Citrus Sinensis ID: 027947

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210------
MVSGSNGTTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRKMLLKKFV
cccccccccHHHHHHHHHccccEEEEccHHHHHHHcccccccccccHHHcccccHHHHHHHHHHHHccccEEEEccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHcccccccccc
cccccccHHHHHHHHHHHcccEEEEccHHHHHHHHcccccccHHHHHHHHHHcHHHHHHHHHHHHHccccEEEEccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHccccccccEEEEEccccccEEcccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHccccEEEEccc
mvsgsngttsFMTDFLqkcggysvvdggFATELerhgadlndplwsakclvssphlvrkVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRcmkdswdftgsgrissrpVLVAASVGsygayladgseysgdygdavsLETLKEFHRRRVLILANSgadliafetipnkleAKVFSKYVIINQRKMLLKKFV
mvsgsngttSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRKMLLKKFV
MVSGSNGTTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRKMLLKKFV
**********FMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRKMLL****
***************LQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWD******ISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRKMLLKKFV
********TSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRKMLLKKFV
****SNGTTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDF*****ISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRKMLLKKFV
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVSGSNGTTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRKMLLKKFV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query216 2.2.26 [Sep-21-2011]
Q8LAX0 347 Homocysteine S-methyltran yes no 0.893 0.556 0.797 2e-88
Q9M1W4 333 Homocysteine S-methyltran no no 0.865 0.561 0.714 5e-76
P56707 338 Selenocysteine methyltran N/A no 0.893 0.571 0.680 8e-75
Q4VNK0 346 Selenocysteine Se-methylt N/A no 0.912 0.569 0.674 4e-74
Q9FUM9 339 Homocysteine S-methyltran N/A no 0.888 0.566 0.633 4e-67
Q9FUM8 338 Homocysteine S-methyltran N/A no 0.824 0.526 0.659 4e-66
Q9FUM7 342 Homocysteine S-methyltran N/A no 0.851 0.538 0.613 5e-64
Q9SDL7 326 Homocysteine S-methyltran no no 0.842 0.558 0.582 1e-60
A4ZGQ8 326 Homocysteine S-methyltran N/A no 0.865 0.573 0.561 4e-60
Q9FUN0 323 Homocysteine S-methyltran N/A no 0.888 0.594 0.511 2e-57
>sp|Q8LAX0|HMT3_ARATH Homocysteine S-methyltransferase 3 OS=Arabidopsis thaliana GN=HMT3 PE=1 SV=2 Back     alignment and function desciption
 Score =  324 bits (831), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 154/193 (79%), Positives = 173/193 (89%)

Query: 8   TTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDA 67
           T+S MTDFL+KCGGY+VVDGGFATEL+RHGAD+NDPLWSAKCL++SPHLV KVHLDYL++
Sbjct: 9   TSSLMTDFLEKCGGYAVVDGGFATELQRHGADINDPLWSAKCLITSPHLVTKVHLDYLES 68

Query: 68  GANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSG 127
           GANIIITASYQATIQGF AKG S  EAE LLRRSVEI  EAREI+Y+RC K SWDF  +G
Sbjct: 69  GANIIITASYQATIQGFVAKGLSVGEAENLLRRSVEITYEAREIFYNRCTKGSWDFAYAG 128

Query: 128 RISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAF 187
           + S RP+LVAASVGSYGAYLADGSEYSG YGD+VS ETLK+FHRRRV ILA SGADLIAF
Sbjct: 129 KASRRPILVAASVGSYGAYLADGSEYSGIYGDSVSKETLKDFHRRRVQILAKSGADLIAF 188

Query: 188 ETIPNKLEAKVFS 200
           ETIPNKLEA+ ++
Sbjct: 189 ETIPNKLEAEAYA 201
Catalyzes methyl transfer from S-methylmethionine (SMM) to adenosyl-L-homocysteine (AdoMet). SMM degradation (by HMT-1, HMT-2 and HMT-3) and biosynthesis (by MMT1) constitute the SMM cycle in plants, which is probably required to achieve short term control of AdoMet level.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 0
>sp|Q9M1W4|HMT2_ARATH Homocysteine S-methyltransferase 2 OS=Arabidopsis thaliana GN=HMT-2 PE=1 SV=1 Back     alignment and function description
>sp|P56707|SMTA_ASTBI Selenocysteine methyltransferase OS=Astragalus bisulcatus GN=SMTA PE=1 SV=1 Back     alignment and function description
>sp|Q4VNK0|SMTA_BRAOT Selenocysteine Se-methyltransferase OS=Brassica oleracea var. italica GN=SMT PE=1 SV=1 Back     alignment and function description
>sp|Q9FUM9|HMT2_MAIZE Homocysteine S-methyltransferase 2 OS=Zea mays GN=HMT-2 PE=2 SV=1 Back     alignment and function description
>sp|Q9FUM8|HMT3_MAIZE Homocysteine S-methyltransferase 3 OS=Zea mays GN=HMT-3 PE=2 SV=1 Back     alignment and function description
>sp|Q9FUM7|HMT4_MAIZE Homocysteine S-methyltransferase 4 OS=Zea mays GN=HMT-4 PE=2 SV=1 Back     alignment and function description
>sp|Q9SDL7|HMT1_ARATH Homocysteine S-methyltransferase 1 OS=Arabidopsis thaliana GN=HMT-1 PE=1 SV=1 Back     alignment and function description
>sp|A4ZGQ8|HMT1_BRAOT Homocysteine S-methyltransferase 1 OS=Brassica oleracea var. italica GN=HMT1 PE=1 SV=1 Back     alignment and function description
>sp|Q9FUN0|HMT1_MAIZE Homocysteine S-methyltransferase 1 OS=Zea mays GN=HMT-1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query216
255552095 348 5-methyltetrahydrofolate:homocysteine me 0.907 0.563 0.826 6e-94
224107975 338 homocysteine s-methyltransferase [Populu 0.907 0.579 0.806 2e-90
297835280 347 homocysteine S-methyltransferase 3 [Arab 0.893 0.556 0.797 3e-87
18403505 347 homocysteine S-methyltransferase 3 [Arab 0.893 0.556 0.797 1e-86
449522026 338 PREDICTED: homocysteine S-methyltransfer 0.902 0.576 0.779 2e-86
449455288 338 PREDICTED: homocysteine S-methyltransfer 0.902 0.576 0.774 4e-86
255638530 341 unknown [Glycine max] 0.898 0.568 0.788 1e-85
363807204 341 uncharacterized protein LOC100811127 [Gl 0.898 0.568 0.788 1e-85
21593147 347 putative selenocysteine methyltransferas 0.893 0.556 0.787 7e-85
224085515 341 homocysteine s-methyltransferase [Populu 0.888 0.563 0.765 1e-84
>gi|255552095|ref|XP_002517092.1| 5-methyltetrahydrofolate:homocysteine methyltransferase, putative [Ricinus communis] gi|223543727|gb|EEF45255.1| 5-methyltetrahydrofolate:homocysteine methyltransferase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  348 bits (894), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 162/196 (82%), Positives = 180/196 (91%)

Query: 8   TTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDA 67
           T SFM+DFLQKCGGY+V+DGGFATELERHGADLNDPLWSAKCL+SSPHLVR+VHLDY+DA
Sbjct: 9   TRSFMSDFLQKCGGYAVIDGGFATELERHGADLNDPLWSAKCLISSPHLVRRVHLDYIDA 68

Query: 68  GANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSG 127
           GANII+TASYQATIQGFEAKG STEEAE LLRRSVEIACEAREIYYD C K SWD    G
Sbjct: 69  GANIILTASYQATIQGFEAKGLSTEEAEQLLRRSVEIACEAREIYYDNCTKGSWDLMEDG 128

Query: 128 RISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAF 187
           ++S  PVLVAAS+GSYGAYLADGSEYSGDYGDAVS++TLK+FHRRR+ ILA SGADLIAF
Sbjct: 129 KMSRHPVLVAASIGSYGAYLADGSEYSGDYGDAVSIQTLKDFHRRRLQILAKSGADLIAF 188

Query: 188 ETIPNKLEAKVFSKYV 203
           ETIPNKLEAK +++ +
Sbjct: 189 ETIPNKLEAKAYAELL 204

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224107975|ref|XP_002314674.1| homocysteine s-methyltransferase [Populus trichocarpa] gi|222863714|gb|EEF00845.1| homocysteine s-methyltransferase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297835280|ref|XP_002885522.1| homocysteine S-methyltransferase 3 [Arabidopsis lyrata subsp. lyrata] gi|297331362|gb|EFH61781.1| homocysteine S-methyltransferase 3 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18403505|ref|NP_566715.1| homocysteine S-methyltransferase 3 [Arabidopsis thaliana] gi|50400551|sp|Q8LAX0.2|HMT3_ARATH RecName: Full=Homocysteine S-methyltransferase 3; AltName: Full=S-methylmethionine:homocysteine methyltransferase 3; Short=AtHMT-3; Short=SMM:Hcy S-methyltransferase 3 gi|9966515|gb|AAG10301.1|AF297394_1 homocysteine S-methyltransferase [Arabidopsis thaliana] gi|9279692|dbj|BAB01249.1| cysteine methyltransferase [Arabidopsis thaliana] gi|26451099|dbj|BAC42654.1| putative selenocysteine methyltransferase [Arabidopsis thaliana] gi|28950917|gb|AAO63382.1| At3g22740 [Arabidopsis thaliana] gi|332643151|gb|AEE76672.1| homocysteine S-methyltransferase 3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449522026|ref|XP_004168029.1| PREDICTED: homocysteine S-methyltransferase 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449455288|ref|XP_004145385.1| PREDICTED: homocysteine S-methyltransferase 3-like [Cucumis sativus] gi|449472065|ref|XP_004153485.1| PREDICTED: homocysteine S-methyltransferase 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255638530|gb|ACU19573.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|363807204|ref|NP_001242352.1| uncharacterized protein LOC100811127 [Glycine max] gi|255644435|gb|ACU22722.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|21593147|gb|AAM65096.1| putative selenocysteine methyltransferase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224085515|ref|XP_002307602.1| homocysteine s-methyltransferase [Populus trichocarpa] gi|222857051|gb|EEE94598.1| homocysteine s-methyltransferase [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query216
TAIR|locus:2094419 347 HMT3 "homocysteine S-methyltra 0.893 0.556 0.797 1.4e-80
UNIPROTKB|Q4VNK0 346 SMT "Selenocysteine Se-methylt 0.912 0.569 0.684 2.3e-71
TAIR|locus:2077234 333 HMT2 "homocysteine methyltrans 0.861 0.558 0.715 1.1e-69
TAIR|locus:2092120 326 HMT-1 [Arabidopsis thaliana (t 0.842 0.558 0.582 4.2e-56
UNIPROTKB|A4ZGQ8 326 HMT1 "Homocysteine S-methyltra 0.865 0.573 0.561 5.3e-56
UNIPROTKB|Q47690 310 mmuM [Escherichia coli K-12 (t 0.759 0.529 0.5 2.7e-36
ZFIN|ZDB-GENE-030131-9545 311 zgc:172121 "zgc:172121" [Danio 0.754 0.524 0.423 3e-30
FB|FBgn0032727 331 CG10623 [Drosophila melanogast 0.791 0.516 0.371 1.3e-27
FB|FBgn0032726 331 CG10621 [Drosophila melanogast 0.777 0.507 0.361 3.2e-26
CGD|CAL0004923 311 SAM4 [Candida albicans (taxid: 0.587 0.408 0.357 1.3e-15
TAIR|locus:2094419 HMT3 "homocysteine S-methyltransferase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
 Identities = 154/193 (79%), Positives = 173/193 (89%)

Query:     8 TTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDA 67
             T+S MTDFL+KCGGY+VVDGGFATEL+RHGAD+NDPLWSAKCL++SPHLV KVHLDYL++
Sbjct:     9 TSSLMTDFLEKCGGYAVVDGGFATELQRHGADINDPLWSAKCLITSPHLVTKVHLDYLES 68

Query:    68 GANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSG 127
             GANIIITASYQATIQGF AKG S  EAE LLRRSVEI  EAREI+Y+RC K SWDF  +G
Sbjct:    69 GANIIITASYQATIQGFVAKGLSVGEAENLLRRSVEITYEAREIFYNRCTKGSWDFAYAG 128

Query:   128 RISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAF 187
             + S RP+LVAASVGSYGAYLADGSEYSG YGD+VS ETLK+FHRRRV ILA SGADLIAF
Sbjct:   129 KASRRPILVAASVGSYGAYLADGSEYSGIYGDSVSKETLKDFHRRRVQILAKSGADLIAF 188

Query:   188 ETIPNKLEAKVFS 200
             ETIPNKLEA+ ++
Sbjct:   189 ETIPNKLEAEAYA 201
GO:0005737 "cytoplasm" evidence=ISM
GO:0008898 "homocysteine S-methyltransferase activity" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=IDA
UNIPROTKB|Q4VNK0 SMT "Selenocysteine Se-methyltransferase" [Brassica oleracea var. italica (taxid:36774)] Back     alignment and assigned GO terms
TAIR|locus:2077234 HMT2 "homocysteine methyltransferase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2092120 HMT-1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|A4ZGQ8 HMT1 "Homocysteine S-methyltransferase 1" [Brassica oleracea var. italica (taxid:36774)] Back     alignment and assigned GO terms
UNIPROTKB|Q47690 mmuM [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-9545 zgc:172121 "zgc:172121" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0032727 CG10623 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0032726 CG10621 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
CGD|CAL0004923 SAM4 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8LAX0HMT3_ARATH2, ., 1, ., 1, ., 1, 00.79790.89350.5561yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.10.921
4th Layer2.1.1.100.914

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
HMT2
homocysteine s-methyltransferase (EC-2.1.1.10) (338 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.00880022
RecName- Full=Adenosylhomocysteinase; EC=3.3.1.1; (485 aa)
     •• 0.928
estExt_Genewise1_v1.C_LG_I3343
adenosylhomocysteinase/s-adenosyl-l-homocysteine hydrolase (EC-3.3.1.1) (485 aa)
     •• 0.928
AdoMet5
s-adenosylmethionine synthetase 5 (EC-2.5.1.6); Catalyzes the formation of S-adenosylmethionine [...] (392 aa)
     •• 0.927
METK3
RecName- Full=S-adenosylmethionine synthetase; EC=2.5.1.6;; Catalyzes the formation of S-adenos [...] (396 aa)
     •• 0.927
AdoMet3
s-adenosylmethionine synthetase 3 (EC-2.5.1.6); Catalyzes the formation of S-adenosylmethionine [...] (395 aa)
     •• 0.927
METK4
RecName- Full=S-adenosylmethionine synthetase; EC=2.5.1.6;; Catalyzes the formation of S-adenos [...] (391 aa)
     •• 0.927
METK2
RecName- Full=S-adenosylmethionine synthetase; EC=2.5.1.6;; Catalyzes the formation of S-adenos [...] (393 aa)
     •• 0.926
METK1
RecName- Full=S-adenosylmethionine synthetase; EC=2.5.1.6;; Catalyzes the formation of S-adenos [...] (393 aa)
     •• 0.926
AMT7
aminotransferase family protein (EC-2.6.1.5) (407 aa)
     •  0.899
fgenesh4_pg.C_LG_III001784
methionine gamma-lyase (EC-4.4.1.11) (417 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query216
PLN02489 335 PLN02489, PLN02489, homocysteine S-methyltransfera 1e-131
PRK09485 304 PRK09485, mmuM, homocysteine methyltransferase; Pr 9e-85
pfam02574 303 pfam02574, S-methyl_trans, Homocysteine S-methyltr 1e-56
COG2040 300 COG2040, MHT1, Homocysteine/selenocysteine methyla 1e-55
COG0646 311 COG0646, MetH, Methionine synthase I (cobalamin-de 1e-16
PRK08645 612 PRK08645, PRK08645, bifunctional homocysteine S-me 8e-15
TIGR02082 1178 TIGR02082, metH, 5-methyltetrahydrofolate--homocys 7e-06
PRK07534 336 PRK07534, PRK07534, methionine synthase I; Validat 2e-05
PRK09490 1229 PRK09490, metH, B12-dependent methionine synthase; 2e-05
>gnl|CDD|215269 PLN02489, PLN02489, homocysteine S-methyltransferase Back     alignment and domain information 
 Score =  373 bits (959), Expect = e-131
 Identities = 137/199 (68%), Positives = 167/199 (83%), Gaps = 1/199 (0%)

Query: 1   MVSGSNGTTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKV 60
                   +S + D L++ GG +V+DGGFATELERHGADLNDPLWSAKCL++SPHL+RKV
Sbjct: 1   GGYVLPQMSSLLEDLLRQAGGCAVIDGGFATELERHGADLNDPLWSAKCLITSPHLIRKV 60

Query: 61  HLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDS 120
           HLDYL+AGA+IIITASYQATIQGFE++G S EE+E LLR+SVEIACEAR+I++D+C K S
Sbjct: 61  HLDYLEAGADIIITASYQATIQGFESRGLSREESETLLRKSVEIACEARDIFWDKCQKGS 120

Query: 121 WDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANS 180
               G   +S RP+LVAAS+GSYGAYLADGSEYSGDYG +V+LE LK+FHRRR+ +LA +
Sbjct: 121 TSRPG-RELSYRPILVAASIGSYGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQVLAEA 179

Query: 181 GADLIAFETIPNKLEAKVF 199
           G DLIAFETIPNKLEA+ +
Sbjct: 180 GPDLIAFETIPNKLEAQAY 198

Length = 335
>gnl|CDD|181899 PRK09485, mmuM, homocysteine methyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|217114 pfam02574, S-methyl_trans, Homocysteine S-methyltransferase Back     alignment and domain information
>gnl|CDD|224951 COG2040, MHT1, Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|223719 COG0646, MetH, Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|236321 PRK08645, PRK08645, bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed Back     alignment and domain information
>gnl|CDD|233714 TIGR02082, metH, 5-methyltetrahydrofolate--homocysteine methyltransferase Back     alignment and domain information
>gnl|CDD|236045 PRK07534, PRK07534, methionine synthase I; Validated Back     alignment and domain information
>gnl|CDD|236539 PRK09490, metH, B12-dependent methionine synthase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 216
PLN02489 335 homocysteine S-methyltransferase 100.0
PRK09485 304 mmuM homocysteine methyltransferase; Provisional 100.0
KOG1579 317 consensus Homocysteine S-methyltransferase [Amino 100.0
PF02574 305 S-methyl_trans: Homocysteine S-methyltransferase; 100.0
COG2040 300 MHT1 Homocysteine/selenocysteine methylase (S-meth 100.0
PRK07534 336 methionine synthase I; Validated 100.0
COG0646 311 MetH Methionine synthase I (cobalamin-dependent), 100.0
PRK09490 1229 metH B12-dependent methionine synthase; Provisiona 100.0
PRK08645 612 bifunctional homocysteine S-methyltransferase/5,10 100.0
TIGR02082 1178 metH 5-methyltetrahydrofolate--homocysteine methyl 100.0
cd00377243 ICL_PEPM Members of the ICL/PEPM enzyme family cat 93.87
PRK15063 428 isocitrate lyase; Provisional 93.67
PRK11320292 prpB 2-methylisocitrate lyase; Provisional 92.45
TIGR02317285 prpB methylisocitrate lyase. Members of this famil 91.28
COG2224 433 AceA Isocitrate lyase [Energy production and conve 90.73
PF03437 254 BtpA: BtpA family; InterPro: IPR005137 Photosystem 89.29
PF13714238 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB 89.21
TIGR02320285 PEP_mutase phosphoenolpyruvate phosphomutase. A cl 89.18
COG0159 265 TrpA Tryptophan synthase alpha chain [Amino acid t 88.32
TIGR00259 257 thylakoid_BtpA membrane complex biogenesis protein 87.12
PRK00865 261 glutamate racemase; Provisional 84.78
COG0434 263 SgcQ Predicted TIM-barrel enzyme [General function 84.2
COG5309305 Exo-beta-1,3-glucanase [Carbohydrate transport and 83.32
CHL00200 263 trpA tryptophan synthase alpha subunit; Provisiona 83.31
PRK13111 258 trpA tryptophan synthase subunit alpha; Provisiona 82.52
COG2513289 PrpB PEP phosphonomutase and related enzymes [Carb 82.22
PF00701 289 DHDPS: Dihydrodipicolinate synthetase family; Inte 82.1
PRK05692287 hydroxymethylglutaryl-CoA lyase; Provisional 82.0
PLN02591 250 tryptophan synthase 81.87
cd00952 309 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate 81.63
PLN02495 385 oxidoreductase, acting on the CH-CH group of donor 80.62
cd00958235 DhnA Class I fructose-1,6-bisphosphate (FBP) aldol 80.54
>PLN02489 homocysteine S-methyltransferase Back     alignment and domain information 
Probab=100.00  E-value=2.2e-51  Score=368.39  Aligned_cols=206  Identities=67%  Similarity=1.095  Sum_probs=180.9

Q ss_pred             hHHHHHHhccCCeEEEecchHHHHHHCCCCCCCccccccccCCChHHHHHHHHHHHHhcCCeeeccccccCHHHHHhcCC
Q 027947           10 SFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGF   89 (216)
Q Consensus        10 ~~l~~~l~~~~~~lllDGg~gT~L~~~g~~~~~~~ws~~~ll~~pe~V~~iH~~Yl~AGadiI~TnTy~a~~~~l~~~g~   89 (216)
                      ..|+++|++.++++||||||||+|+++|++...|+|++.+|+++||.|+++|++|++||||||+|||||+|+.+|.++|+
T Consensus        10 ~~~~~~l~~~~~~lilDGgmGT~Le~~g~~~~~~lws~~~ll~~Pe~V~~vH~~yl~AGAdvI~TnTy~a~~~~l~~~g~   89 (335)
T PLN02489         10 SLLEDLLRQAGGCAVIDGGFATELERHGADLNDPLWSAKCLITSPHLIRKVHLDYLEAGADIIITASYQATIQGFESRGL   89 (335)
T ss_pred             HHHHHHHHhcCCEEEEEChHHHHHHhCCCCCCCCccchhhhcCCHHHHHHHHHHHHHhCCCEEEecccccCHHHHHHcCC
Confidence            56788888655799999999999999999988899999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHHH
Q 027947           90 STEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEF  169 (216)
Q Consensus        90 ~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~~  169 (216)
                      +.+++++++++||++|++|+++|.+++....+ .+.+....+++++|+|||||+|+++.+|+||+|+|++.+++++++++
T Consensus        90 ~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~VaGsiGP~g~~l~~g~ey~g~y~~~~~~~e~~~~  168 (335)
T PLN02489         90 SREESETLLRKSVEIACEARDIFWDKCQKGST-SRPGRELSYRPILVAASIGSYGAYLADGSEYSGDYGPSVTLEKLKDF  168 (335)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhhhcccccc-cccccccCCCCcEEEEEcCCccccccCCcccCCCCccCCCHHHHHHH
Confidence            87889999999999999999887432110000 00000112457999999999999999999999999977899999999


Q ss_pred             HHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhC-CcccccccC
Q 027947          170 HRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQ-RKMLLKKFV  216 (216)
Q Consensus       170 h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~-~~~~~~~~~  216 (216)
                      |++|+++|+++|||+|+|||||++.|++++++++++.. ++|++.+|.
T Consensus       169 ~~~qi~~l~~~gvD~i~~ET~~~l~E~~a~~~~~~~~~~~~p~~iS~t  216 (335)
T PLN02489        169 HRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLEEENIKIPAWISFN  216 (335)
T ss_pred             HHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHHHHcCCCCeEEEEEE
Confidence            99999999999999999999999999999999999875 699999883

>PRK09485 mmuM homocysteine methyltransferase; Provisional Back     alignment and domain information
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism] Back     alignment and domain information
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2 Back     alignment and domain information
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism] Back     alignment and domain information
>PRK07534 methionine synthase I; Validated Back     alignment and domain information
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09490 metH B12-dependent methionine synthase; Provisional Back     alignment and domain information
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed Back     alignment and domain information
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase Back     alignment and domain information
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage Back     alignment and domain information
>PRK15063 isocitrate lyase; Provisional Back     alignment and domain information
>PRK11320 prpB 2-methylisocitrate lyase; Provisional Back     alignment and domain information
>TIGR02317 prpB methylisocitrate lyase Back     alignment and domain information
>COG2224 AceA Isocitrate lyase [Energy production and conversion] Back     alignment and domain information
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane Back     alignment and domain information
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B Back     alignment and domain information
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase Back     alignment and domain information
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family Back     alignment and domain information
>PRK00865 glutamate racemase; Provisional Back     alignment and domain information
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only] Back     alignment and domain information
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] Back     alignment and domain information
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional Back     alignment and domain information
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional Back     alignment and domain information
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants Back     alignment and domain information
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional Back     alignment and domain information
>PLN02591 tryptophan synthase Back     alignment and domain information
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) Back     alignment and domain information
>PLN02495 oxidoreductase, acting on the CH-CH group of donors Back     alignment and domain information
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query216
1umy_A 407 Bhmt From Rat Liver Length = 407 2e-05
1q7m_A 566 Cobalamin-Dependent Methionine Synthase (Meth) From 2e-05
1lt7_A 406 Oxidized Homo Sapiens Betaine-Homocysteine S-Methyl 2e-05
1q85_A 566 Cobalamin-Dependent Methionine Synthase (1-566) Fro 6e-05
>pdb|1UMY|A Chain A, Bhmt From Rat Liver Length = 407 Back     alignment and structure 
Iteration: 1

 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 11/110 (10%)
Query: 26  DGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFE 85
           DGGF   LE+ G     P W+ +  V  P  VR++H ++L AG+N++ T ++ A+    E
Sbjct: 26  DGGFVFALEKRGYVKAGP-WTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFYASEDKLE 84
Query: 86  AKGFSTEEAEALLRRSV-EIACE-AREIYYDRCMKDSWDFTGSGRISSRP 133
            +G     AE +  + V E AC+ AR++       D  D   +G +S  P
Sbjct: 85  NRGNYV--AEKISGQKVNEAACDIARQV------ADEGDALVAGGVSQTP 126
>pdb|1Q7M|A Chain A, Cobalamin-Dependent Methionine Synthase (Meth) From Thermotoga Maritima (Oxidized, Monoclinic) Length = 566 Back     alignment and structure
>pdb|1LT7|A Chain A, Oxidized Homo Sapiens Betaine-Homocysteine S-Methyltransferase In Complex With Four Sm(Iii) Ions Length = 406 Back     alignment and structure
>pdb|1Q85|A Chain A, Cobalamin-Dependent Methionine Synthase (1-566) From Thermotoga Maritima (Cd2+ Complex, Se-Met) Length = 566 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query216
1lt8_A 406 Betaine-homocysteine methyltransferase; homocystei 2e-26
1q7z_A 566 5-methyltetrahydrofolate S-homocysteine methyltran 9e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A* 1umy_A Length = 406 Back     alignment and structure
 Score =  103 bits (259), Expect = 2e-26
 Identities = 40/196 (20%), Positives = 73/196 (37%), Gaps = 37/196 (18%)

Query: 7   GTTSFMTDFLQKCGGYSVV--DGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDY 64
           G        L++     +V  DGGF   LE+ G     P W+ +  V  P  VR++H ++
Sbjct: 5   GGKKAKKGILERLNAGEIVIGDGGFVFALEKRGYVKAGP-WTPEAAVEHPEAVRQLHREF 63

Query: 65  LDAGANIIITASYQATIQGFEAKGFSTEE---AEALLRRSVEIACEAREIYYDRCMKDSW 121
           L AG+N++ T ++ A+    E +G    E    + +   + +IA +  +           
Sbjct: 64  LRAGSNVMQTFTFYASEDKLENRGNYVLEKISGQEVNEAAADIARQVAD----------- 112

Query: 122 DFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSG 181
                        LVA  V    +YL+             S   +K+   +++ +     
Sbjct: 113 ---------EGDALVAGGVSQTPSYLSA-----------KSETEVKKVFLQQLEVFMKKN 152

Query: 182 ADLIAFETIPNKLEAK 197
            D +  E   +  EA 
Sbjct: 153 VDFLIAEYFEHVEEAV 168
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A Length = 566 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query216
1lt8_A 406 Betaine-homocysteine methyltransferase; homocystei 100.0
1q7z_A 566 5-methyltetrahydrofolate S-homocysteine methyltran 100.0
3eol_A 433 Isocitrate lyase; seattle structural center for in 94.61
2ze3_A275 DFA0005; organic waste LEFT-OVER decomposition, al 93.85
3i4e_A 439 Isocitrate lyase; structural genomics, seattle str 92.48
3lg3_A 435 Isocitrate lyase; conserved, CD, proteomics eviden 91.62
3eoo_A298 Methylisocitrate lyase; seattle structural genomic 91.36
1zlp_A318 PSR132, petal death protein; TIM-barrel, helix swa 91.08
1s2w_A295 Phosphoenolpyruvate phosphomutase; phosphonopyruva 91.07
1xg4_A295 Probable methylisocitrate lyase; 2-methylisocitrat 90.91
2hjp_A290 Phosphonopyruvate hydrolase; phosporus-Ca cleavage 90.27
3ih1_A305 Methylisocitrate lyase; alpha-beta structure, TIM- 89.86
3lye_A307 Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre 89.05
2ftp_A302 Hydroxymethylglutaryl-COA lyase; structural genomi 88.86
3nav_A 271 Tryptophan synthase alpha chain; alpha subunit, st 88.45
1q7z_A 566 5-methyltetrahydrofolate S-homocysteine methyltran 88.41
3b8i_A287 PA4872 oxaloacetate decarboxylase; alpha/beta barr 88.11
1ydn_A295 Hydroxymethylglutaryl-COA lyase; TIM-barrel protei 86.68
3qze_A 314 DHDPS, dihydrodipicolinate synthase; alpha beta ba 86.36
2qiw_A255 PEP phosphonomutase; structural genomics, joint ce 85.35
3qfe_A 318 Putative dihydrodipicolinate synthase family PROT; 85.23
3tak_A 291 DHDPS, dihydrodipicolinate synthase; TIM barrel, l 85.12
1ydo_A307 HMG-COA lyase; TIM-barrel protein, structural geno 85.12
2vc6_A 292 MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar 84.89
2ehh_A 294 DHDPS, dihydrodipicolinate synthase; structural ge 84.86
3flu_A 297 DHDPS, dihydrodipicolinate synthase; TIM barrel, b 84.68
3vnd_A 267 TSA, tryptophan synthase alpha chain; psychrophili 84.56
2v9d_A 343 YAGE; dihydrodipicolinic acid synthase, N-acetyl n 84.19
3ist_A 269 Glutamate racemase; structural genomics, cell WALL 84.14
2r8w_A 332 AGR_C_1641P; APC7498, dihydrodipicolinate synthase 84.13
3na8_A 315 Putative dihydrodipicolinate synthetase; lyase; HE 84.03
1lt8_A 406 Betaine-homocysteine methyltransferase; homocystei 83.9
3a5f_A 291 Dihydrodipicolinate synthase; TIM barrel, enzyme, 83.79
1xky_A 301 Dihydrodipicolinate synthase; TIM barrel, , lysine 83.69
3b4u_A 294 Dihydrodipicolinate synthase; structural genomics, 83.59
2ojp_A 292 DHDPS, dihydrodipicolinate synthase; dimer, lysine 83.51
2rfg_A 297 Dihydrodipicolinate synthase; beta barrel, amino-a 83.5
3daq_A 292 DHDPS, dihydrodipicolinate synthase; lysine biosyn 83.39
3si9_A 315 DHDPS, dihydrodipicolinate synthase; structural ge 82.93
3s5o_A 307 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; 82.14
3m47_A228 Orotidine 5'-phosphate decarboxylase; orotidine 5' 82.01
3cpr_A 304 Dihydrodipicolinate synthetase; (beta/alpha)8-barr 81.99
2yxg_A 289 DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b 81.85
3fa4_A302 2,3-dimethylmalate lyase; alpha/beta barrel, helix 81.48
3fkr_A 309 L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f 81.48
1f6k_A 293 N-acetylneuraminate lyase; beta barrel; 1.60A {Hae 81.37
1o5k_A 306 DHDPS, dihydrodipicolinate synthase; TM1521, struc 81.27
3l21_A 304 DHDPS, dihydrodipicolinate synthase; DAPA, dimer, 80.83
3m5v_A 301 DHDPS, dihydrodipicolinate synthase; TIM barrel, c 80.35
>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A* 1umy_A Back     alignment and structure
Probab=100.00  E-value=4.9e-44  Score=326.50  Aligned_cols=173  Identities=23%  Similarity=0.335  Sum_probs=148.8

Q ss_pred             hHHHHHHhccCCeEEEecchHHHHHHCCCCCCCccccccccCCChHHHHHHHHHHHHhcCCeeeccccccCHHHHHhcCC
Q 027947           10 SFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGF   89 (216)
Q Consensus        10 ~~l~~~l~~~~~~lllDGg~gT~L~~~g~~~~~~~ws~~~ll~~pe~V~~iH~~Yl~AGadiI~TnTy~a~~~~l~~~g~   89 (216)
                      ..|.+.|++ ++++||||||||+|+++|++.. ++|++.+++++||.|+++|++|++||||||+||||++|+.+|.++|+
T Consensus        11 ~~l~~~L~~-~~ilIlDGgmGT~L~~~G~~~~-~~ws~~l~l~~Pe~V~~iH~~Yl~AGAdII~TNTf~A~~~~l~~~G~   88 (406)
T 1lt8_A           11 KGILERLNA-GEIVIGDGGFVFALEKRGYVKA-GPWTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFYASEDKLENRGN   88 (406)
T ss_dssp             CCHHHHHHT-TCCEECCCCHHHHHHHHTSSCT-TTCCCTHHHHCHHHHHHHHHHHHHTTCSEEECSCTTCSSCC------
T ss_pred             HHHHHHHhc-CCEEEEeCccchHHHHCCCCCC-cccchHhhccCHHHHHHHHHHHHHhCccceeccccccCHHHHHhcCC
Confidence            468888984 3599999999999999999853 58999999999999999999999999999999999999999999997


Q ss_pred             CH---HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHH
Q 027947           90 ST---EEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETL  166 (216)
Q Consensus        90 ~~---~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~  166 (216)
                      +.   +++++||++||+|||+|++.                    .+++|||||||+|.++.           .++++++
T Consensus        89 ~~~~~~~~~eln~~Av~LAreAa~~--------------------~~~~VAGsIGP~g~~l~-----------~~s~eel  137 (406)
T 1lt8_A           89 YVLEKISGQEVNEAAADIARQVADE--------------------GDALVAGGVSQTPSYLS-----------AKSETEV  137 (406)
T ss_dssp             -------CHHHHHHHHHHHHHHHTT--------------------TTCEEEEEECCCHHHHT-----------TCHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHhc--------------------CCCEEEEEcCCcccccC-----------CCCHHHH
Confidence            52   45789999999999999842                    25899999999998652           3799999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCCcccccccC
Q 027947          167 KEFHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRKMLLKKFV  216 (216)
Q Consensus       167 ~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~~~~~~~~  216 (216)
                      +++|++|+++|+++|||+|++||||++.|++++++++++.+ +|+..+|.
T Consensus       138 ~~~~~eqi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~-lPv~iS~T  186 (406)
T 1lt8_A          138 KKVFLQQLEVFMKKNVDFLIAEYFEHVEEAVWAVETLIASG-KPVAATMA  186 (406)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEECCCSCHHHHHHHHHHHGGGT-SCEEEEEC
T ss_pred             HHHHHHHHHHHhhCCCCEEEEcccCCHHHHHHHHHHHHHhC-CcEEEEEE
Confidence            99999999999999999999999999999999999999865 99999884
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A Back     alignment and structure
>3eol_A Isocitrate lyase; seattle structural center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3oq8_A 3e5b_A 3p0x_A* Back     alignment and structure
>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} Back     alignment and structure
>3i4e_A Isocitrate lyase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.69A {Burkholderia pseudomallei} Back     alignment and structure
>3lg3_A Isocitrate lyase; conserved, CD, proteomics evidence (cytopl periplasmic), drug target functions; 1.40A {Yersinia pestis} SCOP: c.1.12.7 PDB: 1igw_A Back     alignment and structure
>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 Back     alignment and structure
>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} Back     alignment and structure
>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A Back     alignment and structure
>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A Back     alignment and structure
>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A Back     alignment and structure
>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A Back     alignment and structure
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} Back     alignment and structure
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 Back     alignment and structure
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A Back     alignment and structure
>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} Back     alignment and structure
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} Back     alignment and structure
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A Back     alignment and structure
>2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} Back     alignment and structure
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A Back     alignment and structure
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} Back     alignment and structure
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} Back     alignment and structure
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} Back     alignment and structure
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 Back     alignment and structure
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} Back     alignment and structure
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* Back     alignment and structure
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A* Back     alignment and structure
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} Back     alignment and structure
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} Back     alignment and structure
>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A* 1umy_A Back     alignment and structure
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* Back     alignment and structure
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* Back     alignment and structure
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} Back     alignment and structure
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A Back     alignment and structure
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} Back     alignment and structure
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A Back     alignment and structure
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} Back     alignment and structure
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A Back     alignment and structure
>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ... Back     alignment and structure
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} Back     alignment and structure
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} Back     alignment and structure
>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A Back     alignment and structure
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A Back     alignment and structure
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* Back     alignment and structure
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A Back     alignment and structure
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A Back     alignment and structure
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 216
d1lt7a_ 361 c.1.26.1 (A:) Betaine-homocysteine S-methyltransfe 9e-22
d3bofa2 300 c.1.26.1 (A:1-300) Cobalamin-dependent methionine 7e-20
>d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 361 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Homocysteine S-methyltransferase
family: Homocysteine S-methyltransferase
domain: Betaine-homocysteine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.6 bits (221), Expect = 9e-22
 Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 4/100 (4%)

Query: 24  VVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQG 83
           + DGGF   LE+ G     P W+ +  V  P  VR++H ++L AG+N++ T ++ A+   
Sbjct: 14  IGDGGFVFALEKRGYVKAGP-WTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFYASEDK 72

Query: 84  FEAKG---FSTEEAEALLRRSVEIACEAREIYYDRCMKDS 120
            E +G         + +   + +IA +  +          
Sbjct: 73  LENRGNYVLEKISGQEVNEAAADIARQVADEGDALVAGGV 112
>d3bofa2 c.1.26.1 (A:1-300) Cobalamin-dependent methionine synthase MetH, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query216
d1lt7a_ 361 Betaine-homocysteine S-methyltransferase {Human (H 100.0
d3bofa2 300 Cobalamin-dependent methionine synthase MetH, N-te 100.0
d1igwa_416 Isocitrate lyase {Escherichia coli [TaxId: 562]} 92.93
d1muma_289 2-methylisocitrate lyase {Escherichia coli [TaxId: 87.75
d1xxxa1 296 Dihydrodipicolinate synthase {Mycobacterium tuberc 84.01
d1gg4a1135 UDP-murNac-tripeptide D-alanyl-D-alanine-adding en 83.82
d1o5ka_ 295 Dihydrodipicolinate synthase {Thermotoga maritima 81.99
d1s2wa_275 Phosphoenolpyruvate mutase {Blue mussel (Mytilus e 80.66
d1xkya1 292 Dihydrodipicolinate synthase {Bacillus anthracis [ 80.29
d1ur3m_ 298 Hypothetical oxidoreductase YdhF {Escherichia coli 80.08
>d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Homocysteine S-methyltransferase
family: Homocysteine S-methyltransferase
domain: Betaine-homocysteine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-42  Score=306.20  Aligned_cols=171  Identities=23%  Similarity=0.352  Sum_probs=124.9

Q ss_pred             HHHHHhccCCeEEEecchHHHHHHCCCCCCCccccccccCCChHHHHHHHHHHHHhcCCeeeccccccCHHHHHhcCCC-
Q 027947           12 MTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFS-   90 (216)
Q Consensus        12 l~~~l~~~~~~lllDGg~gT~L~~~g~~~~~~~ws~~~ll~~pe~V~~iH~~Yl~AGadiI~TnTy~a~~~~l~~~g~~-   90 (216)
                      |.+.|++ ++++||||||||+|+++|+...+ .|++.+++++||.|+++|++|++||||||+||||++|+.+|.++|.. 
T Consensus         3 llerL~~-~~ililDGgmGteL~~rG~~~~~-~Ws~~~~l~~Pe~V~~iH~~yi~AGAdiI~TNTy~a~~~~l~~~g~~~   80 (361)
T d1lt7a_           3 ILERLNA-GEIVIGDGGFVFALEKRGYVKAG-PWTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFYASEDKLENRGNYV   80 (361)
T ss_dssp             HHHHHHT-TCCEECCTTHHHHHHHHTC--------------CHHHHHHHHHHHHHHTCSEEEEEC---------------
T ss_pred             HHHHhcc-CCEEEEECHHHHHHHHCCCCCCC-CCChHHHhhChHHHHHHHHHHHHhCCCEEEeCCCcCCHHHHHhhchhh
Confidence            5667764 68999999999999999986544 49999999999999999999999999999999999999999888732 


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEecCCcccCcCCCCCCCCCCCCCCCHHHHHH
Q 027947           91 --TEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKE  168 (216)
Q Consensus        91 --~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VaGsiGP~g~~l~~gseY~g~y~~~~s~ee~~~  168 (216)
                        .....+++++++++|+++++.                    .+++|+||+||++.+..           ..+.+++++
T Consensus        81 ~~~~~~~~~~~aa~~~a~~~~~~--------------------~~~~VaGsigp~~~~~~-----------~~~~~~~~~  129 (361)
T d1lt7a_          81 LEKISGQEVNEAAADIARQVADE--------------------GDALVAGGVSQTPSYLS-----------AKSETEVKK  129 (361)
T ss_dssp             --------CHHHHHHHHHHHHHT--------------------TTCEEEEEECCCHHHHT-----------TCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccc--------------------ccceeeccccCCccccc-----------ccchHHHHH
Confidence              223457899999999998753                    36899999999998643           257899999


Q ss_pred             HHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHHHhCCcccccccC
Q 027947          169 FHRRRVLILANSGADLIAFETIPNKLEAKVFSKYVIINQRKMLLKKFV  216 (216)
Q Consensus       169 ~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~a~~~~~~~~~~~~~~  216 (216)
                      +|++|+++|.++|||+|++|||+++.|++++++++++. .+|+..+|.
T Consensus       130 ~~~~q~~~l~~~gvD~il~ETm~~~~Ea~~a~~a~~~~-~~Pv~~s~t  176 (361)
T d1lt7a_         130 VFLQQLEVFMKKNVDFLIAEYFEHVEEAVWAVETLIAS-GKPVAATMA  176 (361)
T ss_dssp             HHHHHHHHHHHTTCSEEEECCCSCHHHHHHHHHHHGGG-SSCEEEEEC
T ss_pred             HHHHHHHHHHhhccchhhhHHHhhHHHHHHHHHHHhhc-cceEEEEEE
Confidence            99999999999999999999999999999999999985 589998874
>d3bofa2 c.1.26.1 (A:1-300) Cobalamin-dependent methionine synthase MetH, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1igwa_ c.1.12.7 (A:) Isocitrate lyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1gg4a1 c.59.1.1 (A:313-447) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} Back     information, alignment and structure
>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1ur3m_ c.1.7.1 (M:) Hypothetical oxidoreductase YdhF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure