Citrus Sinensis ID: 027948

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210------
MNDFTFIALVKGNIFFPLFPGLLIWQSSHSCGQVIIEALLSAHLIGASERALMPGILSISTLVWPHLCTNSRQVVKMSATGIRKPGFESPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFVFP
ccccEEEEEEEcccccccccccEEEcccccHHHHHHHHHHHHHHccHHHHHHcccccccccccccccccccHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEEEccEEEEcHHHHHHHHHHHccccEEEEEcccccccccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHcccccc
cccEEEEEEEcccccccccccEEEEEcccccHHHHHHHHHHHHHcccHHHHHccccccccccccccccccccEEEEEccccccccHcccccccccccccHHHHHHHHHHHHHHccccccccHcEEccccccEEEEEEEccccEEccHHHHHHHHHHccccEEEEEEEccccccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
MNDFTFIALVkgniffplfpglliwqsSHSCGQVIIEALLSAHLIgaseralmpGILSISTlvwphlctnsRQVVKMSAtgirkpgfespaiklpshptydlkGVVKLALAedagdrgdvtcmatiPLDMEVEAHFLAKEDGIIAGIALAEMIFhevdpslkvewslkdgdhvhkglqfgkvsgRAHSIVIAERVVLNFMQRMSgiatltrvfvfp
MNDFTFIALVKGNIFFPLFPGLLIWQSSHSCGQVIIEALLSAHLIGASERALMPGILSISTLVWPHLCTNSRQVVKMSATGIRKPgfespaiklpshptYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLqfgkvsgraHSIVIAERVVLNFMQRMsgiatltrvfvfp
MNDFTFIALVKGNIFFPLFPGLLIWQSSHSCGQVIIEALLSAHLIGASERALMPGILSISTLVWPHLCTNSRQVVKMSATGIRKPGFESPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFVFP
***FTFIALVKGNIFFPLFPGLLIWQSSHSCGQVIIEALLSAHLIGASERALMPGILSISTLVWPHLCTNSRQVVKMSATGIRKPGFESPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFVF*
**DFTFIALVKGNIFFPLFPGLLIWQSSHSCGQVIIEALLSAHLIGASERALMPGILSISTLVWPHLCT**********************IKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFVFP
MNDFTFIALVKGNIFFPLFPGLLIWQSSHSCGQVIIEALLSAHLIGASERALMPGILSISTLVWPHLCTNSRQVVKMSATGIRKPGFESPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFVFP
*NDFTFIALVKGNIFFPLFPGLLIWQSSHSCGQVIIEALLSAHLIGASERALMPGILSISTLVWPHLCTNSRQVVKMSAT*IRKPGFESPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFVFP
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNDFTFIALVKGNIFFPLFPGLLIWQSSHSCGQVIIEALLSAHLIGASERALMPGILSISTLVWPHLCTNSRQVVKMSATGIRKPGFESPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFVFP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query216 2.2.26 [Sep-21-2011]
P77938 296 Probable nicotinate-nucle yes no 0.550 0.402 0.395 6e-18
P30819 282 Nicotinate-nucleotide pyr yes no 0.546 0.418 0.354 9e-13
P74301 295 Probable nicotinate-nucle N/A no 0.476 0.349 0.380 2e-11
P39666 289 Probable nicotinate-nucle yes no 0.5 0.373 0.4 2e-11
O27860 279 Probable nicotinate-nucle yes no 0.421 0.326 0.397 2e-10
P30012 297 Nicotinate-nucleotide pyr yes no 0.527 0.383 0.305 4e-10
A7SG73 289 Nicotinate-nucleotide pyr N/A no 0.356 0.266 0.405 1e-08
P46714 284 Nicotinate-nucleotide pyr yes no 0.518 0.394 0.324 2e-08
P43619 295 Nicotinate-nucleotide pyr yes no 0.370 0.271 0.329 8e-08
O28439 258 Probable nicotinate-nucle yes no 0.402 0.337 0.354 2e-07
>sp|P77938|NADC_RHORU Probable nicotinate-nucleotide pyrophosphorylase [carboxylating] OS=Rhodospirillum rubrum GN=nadC PE=3 SV=1 Back     alignment and function desciption
 Score = 90.9 bits (224), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 49/124 (39%), Positives = 70/124 (56%), Gaps = 5/124 (4%)

Query: 95  PSHPT-----YDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIAL 149
           P+HP      + +   V+ ALAED G  GD+T  ATIP      A F+A++ GI+AG+  
Sbjct: 3   PNHPVAALSPFAIDEAVRRALAEDLGRAGDITSTATIPAATRAHARFVARQPGILAGLGC 62

Query: 150 AEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATL 209
           A   F  +D ++     L+DG  +  G    +V+G A +I+ AER  LNF+  +SGIAT 
Sbjct: 63  ARSAFALLDDTVTFTTPLEDGAEIAAGQTVAEVAGAARTILAAERTALNFLGHLSGIATR 122

Query: 210 TRVF 213
           TR F
Sbjct: 123 TRRF 126
Involved in the catabolism of quinolinic acid (QA).
Rhodospirillum rubrum (taxid: 1085)
EC: 2EC: .EC: 4EC: .EC: 2EC: .EC: 1EC: 9
>sp|P30819|NADC_PSEAE Nicotinate-nucleotide pyrophosphorylase [carboxylating] OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=nadC PE=3 SV=2 Back     alignment and function description
>sp|P74301|NADC_SYNY3 Probable nicotinate-nucleotide pyrophosphorylase [carboxylating] OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=nadC PE=3 SV=1 Back     alignment and function description
>sp|P39666|NADC_BACSU Probable nicotinate-nucleotide pyrophosphorylase [carboxylating] OS=Bacillus subtilis (strain 168) GN=nadC PE=1 SV=2 Back     alignment and function description
>sp|O27860|NADC_METTH Probable nicotinate-nucleotide pyrophosphorylase [carboxylating] OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=nadC PE=3 SV=1 Back     alignment and function description
>sp|P30012|NADC_SALTY Nicotinate-nucleotide pyrophosphorylase [carboxylating] OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=nadC PE=1 SV=3 Back     alignment and function description
>sp|A7SG73|NADC_NEMVE Nicotinate-nucleotide pyrophosphorylase [carboxylating] (Fragment) OS=Nematostella vectensis GN=qprt PE=3 SV=1 Back     alignment and function description
>sp|P46714|NADC_MYCLE Nicotinate-nucleotide pyrophosphorylase [carboxylating] OS=Mycobacterium leprae (strain TN) GN=nadC PE=3 SV=1 Back     alignment and function description
>sp|P43619|NADC_YEAST Nicotinate-nucleotide pyrophosphorylase [carboxylating] OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BNA6 PE=1 SV=1 Back     alignment and function description
>sp|O28439|NADC_ARCFU Probable nicotinate-nucleotide pyrophosphorylase [carboxylating] OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=nadC PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query216
255570096 353 Nicotinate-nucleotide pyrophosphorylase 0.745 0.456 0.742 5e-65
356530754 377 PREDICTED: probable nicotinate-nucleotid 0.740 0.424 0.740 9e-62
363807606 377 uncharacterized protein LOC100776131 [Gl 0.648 0.371 0.802 3e-60
217072004 374 unknown [Medicago truncatula] 0.648 0.374 0.795 4e-60
359472633 363 PREDICTED: probable nicotinate-nucleotid 0.657 0.391 0.784 1e-59
388495338217 unknown [Medicago truncatula] 0.648 0.645 0.795 2e-59
224101821 329 predicted protein [Populus trichocarpa] 0.634 0.416 0.798 3e-59
111035808 350 putative quinolinate phosphirobosyltrans 0.740 0.457 0.714 4e-59
297817722 348 hypothetical protein ARALYDRAFT_484052 [ 0.731 0.454 0.696 2e-58
18379203 348 quinolinate phoshoribosyltransferase [Ar 0.731 0.454 0.696 2e-57
>gi|255570096|ref|XP_002526010.1| Nicotinate-nucleotide pyrophosphorylase [carboxylating], putative [Ricinus communis] gi|223534657|gb|EEF36350.1| Nicotinate-nucleotide pyrophosphorylase [carboxylating], putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  253 bits (645), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 121/163 (74%), Positives = 136/163 (83%), Gaps = 2/163 (1%)

Query: 53  MPGILSISTLVWPHLCTNSRQVVKMSATGIRKPG--FESPAIKLPSHPTYDLKGVVKLAL 110
           M  +   S L  PH  T SR++V+MSA   R P   F+S  IK PSHPTYDLKGV+KLAL
Sbjct: 1   MSAVTFNSLLTLPHFLTTSRRIVRMSAIDTRNPSTLFQSMTIKPPSHPTYDLKGVIKLAL 60

Query: 111 AEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDG 170
           AEDAGDRGDVTC+AT+P +MEVEA+FLAKEDGIIAGIALAEM+FHEVDPSL VEWS KDG
Sbjct: 61  AEDAGDRGDVTCIATVPSEMEVEAYFLAKEDGIIAGIALAEMLFHEVDPSLTVEWSRKDG 120

Query: 171 DHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVF 213
           D+VHKGLQFGKVSGRAH+IV+AERV LNFMQRMSGIATLT+  
Sbjct: 121 DYVHKGLQFGKVSGRAHNIVVAERVALNFMQRMSGIATLTKAM 163

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class: N/A

Phylum: Streptophyta

Superkingdom:

>gi|356530754|ref|XP_003533945.1| PREDICTED: probable nicotinate-nucleotide pyrophosphorylase [carboxylating]-like [Glycine max] Back     alignment and taxonomy information
>gi|363807606|ref|NP_001242666.1| uncharacterized protein LOC100776131 [Glycine max] gi|255641879|gb|ACU21208.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|217072004|gb|ACJ84362.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|359472633|ref|XP_002284233.2| PREDICTED: probable nicotinate-nucleotide pyrophosphorylase [carboxylating] [Vitis vinifera] Back     alignment and taxonomy information
>gi|388495338|gb|AFK35735.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|224101821|ref|XP_002312433.1| predicted protein [Populus trichocarpa] gi|222852253|gb|EEE89800.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|111035808|emb|CAH04306.1| putative quinolinate phosphirobosyltransferase [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|297817722|ref|XP_002876744.1| hypothetical protein ARALYDRAFT_484052 [Arabidopsis lyrata subsp. lyrata] gi|297322582|gb|EFH53003.1| hypothetical protein ARALYDRAFT_484052 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18379203|ref|NP_565259.1| quinolinate phoshoribosyltransferase [Arabidopsis thaliana] gi|16323163|gb|AAL15316.1| At2g01350/F10A8.23 [Arabidopsis thaliana] gi|20197586|gb|AAD14535.2| NADC homolog [Arabidopsis thaliana] gi|21436023|gb|AAM51589.1| At2g01350/F10A8.23 [Arabidopsis thaliana] gi|26450814|dbj|BAC42515.1| putative nicotinate-nucleotide pyrophosphorylase [Arabidopsis thaliana] gi|330250346|gb|AEC05440.1| quinolinate phoshoribosyltransferase [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query216
TAIR|locus:2038791 348 QPT "quinolinate phoshoribosyl 0.726 0.451 0.700 2.6e-54
TIGR_CMR|BA_4661 277 BA_4661 "nicotinate-nucleotide 0.458 0.357 0.46 7.7e-16
TIGR_CMR|GSU_1936 276 GSU_1936 "nicotinate-nucleotid 0.518 0.405 0.362 1.3e-15
TIGR_CMR|CBU_0098 274 CBU_0098 "nicotinate-nucleotid 0.513 0.405 0.353 3.3e-15
TIGR_CMR|CHY_2372 283 CHY_2372 "nicotinate-nucleotid 0.518 0.395 0.385 5.4e-15
TIGR_CMR|SPO_3245 288 SPO_3245 "nicotinate-nucleotid 0.587 0.440 0.362 2e-14
TIGR_CMR|DET_1382 285 DET_1382 "nicotinate-nucleotid 0.518 0.392 0.336 7.6e-14
TIGR_CMR|ECH_0026 279 ECH_0026 "nicotinate-nucleotid 0.495 0.383 0.375 3e-12
TIGR_CMR|CPS_4813 298 CPS_4813 "nicotinate-nucleotid 0.523 0.379 0.330 2.6e-11
TIGR_CMR|APH_0016 275 APH_0016 "nicotinate-nucleotid 0.490 0.385 0.350 1.9e-08
TAIR|locus:2038791 QPT "quinolinate phoshoribosyltransferase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 110/157 (70%), Positives = 127/157 (80%)

Query:    56 ILSISTLVWPHLCTNSRQVVKMSATGIRKPGFESPAIKLPSHPTYDLKGVVKLALAEDAG 115
             ++S+S  + P      R  VKMSA+  +  G  S  IK PSHPTYDLK V+KLALAEDAG
Sbjct:     1 MISVSRFLSPQFYAIPRSFVKMSASATQTAGEVSMGIKPPSHPTYDLKAVIKLALAEDAG 60

Query:   116 DRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHK 175
               GDVTCMATIP DMEVEA+FLAKEDGI+AG+ALA+MIF  VDPSLKVEW  KDGD+VHK
Sbjct:    61 HTGDVTCMATIPFDMEVEAYFLAKEDGIVAGVALADMIFEHVDPSLKVEWMRKDGDYVHK 120

Query:   176 GLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRV 212
             GL+FGKVSG AH IV+AERV+LNFMQRMSGIATLT++
Sbjct:   121 GLKFGKVSGNAHKIVVAERVLLNFMQRMSGIATLTKL 157
GO:0003824 "catalytic activity" evidence=IEA
GO:0004514 "nicotinate-nucleotide diphosphorylase (carboxylating) activity" evidence=IEA;IGI;ISS;IMP
GO:0009435 "NAD biosynthetic process" evidence=IEA;IGI;IMP
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016763 "transferase activity, transferring pentosyl groups" evidence=IEA
GO:0019363 "pyridine nucleotide biosynthetic process" evidence=IEA
TIGR_CMR|BA_4661 BA_4661 "nicotinate-nucleotide pyrophosphorylase, carboxylating" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1936 GSU_1936 "nicotinate-nucleotide pyrophosphorylase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0098 CBU_0098 "nicotinate-nucleotide pyrophosphorylase" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2372 CHY_2372 "nicotinate-nucleotide pyrophosphorylase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_3245 SPO_3245 "nicotinate-nucleotide pyrophosphorylase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1382 DET_1382 "nicotinate-nucleotide pyrophosphorylase" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0026 ECH_0026 "nicotinate-nucleotide pyrophosphorylase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_4813 CPS_4813 "nicotinate-nucleotide pyrophosphorylase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|APH_0016 APH_0016 "nicotinate-nucleotide pyrophosphorylase" [Anaplasma phagocytophilum HZ (taxid:212042)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_VIII0550
nicotinate-nucleotide diphosphorylase (carboxylating) (EC-2.4.2.19) (329 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.I.2445.1
L-aspartate oxidase (601 aa)
••••  • 0.969
estExt_fgenesh4_pg.C_LG_V0531
nicotinate phosphoribosyltransferase (EC-2.4.2.11) (559 aa)
•    •• 0.941
estExt_fgenesh4_pm.C_LG_VII0321
nicotinate phosphoribosyltransferase (EC-2.4.2.11) (560 aa)
•    •• 0.941
fgenesh4_pm.C_scaffold_308000002
nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase (EC-2.7.7 [...] (247 aa)
     •• 0.909
gw1.XIII.983.1
nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase (EC-2.7.7 [...] (237 aa)
     •• 0.909
gw1.70.673.1
nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase (EC-2.7.7 [...] (237 aa)
     •• 0.909
fgenesh4_pg.C_LG_XV000597
quinolinate synthetase A (724 aa)
     •• 0.907
grail3.0151001701
hypothetical protein (395 aa)
     •  0.899
grail3.0006001701
hypothetical protein (247 aa)
     •  0.900
fgenesh4_pg.C_scaffold_145000062
hypothetical protein (414 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query216
PLN02716 308 PLN02716, PLN02716, nicotinate-nucleotide diphosph 7e-75
cd01572 268 cd01572, QPRTase, Quinolinate phosphoribosyl trans 3e-48
cd01568 269 cd01568, QPRTase_NadC, Quinolinate phosphoribosyl 3e-41
COG0157 280 COG0157, NadC, Nicotinate-nucleotide pyrophosphory 4e-37
pfam0274988 pfam02749, QRPTase_N, Quinolinate phosphoribosyl t 7e-31
TIGR00078 265 TIGR00078, nadC, nicotinate-nucleotide pyrophospho 2e-30
PRK08072 277 PRK08072, PRK08072, nicotinate-nucleotide pyrophos 2e-29
PRK06543 281 PRK06543, PRK06543, nicotinate-nucleotide pyrophos 2e-28
PRK06106 281 PRK06106, PRK06106, nicotinate-nucleotide pyrophos 3e-24
PRK08385 278 PRK08385, PRK08385, nicotinate-nucleotide pyrophos 1e-23
PRK05742 277 PRK05742, PRK05742, nicotinate-nucleotide pyrophos 7e-22
PRK07896 289 PRK07896, PRK07896, nicotinate-nucleotide pyrophos 1e-21
PRK07428 288 PRK07428, PRK07428, nicotinate-nucleotide pyrophos 6e-19
PRK05848 273 PRK05848, PRK05848, nicotinate-nucleotide pyrophos 2e-17
cd00516 281 cd00516, PRTase_typeII, Phosphoribosyltransferase 4e-17
PRK06978 294 PRK06978, PRK06978, nicotinate-nucleotide pyrophos 6e-15
PRK06559 290 PRK06559, PRK06559, nicotinate-nucleotide pyrophos 8e-14
PRK09016 296 PRK09016, PRK09016, quinolinate phosphoribosyltran 1e-13
cd01573 272 cd01573, modD_like, ModD; Quinolinate phosphoribos 7e-06
PRK06096 284 PRK06096, PRK06096, molybdenum transport protein M 5e-05
TIGR01334 277 TIGR01334, modD, putative molybdenum utilization p 1e-04
>gnl|CDD|178318 PLN02716, PLN02716, nicotinate-nucleotide diphosphorylase (carboxylating) Back     alignment and domain information 
 Score =  228 bits (582), Expect = 7e-75
 Identities = 95/129 (73%), Positives = 110/129 (85%)

Query: 86  GFESPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIA 145
              + AI  PSHPTYD++ V+KLALAEDAGDRGDVTC+ATIP DME EA FLAK DG++A
Sbjct: 3   AEMAMAIPPPSHPTYDIEAVIKLALAEDAGDRGDVTCLATIPGDMEAEATFLAKADGVLA 62

Query: 146 GIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSG 205
           GIALA+M+F EVDPSLKVEW+  DGD VHKGL+FGKV+G AHSI++AERVVLNFMQRMSG
Sbjct: 63  GIALADMVFEEVDPSLKVEWAAIDGDFVHKGLKFGKVTGPAHSILVAERVVLNFMQRMSG 122

Query: 206 IATLTRVFV 214
           IATLT+   
Sbjct: 123 IATLTKAMA 131

Length = 308
>gnl|CDD|238806 cd01572, QPRTase, Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes Back     alignment and domain information
>gnl|CDD|238802 cd01568, QPRTase_NadC, Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes Back     alignment and domain information
>gnl|CDD|223235 COG0157, NadC, Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|217214 pfam02749, QRPTase_N, Quinolinate phosphoribosyl transferase, N-terminal domain Back     alignment and domain information
>gnl|CDD|232814 TIGR00078, nadC, nicotinate-nucleotide pyrophosphorylase Back     alignment and domain information
>gnl|CDD|181221 PRK08072, PRK08072, nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|180612 PRK06543, PRK06543, nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|180402 PRK06106, PRK06106, nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|236255 PRK08385, PRK08385, nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|180230 PRK05742, PRK05742, nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|236125 PRK07896, PRK07896, nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|236017 PRK07428, PRK07428, nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|180286 PRK05848, PRK05848, nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|238286 cd00516, PRTase_typeII, Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD Back     alignment and domain information
>gnl|CDD|235900 PRK06978, PRK06978, nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|235831 PRK06559, PRK06559, nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|181612 PRK09016, PRK09016, quinolinate phosphoribosyltransferase; Validated Back     alignment and domain information
>gnl|CDD|238807 cd01573, modD_like, ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport Back     alignment and domain information
>gnl|CDD|180397 PRK06096, PRK06096, molybdenum transport protein ModD; Provisional Back     alignment and domain information
>gnl|CDD|130401 TIGR01334, modD, putative molybdenum utilization protein ModD Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 216
PLN02716 308 nicotinate-nucleotide diphosphorylase (carboxylati 100.0
PRK06106 281 nicotinate-nucleotide pyrophosphorylase; Provision 100.0
COG0157 280 NadC Nicotinate-nucleotide pyrophosphorylase [Coen 100.0
PRK07428 288 nicotinate-nucleotide pyrophosphorylase; Provision 100.0
PRK06543 281 nicotinate-nucleotide pyrophosphorylase; Provision 100.0
PRK06978 294 nicotinate-nucleotide pyrophosphorylase; Provision 100.0
PRK06559 290 nicotinate-nucleotide pyrophosphorylase; Provision 100.0
PRK08072 277 nicotinate-nucleotide pyrophosphorylase; Provision 100.0
PRK06096 284 molybdenum transport protein ModD; Provisional 100.0
TIGR01334 277 modD putative molybdenum utilization protein ModD. 100.0
PRK05742 277 nicotinate-nucleotide pyrophosphorylase; Provision 100.0
PRK07896 289 nicotinate-nucleotide pyrophosphorylase; Provision 100.0
cd01572 268 QPRTase Quinolinate phosphoribosyl transferase (QA 100.0
PRK09016 296 quinolinate phosphoribosyltransferase; Validated 99.98
cd01573 272 modD_like ModD; Quinolinate phosphoribosyl transfe 99.98
PRK08385 278 nicotinate-nucleotide pyrophosphorylase; Provision 99.98
TIGR00078 265 nadC nicotinate-nucleotide pyrophosphorylase. Syno 99.97
PRK05848 273 nicotinate-nucleotide pyrophosphorylase; Provision 99.97
cd01568 269 QPRTase_NadC Quinolinate phosphoribosyl transferas 99.97
PF0274988 QRPTase_N: Quinolinate phosphoribosyl transferase, 99.96
KOG3008 300 consensus Quinolinate phosphoribosyl transferase [ 99.95
PRK08662 343 nicotinate phosphoribosyltransferase; Reviewed 99.9
cd01571 302 NAPRTase_B Nicotinate phosphoribosyltransferase (N 99.82
cd00516 281 PRTase_typeII Phosphoribosyltransferase (PRTase) t 99.81
PRK07188 352 nicotinate phosphoribosyltransferase; Provisional 99.78
PRK09243 464 nicotinate phosphoribosyltransferase; Validated 98.68
cd01570 327 NAPRTase_A Nicotinate phosphoribosyltransferase (N 98.67
cd01567 343 NAPRTase_PncB Nicotinate phosphoribosyltransferase 98.18
PRK12484 443 nicotinate phosphoribosyltransferase; Provisional 97.72
TIGR01513 443 NAPRTase_put putative nicotinate phosphoribosyltra 97.68
COG1488 405 PncB Nicotinic acid phosphoribosyltransferase [Coe 97.37
PRK09198 463 putative nicotinate phosphoribosyltransferase; Pro 96.91
cd01569 407 PBEF_like pre-B-cell colony-enhancing factor (PBEF 96.64
PHA02594 470 nadV nicotinamide phosphoribosyl transferase; Prov 96.36
PLN02885 545 nicotinate phosphoribosyltransferase 95.88
PF1353350 Biotin_lipoyl_2: Biotin-lipoyl like 93.68
PF0036474 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: 90.43
PF0783175 PYNP_C: Pyrimidine nucleoside phosphorylase C-term 89.95
PRK0588971 putative acetyl-CoA carboxylase biotin carboxyl ca 89.8
PRK0674883 hypothetical protein; Validated 89.46
cd01401 377 PncB_like Nicotinate phosphoribosyltransferase (NA 84.95
PRK05321 400 nicotinate phosphoribosyltransferase; Provisional 84.94
PRK0822570 acetyl-CoA carboxylase biotin carboxyl carrier pro 84.6
PRK14875 371 acetoin dehydrogenase E2 subunit dihydrolipoyllysi 84.48
cd0685067 biotinyl_domain The biotinyl-domain or biotin carb 83.21
COG0508 404 AceF Pyruvate/2-oxoglutarate dehydrogenase complex 82.83
PRK05820440 deoA thymidine phosphorylase; Reviewed 82.72
PF10011371 DUF2254: Predicted membrane protein (DUF2254); Int 82.68
PRK06078434 pyrimidine-nucleoside phosphorylase; Reviewed 81.97
TIGR02644405 Y_phosphoryl pyrimidine-nucleoside phosphorylase. 81.86
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating) Back     alignment and domain information 
Probab=100.00  E-value=1.8e-34  Score=261.72  Aligned_cols=127  Identities=75%  Similarity=1.146  Sum_probs=120.0

Q ss_pred             cCccCCCCCChhhHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcC
Q 027948           89 SPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLK  168 (216)
Q Consensus        89 ~~~~~~p~~p~~~i~~~I~~aL~EDig~~GDlTT~ali~~~~~~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~  168 (216)
                      .|...++.+|...+++.|++||+||+|.+||+||.++++++..+++++++||+||+||++++.++|+.+|++++++|+++
T Consensus         6 ~~~~~~~~~~~~~~~~~i~~~L~ED~~~~gDlTt~~~~~~~~~~~a~i~ake~gvlaG~~~a~~vf~~l~~~~~v~~~~~   85 (308)
T PLN02716          6 AMAIPPPSHPTYDIEAVIKLALAEDAGDRGDVTCLATIPGDMEAEATFLAKADGVLAGIALADMVFEEVDPSLKVEWAAI   85 (308)
T ss_pred             ccccccccCChHHHHHHHHHHHHHhCCCCCCCCcccccCCCCeEEEEEEeCCCEEEECHHHHHHHHHHcCCCeEEEEEeC
Confidence            35566777887789999999999999844999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeecCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHhhhcc
Q 027948          169 DGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFVF  215 (216)
Q Consensus       169 DGd~V~~G~vIl~I~G~A~~LL~aERvaLNfLqrlSGIAT~Trr~V~  215 (216)
                      ||+.|++|++|++++|++++||++||++||||||||||||+|++||.
T Consensus        86 dG~~v~~G~~i~~v~G~a~~il~~ER~aLN~L~~~SGIAT~T~~~V~  132 (308)
T PLN02716         86 DGDFVHKGLKFGKVTGPAHSILVAERVVLNFMQRMSGIATLTKAMAD  132 (308)
T ss_pred             CCCEecCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999984

>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism] Back     alignment and domain information
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>PRK06096 molybdenum transport protein ModD; Provisional Back     alignment and domain information
>TIGR01334 modD putative molybdenum utilization protein ModD Back     alignment and domain information
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes Back     alignment and domain information
>PRK09016 quinolinate phosphoribosyltransferase; Validated Back     alignment and domain information
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport Back     alignment and domain information
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase Back     alignment and domain information
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes Back     alignment and domain information
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 Back     alignment and domain information
>KOG3008 consensus Quinolinate phosphoribosyl transferase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed Back     alignment and domain information
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B Back     alignment and domain information
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD Back     alignment and domain information
>PRK07188 nicotinate phosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK09243 nicotinate phosphoribosyltransferase; Validated Back     alignment and domain information
>cd01570 NAPRTase_A Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A Back     alignment and domain information
>cd01567 NAPRTase_PncB Nicotinate phosphoribosyltransferase (NAPRTase) family Back     alignment and domain information
>PRK12484 nicotinate phosphoribosyltransferase; Provisional Back     alignment and domain information
>TIGR01513 NAPRTase_put putative nicotinate phosphoribosyltransferase Back     alignment and domain information
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism] Back     alignment and domain information
>PRK09198 putative nicotinate phosphoribosyltransferase; Provisional Back     alignment and domain information
>cd01569 PBEF_like pre-B-cell colony-enhancing factor (PBEF)-like Back     alignment and domain information
>PHA02594 nadV nicotinamide phosphoribosyl transferase; Provisional Back     alignment and domain information
>PLN02885 nicotinate phosphoribosyltransferase Back     alignment and domain information
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like Back     alignment and domain information
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid Back     alignment and domain information
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ] Back     alignment and domain information
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional Back     alignment and domain information
>PRK06748 hypothetical protein; Validated Back     alignment and domain information
>cd01401 PncB_like Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB Back     alignment and domain information
>PRK05321 nicotinate phosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Back     alignment and domain information
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional Back     alignment and domain information
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase Back     alignment and domain information
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion] Back     alignment and domain information
>PRK05820 deoA thymidine phosphorylase; Reviewed Back     alignment and domain information
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins Back     alignment and domain information
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed Back     alignment and domain information
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query216
1x1o_A 286 Crystal Structure Of Project Id Tt0268 From Thermus 3e-17
3gnn_A 298 Crystal Structure Of Nicotinate-Nucleotide Pyrophos 3e-12
3l0g_A 300 Crystal Structure Of Nicotinate-Nucleotide Pyrophos 3e-12
3tqv_A 287 Structure Of The Nicotinate-Nucleotide Pyrophosphor 3e-11
1qap_A 296 Quinolinic Acid Phosphoribosyltransferase With Boun 5e-11
3paj_A 320 2.00 Angstrom Resolution Crystal Structure Of A Qui 5e-09
3c2r_A 295 Crystal Structure Of The Quinolinate Phosphoribosyl 6e-09
3c2e_A 294 Crystal Structure At 1.9a Of The Apo Quinolinate Ph 6e-09
1qpr_A 284 Quinolinate Phosphoribosyltransferase (Qaprtase) Fr 4e-08
1o4u_A 285 Crystal Structure Of A Nicotinate Nucleotide Pyroph 8e-06
3lar_A 305 Crystal Structure Of Human Quinolinate Phosphoribos 8e-06
2jbm_A 299 Qprtase Structure From Human Length = 299 9e-06
>pdb|1X1O|A Chain A, Crystal Structure Of Project Id Tt0268 From Thermus Thermophilus Hb8 Length = 286 Back     alignment and structure 
Iteration: 1

 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Query: 110 LAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKD 169
           L ED G +GD+T +  +P D+E EA  LAKE G++AG+ +AE +F   DP       + +
Sbjct: 22  LREDLG-QGDLTSLLVVPEDLEGEAVILAKEGGVLAGLWVAERVFALADPRTAFTPLVAE 80
Query: 170 GDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFV 214
           G  V +G +  +V G    I+  ER+ LN +QR+SGIATLTR +V
Sbjct: 81  GARVAEGTEVARVRGPLRGILAGERLALNLLQRLSGIATLTRAYV 125
>pdb|3GNN|A Chain A, Crystal Structure Of Nicotinate-Nucleotide Pyrophosphorylase From Burkholderi Pseudomallei Length = 298 Back     alignment and structure
>pdb|3L0G|A Chain A, Crystal Structure Of Nicotinate-Nucleotide Pyrophosphorylase From Ehrlichia Chaffeensis At 2.05a Resolution Length = 300 Back     alignment and structure
>pdb|3TQV|A Chain A, Structure Of The Nicotinate-Nucleotide Pyrophosphorylase From Francisella Tularensis. Length = 287 Back     alignment and structure
>pdb|1QAP|A Chain A, Quinolinic Acid Phosphoribosyltransferase With Bound Quinolinic Acid Length = 296 Back     alignment and structure
>pdb|3PAJ|A Chain A, 2.00 Angstrom Resolution Crystal Structure Of A Quinolinate Phosphoribosyltransferase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 Length = 320 Back     alignment and structure
>pdb|3C2R|A Chain A, Crystal Structure Of The Quinolinate Phosphoribosyl Transferase (Bna6) From Sachharomyces Cerevisiae Complexed With The Inhibitor Phthalate Length = 295 Back     alignment and structure
>pdb|3C2E|A Chain A, Crystal Structure At 1.9a Of The Apo Quinolinate Phosphoribosyl Transferase (Bna6) From Saccharomyces Cerevisiae Length = 294 Back     alignment and structure
>pdb|1QPR|A Chain A, Quinolinate Phosphoribosyltransferase (Qaprtase) From Mycobacterium Tuberculosis In Complex With Phthalate And Prpcp Length = 284 Back     alignment and structure
>pdb|1O4U|A Chain A, Crystal Structure Of A Nicotinate Nucleotide Pyrophosphorylase (Tm1645) From Thermotoga Maritima At 2.50 A Resolution Length = 285 Back     alignment and structure
>pdb|3LAR|A Chain A, Crystal Structure Of Human Quinolinate Phosphoribosyltransferase Length = 305 Back     alignment and structure
>pdb|2JBM|A Chain A, Qprtase Structure From Human Length = 299 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query216
1x1o_A 286 Nicotinate-nucleotide pyrophosphorylase; transfera 3e-48
3l0g_A 300 Nicotinate-nucleotide pyrophosphorylase; ssgcid, N 9e-48
3tqv_A 287 Nicotinate-nucleotide pyrophosphorylase; glycosylt 1e-47
3gnn_A 298 Nicotinate-nucleotide pyrophosphorylase; decode bi 5e-47
1qpo_A 284 Quinolinate acid phosphoribosyl transferase; type 8e-47
1qap_A 296 Quinolinic acid phosphoribosyltransferase; glycosy 1e-44
3paj_A 320 Nicotinate-nucleotide pyrophosphorylase, carboxyl; 3e-44
2b7n_A 273 Probable nicotinate-nucleotide pyrophosphorylase; 4e-43
2jbm_A 299 Nicotinate-nucleotide pyrophosphorylase; NAD, enzy 3e-40
1o4u_A 285 Type II quinolic acid phosphoribosyltransferase; s 5e-40
3c2e_A 294 Nicotinate-nucleotide pyrophosphorylase; qprtase, 2e-39
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} Length = 286 Back     alignment and structure
 Score =  158 bits (403), Expect = 3e-48
 Identities = 46/120 (38%), Positives = 69/120 (57%), Gaps = 1/120 (0%)

Query: 95  PSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIF 154
            +     L+  ++  L ED G  GD+T +  +P D+E EA  LAKE G++AG+ +AE +F
Sbjct: 7   EALWQGGLEEALRAWLREDLGQ-GDLTSLLVVPEDLEGEAVILAKEGGVLAGLWVAERVF 65

Query: 155 HEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFV 214
              DP       + +G  V +G +  +V G    I+  ER+ LN +QR+SGIATLTR +V
Sbjct: 66  ALADPRTAFTPLVAEGARVAEGTEVARVRGPLRGILAGERLALNLLQRLSGIATLTRAYV 125
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis} Length = 300 Back     alignment and structure
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp} Length = 287 Back     alignment and structure
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei} Length = 298 Back     alignment and structure
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A* Length = 284 Back     alignment and structure
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1 Length = 296 Back     alignment and structure
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor} Length = 320 Back     alignment and structure
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A* Length = 273 Back     alignment and structure
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A Length = 299 Back     alignment and structure
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1 Length = 285 Back     alignment and structure
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A* Length = 294 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query216
3l0g_A 300 Nicotinate-nucleotide pyrophosphorylase; ssgcid, N 100.0
1x1o_A 286 Nicotinate-nucleotide pyrophosphorylase; transfera 100.0
3tqv_A 287 Nicotinate-nucleotide pyrophosphorylase; glycosylt 100.0
1o4u_A 285 Type II quinolic acid phosphoribosyltransferase; s 99.97
1qpo_A 284 Quinolinate acid phosphoribosyl transferase; type 99.97
3gnn_A 298 Nicotinate-nucleotide pyrophosphorylase; decode bi 99.97
3paj_A 320 Nicotinate-nucleotide pyrophosphorylase, carboxyl; 99.97
2b7n_A 273 Probable nicotinate-nucleotide pyrophosphorylase; 99.97
1qap_A 296 Quinolinic acid phosphoribosyltransferase; glycosy 99.97
2jbm_A 299 Nicotinate-nucleotide pyrophosphorylase; NAD, enzy 99.96
3c2e_A 294 Nicotinate-nucleotide pyrophosphorylase; qprtase, 99.96
2i14_A 395 Nicotinate-nucleotide pyrophosphorylase; ligand bi 99.76
2i1o_A 398 Nicotinate phosphoribosyltransferase; ZIN ION, zin 99.76
2f7f_A 494 Nicotinate phosphoribosyltransferase, putative; st 99.36
3os4_A 407 Naprtase, nicotinate phosphoribosyltransferase; st 96.54
1yir_A 408 Naprtase 2, nicotinate phosphoribosyltransferase 2 95.7
3dhf_A 484 Nicotinamide phosphoribosyltransferase; NMPRTASE, 95.57
1vlp_A 441 Naprtase, nicotinate phosphoribosyltransferase; st 94.64
2im5_A 394 Nicotinate phosphoribosyltransferase; structural g 93.85
4hl7_A 446 Naprtase, nicotinate phosphoribosyltransferase; st 92.89
3crk_C87 Dihydrolipoyllysine-residue acetyltransferase COM 88.91
1z6h_A72 Biotin/lipoyl attachment protein; solution structu 88.59
1iyu_A79 E2P, dihydrolipoamide acetyltransferase component 88.39
2dnc_A98 Pyruvate dehydrogenase protein X component; lipoic 87.58
2d5d_A74 Methylmalonyl-COA decarboxylase gamma chain; bioti 87.39
1qjo_A80 Dihydrolipoamide acetyltransferase; lipoyl domain, 86.67
1k8m_A93 E2 component of branched-chain ahpha-ketoacid dehy 85.5
2dne_A108 Dihydrolipoyllysine-residue acetyltransferase comp 85.37
1ghj_A79 E2, E2, the dihydrolipoamide succinyltransferase c 85.31
2dsj_A423 Pyrimidine-nucleoside (thymidine) phosphorylase; p 84.86
1dcz_A77 Transcarboxylase 1.3S subunit; antiparallel beta s 84.82
2dn8_A100 Acetyl-COA carboxylase 2; biotin required enzyme, 84.65
1bdo_A80 Acetyl-COA carboxylase; BCCPSC, carboxyl transfera 84.31
1gjx_A81 Pyruvate dehydrogenase; oxidoreductase, lipoyl dom 84.12
2kcc_A84 Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, 84.03
1ybe_A 449 Naprtase, nicotinate phosphoribosyltransferase; st 83.41
2l5t_A77 Lipoamide acyltransferase; E2 lipoyl domain; NMR { 82.86
1y8o_B128 Dihydrolipoyllysine-residue acetyltransferase COM 82.75
1brw_A433 PYNP, protein (pyrimidine nucleoside phosphorylase 82.5
2ejm_A99 Methylcrotonoyl-COA carboxylase subunit alpha; bio 82.14
2k32_A116 A; NMR {Campylobacter jejuni} PDB: 2k33_A* 82.13
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis} Back     alignment and structure
Probab=100.00  E-value=1e-34  Score=261.32  Aligned_cols=123  Identities=32%  Similarity=0.431  Sum_probs=111.1

Q ss_pred             cCCCCCChhhHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCC
Q 027948           92 IKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGD  171 (216)
Q Consensus        92 ~~~p~~p~~~i~~~I~~aL~EDig~~GDlTT~ali~~~~~~~A~IiAKEdGVlAGl~~a~~If~~lg~~leve~~v~DGd  171 (216)
                      -+||.+....+++.|+.||+||+|++||+||..+++.+. ++|++++||+||+||++++.++|+.+|++++++|+++||+
T Consensus        16 ~~~~~~~~~~~~~~i~~~L~ED~g~~gD~tt~~l~~~~~-~~a~i~are~gVlaG~~~a~~vf~~l~~~~~v~~~~~dG~   94 (300)
T 3l0g_A           16 TQGPGSMKISFSEIIHNALKEDLGDKGDITTNSILINEK-VNFAINTRENLVVCGIPILEEVFNMNKEHVKYEIHKKDGD   94 (300)
T ss_dssp             --------CCCHHHHHHHHHHHHTTTCCHHHHHHCSSCE-EEEEEEESSCEECCCHHHHHHHHHHTTTTEEEEECCCTTC
T ss_pred             CCCCcchHHHHHHHHHHHHHhhCCCCCCcchhhcccCCc-EEEEEEECCCeEEEcHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence            468888889999999999999999439999998888888 9999999999999999999999999999999999999999


Q ss_pred             eeecCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHhhhcc
Q 027948          172 HVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRVFVF  215 (216)
Q Consensus       172 ~V~~G~vIl~I~G~A~~LL~aERvaLNfLqrlSGIAT~Trr~V~  215 (216)
                      .|++|++|++++|++++||++||++||||||+|||||+|++||.
T Consensus        95 ~v~~g~~v~~i~G~a~~ll~~ER~aLN~L~~~SGIAT~T~~~v~  138 (300)
T 3l0g_A           95 ITGKNSTLVSGEALAIYLLPIERVILNFIQHASGIASITRQFVD  138 (300)
T ss_dssp             EECSSCEEEEEEEEHHHHGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeeCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999984
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} Back     alignment and structure
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp} Back     alignment and structure
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1 Back     alignment and structure
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A* Back     alignment and structure
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei} Back     alignment and structure
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor} Back     alignment and structure
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A* Back     alignment and structure
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1 Back     alignment and structure
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A Back     alignment and structure
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A* Back     alignment and structure
>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1 Back     alignment and structure
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A Back     alignment and structure
>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural genomics, PSI; 2.00A {Enterococcus faecalis} SCOP: c.1.17.1 d.41.2.1 Back     alignment and structure
>3os4_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel; HET: MSE; 1.60A {Yersinia pestis} Back     alignment and structure
>1yir_A Naprtase 2, nicotinate phosphoribosyltransferase 2; structural genomics, protein structure initiative, hypothetical protein, NYSGXRC, PSI; 2.10A {Pseudomonas aeruginosa} SCOP: c.1.17.2 d.41.2.2 Back     alignment and structure
>3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE, visfatin, beryllium fluoride, nicotinamide D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A* 2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A 2g95_A 2g96_A* 2g97_A* 3g8e_A* Back     alignment and structure
>1vlp_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, joint center for structural genomics; HET: MSE MES; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.17.2 d.41.2.2 Back     alignment and structure
>2im5_A Nicotinate phosphoribosyltransferase; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.20A {Porphyromonas gingivalis} Back     alignment and structure
>4hl7_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative; 1.80A {Vibrio cholerae} Back     alignment and structure
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* Back     alignment and structure
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* Back     alignment and structure
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A Back     alignment and structure
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A Back     alignment and structure
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 Back     alignment and structure
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A Back     alignment and structure
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} Back     alignment and structure
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A Back     alignment and structure
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus} Back     alignment and structure
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A Back     alignment and structure
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A Back     alignment and structure
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1 Back     alignment and structure
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Back     alignment and structure
>1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.50A {Agrobacterium tumefaciens} SCOP: c.1.17.2 d.41.2.2 Back     alignment and structure
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} Back     alignment and structure
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A Back     alignment and structure
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 Back     alignment and structure
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 216
d1qapa2122 d.41.2.1 (A:8-129) Quinolinic acid phosphoribosylt 3e-32
d1qpoa2115 d.41.2.1 (A:2-116) Quinolinic acid phosphoribosylt 6e-32
d1o4ua2103 d.41.2.1 (A:1-103) Quinolinic acid phosphoribosylt 2e-21
>d1qapa2 d.41.2.1 (A:8-129) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 122 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like
family: NadC N-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score =  111 bits (278), Expect = 3e-32
 Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 4/110 (3%)

Query: 100 YDLKGVVKLALAEDAG---DRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHE 156
            D+   V  AL ED G   D G+      +P D +  A  + +EDG+  G    E +F +
Sbjct: 13  LDIPAAVAQALREDLGGEVDAGNDITAQLLPADTQAHATVITREDGVFCGKRWVEEVFIQ 72

Query: 157 V-DPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSG 205
           +    +++ W + DGD +H      ++ G A  ++  ER  LNF+Q +SG
Sbjct: 73  LAGDDVRLTWHVDDGDAIHANQTVFELQGPARVLLTGERTALNFVQTLSG 122
>d1qpoa2 d.41.2.1 (A:2-116) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 115 Back     information, alignment and structure
>d1o4ua2 d.41.2.1 (A:1-103) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 103 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query216
d1qpoa2115 Quinolinic acid phosphoribosyltransferase (Nicotin 100.0
d1qapa2122 Quinolinic acid phosphoribosyltransferase (Nicotin 99.97
d1o4ua2103 Quinolinic acid phosphoribosyltransferase (Nicotin 99.96
d1ytda2119 Nicotinate phosphoribosyltransferase Ta1145 {Therm 98.66
d2i14a2110 Nicotinate-nucleotide pyrophosphorylase PF1904 {Py 98.55
d2f7fa2137 Putative nicotinate phosphoribosyltransferase EF26 96.82
d1uoua3105 Thymidine phosphorylase {Human (Homo sapiens) [Tax 94.87
d1brwa3103 Pyrimidine nucleoside phosphorylase {Bacillus stea 94.41
d2tpta3105 Thymidine phosphorylase {Escherichia coli [TaxId: 92.33
d1y8ob1102 Lipoyl domain of dihydrolipoamide acetyltransferas 90.46
d1k8ma_87 Lipoyl domain of the mitochondrial branched-chain 89.76
d1gjxa_81 Lipoyl domain of dihydrolipoamide acetyltransferas 89.42
d1ghja_79 Lipoyl domain of the 2-oxoglutarate dehydrogenase 89.07
d1laba_80 Lipoyl domain of dihydrolipoamide acetyltransferas 89.0
d1dcza_77 Biotin carboxyl carrier domain of transcarboxylase 88.42
d1iyua_79 Lipoyl domain of dihydrolipoamide acetyltransferas 88.22
d1qjoa_80 Lipoyl domain of dihydrolipoamide acetyltransferas 88.18
d1pmra_80 Lipoyl domain of the 2-oxoglutarate dehydrogenase 83.0
>d1qpoa2 d.41.2.1 (A:2-116) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like
family: NadC N-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.7e-34  Score=224.76  Aligned_cols=105  Identities=29%  Similarity=0.487  Sum_probs=100.0

Q ss_pred             hhHHHHHHHHHHhhcCCCC-CcccccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHc--CCCcEEEEEcCCCCeeecC
Q 027948          100 YDLKGVVKLALAEDAGDRG-DVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEV--DPSLKVEWSLKDGDHVHKG  176 (216)
Q Consensus       100 ~~i~~~I~~aL~EDig~~G-DlTT~ali~~~~~~~A~IiAKEdGVlAGl~~a~~If~~l--g~~leve~~v~DGd~V~~G  176 (216)
                      ..+++.|+.||+||+| +| |+||+++++++..++|++++||+||+||+++++++|+++  +++++++|+++||++|+||
T Consensus         8 ~~~~~~i~~aL~EDlg-~g~DiTt~~li~~~~~~~A~i~ake~gVlaG~~~~~~if~~l~~~~~i~~~~~~~DG~~v~~G   86 (115)
T d1qpoa2           8 AAARAAIARGLDEDLR-YGPDVTTLATVPASATTTASLVTREAGVVAGLDVALLTLNEVLGTNGYRVLDRVEDGARVPPG   86 (115)
T ss_dssp             HHHHHHHHHHHHHHHT-TCCCHHHHHHSCTTCEEEEEEEESSCEECCCHHHHHHHHHHHHCTTSEEEEEECCTTCEECTT
T ss_pred             HHHHHHHHHHHHccCC-CCCCcCchhhcCCCCeEEEEEEECCCCceehHHHHHHHHHHhccccccceeeecCCCCEEecc
Confidence            3578999999999999 56 999999999999999999999999999999999999987  6679999999999999999


Q ss_pred             CEEEEEEechhhhHHHHHHHHHHHHHHhH
Q 027948          177 LQFGKVSGRAHSIVIAERVVLNFMQRMSG  205 (216)
Q Consensus       177 ~vIl~I~G~A~~LL~aERvaLNfLqrlSG  205 (216)
                      ++|++++|++++||++||++|||||||||
T Consensus        87 ~~I~~i~G~a~~iL~~ER~~LN~lq~lSG  115 (115)
T d1qpoa2          87 EALMTLEAQTRGLLTAERTMLNLVGHLSG  115 (115)
T ss_dssp             CEEEEEEEEHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeEEEEechHHHHHHHHHHHHHHHHhccC
Confidence            99999999999999999999999999998
>d1qapa2 d.41.2.1 (A:8-129) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1o4ua2 d.41.2.1 (A:1-103) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ytda2 d.41.2.1 (A:1-119) Nicotinate phosphoribosyltransferase Ta1145 {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2i14a2 d.41.2.1 (A:1-110) Nicotinate-nucleotide pyrophosphorylase PF1904 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2f7fa2 d.41.2.1 (A:4-140) Putative nicotinate phosphoribosyltransferase EF2626 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1uoua3 d.41.3.1 (A:374-480) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1brwa3 d.41.3.1 (A:331-433) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2tpta3 d.41.3.1 (A:336-440) Thymidine phosphorylase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Back     information, alignment and structure
>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} Back     information, alignment and structure