ai~~v~  203 (216)
                      +.+|+..|+|+|   .|...+|.+|.+++. |.+.+      ... +.+....+++|++.||++||+|.+
T Consensus         3 v~vDrd~Cigcg---~C~~~aPdvF~~~d~-G~a~~~~~~~~~~~~~~e~~~~~~~A~~~CP~~aI~v~~   68 (68)
T COG1141           3 VIVDRDTCIGCG---ACLAVAPDVFDYDDE-GIAFVLDGNIGEGEVPEELEEDAEDAAEACPTDAIKVEE   68 (68)
T ss_pred             EEechhhccccc---hhhhcCCcceeeCCC-cceEeccCccccccCChHHHHHHHHHHHhCCccceEecC
Confidence            468999999988   999999999999665 55422      111 234457799999999999999963

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=6.6e-08  Score=70.57  Aligned_cols=58  Identities=31%  Similarity=0.360  Sum_probs=51.2

Q ss_pred             CCCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCc
Q 027943           56 TPPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEY  117 (216)
Q Consensus        56 ~~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~  117 (216)
                      ..|+..+.-.||||+++++.+.||.++|+++...|||+.+.    ...-.+||||+++|...
T Consensus        51 ~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGS----PYlAsKINEAKdlLe~~  108 (112)
T KOG0723|consen   51 PKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGS----PYLASKINEAKDLLEGT  108 (112)
T ss_pred             cccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCC----HHHHHHHHHHHHHHhcc
Confidence            46788899999999999999999999999999999999544    56667899999999754

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=8.9e-08  Score=93.05  Aligned_cols=58  Identities=29%  Similarity=0.518  Sum_probs=49.4

Q ss_pred             CCCCccchhhhhCCCCC----CCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcC
Q 027943           56 TPPSTSSAYAILGVEPS----CSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE  116 (216)
Q Consensus        56 ~~~~~~~~y~iLgv~~~----as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d  116 (216)
                      ..++..+.|+||.|+-+    ...++||++|+||+.+||||||+..   -++|.++|+||+.|..
T Consensus      1276 ~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEG---RemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1276 ATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEG---REMFERVNKAYELLSS 1337 (2235)
T ss_pred             CccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchH---HHHHHHHHHHHHHHHH
Confidence            35667889999999763    3558999999999999999998753   7899999999999983

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=4e-07  Score=75.41  Aligned_cols=56  Identities=34%  Similarity=0.528  Sum_probs=49.6

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHH-HhcC
Q 027943           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYE-ILTE  116 (216)
Q Consensus        60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~-~L~d  116 (216)
                      ...+|.||||..+++.++++.+|.+|++++|||...+. ...+.|.+|.+||. ||+.
T Consensus        46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~-adaa~f~qideafrkvlq~  102 (342)
T KOG0568|consen   46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEE-ADAARFIQIDEAFRKVLQE  102 (342)
T ss_pred             HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCcc-ccHHHHHHHHHHHHHHHHH
Confidence            46799999999999999999999999999999997653 45789999999998 7764

>PF06902 Fer4_19: Divergent 4Fe-4S mono-cluster; InterPro: IPR010693 This entry represents bacterial ferredoxins such Ferredoxin-1, -2 and -soy from Streptomyces griseolus and Ferredoxin fas2 from Rhodococcus fascians, plus several bacterial hypothetical proteins that contain three highly conserved cysteine residues

Probab=98.19  E-value=1.3e-06  Score=58.88  Aligned_cols=59  Identities=25%  Similarity=0.472  Sum_probs=49.6

Q ss_pred             hhhhhhcccccccCCCCCCCCCCCCCceeeeCCCCceeeecCCCChhHHHHHHHhcCCCCCeEecC
Q 027943          138 ALDVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVT  203 (216)
Q Consensus       138 ~~~~fvde~~c~g~Gcp~~C~~~~p~~F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~  203 (216)
                      ...+..|+..|.+.|   .|+..+|.+|...+. |..   .+.....+.++.+++.||.+||.+++
T Consensus         5 ~i~V~~d~~~C~hag---~Cv~~~p~VFd~~~~-~~v---~~d~a~~~~v~~~v~~CPSGAL~~~~   63 (64)
T PF06902_consen    5 DITVTWDRERCIHAG---FCVRGAPEVFDQDDE-PWV---SPDEASAEEVREAVDRCPSGALSYWD   63 (64)
T ss_pred             cEEEEECcCcccchh---hhhcCCCCcccCCCC-CcC---CcCccCHHHHHHHHHcCCccCcEEee
Confidence            356788999999999   999999999999766 543   55566778999999999999999864

These ferredoxins each bind a 3Fe-4S cluster. Ferredoxin-soy (SoyB) act as electron transport protein for the cytochrome P450-SOY system []. Ferredoxin-1 (SuaB) and Ferredoxin-2 (SubB) act as electron transport proteins for the herbicide-metabolising cytochrome P-450 SU1 and SU2 systems, respectively [, ]. Ferredoxin-fas2 also plays a role in electrontransfer, the fas operon encoding genes involved in cytokinin production and in host plant fasciation (leafy gall).

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=97.88  E-value=2.8e-05  Score=60.73  Aligned_cols=68  Identities=21%  Similarity=0.238  Sum_probs=55.0

Q ss_pred             CCccchhhhhCCCC--CCCHHHHHHHHHHHHHHhCCCCCCCC-----CcHHHHHHHHHHHHHHhcCchhHHHHHh
Q 027943           58 PSTSSAYAILGVEP--SCSAAELKAAFRAKVKQYHPDVNRDG-----RDSDALIRRIIQAYEILTEYSRLEIIER  125 (216)
Q Consensus        58 ~~~~~~y~iLgv~~--~as~~~Ik~ayr~l~~~~HPDk~~~~-----~~~~~~f~~i~~Ay~~L~d~~~R~~yd~  125 (216)
                      ....+||.++|...  ...+..++.-|....++.|||+....     ..+.+...++|+||.+|+||-+|+.|=.
T Consensus         5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil   79 (168)
T KOG3192|consen    5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL   79 (168)
T ss_pred             chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            34578999998754  56777778799999999999994432     2366778899999999999999999964

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.28  E-value=0.00019  Score=57.73  Aligned_cols=54  Identities=28%  Similarity=0.433  Sum_probs=45.7

Q ss_pred             cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC-------cHHHHHHHHHHHHHHh
Q 027943           61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGR-------DSDALIRRIIQAYEIL  114 (216)
Q Consensus        61 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~-------~~~~~f~~i~~Ay~~L  114 (216)
                      .+.|.+||+...+...+|+++|+++...+|||+....+       ...+++++|++||+.+
T Consensus       113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            68999999999999999999999999999999955433       2566777888888754

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.97  E-value=0.0006  Score=54.87  Aligned_cols=69  Identities=17%  Similarity=0.247  Sum_probs=52.9

Q ss_pred             hhhhhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCc-----HHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943           63 AYAILGVEPS--CSAAELKAAFRAKVKQYHPDVNRDGRD-----SDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (216)
Q Consensus        63 ~y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~~-----~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~  131 (216)
                      ++.++|+.+.  ...+.++..|+.+.+.+|||+....+.     +.+.+..++.||.+|.+|..|..|=....+|.
T Consensus         3 ~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~~g~   78 (174)
T COG1076           3 GFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALADGL   78 (174)
T ss_pred             cccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcccc
Confidence            4455565553  355678999999999999999876554     33477889999999999999999976555444

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=96.94  E-value=0.00099  Score=61.29  Aligned_cols=42  Identities=21%  Similarity=0.355  Sum_probs=31.6

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCCCc-------HHHHHHHHHHHHHH
Q 027943           72 SCSAAELKAAFRAKVKQYHPDVNRDGRD-------SDALIRRIIQAYEI  113 (216)
Q Consensus        72 ~as~~~Ik~ayr~l~~~~HPDk~~~~~~-------~~~~f~~i~~Ay~~  113 (216)
                      -.+.++||++|||.++..||||.+..+.       +++.|..+++||+.
T Consensus       399 LVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~  447 (453)
T KOG0431|consen  399 LVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNK  447 (453)
T ss_pred             ccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHh
Confidence            4688999999999999999999877642       44455555555554

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=96.78  E-value=0.003  Score=48.26  Aligned_cols=59  Identities=22%  Similarity=0.229  Sum_probs=43.2

Q ss_pred             CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchh
Q 027943           57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSR  119 (216)
Q Consensus        57 ~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~  119 (216)
                      .|+......||||++..+.++|.+.|.+|....+|++    +++...=.+|..|.+.|..+.+
T Consensus        54 ~Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~k----GGSfYLQSKV~rAKErl~~El~  112 (127)
T PF03656_consen   54 GMTLDEARQILNVKEELSREEIQKRYKHLFKANDPSK----GGSFYLQSKVFRAKERLEQELK  112 (127)
T ss_dssp             ---HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCC----TS-HHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCc----CCCHHHHHHHHHHHHHHHHHHH
Confidence            5777899999999999999999999999999999998    3446666689999999886553

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>COG3592 Uncharacterized conserved protein [Function unknown]

Probab=96.33  E-value=0.0025  Score=42.92  Aligned_cols=60  Identities=22%  Similarity=0.540  Sum_probs=48.3

Q ss_pred             hhhhhhhcccccccCCCCCCCCCCCCCceeeeCCCCceeeecCCCChhHHHHHHHhcCCCCCeEecC
Q 027943          137 EALDVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVT  203 (216)
Q Consensus       137 ~~~~~fvde~~c~g~Gcp~~C~~~~p~~F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~  203 (216)
                      +..+++++...|.-.|   .|+.++|.+|...    ..-=+.++..+.+.++--++.||.+||.++.
T Consensus        14 ekidi~fn~~iC~Hs~---nCV~Gn~~vF~~~----rkPWI~Pd~~~ve~i~~vi~sCPSGAl~Y~~   73 (74)
T COG3592          14 EKIDIYFNTAICAHSG---NCVRGNPKVFNLG----RKPWIMPDAVDVEEIVKVIDTCPSGALKYRR   73 (74)
T ss_pred             ceEEEEeccceeeccc---ceecCCHhhcccC----CCCccCCCCCCHHHHHHHHHhCCchhhheec
Confidence            4467888889999888   8999999999873    3335556667778899999999999998763

>PF13446 RPT: A repeated domain in UCH-protein

Probab=92.23  E-value=0.34  Score=31.94  Aligned_cols=49  Identities=24%  Similarity=0.416  Sum_probs=36.1

Q ss_pred             CCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCc
Q 027943           58 PSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEY  117 (216)
Q Consensus        58 ~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~  117 (216)
                      ++-.+.|++|||+++.+.+.|..+|+.... -.|          .....+.+|..++.+.
T Consensus         2 ~~~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-~~P----------~~~~~~r~AL~~Ia~~   50 (62)
T PF13446_consen    2 MDVEEAYEILGIDEDTDDDFIISAFQSKVN-DDP----------SQKDTLREALRVIAES   50 (62)
T ss_pred             CCHHHHHHHhCcCCCCCHHHHHHHHHHHHH-cCh----------HhHHHHHHHHHHHHHH
Confidence            345679999999999999999999999887 112          1234556677776643

>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised

Probab=89.12  E-value=0.91  Score=37.23  Aligned_cols=39  Identities=23%  Similarity=0.241  Sum_probs=31.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcC
Q 027943           70 EPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE  116 (216)
Q Consensus        70 ~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d  116 (216)
                      +++|+.+||++|+.++..+|--        .++.-.+|-.||+.|.=
T Consensus         1 S~~ASfeEIq~Arn~ll~~y~g--------d~~~~~~IEaAYD~ILM   39 (194)
T PF11833_consen    1 SEDASFEEIQAARNRLLAQYAG--------DEKSREAIEAAYDAILM   39 (194)
T ss_pred             CCCCCHHHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHHHH
Confidence            4789999999999999999822        24556789999987653

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.

>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC

Probab=89.06  E-value=0.23  Score=34.43  Aligned_cols=59  Identities=14%  Similarity=0.263  Sum_probs=35.3

Q ss_pred             hhhcccccccCCCCCCCCCCCCC-ceeeeCCCCc--eee-ecCCCChhHHHHHHHhcCCCCCeEec
Q 027943          141 VFVNEVLCVGKGCPYSCVKTAPN-AFSYSSSTGT--ARA-ISQGHGQDYRVQLAVGQCPRSCIHYV  202 (216)
Q Consensus       141 ~fvde~~c~g~Gcp~~C~~~~p~-~F~~~~~~G~--ar~-~~~~~~~~~~v~~Av~~CP~~ai~~v  202 (216)
                      ++++...|.++|   .|...+|. .|.+....+.  ... .....+.-..-...++.||++||.|-
T Consensus         3 ~~~~~~~Ci~C~---~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~   65 (80)
T TIGR03048         3 SVKIYDTCIGCT---QCVRACPTDVLEMVPWDGCKAGQIASAPRTEDCVGCKRCESACPTDFLSVR   65 (80)
T ss_pred             ceecCCcCcCcc---hHHHHCCccceeeecccccccccccCcCCCCcCcChhHHHHhcCcccCEEE
Confidence            345678899977   89998884 4665432221  111 11111222234689999999999973

Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.

>CHL00065 psaC photosystem I subunit VII

Probab=88.27  E-value=0.15  Score=35.38  Aligned_cols=59  Identities=14%  Similarity=0.275  Sum_probs=34.5

Q ss_pred             hhcccccccCCCCCCCCCCCC-CceeeeCCCC--ceee-ecCCCChhHHHHHHHhcCCCCCeEecC
Q 027943          142 FVNEVLCVGKGCPYSCVKTAP-NAFSYSSSTG--TARA-ISQGHGQDYRVQLAVGQCPRSCIHYVT  203 (216)
Q Consensus       142 fvde~~c~g~Gcp~~C~~~~p-~~F~~~~~~G--~ar~-~~~~~~~~~~v~~Av~~CP~~ai~~v~  203 (216)
                      ..+...|+++|   .|...+| ..|.+.+..+  .... .....+.-..-...++.||++||.|..
T Consensus         5 ~~~~~~Ci~Cg---~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~~   67 (81)
T CHL00065          5 VKIYDTCIGCT---QCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRV   67 (81)
T ss_pred             cCccccCCChh---HHHHHCCccchhheeccccccccccccCCCCcCCChhhhhhhcCccccEEEE
Confidence            34567899977   8998888 4455543221  1011 111111112235789999999999864

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=86.76  E-value=0.72  Score=40.62  Aligned_cols=53  Identities=21%  Similarity=0.261  Sum_probs=41.2

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCCC----CCcHHHHHHHHHHHHHHhcCchhHHHHHh
Q 027943           73 CSAAELKAAFRAKVKQYHPDVNRD----GRDSDALIRRIIQAYEILTEYSRLEIIER  125 (216)
Q Consensus        73 as~~~Ik~ayr~l~~~~HPDk~~~----~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~  125 (216)
                      ++..+|..+|+..++..||++...    .....+.++.|.+||++|++..+|...|.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~   60 (335)
T KOG0724|consen    4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDS   60 (335)
T ss_pred             ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhh
Confidence            567889999999999999999642    12356779999999999998655444443

>PLN00071 photosystem I subunit VII; Provisional

Probab=86.62  E-value=0.32  Score=33.67  Aligned_cols=58  Identities=17%  Similarity=0.336  Sum_probs=34.8

Q ss_pred             hhcccccccCCCCCCCCCCCC-CceeeeCCCC-ceeee--cCCCChhHHHHHHHhcCCCCCeEec
Q 027943          142 FVNEVLCVGKGCPYSCVKTAP-NAFSYSSSTG-TARAI--SQGHGQDYRVQLAVGQCPRSCIHYV  202 (216)
Q Consensus       142 fvde~~c~g~Gcp~~C~~~~p-~~F~~~~~~G-~ar~~--~~~~~~~~~v~~Av~~CP~~ai~~v  202 (216)
                      +++...|.++|   .|...+| ..+.+....+ .....  ....+.-..-...++.||++||.+.
T Consensus         5 ~~~~~~C~~C~---~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~   66 (81)
T PLN00071          5 VKIYDTCIGCT---QCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVR   66 (81)
T ss_pred             eEcCCcCcChh---HHHHHCCccceeeecccccccccccCcCCCCcCcChhhHHhhcCCccceEe
Confidence            45677899977   8998888 4466543222 11111  1111222234589999999999974

>PF14687 DUF4460: Domain of unknown function (DUF4460)

Probab=85.40  E-value=2.1  Score=31.97  Aligned_cols=47  Identities=17%  Similarity=0.268  Sum_probs=33.0

Q ss_pred             CCCCHHHHHHHHHHHHHHhCCCCCCCCCc----HHHHHHHHHHHHHHhcCc
Q 027943           71 PSCSAAELKAAFRAKVKQYHPDVNRDGRD----SDALIRRIIQAYEILTEY  117 (216)
Q Consensus        71 ~~as~~~Ik~ayr~l~~~~HPDk~~~~~~----~~~~f~~i~~Ay~~L~d~  117 (216)
                      +..+..++|.+.|.+-++.|||.....+.    .++-++.|+.-.+.|..+
T Consensus         4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~   54 (112)
T PF14687_consen    4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR   54 (112)
T ss_pred             hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence            34567889999999999999998765542    234455666655655543

>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J

Probab=84.37  E-value=0.2  Score=31.83  Aligned_cols=50  Identities=22%  Similarity=0.510  Sum_probs=26.1

Q ss_pred             ccccCCCCCCCCCCCCCceeeeCCCCceeeecCCC---ChhHH--HHHHHhcCCCCCe
Q 027943          147 LCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGH---GQDYR--VQLAVGQCPRSCI  199 (216)
Q Consensus       147 ~c~g~Gcp~~C~~~~p~~F~~~~~~G~ar~~~~~~---~~~~~--v~~Av~~CP~~ai  199 (216)
                      .|+|+|   .|+...|...-.....+.........   +.+.-  -..-++.||++||
T Consensus         1 kCi~Cg---~C~~~CP~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~AI   55 (55)
T PF13187_consen    1 KCIGCG---RCVEACPVGVIEFDEDGGKKVVDKDNERRNAEKCIGCGACVKACPTGAI   55 (55)
T ss_dssp             C--TTT---HHHHHSTTT-EEEETTTTCEECSECCESTTGGG--TTCHHHHHSTTT-E
T ss_pred             CCCCcc---hHHHHCCccCeEccCccccccccccccCCCCCccccHhHHHHHcchhhC
Confidence            477866   78888887776555544433322211   11112  2258889999998

>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional

Probab=83.69  E-value=0.95  Score=33.84  Aligned_cols=59  Identities=22%  Similarity=0.409  Sum_probs=37.7

Q ss_pred             hhhhcccccccCCCCCCCCCCCCCc-eeeeCCCCceeeecCCCChhHHHHHHHhcCCCCCeEecCC
Q 027943          140 DVFVNEVLCVGKGCPYSCVKTAPNA-FSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTP  204 (216)
Q Consensus       140 ~~fvde~~c~g~Gcp~~C~~~~p~~-F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~~  204 (216)
                      .+.+|+..|.++|   .|...+|.. +.+....+. ....  .+.-..-...++.||++||.+..-
T Consensus        36 ~i~i~~~~Ci~C~---~C~~~CP~~ai~~~~~~~~-~~i~--~~~C~~Cg~Cv~~CP~~Ai~~~~~   95 (120)
T PRK08348         36 KILYDVDKCVGCR---MCVTVCPAGVFVYLPEIRK-VALW--TGRCVFCGQCVDVCPTGALQMSDD   95 (120)
T ss_pred             eEEECcccCcCcc---cHHHHCCccceEccccccc-eEec--CCcCcChhhhHHhCCcCcEEeccc
Confidence            4568889999977   899988863 333322121 1122  122233557899999999998863

>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed

Probab=83.48  E-value=0.37  Score=35.14  Aligned_cols=63  Identities=16%  Similarity=0.271  Sum_probs=39.2

Q ss_pred             hhhhhcccccccCCCCCCCCCCCCC-ceeeeCCCCc-----eeeecCCCChhHHHHHHHhcCCCCCeEecCCcc
Q 027943          139 LDVFVNEVLCVGKGCPYSCVKTAPN-AFSYSSSTGT-----ARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQ  206 (216)
Q Consensus       139 ~~~fvde~~c~g~Gcp~~C~~~~p~-~F~~~~~~G~-----ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~~~~  206 (216)
                      ..+.+|+..|.++|   .|+..+|. .|.+......     .....  .+....-...+..||++||.+.....
T Consensus         9 ~~v~id~~~Ci~C~---~Cv~aCP~~ai~~~~~~~~~~~~~~~~i~--~~~C~~C~~C~~~CP~~AI~~~~~~~   77 (103)
T PRK09626          9 TPVWVDESRCKACD---ICVSVCPAGVLAMRIDPHAVLGKMIKVVH--PESCIGCRECELHCPDFAIYVADRKE   77 (103)
T ss_pred             CCeEECcccccCCc---chhhhcChhhhccccccccccCceeeEeC--CccCCCcCcchhhCChhhEEEecccc
Confidence            34567899999977   89999887 5554322111     01111  11112245688999999999987533

>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed

Probab=83.41  E-value=1  Score=32.94  Aligned_cols=59  Identities=24%  Similarity=0.335  Sum_probs=37.2

Q ss_pred             hhhhhcccccccCCCCCCCCCCCCCc-eeeeCCCCceeeecCCCChhHHHHHHHhcCCCCCeEecCC
Q 027943          139 LDVFVNEVLCVGKGCPYSCVKTAPNA-FSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTP  204 (216)
Q Consensus       139 ~~~fvde~~c~g~Gcp~~C~~~~p~~-F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~~  204 (216)
                      +...+|+..|.++|   .|+..+|.. |.+. ..+.. ....  +.-..-...++.||++||.+...
T Consensus        44 ~~p~i~~~~Ci~C~---~C~~~CP~~ai~~~-~~~~~-~id~--~~C~~Cg~Cv~~CP~~AI~~~~~  103 (105)
T PRK09623         44 FMPVVDESKCVKCY---ICWKFCPEPAIYIK-EDGYV-AIDY--DYCKGCGICANECPTKAITMVKE  103 (105)
T ss_pred             eeEEECcccCcccc---chhhhCCHhheEec-CCCcE-EeCc--hhCcCcchhhhhcCcCcEEeccc
Confidence            34567889999977   899988764 3332 22221 2221  11112347899999999998764

>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated

Probab=83.13  E-value=1.9  Score=36.21  Aligned_cols=118  Identities=11%  Similarity=0.052  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHhCCCCCCC---CCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCCCCcchhhhhhhhcccccccC
Q 027943           75 AAELKAAFRAKVKQYHPDVNRD---GRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFDYPECEALDVFVNEVLCVGK  151 (216)
Q Consensus        75 ~~~Ik~ayr~l~~~~HPDk~~~---~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~~~fvde~~c~g~  151 (216)
                      ..+.++....+.+..||-....   ++.  -.++.+...|.+- .  .|-.|.    .+-...+.....+.+|+..|+++
T Consensus        81 ~~~~rk~~l~~ll~~h~~~C~~C~~~g~--C~Lq~~a~~~g~~-~--~~~~~~----~~~~~~d~s~~~i~~d~~kCi~C  151 (234)
T PRK07569         81 LQEYRRMIVELLFAEGNHVCAVCVANGN--CELQDLAIEVGMD-H--VRFPYL----FPRRPVDISHPRFGIDHNRCVLC  151 (234)
T ss_pred             HHHHHHHHHHHHHHhccccCcccCCCCC--cHHHHHHHHhCCC-C--cccCcc----cCCcccccCCCcEEeehhhCcCc
Confidence            4456677777888889985321   122  2355555554422 1  111110    00000011223456889999997


Q ss_pred             CCCCCCCCCCCC-----ceeeeCCCCceeeecCC------CChhHHHHHHHhcCCCCCeEecCC
Q 027943          152 GCPYSCVKTAPN-----AFSYSSSTGTARAISQG------HGQDYRVQLAVGQCPRSCIHYVTP  204 (216)
Q Consensus       152 Gcp~~C~~~~p~-----~F~~~~~~G~ar~~~~~------~~~~~~v~~Av~~CP~~ai~~v~~  204 (216)
                      |   .|+..++.     .|.........++....      ...-..-..-++.||++||.+...
T Consensus       152 g---~Cv~aC~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~C~~Cg~Cv~vCP~gAL~~~~~  212 (234)
T PRK07569        152 T---RCVRVCDEIEGAHTWDVAGRGAKSRVITDLNQPWGTSETCTSCGKCVQACPTGAIFRKGS  212 (234)
T ss_pred             c---HHHHHHHHhcCCceeeecccCCcceEeecCCccccccccccchHHHHHhCCCCcEEecCC
Confidence            7   89888874     22222211222222110      011122357899999999998865

>PRK02651 photosystem I subunit VII; Provisional

Probab=82.82  E-value=0.9  Score=31.29  Aligned_cols=54  Identities=19%  Similarity=0.378  Sum_probs=31.7

Q ss_pred             ccccccCCCCCCCCCCCC-CceeeeCCCC-ceeeecC--CCChhHHHHHHHhcCCCCCeEe
Q 027943          145 EVLCVGKGCPYSCVKTAP-NAFSYSSSTG-TARAISQ--GHGQDYRVQLAVGQCPRSCIHY  201 (216)
Q Consensus       145 e~~c~g~Gcp~~C~~~~p-~~F~~~~~~G-~ar~~~~--~~~~~~~v~~Av~~CP~~ai~~  201 (216)
                      ...|+++|   .|...+| ..|......+ .......  ....-..-...++.||++||.+
T Consensus         8 ~~~Ci~C~---~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~   65 (81)
T PRK02651          8 YDTCIGCT---QCVRACPLDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFLSI   65 (81)
T ss_pred             cccCCCcc---hHHHHCCccceecccccccccCcccccCCCCcCCChhhhhhhcCCCceEE
Confidence            57899977   8999888 4455533221 1111111  1111122358999999999995

>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]

Probab=80.99  E-value=2.4  Score=37.22  Aligned_cols=47  Identities=17%  Similarity=0.422  Sum_probs=29.6

Q ss_pred             CCCCCCCCCCCCCceeeeCCCCceeeecCCCChhH--HHHHHHhcCCCCCeEecC
Q 027943          151 KGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDY--RVQLAVGQCPRSCIHYVT  203 (216)
Q Consensus       151 ~Gcp~~C~~~~p~~F~~~~~~G~ar~~~~~~~~~~--~v~~Av~~CP~~ai~~v~  203 (216)
                      .|||..|+...-.-|++-      .+..+.-+++.  --..-++.||++||.|..
T Consensus       145 sGCPn~C~r~~~~Digiv------Gv~~P~~~~E~c~gc~~cv~~C~~gAI~~~~  193 (317)
T COG2221         145 SGCPNDCTRPQAHDIGIV------GVWKPKVDEELCRGCGKCVKVCPTGAITWDG  193 (317)
T ss_pred             ecCCcccccccccceeEE------EeecCccCHHHhchhHhHHHhCCCCceeecc
Confidence            349999997666666652      33222222211  123778899999999986

>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B

Probab=80.75  E-value=0.65  Score=30.44  Aligned_cols=53  Identities=25%  Similarity=0.507  Sum_probs=24.7

Q ss_pred             hhcccccccCCCCCCCCCCCCC----ceeeeCCCCceeeecCCCChhHHHHHHHhcCCC-CCeEe
Q 027943          142 FVNEVLCVGKGCPYSCVKTAPN----AFSYSSSTGTARAISQGHGQDYRVQLAVGQCPR-SCIHY  201 (216)
Q Consensus       142 fvde~~c~g~Gcp~~C~~~~p~----~F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~-~ai~~  201 (216)
                      .+|+..|+|+|   .|....|.    .+.++.. +...+...   .-.--..=+..||| +||+.
T Consensus         2 ~Id~~~Ci~Cg---~C~~~Cp~~~~~~i~~~~~-~~~~v~~~---~C~GCg~C~~~CPv~~AI~m   59 (59)
T PF14697_consen    2 VIDEDKCIGCG---KCVRACPDGAIDAIEVDEG-KKVPVNPD---KCIGCGLCVKVCPVKDAITM   59 (59)
T ss_dssp             EE-TTT----S---CCCHHCCCCS-S-ECCTTT-TSSECE-T---T--S-SCCCCCSSSTTSEEE
T ss_pred             EECcccccChh---hHHhHcCccceeeEEecCC-eeEEeccc---cCcCcCcccccCCCccCCCC
Confidence            47899999988   89998884    3333222 22222221   10011133458998 99974

...

>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]

Probab=80.54  E-value=0.34  Score=38.66  Aligned_cols=66  Identities=24%  Similarity=0.342  Sum_probs=41.2

Q ss_pred             hhhhhcccccccCCCCCCCCCCCCCce-eeeCCCCceeeecCC----CChhHHHHHHHhcCCCCCeEecCCcchh
Q 027943          139 LDVFVNEVLCVGKGCPYSCVKTAPNAF-SYSSSTGTARAISQG----HGQDYRVQLAVGQCPRSCIHYVTPSQRI  208 (216)
Q Consensus       139 ~~~fvde~~c~g~Gcp~~C~~~~p~~F-~~~~~~G~ar~~~~~----~~~~~~v~~Av~~CP~~ai~~v~~~~~~  208 (216)
                      ..+.||+..|+|+|   .|+..+|+.- .+.+..+.++...+-    .+.+.. ..=|+.||++|+..|+...|.
T Consensus        75 ~~v~V~~ekCiGC~---~C~~aCPfGai~~~~~~~~~~~~a~KCdlC~~~e~g-paCVe~CP~~AL~lv~~~~~~  145 (165)
T COG1142          75 GAVQVDEEKCIGCK---LCVVACPFGAITMVSYPVAAKAVAVKCDLCAGREVG-PACVEACPTEALELVDEIVLE  145 (165)
T ss_pred             CceEEchhhccCcc---hhhhcCCcceEEEEeecCcchhhhhhcccccCccCC-CceeeeCCHHHhhcccHHHhh
Confidence            35689999999977   9999999543 232221111122221    111111 467899999999999977644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	216
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		3e-07
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		1e-06
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		1e-06
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		3e-06
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		5e-06
2ctr_A	88	Solution Structure Of J-Domain From Human Dnaj Subf		1e-05
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		1e-05
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		2e-05
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		2e-05
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		2e-05
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		3e-05
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		3e-05
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		4e-04
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		5e-04
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		6e-04

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
           Y +LGV+P  S  ELK A+R    ++HPD N DG +     ++I QAYE+L++  + +I 
Sbjct: 11  YDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQ---FKQISQAYEVLSDEKKRQIY 67
Query: 124 ER 125
           ++
Sbjct: 68  DQ 69

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRD-SDALIRRIIQAYEILTEYSRLEI 122
           Y IL V  S SA ++K A+R K  Q+HPD N D ++ ++   + + +AYE+L++  + EI
Sbjct: 5   YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI 64
Query: 123 IER 125
            +R
Sbjct: 65  YDR 67

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSR 119
           YAILGV+P+     +K A+R   ++YHPDV+++  D++A  + + +A+E+L +  R
Sbjct: 31  YAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE-NDAEAKFKDLAEAWEVLKDEQR 85

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
           Y +LGV+P+ +  ELK A+R    +YHPD N +  +     ++I QAYE+L++  + E+ 
Sbjct: 9   YDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEK---FKQISQAYEVLSDAKKRELY 65
Query: 124 ER 125
           ++
Sbjct: 66  DK 67

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSR 119
           YAI+GV+P+     +K A+R   ++YHPDV+++  D++A  + + +A+E+L++  R
Sbjct: 8   YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEP-DAEARFKEVAEAWEVLSDEQR 62

>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSR 119
           Y ILGV  S S  ++K AF     +YHPD N+   D++A  R I +AYE L++ +R
Sbjct: 10  YDILGVPKSASERQIKKAFHKLAMKYHPDKNKS-PDAEAKFREIAEAYETLSDANR 64

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
           Y ILGV  +    E++ A++    +YHPD N+  ++++A  + I +AYE+LT+
Sbjct: 6   YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTD 58

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
           Y ILGV  +    E++ A++    +YHPD N+  ++++A  + I +AYE+LT+
Sbjct: 6   YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTD 58

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
           Y ILGV  +    E++ A++    +YHPD N+  ++++A  + I +AYE+LT+
Sbjct: 6   YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTD 58

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
           Y ILGV  + S  E+K A+    K+YHPD N+D   +     ++ +AYE+L++
Sbjct: 10  YQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSD 62

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT 115
           Y +LGV  + S A++K A++   +++HPD N+D    D  I +I +AYEIL+
Sbjct: 20  YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFI-QISKAYEILS 70

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGR-DSDALIRRIIQAYEILTEYSRLEI 122
           Y +LGV+ S S  ++K A+R    ++HPD N D + +++   + + +AYE+L++  +  +
Sbjct: 12  YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSL 71
Query: 123 IERECIDPF 131
            +R   D +
Sbjct: 72  YDRAGCDSW 80

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 37/62 (59%)
Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
           Y +LG++ + ++ ++K ++R    +YHPD N D  ++    + I  A+ ILT+ ++  I 
Sbjct: 20  YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIY 79
Query: 124 ER 125
           ++
Sbjct: 80  DK 81

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
           Y  LG+    S  E+K A+R +  +YHPD N++   ++   + I +AY++L++  + EI 
Sbjct: 6   YQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-PGAEEKFKEIAEAYDVLSDPRKREIF 64
Query: 124 ER 125
           +R
Sbjct: 65  DR 66

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
           Y +LGV PS +  ELK  +R    +YHPD  +   D++   + I +A+EIL +  + EI 
Sbjct: 11  YDLLGVSPSANEQELKKGYRKAALKYHPD--KPTGDTEKF-KEISEAFEILNDPQKREIY 67
Query: 124 ER 125
           ++
Sbjct: 68  DQ 69

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	216
1dax_A	64	Ferredoxin I; electron transport, electron-transfe	2e-14
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	4e-13
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	6e-13
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	1e-12
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	2e-12
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	3e-12
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	7e-12
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	9e-12
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	1e-11
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	2e-11
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	2e-11
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	2e-11
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	3e-11
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	3e-11
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	4e-11
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	4e-11
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	6e-11
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	2e-10
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	3e-10
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	4e-10
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	5e-10
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	6e-10
2guz_A	71	Mitochondrial import inner membrane translocase su	7e-10
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	1e-09
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	1e-09
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	8e-09
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	2e-08
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	3e-08
1dwl_A	59	Ferredoxin I; electron transfer, model, heteronucl	4e-08
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	2e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-07
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	6e-07
1rof_A	60	Ferredoxin; electron transport, iron-sulfur; NMR {	1e-05
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	8e-05
1f2g_A	58	Ferredoxin II; electron transport, FDII desulfovib	2e-04
1sj1_A	66	Ferredoxin; thermostability, iron-sulfur cluster,	3e-04

>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A Length = 64

 Score = 64.4 bits (157), Expect = 2e-14
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 3/65 (4%)

Query: 138 ALDVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRS 197
           A   +V++  C+   C   CV+ AP AF+       A            V+ A+  CP  
Sbjct: 1   ARKFYVDQDECIA--CES-CVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQ 57

Query: 198 CIHYV 202
           CIH+ 
Sbjct: 58  CIHWE 62

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 62.0 bits (151), Expect = 4e-13
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT 115
           Y +LGV  + + A++KAA+  +   YHPD N    ++     RI QAY +L 
Sbjct: 20  YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLG 71

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score = 61.9 bits (151), Expect = 6e-13
 Identities = 19/52 (36%), Positives = 33/52 (63%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT 115
           Y ILGV  +    E++ A++    +YHPD N+  ++++A  + I +AYE+LT
Sbjct: 6   YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLT 57

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score = 61.3 bits (149), Expect = 1e-12
 Identities = 14/52 (26%), Positives = 28/52 (53%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT 115
           Y +LG +   S  ++ A F+ +  + HPD + +   +    +++ +A EILT
Sbjct: 23  YTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILT 74

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 59.2 bits (144), Expect = 2e-12
 Identities = 20/52 (38%), Positives = 31/52 (59%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT 115
           Y ILGV  + S  E+K A+    K+YHPD N+D   +     ++ +AYE+L+
Sbjct: 10  YQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLS 61

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score = 60.1 bits (146), Expect = 3e-12
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT 115
           Y +LG++ + ++ ++K ++R    +YHPD N D  ++    + I  A+ ILT
Sbjct: 20  YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILT 71

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score = 62.6 bits (153), Expect = 7e-12
 Identities = 20/51 (39%), Positives = 36/51 (70%), Gaps = 1/51 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEIL 114
           YAILGV+P+     +K A+R   ++YHPDV+++  D++A  + + +A+E+L
Sbjct: 31  YAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE-NDAEAKFKDLAEAWEVL 80

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 58.1 bits (141), Expect = 9e-12
 Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT 115
           Y ILGV  S S  ++K AF     +YHPD N+   D++A  R I +AYE L+
Sbjct: 10  YDILGVPKSASERQIKKAFHKLAMKYHPDKNKS-PDAEAKFREIAEAYETLS 60

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score = 57.6 bits (140), Expect = 1e-11
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEIL 114
           Y  LG+    S  E+K A+R +  +YHPD N++   ++   + I +AY++L
Sbjct: 6   YQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-PGAEEKFKEIAEAYDVL 55

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score = 57.4 bits (139), Expect = 2e-11
 Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEIL 114
           Y +LGV  + S A++K A++   +++HPD N+D   ++    +I +AYEIL
Sbjct: 20  YRVLGVSRTASQADIKKAYKKLAREWHPDKNKD-PGAEDRFIQISKAYEIL 69

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 57.3 bits (139), Expect = 2e-11
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
           Y ILGV    S  +LK A+R    ++HPD N     +    + I  AY +L+ 
Sbjct: 10  YEILGVSRGASDEDLKKAYRRLALKFHPDKNHA-PGATEAFKAIGTAYAVLSN 61

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 57.4 bits (139), Expect = 2e-11
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT 115
           + +LGV+P  S  E+  A+R      HPD        DA  + ++ A   L 
Sbjct: 30  WDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAF-KAVVNARTALL 80

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 57.0 bits (138), Expect = 3e-11
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT 115
           Y +LGV PS +  ELK  +R    +YHPD      +     + I +A+EIL 
Sbjct: 11  YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEK---FKEISEAFEILN 59

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score = 58.3 bits (141), Expect = 3e-11
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 6/57 (10%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRD------GRDSDALIRRIIQAYEIL 114
           Y+ILG +PS + ++LK  ++  +  YHPD            +       I QA++IL
Sbjct: 13  YSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKIL 69

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 56.3 bits (136), Expect = 4e-11
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 6/57 (10%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRD------GRDSDALIRRIIQAYEIL 114
           Y+ILG +PS + ++LK  ++  +  YHPD            +       I QA++IL
Sbjct: 19  YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKIL 75

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 55.7 bits (135), Expect = 4e-11
 Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 3/51 (5%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEIL 114
           Y +LGV+P  S  ELK A+R    ++HPD N DG +     ++I QAYE+L
Sbjct: 11  YDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQ---FKQISQAYEVL 58

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 58.7 bits (142), Expect = 6e-11
 Identities = 17/52 (32%), Positives = 31/52 (59%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT 115
           Y++LGV  + S+ E++ AF+    + HPD N +  ++     +I +AYE+L 
Sbjct: 5   YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLK 56

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 55.6 bits (134), Expect = 2e-10
 Identities = 12/55 (21%), Positives = 28/55 (50%), Gaps = 6/55 (10%)

Query: 64  YAILGVEPSC--SAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
             +LG+E S   +   ++ A+  K K++HPD   D    +  ++++   Y+ + +
Sbjct: 11  MDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMED 61

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score = 53.8 bits (130), Expect = 3e-10
 Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGR-DSDALIRRIIQAYEIL 114
           Y +L V    S+  +K A+R    ++HPD N + + +++   +++ +AYE+L
Sbjct: 12  YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVL 63

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score = 54.3 bits (131), Expect = 4e-10
 Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDS-DALIRRIIQAYEIL 114
           Y IL V  S SA ++K A+R K  Q+HPD N D ++  +   + + +AYE+L
Sbjct: 5   YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVL 56

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 57.5 bits (138), Expect = 5e-10
 Identities = 17/51 (33%), Positives = 31/51 (60%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEIL 114
           Y++LGV  + S+ E++ AF+    + HPD N +  ++     +I +AYE+L
Sbjct: 24  YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVL 74

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score = 53.5 bits (129), Expect = 6e-10
 Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNR-DGRDSDALIRRIIQAYEIL 114
           Y +LGV+ S S  ++K A+R    ++HPD N  +  +++   + + +AYE+L
Sbjct: 12  YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVL 63

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 52.7 bits (127), Expect = 7e-10
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 59  STSSAYAILGVEPSC-SAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEIL 114
           ++  A  IL +  +  +  +LK   R  +   HPD       S  L  +I +A + L
Sbjct: 12  NSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKG----GSPFLATKINEAKDFL 64

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 52.8 bits (127), Expect = 1e-09
 Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRD-SDALIRRIIQAYEIL 114
            +++        +E K   R    ++HPD N +  D ++ + + +      L
Sbjct: 19  TSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL 70

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 53.2 bits (128), Expect = 1e-09
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 64  YAILGVEP-SCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRR---IIQAYEIL 114
           Y +L V        +L  A+RA  +++HPD  ++  +      R   I  AYE L
Sbjct: 18  YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETL 72

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 52.2 bits (125), Expect = 8e-09
 Identities = 12/55 (21%), Positives = 27/55 (49%), Gaps = 6/55 (10%)

Query: 64  YAILGVEPSCSA--AELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
             +LG+E S       ++ A+  K K++HPD   D    +  ++++   Y+ + +
Sbjct: 14  MDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMED 64

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 50.7 bits (121), Expect = 3e-08
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 7/58 (12%)

Query: 64  YAILGVEPSCSA--AELKAAFRAKVKQYHPDVNRDG-----RDSDALIRRIIQAYEIL 114
           + + G+          L   F+   +QYHPD    G       +      I QA++ L
Sbjct: 4   FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1 Length = 59

 Score = 47.8 bits (114), Expect = 4e-08
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 4/61 (6%)

Query: 141 VFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIH 200
           + ++   C+G  C   CV+  P  F+       A   +     +   Q A+  CP   I 
Sbjct: 2   IVIDHEECIG--CES-CVELCPEVFAMIDGEEKAMVTAPDSTAE-CAQDAIDACPVEAIS 57

Query: 201 Y 201
            
Sbjct: 58  K 58

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 46.5 bits (110), Expect = 2e-07
 Identities = 7/55 (12%), Positives = 18/55 (32%), Gaps = 6/55 (10%)

Query: 64  YAILGVEPSC--SAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
             +L +          ++ A++ +    HPD         AL++ +   +     
Sbjct: 14  LELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKT 64

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG---RDSDALIRRIIQAYEILT 115
           Y ILGV+ +    E+  A+R    Q+HPD  ++    + ++     I  A E+L+
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLS 439

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 47.3 bits (112), Expect = 6e-07
 Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 11/77 (14%)

Query: 57  PPSTSSAYAILGVEPSC-------SAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQ 109
              TS+ Y +                + L+  +R    Q+HPD+ + G +  +    + Q
Sbjct: 7   RRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSS---TLNQ 63

Query: 110 AYEILTE-YSRLEIIER 125
           AY  L +   R + + +
Sbjct: 64  AYHTLKDPLRRSQYMLK 80

>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A Length = 60

 Score = 40.7 bits (96), Expect = 1e-05
 Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 5/60 (8%)

Query: 141 VFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIH 200
           V V+   C+G G    C    P+ F      G A+ +          + A   CP   I 
Sbjct: 3   VRVDADACIGCG---VCENLCPDVFQLGDD-GKAKVLQPETDLP-CAKDAADSCPTGAIS 57

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 41.3 bits (96), Expect = 8e-05
 Identities = 18/100 (18%), Positives = 39/100 (39%), Gaps = 9/100 (9%)

Query: 57  PPSTSSAYAILGVEPSCSA--AELKAAFRAKVKQYHPDVNRDG-----RDSDALIRRIIQ 109
           P  T   ++++    S     A+L+  ++   +  HPD            S+     +  
Sbjct: 39  PDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVND 98

Query: 110 AYEILTE-YSRLE-IIERECIDPFDYPECEALDVFVNEVL 147
           AY+ L    SR   +++   I+  +  + E    F+ E++
Sbjct: 99  AYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIM 138

>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A Length = 58

 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 152 GCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIH 200
            C   CV+  P+ F  +     A  I+     D  V+ A+  CP   I 
Sbjct: 10  ACEA-CVEICPDVFEMNEEGDKAVVINPDSDLD-CVEEAIDSCPAEAIV 56

>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A Length = 66

 Score = 37.3 bits (87), Expect = 3e-04
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 7/63 (11%)

Query: 141 VFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDY---RVQLAVGQCPRS 197
           V V++  C+G      C    P+ F  +   G A+   +    +      + A+  CP S
Sbjct: 4   VSVDQDTCIGDA---ICASLCPDVFEMNDE-GKAQPKVEVIEDEELYNCAKEAMEACPVS 59

Query: 198 CIH 200
            I 
Sbjct: 60  AIT 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	216
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.88
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.87
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.87
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.86
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.86
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.86
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.86
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.86
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.85
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.85
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.85
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.85
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.84
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.84
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.84
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.8
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.8
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.79
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.78
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.76
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.75
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.74
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.74
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.74
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.73
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.72
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.71
2guz_A	71	Mitochondrial import inner membrane translocase su	99.71
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.68
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.68
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.66
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.64
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.64
2guz_B	65	Mitochondrial import inner membrane translocase su	99.2
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.06
1dax_A	64	Ferredoxin I; electron transport, electron-transfe	97.59
1iqz_A	81	Ferredoxin; iron-sulfer protein, ultlahigh resolut	97.54
1dwl_A	59	Ferredoxin I; electron transfer, model, heteronucl	97.07
1rof_A	60	Ferredoxin; electron transport, iron-sulfur; NMR {	96.9
1sj1_A	66	Ferredoxin; thermostability, iron-sulfur cluster,	96.74
1f2g_A	58	Ferredoxin II; electron transport, FDII desulfovib	96.5
1xer_A	103	Ferredoxin; electron transport, iron-sulfur, dupli	93.2
2fgo_A	82	Ferredoxin; allochromatium vinosum, [4Fe-4S] clust	92.12
1rgv_A	80	Ferredoxin; electron transport; 2.90A {Thauera aro	92.04
1jb0_C	80	Photosystem I iron-sulfur center; membrane protein	91.45
2zvs_A	85	Uncharacterized ferredoxin-like protein YFHL; elec	90.75
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	89.92
1bc6_A	77	7-Fe ferredoxin; electron transport, iron-sulfur;	89.34
3eun_A	82	Ferredoxin; electron transport, [4Fe-4S] cluster,	86.45
1h98_A	78	Ferredoxin; electron transport, thermophilic, iron	86.21
1jnr_B	150	Adenylylsulfate reductase; oxidoreductase; HET: FA	80.05

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.88  E-value=9.4e-23  Score=142.64  Aligned_cols=74  Identities=30%  Similarity=0.506  Sum_probs=68.1

Q ss_pred             CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCC
Q 027943           57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP  130 (216)
Q Consensus        57 ~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~  130 (216)
                      .....+||+||||+++++.++||++||+|++++|||+++..+.+.+.|++|++||++|+||.+|..||..|..+
T Consensus         3 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   76 (79)
T 2dn9_A            3 SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP   76 (79)
T ss_dssp             SSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred             CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence            44567899999999999999999999999999999999876778999999999999999999999999988554

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.87  E-value=2.7e-22  Score=141.27  Aligned_cols=74  Identities=24%  Similarity=0.500  Sum_probs=66.7

Q ss_pred             CCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC-cHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943           58 PSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGR-DSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (216)
Q Consensus        58 ~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~-~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~  131 (216)
                      ....+||+||||+++++.++||++||+|++++|||+++... .+.+.|++|++||++|+||.+|..||..|..+.
T Consensus         6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~   80 (82)
T 2ej7_A            6 SGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPS   80 (82)
T ss_dssp             SSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCSC
T ss_pred             CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence            34578999999999999999999999999999999987642 467899999999999999999999999986654

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.87  E-value=6.3e-22  Score=144.36  Aligned_cols=72  Identities=29%  Similarity=0.433  Sum_probs=67.1

Q ss_pred             CCCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhC
Q 027943           56 TPPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIEREC  127 (216)
Q Consensus        56 ~~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g  127 (216)
                      ..+...+||+||||+++++.++||++||+|+++||||+++....+.++|++|++||++|+|+.+|..||...
T Consensus        12 ~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l   83 (99)
T 2yua_A           12 CSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGL   83 (99)
T ss_dssp             CSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTC
T ss_pred             CCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhc
Confidence            356678999999999999999999999999999999999876778999999999999999999999999865

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.86  E-value=4.9e-22  Score=138.38  Aligned_cols=70  Identities=29%  Similarity=0.562  Sum_probs=64.4

Q ss_pred             cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943           61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (216)
Q Consensus        61 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~  131 (216)
                      .+||+||||+++++.++||++||+|++++|||+++. ..+.+.|++|++||++|+||.+|..||..|..++
T Consensus         3 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   72 (77)
T 1hdj_A            3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-PGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGL   72 (77)
T ss_dssp             CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC-TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGC
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCHHHHHHHHHHccccc
Confidence            579999999999999999999999999999999876 4578999999999999999999999999885443

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=5.6e-22  Score=138.42  Aligned_cols=73  Identities=27%  Similarity=0.436  Sum_probs=66.2

Q ss_pred             CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCC
Q 027943           57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP  130 (216)
Q Consensus        57 ~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~  130 (216)
                      .....+||+||||+++++.++||++||+|++++|||++.. ..+.+.|++|++||++|+||.+|..||..|..+
T Consensus         3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   75 (78)
T 2ctp_A            3 SGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA-PGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP   75 (78)
T ss_dssp             CSCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSS-HHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred             CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence            3456789999999999999999999999999999999875 457899999999999999999999999988543

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.86  E-value=2.4e-21  Score=138.33  Aligned_cols=72  Identities=28%  Similarity=0.492  Sum_probs=65.9

Q ss_pred             CCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCC
Q 027943           58 PSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP  130 (216)
Q Consensus        58 ~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~  130 (216)
                      ....+||+||||+++++.++||++||+|++++|||+++. ..+.+.|++|++||++|+||.+|..||..|..+
T Consensus        14 ~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   85 (88)
T 2cug_A           14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD-PGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP   85 (88)
T ss_dssp             SSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCS-TTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred             cCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence            346789999999999999999999999999999999876 457899999999999999999999999998543

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.86  E-value=1.3e-21  Score=134.97  Aligned_cols=68  Identities=35%  Similarity=0.613  Sum_probs=61.7

Q ss_pred             CCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCC
Q 027943           58 PSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECI  128 (216)
Q Consensus        58 ~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~  128 (216)
                      ....+||+||||+++++.++||++||+|++++|||+++..   .+.|++|++||++|+||.+|..||..|.
T Consensus         5 ~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   72 (73)
T 2och_A            5 VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG---AEQFKQISQAYEVLSDEKKRQIYDQGGE   72 (73)
T ss_dssp             -CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC---HHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred             cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH---HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            3457899999999999999999999999999999998653   6899999999999999999999999874

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=1.2e-21  Score=140.93  Aligned_cols=75  Identities=27%  Similarity=0.571  Sum_probs=67.3

Q ss_pred             CCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC-cHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCCC
Q 027943           58 PSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGR-DSDALIRRIIQAYEILTEYSRLEIIERECIDPFD  132 (216)
Q Consensus        58 ~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~-~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~  132 (216)
                      ....+||+||||+++++.++||++||+|+++||||+++... .+.++|++|++||++|+||.+|..||..+..++.
T Consensus         6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   81 (92)
T 2dmx_A            6 SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWR   81 (92)
T ss_dssp             CCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSC
T ss_pred             CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence            34578999999999999999999999999999999987643 5788999999999999999999999999866544

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=8.7e-22  Score=146.72  Aligned_cols=76  Identities=20%  Similarity=0.308  Sum_probs=69.4

Q ss_pred             CCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCCCC
Q 027943           58 PSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFDY  133 (216)
Q Consensus        58 ~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~  133 (216)
                      ....+||+||||+++++.++||+|||+|++++|||+++.+..+.++|++|++||++|+||.+|..||..+..++..
T Consensus        17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~   92 (112)
T 2ctq_A           17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQMSM   92 (112)
T ss_dssp             CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTCSS
T ss_pred             cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhccCC
Confidence            4467899999999999999999999999999999999876788999999999999999999999999987665543

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=1.6e-21  Score=139.19  Aligned_cols=71  Identities=37%  Similarity=0.530  Sum_probs=65.0

Q ss_pred             CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCC
Q 027943           57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECI  128 (216)
Q Consensus        57 ~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~  128 (216)
                      .....+||+||||+++++.++||++||+|++++|||+++. ..+.++|++|++||++|+||.+|..||..+.
T Consensus         3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   73 (88)
T 2ctr_A            3 SGSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS-PDAEAKFREIAEAYETLSDANRRKEYDTLGH   73 (88)
T ss_dssp             SCCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCS-HHHHHHHHHHHHHHHHHHSSHHHHHHHHTCH
T ss_pred             CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-hHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence            3456789999999999999999999999999999999874 4678999999999999999999999999873

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.85  E-value=2.2e-21  Score=143.82  Aligned_cols=73  Identities=26%  Similarity=0.449  Sum_probs=67.1

Q ss_pred             CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCC
Q 027943           57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECID  129 (216)
Q Consensus        57 ~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~  129 (216)
                      .....++|+||||+++++.++||++||+|++++|||+++....+.++|++|++||++|+|+.+|..||..|..
T Consensus        13 ~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~   85 (109)
T 2ctw_A           13 STSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSL   85 (109)
T ss_dssp             TSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHH
T ss_pred             CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhccc
Confidence            4456789999999999999999999999999999999987667889999999999999999999999998743

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.85  E-value=1.8e-21  Score=140.43  Aligned_cols=72  Identities=24%  Similarity=0.360  Sum_probs=65.3

Q ss_pred             CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC------CcHHHHHHHHHHHHHHhcCchhHHHHHhhCC
Q 027943           57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG------RDSDALIRRIIQAYEILTEYSRLEIIERECI  128 (216)
Q Consensus        57 ~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~------~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~  128 (216)
                      .+...+||+||||+++++.++||+|||+|+++||||+++..      ..+.+.|++|++||++|+||.+|..||....
T Consensus        12 ~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   89 (94)
T 1wjz_A           12 QTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS   89 (94)
T ss_dssp             SSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred             cCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence            45678999999999999999999999999999999998743      3477899999999999999999999999864

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.84  E-value=5.5e-21  Score=137.53  Aligned_cols=67  Identities=31%  Similarity=0.544  Sum_probs=62.3

Q ss_pred             CCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhC
Q 027943           58 PSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIEREC  127 (216)
Q Consensus        58 ~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g  127 (216)
                      ....+||+||||+++++.++||++||+|++++|||+++..   .++|++|++||++|+||.+|..||.++
T Consensus         5 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~   71 (92)
T 2o37_A            5 VKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREIYDQYG   71 (92)
T ss_dssp             CSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC---HHHHHHHHHHHHHHTSHHHHHHHHHHC
T ss_pred             ccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh---HHHHHHHHHHHHHHCCHHHHHHHHHHC
Confidence            3567899999999999999999999999999999998654   679999999999999999999999987

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.84  E-value=1.1e-21  Score=144.07  Aligned_cols=73  Identities=27%  Similarity=0.545  Sum_probs=67.4

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCCC
Q 027943           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFD  132 (216)
Q Consensus        60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~  132 (216)
                      ..+||+||||+++++.++||++||+|++++|||+++....+.++|++|++||++|+||.+|..||..+..++.
T Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~   74 (103)
T 1bq0_A            2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFE   74 (103)
T ss_dssp             CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSC
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhc
Confidence            3579999999999999999999999999999999987677899999999999999999999999999866544

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.84  E-value=3.2e-21  Score=140.60  Aligned_cols=71  Identities=35%  Similarity=0.563  Sum_probs=63.5

Q ss_pred             cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC-cHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943           61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGR-DSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (216)
Q Consensus        61 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~-~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~  131 (216)
                      .+||+||||+++++.++||++||+|++++|||+++... .+.+.|++|++||++|+|+.+|..||..|..++
T Consensus         2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~   73 (99)
T 2lgw_A            2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGL   73 (99)
T ss_dssp             CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC--
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccc
Confidence            57999999999999999999999999999999987653 478899999999999999999999999875443

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.80  E-value=1.9e-20  Score=138.75  Aligned_cols=73  Identities=23%  Similarity=0.290  Sum_probs=65.4

Q ss_pred             CCccchhhhhCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC---CCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCC
Q 027943           58 PSTSSAYAILGVEPSC-SAAELKAAFRAKVKQYHPDVNRD---GRDSDALIRRIIQAYEILTEYSRLEIIERECIDP  130 (216)
Q Consensus        58 ~~~~~~y~iLgv~~~a-s~~~Ik~ayr~l~~~~HPDk~~~---~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~  130 (216)
                      ....+||+||||++++ +.++||+|||+|++++|||++++   ...+.+.|++|++||++|+||.+|+.||..+.++
T Consensus        12 ~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~~   88 (109)
T 2qsa_A           12 CGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDHP   88 (109)
T ss_dssp             TTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCT
T ss_pred             cCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccCc
Confidence            3457899999999999 99999999999999999999875   2347889999999999999999999999988544

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.80  E-value=1.1e-19  Score=142.68  Aligned_cols=71  Identities=24%  Similarity=0.344  Sum_probs=64.1

Q ss_pred             CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCc------HHHHHHHHHHHHHHhcCchhHHHHHhhC
Q 027943           57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRD------SDALIRRIIQAYEILTEYSRLEIIEREC  127 (216)
Q Consensus        57 ~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~------~~~~f~~i~~Ay~~L~d~~~R~~yd~~g  127 (216)
                      .+...+||+||||+++++.++||+|||+|++++||||++....      +.+.|++|++||++|+||.+|+.||..+
T Consensus         6 ~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~   82 (155)
T 2l6l_A            6 QMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQR   82 (155)
T ss_dssp             CCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHH
T ss_pred             cCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            4556899999999999999999999999999999999887542      5689999999999999999999999754

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.79  E-value=1.1e-19  Score=147.91  Aligned_cols=71  Identities=24%  Similarity=0.409  Sum_probs=66.4

Q ss_pred             cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943           61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (216)
Q Consensus        61 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~  131 (216)
                      .+||+||||+++++.++||+|||+|++++|||+++...++.++|++|++||++|+||.+|+.||..|..+.
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~   72 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGL   72 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTC
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhccccc
Confidence            57999999999999999999999999999999998777889999999999999999999999999886543

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.78  E-value=1.9e-19  Score=128.94  Aligned_cols=61  Identities=23%  Similarity=0.395  Sum_probs=56.6

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHH
Q 027943           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLE  121 (216)
Q Consensus        60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~  121 (216)
                      ..+||+||||+++++.++||++||+|+++||||+++. ..+.+.|++|++||++|+|+.+|.
T Consensus        26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~   86 (90)
T 2ys8_A           26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA-PGSEDAFKAVVNARTALLKNIKSG   86 (90)
T ss_dssp             CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCC-TTHHHHHHHHHHHHHHHHHHHCCS
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCccccc
Confidence            4689999999999999999999999999999999876 457899999999999999998875

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.76  E-value=5.3e-19  Score=123.69  Aligned_cols=66  Identities=11%  Similarity=0.095  Sum_probs=57.4

Q ss_pred             ccchhhhhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCC
Q 027943           60 TSSAYAILGVEPS--CSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDP  130 (216)
Q Consensus        60 ~~~~y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~  130 (216)
                      ..++|+||||+++  ++.++||+|||+|++++|||++++    .+.|++|++||++|+|+.+|.. +.+|..+
T Consensus        10 ~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~----~~~f~~i~~AYe~L~~~~~r~~-~~~g~~~   77 (79)
T 1faf_A           10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYNLR-MNLGGTG   77 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHHHHHHHT-TCCSSCC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHHhhHHHHHH-HhcCCcc
Confidence            4679999999999  999999999999999999999643    6899999999999999998876 3344433

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.75  E-value=2.2e-18  Score=141.12  Aligned_cols=83  Identities=17%  Similarity=0.255  Sum_probs=69.0

Q ss_pred             CCCcccccccccCCCCCCCCCccchhhhhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCc-----HHHHHHHHHHHH
Q 027943           39 PSKFTVNCTERTGENASTPPSTSSAYAILGVEPS--CSAAELKAAFRAKVKQYHPDVNRDGRD-----SDALIRRIIQAY  111 (216)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~~-----~~~~f~~i~~Ay  111 (216)
                      ...|+..|.....     +....+||+||||+++  ++.++||++||+|+++||||++++.+.     +.+.|++|++||
T Consensus        26 ~~~fC~~c~~~q~-----~~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY  100 (207)
T 3bvo_A           26 DRFFCPQCRALQA-----PDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAY  100 (207)
T ss_dssp             CCCBCTTTCCBCC-----CCTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccCC-----CCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            3567777775442     2345789999999986  799999999999999999999876543     456899999999


Q ss_pred             HHhcCchhHHHHHhh
Q 027943          112 EILTEYSRLEIIERE  126 (216)
Q Consensus       112 ~~L~d~~~R~~yd~~  126 (216)
                      +||+||.+|+.||..
T Consensus       101 ~vLsdp~~R~~Yd~~  115 (207)
T 3bvo_A          101 KTLLAPLSRGLYLLK  115 (207)
T ss_dssp             HHHHSHHHHHHHHHH
T ss_pred             HHHCCHHHHHHHHHH
Confidence            999999999999964

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.74  E-value=7.9e-19  Score=125.16  Aligned_cols=65  Identities=14%  Similarity=0.182  Sum_probs=58.5

Q ss_pred             CCCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC-cHHHHHHHHHHHHHHhcCchhH
Q 027943           56 TPPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGR-DSDALIRRIIQAYEILTEYSRL  120 (216)
Q Consensus        56 ~~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~-~~~~~f~~i~~Ay~~L~d~~~R  120 (216)
                      .+....++|+||||+++++.++||+|||+|+++||||+++... .+.++|++|++||++|+|...|
T Consensus        11 ~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r   76 (88)
T 1iur_A           11 RGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL   76 (88)
T ss_dssp             SSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence            4566789999999999999999999999999999999987652 4789999999999999998766

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.74  E-value=9.6e-20  Score=135.89  Aligned_cols=64  Identities=19%  Similarity=0.331  Sum_probs=59.2

Q ss_pred             ccchhhhhCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhC
Q 027943           60 TSSAYAILGVEPSCSA--AELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIEREC  127 (216)
Q Consensus        60 ~~~~y~iLgv~~~as~--~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g  127 (216)
                      ..++|+||||+++++.  ++||+|||+|++++|||+++.    .++|++|++||++|+||.+|+.||.+|
T Consensus         7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~----~e~f~~I~~AYevL~d~~~R~~~~~~~   72 (114)
T 1gh6_A            7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFG   72 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred             hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc----HHHHHHHHHHHHHHCCHHHHHHhhhcc
Confidence            4689999999999998  999999999999999999765    468999999999999999999999765

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.73  E-value=2.4e-19  Score=156.42  Aligned_cols=70  Identities=30%  Similarity=0.569  Sum_probs=0.0

Q ss_pred             CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhC
Q 027943           57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIEREC  127 (216)
Q Consensus        57 ~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g  127 (216)
                      .+...|||+||||+++|+.++||+|||+|+++||||+++.+ .++++|++|++||++|+||.+|+.||+++
T Consensus        24 ~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~-~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~   93 (329)
T 3lz8_A           24 AMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN-DAEAKFKDLAEAWEVLKDEQRRAEYDQLW   93 (329)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             cccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCCh-HHHHHHHHHHHHHHHhhhhhhhcccchhh
Confidence            45668999999999999999999999999999999998764 67899999999999999999999999974

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.72  E-value=4.5e-18  Score=135.51  Aligned_cols=66  Identities=20%  Similarity=0.248  Sum_probs=60.7

Q ss_pred             chhhhhCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCCc-----HHHHHHHHHHHHHHhcCchhHHHHHhhC
Q 027943           62 SAYAILGVEPSC--SAAELKAAFRAKVKQYHPDVNRDGRD-----SDALIRRIIQAYEILTEYSRLEIIEREC  127 (216)
Q Consensus        62 ~~y~iLgv~~~a--s~~~Ik~ayr~l~~~~HPDk~~~~~~-----~~~~f~~i~~Ay~~L~d~~~R~~yd~~g  127 (216)
                      +||+||||++++  +..+||++||+|+++||||++++.+.     +.+.|+.|++||+||+||.+|..||...
T Consensus         2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l   74 (171)
T 1fpo_A            2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL   74 (171)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHh
Confidence            799999999998  99999999999999999999887543     4578999999999999999999999875

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.71  E-value=5.4e-19  Score=140.58  Aligned_cols=65  Identities=18%  Similarity=0.296  Sum_probs=57.5

Q ss_pred             ccchhhhhCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCC
Q 027943           60 TSSAYAILGVEPSCS--AAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECI  128 (216)
Q Consensus        60 ~~~~y~iLgv~~~as--~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~  128 (216)
                      ..++|+||||+++|+  .++||+|||+|++++|||++++    +++|++|++||++|+||.+|+.||++|.
T Consensus        10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~----~e~F~~I~~AYevLsdp~kR~~YD~~G~   76 (174)
T 2pf4_E           10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGG   76 (174)
T ss_dssp             HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C----CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred             cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            468999999999998  6999999999999999999765    3689999999999999999999999883

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.71  E-value=5.2e-18  Score=116.23  Aligned_cols=60  Identities=23%  Similarity=0.267  Sum_probs=53.6

Q ss_pred             CCCccchhhhhCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhH
Q 027943           57 PPSTSSAYAILGVEP-SCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRL  120 (216)
Q Consensus        57 ~~~~~~~y~iLgv~~-~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R  120 (216)
                      .++..++|+||||++ +++.++||++||+|++++|||+++    +.+.|++|++||++|+++..|
T Consensus        10 ~m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g----~~~~f~~i~~Aye~L~~~~~r   70 (71)
T 2guz_A           10 KMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGG----SPFLATKINEAKDFLEKRGIS   70 (71)
T ss_dssp             SCCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTC----CHHHHHHHHHHHHHHHHHCCC
T ss_pred             CCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCC----CHHHHHHHHHHHHHHhhhhhc
Confidence            566789999999999 799999999999999999999953    367999999999999987655

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.68  E-value=4.9e-18  Score=135.92  Aligned_cols=63  Identities=13%  Similarity=0.255  Sum_probs=58.4

Q ss_pred             cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCc---HHHHHHHHHHHHHHhcCchhHHHH
Q 027943           61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRD---SDALIRRIIQAYEILTEYSRLEII  123 (216)
Q Consensus        61 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~---~~~~f~~i~~Ay~~L~d~~~R~~y  123 (216)
                      .++|+||||+++++.++||+|||+|++++||||++....   +.++|++|++||++|+|+.+|+.|
T Consensus       117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            589999999999999999999999999999999876543   788999999999999999999866

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.68  E-value=1e-17  Score=120.05  Aligned_cols=56  Identities=13%  Similarity=0.241  Sum_probs=51.1

Q ss_pred             cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCc---HHHHHHHHHHHHHHhcC
Q 027943           61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRD---SDALIRRIIQAYEILTE  116 (216)
Q Consensus        61 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~---~~~~f~~i~~Ay~~L~d  116 (216)
                      .++|++|||++.++.++||+|||+++++|||||+++.+.   ++++|+.|++||++|.+
T Consensus        33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            468999999999999999999999999999999876542   78899999999999975

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.66  E-value=3.9e-17  Score=131.10  Aligned_cols=66  Identities=21%  Similarity=0.279  Sum_probs=59.1

Q ss_pred             Cccchhhhh------CCCC-CCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhC
Q 027943           59 STSSAYAIL------GVEP-SCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIEREC  127 (216)
Q Consensus        59 ~~~~~y~iL------gv~~-~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g  127 (216)
                      ...+||+||      |+++ +++..+||++||+|++++|||+++.   +.+.|++|++||++|+||.+|..||...
T Consensus         9 ~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~---a~~~f~~i~~AY~vL~dp~~R~~Yd~~l   81 (181)
T 3uo3_A            9 FTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ---GSEQSSTLNQAYHTLKDPLRRSQYMLKL   81 (181)
T ss_dssp             CSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS---CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred             CCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc---HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence            456899999      4655 8999999999999999999999875   4678999999999999999999999854

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.64  E-value=2.4e-17  Score=157.61  Aligned_cols=75  Identities=23%  Similarity=0.375  Sum_probs=40.7

Q ss_pred             CCCccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943           57 PPSTSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (216)
Q Consensus        57 ~~~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~  131 (216)
                      .....+||+||||+++|+.++||+|||+|+++||||+++....+.++|++|++||++|+||.+|+.||++|..+.
T Consensus        17 ~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~   91 (780)
T 3apo_A           17 GRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGL   91 (780)
T ss_dssp             ------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC-----
T ss_pred             CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhccccc
Confidence            345678999999999999999999999999999999997667788999999999999999999999999885543

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.64  E-value=3.8e-17  Score=120.30  Aligned_cols=57  Identities=9%  Similarity=0.184  Sum_probs=50.9

Q ss_pred             cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC-------cHHHHHHHHHHHHHHhcCch
Q 027943           61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGR-------DSDALIRRIIQAYEILTEYS  118 (216)
Q Consensus        61 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~-------~~~~~f~~i~~Ay~~L~d~~  118 (216)
                      .+||+|||++. |+.++||+|||+|+++|||||++..+       .++++|++|++||++|+|+.
T Consensus        41 ~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           41 SGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             SCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            67999999986 99999999999999999999986422       35789999999999999975

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.20  E-value=1.3e-11  Score=82.62  Aligned_cols=55  Identities=18%  Similarity=0.156  Sum_probs=48.5

Q ss_pred             CccchhhhhCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCc
Q 027943           59 STSSAYAILGVEPS---CSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEY  117 (216)
Q Consensus        59 ~~~~~y~iLgv~~~---as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~  117 (216)
                      +..+.|.||||+++   ++.++|+++||+|+..+|||+.    ++.....+|++|+++|...
T Consensus         2 t~~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkG----GS~yl~~ki~~Ake~l~~~   59 (65)
T 2guz_B            2 TLDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKG----GSFYLQSKVYRAAERLKWE   59 (65)
T ss_dssp             CHHHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGT----CCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCC----CCHHHHHHHHHHHHHHHHH
Confidence            44678999999999   9999999999999999999994    4477888999999999754

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.06  E-value=6.7e-11  Score=103.17  Aligned_cols=66  Identities=24%  Similarity=0.380  Sum_probs=55.0

Q ss_pred             cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---CcHHHHHHHHHHHHHHhcCchhHHHHHhh
Q 027943           61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG---RDSDALIRRIIQAYEILTEYSRLEIIERE  126 (216)
Q Consensus        61 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~---~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~  126 (216)
                      .++|++||+.+.++.++|+++|+++++++|||+.+.+   ..+.+.|++|++||++|+|+.+|..||++
T Consensus       382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~g  450 (450)
T 2y4t_A          382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDG  450 (450)
T ss_dssp             CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC------
T ss_pred             hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccCC
Confidence            3799999999999999999999999999999998754   24778999999999999999999999973

>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A

Probab=97.59  E-value=2.3e-05  Score=50.90  Aligned_cols=61  Identities=28%  Similarity=0.542  Sum_probs=44.6

Q ss_pred             hhhhcccccccCCCCCCCCCCCCCceeeeCCCCceeeecCCCChhHHHHHHHhcCCCCCeEecC
Q 027943          140 DVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVT  203 (216)
Q Consensus       140 ~~fvde~~c~g~Gcp~~C~~~~p~~F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~  203 (216)
                      .+.+|+..|.|+|   .|+...|..|.+++..|.+.+.....+.-......++.||++||.+.+
T Consensus         3 ~~~id~~~C~~Cg---~C~~~CP~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~~   63 (64)
T 1dax_A            3 KFYVDQDECIACE---SCVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCIHWED   63 (64)
T ss_dssp             CCEECSTTCCSCC---HHHHHCTTTEEECSSSSSEEECCGGGSCHHHHHHHHHHSSSCCEECCC
T ss_pred             EEEEccccCCCch---HHHHhCCccEeEcCCCCEEEEecCCCcchhHHHHHHHhCCHhhEeeec
Confidence            3568889999987   899999999988654355444332223344567899999999999864

>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*

Probab=97.54  E-value=3.8e-05  Score=52.48  Aligned_cols=61  Identities=21%  Similarity=0.364  Sum_probs=44.7

Q ss_pred             hhhhcccccccCCCCCCCCCCCCCceeeeCCCCceeeecC--------CCChhHHHHHHHhcCCCCCeEecCC
Q 027943          140 DVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQ--------GHGQDYRVQLAVGQCPRSCIHYVTP  204 (216)
Q Consensus       140 ~~fvde~~c~g~Gcp~~C~~~~p~~F~~~~~~G~ar~~~~--------~~~~~~~v~~Av~~CP~~ai~~v~~  204 (216)
                      .+.+|+..|.|+|   .|+..+|..|.+++ .|.+.+...        ..+.......+++.||++||++...
T Consensus         3 ~v~vd~~~CigCg---~C~~~CP~~~~~~~-~g~~~~~~~~~~~~~~~~~~~c~~C~~C~~~CP~~AI~~~~~   71 (81)
T 1iqz_A            3 YTIVDKETCIACG---ACGAAAPDIYDYDE-DGIAYVTLDDNQGIVEVPDILIDDMMDAFEGCPTDSIKVADE   71 (81)
T ss_dssp             EEEECTTTCCCCS---HHHHHCTTTEEECT-TSCEEETTTTTSSCSCCCGGGHHHHHHHHHHCTTCCEEEESS
T ss_pred             EEEEecccCcccC---hhhHhCchheeeCC-CCeEEEeccCccccCCCCHHHHHHHHHHHHhCCHhHEEEecC
Confidence            3568999999988   89999999999853 355444321        1123345678999999999999764

>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1

Probab=97.07  E-value=0.00029  Score=44.39  Aligned_cols=57  Identities=23%  Similarity=0.425  Sum_probs=39.4

Q ss_pred             hhhcccccccCCCCCCCCCCCCCceeeeCCCCceee-ecCCCChhHHHHHHHhcCCCCCeEec
Q 027943          141 VFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARA-ISQGHGQDYRVQLAVGQCPRSCIHYV  202 (216)
Q Consensus       141 ~fvde~~c~g~Gcp~~C~~~~p~~F~~~~~~G~ar~-~~~~~~~~~~v~~Av~~CP~~ai~~v  202 (216)
                      +.+|+..|.|+|   .|....|..|.+....|...+ ...  +.-......++.||++||.|.
T Consensus         2 i~i~~~~C~~C~---~C~~~Cp~~~~~~~~~~~~~~~~~~--~~c~~C~~C~~~CP~~Ai~~~   59 (59)
T 1dwl_A            2 IVIDHEECIGCE---SCVELCPEVFAMIDGEEKAMVTAPD--STAECAQDAIDACPVEAISKE   59 (59)
T ss_dssp             EEESSCCCSSCC---GGGGTSTTTEEEEECSSCEEESCTT--CCCGGGGTGGGGSTTCCEEEC
T ss_pred             eEEChhhCcChh---HHHHHCCHHheecCCCCcEEEecCh--hhhhHHHHHHHhCCHhhEEcC
Confidence            356888999977   899999998887333444443 222  222234568899999999984

>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A

Probab=96.90  E-value=0.00081  Score=42.36  Aligned_cols=58  Identities=24%  Similarity=0.454  Sum_probs=39.6

Q ss_pred             hhhcccccccCCCCCCCCCCCCCceeeeCCCCceeeecCCCChhHHHHHHHhcCCCCCeEecC
Q 027943          141 VFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVT  203 (216)
Q Consensus       141 ~fvde~~c~g~Gcp~~C~~~~p~~F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~  203 (216)
                      +.+|+..|.|+|   .|+...|..|.++.. |...+.. ..+.-......++.||++||.+.+
T Consensus         3 ~~i~~~~C~~C~---~C~~~Cp~~~~~~~~-~~~~~~~-~~~~c~~C~~C~~~CP~~Ai~~~~   60 (60)
T 1rof_A            3 VRVDADACIGCG---VCENLCPDVFQLGDD-GKAKVLQ-PETDLPCAKDAADSCPTGAISVEE   60 (60)
T ss_dssp             SEECTTTCCSCC---SSTTTCTTTBCCCSS-SCCCBSC-SSCCSTTHHHHHHHCTTCCEECCC
T ss_pred             EEEchhhCCCCh---HHHHhCcHHHeECCC-CCEeecC-chhhHHHHHHHHHhCCHhHEEEeC
Confidence            457888999977   899999988876433 4333332 112222345789999999999863

>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A

Probab=96.74  E-value=0.0006  Score=43.87  Aligned_cols=60  Identities=23%  Similarity=0.436  Sum_probs=41.8

Q ss_pred             hhhhcccccccCCCCCCCCCCCCCceeeeCCCCceeeecCC-CC-h-hHHHHHHHhcCCCCCeEecC
Q 027943          140 DVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQG-HG-Q-DYRVQLAVGQCPRSCIHYVT  203 (216)
Q Consensus       140 ~~fvde~~c~g~Gcp~~C~~~~p~~F~~~~~~G~ar~~~~~-~~-~-~~~v~~Av~~CP~~ai~~v~  203 (216)
                      .+.+|+..|.|+|   .|+...|..|.+++ .|...+.... .+ . .......++.||++||.+.+
T Consensus         3 ~~~id~~~C~~C~---~C~~~Cp~~~~~~~-~~~~~~~~~~~~~~~~c~~c~~C~~~CP~~Ai~~~~   65 (66)
T 1sj1_A            3 KVSVDQDTCIGDA---ICASLCPDVFEMND-EGKAQPKVEVIEDEELYNCAKEAMEACPVSAITIEE   65 (66)
T ss_dssp             EEEECTTTCCCCC---HHHHHCTTTEEECT-TSCEEESCSCBCCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred             EEEECcccCcCch---HHHHhCCceEEECC-CCceeecccCCCcHHHHHHHHHHHhhCCHhhEEEec
Confidence            3567889999977   89999999888853 3444443322 12 1 22356889999999999853

>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A

Probab=96.50  E-value=0.0011  Score=41.66  Aligned_cols=57  Identities=23%  Similarity=0.411  Sum_probs=39.2

Q ss_pred             hhhcccccccCCCCCCCCCCCCCceeeeCCCCceeeecCCCChhHHHHHHHhcCCCCCeEec
Q 027943          141 VFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYV  202 (216)
Q Consensus       141 ~fvde~~c~g~Gcp~~C~~~~p~~F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v  202 (216)
                      +.+| ..|.++|   .|+...|..|.+++. |.........+.-......++.||++||.+.
T Consensus         2 v~id-~~C~~C~---~C~~~CP~~~~~~~~-~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~   58 (58)
T 1f2g_A            2 IEVN-DDCMACE---ACVEICPDVFEMNEE-GDKAVVINPDSDLDCVEEAIDSCPAEAIVRS   58 (58)
T ss_dssp             CBCT-TTCCCCC---HHHHHCTTTEEECSS-SSSEEESCTTCCSTHHHHHHHTCSSCCCBCC
T ss_pred             cEEC-CcCccch---HHHHhCCccEEECCC-CcEEEeCCCccchHHHHHHHhhCChhhEEeC
Confidence            3567 8899977   899999998877433 4433433112223346788999999999863

>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A

Probab=93.20  E-value=0.013  Score=41.19  Aligned_cols=62  Identities=24%  Similarity=0.438  Sum_probs=38.6

Q ss_pred             hhhhhcccccccCCCCCCCCCCCC-CceeeeCCCCceeeec--CCCChhHH--HHHHHhcCCCCCeEecC
Q 027943          139 LDVFVNEVLCVGKGCPYSCVKTAP-NAFSYSSSTGTARAIS--QGHGQDYR--VQLAVGQCPRSCIHYVT  203 (216)
Q Consensus       139 ~~~fvde~~c~g~Gcp~~C~~~~p-~~F~~~~~~G~ar~~~--~~~~~~~~--v~~Av~~CP~~ai~~v~  203 (216)
                      ..+.+|...|.++|   .|+..+| ..|.+.+..+......  ...+.+.-  -...+..||++||.|..
T Consensus        36 ~~~~id~~~C~~Cg---~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~~  102 (103)
T 1xer_A           36 TIVGVDFDLCIADG---SCINACPVNVFQWYDTPGHPASEKKADPVNEQACIFCMACVNVCPVAAIDVKP  102 (103)
T ss_dssp             SSEEEETTTCCCCC---HHHHHCTTCCCEEEECTTCSSCSEEEECTTGGGCCCCCHHHHHCTTCCEEECC
T ss_pred             ceEEEehhhCCChh---hHHHHcCccCeecccccCccccccceeecCcccccChhhHHHhccccceEecC
Confidence            34668899999977   8999998 6777654433211000  01111111  23678899999999864

>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}

Probab=92.12  E-value=0.057  Score=36.21  Aligned_cols=58  Identities=19%  Similarity=0.276  Sum_probs=35.5

Q ss_pred             hhcccccccCCCCCCCCCCCC-CceeeeCCCCceeeecC-CCChh---HHHHHHHhcCCCCCeEecCCc
Q 027943          142 FVNEVLCVGKGCPYSCVKTAP-NAFSYSSSTGTARAISQ-GHGQD---YRVQLAVGQCPRSCIHYVTPS  205 (216)
Q Consensus       142 fvde~~c~g~Gcp~~C~~~~p-~~F~~~~~~G~ar~~~~-~~~~~---~~v~~Av~~CP~~ai~~v~~~  205 (216)
                      +++...|.++|   .|+..+| ..+.+.+.  .. .... .-..-   .....-++.||++||.+....
T Consensus         2 ~~~~~~C~~C~---~C~~~CP~~ai~~~~~--~~-~~~~~~C~~C~~~~~~~~C~~~CP~~Ai~~~~~~   64 (82)
T 2fgo_A            2 LKITDDCINCD---VCEPECPNGAISQGEE--IY-VIDPNLCTECVGHYDEPQCQQVCPVDCIPLDDAN   64 (82)
T ss_dssp             BCCCTTCCCCC---TTGGGCTTCCEEECSS--SE-EECTTTCCTTTTTCSSCHHHHHCTTCCCCBCTTS
T ss_pred             ceeCCCCCChh---hHHHHCChhccCCCCC--eE-EEEchhCccCCCcCCCCHhHhhCCcccEEccCCC
Confidence            45778899977   8999999 56766432  21 2221 11100   000156889999999997644

>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1

Probab=92.04  E-value=0.059  Score=35.92  Aligned_cols=59  Identities=15%  Similarity=0.215  Sum_probs=35.1

Q ss_pred             hhcccccccCCCCCCCCCCCC-CceeeeCCCCceeeecCCCChh---HHHHHHHhcCCCCCeEecCCc
Q 027943          142 FVNEVLCVGKGCPYSCVKTAP-NAFSYSSSTGTARAISQGHGQD---YRVQLAVGQCPRSCIHYVTPS  205 (216)
Q Consensus       142 fvde~~c~g~Gcp~~C~~~~p-~~F~~~~~~G~ar~~~~~~~~~---~~v~~Av~~CP~~ai~~v~~~  205 (216)
                      ++|...|.++|   .|+..+| ..+.+.+.  ........-..-   .....-++.||++||.+....
T Consensus         2 ~~~~~~C~~C~---~C~~~CP~~ai~~~~~--~~~~~~~~C~~C~~~~~~~~C~~~CP~~Ai~~~~~~   64 (80)
T 1rgv_A            2 LYINDDCTACD---ACVEECPNEAITPGDP--IYVIDPTKCSECVGAFDEPQCRLVCPADCIPDNPDY   64 (80)
T ss_dssp             BCCCSCCCCCC---TTTTTCTTCCEECCSS--SCEECTTTCCTTTTTCSSCHHHHHCSSCCCCBCGGG
T ss_pred             eEeCCCCcChh---hHHHHcChhccCcCCC--eeEEcchhCcCCCCcCCccHHHHhcCcccEEecCCc
Confidence            45678899977   8999999 46666432  211111111100   001156789999999987643

>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*

Probab=91.45  E-value=0.016  Score=38.47  Aligned_cols=60  Identities=17%  Similarity=0.332  Sum_probs=36.4

Q ss_pred             hhhcccccccCCCCCCCCCCCC-CceeeeCCCCc-eeeecCCCChh--HHHHHHHhcCCCCCeEecC
Q 027943          141 VFVNEVLCVGKGCPYSCVKTAP-NAFSYSSSTGT-ARAISQGHGQD--YRVQLAVGQCPRSCIHYVT  203 (216)
Q Consensus       141 ~fvde~~c~g~Gcp~~C~~~~p-~~F~~~~~~G~-ar~~~~~~~~~--~~v~~Av~~CP~~ai~~v~  203 (216)
                      +.+|...|.++|   .|...+| ..|.+....+. ........+.+  ..-...+..||++||.|..
T Consensus         3 ~~~~~~~C~~Cg---~C~~~CP~~a~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~   66 (80)
T 1jb0_C            3 TVKIYDTCIGCT---QCVRACPTDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFLSIRV   66 (80)
T ss_dssp             EEEEETTCCCCC---HHHHHCTTCCCEEEECSSSTTSEEEECTTGGGCCCCCHHHHHCCSSSCSEEE
T ss_pred             CcccCCcCcChh---HHHHHCCcccccccccccccccccccCCCCCcCcCcCChhhhCCCCccEeee
Confidence            356778899977   8999888 67776543331 11110001111  1123678899999999864

>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}

Probab=90.75  E-value=0.14  Score=34.56  Aligned_cols=60  Identities=18%  Similarity=0.235  Sum_probs=34.8

Q ss_pred             hhcccccccCCCCCCCCCCCCC-ceeeeCCCCceeeecC---CCChhHHHHHHHhcCCC-CCeEecCCcc
Q 027943          142 FVNEVLCVGKGCPYSCVKTAPN-AFSYSSSTGTARAISQ---GHGQDYRVQLAVGQCPR-SCIHYVTPSQ  206 (216)
Q Consensus       142 fvde~~c~g~Gcp~~C~~~~p~-~F~~~~~~G~ar~~~~---~~~~~~~v~~Av~~CP~-~ai~~v~~~~  206 (216)
                      +++...|.++|   .|+..+|. .+.+.+.  .......   .-+.....-.-++.||+ +||.+.....
T Consensus         2 ~~~~~~C~~C~---~C~~~CP~~ai~~~~~--~~~~~~~~C~~C~~~~~~~~C~~~CP~~~Ai~~~~~~~   66 (85)
T 2zvs_A            2 LLITKKCINCD---MCEPECPNEAISMGDH--IYEINSDKCTECVGHYETPTCQKVCPIPNTIVKDPAHV   66 (85)
T ss_dssp             EEECTTCCCCC---TTTTTCTTCCEECCSS--SCEECGGGCCTTTTTCSSCHHHHHCSSCCEEECTTSCC
T ss_pred             EEeCCcCcChh---HHHHHCchhccCcCCC--ceEEeChhccCCCCcCCccHhhHhCcCCCCEEecCCCC
Confidence            46778999977   89999994 5555322  1111111   00100000156789999 9999976533

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=89.92  E-value=0.15  Score=47.47  Aligned_cols=45  Identities=16%  Similarity=0.153  Sum_probs=35.1

Q ss_pred             cchhhhhCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHH
Q 027943           61 SSAYAILGVEPSCSA--AELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEI  113 (216)
Q Consensus        61 ~~~y~iLgv~~~as~--~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~  113 (216)
                      .+||.|||++.+...  .+|+++||+|++..+++        .+++..|..|+.|
T Consensus       629 ~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~--------~~r~~lvd~a~~v  675 (681)
T 2pzi_A          629 ASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ--------RHRYTLVDMANKV  675 (681)
T ss_dssp             CSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH--------HHHHHHHHHHHHH
T ss_pred             CCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh--------HHHHHHHHHhccc
Confidence            349999999766654  67999999999965433        5688888888876

>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A

Probab=89.34  E-value=0.74  Score=30.07  Aligned_cols=68  Identities=16%  Similarity=0.141  Sum_probs=40.2

Q ss_pred             hhcccccccCCCCCCCCCCCCC-ceeeeCCCCceeeecCCCChhHHHHHHHhcCCCCCeEecCCcchhhHHHHhh
Q 027943          142 FVNEVLCVGKGCPYSCVKTAPN-AFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRIILEELLE  215 (216)
Q Consensus       142 fvde~~c~g~Gcp~~C~~~~p~-~F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~~~~~~~l~~~~~  215 (216)
                      ++|...|.+++|. .|....|. .+.+.+  +........-..   -..-++.||++||.+.....-.+++.+++
T Consensus         2 ~i~~~~C~~c~C~-~C~~~Cp~~ai~~~~--~~~~~~~~~C~~---Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~   70 (77)
T 1bc6_A            2 YVITEPCIGTKDA-SCVEVCPVDCIHEGE--DQYYIDPDVCID---CGACEAVCPVSAIYHEDFVPEEWKSYIQK   70 (77)
T ss_dssp             EECCSTTTTCCCC-SSTTTCTTCCEEECS--SSEEECTTTCCS---CCSHHHHSGGGSSEETTTSCHHHHHHHHH
T ss_pred             EEeCccCCCCCcc-hhHHhcccccEEeCC--CcEEECcccCcC---ccCCHhhcCccceEecCCCHHHHHHHHHH
Confidence            4678889983232 89999985 455532  222221111110   11356789999999987666666666543

>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A

Probab=86.45  E-value=0.45  Score=31.68  Aligned_cols=58  Identities=21%  Similarity=0.256  Sum_probs=35.3

Q ss_pred             hhcccccccCCCCCCCCCCCCC-ceeeeCCCCceeeecC---CCChhHHHHHHHhcCCCCCeEecCC
Q 027943          142 FVNEVLCVGKGCPYSCVKTAPN-AFSYSSSTGTARAISQ---GHGQDYRVQLAVGQCPRSCIHYVTP  204 (216)
Q Consensus       142 fvde~~c~g~Gcp~~C~~~~p~-~F~~~~~~G~ar~~~~---~~~~~~~v~~Av~~CP~~ai~~v~~  204 (216)
                      ++|...|.++|   .|+..+|. .+.+.+  +...+...   .-+.......-++.||++||.|...
T Consensus         2 ~~~~~~C~~C~---~C~~~CP~~ai~~~~--~~~~i~~~~C~~C~~~~~~~~C~~~CP~~Ai~~~~~   63 (82)
T 3eun_A            2 LMITDECINCD---VCEPECPNGAISQGD--ETYVIEPSLCTECVGHYETSQCVEVCPVDAIIKDPS   63 (82)
T ss_dssp             EEECTTCCCCC---TTGGGCTTCCEEECS--SSEEECGGGCCTTTTTCSSCHHHHHCTTCCEEECGG
T ss_pred             eEeCCCCcCcc---chHHHCChhheEcCC--CceEEchhhcCCCCCCCCccHHHHhCCccceEEcCC
Confidence            46788999977   89999996 555532  22222111   1110000115788999999999865

>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2

Probab=86.21  E-value=0.27  Score=32.40  Aligned_cols=64  Identities=17%  Similarity=0.169  Sum_probs=38.0

Q ss_pred             hhccccccc--CCCCCCCCCCCCC-ceeeeCCCCceeeecCCCChhHHHHHHHhcCCCCCeEecCCcchhhHHHH
Q 027943          142 FVNEVLCVG--KGCPYSCVKTAPN-AFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRIILEEL  213 (216)
Q Consensus       142 fvde~~c~g--~Gcp~~C~~~~p~-~F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~~~~~~~l~~~  213 (216)
                      ++|...|.+  +|   .|+...|. .+.+.+  +........-.   .-..-+..||++||.+.....-.+++.+
T Consensus         2 ~i~~~~C~~c~C~---~C~~~CP~~ai~~~~--~~~~~~~~~C~---~C~~C~~~CP~~Ai~~~~~~~~~~~~~~   68 (78)
T 1h98_A            2 HVICEPCIGVKDQ---SCVEVCPVECIYDGG--DQFYIHPEECI---DCGACVPACPVNAIYPEEDVPEQWKSYI   68 (78)
T ss_dssp             EEECGGGTTTCCC---HHHHHCTTCCEEECS--SSEEECTTTCC---CCCTHHHHCTTCCEEEGGGCCGGGTHHH
T ss_pred             EEEchhCCCCCcC---hhhhhcCccceEcCC--CEEEECcccCC---cHhHHHHhCCccceEecccChHHHHHHH
Confidence            467888998  55   78888885 566643  22222111111   0124677899999998765444444443

>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*

Probab=80.05  E-value=0.87  Score=34.35  Aligned_cols=67  Identities=19%  Similarity=0.211  Sum_probs=38.6

Q ss_pred             hhhcccccccCC--CCCCCCCCCCC-ceeeeCCCCceeeecCCCChhHHHHHHHhcCCCCCeEecCCcchhh
Q 027943          141 VFVNEVLCVGKG--CPYSCVKTAPN-AFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVTPSQRII  209 (216)
Q Consensus       141 ~fvde~~c~g~G--cp~~C~~~~p~-~F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~~~~~~~  209 (216)
                      +++|+..|.++|  |-..|+..+|. .+.++...+.+......  .-..-..-+..||++||.+....+...
T Consensus         3 ~~vd~~~C~~C~~~~~~~C~~~CP~~ai~~~~~~~~~~~id~~--~C~~Cg~Cv~~CP~~AI~~~~~~~~~~   72 (150)
T 1jnr_B            3 SFVNPEKCDGCKALERTACEYICPNDLMTLDKEKMKAYNREPD--MCWECYSCVKMCPQGAIDVRGYVDYSP   72 (150)
T ss_dssp             EEECTTTCCSCCSSSSCHHHHHCTTSCEEEETTTTEEEESCGG--GCCCCCHHHHHCTTCCEEECCCTTTCC
T ss_pred             eEECcccCCCCCCcccccchhhcCccCeEEecCCceeeeeCcc--cCcCHhHHHHhCCccceEecCcchhhh
Confidence            467889999854  11147777774 56665443332222211  000112577899999999887655443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	216
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	7e-10
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	4e-09
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	5e-09
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	9e-08
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	9e-08
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	2e-07
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	1e-06
d1fxra_	64	d.58.1.4 (A:) Ferredoxin I {Sulfate-reducing bacte	6e-05
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	5e-04

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.3 bits (125), Expect = 7e-10
 Identities = 8/57 (14%), Positives = 18/57 (31%), Gaps = 3/57 (5%)

Query: 62  SAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDAL---IRRIIQAYEILT 115
           + +  +G+    +  ++K  +R  V   HPD                 +  A+    
Sbjct: 34  TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFE 90

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.1 bits (119), Expect = 4e-09
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 6/58 (10%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDAL------IRRIIQAYEILT 115
           Y+ILG +PS + ++LK  ++  +  YHPD       +  +         I QA++IL 
Sbjct: 19  YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 49.2 bits (117), Expect = 5e-09
 Identities = 19/52 (36%), Positives = 33/52 (63%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT 115
           Y ILGV  +    E++ A++    +YHPD N+  ++++A  + I +AYE+LT
Sbjct: 6   YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLT 57

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (109), Expect = 9e-08
 Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 63  AYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDG-RDSDALIRRIIQAYEIL 114
             +++        +E K   R    ++HPD N +    ++ + + +      L
Sbjct: 18  VTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL 70

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 45.8 bits (108), Expect = 9e-08
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 7/59 (11%)

Query: 64  YAILGVEPSCSA--AELKAAFRAKVKQYHPDVNRDGRDSD-----ALIRRIIQAYEILT 115
           + + G+          L   F+   +QYHPD    G  ++          I QA++ L 
Sbjct: 4   FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLR 62

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 45.4 bits (107), Expect = 2e-07
 Identities = 5/57 (8%), Positives = 16/57 (28%), Gaps = 6/57 (10%)

Query: 62  SAYAILGVEPSC--SAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
               +L +          ++ A++ +    HPD           ++ +   +     
Sbjct: 12  RLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHAL----MQELNSLWGTFKT 64

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (99), Expect = 1e-06
 Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 64  YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
           Y  LG+    S  E+K A+R +  +YHPD N++    +   + I +AY++L++  + EI 
Sbjct: 6   YQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEK-FKEIAEAYDVLSDPRKREIF 64

Query: 124 ER 125
           +R
Sbjct: 65  DR 66

>d1fxra_ d.58.1.4 (A:) Ferredoxin I {Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]} Length = 64

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin I
species: Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]

 Score = 37.8 bits (87), Expect = 6e-05
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 138 ALDVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRS 197
           A   +V++  C+       CV+ AP AF+       A            V+ A+  CP  
Sbjct: 1   ARKFYVDQDECIACES---CVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQ 57

Query: 198 CIHYV 202
           CIH+ 
Sbjct: 58  CIHWE 62

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 36.3 bits (83), Expect = 5e-04
 Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 63  AYAILGVEPSC--SAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEIL 114
              +LG+E S   +   ++ A+  K K++HPD   D       ++++   Y+ +
Sbjct: 10  LMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEK----MKKMNTLYKKM 59

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	216
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.91
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.86
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.81
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.77
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.75
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.67
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.66
d1fxra_	64	Ferredoxin I {Sulfate-reducing bacteria (Desulfovi	99.18
d1iqza_	81	Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1	98.59
d1fxda_	58	Ferredoxin I {Desulfovibrio gigas [TaxId: 879]}	98.44
d1sj1a_	66	Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxI	98.35
d1vjwa_	59	Ferredoxin A {Thermotoga maritima [TaxId: 2336]}	98.04
d2fug34	151	NADH-quinone oxidoreductase chain 3, Nqo3, domain	88.45
d3c8ya3	83	Fe-only hydrogenase, second domain {Clostridium pa	83.45

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=5.1e-25  Score=151.25  Aligned_cols=73  Identities=27%  Similarity=0.545  Sum_probs=68.4

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCCC
Q 027943           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFD  132 (216)
Q Consensus        60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~  132 (216)
                      .+|||+||||+++||.++||+|||+|++++|||+++.+..+.+.|++|++||+||+||.+|..||.+|..+|.
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~e   74 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFE   74 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTTSSCC
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHhCccccC
Confidence            4689999999999999999999999999999999988777889999999999999999999999999977664

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=6.1e-23  Score=141.45  Aligned_cols=71  Identities=28%  Similarity=0.549  Sum_probs=65.0

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (216)
Q Consensus        60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~  131 (216)
                      .+|||+||||+++++.++||+||+++++++|||++.. ..+.+.|+.|++||+||+||.+|+.||++|..++
T Consensus         2 ~kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~-~~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~~~~   72 (77)
T d1hdja_           2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-PGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGL   72 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC-TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGC
T ss_pred             CCChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccc-hhHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhh
Confidence            3589999999999999999999999999999999876 4578899999999999999999999999885554

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=3.9e-22  Score=142.37  Aligned_cols=73  Identities=25%  Similarity=0.367  Sum_probs=65.1

Q ss_pred             CccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC------cHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCC
Q 027943           59 STSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGR------DSDALIRRIIQAYEILTEYSRLEIIERECIDPF  131 (216)
Q Consensus        59 ~~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~------~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~  131 (216)
                      ...|||+||||+++++.++||++|++|+++||||++....      .+.+.|+.|++||+||+||.+|+.||.....+.
T Consensus        14 ~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~~   92 (94)
T d1wjza_          14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSGPS   92 (94)
T ss_dssp             SCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCCSC
T ss_pred             hccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHccCCCC
Confidence            3578999999999999999999999999999999987642      367789999999999999999999999875543

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.81  E-value=1.1e-21  Score=144.78  Aligned_cols=66  Identities=18%  Similarity=0.290  Sum_probs=59.5

Q ss_pred             ccchhhhhCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCC
Q 027943           60 TSSAYAILGVEPSC--SAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECID  129 (216)
Q Consensus        60 ~~~~y~iLgv~~~a--s~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~  129 (216)
                      ..++|+||||+++|  +.++||+|||+|++++||||+++    .++|++|++||+||+|+.+|+.||..+..
T Consensus         7 ~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~----~e~F~~I~~AY~vLsd~~kR~~YD~~~~~   74 (114)
T d1gh6a_           7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGGF   74 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHHHHHSCCSSCCSCC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhh----HHHHHHHHHHHHHhCCHHHHHHHhccCCC
Confidence            46899999999998  78899999999999999999765    35799999999999999999999987643

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.77  E-value=7.9e-20  Score=125.89  Aligned_cols=65  Identities=11%  Similarity=0.152  Sum_probs=59.0

Q ss_pred             ccchhhhhCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCC
Q 027943           60 TSSAYAILGVEPSC--SAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEIIERECI  128 (216)
Q Consensus        60 ~~~~y~iLgv~~~a--s~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~  128 (216)
                      ..++|+||||++++  +.++||+|||+++++||||++++    .++|++|++||++|+|+.+|..||..+.
T Consensus        10 ~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~----~e~~~~in~Ay~~L~d~~~r~~~~~~~~   76 (79)
T d1fafa_          10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYNLRMNLGGT   76 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHHHHHHHTTCCSSC
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCC----HHHHHHHHHHHHHHCCHHHHHHHccCCC
Confidence            46899999999987  99999999999999999999643    6789999999999999999999998763

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=6.5e-19  Score=120.64  Aligned_cols=66  Identities=20%  Similarity=0.243  Sum_probs=58.0

Q ss_pred             chhhhhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCc-----HHHHHHHHHHHHHHhcCchhHHHHHhhC
Q 027943           62 SAYAILGVEPS--CSAAELKAAFRAKVKQYHPDVNRDGRD-----SDALIRRIIQAYEILTEYSRLEIIEREC  127 (216)
Q Consensus        62 ~~y~iLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~~-----~~~~f~~i~~Ay~~L~d~~~R~~yd~~g  127 (216)
                      |||+||||+++  ++.++||++||++++++|||+....+.     +.+.|+.|++||+||+||.+|..|+...
T Consensus         2 nyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll~l   74 (76)
T d1fpoa1           2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL   74 (76)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred             ChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence            79999999985  558999999999999999999765442     5678899999999999999999998753

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.67  E-value=4.3e-18  Score=121.94  Aligned_cols=63  Identities=13%  Similarity=0.255  Sum_probs=57.2

Q ss_pred             cchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCc---HHHHHHHHHHHHHHhcCchhHHHH
Q 027943           61 SSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRD---SDALIRRIIQAYEILTEYSRLEII  123 (216)
Q Consensus        61 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~---~~~~f~~i~~Ay~~L~d~~~R~~y  123 (216)
                      .++|++|||+..++.++||+|||++++++|||++++...   +.+.|+.|++||++|+|+.+|+.|
T Consensus        33 ~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             CCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             ccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            457999999999999999999999999999999876542   678999999999999999999876

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=8e-18  Score=118.06  Aligned_cols=65  Identities=12%  Similarity=0.237  Sum_probs=56.3

Q ss_pred             ccchhhhhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC-cHHHHHHHHHHHHHHhcCchhHHHHHhhC
Q 027943           60 TSSAYAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGR-DSDALIRRIIQAYEILTEYSRLEIIEREC  127 (216)
Q Consensus        60 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~-~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g  127 (216)
                      .+++|+||||+.++|.++||+|||+|+++||||+++++. .+.+.|+.|++||++|++   +..||+..
T Consensus        15 ~~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~~---~~~~d~~~   80 (88)
T d1iura_          15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK---QAFLDQNA   80 (88)
T ss_dssp             HHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHH---HTTCSSSS
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHH---HHHhhccc
Confidence            478999999999999999999999999999999988754 478899999999999974   45555443

>d1fxra_ d.58.1.4 (A:) Ferredoxin I {Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin I
species: Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]

Probab=99.18  E-value=4e-12  Score=83.27  Aligned_cols=61  Identities=28%  Similarity=0.542  Sum_probs=56.5

Q ss_pred             hhhhcccccccCCCCCCCCCCCCCceeeeCCCCceeeecCCCChhHHHHHHHhcCCCCCeEecC
Q 027943          140 DVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHYVT  203 (216)
Q Consensus       140 ~~fvde~~c~g~Gcp~~C~~~~p~~F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~v~  203 (216)
                      .+|||+..|+|+|   .|+..+|..|.+.++.|.+++..++.+......++++.||++||+|++
T Consensus         3 ~~~VD~~~CigCg---~C~~~cP~~f~~~~~~~~~~~~~~~~~~c~~c~~c~~~CP~~aI~~~e   63 (64)
T d1fxra_           3 KFYVDQDECIACE---SCVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCIHWED   63 (64)
T ss_dssp             EEEECTTTCCCCC---HHHHHCTTTEEEETTTTEEEESCTTSSCHHHHHHHHHHCTTCCEEEEC
T ss_pred             eEEEchhhCccCC---CccccCcCeEEEecCCCeeeeeccCCCcchhHHHHHhcCCcccEEEEe
Confidence            5789999999988   999999999999988899899888888888999999999999999986

>d1iqza_ d.58.1.4 (A:) Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1427]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin
species: Bacillus thermoproteolyticus [TaxId: 1427]

Probab=98.59  E-value=5.5e-09  Score=71.07  Aligned_cols=66  Identities=20%  Similarity=0.313  Sum_probs=50.9

Q ss_pred             hhhcccccccCCCCCCCCCCCCCceeeeCCCCceeeecCC--------CChhHHHHHHHhcCCCCCeEecCCc-chhhH
Q 027943          141 VFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQG--------HGQDYRVQLAVGQCPRSCIHYVTPS-QRIIL  210 (216)
Q Consensus       141 ~fvde~~c~g~Gcp~~C~~~~p~~F~~~~~~G~ar~~~~~--------~~~~~~v~~Av~~CP~~ai~~v~~~-~~~~l  210 (216)
                      ++||+..|+|+|   .|+..+|.+|.+++ .|.+.+...+        .+....+++|++.||++||++++.. +...+
T Consensus         4 v~VD~~~CigCg---~C~~~cP~~f~~~~-dg~~~~~~~~~~~~~~v~~~~~~~~~~aa~~CP~~AI~v~d~p~~~~p~   78 (81)
T d1iqza_           4 TIVDKETCIACG---ACGAAAPDIYDYDE-DGIAYVTLDDNQGIVEVPDILIDDMMDAFEGCPTDSIKVADEPFDGDPN   78 (81)
T ss_dssp             EEECTTTCCCCS---HHHHHCTTTEEECT-TSCEEETTTTTSSCSCCCGGGHHHHHHHHHHCTTCCEEEESSCCTTCTT
T ss_pred             EEEeHHHCcCcC---hHhHhCchheeEcC-CCeEEEeecCCcCcccCCHHHHHHHHHHHHhCCcccEEEEeCCCCCccc
Confidence            579999999988   99999999999965 4665554332        2334578899999999999999855 44333

>d1fxda_ d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [TaxId: 879]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin I
species: Desulfovibrio gigas [TaxId: 879]

Probab=98.44  E-value=3.8e-08  Score=62.52  Aligned_cols=56  Identities=21%  Similarity=0.379  Sum_probs=44.4

Q ss_pred             hhhcccccccCCCCCCCCCCCCCceeeeCCCCceeeecCCCChhHHHHHHHhcCCCCCeEe
Q 027943          141 VFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHY  201 (216)
Q Consensus       141 ~fvde~~c~g~Gcp~~C~~~~p~~F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~  201 (216)
                      +|+| ..|+|+|   .|+..+|..|.+.++. .+++.....+....+.++++.|||+||.+
T Consensus         2 v~v~-e~CigCg---~C~~~CP~~~~~~~~g-~~~~~~~~~~~~~~c~~c~~~CP~~AIs~   57 (58)
T d1fxda_           2 IEVN-DDCMACE---ACVEICPDVFEMNEEG-DKAVVINPDSDLDCVEEAIDSCPAEAIVR   57 (58)
T ss_dssp             EEEC-TTCCCCC---HHHHHCTTTEEECSSS-SSEEESCTTCCCHHHHHHHHHCTTCCEEE
T ss_pred             eeEC-ccCcChh---hHHHHcChhheEcCCC-CEEEEecCCCCcHHHHHHhhcCChhcEEC
Confidence            3566 5799988   9999999999997664 44555555556677899999999999986

>d1sj1a_ d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Fe3S4-ferredoxin PF1909
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.35  E-value=3.9e-08  Score=63.91  Aligned_cols=61  Identities=23%  Similarity=0.409  Sum_probs=46.4

Q ss_pred             hhhhhcccccccCCCCCCCCCCCCCceeeeCCCCceeeecCC-CC--hhHHHHHHHhcCCCCCeEecC
Q 027943          139 LDVFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQG-HG--QDYRVQLAVGQCPRSCIHYVT  203 (216)
Q Consensus       139 ~~~fvde~~c~g~Gcp~~C~~~~p~~F~~~~~~G~ar~~~~~-~~--~~~~v~~Av~~CP~~ai~~v~  203 (216)
                      +.+.+|...|+|+|   .|+..+|.+|.++++ |.+...... .+  .......+++.||++||++.+
T Consensus         2 ~ki~vD~~~Ci~Cg---~C~~~CP~~~~~~~~-~~~~~~~~~~~~~~~c~~c~~c~~~CP~~AI~i~e   65 (66)
T d1sj1a_           2 WKVSVDQDTCIGDA---ICASLCPDVFEMNDE-GKAQPKVEVIEDEELYNCAKEAMEACPVSAITIEE   65 (66)
T ss_dssp             EEEEECTTTCCCCC---HHHHHCTTTEEECTT-SCEEESCSCBCCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred             eEEEEeHHHCCCcC---hhhhhCCceEEEccc-CceEeeccccCChHHHhhhCHhhccCCcccEEEEe
Confidence            45678999999988   999999999999765 444444332 22  234578899999999999865

>d1vjwa_ d.58.1.4 (A:) Ferredoxin A {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin A
species: Thermotoga maritima [TaxId: 2336]

Probab=98.04  E-value=6.3e-07  Score=56.76  Aligned_cols=56  Identities=25%  Similarity=0.484  Sum_probs=45.4

Q ss_pred             hhhcccccccCCCCCCCCCCCCCceeeeCCCCceeeecCCCChhHHHHHHHhcCCCCCeEe
Q 027943          141 VFVNEVLCVGKGCPYSCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHY  201 (216)
Q Consensus       141 ~fvde~~c~g~Gcp~~C~~~~p~~F~~~~~~G~ar~~~~~~~~~~~v~~Av~~CP~~ai~~  201 (216)
                      +.+|...|.|+|   .|...+|..|.++++ |.+.+..+. +.......+++.||++||+|
T Consensus         3 v~iD~~~C~~Cg---~C~~~cP~~~~~~~~-g~~~~~~~~-~~c~~c~~c~~~CP~~AI~i   58 (59)
T d1vjwa_           3 VRVDADACIGCG---VCENLCPDVFQLGDD-GKAKVLQPE-TDLPCAKDAADSCPTGAISV   58 (59)
T ss_dssp             CEECTTTCCCCC---HHHHHCTTTEEECTT-SSEEESCSB-CCCTHHHHHHHHCTTCCEEC
T ss_pred             EEEeHHHCCCCC---CChHhCchheEEccc-eeeEEecCh-HHCcCcCcccCccCcccEEe
Confidence            568999999988   999999999998654 666665543 33456889999999999987

>d2fug34 d.58.1.5 (3:96-246) NADH-quinone oxidoreductase chain 3, Nqo3, domain 2 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: NADH-quinone oxidoreductase chain 3, Nqo3, domain 2
species: Thermus thermophilus [TaxId: 274]

Probab=88.45  E-value=0.16  Score=36.97  Aligned_cols=120  Identities=13%  Similarity=0.128  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHhCCCCCC---CCCcHHHHHHHHHHHHHHhcCchhHHHHHhhCCCCCC-------Ccchhhhhhhhcc
Q 027943           76 AELKAAFRAKVKQYHPDVNR---DGRDSDALIRRIIQAYEILTEYSRLEIIERECIDPFD-------YPECEALDVFVNE  145 (216)
Q Consensus        76 ~~Ik~ayr~l~~~~HPDk~~---~~~~~~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~-------~~~~~~~~~fvde  145 (216)
                      .+.++.--.|.+..||---+   .++.  =.++.+...|.+-.........+......+.       ........+..|.
T Consensus         6 ~~~Rk~ilelll~~Hp~dC~~C~~~g~--C~LQ~~a~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~d~   83 (151)
T d2fug34           6 REAQAGMVEFTLLNHPLDCPTCDKGGA--CELQDRTVEYGLYEKYYQKGPLELPVYTRFEFTRRHVDKHHPLSPFVILDR   83 (151)
T ss_dssp             HHHHHHHHHHHHHTCCCCTTTCTTGGG--CHHHHHHHHTCCCCC--------CCCSCCCCBCCCCCCCCEESSSSSCEEC
T ss_pred             HHHHHHHHHHHHcCCCCcCCcccccCc--hHHHHHHHHhCCCccccccccccccccccccccccccCcccCCCCeEEecC
Confidence            45677777888889996532   1111  1244444444332221111111111111111       1110123467899


Q ss_pred             cccccCCCCCCCCCCC-----CCceeeeCCCCceeeecCCCCh-hHHHHHHHhcCCCCCeE
Q 027943          146 VLCVGKGCPYSCVKTA-----PNAFSYSSSTGTARAISQGHGQ-DYRVQLAVGQCPRSCIH  200 (216)
Q Consensus       146 ~~c~g~Gcp~~C~~~~-----p~~F~~~~~~G~ar~~~~~~~~-~~~v~~Av~~CP~~ai~  200 (216)
                      ..|+.+|   +|+..+     -..+++...+....+.....+. -...-+-|+-|||+||.
T Consensus        84 ~kCI~C~---rCvr~C~ev~g~~~l~~~~rG~~~~i~~~~~~~~c~~cG~Cv~vCPtGAL~  141 (151)
T d2fug34          84 ERCIHCK---RCVRYFEEVPGDEVLDFIERGVHTFIGTMDFGLPSGFSGNITDICPVGALL  141 (151)
T ss_dssp             SCCCCCC---HHHHHHHHTTCCCCCCCBSCGGGCBCCCSSTTCCSSCCTHHHHHCSSSSSB
T ss_pred             CCCCcCc---hHHhhhhhccCCceEEEeccccceEEccCCCCCCChhhcCHHhcCcccccc
Confidence            9999988   886533     4555665443333332211111 11122578889999985

>d3c8ya3 d.58.1.5 (A:127-209) Fe-only hydrogenase, second domain {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Fe-only hydrogenase, second domain
species: Clostridium pasteurianum [TaxId: 1501]

Probab=83.45  E-value=0.034  Score=36.15  Aligned_cols=60  Identities=13%  Similarity=0.289  Sum_probs=32.8

Q ss_pred             hhhhhcccccccCCCCCCCCCCCCCc-----eeeeCCCCceeeecCC-C--ChhHH--HHHHHhcCCCCCeEe
Q 027943          139 LDVFVNEVLCVGKGCPYSCVKTAPNA-----FSYSSSTGTARAISQG-H--GQDYR--VQLAVGQCPRSCIHY  201 (216)
Q Consensus       139 ~~~fvde~~c~g~Gcp~~C~~~~p~~-----F~~~~~~G~ar~~~~~-~--~~~~~--v~~Av~~CP~~ai~~  201 (216)
                      ..+.+|+..|+++|   .|+...|..     +.+....+........ .  +...-  --.-++-|||+||.-
T Consensus        12 ~~i~iD~~kCI~C~---~Cv~aCp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~Cv~vCP~gAi~~   81 (83)
T d3c8ya3          12 KSLTVDRTKCLLCG---RCVNACGKNTETYAMKFLNKNGKTIIGAEDEKCFDDTNCLLCGQCIIACPVAALSE   81 (83)
T ss_dssp             SSEEEEGGGCCCCC---HHHHHHHHHHSCCCSEEEEETTEEEEESGGGCCGGGSSCCCCCHHHHHCSSTTEEE
T ss_pred             CCEEEchhHCCCCc---hHHHhhcccccccceeeeccccceEEcccccccccccccccCCHHHhhCCCCcccc
Confidence            45678999999988   888766632     1222122222221110 0  11001  225788999999974