Citrus Sinensis ID: 027949

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210------
Protein Sequence
MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIKINQPDQAGGAAQAAQRSACCGS
Secondary Structure (PSIPRED)
cccccccccccccEEEEEEEEccccccHHHHHHHHccccccccccccccEEEEEEEEEEccEEEEEEEEEcccccHHHHHHHHHcccccEEEEEEEcccHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccccccHHHHHHHHHHHcccEEEccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEEEEEEccccccHHHHHHHHHHccccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHHHHHHcccccccEEEEEEEcccHHHHHcHHHHHHHHHHHcccccEEEEEEEccccHHHcccccHHHHHHHHHHHcccEEEccccccccHHHHHHHHHHHHccHHccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
maappararADYDYLIKLLLIgdsgvgksCLLLrfsdgsfttsfITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYdvtdessfNNIRNWIRNIEQHASDNVNKILVgnkadmdeskravptskgqaLADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLadtdsraepqtikinqpdqaggaaQAAQRSACCGS
Flexible Loop (DISEMBL)
maappararADYDYLIKLLLIGDSGVGKSCLLLRFsdgsfttsfittigidfkirtieldgkriklqiwdtagqerFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNkadmdeskravptskgqalaDEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLadtdsraepqtikinqpdqagGAAQAAQRSACCGS
Low Complexity Region (SEG)
MaappararadydyLIKLLLIGDSGVGKSCLLLRfsdgsfttsfittigidfKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIKINQPDqaggaaqaaqRSACCGS
Disordered region (IsUnstruct)
**********DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILV********************LADEYGIKFFETSAKTNLNVEEVFFSIARDIK**************************************
Disordered Region (DISOPRED)
*************YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARD*********************************RSACCG*
Disordered Region (DISEMBL)
********RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKAD**************ALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIKINQ*******************
Disordered Region (DISPRO)
*********ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA**********************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIKINQPDQAGGAAQAAQRSACCGS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	216	2.2.26 [Sep-21-2011]
P28186	216	Ras-related protein RABE1	yes	no	0.953	0.953	0.946	1e-112
O24466	216	Ras-related protein RABE1	yes	no	0.953	0.953	0.936	1e-112
Q39433	215	Ras-related protein RAB1B	N/A	no	0.944	0.948	0.917	1e-106
Q9LZD4	216	Ras-related protein RABE1	no	no	0.986	0.986	0.864	1e-101
Q9SF91	218	Ras-related protein RABE1	no	no	0.990	0.981	0.841	9e-99
P20790	208	Ras-related protein Rab-8	yes	no	0.962	1.0	0.719	3e-84
P20791	203	Ras-related protein Rab-8	no	no	0.939	1.0	0.691	4e-82
P36861	217	GTP-binding protein yptV2	N/A	no	0.981	0.976	0.623	4e-76
P17609	200	GTP-binding protein ypt2	yes	no	0.828	0.895	0.744	2e-74
Q4R5P1	207	Ras-related protein Rab-8	N/A	no	0.865	0.903	0.673	2e-71

>sp|P28186|RAE1C_ARATH Ras-related protein RABE1c OS=Arabidopsis thaliana GN=RABE1C PE=1 SV=1

 Score =  405 bits (1041), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/206 (94%), Positives = 200/206 (97%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD
Sbjct: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130
           TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA
Sbjct: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEP 190
           DMDESKRAVPT+KGQALADEYGIKFFETSAKTNLNVEEVFFSI RDIKQRL+DTDSRAEP
Sbjct: 131 DMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQRLSDTDSRAEP 190

Query: 191 QTIKINQPDQAGGAAQAAQRSACCGS 216
            TIKI+Q DQA GA QA Q+SACCG+
Sbjct: 191 ATIKISQTDQAAGAGQATQKSACCGT 216

Involved in membrane trafficking from the Golgi to the plasma membrane.
Arabidopsis thaliana (taxid: 3702)

>sp|O24466|RAE1A_ARATH Ras-related protein RABE1a OS=Arabidopsis thaliana GN=RABE1A PE=1 SV=1

 Score =  404 bits (1037), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 193/206 (93%), Positives = 200/206 (97%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD
Sbjct: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130
           TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD+VNKILVGNKA
Sbjct: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDSVNKILVGNKA 130

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEP 190
           DMDESKRAVP SKGQALADEYG+KFFETSAKTNLNVEEVFFSIA+DIKQRLADTD+RAEP
Sbjct: 131 DMDESKRAVPKSKGQALADEYGMKFFETSAKTNLNVEEVFFSIAKDIKQRLADTDARAEP 190

Query: 191 QTIKINQPDQAGGAAQAAQRSACCGS 216
           QTIKINQ DQ  G +QA Q+SACCG+
Sbjct: 191 QTIKINQSDQGAGTSQATQKSACCGT 216

Involved in membrane trafficking from the Golgi to the plasma membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39433|RB1BV_BETVU Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1

 Score =  383 bits (984), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/207 (91%), Positives = 196/207 (94%), Gaps = 3/207 (1%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD
Sbjct: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130
           TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA
Sbjct: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEP 190
           DMDESKRAVPT+KGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD+D+R E 
Sbjct: 131 DMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADSDTRQEA 190

Query: 191 Q-TIKINQPDQAGGAAQAAQRSACCGS 216
           Q +I I   DQ+G   QAA +SACCGS
Sbjct: 191 QPSITIKPADQSGN--QAAAKSACCGS 215

Beta vulgaris (taxid: 161934)

>sp|Q9LZD4|RAE1D_ARATH Ras-related protein RABE1d OS=Arabidopsis thaliana GN=RABE1D PE=1 SV=1

 Score =  367 bits (941), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/214 (86%), Positives = 200/214 (93%), Gaps = 1/214 (0%)

Query: 1   MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
           MA  PARAR+DYDYLIKLLLIGDSGVGKSCLLLRFSD +FTTSFITTIGIDFKIRT+ELD
Sbjct: 1   MAVAPARARSDYDYLIKLLLIGDSGVGKSCLLLRFSDDTFTTSFITTIGIDFKIRTVELD 60

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
           GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW++NIEQHASDN
Sbjct: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMKNIEQHASDN 120

Query: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           VNKILVGNKADMDESKRAVPT+KGQALADEYGIKFFETSAKTNLNVE VF SIA+DIKQR
Sbjct: 121 VNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVENVFMSIAKDIKQR 180

Query: 181 LADTDSRAEPQTIKINQPDQAGGAAQAAQRSACC 214
           L +TD++AEPQ IKI + D A  ++  A++SACC
Sbjct: 181 LTETDTKAEPQGIKITKQDTAASSS-TAEKSACC 213

Involved in membrane trafficking from the Golgi to the plasma membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SF91|RAE1E_ARATH Ras-related protein RABE1e OS=Arabidopsis thaliana GN=RABE1E PE=1 SV=1

 Score =  359 bits (921), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 181/215 (84%), Positives = 198/215 (92%), Gaps = 1/215 (0%)

Query: 1   MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
           MA  PARAR+DYDYLIKLLLIGDSGVGKSCLLLRFSD +FTTSFITTIGIDFKIRT+ELD
Sbjct: 1   MAVAPARARSDYDYLIKLLLIGDSGVGKSCLLLRFSDDTFTTSFITTIGIDFKIRTVELD 60

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
           GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW++NIEQHASD+
Sbjct: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMKNIEQHASDS 120

Query: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN NVE+VF SIA+DIKQR
Sbjct: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNQNVEQVFLSIAKDIKQR 180

Query: 181 LADTDSRAEPQTIKINQPD-QAGGAAQAAQRSACC 214
           L ++D++AEPQ IKI + D     ++   ++SACC
Sbjct: 181 LTESDTKAEPQGIKITKQDANKASSSSTNEKSACC 215

Involved in membrane trafficking from the Golgi to the plasma membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|P20790|RAB8A_DICDI Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1

 Score =  311 bits (796), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 154/214 (71%), Positives = 177/214 (82%), Gaps = 6/214 (2%)

Query: 1   MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
           M +P     A YDYLIKLLLIGDSGVGKSCLLLRFS+ SFT SFITTIGIDFKIRTIEL+
Sbjct: 1   MTSPATNKSAAYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELE 60

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
           GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE SF NIRNWIRNIEQHA+D+
Sbjct: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDS 120

Query: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           VNK+L+GNK DM E K+ V +S+G++LADEYGIKF ETSAK ++NVEE F S+A+DIK+R
Sbjct: 121 VNKMLIGNKCDMAE-KKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLAKDIKKR 179

Query: 181 LADTDSRAEPQTIKINQPDQAGGAAQAAQRSACC 214
           + DT +  +PQ +   QP    G A   ++ ACC
Sbjct: 180 MIDTPNE-QPQVV---QPGTNLG-ANNNKKKACC 208

Protein transport. Probably involved in vesicular traffic.

Dictyostelium discoideum (taxid: 44689)

>sp|P20791|RAB8B_DICDI Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1

 Score =  304 bits (778), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 148/214 (69%), Positives = 170/214 (79%), Gaps = 11/214 (5%)

Query: 1   MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
           M +P     A YD+L+KLLLIGDSGVGKSCLLLRFSDGSFT SFI TIGIDFKIRTIEL+
Sbjct: 1   MTSPATNKPAAYDFLVKLLLIGDSGVGKSCLLLRFSDGSFTPSFIATIGIDFKIRTIELE 60

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
           GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE SF +IRNWIRNIEQHASD+
Sbjct: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNWIRNIEQHASDS 120

Query: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           VNK+L+GNK DM E K+ V +S+G++LADEYGIKF ETSAK ++NVEE F  +A+DIK+R
Sbjct: 121 VNKMLIGNKCDMTE-KKVVDSSRGKSLADEYGIKFLETSAKNSVNVEEAFIGLAKDIKKR 179

Query: 181 LADTDSRAEPQTIKINQPDQAGGAAQAAQRSACC 214
           + DT           N PD         +++ CC
Sbjct: 180 MIDTP----------NDPDHTICITPNNKKNTCC 203

Protein transport. Probably involved in vesicular traffic.

Dictyostelium discoideum (taxid: 44689)

>sp|P36861|YPTV2_VOLCA GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1

 Score =  284 bits (726), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 136/218 (62%), Positives = 168/218 (77%), Gaps = 6/218 (2%)

Query: 1   MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
           MA  P R   DYD LIKLLL+GDSGVGKSCLLLRF+D  FT+SFITTIGIDFKI+ +++D
Sbjct: 1   MARIPGRP--DYDALIKLLLVGDSGVGKSCLLLRFTDDMFTSSFITTIGIDFKIKKVDVD 58

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
           GK +KLQIWDTAGQERFRTIT+AYYRGA GI+LVYD+TDE+SFNN+RNW+RNIEQHASDN
Sbjct: 59  GKLVKLQIWDTAGQERFRTITSAYYRGAQGIILVYDITDEASFNNVRNWMRNIEQHASDN 118

Query: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           VNKILVGNK D+ E KR V  ++GQALADE+G +F+ETSAK N++VEE F ++A+D+  R
Sbjct: 119 VNKILVGNKLDLAEDKRVVSIARGQALADEFGFRFYETSAKDNVHVEEAFIAVAKDVLAR 178

Query: 181 LADTDSRAEPQTIKINQPDQ----AGGAAQAAQRSACC 214
           +    +  +    +     Q      G+   AQ  +CC
Sbjct: 179 MEGEHANQQLLQQQQLSAAQPVRLTSGSPSPAQGKSCC 216

Protein transport. Probably involved in vesicular traffic.

Volvox carteri (taxid: 3067)

>sp|P17609|YPT2_SCHPO GTP-binding protein ypt2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ypt2 PE=3 SV=1

 Score =  278 bits (710), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 134/180 (74%), Positives = 154/180 (85%), Gaps = 1/180 (0%)

Query: 12  YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
           YDYLIKLLLIGDSGVGKSCLLLRFS+ SFT SFITTIGIDFKIRTIELDGKRIKLQIWDT
Sbjct: 6   YDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDT 65

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKAD 131
           AGQERFRTITTAYYRGAMGILL+YDVTD+ SF+N+R W  N+EQHAS+NV KIL+GNK D
Sbjct: 66  AGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCD 125

Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQ 191
             E +R V   +GQALADE G+KF E SAKTN+NV+E FF++AR+IK++  D ++    Q
Sbjct: 126 C-EDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREIKKQKIDAENEFSNQ 184

Protein transport. Probably involved in vesicular traffic.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q4R5P1|RAB8A_MACFA Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2 SV=1

 Score =  268 bits (685), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 130/193 (67%), Positives = 159/193 (82%), Gaps = 6/193 (3%)

Query: 12  YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
           YDYL KLLLIGDSGVGK+C+L RFS+ +F ++FI+TIGIDFKIRTIELDGKRIKLQIWDT
Sbjct: 5   YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 64

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKAD 131
           AGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK D
Sbjct: 65  AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 124

Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIK----QRLADTDSR 187
           +++ KR V   +G+ LA +YGIKF ETSAK N+NVE  FF++ARDIK    ++L     +
Sbjct: 125 VND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQ 183

Query: 188 AEPQTIKINQPDQ 200
              Q +KI  PDQ
Sbjct: 184 GSNQGVKIT-PDQ 195

May be involved in vesicular trafficking and neurotransmitter release. Together with RAB11A, RAB3IP, the exocyst complex, PARD3, PRKCI, ANXA2, CDC42 and DNMBP promotes transcytosis of PODXL to the apical membrane initiation sites (AMIS), apical surface formation and lumenogenesis. Together with MYO5B and RAB11A participates in epithelial cell polarization.

Macaca fascicularis (taxid: 9541)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
449448661	216	PREDICTED: ras-related protein RABE1a-li	1.0	1.0	0.986	1e-121
302595187	216	Rab1 [Hevea brasiliensis]	1.0	1.0	0.981	1e-121
255587494	216	protein with unknown function [Ricinus c	1.0	1.0	0.981	1e-121
871510	216	small GTP-binding protein [Pisum sativum	1.0	1.0	0.939	1e-118
357440493	216	Ras-like protein [Medicago truncatula] g	1.0	1.0	0.935	1e-117
357440489	216	Ras-like protein [Medicago truncatula] g	1.0	1.0	0.930	1e-117
2808638	216	small GTP-binding protein [Daucus carota	1.0	1.0	0.921	1e-115
18447921	216	ras-related protein RAB8-5 [Nicotiana ta	1.0	1.0	0.953	1e-113
18447917	216	ras-related protein RAB8-3 [Nicotiana ta	0.953	0.953	0.951	1e-113
327505559	216	Rab3 [Hevea brasiliensis]	0.953	0.953	0.961	1e-112

>gi|449448661|ref|XP_004142084.1| PREDICTED: ras-related protein RABE1a-like [Cucumis sativus] gi|449502574|ref|XP_004161681.1| PREDICTED: ras-related protein RABE1a-like [Cucumis sativus]

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 213/216 (98%), Positives = 214/216 (99%)

Query: 1   MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
           MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD
Sbjct: 1   MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
           GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN
Sbjct: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120

Query: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR
Sbjct: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180

Query: 181 LADTDSRAEPQTIKINQPDQAGGAAQAAQRSACCGS 216
           LADTDS+AEPQTIKINQPDQ  GAAQAAQRSACCGS
Sbjct: 181 LADTDSKAEPQTIKINQPDQGAGAAQAAQRSACCGS 216

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302595187|gb|ADL59582.1| Rab1 [Hevea brasiliensis]

 Score =  439 bits (1128), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 212/216 (98%), Positives = 215/216 (99%)

Query: 1   MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
           MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD
Sbjct: 1   MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
           GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN
Sbjct: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120

Query: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           VNKILVGNKADMDESKRAVPTSKGQALAD+YGIKFFETSAKTNLNVEEVFFSIARDIKQR
Sbjct: 121 VNKILVGNKADMDESKRAVPTSKGQALADKYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180

Query: 181 LADTDSRAEPQTIKINQPDQAGGAAQAAQRSACCGS 216
           LADTDS+AEPQTIKINQPDQAGGA QAAQ+SACCGS
Sbjct: 181 LADTDSKAEPQTIKINQPDQAGGANQAAQKSACCGS 216

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587494|ref|XP_002534292.1| protein with unknown function [Ricinus communis] gi|223525564|gb|EEF28091.1| protein with unknown function [Ricinus communis]

 Score =  438 bits (1126), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 212/216 (98%), Positives = 214/216 (99%)

Query: 1   MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
           MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD
Sbjct: 1   MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
           GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN
Sbjct: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120

Query: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR
Sbjct: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180

Query: 181 LADTDSRAEPQTIKINQPDQAGGAAQAAQRSACCGS 216
           LADTDSRAEPQTIKINQPDQAG A+QAA +SACCGS
Sbjct: 181 LADTDSRAEPQTIKINQPDQAGSASQAAPKSACCGS 216

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|871510|emb|CAA90080.1| small GTP-binding protein [Pisum sativum]

 Score =  428 bits (1100), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 203/216 (93%), Positives = 212/216 (98%)

Query: 1   MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
           MAAPPARAR+DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD
Sbjct: 1   MAAPPARARSDYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
           GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI+NWIRNIEQHASDN
Sbjct: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIKNWIRNIEQHASDN 120

Query: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN+NV+EVFFSIARDIKQR
Sbjct: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVDEVFFSIARDIKQR 180

Query: 181 LADTDSRAEPQTIKINQPDQAGGAAQAAQRSACCGS 216
           LA+TDS+ EPQT+KINQPDQ  G+AQA Q+SACCGS
Sbjct: 181 LAETDSKTEPQTLKINQPDQGAGSAQATQKSACCGS 216

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357440493|ref|XP_003590524.1| Ras-like protein [Medicago truncatula] gi|355479572|gb|AES60775.1| Ras-like protein [Medicago truncatula]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 202/216 (93%), Positives = 212/216 (98%)

Query: 1   MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
           MAAPPARAR+DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD
Sbjct: 1   MAAPPARARSDYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
           GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI+NWIRNIEQHASDN
Sbjct: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIKNWIRNIEQHASDN 120

Query: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN+NVEEVFFSIARDIKQR
Sbjct: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVEEVFFSIARDIKQR 180

Query: 181 LADTDSRAEPQTIKINQPDQAGGAAQAAQRSACCGS 216
           LA++DS+ EPQT+KINQPDQ  G+AQA+Q S+CCGS
Sbjct: 181 LAESDSKTEPQTLKINQPDQGAGSAQASQTSSCCGS 216

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357440489|ref|XP_003590522.1| Ras-like protein [Medicago truncatula] gi|355479570|gb|AES60773.1| Ras-like protein [Medicago truncatula] gi|388512621|gb|AFK44372.1| unknown [Medicago truncatula]

 Score =  424 bits (1091), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 201/216 (93%), Positives = 212/216 (98%)

Query: 1   MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
           MAAPPARAR+DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD
Sbjct: 1   MAAPPARARSDYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
           GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI+NWIRNIEQHASDN
Sbjct: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIKNWIRNIEQHASDN 120

Query: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN+NV+EVFFSIARDIKQR
Sbjct: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVDEVFFSIARDIKQR 180

Query: 181 LADTDSRAEPQTIKINQPDQAGGAAQAAQRSACCGS 216
           LA++DS+ EPQT+KINQPDQ  G+AQA+Q S+CCGS
Sbjct: 181 LAESDSKTEPQTLKINQPDQGAGSAQASQTSSCCGS 216

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2808638|emb|CAA04701.1| small GTP-binding protein [Daucus carota]

 Score =  419 bits (1076), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 199/216 (92%), Positives = 208/216 (96%)

Query: 1   MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
           MAAPPAR RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIE+D
Sbjct: 1   MAAPPARPRADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEMD 60

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
           GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN
Sbjct: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120

Query: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFE SAKTN+NVEEVFFSIA+DIKQR
Sbjct: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFEASAKTNMNVEEVFFSIAKDIKQR 180

Query: 181 LADTDSRAEPQTIKINQPDQAGGAAQAAQRSACCGS 216
           LA+TDS+ EPQTIKINQ +Q  G + A+Q+SACCGS
Sbjct: 181 LAETDSKTEPQTIKINQQEQGAGTSAASQKSACCGS 216

Source: Daucus carota

Species: Daucus carota

Genus: Daucus

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18447921|dbj|BAB84326.1| ras-related protein RAB8-5 [Nicotiana tabacum]

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/216 (95%), Positives = 213/216 (98%)

Query: 1   MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
           MA PPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD
Sbjct: 1   MATPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
            KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN
Sbjct: 61  SKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120

Query: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN+NVEEVFFSIARDIKQR
Sbjct: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVEEVFFSIARDIKQR 180

Query: 181 LADTDSRAEPQTIKINQPDQAGGAAQAAQRSACCGS 216
           LA++DS+AEPQTI+INQPDQA GAAQ+AQ+SACCGS
Sbjct: 181 LAESDSKAEPQTIRINQPDQAAGAAQSAQKSACCGS 216

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18447917|dbj|BAB84324.1| ras-related protein RAB8-3 [Nicotiana tabacum]

 Score =  412 bits (1058), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 196/206 (95%), Positives = 204/206 (99%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD
Sbjct: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130
           TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA
Sbjct: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEP 190
           DMDESKRAVPTSKGQALADEYGIKFFETSAKTN+NVEEVFFSIARDIKQRLA++DS+AEP
Sbjct: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVEEVFFSIARDIKQRLAESDSKAEP 190

Query: 191 QTIKINQPDQAGGAAQAAQRSACCGS 216
           QTI+INQPDQA GA+Q+ Q+SACCGS
Sbjct: 191 QTIRINQPDQAAGASQSVQKSACCGS 216

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|327505559|gb|AEA92307.1| Rab3 [Hevea brasiliensis]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 198/206 (96%), Positives = 202/206 (98%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD
Sbjct: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130
           TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA
Sbjct: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEP 190
           DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIK+RLA+TDS+AEP
Sbjct: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKKRLAETDSKAEP 190

Query: 191 QTIKINQPDQAGGAAQAAQRSACCGS 216
           QTIKINQPDQA    QAAQ+SACCGS
Sbjct: 191 QTIKINQPDQAASGGQAAQKSACCGS 216

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
TAIR|locus:2168103	216	AT5G59840 [Arabidopsis thalian	0.935	0.935	0.831	9.1e-84
TAIR|locus:2084056	216	RAB8 "RAB GTPase homolog 8" [A	0.935	0.935	0.821	1.9e-83
TAIR|locus:2075251	216	RABE1c [Arabidopsis thaliana (	0.935	0.935	0.821	2.4e-83
TAIR|locus:2142684	216	RAB8C "RAB GTPase homolog 8C"	0.921	0.921	0.78	1.8e-78
TAIR|locus:2085089	218	RABE1e "RAB GTPase homolog E1E	0.925	0.917	0.766	3.4e-77
DICTYBASE|DDB_G0280043	208	rab8A "Rab GTPase" [Dictyostel	0.898	0.932	0.655	4.2e-63
DICTYBASE|DDB_G0276399	203	rab8B "Rab GTPase" [Dictyostel	0.875	0.931	0.64	3.4e-61
POMBASE|SPAC9E9.07c	200	ypt2 "GTPase Ypt2" [Schizosacc	0.837	0.905	0.637	3.6e-57
ASPGD|ASPL0000069804	206	srgA [Emericella nidulans (tax	0.805	0.844	0.657	6.8e-56
UNIPROTKB|E1C080	178	RAB8B "Uncharacterized protein	0.768	0.932	0.658	3.7e-55

TAIR|locus:2168103 AT5G59840 [Arabidopsis thaliana (taxid:3702)]

 Score = 839 (300.4 bits), Expect = 9.1e-84, P = 9.1e-84
 Identities = 168/202 (83%), Positives = 171/202 (84%)

Query:    15 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
             LIKLLLIGDSGVGKSCLLLR                  KIRTIELDGKRIKLQIWDTAGQ
Sbjct:    15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74

Query:    75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
             ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE
Sbjct:    75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134

Query:   135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIK 194
             SKRAVP SKGQALADEYGIKFFETSAKTNLNVEEVFFSIA+DIKQRLADTDSRAEP TIK
Sbjct:   135 SKRAVPKSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLADTDSRAEPATIK 194

Query:   195 INQPDXXXXXXXXXXRSACCGS 216
             I+Q D          +SACCGS
Sbjct:   195 ISQTDQAAGAGQATQKSACCGS 216

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2084056 RAB8 "RAB GTPase homolog 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 836 (299.3 bits), Expect = 1.9e-83, P = 1.9e-83
 Identities = 166/202 (82%), Positives = 172/202 (85%)

Query:    15 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
             LIKLLLIGDSGVGKSCLLLR                  KIRTIELDGKRIKLQIWDTAGQ
Sbjct:    15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74

Query:    75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
             ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD+VNKILVGNKADMDE
Sbjct:    75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDSVNKILVGNKADMDE 134

Query:   135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIK 194
             SKRAVP SKGQALADEYG+KFFETSAKTNLNVEEVFFSIA+DIKQRLADTD+RAEPQTIK
Sbjct:   135 SKRAVPKSKGQALADEYGMKFFETSAKTNLNVEEVFFSIAKDIKQRLADTDARAEPQTIK 194

Query:   195 INQPDXXXXXXXXXXRSACCGS 216
             INQ D          +SACCG+
Sbjct:   195 INQSDQGAGTSQATQKSACCGT 216

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2075251 RABE1c [Arabidopsis thaliana (taxid:3702)]

 Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
 Identities = 166/202 (82%), Positives = 171/202 (84%)

Query:    15 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
             LIKLLLIGDSGVGKSCLLLR                  KIRTIELDGKRIKLQIWDTAGQ
Sbjct:    15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74

Query:    75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
             ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE
Sbjct:    75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134

Query:   135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIK 194
             SKRAVPT+KGQALADEYGIKFFETSAKTNLNVEEVFFSI RDIKQRL+DTDSRAEP TIK
Sbjct:   135 SKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQRLSDTDSRAEPATIK 194

Query:   195 INQPDXXXXXXXXXXRSACCGS 216
             I+Q D          +SACCG+
Sbjct:   195 ISQTDQAAGAGQATQKSACCGT 216

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0009873 "ethylene mediated signaling pathway" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0042732 "D-xylose metabolic process" evidence=RCA

TAIR|locus:2142684 RAB8C "RAB GTPase homolog 8C" [Arabidopsis thaliana (taxid:3702)]

 Score = 789 (282.8 bits), Expect = 1.8e-78, P = 1.8e-78
 Identities = 156/200 (78%), Positives = 166/200 (83%)

Query:    15 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
             LIKLLLIGDSGVGKSCLLLR                  KIRT+ELDGKRIKLQIWDTAGQ
Sbjct:    15 LIKLLLIGDSGVGKSCLLLRFSDDTFTTSFITTIGIDFKIRTVELDGKRIKLQIWDTAGQ 74

Query:    75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
             ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW++NIEQHASDNVNKILVGNKADMDE
Sbjct:    75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMKNIEQHASDNVNKILVGNKADMDE 134

Query:   135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIK 194
             SKRAVPT+KGQALADEYGIKFFETSAKTNLNVE VF SIA+DIKQRL +TD++AEPQ IK
Sbjct:   135 SKRAVPTAKGQALADEYGIKFFETSAKTNLNVENVFMSIAKDIKQRLTETDTKAEPQGIK 194

Query:   195 INQPDXXXXXXXXXXRSACC 214
             I + D          +SACC
Sbjct:   195 ITKQDTAASSSTAE-KSACC 213

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2085089 RABE1e "RAB GTPase homolog E1E" [Arabidopsis thaliana (taxid:3702)]

 Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
 Identities = 154/201 (76%), Positives = 166/201 (82%)

Query:    15 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
             LIKLLLIGDSGVGKSCLLLR                  KIRT+ELDGKRIKLQIWDTAGQ
Sbjct:    15 LIKLLLIGDSGVGKSCLLLRFSDDTFTTSFITTIGIDFKIRTVELDGKRIKLQIWDTAGQ 74

Query:    75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
             ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW++NIEQHASD+VNKILVGNKADMDE
Sbjct:    75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMKNIEQHASDSVNKILVGNKADMDE 134

Query:   135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIK 194
             SKRAVPTSKGQALADEYGIKFFETSAKTN NVE+VF SIA+DIKQRL ++D++AEPQ IK
Sbjct:   135 SKRAVPTSKGQALADEYGIKFFETSAKTNQNVEQVFLSIAKDIKQRLTESDTKAEPQGIK 194

Query:   195 INQPDXXXXXXXXXX-RSACC 214
             I + D           +SACC
Sbjct:   195 ITKQDANKASSSSTNEKSACC 215

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

DICTYBASE|DDB_G0280043 rab8A "Rab GTPase" [Dictyostelium discoideum (taxid:44689)]

 Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
 Identities = 131/200 (65%), Positives = 151/200 (75%)

Query:    15 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
             LIKLLLIGDSGVGKSCLLLR                  KIRTIEL+GKRIKLQIWDTAGQ
Sbjct:    15 LIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDTAGQ 74

Query:    75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
             ERFRTITTAYYRGAMGILLVYDVTDE SF NIRNWIRNIEQHA+D+VNK+L+GNK DM E
Sbjct:    75 ERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAE 134

Query:   135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIK 194
              K+ V +S+G++LADEYGIKF ETSAK ++NVEE F S+A+DIK+R+ DT +  +PQ + 
Sbjct:   135 -KKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLAKDIKKRMIDTPNE-QPQVV- 191

Query:   195 INQPDXXXXXXXXXXRSACC 214
               QP           + ACC
Sbjct:   192 --QPGTNLGANNNK-KKACC 208

GO:0033298 "contractile vacuole organization" evidence=IGI

GO:0032794 "GTPase activating protein binding" evidence=IPI

GO:0000331 "contractile vacuole" evidence=IDA

GO:0050708 "regulation of protein secretion" evidence=IMP

GO:0031157 "regulation of aggregate size involved in sorocarp development" evidence=IMP

GO:0030036 "actin cytoskeleton organization" evidence=IMP

GO:0016339 "calcium-dependent cell-cell adhesion" evidence=IMP

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0276399 rab8B "Rab GTPase" [Dictyostelium discoideum (taxid:44689)]

 Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
 Identities = 128/200 (64%), Positives = 147/200 (73%)

Query:    15 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
             L+KLLLIGDSGVGKSCLLLR                  KIRTIEL+GKRIKLQIWDTAGQ
Sbjct:    15 LVKLLLIGDSGVGKSCLLLRFSDGSFTPSFIATIGIDFKIRTIELEGKRIKLQIWDTAGQ 74

Query:    75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
             ERFRTITTAYYRGAMGILLVYDVTDE SF +IRNWIRNIEQHASD+VNK+L+GNK DM E
Sbjct:    75 ERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNWIRNIEQHASDSVNKMLIGNKCDMTE 134

Query:   135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIK 194
              K+ V +S+G++LADEYGIKF ETSAK ++NVEE F  +A+DIK+R+ DT     P    
Sbjct:   135 -KKVVDSSRGKSLADEYGIKFLETSAKNSVNVEEAFIGLAKDIKKRMIDT-----P---- 184

Query:   195 INQPDXXXXXXXXXXRSACC 214
              N PD          ++ CC
Sbjct:   185 -NDPDHTICITPNNKKNTCC 203

GO:0031157 "regulation of aggregate size involved in sorocarp development" evidence=IMP

GO:0016339 "calcium-dependent cell-cell adhesion" evidence=IMP

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

POMBASE|SPAC9E9.07c ypt2 "GTPase Ypt2" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
 Identities = 116/182 (63%), Positives = 137/182 (75%)

Query:    15 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
             LIKLLLIGDSGVGKSCLLLR                  KIRTIELDGKRIKLQIWDTAGQ
Sbjct:     9 LIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 68

Query:    75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
             ERFRTITTAYYRGAMGILL+YDVTD+ SF+N+R W  N+EQHAS+NV KIL+GNK D  E
Sbjct:    69 ERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDC-E 127

Query:   135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIK 194
              +R V   +GQALADE G+KF E SAKTN+NV+E FF++AR+IK++  D ++    Q   
Sbjct:   128 DQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREIKKQKIDAENEFSNQANN 187

Query:   195 IN 196
             ++
Sbjct:   188 VD 189

GO:0003924 "GTPase activity" evidence=TAS

GO:0005525 "GTP binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IC

GO:0006887 "exocytosis" evidence=IMP

GO:0006893 "Golgi to plasma membrane transport" evidence=ISO

GO:0006906 "vesicle fusion" evidence=ISO

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

ASPGD|ASPL0000069804 srgA [Emericella nidulans (taxid:162425)]

 Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
 Identities = 117/178 (65%), Positives = 132/178 (74%)

Query:    15 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
             LIKLLLIGDSGVGKSC LLR                  KIRTIELDGKR+KLQIWDTAGQ
Sbjct:    10 LIKLLLIGDSGVGKSCCLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRVKLQIWDTAGQ 69

Query:    75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
             ERFRTITTAYYRGAMGILLVYDVTDE SF NIR W  N+EQHAS+ V+KIL+GNK D +E
Sbjct:    70 ERFRTITTAYYRGAMGILLVYDVTDERSFQNIRTWFSNVEQHASEGVHKILIGNKCDWEE 129

Query:   135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQT 192
              KRAV T +GQ LADE GI F E SAK N+N+E+ F+++A DIK+ +   DS    QT
Sbjct:   130 -KRAVTTEQGQQLADELGIPFLEVSAKNNINIEKAFYNLASDIKKGM---DSSKPEQT 183

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006906 "vesicle fusion" evidence=IEA

GO:0006887 "exocytosis" evidence=IEA

GO:0006893 "Golgi to plasma membrane transport" evidence=IEA

UNIPROTKB|E1C080 RAB8B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
 Identities = 110/167 (65%), Positives = 132/167 (79%)

Query:    15 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
             L KLLLIGDSGVGK+CLL R                  KIRTIELDGK+IKLQIWDTAGQ
Sbjct:     8 LFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQ 67

Query:    75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
             ERFRTITTAYYRGAMGI+LVYD+T+E SF+NI+NWIRNIE+HAS +V ++++GNK DM+E
Sbjct:    68 ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNE 127

Query:   135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 181
              KR V   KG+ LA +YGIKF ETSAK+++NVEE FF++ARDI  +L
Sbjct:   128 -KRQVSKEKGEKLAIDYGIKFLETSAKSSINVEEAFFTLARDIMTKL 173

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0045046 "protein import into peroxisome membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P61007	RAB8A_CANFA	No assigned EC number	0.6735	0.8657	0.9033	yes	no
P61006	RAB8A_HUMAN	No assigned EC number	0.6735	0.8657	0.9033	yes	no
Q05974	RAB1A_LYMST	No assigned EC number	0.5756	0.9166	0.9658	N/A	no
P70550	RAB8B_RAT	No assigned EC number	0.6596	0.8611	0.8985	yes	no
P61028	RAB8B_MOUSE	No assigned EC number	0.6596	0.8611	0.8985	yes	no
P41924	RYL1_YARLI	No assigned EC number	0.6179	0.9212	0.9802	yes	no
Q05737	YPTM2_MAIZE	No assigned EC number	0.5885	0.9120	0.9704	N/A	no
Q5R4A3	RAB8A_PONAB	No assigned EC number	0.6735	0.8657	0.9033	yes	no
P20790	RAB8A_DICDI	No assigned EC number	0.7196	0.9629	1.0	yes	no
A4FV54	RAB8A_BOVIN	No assigned EC number	0.6683	0.8657	0.9033	yes	no
Q01890	YPT1_PHYIN	No assigned EC number	0.5784	0.9166	0.9850	N/A	no
Q9SF91	RAE1E_ARATH	No assigned EC number	0.8418	0.9907	0.9816	no	no
P28186	RAE1C_ARATH	No assigned EC number	0.9466	0.9537	0.9537	yes	no
P22128	RAB8_DIPOM	No assigned EC number	0.7117	0.7824	0.8047	N/A	no
P17609	YPT2_SCHPO	No assigned EC number	0.7444	0.8287	0.895	yes	no
P36861	YPTV2_VOLCA	No assigned EC number	0.6238	0.9814	0.9769	N/A	no
O24466	RAE1A_ARATH	No assigned EC number	0.9368	0.9537	0.9537	yes	no
Q4R5P1	RAB8A_MACFA	No assigned EC number	0.6735	0.8657	0.9033	N/A	no
P22125	RAB1_DIPOM	No assigned EC number	0.5700	0.9074	0.9702	N/A	no
P22127	RAB10_DIPOM	No assigned EC number	0.5700	0.9166	0.99	N/A	no
Q39571	YPTC1_CHLRE	No assigned EC number	0.5896	0.8888	0.9458	N/A	no
Q9LZD4	RAE1D_ARATH	No assigned EC number	0.8644	0.9861	0.9861	no	no
Q39433	RB1BV_BETVU	No assigned EC number	0.9178	0.9444	0.9488	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00024384001 SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (216 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	216
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	1e-122
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	1e-100
pfam00071	162	pfam00071, Ras, Ras family	1e-100
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	1e-100
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	5e-93
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	1e-78
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	4e-76
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	2e-72
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	5e-71
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	1e-69
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	6e-68
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	8e-67
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	2e-66
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	2e-65
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	3e-65
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	3e-63
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	4e-63
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	6e-63
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	9e-61
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	3e-59
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	6e-59
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	3e-58
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	1e-56
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	2e-56
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	9e-56
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	3e-55
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	2e-54
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	7e-54
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	5e-53
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	4e-47
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	5e-47
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	6e-47
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	9e-47
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	4e-46
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	4e-42
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	4e-40
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	1e-39
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	2e-39
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	7e-38
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	7e-38
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	1e-37
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	3e-36
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	6e-36
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	6e-36
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	6e-36
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	2e-35
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	5e-35
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	1e-34
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	6e-34
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	7e-34
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-33
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	2e-33
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	2e-32
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	3e-32
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	3e-31
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	3e-31
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	2e-30
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	2e-30
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	1e-29
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	2e-29
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	1e-28
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	2e-28
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	2e-27
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	2e-27
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	4e-26
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	2e-25
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	2e-25
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	8e-24
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	8e-24
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	2e-23
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	1e-22
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	1e-22
pfam08477	116	pfam08477, Miro, Miro-like protein	3e-22
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	1e-20
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	4e-19
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	7e-19
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	3e-18
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	1e-17
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	1e-17
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	2e-16
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	3e-16
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	3e-16
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	3e-15
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	1e-13
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	4e-13
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	7e-13
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	4e-12
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	5e-11
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	1e-10
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	3e-10
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	5e-10
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	8e-10
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	2e-09
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	2e-09
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	4e-09
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	4e-09
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	3e-08
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	4e-08
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	8e-08
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	1e-07
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	2e-07
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	3e-07
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	3e-07
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	8e-07
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	1e-06
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	3e-06
cd01892	180	cd01892, Miro2, Mitochondrial Rho family 2 (Miro2)	6e-06
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	1e-05
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	3e-05
cd01897	167	cd01897, NOG, Nucleolar GTP-binding protein (NOG)	4e-05
TIGR02729	329	TIGR02729, Obg_CgtA, Obg family GTPase CgtA	0.001
PRK12297	424	PRK12297, obgE, GTPase CgtA; Reviewed	0.001
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	0.001
cd04161	167	cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A	0.002
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	0.003

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  342 bits (879), Expect = e-122
 Identities = 126/168 (75%), Positives = 149/168 (88%), Gaps = 1/168 (0%)

Query: 13  DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTA 72
           DYL KLLLIGDSGVGKSCLLLRFS+ SF  SFI+TIGIDFKIRTIELDGK+IKLQIWDTA
Sbjct: 1   DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTA 60

Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADM 132
           GQERFRTITT+YYRGAMGI+LVYD+TDE SF NI+NW+RNI++HAS++V ++LVGNK DM
Sbjct: 61  GQERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVGNKCDM 120

Query: 133 DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           +E KR V   +G+ALA EYGIKF ETSAK N+NVEE F ++A+DI ++
Sbjct: 121 EE-KRVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAKDILKK 167

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  287 bits (738), Expect = e-100
 Identities = 99/165 (60%), Positives = 133/165 (80%), Gaps = 1/165 (0%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            K++LIGDSGVGKS LL RF+DG F+  + +TIG+DFK +TIE+DGKR+KLQIWDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           RFR+IT++YYRGA+G LLVYD+T+  SF N+ NW++ + ++AS NV  +LVGNK+D+ E 
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVGNKSDL-EE 119

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           +R V   + +A A+E+G+ FFETSAKTN NVEE F  +AR+I +R
Sbjct: 120 QRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILKR 164

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  287 bits (737), Expect = e-100
 Identities = 94/163 (57%), Positives = 119/163 (73%), Gaps = 1/163 (0%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+L+GD GVGKS LL+RF+   F   +I TIG+DF  +TIE+DGK +KLQIWDTAGQER
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK 136
           FR +   YYRGA G LLVYD+T   SF N++ W+  I +HA +NV  +LVGNK D+ E +
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCDL-EDQ 119

Query: 137 RAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 179
           R V T +G+ALA E G+ F ETSAKTN NVEE F  +AR+I +
Sbjct: 120 RVVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  286 bits (733), Expect = e-100
 Identities = 111/167 (66%), Positives = 141/167 (84%), Gaps = 1/167 (0%)

Query: 14  YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73
           YL KLLLIGDSGVGKSCLLLRF+D ++T S+I+TIG+DFKIRTIELDGK +KLQIWDTAG
Sbjct: 1   YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAG 60

Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133
           QERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+ 
Sbjct: 61  QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 120

Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
             K+ V  ++ +  ADE GI F ETSAK   NVEE F ++AR+IK+R
Sbjct: 121 -DKKVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREIKKR 166

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  268 bits (688), Expect = 5e-93
 Identities = 93/160 (58%), Positives = 124/160 (77%), Gaps = 1/160 (0%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            K++LIGDSGVGK+ LLLRF D  F+ ++ +TIG+DFK +TIE+DGK++KLQIWDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           RFR+IT++YYRGA G +LVYDVT+  SF N+  W+  ++++A  N+  ILVGNK+D+ E 
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSDL-ED 119

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR 175
           +R V T + Q  A E G+ FFETSAKT  NV+E F S+AR
Sbjct: 120 ERQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  233 bits (597), Expect = 1e-78
 Identities = 103/204 (50%), Positives = 140/204 (68%), Gaps = 7/204 (3%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           DYD+L KLL+IGDSGVGKS LLLRF+D +F+ S+ITTIG+DFKIRT+E++G+R+KLQIWD
Sbjct: 2   DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWD 61

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130
           TAGQERFRTIT+ YYRG  G+++VYDVT+  SF N++ W++ IEQ+  D+V K+LVGNK 
Sbjct: 62  TAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKN 120

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEP 190
           D D  ++ V T      A + GI  FETSAK N+NVEE+F  I   + +       +   
Sbjct: 121 D-DPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRA-----KKDNL 174

Query: 191 QTIKINQPDQAGGAAQAAQRSACC 214
              +  Q +      + ++R   C
Sbjct: 175 AKQQQQQQNDVVKLPKNSKRKKRC 198

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  226 bits (578), Expect = 4e-76
 Identities = 89/165 (53%), Positives = 118/165 (71%), Gaps = 1/165 (0%)

Query: 13  DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTA 72
           DYL K++LIGDSGVGKS LL RF+   F     +TIG++F  RTI++DGK IK QIWDTA
Sbjct: 1   DYLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTA 60

Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADM 132
           GQER+R IT+AYYRGA+G LLVYD+T +S+F N+  W++ +  HA  N+  +LVGNK+D+
Sbjct: 61  GQERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHADSNIVIMLVGNKSDL 120

Query: 133 DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
               RAVPT + +A A++ G+ F ETSA    NVEE F  +  +I
Sbjct: 121 -RHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI 164

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  216 bits (553), Expect = 2e-72
 Identities = 81/163 (49%), Positives = 119/163 (73%), Gaps = 3/163 (1%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +K+LLIGDSGVGKS LLLRF+D +F     +TIG+DFK++T+ +DGK++KL IWDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDE 134
           RFRT+T++YYRGA G++LVYDVT   +F+N+  W+  ++ ++ + +  K+LVGNK  +D+
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNK--IDK 118

Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
             R V   +GQ  A ++ + F ETSAKT + V++ F  +   I
Sbjct: 119 ENREVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  213 bits (544), Expect = 5e-71
 Identities = 90/166 (54%), Positives = 122/166 (73%), Gaps = 1/166 (0%)

Query: 12  YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
           Y YL K ++IGD+GVGKSCLLL+F+D  F      TIG++F  R I +DGK+IKLQIWDT
Sbjct: 1   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 60

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKAD 131
           AGQE FR+IT +YYRGA G LLVYD+T   +FN++ +W+ +  QH++ N+  +L+GNK D
Sbjct: 61  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCD 120

Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
           + ES+R V   +G+A A E+G+ F ETSAKT  NVEE F + A++I
Sbjct: 121 L-ESRREVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 165

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  209 bits (534), Expect = 1e-69
 Identities = 90/156 (57%), Positives = 124/156 (79%), Gaps = 1/156 (0%)

Query: 15  LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           + KLL+IG+S VGK+  L R++D SFT++F++T+GIDFK++T+  + KRIKLQIWDTAGQ
Sbjct: 1   MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQ 60

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   ILVGNK DM E
Sbjct: 61  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDM-E 119

Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170
            +R V   +G+ LAD+ G +FFE SAK N+NV++VF
Sbjct: 120 DERVVSAERGRQLADQLGFEFFEASAKENINVKQVF 155

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  207 bits (527), Expect = 6e-68
 Identities = 97/209 (46%), Positives = 130/209 (62%), Gaps = 7/209 (3%)

Query: 12  YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
           Y YL K ++IGD+GVGKSCLLL+F+D  F      TIG++F  R I +D K IKLQIWDT
Sbjct: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKAD 131
           AGQE FR+IT +YYRGA G LLVYD+T   +FN++ +W+ +  QHA+ N+  +L+GNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122

Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADT--DSRAE 189
           +   +RAV T +G+  A E+G+ F E SAKT  NVEE F   A  I +++ D   D   E
Sbjct: 123 LAH-RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKKIQDGVFDVSNE 181

Query: 190 PQTIKIN----QPDQAGGAAQAAQRSACC 214
              IK+          G    ++Q   CC
Sbjct: 182 SYGIKVGYGAIPGASGGRDGTSSQGGGCC 210

Length = 210

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  202 bits (515), Expect = 8e-67
 Identities = 89/158 (56%), Positives = 122/158 (77%), Gaps = 1/158 (0%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           +LLLIGDSGVGK+CLL RF+D  F +S I+TIG+DFK++TIE+DG ++++QIWDTAGQER
Sbjct: 2   RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQER 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK 136
           ++TIT  YYR A GI LVYD++ E S+ +I  W+ +++++A + V KIL+GNKAD +E K
Sbjct: 62  YQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKAD-EEQK 120

Query: 137 RAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA 174
           R V   +G  LA EYG+ FFETSA TN N++E F  + 
Sbjct: 121 RQVGDEQGNKLAKEYGMDFFETSACTNKNIKESFTRLT 158

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  201 bits (513), Expect = 2e-66
 Identities = 83/166 (50%), Positives = 119/166 (71%), Gaps = 2/166 (1%)

Query: 13  DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTA 72
           D+L K++LIGDS VGK+C++ RF  G+F+     TIG+DF ++T+E+ GKR+KLQIWDTA
Sbjct: 1   DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTA 60

Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADM 132
           GQERFRTIT +YYR A G ++ YD+T  SSF ++ +WI  +E++ + NV  +L+GNK D+
Sbjct: 61  GQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDL 120

Query: 133 DESKRAVPTSKGQALADEYGIKF-FETSAKTNLNVEEVFFSIARDI 177
           +E +R V   +   LA+ YGI    ETSAK + NVEE F  +A ++
Sbjct: 121 EE-QREVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMATEL 165

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  199 bits (508), Expect = 2e-65
 Identities = 95/199 (47%), Positives = 134/199 (67%), Gaps = 10/199 (5%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           K++L+GDSGVGK+CLL+RF DG+F   SFI T+GI F  + + +DG ++KLQIWDTAGQE
Sbjct: 2   KVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQE 61

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           RFR++T AYYR A  +LL+YDVT++SSF+NIR W+  I ++A  +V  +L+GNKADM   
Sbjct: 62  RFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKADM-SG 120

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIKI 195
           +R V    G+ LA EYG+ F ETSAKT LNVE  F ++A+++K R  +     + +    
Sbjct: 121 ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRSVEQPDEPKFKIQDY 180

Query: 196 NQPDQAGGAAQAAQRSACC 214
            +        +  + S CC
Sbjct: 181 VE--------KQKKSSGCC 191

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  199 bits (507), Expect = 3e-65
 Identities = 84/168 (50%), Positives = 117/168 (69%), Gaps = 12/168 (7%)

Query: 12  YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD----------G 61
           YDYLIKLL +GDSGVGK+  L R++D  F   FITT+GIDF+ + +  +           
Sbjct: 1   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKA 60

Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDN 120
            R+ LQ+WDTAGQERFR++TTA++R AMG LL++D+T E SF N+RNW+  ++ HA  +N
Sbjct: 61  FRVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCEN 120

Query: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE 168
            + +L+GNKAD+   +R V   + + LAD+YGI +FETSA T  NVE+
Sbjct: 121 PDIVLIGNKADL-PDQREVSERQARELADKYGIPYFETSAATGQNVEK 167

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  195 bits (497), Expect = 3e-63
 Identities = 90/214 (42%), Positives = 131/214 (61%), Gaps = 5/214 (2%)

Query: 7   RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKL 66
           R   +YDYL K++LIGDSGVGKS +L RF+   F     +TIG++F  RT++++GK +K 
Sbjct: 4   RVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKA 63

Query: 67  QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILV 126
           QIWDTAGQER+R IT+AYYRGA+G LLVYD+T   +F+N++ W+R +  HA  N+  ++ 
Sbjct: 64  QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMA 123

Query: 127 GNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDS 186
           GNK+D++   R+V    GQALA++ G+ F ETSA    NVE+ F +I  +I   ++    
Sbjct: 124 GNKSDLNHL-RSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHIISKKAL 182

Query: 187 RAEPQTIKINQPDQAG----GAAQAAQRSACCGS 216
            A+        P Q             +  CC +
Sbjct: 183 AAQEAAANSGLPGQGTTINVADTSGNNKRGCCST 216

Length = 216

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  193 bits (491), Expect = 4e-63
 Identities = 83/164 (50%), Positives = 118/164 (71%), Gaps = 1/164 (0%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           DYD+L K++LIG++GVGK+CL+ RF+ G F      TIG+DF I+T+E+ G++IKLQIWD
Sbjct: 3   DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWD 62

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130
           TAGQERFR+IT +YYR A  ++L YD+T E SF  +  W+R IEQ+A++ V  ILVGNK 
Sbjct: 63  TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKI 122

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA 174
           D+ E +R V   + +  +D   + + ETSAK + NVE++F  +A
Sbjct: 123 DLAE-RREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLA 165

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  192 bits (491), Expect = 6e-63
 Identities = 78/161 (48%), Positives = 108/161 (67%), Gaps = 1/161 (0%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+L+GDS VGKS ++LRF    F+ +  +TIG  F  +T+ LD   +K +IWDTAGQER
Sbjct: 3   KLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQER 62

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK 136
           +R++   YYRGA   ++VYD+T E SF   ++W++ +++H   N+   L GNKAD+ ESK
Sbjct: 63  YRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGNKADL-ESK 121

Query: 137 RAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
           R V T + Q  ADE G+ F ETSAKT  NV E+F  IAR +
Sbjct: 122 RQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKL 162

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  188 bits (480), Expect = 9e-61
 Identities = 81/181 (44%), Positives = 120/181 (66%), Gaps = 9/181 (4%)

Query: 14  YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTA 72
           Y  +L++IGDS VGKS LL RF++G F      T+G+DF  R IE+  G RIKLQ+WDTA
Sbjct: 1   YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTA 60

Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIR----NIEQHASDNVNKILVGN 128
           GQERFR+IT +YYR ++G+LLV+D+T+  SF ++ +W+     +I+ H       ILVG+
Sbjct: 61  GQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHR---PVFILVGH 117

Query: 129 KADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRA 188
           K D++ S+R V   + + LA + G+K+ ETSA+T  NVEE F  + ++I +R+   +  A
Sbjct: 118 KCDLE-SQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIKRGELCA 176

Query: 189 E 189
            
Sbjct: 177 L 177

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  183 bits (466), Expect = 3e-59
 Identities = 79/166 (47%), Positives = 111/166 (66%), Gaps = 1/166 (0%)

Query: 14  YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73
           Y+ K ++IGD GVGKSCLL +F++  F      TIG++F  R IE++G++IKLQIWDTAG
Sbjct: 1   YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAG 60

Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133
           QERFR +T +YYRGA G L+VYD+T  S++N++ +W+ +     + N    L+GNKAD++
Sbjct: 61  QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 120

Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 179
              R V   + +  ADE G+ F E SAKT  NVE+ F   A+ I Q
Sbjct: 121 AQ-RDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIYQ 165

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  182 bits (464), Expect = 6e-59
 Identities = 68/162 (41%), Positives = 103/162 (63%), Gaps = 1/162 (0%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            K++L+G+  VGK+ L+LR+ +  F     +T    F  +T+ + GKRI L IWDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           R+  +   YYR A G +LVYD+TD  SF  ++ WI+ ++Q   +N++ ++VGNK D+ E 
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDL-ER 119

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
           +R V  S+ +  A   G K FETSAKT   +EE+F S+A+ +
Sbjct: 120 QRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  180 bits (459), Expect = 3e-58
 Identities = 80/161 (49%), Positives = 103/161 (63%), Gaps = 1/161 (0%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K L+IG +G GKSCLL +F +  F      TIG++F  R + + GK +KLQIWDTAGQER
Sbjct: 2   KFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQER 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK 136
           FR++T +YYRGA G LLVYD+T   SFN + NW+ +    AS ++  ILVGNK D+++  
Sbjct: 62  FRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPDIVIILVGNKKDLED-D 120

Query: 137 RAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
           R V   +    A E G+ F ETSA T  NVEE F   AR I
Sbjct: 121 REVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  178 bits (452), Expect = 1e-56
 Identities = 96/207 (46%), Positives = 128/207 (61%), Gaps = 11/207 (5%)

Query: 12  YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
           YD   K+LLIGDSGVGKS LL+ F   S       TIG+DFKI+ + + GKR+KL IWDT
Sbjct: 11  YDLSFKILLIGDSGVGKSSLLVSFISSS-VEDLAPTIGVDFKIKQLTVGGKRLKLTIWDT 69

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASD-NVNKILVGNK 129
           AGQERFRT+T++YYR A GI+LVYDVT   +F N+ + W + +E ++++ +  K+LVGNK
Sbjct: 70  AGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNK 129

Query: 130 ADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ--RLADTDSR 187
            D  ES+R V   +G ALA E+G  F E SAKT  NVE+ F  +A  I +   L +  S 
Sbjct: 130 VDR-ESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEVPSLLEEGST 188

Query: 188 AEPQTIKINQPDQAGGAAQAAQRSACC 214
           A  + I   +P+      Q      CC
Sbjct: 189 AVKRNILKQKPEH-----QPPPNGGCC 210

Length = 211

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  176 bits (447), Expect = 2e-56
 Identities = 80/168 (47%), Positives = 113/168 (67%), Gaps = 6/168 (3%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K+++IGDS VGK+CL  RF  G F      TIG+DF+ RT+E+DG+RIK+Q+WDTAGQER
Sbjct: 4   KIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQER 63

Query: 77  FR-TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDE 134
           FR ++   YYR    ++ VYDVT+ +SF+++ +WI   EQH+  + V +ILVGNK D+ E
Sbjct: 64  FRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLRE 123

Query: 135 SKRAVPTSKGQALADEYGIKFFETSAK---TNLNVEEVFFSIARDIKQ 179
             + VPT   Q  AD + +  FETSAK    N +VE +F ++A  +K 
Sbjct: 124 QIQ-VPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKLKS 170

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  174 bits (444), Expect = 9e-56
 Identities = 70/169 (41%), Positives = 108/169 (63%), Gaps = 6/169 (3%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K++++GDSGVGK+ L+ ++ +  F+  +  TIG DF  + + +D + + LQIWDTAGQER
Sbjct: 2   KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQER 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKILVGNKADM 132
           F+++  A+YRGA   +LVYDVT+  SF ++ +W       AS    +N   +++GNK D+
Sbjct: 62  FQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 121

Query: 133 DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVFFSIARDIKQR 180
           +E KR V T K Q      G I +FETSAK  +NV++ F +IAR   ++
Sbjct: 122 EE-KRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIARLALEQ 169

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  173 bits (440), Expect = 3e-55
 Identities = 67/158 (42%), Positives = 101/158 (63%), Gaps = 1/158 (0%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+ +GD  VGK+ ++ RF   +F   +  TIGIDF  +T+ +D K ++LQ+WDTAGQER
Sbjct: 2   KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQER 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK 136
           FR++  +Y R +   ++VYD+T+  SF+N   WI ++     ++V  +LVGNK D+ + K
Sbjct: 62  FRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSD-K 120

Query: 137 RAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA 174
           R V T +G+  A E    F ETSAK   NV+++F  IA
Sbjct: 121 RQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKIA 158

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  170 bits (434), Expect = 2e-54
 Identities = 69/162 (42%), Positives = 97/162 (59%), Gaps = 3/162 (1%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L +RF  G F   +  TI  D   + I +DG+   L I DTAGQE 
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIE-DSYRKQIVVDGETYTLDILDTAGQEE 59

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKILVGNKADMDES 135
           F  +   Y R   G +LVY +T   SF  I+N    I      ++V  +LVGNK D++  
Sbjct: 60  FSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIVLVGNKCDLENE 119

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
            R V T +G+ALA+E+G  F ETSAKTN+N++E+F ++ R+I
Sbjct: 120 -RQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score =  170 bits (432), Expect = 7e-54
 Identities = 84/170 (49%), Positives = 111/170 (65%), Gaps = 2/170 (1%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
            YDYL+K LL+GDS VGK  +L    DGS  + +   +GID+K  TI LDG+R+KLQ+WD
Sbjct: 2   AYDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWD 61

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130
           T+GQ RF TI  +Y RGA GI+LVYD+T+  SF+ I  WI+ I++HA   V KILVGN+ 
Sbjct: 62  TSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAP-GVPKILVGNRL 120

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
            +   KR V T + QA A+  G+ FFE S   N N+ E F  +AR +  R
Sbjct: 121 HL-AFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVLMR 169

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  169 bits (428), Expect = 5e-53
 Identities = 77/167 (46%), Positives = 124/167 (74%), Gaps = 2/167 (1%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++++IG  GVGK+ L+ RF+D +F  +  +T+G+DFKI+T+EL GK+I+LQIWDTAGQE
Sbjct: 1   LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           RF +IT+AYYR A GI+LVYD+T + +F+++  W++ I+++AS++   +LVGNK D  E+
Sbjct: 61  RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC-ET 119

Query: 136 KRAVPTSKGQALADEY-GIKFFETSAKTNLNVEEVFFSIARDIKQRL 181
            R +   +G+  A +  G++F E SAK N NV+E+F  +  DI +++
Sbjct: 120 DREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 166

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  152 bits (386), Expect = 4e-47
 Identities = 70/165 (42%), Positives = 100/165 (60%), Gaps = 3/165 (1%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++F  G F   +  TI  D   + IE+DG+   L I DTAGQE 
Sbjct: 2   KLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEE 60

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDES 135
           F  +   Y R   G LLVY +TD  SF  I+ +   I +    D+V  +LVGNK D+ ES
Sbjct: 61  FSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDL-ES 119

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           +R V T +G+ LA ++G  F ETSAK  +NV+E F+ + R+I+++
Sbjct: 120 ERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREIRKK 164

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  152 bits (385), Expect = 5e-47
 Identities = 56/167 (33%), Positives = 99/167 (59%), Gaps = 6/167 (3%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IK++ +G+SGVGKSC++ R+ +G F + ++ TIGID+ ++ + +  K +++  +D +G  
Sbjct: 1   IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQH-----ASDNVNKILVGNKA 130
            +  +   +Y+   G+LLVYDVTD  SF  + +W++ ++Q        +N+  ++  NK 
Sbjct: 61  EYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKI 120

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
           D     RAV   +G+  A+  G K+FETSA T   V E+F ++   I
Sbjct: 121 D-LTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSI 166

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  151 bits (385), Expect = 6e-47
 Identities = 69/165 (41%), Positives = 97/165 (58%), Gaps = 3/165 (1%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++F  G F   +  TI  D   + IE+DG+   L I DTAGQE 
Sbjct: 4   KLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEE 62

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKILVGNKADMDES 135
           F  +   Y R   G LLVY +TD  SF  I  +   I      D+V  +LVGNK D+ E+
Sbjct: 63  FSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDDVPIVLVGNKCDL-EN 121

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           +R V T +G+ LA ++G  F ETSAK  +NV+E F+ + R+I++ 
Sbjct: 122 ERVVSTEEGKELARQWGCPFLETSAKERINVDEAFYDLVREIRKS 166

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  152 bits (387), Expect = 9e-47
 Identities = 65/207 (31%), Positives = 111/207 (53%), Gaps = 16/207 (7%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRI-KLQIWDTAGQE 75
           K+L+IGD GVGK+ ++ R+  G F+  +  TIG+DF ++ IE D   + +LQ+WD AGQE
Sbjct: 2   KVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE 61

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK----ILVGNKAD 131
           RF  +T  YY+GA+G ++V+DVT  S+F  +  W  +++   +    +    +L+ NK D
Sbjct: 62  RFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLANKCD 121

Query: 132 MDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVFFSIARDI---KQRLADTDSR 187
           + + + A    +      E G I +FETSAK N+N+EE    + ++I    + L   +  
Sbjct: 122 LKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNILKNDKGLQSPEPD 181

Query: 188 AEPQTIKINQPDQAGGAAQAAQRSACC 214
            +       +          ++  +CC
Sbjct: 182 EDNVIDLKQET-------TTSKSKSCC 201

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  151 bits (383), Expect = 4e-46
 Identities = 72/215 (33%), Positives = 102/215 (47%), Gaps = 19/215 (8%)

Query: 12  YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
           +    K++++GD GVGK+ LL R     F   +  TIG     +TIE   + IKLQ+WDT
Sbjct: 2   FMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDT 61

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTD-ESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130
           AGQE +R++   YYRGA GIL+VYD T  ESS      W+  + + A D+V  +LVGNK 
Sbjct: 62  AGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKI 121

Query: 131 D-----------MDESKRAVPTSKGQALADE---YGIKFFETSAK--TNLNVEEVFFSIA 174
           D           +++  R V        A           ETSAK  T  NV E+F  + 
Sbjct: 122 DLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELL 181

Query: 175 RDIKQRLADT--DSRAEPQTIKINQPDQAGGAAQA 207
           R + + +      +         N  +QA  A+  
Sbjct: 182 RKLLEEIEKLVLKNELRQLDRLNNPIEQAALASFN 216

Length = 219

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  139 bits (354), Expect = 4e-42
 Identities = 57/167 (34%), Positives = 89/167 (53%), Gaps = 14/167 (8%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IK++++GD  VGK+CLL+ ++   F T ++ T+  D     + +DGK++ L +WDTAGQE
Sbjct: 1   IKIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV-FDNYSANVTVDGKQVNLGLWDTAGQE 59

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADM-- 132
            +  +    Y      LL + V   SSF N++  W   I+ +   NV  ILVG K D+  
Sbjct: 60  EYDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYCP-NVPIILVGTKIDLRD 118

Query: 133 DESKRA--------VPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
           D +           +   +G+ LA E G +K+ E SA T   ++EVF
Sbjct: 119 DGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVF 165

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  135 bits (340), Expect = 4e-40
 Identities = 68/168 (40%), Positives = 97/168 (57%), Gaps = 7/168 (4%)

Query: 15  LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           L+K++L+GD GVGKS L+ R+    F T    TIG++F  + +E+DG  + LQIWDTAGQ
Sbjct: 5   LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ 64

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNK---ILVGNKA 130
           ERFR++ T +YRG+   LL + V D  SF N+ NW +    +A          +++GNK 
Sbjct: 65  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 124

Query: 131 DMDESKRAVPTSKGQALADEYGIK-FFETSAKTNLNVEEVFFSIARDI 177
           D+   +R V T + QA   + G   +FETSAK   NV   F    R +
Sbjct: 125 DI--PERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 170

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  132 bits (335), Expect = 1e-39
 Identities = 65/164 (39%), Positives = 98/164 (59%), Gaps = 3/164 (1%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K++++G  GVGKS L L+F    F   +  T   D   + + LDG+ ++L I DTAGQE 
Sbjct: 2   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQLNILDTAGQED 60

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDES 135
           +  I   Y+R   G LLV+ +TD  SF  +  +   I +    DNV  +LVGNK D+++ 
Sbjct: 61  YAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLED- 119

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 179
           KR V   +   LA+++G+ + ETSAKT  NV++VFF + R+I+Q
Sbjct: 120 KRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVREIRQ 163

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  132 bits (334), Expect = 2e-39
 Identities = 62/158 (39%), Positives = 91/158 (57%), Gaps = 6/158 (3%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD--GKRIKLQIWDTAG 73
           IK++++G+  VGKS ++ RF  G FT  +  TIG+DF  + I L    + ++L +WDTAG
Sbjct: 1   IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAG 60

Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADM- 132
           QE F  IT AYYRGA   +LV+  TD  SF  I +W   +E    D +  +LV  K D+ 
Sbjct: 61  QEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGD-IPMVLVQTKIDLL 119

Query: 133 DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170
           D++   +   + +ALA    +  F TS K + NV E+F
Sbjct: 120 DQA--VITNEEAEALAKRLQLPLFRTSVKDDFNVTELF 155

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score =  128 bits (324), Expect = 7e-38
 Identities = 63/163 (38%), Positives = 92/163 (56%), Gaps = 4/163 (2%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++     F   +  TI  D   + + +DG+   L I DTAGQE 
Sbjct: 3   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEE 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDES 135
           +  +   Y R   G L V+ +    SF +I  +   I++   SD+V  +LVGNK D+  +
Sbjct: 62  YSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDL--A 119

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIK 178
            R V T +GQ LA  YGI + ETSAKT   VEE F+++ R+I+
Sbjct: 120 ARTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREIR 162

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score =  128 bits (324), Expect = 7e-38
 Identities = 65/165 (39%), Positives = 99/165 (60%), Gaps = 8/165 (4%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++F  G F   +  TI  D   + IE+D ++  L+I DTAG E+
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIE-DSYRKQIEVDCQQCMLEILDTAGTEQ 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI---RNWIRNIEQHASDNVNKILVGNKADMD 133
           F  +   Y +   G  LVY +T + SFN++   R  I  ++   +++V  ILVGNK D+ 
Sbjct: 62  FTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKD--TEDVPMILVGNKCDL- 118

Query: 134 ESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVFFSIARDI 177
           E +R V   +GQ LA ++G   F ETSAK+ +NV+E+F+ + R I
Sbjct: 119 EDERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQI 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =  128 bits (325), Expect = 1e-37
 Identities = 54/166 (32%), Positives = 86/166 (51%), Gaps = 15/166 (9%)

Query: 18  LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 77
           L+++GD  VGK+CLL+ ++  +F   ++ T+  +     +E+DGK ++L +WDTAGQE +
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTV-FENYSADVEVDGKPVELGLWDTAGQEDY 59

Query: 78  RTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADM---- 132
             +    Y      L+ + V   +SF N++  W   ++     NV  ILVG K D+    
Sbjct: 60  DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP-NVPIILVGTKLDLRNDK 118

Query: 133 -------DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
                   + +  V   +GQALA   G +K+ E SA T   V EVF
Sbjct: 119 STLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVF 164

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  124 bits (314), Expect = 3e-36
 Identities = 66/163 (40%), Positives = 91/163 (55%), Gaps = 3/163 (1%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++F    F T +  TI  D   +  E+DG+  +L I DTAGQE 
Sbjct: 4   KLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCEIDGQWARLDILDTAGQEE 62

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDES 135
           F  +   Y R   G LLV+ VTD  SF  +  +   I +    D    ILVGNKAD+ E 
Sbjct: 63  FSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADL-EH 121

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIK 178
           +R V   +GQ LA +  I + ETSAK  +NV++ F  + R I+
Sbjct: 122 QRQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDLVRVIR 164

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score =  124 bits (314), Expect = 6e-36
 Identities = 63/169 (37%), Positives = 95/169 (56%), Gaps = 13/169 (7%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           +K++++G   VGK+ L+ R+    F    +  TIG  F  + + +  + + L IWDTAG 
Sbjct: 1   VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGS 60

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI---RNIEQHASDNVNKI-LVGNKA 130
           ER+  ++  YYRGA   ++ YD+TD SSF   + W+   +N+E+H      KI L G K+
Sbjct: 61  ERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHC-----KIYLCGTKS 115

Query: 131 DM---DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARD 176
           D+   D S R V     Q  ADE   + FETS+KT  NV+E+F  +A D
Sbjct: 116 DLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAED 164

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score =  123 bits (311), Expect = 6e-36
 Identities = 64/164 (39%), Positives = 101/164 (61%), Gaps = 7/164 (4%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++F  G F   +  TI   ++ + +E+DG++  L+I DTAG E+
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQ 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNN---IRNWIRNIEQHASDNVNKILVGNKADMD 133
           F  +   Y +   G +LVY +T +S+FN+   +R  I  ++   +++V  ILVGNK D+ 
Sbjct: 62  FTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKD--TEDVPMILVGNKCDL- 118

Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
           E +R V   +GQ LA ++G  F ETSAK  +NV E+F+ + R I
Sbjct: 119 EDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score =  123 bits (311), Expect = 6e-36
 Identities = 62/162 (38%), Positives = 98/162 (60%), Gaps = 3/162 (1%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K++++G  GVGKS L ++F  G+F   +  TI  DF  + IE+D     L+I DTAG E+
Sbjct: 3   KVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQ 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDES 135
           F ++   Y +   G ++VY + ++ +F +I+     I +    + V  ILVGNK D+ ES
Sbjct: 62  FASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDL-ES 120

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
           +R V +++G+ALA+E+G  F ETSAK+   V E+F  I R +
Sbjct: 121 EREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score =  123 bits (309), Expect = 2e-35
 Identities = 70/179 (39%), Positives = 101/179 (56%), Gaps = 4/179 (2%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++F    F   +  TI   ++ +   +D +   L I DTAGQE 
Sbjct: 7   KLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYR-KQCVIDEETCLLDILDTAGQEE 65

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDES 135
           +  +   Y R   G L VY +T  SSF  I ++   I +    D V  ILVGNK D+D S
Sbjct: 66  YSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLD-S 124

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIK 194
           +R V T +GQ LA  +GI F ETSAK  +NV+E F+ + R+I++ L + D  ++ Q  K
Sbjct: 125 ERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRKYLKE-DMPSQKQKKK 182

Length = 189

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score =  121 bits (305), Expect = 5e-35
 Identities = 60/160 (37%), Positives = 96/160 (60%), Gaps = 2/160 (1%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K++++GD  VGK+CL+ RF    F  ++  TIG+DF++   E+ G    LQ+WDTAGQER
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRN-IEQHASDNVNKILVGNKADMDES 135
           F+ I + YYRGA  I++V+D+TD +S  + R W+ + ++++   +V   LVG K D+   
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSP 121

Query: 136 KRAVPTSKGQA-LADEYGIKFFETSAKTNLNVEEVFFSIA 174
            +     +    LA E   +++  SA T  NV + FF +A
Sbjct: 122 AQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFFFRVA 161

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score =  120 bits (303), Expect = 1e-34
 Identities = 66/165 (40%), Positives = 99/165 (60%), Gaps = 8/165 (4%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K++++G  GVGKS L ++F    F  S+  TI   ++ + +E+DG++  L+I DTAG E+
Sbjct: 3   KIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYR-KQVEIDGRQCDLEILDTAGTEQ 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNN---IRNWIRNIEQHASDNVNKILVGNKADMD 133
           F  +   Y +   G LLVY VT E+S N    +R  +  I+   SDNV  +LVGNKAD+ 
Sbjct: 62  FTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKD--SDNVPMVLVGNKADL- 118

Query: 134 ESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVFFSIARDI 177
           E  R V    G +L+ ++G + F+ETSA+   NV+EVF  + R I
Sbjct: 119 EDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQI 163

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  119 bits (300), Expect = 6e-34
 Identities = 59/187 (31%), Positives = 102/187 (54%), Gaps = 5/187 (2%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD GVGK+ L ++     F  ++  TI   ++ + + +DG+   L++ DTAGQE 
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVV-VDGQPCMLEVLDTAGQEE 59

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNW---IRNIEQHASDNVNKILVGNKADMD 133
           +  +   + R   G +LVY +T  S+F  +  +   I+ ++  ++ +V  ++VGNK D  
Sbjct: 60  YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119

Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTI 193
              R V T +G ALA   G +F E SAKTN+NVE  F+++ R ++Q+           T 
Sbjct: 120 YE-REVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQRQGGQGPKGGPTK 178

Query: 194 KINQPDQ 200
           K  +  +
Sbjct: 179 KKEKKKR 185

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score =  119 bits (301), Expect = 7e-34
 Identities = 54/172 (31%), Positives = 94/172 (54%), Gaps = 16/172 (9%)

Query: 13  DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDT 71
           D  +K++++GD G GK+CLL+ ++ GSF   ++ T+  +  + T+++ +GK I+L +WDT
Sbjct: 1   DLKVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTV-FENYVTTLQVPNGKIIELALWDT 59

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKA 130
           AGQE +  +    Y     IL+ Y V + +S +N+ + W   +  H       +LVG K 
Sbjct: 60  AGQEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEV-NHFCPGTPIVLVGLKT 118

Query: 131 DMDESKRA-----------VPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
           D+ + K +           V   +G+++A   G + + E SAK   NV+EVF
Sbjct: 119 DLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVF 170

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score =  117 bits (295), Expect = 2e-33
 Identities = 53/165 (32%), Positives = 75/165 (45%), Gaps = 12/165 (7%)

Query: 19  LLIGDSGVGKSCLLLRFSDGSFT---TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++G  GVGKS LL     G          TT   D      ELD  ++KL + DT G +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVY--VKELDKGKVKLVLVDTPGLD 58

Query: 76  RF-----RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130
            F       +     RGA  ILLV D TD  S  + +  I  + +   + +  ILVGNK 
Sbjct: 59  EFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLI--LRRLRKEGIPIILVGNKI 116

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR 175
           D+ E +      + + LA   G+  FE SAKT   V+E+F  +  
Sbjct: 117 DLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score =  117 bits (295), Expect = 2e-33
 Identities = 64/172 (37%), Positives = 94/172 (54%), Gaps = 15/172 (8%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFI----TTIGIDFKIRTIELDGKRIKLQIWDTA 72
           K+ ++G SGVGKS L +RF     T  FI      +   +  R + +DG+++ L+I DT 
Sbjct: 1   KIAVLGASGVGKSALTVRF----LTKRFIGEYEPNLESLYS-RQVTIDGEQVSLEIQDTP 55

Query: 73  GQERFRT--ITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD--NVNKILVGN 128
           GQ++           R A G +LVY +TD SSF+ +   ++ I +       +  ILVGN
Sbjct: 56  GQQQNEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGN 115

Query: 129 KADMDESKRAVPTSKGQALADEYGIKFFETSAKTN-LNVEEVFFSIARDIKQ 179
           KAD+  S R V T +GQ LA E G  FFE SA  N L V+ VF  + R++++
Sbjct: 116 KADLLHS-RQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVFHELCREVRR 166

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score =  115 bits (290), Expect = 2e-32
 Identities = 59/163 (36%), Positives = 91/163 (55%), Gaps = 5/163 (3%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K+ ++G   VGKS L ++F +G F  S+  TI   F  + I   G+   L+I DTAGQ+ 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIITYKGQEYHLEIVDTAGQDE 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRN--IEQHASDNVNKILVGNKADMDE 134
           +  +   Y  G  G +LVY VT   SF  ++  I +  ++    ++V  +LVGNK+D+  
Sbjct: 62  YSILPQKYSIGIHGYILVYSVTSRKSFEVVKV-IYDKILDMLGKESVPIVLVGNKSDLH- 119

Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
            +R V   +G+ LA+ +G  F E+SAK N NVEE F  +  +I
Sbjct: 120 MERQVSAEEGKKLAESWGAAFLESSAKENENVEEAFELLIEEI 162

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score =  114 bits (287), Expect = 3e-32
 Identities = 61/164 (37%), Positives = 93/164 (56%), Gaps = 6/164 (3%)

Query: 17  KLLLIGDSGVGKSCLLLRF-SDGS-FTTSFITTIGIDFKIRTIEL--DGKRIKLQIWDTA 72
           +  ++GD  VGKS L+  F SDG+ F  ++  T G D  ++T+ +      ++L I+D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD-NVNKILVGNKAD 131
           GQE F  +    +     + +VYDVT+E SFNN   WI  +  H+   +   +LVGNK D
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTPGVLVGNKCD 121

Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR 175
           +   +R V  ++ QALA    +KF+ETSAK  +  E  F S+AR
Sbjct: 122 L-TDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSLAR 164

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score =  113 bits (284), Expect = 3e-31
 Identities = 62/205 (30%), Positives = 95/205 (46%), Gaps = 13/205 (6%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK-RIKLQIWDTAGQ 74
           IK++++GD   GK+ L+ RF+   F  S+  TIG+DF  R I L G   + LQ+WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW---IRNIEQHASDNVNKILVGNKAD 131
           +    +   Y  GA  + LVYD+T+  SF N+ +W   ++ + + +      +LVGNK D
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNKTD 120

Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR-----DIKQRLADTDS 186
           + E  R V   K    A E  ++    SAKT   V   F  IA       + Q   +   
Sbjct: 121 L-EHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAELLGVKLSQAELEQSQ 179

Query: 187 RAEPQTIKINQPDQAGGAAQAAQRS 211
           R   +       ++     +   RS
Sbjct: 180 RV-VKADVSRYSERT--LREPVSRS 201

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score =  111 bits (280), Expect = 3e-31
 Identities = 49/160 (30%), Positives = 86/160 (53%), Gaps = 4/160 (2%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R   G F   ++ T+G++        +  +I+  +WDTAGQE
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           +F  +   YY      ++++DVT   ++ N+ NW R++     +N+  +L GNK D+   
Sbjct: 61  KFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDI--K 117

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR 175
            R V   +      +  ++++E SAK+N N E+ F  +AR
Sbjct: 118 DRKVKPKQITFHR-KKNLQYYEISAKSNYNFEKPFLWLAR 156

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score =  110 bits (276), Expect = 2e-30
 Identities = 59/167 (35%), Positives = 90/167 (53%), Gaps = 15/167 (8%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+ FS   F   ++ T+  ++ +  IE+DGK+++L +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   ++ H   NV  ILVGNK D+  D
Sbjct: 62  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 120

Query: 134 ES---------KRAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
           E          +  V   +G+A+A++ G   + E SAKT   V EVF
Sbjct: 121 EHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVF 167

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score =  109 bits (274), Expect = 2e-30
 Identities = 50/158 (31%), Positives = 68/158 (43%), Gaps = 5/158 (3%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGS-FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           IK++++GD  VGKS LL R        T +      ++    IE DGK  K  + DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 75  ERFRTITTAYYRGAMGILLVYDVT--DESSFNNIRNWIRNIEQHASDNVNKILVGNKADM 132
           E +  I   YYR     L V+D+          +    + I  HA   V  ILVGNK  +
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNK--I 119

Query: 133 DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170
           D     + T      A   G      SA+T  N++  F
Sbjct: 120 DLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAF 157

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score =  109 bits (273), Expect = 1e-29
 Identities = 52/160 (32%), Positives = 88/160 (55%), Gaps = 4/160 (2%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD GVGK+  + R   G F   +I T+G++        +   I   +WDTAGQE
Sbjct: 10  FKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQE 69

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           +F  +   YY      ++++DVT   ++ N+ NW R+I +   +N+  +LVGNK D+ + 
Sbjct: 70  KFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVR-VCENIPIVLVGNKVDVKD- 127

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR 175
            R V   +      +  +++++ SAK+N N E+ F  +AR
Sbjct: 128 -RQVKARQIT-FHRKKNLQYYDISAKSNYNFEKPFLWLAR 165

Length = 215

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score =  107 bits (268), Expect = 2e-29
 Identities = 57/136 (41%), Positives = 83/136 (61%), Gaps = 1/136 (0%)

Query: 39  SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT 98
           +F  ++ +TIGIDF  +T+ LD   ++LQ+WDTAGQERFR++  +Y R +   ++VYD+T
Sbjct: 4   TFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDIT 63

Query: 99  DESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
           +  SF N   WI++I      +V   LVGNK D+ +  R V   +G   A EY   F ET
Sbjct: 64  NRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGD-LRKVTYEEGMQKAQEYNTMFHET 122

Query: 159 SAKTNLNVEEVFFSIA 174
           SAK   N++ +F  IA
Sbjct: 123 SAKAGHNIKVLFKKIA 138

Length = 176

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score =  105 bits (263), Expect = 1e-28
 Identities = 55/165 (33%), Positives = 89/165 (53%), Gaps = 3/165 (1%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K++++G  GVGKS + ++F   SF      TI   +K +   +D +   L I DTAGQ  
Sbjct: 4   KIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQ-ARIDNEPALLDILDTAGQAE 62

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDES 135
           F  +   Y R   G ++ Y VTD  SF     +   I +   ++++  +LVGNK D+ E 
Sbjct: 63  FTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRLTEDIPLVLVGNKVDL-EQ 121

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           +R V T +G+ LA E+   FFETSA     +++ F  + R+I+++
Sbjct: 122 QRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREIRRK 166

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score =  104 bits (262), Expect = 2e-28
 Identities = 55/168 (32%), Positives = 91/168 (54%), Gaps = 15/168 (8%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +K +L+GD  VGK+ L++ ++   + T ++ T   +F +  + +DGK ++LQ+ DTAGQ+
Sbjct: 1   LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVV-VLVDGKPVRLQLCDTAGQD 59

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADMDE 134
            F  +    Y      LL + V + SSF NI   WI  I +H +     ILVG +AD+  
Sbjct: 60  EFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKH-NPKAPIILVGTQADLRT 118

Query: 135 S-----------KRAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
                       ++ V  S+ +ALA++ G  ++ E SA T  N++EVF
Sbjct: 119 DVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score =  102 bits (255), Expect = 2e-27
 Identities = 51/155 (32%), Positives = 85/155 (54%), Gaps = 5/155 (3%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +K++L+GDS VGKS L+ RF    +    ++T  +       + +GK I +  WDTAGQE
Sbjct: 1   VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQE 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           RF+T+  +YY  A   +LV+DVT + ++ N+  W   + ++    +  I+V NK D+D S
Sbjct: 61  RFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREY-RPEIPCIVVANKIDLDPS 119

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170
                T K    A+++ +  +  SA    NV ++F
Sbjct: 120 V----TQKKFNFAEKHNLPLYYVSAADGTNVVKLF 150

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score =  101 bits (254), Expect = 2e-27
 Identities = 60/161 (37%), Positives = 86/161 (53%), Gaps = 7/161 (4%)

Query: 13  DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTA 72
           DY  ++++ G  GVGKS L+LRF  G+F  S+I TI   ++ + I        LQI DT 
Sbjct: 1   DY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCSKSICTLQITDTT 57

Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKI---LVGNK 129
           G  +F  +           +LVY +T + S   ++     I +   +N+ KI   LVGNK
Sbjct: 58  GSHQFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNK 117

Query: 130 ADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170
            D +   R V +S+G ALA  +   F ETSAKTN NV+E+F
Sbjct: 118 CD-ESPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELF 157

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score =  100 bits (250), Expect = 4e-26
 Identities = 60/167 (35%), Positives = 91/167 (54%), Gaps = 6/167 (3%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           +++L+GDSGVGKS L   F+ G +  S     G D   RT+ +DG+   L ++D   QE 
Sbjct: 2   RVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQED 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSF---NNIRNWIRNIEQHASDNVNKILVGNKADMD 133
              +  +  +     ++VY VTD SSF   + +R  +R   Q   +++  ILVGNK+D+ 
Sbjct: 62  GMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQA--EDIPIILVGNKSDLV 119

Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
            S R V   +G+A A  +  KF ETSA    NV+E+F  I R ++ R
Sbjct: 120 RS-REVSVQEGRACAVVFDCKFIETSAALQHNVDELFEGIVRQVRLR 165

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 97.5 bits (243), Expect = 2e-25
 Identities = 48/165 (29%), Positives = 88/165 (53%), Gaps = 6/165 (3%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +K+ L+GD+ +GK+ L++++ +G F   +I T+G++F  +TI + G  I   IWD  GQ 
Sbjct: 1   LKIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNK----AD 131
            F  +     + A+ IL ++D+T +S+ N+I+ W R      +     ILVG K    AD
Sbjct: 61  EFINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQARGF-NKTAIPILVGTKYDLFAD 119

Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF-FSIAR 175
           +   ++   T + +  A          S   ++NV+++F F +A+
Sbjct: 120 LPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKFVLAK 164

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 98.3 bits (245), Expect = 2e-25
 Identities = 52/177 (29%), Positives = 91/177 (51%), Gaps = 6/177 (3%)

Query: 1   MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
           MA P  +      +  KL+++GD G GK+  + R   G F   +  TIG++        +
Sbjct: 1   MALPNQQTVDYPSF--KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN 58

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
             +I+   WDTAGQE+F  +   YY      ++++DVT   ++ N+  W R++ +   +N
Sbjct: 59  CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCEN 117

Query: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
           +  +L GNK D+    R V  +K      +  ++++E SAK+N N E+ F  +AR +
Sbjct: 118 IPIVLCGNKVDVKN--RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171

Length = 219

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 93.0 bits (231), Expect = 8e-24
 Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 15/168 (8%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+ ++  +F   +I T+  D     + +DGK + L +WDTAGQE
Sbjct: 2   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   ILVG K D+ +
Sbjct: 61  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 119

Query: 135 SKRA-----------VPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
            K             +   +G A+A E G +K+ E SA T   ++ VF
Sbjct: 120 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 167

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 93.5 bits (232), Expect = 8e-24
 Identities = 51/197 (25%), Positives = 93/197 (47%), Gaps = 14/197 (7%)

Query: 21  IGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI 80
           +GD G GK+  + R   G F   ++ T+G++        +   I+  +WDTAGQE+F  +
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 81  TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVP 140
              YY      ++++DVT   ++ N+ NW R++ +   +N+  +L GNK D+ + K    
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKDRK---V 116

Query: 141 TSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI----------KQRLADTDSRAEP 190
            +K      +  +++++ SAK+N N E+ F  +AR +             LA  +   +P
Sbjct: 117 KAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDP 176

Query: 191 QTIKINQPDQAGGAAQA 207
                 + D    A  A
Sbjct: 177 ALAAQYEHDLEVAATTA 193

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 92.2 bits (229), Expect = 2e-23
 Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 13/165 (7%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+ LL  F+ G F   +  T+  +  +    +DGK ++L +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTV-FENYVTDCRVDGKPVQLALWDTAGQEE 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDE- 134
           +  +    Y  A  IL+ + +    S  N+R  WI  + ++   NV  ILVG K D+ + 
Sbjct: 62  YERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLRQE 120

Query: 135 --------SKRAVPTSKGQALADEYGIK-FFETSAKTNLNVEEVF 170
                   +   VP  + + +A   G K + E SA T   V++VF
Sbjct: 121 AVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVF 165

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 90.1 bits (223), Expect = 1e-22
 Identities = 53/175 (30%), Positives = 90/175 (51%), Gaps = 15/175 (8%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+ ++  +F   +I T+  ++  +T  +DG+ + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTA-VDGRTVSLNLWDTAGQE 62

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADMDE 134
            +  + T  Y      ++ + +   SS+ N+R+ W   +  H   NV  +LVG K D+  
Sbjct: 63  EYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCP-NVPILLVGTKKDLRN 121

Query: 135 SKRAV---------PTS--KGQALADEYG-IKFFETSAKTNLNVEEVFFSIARDI 177
               +         P +  +G ALA +   +K+ E SA     V+EVF    R +
Sbjct: 122 DADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAV 176

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 89.5 bits (222), Expect = 1e-22
 Identities = 56/166 (33%), Positives = 95/166 (57%), Gaps = 13/166 (7%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IK + +GD  VGK+C+L+ ++  +F T ++ T+  +F    + +DG  + L +WDTAGQE
Sbjct: 2   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQE 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMDE 134
            +  +    YRGA   LL + +  ++S+ N+ + WI  + +H +  V  +LVG K D+ +
Sbjct: 61  DYNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPEL-RHYAPGVPIVLVGTKLDLRD 119

Query: 135 SKR-------AVP--TSKGQALADEYGIK-FFETSAKTNLNVEEVF 170
            K+       AVP  T++G+ L  + G   + E S+KT  NV+ VF
Sbjct: 120 DKQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 165

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 87.1 bits (216), Expect = 3e-22
 Identities = 42/116 (36%), Positives = 60/116 (51%), Gaps = 4/116 (3%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K+++IGD G GKS LL +   G F    +   G    + T+E+DG    L IWD  G+E 
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFN---NIRNWIRNIEQHASDNVNKILVGNK 129
            +     + + A  ILLVYD+TD  S N    +  W+ N+ +     +  ILVGNK
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGG-KIPVILVGNK 115

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 85.3 bits (211), Expect = 1e-20
 Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 37/187 (19%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +K++L+GD  VGK+ LL R+ +  F  + ++T+G  F ++          + IWDTAG+E
Sbjct: 1   LKVVLLGDMNVGKTSLLHRYMERRFKDT-VSTVGGAFYLK----QWGPYNISIWDTAGRE 55

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           +F  + + Y RGA  ++L YDV++  S   + +    +   A+++    +VGNK D+ E 
Sbjct: 56  QFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEE 115

Query: 136 K------------------RAVPTSKGQALADEYGIK--------------FFETSAKTN 163
                              R V     +A                       FETSAKT 
Sbjct: 116 GALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTG 175

Query: 164 LNVEEVF 170
            NV+E+F
Sbjct: 176 YNVDELF 182

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 80.1 bits (198), Expect = 4e-19
 Identities = 40/165 (24%), Positives = 67/165 (40%), Gaps = 11/165 (6%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDF-KIRTIELDGKRIKLQIWDTAGQ 74
            KL+L+G  GVGK+ L  +     F     +T GI+    +    + K+I+L +WD  GQ
Sbjct: 2   AKLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQ 61

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           E +      +       LLV+D+      + +  W+R I+     +   ILVG   D   
Sbjct: 62  EIYHATHQFFLTSRSLYLLVFDLRTGDEVSRVPYWLRQIKAFGGVSP-VILVGTHIDESC 120

Query: 135 SKRAVPTSKGQALADEYG---IKFF-ETSAKTNLNVEEVFFSIAR 175
            +      K     ++     I      S K    + E+  +IA+
Sbjct: 121 DED--ILKK---ALNKKFPAIINDIHFVSCKNGKGIAELKKAIAK 160

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 80.3 bits (198), Expect = 7e-19
 Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 11/168 (6%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K++++GD   GK+ LL  F+ G F   +  T+  ++ I  I +DG  ++L +WDTAGQE 
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-IHDIFVDGLAVELSLWDTAGQEE 60

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADM--- 132
           F  + +  Y     I+L + V +  S  N+ + W+  I  H    V  +LV  K D+   
Sbjct: 61  FDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHC-PGVKLVLVALKCDLREP 119

Query: 133 ----DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVFFSIAR 175
               D     +   +G A+A      ++ E SAK N  V E F   AR
Sbjct: 120 RNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEAAR 167

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 78.2 bits (193), Expect = 3e-18
 Identities = 48/169 (28%), Positives = 92/169 (54%), Gaps = 16/169 (9%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            K++L+GDS  GK+ LL  F+  SF  +++ T+  ++   + E+D +RI+L +WDT+G  
Sbjct: 2   CKIVLVGDSQCGKTALLQVFAKDSFPENYVPTVFENYTA-SFEVDKQRIELSLWDTSGSP 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMDE 134
            +  +    Y  +  +L+ +D++   + +++ + W   + +    N   +LVG K+D+  
Sbjct: 61  YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFCP-NTPVLLVGCKSDLRT 119

Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFETSAKTN-LNVEEVF 170
                    +KR +P S  +G+ LA + G   + E SAKT+  +V +VF
Sbjct: 120 DLSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVF 168

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 76.8 bits (189), Expect = 1e-17
 Identities = 45/168 (26%), Positives = 83/168 (49%), Gaps = 15/168 (8%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+ ++   F + ++ T+  ++ + T+ + G+   L ++DTAGQE
Sbjct: 2   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDE 134
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+ +
Sbjct: 61  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 119

Query: 135 SK-----------RAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
                        + +    G+ LA +   +K+ E SA T   ++ VF
Sbjct: 120 DPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVF 167

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 76.6 bits (188), Expect = 1e-17
 Identities = 47/168 (27%), Positives = 90/168 (53%), Gaps = 15/168 (8%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +K +++GD  VGK+CLL+ +++ +F   ++ T+  D    ++ + GK+  L ++DTAGQE
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQE 59

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADM-- 132
            +  +    Y      L+ + V + +SF N++  W+  ++++A  NV  +L+G + D+  
Sbjct: 60  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPYLLIGTQIDLRD 118

Query: 133 ---------DESKRAVPTSKGQALADEYGIK-FFETSAKTNLNVEEVF 170
                    D  ++ +   +GQ LA E G   + E SA T   ++ VF
Sbjct: 119 DPKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVF 166

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 73.5 bits (181), Expect = 2e-16
 Identities = 56/165 (33%), Positives = 79/165 (47%), Gaps = 17/165 (10%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSF-----ITTIGIDFKIRTIELDGKRIKLQIWD 70
           ++++LIGD GVGKS L++      F  +        TI  D    T E    R+   I D
Sbjct: 3   VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADV---TPE----RVPTTIVD 55

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNK 129
           T+ + + R    A  R A  I LVY V   S+   IR  W+  I +     V  ILVGNK
Sbjct: 56  TSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNK 114

Query: 130 ADM-DESKRAVPTSKGQALADEYG--IKFFETSAKTNLNVEEVFF 171
           +D+ D S +A    +   + +E+       E SAKT +NV EVF+
Sbjct: 115 SDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 159

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 72.6 bits (179), Expect = 3e-16
 Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 8/157 (5%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           ++L++G  G GK+ +L +   G   T+ I TIG  F + T+E   K +K  +WD  GQ++
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEVVTT-IPTIG--FNVETVEY--KNVKFTVWDVGGQDK 55

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILV-GNKADMDES 135
            R +   YY    G++ V D +D       +N +  +          +L+  NK D+  +
Sbjct: 56  IRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILANKQDLPGA 115

Query: 136 KRAVPTSKGQALADEYGIKF--FETSAKTNLNVEEVF 170
                  +   L    G ++     SA T   ++E  
Sbjct: 116 LTESELIELLGLESIKGRRWHIQPCSAVTGDGLDEGL 152

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 73.3 bits (180), Expect = 3e-16
 Identities = 52/201 (25%), Positives = 91/201 (45%), Gaps = 11/201 (5%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           +L+ +G +GVGK+ L+ RF   +F      T+  +   +  E+ G ++ + I DT+G   
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVE-ELHSKEYEVAGVKVTIDILDTSGSYS 59

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILV-GNKADMDES 135
           F  +     +      LVY V D  SF  ++     I +   D    I+V GNK D   +
Sbjct: 60  FPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNKIDS-LA 118

Query: 136 KRAVPTSKGQALAD-EYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIK 194
           +R V  +   +  + ++   F E SAK N NV EVF    +++ Q+ A+  S   P   +
Sbjct: 119 ERQVEAADALSTVELDWNNGFVEASAKDNENVTEVF----KELLQQ-ANLPSWLSPALRR 173

Query: 195 INQ--PDQAGGAAQAAQRSAC 213
             +  P +        + ++C
Sbjct: 174 RRESAPSEIQRRPPMNKTNSC 194

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 71.7 bits (176), Expect = 3e-15
 Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 22/173 (12%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           +++++G S VGK+ ++ RF  G F   +  TI  DF  +   + G+  +L I DT+G   
Sbjct: 2   RMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHP 60

Query: 77  FR-----TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK-------- 123
           F      +I T    G +  +LV+ + +  SF  +      I +  S   NK        
Sbjct: 61  FPAMRRLSILT----GDV-FILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIP 115

Query: 124 -ILVGNKADMDESKRAVPTSK-GQALADEYGIKFFETSAKTNLNVEEVFFSIA 174
            ++ GNKAD D   R V   +  Q +  +    +FE SAK N N++E+F ++ 
Sbjct: 116 MVICGNKADRDFP-REVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALF 167

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 66.2 bits (161), Expect = 1e-13
 Identities = 43/171 (25%), Positives = 86/171 (50%), Gaps = 15/171 (8%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K++++GDS  GK+ LL  F+   F  +++ T+  ++   + E+D +RI+L +WDT+G   
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWDTSGSPY 65

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMD-- 133
           +  +    Y  +  +L+ +D++   + +++ + W   I++    N   +LVG K+D+   
Sbjct: 66  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTD 124

Query: 134 -------ESKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEEVFFSIA 174
                   + R  P S  +G  +A + G   + E SA  + N     F +A
Sbjct: 125 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 175

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 65.0 bits (158), Expect = 4e-13
 Identities = 55/194 (28%), Positives = 84/194 (43%), Gaps = 45/194 (23%)

Query: 15  LIKLLLIGDSGVGKSCLLL------RFSDGSFTTSFITTI-GIDFKIRTIEL-------- 59
            IK +++GD+ VGK+ L+         +      + + T+  ID      E+        
Sbjct: 2   TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVV 61

Query: 60  DGKRIKLQIWDTAG----QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIE 114
           DG  + L++WDT G      RF     AY R  + +LL + +   +S  N++  W   I 
Sbjct: 62  DGVSVSLRLWDTFGDHDKDRRF-----AYGRSDV-VLLCFSIASPNSLRNVKTMWYPEIR 115

Query: 115 QHASDNVNKILVGNKADM-----DESKRA-------------VPTSKGQALADEYGIKFF 156
                 V  ILVG K D+     DE  RA             +P   G+A+A E GI ++
Sbjct: 116 HFCPR-VPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYY 174

Query: 157 ETSAKTNLNVEEVF 170
           ETS  T   V++VF
Sbjct: 175 ETSVVTQFGVKDVF 188

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 64.7 bits (157), Expect = 7e-13
 Identities = 47/189 (24%), Positives = 94/189 (49%), Gaps = 20/189 (10%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K++++GD+  GK+ LL  F+  ++  S++ T+  ++   + E+D  RI+L +WDT+G   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENYTA-SFEIDKHRIELNMWDTSGSSY 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD--- 133
           +  +    Y  +  +L+ +D++   + +++    +   Q    N   +LVG K DM    
Sbjct: 62  YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKLVLVGCKLDMRTDL 121

Query: 134 ------ESKRAVPTS--KGQALADEYG-IKFFETSAKTNLN-VEEVFF-----SIARDIK 178
                   +R +P +  +G  LA + G + + E S++ + N V +VF      S+ R+  
Sbjct: 122 STLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSENSVRDVFHVTTLASVRREHP 181

Query: 179 QRLADTDSR 187
             L  + SR
Sbjct: 182 S-LKRSTSR 189

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 61.9 bits (150), Expect = 4e-12
 Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 6/124 (4%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G    GK+ +L +   G   T+ I TIG  F + T+    K I   +WD  GQ+
Sbjct: 14  MRILMVGLDAAGKTTILYKLKLGESVTT-IPTIG--FNVETVTY--KNISFTVWDVGGQD 68

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDNVNKILVGNKADMDE 134
           + R +   YY    G++ V D  D    +  R  + R + +    +   ++  NK D+ +
Sbjct: 69  KIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPD 128

Query: 135 SKRA 138
           + +A
Sbjct: 129 AMKA 132

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 58.9 bits (143), Expect = 5e-11
 Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 8/135 (5%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGS-FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           K++++G    GK+ +L +F  G    TS   TIG + +    E+  K I+  +WD  GQE
Sbjct: 17  KVIIVGLDNAGKTTILYQFLLGEVVHTS--PTIGSNVE----EIVYKNIRFLMWDIGGQE 70

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILV-GNKADMDE 134
             R+    YY     ++LV D TD       +  +  +  H       +LV  NK D+  
Sbjct: 71  SLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130

Query: 135 SKRAVPTSKGQALAD 149
           +      S+   L  
Sbjct: 131 AMTPAEISESLGLTS 145

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 57.4 bits (139), Expect = 1e-10
 Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 5/117 (4%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           ++LL+G    GKS LL +       T+ I T+G  F +  ++L+   + L +WD  GQE+
Sbjct: 1   QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVG--FNVEMLQLEKH-LSLTVWDVGGQEK 56

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADM 132
            RT+   Y     G++ V D +DE+  +  +  +++I ++     V  +L+ NK D+
Sbjct: 57  MRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDL 113

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 57.2 bits (138), Expect = 3e-10
 Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 29/165 (17%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-----DGKRIKLQIWD 70
           +K+L++GDSGVGKS L+          +   T+G    +R         + K   +++WD
Sbjct: 1   VKVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTPEEKTFYVELWD 60

Query: 71  TAGQ----ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI------------- 113
             G     E  ++    +Y    GI+ V+D+T++ S  N+  W                 
Sbjct: 61  VGGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLEALNRDTFPAGLLVT 120

Query: 114 ------EQHASDNVNKILVGNKADM-DESKRAVPTSKGQALADEY 151
                 EQ A + V  +++G K D   E+KR    ++   L++++
Sbjct: 121 NGDYDSEQFAGNPVPLLVIGTKLDQIPEAKRNWVLTRTAFLSEDF 165

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 55.8 bits (135), Expect = 5e-10
 Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 5/114 (4%)

Query: 20  LIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT 79
           L+G    GK+ L+   + G F+   I T+G  F +R +      IK  +WD  GQ RFR+
Sbjct: 4   LVGLQNSGKTTLVNVIASGQFSEDTIPTVG--FNMRKVTKGNVTIK--VWDLGGQPRFRS 59

Query: 80  ITTAYYRGAMGILLVYDVTDESSFNNIRNWIRN-IEQHASDNVNKILVGNKADM 132
           +   Y RG   I+ V D  D       +N + + +E+ + + +  +++GNK D+
Sbjct: 60  MWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGNKNDL 113

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 56.2 bits (135), Expect = 8e-10
 Identities = 41/187 (21%), Positives = 87/187 (46%), Gaps = 24/187 (12%)

Query: 2   AAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG 61
              P   R       KL+L+GD   GK+ +L   +   +  +++ T+  ++    +E + 
Sbjct: 6   NPQPLVVRC------KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-CLETEE 58

Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNN-IRNWIRNIEQHASDN 120
           +R++L +WDT+G   +  +    Y  +  +LL +D++    F++ ++ W   I  +   +
Sbjct: 59  QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCP-S 117

Query: 121 VNKILVGNKADM-----------DESKRAVPTSKGQALADEYGIK-FFETSAKTNLNVEE 168
              +L+G K D+           ++ +  +   +G A+A + G + + E SA T+   E+
Sbjct: 118 TRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTS---EK 174

Query: 169 VFFSIAR 175
              SI R
Sbjct: 175 SIHSIFR 181

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 54.5 bits (132), Expect = 2e-09
 Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 6/122 (4%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G    GK+ +L +   G   T+ I TIG  F + T+    K +K  +WD  GQE
Sbjct: 15  MRILILGLDNAGKTTILYKLKLGEIVTT-IPTIG--FNVETVTY--KNVKFTVWDVGGQE 69

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDE 134
             R +   Y+     ++ V D  D       +  +  +       +   +++ NK D+  
Sbjct: 70  SLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLPG 129

Query: 135 SK 136
           + 
Sbjct: 130 AM 131

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 35/142 (24%), Positives = 69/142 (48%), Gaps = 25/142 (17%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIR------------TIELDGKR 63
           +++L++GDSGVGKS L+     GS       TIG    ++            +I+ D +R
Sbjct: 22  VRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSER 81

Query: 64  -IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN-- 120
              +++WD +G ER++   + +Y    G++ V+D++   +  +++ W   +    + +  
Sbjct: 82  DFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAP 141

Query: 121 ----------VNKILVGNKADM 132
                     V  I++GNKAD+
Sbjct: 142 LGSGGPGGLPVPYIVIGNKADI 163

Length = 334

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 53.7 bits (129), Expect = 4e-09
 Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 6/118 (5%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G    GK+ +L +   G   T+ I TIG  F + T+E   K +K  +WD  GQ+
Sbjct: 18  VRILMVGLDAAGKTTILYKLKLGEVVTT-IPTIG--FNVETVEY--KNLKFTMWDVGGQD 72

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDNVNKILVGNKADM 132
           + R +   YY+   G++ V D  D     + R  + R + +    +   ++  NK D+
Sbjct: 73  KLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDL 130

Length = 182

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 53.2 bits (128), Expect = 4e-09
 Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 10/120 (8%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G    GK+ +L +   G   T+ I TIG  F + T+E   K I   +WD  GQ+
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 55

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI--EQHASDNVNKILV-GNKADM 132
           + R +   Y++   G++ V D  D       R  ++ +  E    D V  +LV  NK D+
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAV--LLVFANKQDL 113

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 50.9 bits (122), Expect = 3e-08
 Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 10/120 (8%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G    GK+ +L +   G   T+ I T+G  F + T+    K +K  +WD  GQ+
Sbjct: 10  MRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTY--KNVKFNVWDVGGQD 64

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI--EQHASDNVNKILV-GNKADM 132
           + R +   YY G  G++ V D  D    +  R  +  I  ++   D +  +LV  NK D+
Sbjct: 65  KIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDAL--LLVFANKQDL 122

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 51.1 bits (122), Expect = 4e-08
 Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 6/118 (5%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G    GK+ +L +   G   T+ I TIG  F + T+E   K I   +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 72

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDNVNKILVGNKADM 132
           + R +   Y++   G++ V D  D       R+ + R + +    +   ++  NK D+
Sbjct: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130

Length = 181

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 49.8 bits (119), Expect = 8e-08
 Identities = 46/167 (27%), Positives = 77/167 (46%), Gaps = 14/167 (8%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +KL ++G+   GKS L+ R+  GS+     +  G  FK + + +DG+   L I D  G  
Sbjct: 1   LKLGIVGNLRSGKSALVHRYLTGSYV-QLESPEGGRFK-KEVLVDGQSHLLLIRDEGGAP 58

Query: 76  --RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADM 132
             +F     A       ++ V+ + DE+SF  +      +  +     +  ILVG +  +
Sbjct: 59  DAQFAGWVDA-------VIFVFSLEDEASFQTVYRLYHQLSSYRNISEIPLILVGTQDAI 111

Query: 133 DESK-RAVPTSKGQAL-ADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
             S  R +  ++ + L AD     ++ET A   LNVE VF   A+ I
Sbjct: 112 SASNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQKI 158

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 10/156 (6%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           ++L++G  G GK+ +L R   G   T+ I TIG  F + T+    K +K Q+WD  GQ  
Sbjct: 1   RILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTY--KNLKFQVWDLGGQTS 55

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI--EQHASDNVNKILVGNKADMDE 134
            R     YY     I+ V D TD       ++ +  +  E+   D V  +   NK DM  
Sbjct: 56  IRPYWRCYYSNTDAIIYVVDSTDRDRLGISKSELHAMLEEEELKDAVLLVF-ANKQDMPG 114

Query: 135 SKRAVPTSKGQALADEYGIKF--FETSAKTNLNVEE 168
           +      ++   L++     +  F+TSA     ++E
Sbjct: 115 ALSEAEVAEKLGLSELKDRTWQIFKTSATKGEGLDE 150

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 5/88 (5%)

Query: 46  TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNN 105
            T+G++  I TIE+     +L  WD  GQE  R++   YY  + G++ V D TD   FN 
Sbjct: 37  PTVGLN--IGTIEVGK--ARLMFWDLGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNE 92

Query: 106 IRNWIRNIEQHAS-DNVNKILVGNKADM 132
            ++    +  + + + V  +++ NK D+
Sbjct: 93  SKSAFEKVINNEALEGVPLLVLANKQDL 120

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 32/143 (22%), Positives = 56/143 (39%), Gaps = 12/143 (8%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K++ +G    GK+ LL    D       + T+       + EL    +K   +D  G E+
Sbjct: 21  KIVFLGLDNAGKTTLLHMLKDDR-LAQHVPTLHPT----SEELTIGNVKFTTFDLGGHEQ 75

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKILVGNKADMDES 135
            R +   Y+    GI+ + D  D   F   +  + ++       NV  +++GNK D    
Sbjct: 76  ARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDEELANVPILILGNKIDK--- 132

Query: 136 KRAVPTSKGQALADEYGIKFFET 158
             AV   +   L +  G+    T
Sbjct: 133 PGAVSEEE---LREALGLYGTTT 152

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 48.6 bits (116), Expect = 3e-07
 Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 5/121 (4%)

Query: 18  LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDF-KIRTIELDGKRIKLQIWDTAGQER 76
           ++++G    GK+ +L R     F  + + T G +  KI+    + K +    WD  GQE+
Sbjct: 6   IVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNAKGVTFHFWDVGGQEK 64

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN--VNKILVGNKADMDE 134
            R +  +Y R   GI+ V D  D       +  +  I +  S+N  V  +++ NK D+  
Sbjct: 65  LRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITK-FSENQGVPVLVLANKQDLPN 123

Query: 135 S 135
           +
Sbjct: 124 A 124

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 47.5 bits (113), Expect = 8e-07
 Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 15/96 (15%)

Query: 16  IKLLLIGDSGVGKSCLL------------LRFSDGSFTTSFITTIGIDFKIRTIELDGKR 63
            K+++IG  G GK+  +               S  S      TT+ +DF   +IELD   
Sbjct: 11  TKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFG--SIELDEDT 68

Query: 64  IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD 99
             + ++ T GQERF+ +     RGA+G +++ D + 
Sbjct: 69  -GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSR 103

Length = 187

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 23/172 (13%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD----- 70
           +++ ++G  GVGK+ ++ +F    F   +I T         + L G+   L I D     
Sbjct: 1   VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60

Query: 71  ----TAGQE----RFRTITTAYYRGAMGILLVYDVTDESSFNN---IRNWIRNIEQHASD 119
               TAGQE    RFR +     R +   +LVYD+    SF+    +R  I       + 
Sbjct: 61  RYPGTAGQEWMDPRFRGL-----RNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNK 115

Query: 120 NVNKILVGNKADMDESKRAVPTSKGQALADE-YGIKFFETSAKTNLNVEEVF 170
               ++VGNK D  +  R  P      L  + +   + E SAK N ++  +F
Sbjct: 116 EPPIVVVGNKRDQ-QRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLF 166

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 45.4 bits (107), Expect = 3e-06
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 5/80 (6%)

Query: 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
          +++ +G  G GK+ +L +     F    I TIG  F + T+E   K +K  IWD  G+ +
Sbjct: 1  RVVTLGLDGAGKTTILFKLKQDEFMQP-IPTIG--FNVETVEY--KNLKFTIWDVGGKHK 55

Query: 77 FRTITTAYYRGAMGILLVYD 96
           R +   YY     ++ V D
Sbjct: 56 LRPLWKHYYLNTQAVVFVID 75

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206679 cd01892, Miro2, Mitochondrial Rho family 2 (Miro2), C-terminal

 Score = 44.5 bits (106), Expect = 6e-06
 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 5/118 (4%)

Query: 21  IGDSGVGKSCLLLRFSDGSFTTSFIT-TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT 79
           +G  G GKS LL  F   SF+ +  + TI   + + T+E+ G+  K  I    G++    
Sbjct: 10  LGAKGSGKSALLQAFLGRSFSQNAYSPTIKPRYAVNTVEVPGQE-KYLILREVGEDEEAI 68

Query: 80  ITTAYYRGAMGIL-LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK 136
           +       A  +  LVYD +D +SF+     +        + +  + V  KAD+DE +
Sbjct: 69  LLNDAELAACDVACLVYDSSDPNSFSYCAE-VYKKYFMLGE-IPCLFVAAKADLDEQQ 124

Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 180

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 26/98 (26%), Positives = 53/98 (54%), Gaps = 5/98 (5%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G    GK+ +L +F +G   ++   T+G  F I+T+E +G   KL IWD  GQ+
Sbjct: 15  MRILMLGLDNAGKTTILKKF-NGEDISTISPTLG--FNIKTLEYNG--YKLNIWDVGGQK 69

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI 113
             R+    Y+     ++ V D +D +   + +  ++ +
Sbjct: 70  SLRSYWRNYFESTDALIWVVDSSDRARLEDCKRELQKL 107

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 6/135 (4%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++LL+G    GK+ +L + +    +    T     F I+ ++ DG   KL +WD  GQ 
Sbjct: 16  VRILLLGLDNAGKTTILKQLASEDISHITPTQ---GFNIKNVQADG--FKLNVWDIGGQR 70

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKILVGNKADMDE 134
           + R     Y+     ++ V D  D   F      +  + E+     V  ++  NK D+  
Sbjct: 71  KIRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVLVFANKQDLLT 130

Query: 135 SKRAVPTSKGQALAD 149
           +  A   ++   L D
Sbjct: 131 AAPAEEVAEALNLHD 145

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|206684 cd01897, NOG, Nucleolar GTP-binding protein (NOG)

 Score = 42.2 bits (100), Expect = 4e-05
 Identities = 39/179 (21%), Positives = 65/179 (36%), Gaps = 50/179 (27%)

Query: 18  LLLIGDSGVGKSCLLLRFSDGS-------FTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           L++ G   VGKS L+ + +          FTT  +  +G        +    R   Q+ D
Sbjct: 3   LVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLF-VGH------FDYKYLRW--QVID 53

Query: 71  TAG------QER----FRTITT-AYYRGAMGILLVYDVTDESS---------FNNIRNWI 110
           T G      +ER     + IT  A+ R A  +L   D ++            F  I+   
Sbjct: 54  TPGILDRPLEERNTIEMQAITALAHLRAA--VLFFIDPSETCGYSIEEQLSLFKEIKPLF 111

Query: 111 RNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEV 169
                    N   I+V NK D+         S+ +   ++ G +  + S  T   V+E+
Sbjct: 112 ---------NKPVIVVLNKIDL---LTEEDLSEIEKELEKEGEEVIKISTLTEEGVDEL 158

NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. Length = 167

>gnl|CDD|233986 TIGR02729, Obg_CgtA, Obg family GTPase CgtA

 Score = 38.9 bits (92), Expect = 0.001
 Identities = 21/90 (23%), Positives = 46/90 (51%), Gaps = 7/90 (7%)

Query: 91  ILLVYDVTDESSFNNIRNW--IRN-IEQHASDNVNK--ILVGNKADMDESKRAVPTSKGQ 145
           +L + D++ E   + I ++  IRN +++++ +   K  I+V NK D+ + +        +
Sbjct: 239 LLHLIDISPEDGSDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEEL--EELLK 296

Query: 146 ALADEYGIKFFETSAKTNLNVEEVFFSIAR 175
            L +  G   F  SA T   ++E+ +++A 
Sbjct: 297 ELKEALGKPVFPISALTGEGLDELLYALAE 326

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal [Protein synthesis, Other]. Length = 329

>gnl|CDD|237046 PRK12297, obgE, GTPase CgtA; Reviewed

 Score = 38.9 bits (92), Expect = 0.001
 Identities = 14/56 (25%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 124 ILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 179
           I+V NK D+ E++  +     +   ++ G K F  SA T   ++E+ +++A  +++
Sbjct: 278 IVVANKMDLPEAEENL-----EEFKEKLGPKVFPISALTGQGLDELLYAVAELLEE 328

Length = 424

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 26/127 (20%), Positives = 58/127 (45%), Gaps = 10/127 (7%)

Query: 18  LLLIGDSGVGKSCLLLRFSDGSFTTSFIT-TIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           +L++G    GK+ ++ +    +  +  I  T+G  F + + +     +    +D +GQ +
Sbjct: 2   ILVLGLDNSGKTTIINQLKPSNAQSQNIVPTVG--FNVESFKKGN--LSFTAFDMSGQGK 57

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKIL----VGNKADM 132
           +R +   YY+   GI+ V D +D       ++ +  +  H  D  ++ +      NK D+
Sbjct: 58  YRGLWEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHP-DIKHRRIPILFYANKMDL 116

Query: 133 DESKRAV 139
            ++  AV
Sbjct: 117 PDALTAV 123

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 6/119 (5%)

Query: 18  LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 77
           LL +G    GK+ L+     G        T+G  F    + LD  + ++ I+D  G   F
Sbjct: 2   LLTVGLDNAGKTTLVSALQ-GEIPKKVAPTVG--FTPTKLRLD--KYEVCIFDLGGGANF 56

Query: 78  RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILV-GNKADMDES 135
           R I   YY  A G++ V D +D+     ++  +R + QH   +   ILV  NK D   +
Sbjct: 57  RGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNA 115

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score = 36.7 bits (85), Expect = 0.003
 Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 5/114 (4%)

Query: 18  LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 77
           +L++G  G GK+ LL   S      S + T G  F    I      ++L   +  G +  
Sbjct: 2   ILVLGLDGAGKTSLLHSLSSERSLESVVPTTG--FNSVAIPTQDAIMELL--EIGGSQNL 57

Query: 78  RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKAD 131
           R     Y  G+ G++ V D  D       R  +  + QH  D +  +++ NK D
Sbjct: 58  RKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPD-LPLVVLANKQD 110

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	216
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
PLN03108	210	Rab family protein; Provisional	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
PLN03118	211	Rab family protein; Provisional	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.98
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.98
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.98
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.98
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.98
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.97
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.97
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.97
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.97
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.97
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.97
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.97
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.97
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.97
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.97
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.97
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.97
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.97
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.97
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.97
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.97
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.97
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.97
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.96
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.96
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.96
PLN00223	181	ADP-ribosylation factor; Provisional	99.96
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.96
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.96
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.96
PTZ00133	182	ADP-ribosylation factor; Provisional	99.96
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.96
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.96
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.96
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.96
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.96
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.96
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.96
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.96
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.96
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.96
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.95
KOG0395	196	consensus Ras-related GTPase [General function pre	99.95
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.95
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.95
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.95
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.95
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.95
PTZ00099	176	rab6; Provisional	99.95
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.95
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.95
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.95
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.94
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.94
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.94
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.94
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.94
PRK12299	335	obgE GTPase CgtA; Reviewed	99.93
PLN00023	334	GTP-binding protein; Provisional	99.93
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.93
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.93
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.93
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.93
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.93
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.93
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.92
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.92
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.92
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.92
COG1100	219	GTPase SAR1 and related small G proteins [General	99.92
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.91
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.91
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.91
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.91
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.91
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.91
PRK04213	201	GTP-binding protein; Provisional	99.9
PRK12297	424	obgE GTPase CgtA; Reviewed	99.9
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.9
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.9
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.9
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.89
cd00881	189	GTP_translation_factor GTP translation factor fami	99.89
PRK12296	500	obgE GTPase CgtA; Reviewed	99.89
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.89
PRK15494	339	era GTPase Era; Provisional	99.89
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.89
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.89
PRK03003	472	GTP-binding protein Der; Reviewed	99.89
PRK03003	472	GTP-binding protein Der; Reviewed	99.89
KOG1673	205	consensus Ras GTPases [General function prediction	99.89
PRK11058	426	GTPase HflX; Provisional	99.89
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.88
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.88
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.88
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.87
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.87
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.87
PRK12298	390	obgE GTPase CgtA; Reviewed	99.87
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.86
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.86
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.86
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.86
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.86
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.86
PRK05306	787	infB translation initiation factor IF-2; Validated	99.85
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.85
CHL00189	742	infB translation initiation factor 2; Provisional	99.85
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.85
PRK00093	435	GTP-binding protein Der; Reviewed	99.85
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.85
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.85
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.85
PRK00093	435	GTP-binding protein Der; Reviewed	99.84
PRK00089	292	era GTPase Era; Reviewed	99.84
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.84
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.84
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.84
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.84
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.84
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.84
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.84
PRK05433	600	GTP-binding protein LepA; Provisional	99.83
COG1160	444	Predicted GTPases [General function prediction onl	99.83
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.83
COG2229	187	Predicted GTPase [General function prediction only	99.82
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.82
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.82
COG1159	298	Era GTPase [General function prediction only]	99.82
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.82
COG0486	454	ThdF Predicted GTPase [General function prediction	99.81
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.81
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.81
PRK12317	425	elongation factor 1-alpha; Reviewed	99.81
COG1160	444	Predicted GTPases [General function prediction onl	99.81
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.8
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.8
PRK10218	607	GTP-binding protein; Provisional	99.8
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.79
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.79
COG2262	411	HflX GTPases [General function prediction only]	99.79
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.78
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.78
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.78
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.78
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.77
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.76
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.76
PRK04004	586	translation initiation factor IF-2; Validated	99.76
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.76
COG0218	200	Predicted GTPase [General function prediction only	99.75
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.74
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.72
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.72
PRK12736	394	elongation factor Tu; Reviewed	99.72
COG1084	346	Predicted GTPase [General function prediction only	99.72
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.72
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.71
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.71
PRK12735	396	elongation factor Tu; Reviewed	99.71
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.7
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.7
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.7
CHL00071	409	tufA elongation factor Tu	99.7
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.69
COG0536	369	Obg Predicted GTPase [General function prediction	99.69
COG1163	365	DRG Predicted GTPase [General function prediction	99.68
PLN00043	447	elongation factor 1-alpha; Provisional	99.67
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.67
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.67
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.67
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.66
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.66
PTZ00141	446	elongation factor 1- alpha; Provisional	99.66
PRK00049	396	elongation factor Tu; Reviewed	99.66
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.66
PRK13351	687	elongation factor G; Reviewed	99.66
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.66
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.66
PLN03126	478	Elongation factor Tu; Provisional	99.65
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.64
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.64
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.63
KOG1145	683	consensus Mitochondrial translation initiation fac	99.63
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.63
COG3596	296	Predicted GTPase [General function prediction only	99.62
PLN03127	447	Elongation factor Tu; Provisional	99.62
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.61
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.61
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.6
PRK12739	691	elongation factor G; Reviewed	99.6
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.6
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.58
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.58
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.57
PRK09602	396	translation-associated GTPase; Reviewed	99.57
PRK00007	693	elongation factor G; Reviewed	99.56
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.55
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.55
PRK09866	741	hypothetical protein; Provisional	99.55
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.54
KOG0090	238	consensus Signal recognition particle receptor, be	99.53
PRK12740	668	elongation factor G; Reviewed	99.53
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.52
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.51
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.5
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.49
PRK14845	1049	translation initiation factor IF-2; Provisional	99.48
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.47
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.44
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.44
PRK13768	253	GTPase; Provisional	99.44
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.44
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.43
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.42
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.42
PTZ00258	390	GTP-binding protein; Provisional	99.4
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.4
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.39
PRK09601	364	GTP-binding protein YchF; Reviewed	99.39
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.38
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.37
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.37
PRK07560	731	elongation factor EF-2; Reviewed	99.36
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.34
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.33
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.33
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.33
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.32
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.32
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.31
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.3
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.3
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.29
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.27
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.27
PTZ00416	836	elongation factor 2; Provisional	99.25
KOG0410	410	consensus Predicted GTP binding protein [General f	99.25
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.24
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.23
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.22
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.2
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.18
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.17
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.17
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.17
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.16
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.16
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	99.15
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.13
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.12
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.11
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.09
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.08
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.02
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.96
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	98.95
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	98.95
PRK12289	352	GTPase RsgA; Reviewed	98.94
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	98.93
PRK12288	347	GTPase RsgA; Reviewed	98.92
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.92
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.91
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	98.91
PRK00098	298	GTPase RsgA; Reviewed	98.88
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.79
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.77
KOG3887	347	consensus Predicted small GTPase involved in nucle	98.76
KOG2486	320	consensus Predicted GTPase [General function predi	98.75
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.73
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.73
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.71
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.7
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.69
KOG1143	591	consensus Predicted translation elongation factor	98.69
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.66
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.64
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.63
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.63
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.59
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.59
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.58
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.56
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.55
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.53
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.52
COG1161	322	Predicted GTPases [General function prediction onl	98.52
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.51
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.48
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.47
PRK14974	336	cell division protein FtsY; Provisional	98.47
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.47
KOG0460	449	consensus Mitochondrial translation elongation fac	98.44
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.44
KOG4273	418	consensus Uncharacterized conserved protein [Funct	98.43
PRK10416	318	signal recognition particle-docking protein FtsY;	98.43
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.41
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.38
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.38
PRK12288	347	GTPase RsgA; Reviewed	98.36
PRK01889	356	GTPase RsgA; Reviewed	98.35
cd03112	158	CobW_like The function of this protein family is u	98.35
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.35
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.34
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.33
PRK13796	365	GTPase YqeH; Provisional	98.31
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.29
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.29
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.29
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.26
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.25
COG1162	301	Predicted GTPases [General function prediction onl	98.23
PRK12289	352	GTPase RsgA; Reviewed	98.23
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	98.23
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.23
COG1162	301	Predicted GTPases [General function prediction onl	98.21
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.2
PRK13796	365	GTPase YqeH; Provisional	98.2
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.2
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.18
COG3523	1188	IcmF Type VI protein secretion system component Va	98.16
PRK13695	174	putative NTPase; Provisional	98.15
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.12
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.09
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.05
COG0523	323	Putative GTPases (G3E family) [General function pr	98.02
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.02
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.01
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.01
PRK00098	298	GTPase RsgA; Reviewed	98.0
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.99
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	97.99
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.97
cd03114	148	ArgK-like The function of this protein family is u	97.95
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.93
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.93
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.91
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.88
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.87
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.85
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	97.83
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.83
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.81
TIGR00959	428	ffh signal recognition particle protein. This mode	97.78
PRK10867	433	signal recognition particle protein; Provisional	97.73
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.71
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.68
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.67
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.66
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.57
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.55
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.54
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.53
KOG2484	435	consensus GTPase [General function prediction only	97.52
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	97.5
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.47
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.45
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.45
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.44
PRK08118	167	topology modulation protein; Reviewed	97.43
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.42
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.41
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	97.41
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	97.41
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.4
PRK07261	171	topology modulation protein; Provisional	97.4
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.39
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.37
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.37
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.36
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.34
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.34
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.34
KOG1534	273	consensus Putative transcription factor FET5 [Tran	97.3
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.27
cd03111	106	CpaE_like This protein family consists of proteins	97.26
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.22
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.22
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.22
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.21
KOG3929	363	consensus Uncharacterized conserved protein [Funct	97.15
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.13
PRK14737	186	gmk guanylate kinase; Provisional	97.13
PRK06217	183	hypothetical protein; Validated	97.12
cd03110	179	Fer4_NifH_child This protein family's function is	97.09
cd02036	179	MinD Bacterial cell division requires the formatio	97.07
PF00004	132	AAA: ATPase family associated with various cellula	97.07
PRK03839	180	putative kinase; Provisional	97.07
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.06
PRK01889	356	GTPase RsgA; Reviewed	97.06
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.06
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.05
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.04
smart00382	148	AAA ATPases associated with a variety of cellular	97.03
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.02
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.02
PRK14738	206	gmk guanylate kinase; Provisional	97.01
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.01
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.01
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.01
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.01
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.0
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.99
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	96.98
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	96.98
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	96.97
KOG2423	572	consensus Nucleolar GTPase [General function predi	96.96
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	96.95
PRK14530	215	adenylate kinase; Provisional	96.94
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.93
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	96.91
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.9
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	96.9
PRK13949	169	shikimate kinase; Provisional	96.89
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.89
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	96.88
COG3638	258	ABC-type phosphate/phosphonate transport system, A	96.88
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	96.88
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	96.87
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	96.86
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	96.86
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	96.86
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	96.85
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	96.85
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	96.85
cd03269	210	ABC_putative_ATPase This subfamily is involved in	96.85
KOG0446	657	consensus Vacuolar sorting protein VPS1, dynamin,	96.84
PRK14531	183	adenylate kinase; Provisional	96.84
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	96.84
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	96.84

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-40  Score=238.01  Aligned_cols=188  Identities=59%  Similarity=1.017  Sum_probs=172.9

Q ss_pred             CCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027949            9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   88 (216)
Q Consensus         9 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   88 (216)
                      ....+|.+||+|+|.+|+|||.|+.++.+..+...+..|.+.++..+++..++..++++||||+|+++|+++...+|+++
T Consensus         3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a   82 (205)
T KOG0084|consen    3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA   82 (205)
T ss_pred             CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCe-EEEEecCCCCCHH
Q 027949           89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIK-FFETSAKTNLNVE  167 (216)
Q Consensus        89 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~  167 (216)
                      |++|+|||+++.++|..+..|+.++..+...+.|.++|+||+|+.+ .+.++.++++.|+..++++ ++++||+++.+++
T Consensus        83 hGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~-~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe  161 (205)
T KOG0084|consen   83 HGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTE-KRVVSTEEAQEFADELGIPIFLETSAKDSTNVE  161 (205)
T ss_pred             CeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHh-heecCHHHHHHHHHhcCCcceeecccCCccCHH
Confidence            9999999999999999999999999999999999999999999975 6789999999999999998 9999999999999


Q ss_pred             HHHHHHHHHHHHHhhcccCCC--CCccccccC
Q 027949          168 EVFFSIARDIKQRLADTDSRA--EPQTIKINQ  197 (216)
Q Consensus       168 ~l~~~l~~~i~~~~~~~~~~~--~~~~~~~~~  197 (216)
                      ++|..|...+.++........  +.+.++.+.
T Consensus       162 ~~F~~la~~lk~~~~~~~~~~~~~~~~~ql~~  193 (205)
T KOG0084|consen  162 DAFLTLAKELKQRKGLHVKWSTASLESVQLKG  193 (205)
T ss_pred             HHHHHHHHHHHHhcccCCCCCcCCCCceeeCC
Confidence            999999999988766655444  344444443

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.4e-38  Score=228.19  Aligned_cols=180  Identities=77%  Similarity=1.222  Sum_probs=171.2

Q ss_pred             CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027949           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      ..++.+||+++|.+|||||+++.++....+...+..+.+.++...++..++..+.+++|||+|+++++.+...|++.+++
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g   87 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG   87 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q 027949           91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF  170 (216)
Q Consensus        91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  170 (216)
                      +++|||+++..+|+.+..|+..+..+.+.+.|.++||||+|+.. .+.+..+.++.++.++|+.++++||++|.||++.|
T Consensus        88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~-~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF  166 (207)
T KOG0078|consen   88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEE-KRQVSKERGEALAREYGIKFFETSAKTNFNIEEAF  166 (207)
T ss_pred             eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccc-cccccHHHHHHHHHHhCCeEEEccccCCCCHHHHH
Confidence            99999999999999999999999999998999999999999965 78899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcccCCCCCc
Q 027949          171 FSIARDIKQRLADTDSRAEPQ  191 (216)
Q Consensus       171 ~~l~~~i~~~~~~~~~~~~~~  191 (216)
                      ..|.+.++++....+.+..++
T Consensus       167 ~~La~~i~~k~~~~~~~~~~~  187 (207)
T KOG0078|consen  167 LSLARDILQKLEDAELEASNN  187 (207)
T ss_pred             HHHHHHHHhhcchhhhccccc
Confidence            999999999877766555443

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.1e-38  Score=225.28  Aligned_cols=196  Identities=43%  Similarity=0.730  Sum_probs=172.2

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ...+||+|+|..++|||||+-++....|.....+|.+--+...++..++..+++.||||+|+++|..+.+.|+|+++++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            35699999999999999999999999999888999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS  172 (216)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  172 (216)
                      +|||+++.++|..++.|+..+.+..+++.-+.|||||+||.+ .+.+..+++..++...+..|+++||++|.|++++|..
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~-~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~  161 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLE-RREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQA  161 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhh-cccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHH
Confidence            999999999999999999999999887788888999999975 6789999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcccCCCCC--ccccccCCCCccchhhhccCCCCcC
Q 027949          173 IARDIKQRLADTDSRAEP--QTIKINQPDQAGGAAQAAQRSACCG  215 (216)
Q Consensus       173 l~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~c~  215 (216)
                      |.+.+.....+.......  .++...+.   +   +.+..++||.
T Consensus       162 Ia~~lp~~~~~~~~~~~~~~~g~~l~~~---~---~~~~~~~~C~  200 (200)
T KOG0092|consen  162 IAEKLPCSDPQERQGLPNRRQGVDLNSN---Q---EPARPSGCCA  200 (200)
T ss_pred             HHHhccCccccccccccccccceecccC---C---CCcCcCCcCC
Confidence            999999877666542222  22322222   1   4555667774

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.9e-37  Score=219.60  Aligned_cols=176  Identities=38%  Similarity=0.641  Sum_probs=161.2

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      -..+||+|+|..++||||||.+++...+...|.+|.+.++...++.+.++.+.+++|||+|+++|+.+...|++++.++|
T Consensus        20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav   99 (221)
T KOG0094|consen   20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   99 (221)
T ss_pred             ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence            34499999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHHhcCC-CCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q 027949           93 LVYDVTDESSFNNIRNWIRNIEQHASD-NVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFF  171 (216)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  171 (216)
                      +|||+++..+|+...+|+..+...+.. +.-+++|+||.||.+ .+.+..++....++++++.|+++||+.|+||.++|.
T Consensus       100 iVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~d-krqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFr  178 (221)
T KOG0094|consen  100 IVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSD-KRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFR  178 (221)
T ss_pred             EEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccc-hhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHH
Confidence            999999999999999999999887765 477788999999976 577888999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcccCCCC
Q 027949          172 SIARDIKQRLADTDSRAE  189 (216)
Q Consensus       172 ~l~~~i~~~~~~~~~~~~  189 (216)
                      .|...+......+....+
T Consensus       179 rIaa~l~~~~~~~~~~~~  196 (221)
T KOG0094|consen  179 RIAAALPGMEVLEILSKQ  196 (221)
T ss_pred             HHHHhccCcccccccccc
Confidence            988888877654444443

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=8.7e-37  Score=210.46  Aligned_cols=202  Identities=42%  Similarity=0.731  Sum_probs=173.2

Q ss_pred             CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027949           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      ...+.+||+++|.+|+|||||+-++....+......+.+.++....+.+++..+++.||||+|+++|+.+...|++.+.+
T Consensus         7 ~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqG   86 (209)
T KOG0080|consen    7 GYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQG   86 (209)
T ss_pred             CcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCce
Confidence            45677999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q 027949           91 ILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEV  169 (216)
Q Consensus        91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  169 (216)
                      +|+|||++.+++|..+..|++++..+.. ++.-.++|+||+|-.+ ++.++.++...|++++++-|+++||++.+|+...
T Consensus        87 iIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes-~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~  165 (209)
T KOG0080|consen   87 IILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES-ERVVDREEGLKFARKHRCLFIECSAKTRENVQCC  165 (209)
T ss_pred             eEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh-cccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence            9999999999999999999999988764 4566789999999643 6889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccCCCCCccccccCCCCccchhhhccCCCCcCC
Q 027949          170 FFSIARDIKQRLADTDSRAEPQTIKINQPDQAGGAAQAAQRSACCGS  216 (216)
Q Consensus       170 ~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~  216 (216)
                      |+.|++.|++-..--+......+..+-..+.....   ..+++||+|
T Consensus       166 FeelveKIi~tp~l~~~~n~~~~~~i~~~p~~~~~---~~~g~~Cs~  209 (209)
T KOG0080|consen  166 FEELVEKIIETPSLWEEGNSSAGLDIASDPDGEAS---AHQGGCCSC  209 (209)
T ss_pred             HHHHHHHHhcCcchhhccCCccccccccCCCcccc---cccCCccCC
Confidence            99999999986544443334444444432222111   234669987

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=2.3e-36  Score=227.05  Aligned_cols=195  Identities=34%  Similarity=0.675  Sum_probs=162.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEEC-CeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      +||+|+|.+|||||||+++|.+..+...+.++.+.++....+.++ +..+.+.+||++|++.+..++..+++++|++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999999888888888888877778887 7789999999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEecCCCCCHHHH
Q 027949           95 YDVTDESSFNNIRNWIRNIEQHA----SDNVNKILVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEEV  169 (216)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l  169 (216)
                      ||+++++++..+..|+..+....    ....|++||+||+|+.+ ......+++..++...+ +.++++||++|.|++++
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~  159 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKK-RLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEA  159 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccc-ccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHH
Confidence            99999999999999988876532    24689999999999964 35567788999999998 69999999999999999


Q ss_pred             HHHHHHHHHHHhhcccCCCCCccccccCCCCccchhhhccCCCCc
Q 027949          170 FFSIARDIKQRLADTDSRAEPQTIKINQPDQAGGAAQAAQRSACC  214 (216)
Q Consensus       170 ~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  214 (216)
                      |++|++.+...........++....+-...+   ..++++.++||
T Consensus       160 f~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  201 (201)
T cd04107         160 MRFLVKNILANDKNLQQAETPEDGSVIDLKQ---TTTKKKSKGCC  201 (201)
T ss_pred             HHHHHHHHHHhchhhHhhcCCCccccccccc---ceeccccCCCC
Confidence            9999999988766655555544333333322   33444555888

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=2.2e-35  Score=221.30  Aligned_cols=196  Identities=53%  Similarity=0.884  Sum_probs=162.5

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ++.++|+|+|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.|||+||++.+..++..++++++++|
T Consensus         4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii   83 (199)
T cd04110           4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI   83 (199)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence            45799999999999999999999999888788888887887788888888889999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS  172 (216)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  172 (216)
                      +|||+++++++..+..|+..+.... ...|++||+||+|+.+ ......+++..++...++.++++||++|.|++++|++
T Consensus        84 lv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~  161 (199)
T cd04110          84 VVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPE-RKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNC  161 (199)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHH
Confidence            9999999999999999999887654 3689999999999864 3445677788888888999999999999999999999


Q ss_pred             HHHHHHHHhhcccCCCCCccccccCCCCccchhhhccCCCCc
Q 027949          173 IARDIKQRLADTDSRAEPQTIKINQPDQAGGAAQAAQRSACC  214 (216)
Q Consensus       173 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  214 (216)
                      |.+.++....+...    ...++++.+..--+...+.++.||
T Consensus       162 l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  199 (199)
T cd04110         162 ITELVLRAKKDNLA----KQQQQQQNDVVKLPKNSKRKKRCC  199 (199)
T ss_pred             HHHHHHHhhhccCc----ccccCCccccCccchhccccccCC
Confidence            99999876444422    223333334444444445566676

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=2.2e-35  Score=220.84  Aligned_cols=167  Identities=45%  Similarity=0.894  Sum_probs=150.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +.|+|+|..|||||||++++....+...+.++.+.++....+.+++..+.+.+||++|++.|..++..+++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            36899999999999999999999998888888888888888999998999999999999999999999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh-CCeEEEEecCCCCCHHHHHHHHH
Q 027949           96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEEVFFSIA  174 (216)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~  174 (216)
                      |++++++|..+..|+..+......+.|++||+||+|+.+ .+.+...++..++..+ ++.|++|||++|.|++++|.+|+
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~-~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~  159 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET-DREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLV  159 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc-ccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHH
Confidence            999999999999999988777666799999999999964 4667778888888875 78999999999999999999999


Q ss_pred             HHHHHHhhc
Q 027949          175 RDIKQRLAD  183 (216)
Q Consensus       175 ~~i~~~~~~  183 (216)
                      +.+......
T Consensus       160 ~~~~~~~~~  168 (202)
T cd04120         160 DDILKKMPL  168 (202)
T ss_pred             HHHHHhCcc
Confidence            998775433

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=3.5e-35  Score=222.72  Aligned_cols=172  Identities=49%  Similarity=0.885  Sum_probs=155.1

Q ss_pred             CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027949           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      +.++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++.+++
T Consensus         8 ~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~   87 (216)
T PLN03110          8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG   87 (216)
T ss_pred             ccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCE
Confidence            35678999999999999999999999998887788888888888888899988999999999999999999999999999


Q ss_pred             EEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q 027949           91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF  170 (216)
Q Consensus        91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  170 (216)
                      +|+|||++++.++..+..|+..+......+.|+++|+||+|+.+ ......+++..++...+++++++||++|.|++++|
T Consensus        88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~-~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf  166 (216)
T PLN03110         88 ALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNH-LRSVAEEDGQALAEKEGLSFLETSALEATNVEKAF  166 (216)
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhccc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999998887666899999999999864 34566778888888889999999999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 027949          171 FSIARDIKQRLAD  183 (216)
Q Consensus       171 ~~l~~~i~~~~~~  183 (216)
                      ++|++.+.+....
T Consensus       167 ~~l~~~i~~~~~~  179 (216)
T PLN03110        167 QTILLEIYHIISK  179 (216)
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999886544

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-35  Score=214.25  Aligned_cols=176  Identities=49%  Similarity=0.867  Sum_probs=168.1

Q ss_pred             CCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027949            9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   88 (216)
Q Consensus         9 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   88 (216)
                      +.+.+|.+||+++|.+++|||-|+.++..++|.....+|.+.++....+.++++.++.+||||+|+++|+.....+++.+
T Consensus         8 ~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgA   87 (222)
T KOG0087|consen    8 SEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGA   87 (222)
T ss_pred             ccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccc
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHH
Q 027949           89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE  168 (216)
Q Consensus        89 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (216)
                      .++++|||++...+|+.+..|+.+++.+.+.++++++|+||+||.+ .+.+..++++.++...+..++++||.++.++++
T Consensus        88 vGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~-lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~  166 (222)
T KOG0087|consen   88 VGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNH-LRAVPTEDGKAFAEKEGLFFLETSALDATNVEK  166 (222)
T ss_pred             ceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhh-ccccchhhhHhHHHhcCceEEEecccccccHHH
Confidence            9999999999999999999999999999989999999999999976 788899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccc
Q 027949          169 VFFSIARDIKQRLADTD  185 (216)
Q Consensus       169 l~~~l~~~i~~~~~~~~  185 (216)
                      .|..++..|+....+..
T Consensus       167 aF~~~l~~I~~~vs~k~  183 (222)
T KOG0087|consen  167 AFERVLTEIYKIVSKKQ  183 (222)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999998776653

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=4.3e-35  Score=217.29  Aligned_cols=167  Identities=50%  Similarity=0.843  Sum_probs=151.7

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      .++.+||+|+|..|+|||||+.++....+...+.++.+.++....+.+++..+.+.+||++|++.|..++..+++++|++
T Consensus         3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i   82 (189)
T cd04121           3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI   82 (189)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence            35679999999999999999999999888877778888788778888899899999999999999999999999999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q 027949           92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFF  171 (216)
Q Consensus        92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  171 (216)
                      |+|||++++.+|..+..|+..+.... .+.|++||+||.|+.+ .+.+..++++.+++.+++.|++|||++|.|++++|+
T Consensus        83 llVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~-~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~  160 (189)
T cd04121          83 ILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAF-KRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFT  160 (189)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchh-ccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence            99999999999999999999997765 4799999999999965 456778899999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 027949          172 SIARDIKQR  180 (216)
Q Consensus       172 ~l~~~i~~~  180 (216)
                      +|++.+..+
T Consensus       161 ~l~~~i~~~  169 (189)
T cd04121         161 ELARIVLMR  169 (189)
T ss_pred             HHHHHHHHh
Confidence            999988754

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-35  Score=209.70  Aligned_cols=177  Identities=50%  Similarity=0.894  Sum_probs=166.5

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      ..+.+|++++|..|+|||.|+.+++.+.|.+.+..|.+.++-...+++++..++++||||+|++.|++....|++.+-++
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga   82 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA   82 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence            45779999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q 027949           92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFF  171 (216)
Q Consensus        92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  171 (216)
                      |+|||+++.++|..+..|+..+.+...++..++|++||+||.. .+++..++.+.|+++++..++++||++++|+++.|.
T Consensus        83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~-rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~  161 (216)
T KOG0098|consen   83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEA-RREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFI  161 (216)
T ss_pred             EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhc-cccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHH
Confidence            9999999999999999999999999888999999999999965 679999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcccCCCC
Q 027949          172 SIARDIKQRLADTDSRAE  189 (216)
Q Consensus       172 ~l~~~i~~~~~~~~~~~~  189 (216)
                      .+...+++.....-.+..
T Consensus       162 nta~~Iy~~~q~g~~~~~  179 (216)
T KOG0098|consen  162 NTAKEIYRKIQDGVFDDI  179 (216)
T ss_pred             HHHHHHHHHHHhcccccc
Confidence            999999998776544443

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=7.2e-36  Score=210.51  Aligned_cols=172  Identities=41%  Similarity=0.717  Sum_probs=159.4

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      +...+||+++|.+|+|||||++++.+.++...+..+.+.++....+.++++.++++||||+|+++|.++...|++.+|..
T Consensus         6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC   85 (210)
T KOG0394|consen    6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC   85 (210)
T ss_pred             cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence            34569999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCC-CccChHHHHHHHHHhC-CeEEEEecCCCCC
Q 027949           92 LLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKILVGNKADMDESK-RAVPTSKGQALADEYG-IKFFETSAKTNLN  165 (216)
Q Consensus        92 i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g  165 (216)
                      +++||++++.+|+.+..|..++..+..    ...|++|+|||+|+.+.. +.++...++.+|...| ++||++||+.+.+
T Consensus        86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~N  165 (210)
T KOG0394|consen   86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATN  165 (210)
T ss_pred             EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEeccccccc
Confidence            999999999999999999999877654    468999999999997633 7899999999999887 8999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhc
Q 027949          166 VEEVFFSIARDIKQRLAD  183 (216)
Q Consensus       166 i~~l~~~l~~~i~~~~~~  183 (216)
                      +++.|+.+.+.++..-..
T Consensus       166 V~~AFe~ia~~aL~~E~~  183 (210)
T KOG0394|consen  166 VDEAFEEIARRALANEDR  183 (210)
T ss_pred             HHHHHHHHHHHHHhccch
Confidence            999999999999887543

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=2.6e-34  Score=214.28  Aligned_cols=167  Identities=54%  Similarity=0.981  Sum_probs=147.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      +||+|+|.+|||||||++++.+..+. ..+.++.+.+.....+.+++..+.+.|||+||++.+...+..+++.+|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            58999999999999999999998875 35667777677666778888889999999999999988888999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q 027949           95 YDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA  174 (216)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  174 (216)
                      ||+++++++..+..|+..+......+.|+++|+||+|+.. .+....+++..++..++++|+++||++|.|++++|.+|.
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~-~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~  159 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSG-ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVA  159 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchh-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999999999998887666799999999999864 344566778888888899999999999999999999999


Q ss_pred             HHHHHHhhc
Q 027949          175 RDIKQRLAD  183 (216)
Q Consensus       175 ~~i~~~~~~  183 (216)
                      +.+.+...+
T Consensus       160 ~~~~~~~~~  168 (191)
T cd04112         160 KELKHRKYE  168 (191)
T ss_pred             HHHHHhccc
Confidence            999887544

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=2.4e-34  Score=217.54  Aligned_cols=188  Identities=31%  Similarity=0.552  Sum_probs=150.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+|+|.+|+|||||++++....+.. +.++.+.++....  +  ..+.+.|||++|++.+..++..+++++|++|+||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~--~--~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQ--W--GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEE--e--eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            589999999999999999999998864 4566554443322  2  3478999999999999999999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC------------------CCCccChHHHHHHHHHhC-----
Q 027949           96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE------------------SKRAVPTSKGQALADEYG-----  152 (216)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------------~~~~~~~~~~~~~~~~~~-----  152 (216)
                      |++++++|..+..|+..+......+.|++||+||+|+.+                  ..+.+..+++..++...+     
T Consensus        76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~  155 (220)
T cd04126          76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML  155 (220)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence            999999999999988877766556789999999999864                  145677889999998876     


Q ss_pred             ---------CeEEEEecCCCCCHHHHHHHHHHHHHHHhhcccCCCCCccccccCCCCccchhhhccCCCCc
Q 027949          153 ---------IKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIKINQPDQAGGAAQAAQRSACC  214 (216)
Q Consensus       153 ---------~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  214 (216)
                               ++|++|||++|.||+++|.++++.+++...+...+.....-.+..+      .-|+.|++||
T Consensus       156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  220 (220)
T cd04126         156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQGTVNLP------NPKRSKSKCC  220 (220)
T ss_pred             cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCC------CcccCCCCCC
Confidence                     6899999999999999999999999886666554333222222222      2456778888

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=2.3e-34  Score=214.20  Aligned_cols=166  Identities=40%  Similarity=0.658  Sum_probs=143.8

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..+||+|+|.+|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++|+
T Consensus         4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            348999999999999999999999888777777766444 4567788888999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949           94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS  172 (216)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  172 (216)
                      |||+++++++..+..|+..+.... ..+.|+++|+||+|+.+ ...+...++..++..++++++++||++|.|++++|.+
T Consensus        83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~-~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~  161 (189)
T PTZ00369         83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS-ERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE  161 (189)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence            999999999999999998887654 34789999999999854 3445667778888888899999999999999999999


Q ss_pred             HHHHHHHHh
Q 027949          173 IARDIKQRL  181 (216)
Q Consensus       173 l~~~i~~~~  181 (216)
                      |++.+.+..
T Consensus       162 l~~~l~~~~  170 (189)
T PTZ00369        162 LVREIRKYL  170 (189)
T ss_pred             HHHHHHHHh
Confidence            999887653

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=1.7e-34  Score=215.04  Aligned_cols=166  Identities=34%  Similarity=0.619  Sum_probs=142.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (216)
                      ||+|+|.+|+|||||+++|....+...+.++.+..+ ...+..++..+.+.+|||+|++.+..++..+++.+|++|+|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            589999999999999999999888776777765443 3456678888899999999999999999999999999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q 027949           97 VTDESSFNNIRNWIRNIEQHAS---DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI  173 (216)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  173 (216)
                      +++++++..+..|+..+.....   .+.|+++|+||+|+.+ ...+...+...++..++++++++||++|.|++++|.+|
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l  158 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY-EREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTL  158 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc-cCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHH
Confidence            9999999999999888866432   4689999999999864 34566677788888889999999999999999999999


Q ss_pred             HHHHHHHhhcc
Q 027949          174 ARDIKQRLADT  184 (216)
Q Consensus       174 ~~~i~~~~~~~  184 (216)
                      ++.+.+++...
T Consensus       159 ~~~l~~~~~~~  169 (190)
T cd04144         159 VRALRQQRQGG  169 (190)
T ss_pred             HHHHHHhhccc
Confidence            99888776664

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=8.3e-34  Score=214.38  Aligned_cols=170  Identities=45%  Similarity=0.808  Sum_probs=149.8

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEE-CCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      .+||+|+|.+|+|||||++++++..+...+.++.+.+.....+.+ ++..+.+.+||++|++.+..++..+++++|++|+
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            589999999999999999999999888777788887777777776 4667899999999999999989999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949           94 VYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS  172 (216)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  172 (216)
                      |||+++++++..+..|+..+..... ...|++||+||+|+.+ ...+..++...++..++++++++||++|.|++++|++
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~  160 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLES-QRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL  160 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccc-ccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence            9999999999999999998876543 3577899999999865 4556777888999999999999999999999999999


Q ss_pred             HHHHHHHHhhccc
Q 027949          173 IARDIKQRLADTD  185 (216)
Q Consensus       173 l~~~i~~~~~~~~  185 (216)
                      |.+.+.++.....
T Consensus       161 l~~~~~~~~~~~~  173 (211)
T cd04111         161 LTQEIYERIKRGE  173 (211)
T ss_pred             HHHHHHHHhhcCC
Confidence            9999988876654

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=7.5e-34  Score=207.21  Aligned_cols=164  Identities=48%  Similarity=0.862  Sum_probs=147.7

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+++|.+|+|||||++++....+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            48999999999999999999999998887888877777777788888889999999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q 027949           95 YDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA  174 (216)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  174 (216)
                      ||+++++++..+..|+..+......+.|+++|+||+|+.+ ......+++..++...+++++++||++|.|++++|.++.
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~  160 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEA-QRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETA  160 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999999888776656789999999999965 345677888889998899999999999999999999999


Q ss_pred             HHHHH
Q 027949          175 RDIKQ  179 (216)
Q Consensus       175 ~~i~~  179 (216)
                      +.+.+
T Consensus       161 ~~~~~  165 (166)
T cd04122         161 KKIYQ  165 (166)
T ss_pred             HHHhh
Confidence            88754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=9.3e-34  Score=206.94  Aligned_cols=165  Identities=79%  Similarity=1.280  Sum_probs=149.6

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      +.+||+|+|++|+|||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|++.+...+..+++++|++|+
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            56999999999999999999999999988888888888877888888888999999999999988888899999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q 027949           94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI  173 (216)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  173 (216)
                      |||+++++++..+..|+..+......+.|+++|+||+|+.+ ......+++..++...+++++++||++|.|++++|.+|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  160 (167)
T cd01867          82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEE-KRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL  160 (167)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999998876666799999999999975 34556777888888889999999999999999999999


Q ss_pred             HHHHHH
Q 027949          174 ARDIKQ  179 (216)
Q Consensus       174 ~~~i~~  179 (216)
                      .+.+..
T Consensus       161 ~~~~~~  166 (167)
T cd01867         161 AKDIKK  166 (167)
T ss_pred             HHHHHh
Confidence            998865

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=5e-35  Score=199.14  Aligned_cols=168  Identities=58%  Similarity=0.988  Sum_probs=159.6

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      ....++.+|+|.+|+|||+|+.++....|...|..+.+.+...+++.++|..+++.|||++|++.|+.+...+++..+++
T Consensus         5 ~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv   84 (198)
T KOG0079|consen    5 YDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGV   84 (198)
T ss_pred             HHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceE
Confidence            45668899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q 027949           92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFF  171 (216)
Q Consensus        92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  171 (216)
                      |+|||+++.++|..+..|+..+...++ ..|-++|+||.|.++ .+.+..++++.|+...++.+|++||+++++++..|.
T Consensus        85 ~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~-RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~  162 (198)
T KOG0079|consen   85 IVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPE-RRVVDTEDARAFALQMGIELFETSAKENENVEAMFH  162 (198)
T ss_pred             EEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCcc-ceeeehHHHHHHHHhcCchheehhhhhcccchHHHH
Confidence            999999999999999999999999887 689999999999865 778899999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 027949          172 SIARDIKQRL  181 (216)
Q Consensus       172 ~l~~~i~~~~  181 (216)
                      -|.+.+.+..
T Consensus       163 cit~qvl~~k  172 (198)
T KOG0079|consen  163 CITKQVLQAK  172 (198)
T ss_pred             HHHHHHHHHH
Confidence            9999998865

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=2.1e-33  Score=208.88  Aligned_cols=169  Identities=50%  Similarity=0.860  Sum_probs=150.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+|+|.+|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++++|++|+||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999999988778888887887788888888899999999999999989999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q 027949           96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR  175 (216)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  175 (216)
                      |+++++++..+..|+..+........|+++|+||+|+.+ ...+..+.+..++...+++++++||++|.|++++|.+|++
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~  159 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVN-NKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVK  159 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcc-cccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            999999999999999998877666789999999999864 3456677788888888899999999999999999999999


Q ss_pred             HHHHHhhccc
Q 027949          176 DIKQRLADTD  185 (216)
Q Consensus       176 ~i~~~~~~~~  185 (216)
                      .+..+...+.
T Consensus       160 ~~~~~~~~~~  169 (188)
T cd04125         160 LIIKRLEEQE  169 (188)
T ss_pred             HHHHHhhcCc
Confidence            9987655544

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=2.7e-33  Score=209.10  Aligned_cols=168  Identities=35%  Similarity=0.645  Sum_probs=144.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCC-ccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      +||+|+|.+|+|||||++++....+.. .+.++.+..+....+..++..+.+.+||++|.+.+..++..+++++|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999988864 5777777767677788899889999999999999998888899999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC---CccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q 027949           95 YDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK---RAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFF  171 (216)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  171 (216)
                      ||++++.++..+..|+..+.... .+.|+++|+||+|+.+..   ..+...++..++...+++++++||++|.|++++|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  159 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ  159 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999988998886653 368999999999985422   33445667788888889999999999999999999


Q ss_pred             HHHHHHHHHhhcc
Q 027949          172 SIARDIKQRLADT  184 (216)
Q Consensus       172 ~l~~~i~~~~~~~  184 (216)
                      +|.+.+.+.....
T Consensus       160 ~i~~~~~~~~~~~  172 (193)
T cd04118         160 KVAEDFVSRANNQ  172 (193)
T ss_pred             HHHHHHHHhcccc
Confidence            9999998765544

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=1.3e-33  Score=208.38  Aligned_cols=165  Identities=25%  Similarity=0.551  Sum_probs=146.2

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ...+||+++|.+|+|||||++++....+...+.|+.+..+ ...+..++..+.+.||||+|++.|..++..+++++|++|
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i   81 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   81 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence            4568999999999999999999999999888888887544 456788898999999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhCC-eEEEEe
Q 027949           93 LVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETS  159 (216)
Q Consensus        93 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~S  159 (216)
                      +|||++++.+|..+ ..|+..+....+ +.|++||+||+||.+.           .+.+..+++..++..+++ +|++||
T Consensus        82 lvyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S  160 (182)
T cd04172          82 ICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS  160 (182)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence            99999999999997 789999887654 6999999999998542           245788999999999995 999999


Q ss_pred             cCCCCC-HHHHHHHHHHHHHH
Q 027949          160 AKTNLN-VEEVFFSIARDIKQ  179 (216)
Q Consensus       160 a~~~~g-i~~l~~~l~~~i~~  179 (216)
                      |++|+| |+++|..+++.++.
T Consensus       161 Ak~~~n~v~~~F~~~~~~~~~  181 (182)
T cd04172         161 ALQSENSVRDIFHVATLACVN  181 (182)
T ss_pred             cCCCCCCHHHHHHHHHHHHhc
Confidence            999998 99999999987543

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=4.6e-33  Score=210.29  Aligned_cols=177  Identities=50%  Similarity=0.868  Sum_probs=155.0

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      .++.+||+|+|++|+|||||+++|+...+...+.++.+.++....+.+++..+.+.+||++|.+.+..++..+++.+|++
T Consensus         3 ~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~   82 (210)
T PLN03108          3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence            35679999999999999999999999988877778888788778888888888999999999999988889999999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q 027949           92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFF  171 (216)
Q Consensus        92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  171 (216)
                      |+|||+++++++..+..|+..+........|+++|+||+|+.+ ......++...+++.++++++++||+++.|++++|.
T Consensus        83 vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~  161 (210)
T PLN03108         83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH-RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI  161 (210)
T ss_pred             EEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999999999888766556799999999999865 345677888899999999999999999999999999


Q ss_pred             HHHHHHHHHhhcccCCCC
Q 027949          172 SIARDIKQRLADTDSRAE  189 (216)
Q Consensus       172 ~l~~~i~~~~~~~~~~~~  189 (216)
                      ++++.++++..+...+..
T Consensus       162 ~l~~~~~~~~~~~~~~~~  179 (210)
T PLN03108        162 KTAAKIYKKIQDGVFDVS  179 (210)
T ss_pred             HHHHHHHHHhhhcccccc
Confidence            999999886554443333

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.3e-34  Score=194.34  Aligned_cols=176  Identities=53%  Similarity=0.959  Sum_probs=165.4

Q ss_pred             CCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027949            9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   88 (216)
Q Consensus         9 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   88 (216)
                      ..+.++.+|++|+|...+|||||+.++++..+...+..+.+.++...++.-....+++++|||.|++.|+.+...+++++
T Consensus        15 dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRga   94 (193)
T KOG0093|consen   15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGA   94 (193)
T ss_pred             cccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhcc
Confidence            34677889999999999999999999999999999999999999999988888889999999999999999999999999


Q ss_pred             cEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHH
Q 027949           89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE  168 (216)
Q Consensus        89 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (216)
                      +++|++||+++.++|..+..|...+..++-.+.|+++|+||+|+.+ ++.+..+..+.++.++|..||++||+.+.++++
T Consensus        95 mgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~-eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~  173 (193)
T KOG0093|consen   95 MGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDS-ERVISHERGRQLADQLGFEFFETSAKENINVKQ  173 (193)
T ss_pred             ceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCcc-ceeeeHHHHHHHHHHhChHHhhhcccccccHHH
Confidence            9999999999999999999999999988888999999999999965 688899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccc
Q 027949          169 VFFSIARDIKQRLADTD  185 (216)
Q Consensus       169 l~~~l~~~i~~~~~~~~  185 (216)
                      +|+.++..+.+...++.
T Consensus       174 ~Fe~lv~~Ic~kmsesl  190 (193)
T KOG0093|consen  174 VFERLVDIICDKMSESL  190 (193)
T ss_pred             HHHHHHHHHHHHhhhhh
Confidence            99999999998877654

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=2.7e-33  Score=212.42  Aligned_cols=164  Identities=34%  Similarity=0.573  Sum_probs=146.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECC-eEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG-KRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      +||+|+|.+|||||||+++|.+..+...+.++.+.+.....+.+++ ..+.+.|||++|++.+..++..+++++|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999999888889998888888888754 468999999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q 027949           95 YDVTDESSFNNIRNWIRNIEQHAS---DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFF  171 (216)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  171 (216)
                      ||+++++++..+..|+..+.....   .+.|+++|+||+|+.+ .+.+..+....++..++++++++||++|+|++++|+
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~-~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~  159 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEH-NRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQ  159 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence            999999999999999998877643   3468999999999964 355677788899999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 027949          172 SIARDIKQR  180 (216)
Q Consensus       172 ~l~~~i~~~  180 (216)
                      +|++.+...
T Consensus       160 ~l~~~l~~~  168 (215)
T cd04109         160 QLAAELLGV  168 (215)
T ss_pred             HHHHHHHhc
Confidence            999998875

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=3e-33  Score=205.27  Aligned_cols=160  Identities=33%  Similarity=0.675  Sum_probs=142.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+++|.+|+|||+|+.++..+.+...+.++.+..+ ...+..++..+.+.||||+|+++|..+...+++++|++|+||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            7999999999999999999999999888888887554 455778888899999999999999999999999999999999


Q ss_pred             eCCCHhHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCC---------CccChHHHHHHHHHhCC-eEEEEecCCCC
Q 027949           96 DVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMDESK---------RAVPTSKGQALADEYGI-KFFETSAKTNL  164 (216)
Q Consensus        96 d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~---------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  164 (216)
                      |++++++|..+ ..|+..+..... +.|++||+||+|+.+..         ..+..+++..+++.+++ .|++|||++|.
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~  159 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYAP-NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ  159 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence            99999999998 689998876654 79999999999995432         24778899999999997 69999999999


Q ss_pred             CHHHHHHHHHHHH
Q 027949          165 NVEEVFFSIARDI  177 (216)
Q Consensus       165 gi~~l~~~l~~~i  177 (216)
                      ||+++|..+++.+
T Consensus       160 nV~~~F~~~~~~~  172 (176)
T cd04133         160 NVKAVFDAAIKVV  172 (176)
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999999876

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=3.3e-33  Score=204.93  Aligned_cols=165  Identities=32%  Similarity=0.586  Sum_probs=145.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+|+|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||++|.+.+..++..+++.+|++|+||
T Consensus         3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~   81 (172)
T cd04141           3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY   81 (172)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence            7999999999999999999999998877777776434 445778888899999999999999999999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q 027949           96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA  174 (216)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  174 (216)
                      |++++.++..+..|+..+.+.. ..+.|+++|+||+|+.+ ...+..++...+++..+++|++|||++|.|++++|+||+
T Consensus        82 d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~-~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~  160 (172)
T cd04141          82 SVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLES-QRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV  160 (172)
T ss_pred             ECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhh-cCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence            9999999999999888777643 35799999999999865 355677888899999999999999999999999999999


Q ss_pred             HHHHHHhh
Q 027949          175 RDIKQRLA  182 (216)
Q Consensus       175 ~~i~~~~~  182 (216)
                      +.+.+..+
T Consensus       161 ~~~~~~~~  168 (172)
T cd04141         161 REIRRKES  168 (172)
T ss_pred             HHHHHhcc
Confidence            98887543

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=8.1e-33  Score=210.36  Aligned_cols=166  Identities=22%  Similarity=0.475  Sum_probs=147.3

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ...+||+|+|..|||||+|++++....+...+.++.+..+. ..+..++..+.+.||||+|++.|..+...+++++|++|
T Consensus        11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI   89 (232)
T cd04174          11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL   89 (232)
T ss_pred             eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence            35689999999999999999999999999888888875553 45788899999999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhCC-eEEEEe
Q 027949           93 LVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETS  159 (216)
Q Consensus        93 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~S  159 (216)
                      +|||++++++|..+ ..|+..+....+ +.|++||+||+||.+.           ...+..++++.++..+++ .|++||
T Consensus        90 lVyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtS  168 (232)
T cd04174          90 LCFDISRPETVDSALKKWKAEIMDYCP-STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECS  168 (232)
T ss_pred             EEEECCChHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEcc
Confidence            99999999999985 789998887654 6899999999998542           256788899999999998 699999


Q ss_pred             cCCCC-CHHHHHHHHHHHHHHH
Q 027949          160 AKTNL-NVEEVFFSIARDIKQR  180 (216)
Q Consensus       160 a~~~~-gi~~l~~~l~~~i~~~  180 (216)
                      |++|+ |++++|..++..+++.
T Consensus       169 Aktg~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         169 AFTSEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             CCcCCcCHHHHHHHHHHHHHHh
Confidence            99998 8999999999998875

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=5.7e-33  Score=202.39  Aligned_cols=163  Identities=55%  Similarity=0.963  Sum_probs=145.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+|+|.+|||||||++++.+..+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++++|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999988878888887777777777888899999999999999999999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q 027949           96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR  175 (216)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  175 (216)
                      |+++++++..+..|+..+........|+++|+||+|+.+ .+....+....++..++++++++||++|.|++++|++|++
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMED-ERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVD  160 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCc-ccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            999999999999999998776656789999999999965 3445667778888888999999999999999999999998


Q ss_pred             HHHH
Q 027949          176 DIKQ  179 (216)
Q Consensus       176 ~i~~  179 (216)
                      .+..
T Consensus       161 ~~~~  164 (165)
T cd01865         161 IICD  164 (165)
T ss_pred             HHHh
Confidence            7653

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=5.6e-33  Score=202.55  Aligned_cols=164  Identities=68%  Similarity=1.125  Sum_probs=147.3

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+|+|++|+|||||++++.+..+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|++|+|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            58999999999999999999999988877888888778778888888889999999999999988899999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q 027949           95 YDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA  174 (216)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  174 (216)
                      ||+++++++..+..|+..+......+.|+++|+||+|+.+ ......+++..++...+++++++||++|.|++++|.+|.
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  160 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTD-KRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMA  160 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhccc-ccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHH
Confidence            9999999999999999998776655789999999999864 344667788889988899999999999999999999999


Q ss_pred             HHHHH
Q 027949          175 RDIKQ  179 (216)
Q Consensus       175 ~~i~~  179 (216)
                      +.+.+
T Consensus       161 ~~~~~  165 (166)
T cd01869         161 REIKK  165 (166)
T ss_pred             HHHHh
Confidence            88753

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=7e-33  Score=206.45  Aligned_cols=163  Identities=31%  Similarity=0.618  Sum_probs=141.5

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+++|..|+|||||+.++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.|..++..+++++|++|+|
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            38999999999999999999999999888888887544 34567788889999999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhC-CeEEEEecC
Q 027949           95 YDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESK-----------RAVPTSKGQALADEYG-IKFFETSAK  161 (216)
Q Consensus        95 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~~Sa~  161 (216)
                      ||++++++|+.+. .|+..+.... .+.|++||+||.||.+..           ..+..+++..++..++ +.|+++||+
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk  160 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence            9999999999997 5887776654 479999999999996432           2355678888999888 699999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 027949          162 TNLNVEEVFFSIARDIKQ  179 (216)
Q Consensus       162 ~~~gi~~l~~~l~~~i~~  179 (216)
                      +|+|++++|.+|++.+..
T Consensus       161 ~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         161 NQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             CCCCHHHHHHHHHHHHhc
Confidence            999999999999988754

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=5.5e-33  Score=204.55  Aligned_cols=162  Identities=25%  Similarity=0.545  Sum_probs=143.1

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      ++||+++|.+|+|||||++++....+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..+...+++++|++|+|
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv   79 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC   79 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence            37999999999999999999999999888888876554 35678888899999999999999999999999999999999


Q ss_pred             EeCCCHhHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhCC-eEEEEecC
Q 027949           95 YDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETSAK  161 (216)
Q Consensus        95 ~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~  161 (216)
                      ||++++++|..+ ..|+..+....+ ..|+++|+||+||.+.           ...+..+++..++..+++ .|++|||+
T Consensus        80 fdit~~~Sf~~~~~~w~~~i~~~~~-~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~  158 (178)
T cd04131          80 FDISRPETLDSVLKKWRGEIQEFCP-NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF  158 (178)
T ss_pred             EECCChhhHHHHHHHHHHHHHHHCC-CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence            999999999996 789998887764 7899999999999541           235788899999999997 89999999


Q ss_pred             CCCC-HHHHHHHHHHHHH
Q 027949          162 TNLN-VEEVFFSIARDIK  178 (216)
Q Consensus       162 ~~~g-i~~l~~~l~~~i~  178 (216)
                      +|++ ++++|..+++..+
T Consensus       159 ~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         159 TSEKSVRDIFHVATMACL  176 (178)
T ss_pred             cCCcCHHHHHHHHHHHHh
Confidence            9995 9999999998654

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.3e-34  Score=193.37  Aligned_cols=173  Identities=47%  Similarity=0.874  Sum_probs=160.5

Q ss_pred             CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027949           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (216)
                      +..++.+||+++|+.|+|||.|++++...-+++....+.+.++...+++++++.+++.||||.|+++|+++...+++.++
T Consensus         2 edykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsah   81 (213)
T KOG0095|consen    2 EDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAH   81 (213)
T ss_pred             cccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcc
Confidence            45678999999999999999999999999999888899999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q 027949           90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEV  169 (216)
Q Consensus        90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  169 (216)
                      ++|+|||++...+|+-+..|+.++.++.....-.++|+||.|+.+ ++++..+..++|+.....-|+++||++.++++.+
T Consensus        82 alilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~d-rrevp~qigeefs~~qdmyfletsakea~nve~l  160 (213)
T KOG0095|consen   82 ALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLAD-RREVPQQIGEEFSEAQDMYFLETSAKEADNVEKL  160 (213)
T ss_pred             eEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhh-hhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHH
Confidence            999999999999999999999999999877777799999999864 5678888899999998899999999999999999


Q ss_pred             HHHHHHHHHHHhhc
Q 027949          170 FFSIARDIKQRLAD  183 (216)
Q Consensus       170 ~~~l~~~i~~~~~~  183 (216)
                      |..+.-.+......
T Consensus       161 f~~~a~rli~~ar~  174 (213)
T KOG0095|consen  161 FLDLACRLISEARQ  174 (213)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99998888775444

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=6.8e-33  Score=201.21  Aligned_cols=160  Identities=55%  Similarity=0.983  Sum_probs=144.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      ++|+|+|++|+|||||++++..+.+...+.++.+.++....+..++..+.+.+||++|.+.+..++..+++++|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            48999999999999999999999998888888888887788888888899999999999999988999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q 027949           96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR  175 (216)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  175 (216)
                      |+++++++..+..|+..+........|+++|+||.|+.+ .+.+..+++..+++..+++|+++||++|.|++++|.+|.+
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~  159 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQ-KRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTE  159 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHh
Confidence            999999999999999988776655799999999999854 4556678888999888999999999999999999999986


Q ss_pred             H
Q 027949          176 D  176 (216)
Q Consensus       176 ~  176 (216)
                      .
T Consensus       160 ~  160 (161)
T cd04117         160 L  160 (161)
T ss_pred             h
Confidence            4

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=7.7e-33  Score=204.56  Aligned_cols=163  Identities=28%  Similarity=0.561  Sum_probs=142.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+++|..|+|||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999998888899888887788888998899999999999999999999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC----CCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q 027949           96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES----KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFF  171 (216)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  171 (216)
                      |+++++++..+..|+..+........| ++|+||+|+.+.    ......++...++...+++++++||++|.|++++|.
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~  159 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK  159 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999988776554566 678999998531    112224567778888889999999999999999999


Q ss_pred             HHHHHHHH
Q 027949          172 SIARDIKQ  179 (216)
Q Consensus       172 ~l~~~i~~  179 (216)
                      +|.+.+.+
T Consensus       160 ~l~~~l~~  167 (182)
T cd04128         160 IVLAKAFD  167 (182)
T ss_pred             HHHHHHHh
Confidence            99998865

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=1e-32  Score=203.68  Aligned_cols=167  Identities=51%  Similarity=0.934  Sum_probs=146.3

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEEC----------CeEEEEEEEeCCCccccccccc
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD----------GKRIKLQIWDTAGQERFRTITT   82 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~G~~~~~~~~~   82 (216)
                      ++.+||+++|++|||||||++++.+..+...+.++.+.+.....+.+.          +..+.+.+||++|++.+..++.
T Consensus         2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   81 (180)
T cd04127           2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT   81 (180)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence            367999999999999999999999999988888888877766666553          4568999999999999999999


Q ss_pred             cccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecC
Q 027949           83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK  161 (216)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (216)
                      .+++++|++|+|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+ ......+++..++...+++++++||+
T Consensus        82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sak  160 (180)
T cd04127          82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLED-QRQVSEEQAKALADKYGIPYFETSAA  160 (180)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchh-cCccCHHHHHHHHHHcCCeEEEEeCC
Confidence            99999999999999999999999999998887653 34689999999999865 34566778899999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q 027949          162 TNLNVEEVFFSIARDIKQR  180 (216)
Q Consensus       162 ~~~gi~~l~~~l~~~i~~~  180 (216)
                      +|.|++++|++|.+.+.++
T Consensus       161 ~~~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         161 TGTNVEKAVERLLDLVMKR  179 (180)
T ss_pred             CCCCHHHHHHHHHHHHHhh
Confidence            9999999999999988754

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=1.4e-32  Score=208.03  Aligned_cols=166  Identities=25%  Similarity=0.518  Sum_probs=143.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+|+|.+|+|||||++++....+...+.|+.+..+. ..+.+++..+.+.||||+|++.|..++..+++++|++|+||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf   80 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF   80 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence            79999999999999999999999998888888875553 56788899999999999999999999999999999999999


Q ss_pred             eCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEEecCC
Q 027949           96 DVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETSAKT  162 (216)
Q Consensus        96 d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  162 (216)
                      |++++++|..+. .|...+.... .+.|++||+||+||.+..           ..+..++...+++..++ +|++|||++
T Consensus        81 dis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~  159 (222)
T cd04173          81 DISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS  159 (222)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence            999999999985 5776665544 479999999999995421           13667889999999995 999999999


Q ss_pred             CCC-HHHHHHHHHHHHHHHhhc
Q 027949          163 NLN-VEEVFFSIARDIKQRLAD  183 (216)
Q Consensus       163 ~~g-i~~l~~~l~~~i~~~~~~  183 (216)
                      +++ |+++|..++...+.....
T Consensus       160 ~~~~V~~~F~~~~~~~~~~~~~  181 (222)
T cd04173         160 SERSVRDVFHVATVASLGRGHR  181 (222)
T ss_pred             CCcCHHHHHHHHHHHHHhccCC
Confidence            985 999999999988775443

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.2e-33  Score=195.52  Aligned_cols=176  Identities=47%  Similarity=0.794  Sum_probs=158.5

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEE-CCeEEEEEEEeCCCccccccccccccccccEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      .|.++++|+|.+-+|||+|++.++...+.....|+.+.++..+.++. .|..+++++|||+|++.|+++...+++++-++
T Consensus         6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv   85 (213)
T KOG0091|consen    6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV   85 (213)
T ss_pred             EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence            47799999999999999999999999999999999999988888777 57779999999999999999999999999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q 027949           92 LLVYDVTDESSFNNIRNWIRNIEQHAS--DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEV  169 (216)
Q Consensus        92 i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  169 (216)
                      ++|||+++.++|+++..|+.+..-+..  ...-+++|++|+||. ..+.+..++++.++..+|+.|+++||++|.|+++.
T Consensus        86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~-SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEA  164 (213)
T KOG0091|consen   86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQ-SQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEA  164 (213)
T ss_pred             EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchh-hhccccHHHHHHHHHhcCceEEEecccCCCcHHHH
Confidence            999999999999999999988765543  334457789999996 47889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccCCCC
Q 027949          170 FFSIARDIKQRLADTDSRAE  189 (216)
Q Consensus       170 ~~~l~~~i~~~~~~~~~~~~  189 (216)
                      |..|.+.+.....+.+-..+
T Consensus       165 F~mlaqeIf~~i~qGeik~e  184 (213)
T KOG0091|consen  165 FDMLAQEIFQAIQQGEIKLE  184 (213)
T ss_pred             HHHHHHHHHHHHhcCceeee
Confidence            99999999998887554433

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=9.6e-33  Score=201.26  Aligned_cols=162  Identities=35%  Similarity=0.756  Sum_probs=146.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+|+|.+|+|||||++++++..+...+.++.+.++....+..++..+.+.+||++|.+.+..++..+++.+|++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999998888899888888888888888899999999999999988999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHHhcC-----CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q 027949           96 DVTDESSFNNIRNWIRNIEQHAS-----DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF  170 (216)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  170 (216)
                      |+++++++..+..|+..+.....     .+.|+++|+||+|+.+ ......++...++...+++++++||++|.|++++|
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  159 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTK-HRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMF  159 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccc-ccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence            99999999999999998877653     4689999999999864 34566777778888888999999999999999999


Q ss_pred             HHHHHHHH
Q 027949          171 FSIARDIK  178 (216)
Q Consensus       171 ~~l~~~i~  178 (216)
                      ++|++.++
T Consensus       160 ~~l~~~l~  167 (168)
T cd04119         160 QTLFSSIV  167 (168)
T ss_pred             HHHHHHHh
Confidence            99998875

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=1.5e-32  Score=200.05  Aligned_cols=163  Identities=53%  Similarity=0.921  Sum_probs=146.8

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      +.+||+|+|.+|||||||++++.+..+...+.++.+.+.....+..++..+.+.+||+||.+.+..++..+++.++++|+
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            45899999999999999999999999887888888888888888888888899999999999999889999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q 027949           94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI  173 (216)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  173 (216)
                      |||++++.++..+..|+..+......+.|+++|+||+|+.+ .+....++...++...+++++++||++|.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  160 (165)
T cd01868          82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRH-LRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQL  160 (165)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-cccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999998887766799999999999865 34556777888888888999999999999999999999


Q ss_pred             HHHH
Q 027949          174 ARDI  177 (216)
Q Consensus       174 ~~~i  177 (216)
                      ++.+
T Consensus       161 ~~~i  164 (165)
T cd01868         161 LTEI  164 (165)
T ss_pred             HHHh
Confidence            8775

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=2.1e-32  Score=207.83  Aligned_cols=166  Identities=29%  Similarity=0.565  Sum_probs=145.6

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ...+||+|+|.+|||||||+++++.+.+...+.++.+.+.....+..++..+.+.+||++|++.+..++..+++.+|++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            56699999999999999999999999988888888888887777777877899999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS  172 (216)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  172 (216)
                      +|||+++++++..+..|+..+.... .+.|++||+||+|+.+  .....+.+ .++...++.|+++||++|.|++++|.|
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~--~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~  166 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN--RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLY  166 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh--ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHH
Confidence            9999999999999999999988765 4799999999999853  23334444 677778899999999999999999999


Q ss_pred             HHHHHHHHhh
Q 027949          173 IARDIKQRLA  182 (216)
Q Consensus       173 l~~~i~~~~~  182 (216)
                      |++.+.+..+
T Consensus       167 l~~~~~~~~~  176 (219)
T PLN03071        167 LARKLAGDPN  176 (219)
T ss_pred             HHHHHHcCcc
Confidence            9999876533

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=2.5e-32  Score=199.57  Aligned_cols=166  Identities=52%  Similarity=0.933  Sum_probs=149.0

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      .+.+||+|+|.+|+|||||++++.+..+...+.++.+.+.....+..++....+.+||++|.+.+..+...+++.+|+++
T Consensus         2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il   81 (168)
T cd01866           2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   81 (168)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence            46699999999999999999999999888777788888887888888888889999999999999888889999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS  172 (216)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  172 (216)
                      +|||+++++++..+..|+..+......+.|+++|+||.|+.+ ......+++..++...++.++++||+++.|++++|.+
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~  160 (168)
T cd01866          82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLES-RREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFIN  160 (168)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            999999999999999999998876656799999999999864 3456777888888888999999999999999999999


Q ss_pred             HHHHHHH
Q 027949          173 IARDIKQ  179 (216)
Q Consensus       173 l~~~i~~  179 (216)
                      +.+.+.+
T Consensus       161 ~~~~~~~  167 (168)
T cd01866         161 TAKEIYE  167 (168)
T ss_pred             HHHHHHh
Confidence            9988764

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.6e-33  Score=193.95  Aligned_cols=175  Identities=34%  Similarity=0.699  Sum_probs=160.1

Q ss_pred             CCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027949            9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   88 (216)
Q Consensus         9 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   88 (216)
                      ...+.+.+||+++|.--+|||||+-++....|......+..-.+....+.+.+....+.||||+|++.|..+-+.|++.+
T Consensus         7 ~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgS   86 (218)
T KOG0088|consen    7 VDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGS   86 (218)
T ss_pred             ccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCC
Confidence            34567889999999999999999999999999877777776677778888888889999999999999999999999999


Q ss_pred             cEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHH
Q 027949           89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE  168 (216)
Q Consensus        89 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (216)
                      +++++|||++|.++|..++.|..++.......+-+++|+||+||.+ ++.+..+++..++..-|..|+++||+++.||.+
T Consensus        87 nGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEe-eR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~e  165 (218)
T KOG0088|consen   87 NGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEE-ERQVTRQEAEAYAESVGALYMETSAKDNVGISE  165 (218)
T ss_pred             CceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHH-hhhhhHHHHHHHHHhhchhheecccccccCHHH
Confidence            9999999999999999999999999998887888999999999964 678999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcc
Q 027949          169 VFFSIARDIKQRLADT  184 (216)
Q Consensus       169 l~~~l~~~i~~~~~~~  184 (216)
                      +|+.|...++++....
T Consensus       166 lFe~Lt~~MiE~~s~~  181 (218)
T KOG0088|consen  166 LFESLTAKMIEHSSQR  181 (218)
T ss_pred             HHHHHHHHHHHHhhhc
Confidence            9999999988876443

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=2.4e-32  Score=203.02  Aligned_cols=167  Identities=32%  Similarity=0.609  Sum_probs=141.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEEC-CeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      +||+|+|.+|+|||||++++.++.+...+.++.+..+.. .+... +..+.+.+|||+|++.+..++..+++++|++|+|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            589999999999999999999999887777777655433 35554 6778999999999999998888899999999999


Q ss_pred             EeCCCHhHHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCCC---CccChHHHHHHHHHhCC-eEEEEecCCCCCHHHH
Q 027949           95 YDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADMDESK---RAVPTSKGQALADEYGI-KFFETSAKTNLNVEEV  169 (216)
Q Consensus        95 ~d~~~~~~~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l  169 (216)
                      ||+++++++..+.. |+..+.... .+.|+++|+||+|+.+..   ..+...++..++..+++ +++++||++|.|++++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  158 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV  158 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence            99999999999864 877776543 478999999999985422   24567788889999987 9999999999999999


Q ss_pred             HHHHHHHHHHHhhcc
Q 027949          170 FFSIARDIKQRLADT  184 (216)
Q Consensus       170 ~~~l~~~i~~~~~~~  184 (216)
                      |.++++.+.......
T Consensus       159 f~~l~~~~~~~~~~~  173 (187)
T cd04132         159 FDTAIEEALKKEGKA  173 (187)
T ss_pred             HHHHHHHHHhhhhhh
Confidence            999999998765444

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.5e-33  Score=189.92  Aligned_cols=189  Identities=46%  Similarity=0.756  Sum_probs=175.6

Q ss_pred             cCCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q 027949            8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG   87 (216)
Q Consensus         8 ~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   87 (216)
                      |.+..++.+|++|+|+.|+|||.|++++..+.+......+.+.++..+.+.+.+..++++||||.|++.|++..+.+++.
T Consensus         2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG   81 (214)
T KOG0086|consen    2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG   81 (214)
T ss_pred             cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence            34567899999999999999999999999999998899999999999999999999999999999999999999999999


Q ss_pred             ccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHH
Q 027949           88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE  167 (216)
Q Consensus        88 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  167 (216)
                      +-+.++|||+++.++|..+..|+..+.-..++++-+++++||.||.+ .+.+...++..|+.+..+.+.++||.+|++++
T Consensus        82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~-~R~VtflEAs~FaqEnel~flETSa~TGeNVE  160 (214)
T KOG0086|consen   82 AAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDP-EREVTFLEASRFAQENELMFLETSALTGENVE  160 (214)
T ss_pred             ccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcCh-hhhhhHHHHHhhhcccceeeeeecccccccHH
Confidence            99999999999999999999999999888888888899999999965 67889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcccCCCCCccccccC
Q 027949          168 EVFFSIARDIKQRLADTDSRAEPQTIKINQ  197 (216)
Q Consensus       168 ~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~  197 (216)
                      +.|-...+.|+.+.+..+.+++..+.-|+.
T Consensus       161 EaFl~c~~tIl~kIE~GElDPer~gsGIQY  190 (214)
T KOG0086|consen  161 EAFLKCARTILNKIESGELDPERMGSGIQY  190 (214)
T ss_pred             HHHHHHHHHHHHHHhhcCCCHHHccccccc
Confidence            999999999999999988877766655554

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=3.5e-32  Score=197.46  Aligned_cols=161  Identities=42%  Similarity=0.833  Sum_probs=151.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (216)
                      ||+|+|++|+|||||++++.+..+...+.++.+.+.....+..++..+.+.+||++|++.+..+...+++++|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999998899998888889999999999999999999999999888899999999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHH
Q 027949           97 VTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARD  176 (216)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  176 (216)
                      +++++++..+..|+..+....+...|++||+||.|+.+ .+.+..++++.++..++.+|+++||+++.|+.++|..+++.
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~  159 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSD-EREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRK  159 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGG-GSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccceeeeccccccc-cccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999999999999988876799999999999865 56788889999999999999999999999999999999998


Q ss_pred             HH
Q 027949          177 IK  178 (216)
Q Consensus       177 i~  178 (216)
                      ++
T Consensus       160 i~  161 (162)
T PF00071_consen  160 IL  161 (162)
T ss_dssp             HH
T ss_pred             Hh
Confidence            75

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=4.5e-32  Score=197.58  Aligned_cols=162  Identities=49%  Similarity=0.896  Sum_probs=143.9

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      +.+||+|+|++|+|||||++++....+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            46899999999999999999999988887777887777777888888888899999999999998889999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEecCCCCCHHHHHHH
Q 027949           94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVEEVFFS  172 (216)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~  172 (216)
                      |||++++.++..+..|+..+......+.|+++|+||+|+.+ .+....+.+..+++..+. .++++||++|.|++++|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~  160 (165)
T cd01864          82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEE-QREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLL  160 (165)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc-ccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHH
Confidence            99999999999999999998776666799999999999865 345566778888888875 7899999999999999999


Q ss_pred             HHHH
Q 027949          173 IARD  176 (216)
Q Consensus       173 l~~~  176 (216)
                      |.+.
T Consensus       161 l~~~  164 (165)
T cd01864         161 MATE  164 (165)
T ss_pred             HHHh
Confidence            9865

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=6.3e-32  Score=197.74  Aligned_cols=163  Identities=37%  Similarity=0.701  Sum_probs=143.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (216)
                      ||+++|.+|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            79999999999999999999999998899998888877888888888999999999999999999999999999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCC-ccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q 027949           97 VTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKR-AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA  174 (216)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  174 (216)
                      +++++++..+..|+..+... .+...|+++|+||+|+.+... ....+++..++..++.+++++||++|.|++++|..|+
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~  161 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA  161 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            99999999999999887654 334578899999999854322 2345667778888889999999999999999999999


Q ss_pred             HHHHH
Q 027949          175 RDIKQ  179 (216)
Q Consensus       175 ~~i~~  179 (216)
                      +.+.+
T Consensus       162 ~~~~~  166 (170)
T cd04108         162 ALTFE  166 (170)
T ss_pred             HHHHH
Confidence            88754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=7.1e-32  Score=198.34  Aligned_cols=160  Identities=28%  Similarity=0.573  Sum_probs=138.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+|+|.+|+|||||++++..+.+...+.|+.+..+. ..+..++..+.+.|||++|++.+..++..+++++|++|+||
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~   80 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF   80 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence            79999999999999999999999988788888775553 45677888899999999999999998999999999999999


Q ss_pred             eCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhC-CeEEEEecCC
Q 027949           96 DVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDES-----------KRAVPTSKGQALADEYG-IKFFETSAKT  162 (216)
Q Consensus        96 d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  162 (216)
                      |+++++++..+. .|+..+.... .+.|++||+||+|+.+.           .+.+..+++..+++..+ +.|+++||++
T Consensus        81 d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t  159 (175)
T cd01874          81 SVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT  159 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence            999999999997 4888876654 36899999999998542           14566778888888887 6999999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027949          163 NLNVEEVFFSIARDI  177 (216)
Q Consensus       163 ~~gi~~l~~~l~~~i  177 (216)
                      |.|++++|+.++...
T Consensus       160 g~~v~~~f~~~~~~~  174 (175)
T cd01874         160 QKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998754

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=1e-31  Score=195.97  Aligned_cols=160  Identities=32%  Similarity=0.675  Sum_probs=140.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+|+|++|||||||+++++...+...+.++.+.+.....+..++..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999988888778888887777777777888899999999999999888889999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q 027949           96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR  175 (216)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  175 (216)
                      |+++++++..+..|+..+..... +.|+++|+||+|+.+  .... .....++...++.++++||++|.|++++|++|.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~--~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~  156 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD--RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLAR  156 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc--ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHH
Confidence            99999999999999999987765 799999999999863  2222 3345566677789999999999999999999998


Q ss_pred             HHHH
Q 027949          176 DIKQ  179 (216)
Q Consensus       176 ~i~~  179 (216)
                      .+.+
T Consensus       157 ~~~~  160 (166)
T cd00877         157 KLLG  160 (166)
T ss_pred             HHHh
Confidence            8875

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=6.9e-32  Score=195.77  Aligned_cols=160  Identities=50%  Similarity=0.855  Sum_probs=144.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+|+|++|+|||||++++.+..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988878888887777778888888899999999999999888999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q 027949           96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR  175 (216)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  175 (216)
                      |+++++++..+..|+..+......+.|+++|+||+|+.+ ......+++..++...++.++++||+++.|++++|+++++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~  159 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLAD-QREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCAR  159 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcch-hccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            999999999999999888776666899999999999865 4556778888899999999999999999999999999987


Q ss_pred             H
Q 027949          176 D  176 (216)
Q Consensus       176 ~  176 (216)
                      .
T Consensus       160 ~  160 (161)
T cd04113         160 S  160 (161)
T ss_pred             h
Confidence            5

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=1e-31  Score=195.28  Aligned_cols=163  Identities=59%  Similarity=1.021  Sum_probs=146.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+|+|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999999888778888888888888888888889999999999999988999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q 027949           96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR  175 (216)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  175 (216)
                      |++++.++..+..|+..+......+.|+++|+||+|+.+ ......+.+..++..++++++++|+++|.|++++|++|.+
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~  159 (164)
T smart00175       81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLED-QRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhccc-ccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            999999999999999988877656899999999999854 3455677788888888999999999999999999999998


Q ss_pred             HHHH
Q 027949          176 DIKQ  179 (216)
Q Consensus       176 ~i~~  179 (216)
                      .+.+
T Consensus       160 ~~~~  163 (164)
T smart00175      160 EILK  163 (164)
T ss_pred             HHhh
Confidence            8754

Rab GTPases are implicated in vesicle trafficking.

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=9.9e-32  Score=195.18  Aligned_cols=160  Identities=41%  Similarity=0.728  Sum_probs=138.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+|+|.+|||||||++++....+...+.++.+ +.....+..++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999888766666665 444566778888889999999999999999999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q 027949           96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA  174 (216)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  174 (216)
                      |+++++++..+..|+..+.... ..+.|+++|+||+|+.+ ......++...++..++++++++||++|.|++++|.+|+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04136          81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLED-ERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV  159 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999988887653 34789999999999865 344566677778888889999999999999999999998


Q ss_pred             HHH
Q 027949          175 RDI  177 (216)
Q Consensus       175 ~~i  177 (216)
                      +.+
T Consensus       160 ~~~  162 (163)
T cd04136         160 RQI  162 (163)
T ss_pred             Hhc
Confidence            754

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=1.3e-31  Score=199.37  Aligned_cols=162  Identities=32%  Similarity=0.583  Sum_probs=137.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (216)
                      ||+|+|.+|+|||||++++..+.+...+.++.+..+ ...+..++..+.+.|||++|++.+..++..+++.+|++|+|||
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d   80 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS   80 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence            799999999999999999999998877777776554 3456677878999999999999999999999999999999999


Q ss_pred             CCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-----------ccChHHHHHHHHHhC-CeEEEEecCCC
Q 027949           97 VTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESKR-----------AVPTSKGQALADEYG-IKFFETSAKTN  163 (216)
Q Consensus        97 ~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-----------~~~~~~~~~~~~~~~-~~~~~~Sa~~~  163 (216)
                      ++++++|..+. .|+..+..... +.|++||+||+|+.+...           .+..++...++...+ +.|+++||++|
T Consensus        81 v~~~~sf~~~~~~~~~~i~~~~~-~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~  159 (189)
T cd04134          81 VDSPDSLENVESKWLGEIREHCP-GVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN  159 (189)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence            99999999886 58888876543 799999999999965321           244566777777777 78999999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q 027949          164 LNVEEVFFSIARDIKQR  180 (216)
Q Consensus       164 ~gi~~l~~~l~~~i~~~  180 (216)
                      .|++++|.+|++.+...
T Consensus       160 ~~v~e~f~~l~~~~~~~  176 (189)
T cd04134         160 RGVNEAFTEAARVALNV  176 (189)
T ss_pred             CCHHHHHHHHHHHHhcc
Confidence            99999999999988743

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=2.1e-31  Score=194.99  Aligned_cols=162  Identities=43%  Similarity=0.737  Sum_probs=143.4

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      +..+||+|+|.+|+|||||++++.+..+...+.++.+.+.....+.+++..+.+.|||++|++.+..++..+++.+|+++
T Consensus         3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   82 (170)
T cd04116           3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL   82 (170)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence            46699999999999999999999999888777788777777778888998999999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEecCCCCCHH
Q 027949           93 LVYDVTDESSFNNIRNWIRNIEQHA----SDNVNKILVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVE  167 (216)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~  167 (216)
                      +|||+++++++..+..|+..+....    ..+.|+++|+||+|+.  ......+++..++..++ ++++++||++|.|++
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  160 (170)
T cd04116          83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP--ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA  160 (170)
T ss_pred             EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc--ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence            9999999999999999988776543    2468999999999985  35567788888988888 589999999999999


Q ss_pred             HHHHHHHHH
Q 027949          168 EVFFSIARD  176 (216)
Q Consensus       168 ~l~~~l~~~  176 (216)
                      ++|.++++.
T Consensus       161 ~~~~~~~~~  169 (170)
T cd04116         161 AAFEEAVRR  169 (170)
T ss_pred             HHHHHHHhh
Confidence            999999865

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=2.8e-31  Score=192.72  Aligned_cols=160  Identities=32%  Similarity=0.560  Sum_probs=138.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+|+|.+|+|||||++++....+...+.++.+.+.....+..++..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999888777777666666666777888899999999999999999999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q 027949           96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR  175 (216)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  175 (216)
                      |++++.++..+..|+..+..... +.|+++|+||+|+.+.    ...+...++...+++++++||++|.|++++|+.+++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  155 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREYRP-EIPCIVVANKIDLDPS----VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIK  155 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEECccCchh----HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999988876543 6899999999998431    123455666677899999999999999999999999


Q ss_pred             HHHHH
Q 027949          176 DIKQR  180 (216)
Q Consensus       176 ~i~~~  180 (216)
                      .+.++
T Consensus       156 ~~~~~  160 (161)
T cd04124         156 LAVSY  160 (161)
T ss_pred             HHHhc
Confidence            88765

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=1.8e-31  Score=193.65  Aligned_cols=159  Identities=38%  Similarity=0.713  Sum_probs=140.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEEC--CeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD--GKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      +||+|+|.+|+|||||++++.++.+...+.++.+.++....+.+.  +..+.+.+||+||++.+...+..+++++|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            589999999999999999999998887788888877766667776  677899999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q 027949           94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI  173 (216)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  173 (216)
                      |||+++++++..+..|+..+.... .+.|+++|+||+|+.. ...+..+++..++...+++++++||++|.|++++|++|
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  158 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLD-QAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYL  158 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhccc-ccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            999999999999999998886654 3799999999999864 34456677888899999999999999999999999999


Q ss_pred             HHH
Q 027949          174 ARD  176 (216)
Q Consensus       174 ~~~  176 (216)
                      ...
T Consensus       159 ~~~  161 (162)
T cd04106         159 AEK  161 (162)
T ss_pred             HHh
Confidence            754

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=2.3e-31  Score=193.68  Aligned_cols=160  Identities=39%  Similarity=0.725  Sum_probs=138.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+|+|.+|||||||+++++.+.+...+.++.+..+ ...+..++..+.+.+|||+|++.+..++..+++.+|++++||
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY   80 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence            7999999999999999999998887766666665433 456777888899999999999999999999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q 027949           96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA  174 (216)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  174 (216)
                      |++++.++..+..|+..+.... ..+.|+++|+||+|+.+ .......+...+++..+++++++||++|.|++++|.||.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~  159 (164)
T cd04175          81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED-ERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchh-ccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence            9999999999999988887643 35799999999999965 344566667788888889999999999999999999998


Q ss_pred             HHH
Q 027949          175 RDI  177 (216)
Q Consensus       175 ~~i  177 (216)
                      +.+
T Consensus       160 ~~l  162 (164)
T cd04175         160 RQI  162 (164)
T ss_pred             HHh
Confidence            765

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=2.5e-31  Score=195.23  Aligned_cols=159  Identities=34%  Similarity=0.633  Sum_probs=137.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+|+|.+|||||||+.++..+.+...+.++.. ......+..++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            7999999999999999999999988877877765 343445677888899999999999999999999999999999999


Q ss_pred             eCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEEecCC
Q 027949           96 DVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETSAKT  162 (216)
Q Consensus        96 d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  162 (216)
                      |++++++|..+. .|+..+.... .+.|++||+||+|+.+..           ..+..+++..++..++. ++++|||++
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  159 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT  159 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence            999999999996 5888776654 479999999999995421           24677888899999984 999999999


Q ss_pred             CCCHHHHHHHHHHH
Q 027949          163 NLNVEEVFFSIARD  176 (216)
Q Consensus       163 ~~gi~~l~~~l~~~  176 (216)
                      |+|++++|+.+++.
T Consensus       160 ~~~i~~~f~~l~~~  173 (174)
T cd01871         160 QKGLKTVFDEAIRA  173 (174)
T ss_pred             cCCHHHHHHHHHHh
Confidence            99999999999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=3.9e-31  Score=191.72  Aligned_cols=160  Identities=43%  Similarity=0.750  Sum_probs=143.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      .||+++|.+|||||||++++++..+...+.++.+.++....+..++..+.+.+||+||+..+..++..+++.+|++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            38999999999999999999999988888888888888888888888889999999999999988999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q 027949           96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR  175 (216)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  175 (216)
                      |+++++++..+..|+..+......+.|+++|+||+|+.+ ......++...++...++.++++||+++.|++++|++|.+
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~  159 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSD-KRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIAS  159 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccc-cCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            999999999999999988776655799999999999853 3456677788888888899999999999999999999987


Q ss_pred             H
Q 027949          176 D  176 (216)
Q Consensus       176 ~  176 (216)
                      .
T Consensus       160 ~  160 (161)
T cd01861         160 A  160 (161)
T ss_pred             h
Confidence            5

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=3.5e-31  Score=192.45  Aligned_cols=160  Identities=38%  Similarity=0.668  Sum_probs=138.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+++|.+|+|||||++++..+.+...+.++.+ +.....+..++..+.+.|||++|.+.+..++..+++++|++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~   80 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence            7999999999999999999999988776666654 455567778888889999999999999999999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q 027949           96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA  174 (216)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  174 (216)
                      |+++++++..+..|+..+.... ..+.|+++|+||+|+.+ .......+...++...+++++++||++|.|++++|.+|+
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04176          81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLES-EREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV  159 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh-cCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999988887653 25799999999999854 344555667778877889999999999999999999998


Q ss_pred             HHH
Q 027949          175 RDI  177 (216)
Q Consensus       175 ~~i  177 (216)
                      +.+
T Consensus       160 ~~l  162 (163)
T cd04176         160 RQM  162 (163)
T ss_pred             Hhc
Confidence            754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=7.8e-31  Score=190.51  Aligned_cols=161  Identities=49%  Similarity=0.847  Sum_probs=144.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+|+|++|+|||||++++++..+...+.++.+..+....+.+++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   81 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVY   81 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEE
Confidence            79999999999999999999999987767777777777788888888899999999999988888888999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q 027949           96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR  175 (216)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  175 (216)
                      |+++++++..+..|+..+........|+++++||+|+.+ ......++...++...++.++++||++|.|++++|++|++
T Consensus        82 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd01860          82 DITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLES-KRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK  160 (163)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-cCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            999999999999999988877656799999999999864 3456677888888888999999999999999999999998


Q ss_pred             HH
Q 027949          176 DI  177 (216)
Q Consensus       176 ~i  177 (216)
                      .+
T Consensus       161 ~l  162 (163)
T cd01860         161 KL  162 (163)
T ss_pred             Hh
Confidence            75

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=1.9e-30  Score=196.30  Aligned_cols=169  Identities=51%  Similarity=0.828  Sum_probs=143.4

Q ss_pred             CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027949           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      .....+||+|+|.+|+|||||+++|++..+. .+.++.+.+.....+.+++..+.+.+||+||++.+..++..+++.+|+
T Consensus        10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~   88 (211)
T PLN03118         10 GYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQG   88 (211)
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            4456699999999999999999999988764 566777777777778888888899999999999999999999999999


Q ss_pred             EEEEEeCCCHhHHHHHHH-HHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHH
Q 027949           91 ILLVYDVTDESSFNNIRN-WIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE  168 (216)
Q Consensus        91 ~i~v~d~~~~~~~~~~~~-~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (216)
                      +|+|||+++++++..+.. |...+.... ..+.|+++|+||+|+.. ......++...++..+++.|+++||++|.|+++
T Consensus        89 ~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~-~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~  167 (211)
T PLN03118         89 IILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES-ERDVSREEGMALAKEHGCLFLECSAKTRENVEQ  167 (211)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            999999999999999876 555554433 23579999999999865 344566777888888899999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 027949          169 VFFSIARDIKQRL  181 (216)
Q Consensus       169 l~~~l~~~i~~~~  181 (216)
                      +|++|.+.+.+..
T Consensus       168 l~~~l~~~~~~~~  180 (211)
T PLN03118        168 CFEELALKIMEVP  180 (211)
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999997754

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=5.6e-31  Score=191.85  Aligned_cols=159  Identities=35%  Similarity=0.540  Sum_probs=135.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+++|.+|+|||||++++++..+...+.++.+..+ ...+..++..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            7899999999999999999999988777777665333 445566777789999999999999988888899999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949           96 DVTDESSFNNIRNWIRNIEQHAS---DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS  172 (216)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  172 (216)
                      |+++++++..+..|+..+.....   .+.|+++|+||+|+.+ ...+..+++..++...++.++++||++|.|++++|++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~  159 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH-KREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQE  159 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc-cCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Confidence            99999999999998877765432   4689999999999864 3456666777788888899999999999999999999


Q ss_pred             HHHH
Q 027949          173 IARD  176 (216)
Q Consensus       173 l~~~  176 (216)
                      |++.
T Consensus       160 l~~~  163 (165)
T cd04140         160 LLNL  163 (165)
T ss_pred             HHhc
Confidence            9753

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=6.7e-31  Score=190.39  Aligned_cols=159  Identities=38%  Similarity=0.664  Sum_probs=137.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+|+|.+|+|||||++++.+..+...+.++.+.. ....+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~   80 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   80 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchhe-EEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence            799999999999999999999988877777766533 3455677887788999999999999999999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q 027949           96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA  174 (216)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  174 (216)
                      |++++.++..+..|+..+.... ..+.|+++|+||+|+.+  ......++..++...+++++++||++|.|++++|++|+
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  158 (162)
T cd04138          81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV  158 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc--ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence            9999999999988888887654 34789999999999864  45566778888888899999999999999999999998


Q ss_pred             HHH
Q 027949          175 RDI  177 (216)
Q Consensus       175 ~~i  177 (216)
                      +.+
T Consensus       159 ~~~  161 (162)
T cd04138         159 REI  161 (162)
T ss_pred             HHh
Confidence            754

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=6.3e-31  Score=191.26  Aligned_cols=161  Identities=42%  Similarity=0.734  Sum_probs=137.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+|+|++|||||||++++.+..+...+.++.+ +.....+..++..+.+.+||+||++.+..++..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            4899999999999999999999888766666554 333456677888889999999999999999999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q 027949           96 DVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA  174 (216)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  174 (216)
                      |+++++++..+..|+..+..... .+.|+++|+||+|+.+ ......+.+..++...+++++++||++|.|++++|++|+
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  158 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES-ERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLV  158 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHH
Confidence            99999999999998887766432 4689999999999865 345566778888888889999999999999999999999


Q ss_pred             HHHH
Q 027949          175 RDIK  178 (216)
Q Consensus       175 ~~i~  178 (216)
                      +.+.
T Consensus       159 ~~~~  162 (164)
T smart00173      159 REIR  162 (164)
T ss_pred             HHHh
Confidence            8764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=8.3e-31  Score=195.83  Aligned_cols=156  Identities=29%  Similarity=0.632  Sum_probs=138.6

Q ss_pred             EcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCH
Q 027949           21 IGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE  100 (216)
Q Consensus        21 ~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~  100 (216)
                      +|.+|||||||+++++...+...+.++.+.+.....+.+++..+.+.|||++|++.|..++..+++++|++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999888878888888888888888888889999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027949          101 SSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR  180 (216)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  180 (216)
                      .++..+..|+..+.... .+.|++||+||+|+..  +.+..+. ..++...++.|++|||++|+||+++|.||++.+.+.
T Consensus        81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~--~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~  156 (200)
T smart00176       81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD--RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD  156 (200)
T ss_pred             HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc--ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            99999999999998765 3799999999999853  2333333 467777889999999999999999999999998775

Ran is involved in the active transport of proteins through nuclear pores.

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.5e-31  Score=178.84  Aligned_cols=207  Identities=40%  Similarity=0.727  Sum_probs=177.7

Q ss_pred             CCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027949            9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   88 (216)
Q Consensus         9 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   88 (216)
                      ..+..+.+|-+++|.-|+|||.|+..+..+.+-...+.+.+.++..+.+++.+..+++.||||.|+++|+...+.+++.+
T Consensus         5 pynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrga   84 (215)
T KOG0097|consen    5 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGA   84 (215)
T ss_pred             ccchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence            45678999999999999999999999999999888889999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHH
Q 027949           89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE  168 (216)
Q Consensus        89 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (216)
                      -+.++|||+++..++..+..|+........++..+++++||.||.. ++.+..++++.|+.++|..++++||++|.++++
T Consensus        85 agalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~-qrdv~yeeak~faeengl~fle~saktg~nved  163 (215)
T KOG0097|consen   85 AGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLES-QRDVTYEEAKEFAEENGLMFLEASAKTGQNVED  163 (215)
T ss_pred             cceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhh-cccCcHHHHHHHHhhcCeEEEEecccccCcHHH
Confidence            9999999999999999999999998888888889999999999954 778899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcccCCCCC---ccccccCCCCccc-hhhhccCCCCcCC
Q 027949          169 VFFSIARDIKQRLADTDSRAEP---QTIKINQPDQAGG-AAQAAQRSACCGS  216 (216)
Q Consensus       169 l~~~l~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~c~~  216 (216)
                      .|-...+.+++...+...+...   ...+..+.+++.+ .++.+.++--|||
T Consensus       164 afle~akkiyqniqdgsldlnaaesgvq~k~~~p~~~~l~se~~~~kd~c~c  215 (215)
T KOG0097|consen  164 AFLETAKKIYQNIQDGSLDLNAAESGVQHKPSQPSRTSLSSEATGAKDQCSC  215 (215)
T ss_pred             HHHHHHHHHHHhhhcCcccccchhccCcCCCCCCCccccccCCCCccccCCC
Confidence            9999999999987776544322   2222222222222 3355555555766

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.98  E-value=1.7e-30  Score=188.92  Aligned_cols=161  Identities=40%  Similarity=0.634  Sum_probs=137.3

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+++|.+|+|||||++++++..+...+.++.+.. ....+.+++..+.+.+||+||++++..++..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            3899999999999999999999988776666665533 344566788888999999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q 027949           95 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI  173 (216)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  173 (216)
                      ||++++.++..+..|+..+.... ..+.|+++|+||+|+.. ......++...++...+++++++||++|.|++++|++|
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  159 (164)
T cd04145          81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEH-QRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL  159 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccc-cceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence            99999999999999988887643 34789999999999864 33456667788888888999999999999999999999


Q ss_pred             HHHH
Q 027949          174 ARDI  177 (216)
Q Consensus       174 ~~~i  177 (216)
                      ++.+
T Consensus       160 ~~~~  163 (164)
T cd04145         160 VRVI  163 (164)
T ss_pred             HHhh
Confidence            8764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04123 Rab21 Rab21 subfamily

Probab=99.98  E-value=2.3e-30  Score=187.59  Aligned_cols=161  Identities=42%  Similarity=0.791  Sum_probs=140.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+|+|.+|+|||||++++++..+...+.++.+.......+...+..+.+.+||++|++.+..++..+++.+|++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999999998887666666666666667777777789999999999989888999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q 027949           96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR  175 (216)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  175 (216)
                      |+++++++..+..|+..+......+.|+++|+||+|+.+ ......++...+....+++++++|++++.|++++++||.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~  159 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLER-QRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAK  159 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            999999999999999988877666799999999999864 3345566777788888999999999999999999999988


Q ss_pred             HH
Q 027949          176 DI  177 (216)
Q Consensus       176 ~i  177 (216)
                      .+
T Consensus       160 ~~  161 (162)
T cd04123         160 RM  161 (162)
T ss_pred             Hh
Confidence            75

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01862 Rab7 Rab7 subfamily

Probab=99.98  E-value=2.7e-30  Score=189.20  Aligned_cols=165  Identities=44%  Similarity=0.762  Sum_probs=143.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+|+|.+|+|||||++++.+..+.....++.+.++....+.+.+..+.+.+||+||++.+..++..+++++|++|++|
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999888777777777777777888888899999999999999989999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEecCCCCCHHHHH
Q 027949           96 DVTDESSFNNIRNWIRNIEQHAS----DNVNKILVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVF  170 (216)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~  170 (216)
                      |+++++++..+..|...+.....    .+.|+++|+||+|+.+ ......++...++...+ .+++++|+++|.|++++|
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  159 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE-KRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAF  159 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc-ccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHH
Confidence            99999999988888877655442    3689999999999964 34456677778888887 799999999999999999


Q ss_pred             HHHHHHHHHHh
Q 027949          171 FSIARDIKQRL  181 (216)
Q Consensus       171 ~~l~~~i~~~~  181 (216)
                      ++|.+.+.+..
T Consensus       160 ~~i~~~~~~~~  170 (172)
T cd01862         160 ETIARKALEQE  170 (172)
T ss_pred             HHHHHHHHhcc
Confidence            99999988763

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04142 RRP22 RRP22 subfamily

Probab=99.98  E-value=1.8e-30  Score=194.16  Aligned_cols=164  Identities=23%  Similarity=0.382  Sum_probs=134.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc--------cccccccc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------ITTAYYRG   87 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~   87 (216)
                      +||+|+|.+|||||||++++.+..+...+.|+.+.+.....+.+++..+.+.+|||||...+..        .....++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            5899999999999999999999998877888877666666777888889999999999654321        12334688


Q ss_pred             ccEEEEEEeCCCHhHHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-HhCCeEEEEecCCC
Q 027949           88 AMGILLVYDVTDESSFNNIRNWIRNIEQHA---SDNVNKILVGNKADMDESKRAVPTSKGQALAD-EYGIKFFETSAKTN  163 (216)
Q Consensus        88 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~  163 (216)
                      +|++|+|||+++++++..+..|+..+....   ..+.|+++|+||+|+.. .+....+++..++. ..+++|+++||++|
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~e~Sak~g  159 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR-HRFAPRHVLSVLVRKSWKCGYLECSAKYN  159 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc-cccccHHHHHHHHHHhcCCcEEEecCCCC
Confidence            999999999999999999999988887654   35799999999999965 33445556666654 45789999999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q 027949          164 LNVEEVFFSIARDIKQR  180 (216)
Q Consensus       164 ~gi~~l~~~l~~~i~~~  180 (216)
                      .|++++|+.+++.+...
T Consensus       160 ~~v~~lf~~i~~~~~~~  176 (198)
T cd04142         160 WHILLLFKELLISATTR  176 (198)
T ss_pred             CCHHHHHHHHHHHhhcc
Confidence            99999999999888754

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.98  E-value=2.8e-30  Score=189.06  Aligned_cols=162  Identities=49%  Similarity=0.886  Sum_probs=142.2

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccc-cccccccccccEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-TITTAYYRGAMGILL   93 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~i~   93 (216)
                      .++|+++|++|+|||||+++++...+...+.++.+.+.....+.+++..+.+.+||++|++.+. .++..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            4899999999999999999999998887778888878888888889988999999999998876 467888999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCC---CCCHHHH
Q 027949           94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT---NLNVEEV  169 (216)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~gi~~l  169 (216)
                      |||+++++++..+..|+..+.... ..+.|+++|+||+|+.. ......+++..++...+++|+++||++   +.+++++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~  160 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLRE-QIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAI  160 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchh-hcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHH
Confidence            999999999999999998887654 34699999999999864 344566778888888889999999999   8999999


Q ss_pred             HHHHHHHH
Q 027949          170 FFSIARDI  177 (216)
Q Consensus       170 ~~~l~~~i  177 (216)
                      |.++++.+
T Consensus       161 f~~l~~~~  168 (170)
T cd04115         161 FMTLAHKL  168 (170)
T ss_pred             HHHHHHHh
Confidence            99998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.97  E-value=4e-30  Score=186.99  Aligned_cols=160  Identities=33%  Similarity=0.644  Sum_probs=136.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC--CCCCccccceeeeEEEEEEEEC-CeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG--SFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      +||+|+|.+|||||||++++...  .+...+.++.+.++....+..+ +..+++.+||++|.+.+..++..+++++|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999865  5777788888777766666664 56689999999999998888899999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS  172 (216)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  172 (216)
                      +|||+++++++..+..|+..+.... .+.|+++|+||+|+.+ ...........+....+++++++||++|.|++++|++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  158 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLAD-KAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFES  158 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHH
Confidence            9999999999999999998887664 4689999999999854 3344555666777777889999999999999999999


Q ss_pred             HHHHH
Q 027949          173 IARDI  177 (216)
Q Consensus       173 l~~~i  177 (216)
                      |.+.+
T Consensus       159 l~~~~  163 (164)
T cd04101         159 LARAF  163 (164)
T ss_pred             HHHHh
Confidence            98875

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd01863 Rab18 Rab18 subfamily

Probab=99.97  E-value=5.4e-30  Score=185.76  Aligned_cols=159  Identities=50%  Similarity=0.912  Sum_probs=140.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+|+|++|+|||||++++.+..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999887767788877777777788888889999999999999888889999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q 027949           96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA  174 (216)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  174 (216)
                      |++++.++..+..|+..+.... ..+.|+++|+||+|+..  .....++...++...+++++++||++|.|+++++++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~  158 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN--REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELV  158 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc--cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence            9999999999999998887664 35799999999999853  44566788888888899999999999999999999988


Q ss_pred             HH
Q 027949          175 RD  176 (216)
Q Consensus       175 ~~  176 (216)
                      +.
T Consensus       159 ~~  160 (161)
T cd01863         159 EK  160 (161)
T ss_pred             Hh
Confidence            75

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.9e-32  Score=187.89  Aligned_cols=177  Identities=49%  Similarity=0.912  Sum_probs=158.7

Q ss_pred             CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEEC---------CeEEEEEEEeCCCccccccc
Q 027949           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD---------GKRIKLQIWDTAGQERFRTI   80 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~D~~G~~~~~~~   80 (216)
                      .+.+|.+|.+.+|.+|+|||+|+.++..+.+......+.++++....+.++         +..+.+++|||+|+++|+++
T Consensus         4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL   83 (219)
T KOG0081|consen    4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL   83 (219)
T ss_pred             ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence            356788999999999999999999999999999999999999888887663         45688999999999999999


Q ss_pred             cccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEe
Q 027949           81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETS  159 (216)
Q Consensus        81 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (216)
                      ...|++.+-+++++||+++..+|..+++|+..+.-.. ..+..+++++||+||.+ .+.++.+++..++.++++|||++|
T Consensus        84 TTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~-~R~Vs~~qa~~La~kyglPYfETS  162 (219)
T KOG0081|consen   84 TTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLED-QRVVSEDQAAALADKYGLPYFETS  162 (219)
T ss_pred             HHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhh-hhhhhHHHHHHHHHHhCCCeeeec
Confidence            9999999999999999999999999999998886533 34678899999999965 778899999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHhhcccCC
Q 027949          160 AKTNLNVEEVFFSIARDIKQRLADTDSR  187 (216)
Q Consensus       160 a~~~~gi~~l~~~l~~~i~~~~~~~~~~  187 (216)
                      |-+|.++++..+.|+..++++.+.....
T Consensus       163 A~tg~Nv~kave~LldlvM~Rie~~v~~  190 (219)
T KOG0081|consen  163 ACTGTNVEKAVELLLDLVMKRIEQCVEK  190 (219)
T ss_pred             cccCcCHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999988774433

>cd04114 Rab30 Rab30 subfamily

Probab=99.97  E-value=1.1e-29  Score=185.53  Aligned_cols=164  Identities=49%  Similarity=0.884  Sum_probs=142.6

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ...++|+++|++|+|||||++++....+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..+++.+|+++
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   84 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI   84 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            45699999999999999999999988877667777777777778888888889999999999988888889999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS  172 (216)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  172 (216)
                      +|||++++.++..+..|+..+......+.|+++|+||+|+.+ ...+.......+.+.....++++||++|.|++++|++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~-~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  163 (169)
T cd04114          85 LTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAE-RREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLD  163 (169)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHH
Confidence            999999999999999999888776666799999999999864 3445556667777777789999999999999999999


Q ss_pred             HHHHH
Q 027949          173 IARDI  177 (216)
Q Consensus       173 l~~~i  177 (216)
                      |.+.+
T Consensus       164 i~~~~  168 (169)
T cd04114         164 LACRL  168 (169)
T ss_pred             HHHHh
Confidence            98765

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.97  E-value=5.1e-30  Score=197.42  Aligned_cols=161  Identities=27%  Similarity=0.451  Sum_probs=136.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+|+|.+|+|||||+++++...+...+.++.+ +.....+.+++..+.+.||||+|.+.+..++..++..+|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            4899999999999999999999988877777765 555667788888899999999999988888888889999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHHh---------cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH-hCCeEEEEecCCCCC
Q 027949           96 DVTDESSFNNIRNWIRNIEQH---------ASDNVNKILVGNKADMDESKRAVPTSKGQALADE-YGIKFFETSAKTNLN  165 (216)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~---------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~g  165 (216)
                      |++++++|..+..|+..+...         ...+.|+++|+||+|+.. ...+..+++..++.. .++.++++||++|.|
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~-~~~v~~~ei~~~~~~~~~~~~~evSAktg~g  158 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF-PREVQRDEVEQLVGGDENCAYFEVSAKKNSN  158 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh-ccccCHHHHHHHHHhcCCCEEEEEeCCCCCC
Confidence            999999999999998888653         224689999999999864 344566777776654 357899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027949          166 VEEVFFSIARDIK  178 (216)
Q Consensus       166 i~~l~~~l~~~i~  178 (216)
                      ++++|++|.+...
T Consensus       159 I~elf~~L~~~~~  171 (247)
T cd04143         159 LDEMFRALFSLAK  171 (247)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998653

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.97  E-value=4.8e-30  Score=188.41  Aligned_cols=160  Identities=34%  Similarity=0.637  Sum_probs=136.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEeC
Q 027949           18 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDV   97 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~   97 (216)
                      |+|+|.+|+|||||++++.+..+...+.++.... ....+..++..+.+.+|||+|++.+..++..+++.+|++|+|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFEN-YSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEee-eeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            5899999999999999999999887777766533 345667788888999999999999999999999999999999999


Q ss_pred             CCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEEecCCCC
Q 027949           98 TDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETSAKTNL  164 (216)
Q Consensus        98 ~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  164 (216)
                      ++++++..+. .|+..+....+ +.|+++|+||+|+.+..           ..+..+++..++...+. .++++||++|.
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  158 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFCP-NTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE  158 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhCC-CCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            9999999986 48888876554 79999999999985421           23566778889999986 99999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 027949          165 NVEEVFFSIARDIKQ  179 (216)
Q Consensus       165 gi~~l~~~l~~~i~~  179 (216)
                      |++++|+.|++.+.+
T Consensus       159 ~v~~lf~~l~~~~~~  173 (174)
T smart00174      159 GVREVFEEAIRAALN  173 (174)
T ss_pred             CHHHHHHHHHHHhcC
Confidence            999999999988753

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.97  E-value=7e-30  Score=190.38  Aligned_cols=159  Identities=30%  Similarity=0.501  Sum_probs=128.5

Q ss_pred             eEEEEEEcCCCCcHHHHHH-HHHcCC-----CCCccccceee-eEEEEE--------EEECCeEEEEEEEeCCCcccccc
Q 027949           15 LIKLLLIGDSGVGKSCLLL-RFSDGS-----FTTSFITTIGI-DFKIRT--------IELDGKRIKLQIWDTAGQERFRT   79 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~G~~~~~~   79 (216)
                      .+||+++|..|+|||||+. ++.+..     +...+.|+.+. +.....        +.+++..+.+.||||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            3899999999999999995 665543     34456666642 222211        25678889999999999875  3


Q ss_pred             ccccccccccEEEEEEeCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------------CCccC
Q 027949           80 ITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDES------------------KRAVP  140 (216)
Q Consensus        80 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------------~~~~~  140 (216)
                      +...+++++|++|+|||++++.+|..+. .|+..+....+ +.|+++|+||+||.+.                  .+.+.
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~  158 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP  158 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence            4566889999999999999999999997 58888876653 6899999999998641                  35678


Q ss_pred             hHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHH
Q 027949          141 TSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARD  176 (216)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  176 (216)
                      .++++.+++.++++|++|||++|.||+++|+.+++.
T Consensus       159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            889999999999999999999999999999998864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04135 Tc10 TC10 subfamily

Probab=99.97  E-value=1e-29  Score=186.70  Aligned_cols=160  Identities=30%  Similarity=0.581  Sum_probs=136.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+|+|++|+|||||++++....+...+.++.. +.....+..++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            5899999999999999999999988776766654 333446777888888999999999999999999999999999999


Q ss_pred             eCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEEecCC
Q 027949           96 DVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETSAKT  162 (216)
Q Consensus        96 d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  162 (216)
                      |++++.++..+. .|+..+... ..+.|+++|+||+|+.+..           ..+..+++..+++..++ +++++||++
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  158 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT  158 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence            999999999886 477777655 4579999999999985432           24566778888888886 899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027949          163 NLNVEEVFFSIARDI  177 (216)
Q Consensus       163 ~~gi~~l~~~l~~~i  177 (216)
                      |.|++++|+.+++++
T Consensus       159 ~~gi~~~f~~~~~~~  173 (174)
T cd04135         159 QKGLKTVFDEAILAI  173 (174)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999999876

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.97  E-value=6.6e-30  Score=184.76  Aligned_cols=154  Identities=25%  Similarity=0.427  Sum_probs=128.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+|+|+.|+|||||+.++....+...+.++.+  .....+.+++..+.+.+||++|.+.     ..+++++|++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~--~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG--RFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc--ceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            5899999999999999999998887765544422  2346678888888999999999964     34567899999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCC-CCCccChHHHHHHHHHh-CCeEEEEecCCCCCHHHHHHH
Q 027949           96 DVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDE-SKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEEVFFS  172 (216)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~  172 (216)
                      |++++++|..+..|+..+..... .+.|+++|+||.|+.. ..+.+..+++..+++.. ++.|++|||++|.||+++|.+
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~  153 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE  153 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence            99999999999999998877653 5689999999999853 24567777888888876 489999999999999999999


Q ss_pred             HHHH
Q 027949          173 IARD  176 (216)
Q Consensus       173 l~~~  176 (216)
                      +.+.
T Consensus       154 ~~~~  157 (158)
T cd04103         154 AAQK  157 (158)
T ss_pred             HHhh
Confidence            8754

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.97  E-value=1.5e-29  Score=185.78  Aligned_cols=158  Identities=35%  Similarity=0.609  Sum_probs=135.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+++|.+|+|||||++++....+...+.++. .+.....+..++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            589999999999999999999988887777765 3444556778888899999999999999999999999999999999


Q ss_pred             eCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhCC-eEEEEecCC
Q 027949           96 DVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETSAKT  162 (216)
Q Consensus        96 d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  162 (216)
                      |+++++++..+. .|+..+.... .+.|+++|+||+|+.+.           .+.+..+++..++...+. .++++||++
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~  158 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT  158 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence            999999999985 5887776543 36899999999998642           345667788899998887 999999999


Q ss_pred             CCCHHHHHHHHHH
Q 027949          163 NLNVEEVFFSIAR  175 (216)
Q Consensus       163 ~~gi~~l~~~l~~  175 (216)
                      |.|++++|+.++-
T Consensus       159 ~~~v~~lf~~~~~  171 (173)
T cd04130         159 QKNLKEVFDTAIL  171 (173)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999998764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd01892 Miro2 Miro2 subfamily

Probab=99.97  E-value=6.6e-30  Score=186.89  Aligned_cols=162  Identities=23%  Similarity=0.315  Sum_probs=137.7

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ..+||+|+|.+|+|||||++++++..+. ..+.++.+..+....+.+++..+.+.+||++|.+.+..++..+++++|+++
T Consensus         3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l   82 (169)
T cd01892           3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC   82 (169)
T ss_pred             eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence            4699999999999999999999999987 778888887777777888888889999999999999888899999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEecCCCCCHHHHHH
Q 027949           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVEEVFF  171 (216)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~  171 (216)
                      +|||++++.++..+..|+..+...  .+.|+++|+||+|+.+. ......+...++..+++ .++++||++|.|++++|+
T Consensus        83 lv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~  159 (169)
T cd01892          83 LVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQ-QQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFT  159 (169)
T ss_pred             EEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEccccccc-ccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHH
Confidence            999999999999988888765332  36899999999998543 22233445667777776 579999999999999999


Q ss_pred             HHHHHHH
Q 027949          172 SIARDIK  178 (216)
Q Consensus       172 ~l~~~i~  178 (216)
                      .|.+.+.
T Consensus       160 ~l~~~~~  166 (169)
T cd01892         160 KLATAAQ  166 (169)
T ss_pred             HHHHHhh
Confidence            9998875

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd00154 Rab Rab family

Probab=99.97  E-value=1.2e-29  Score=182.85  Aligned_cols=159  Identities=58%  Similarity=0.999  Sum_probs=142.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||...+...+..+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988877888888888888888888899999999999988888999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q 027949           96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR  175 (216)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  175 (216)
                      |+++++++..+..|+..+........|+++++||+|+.. ......++.+.++...+++++++||+++.|++++|++|.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~  159 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLED-QRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLAE  159 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccc-cccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHhC
Confidence            999999999999999988887656799999999999852 3455678888888888899999999999999999999863

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04177 RSR1 RSR1 subgroup

Probab=99.97  E-value=2.2e-29  Score=183.95  Aligned_cols=161  Identities=39%  Similarity=0.680  Sum_probs=138.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+++|.+|||||||++++.+..+...+.++.+. .....+.+++..+.+.+||+||++.+..++..+++.++++++||
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIED-SYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchh-eEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            78999999999999999999998887666666653 34566778888899999999999999999999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEecCCCCCHHHHHHHH
Q 027949           96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVFFSI  173 (216)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l  173 (216)
                      |+++++++..+..|...+.... ..+.|+++++||.|+.+ ......++...+++..+ ++++++||++|.|++++|.+|
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i  159 (168)
T cd04177          81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLED-DRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL  159 (168)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccc-cCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence            9999999999999988886643 34799999999999864 34456667777888877 799999999999999999999


Q ss_pred             HHHHH
Q 027949          174 ARDIK  178 (216)
Q Consensus       174 ~~~i~  178 (216)
                      +..++
T Consensus       160 ~~~~~  164 (168)
T cd04177         160 VRQII  164 (168)
T ss_pred             HHHHh
Confidence            88764

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04148 RGK RGK subfamily

Probab=99.97  E-value=3e-29  Score=190.74  Aligned_cols=167  Identities=31%  Similarity=0.458  Sum_probs=137.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccc-cccEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR-GAMGILL   93 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-~~d~~i~   93 (216)
                      +||+|+|.+|+|||||++++..+.+. ..+.++.+.+.....+.+++..+.+.+||++|.+.  .....+++ .+|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence            58999999999999999999888775 55556555466677788888889999999999972  23344556 8999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949           94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS  172 (216)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  172 (216)
                      |||++++.++..+..|+..+.... ..+.|+++|+||+|+.+ ...+..++...++...+++++++||++|.|++++|++
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~-~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~  157 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLAR-SREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEG  157 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccc-cceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence            999999999999999998887654 24799999999999865 3456667778888888899999999999999999999


Q ss_pred             HHHHHHHHhhccc
Q 027949          173 IARDIKQRLADTD  185 (216)
Q Consensus       173 l~~~i~~~~~~~~  185 (216)
                      |++.+........
T Consensus       158 l~~~~~~~~~~~~  170 (221)
T cd04148         158 IVRQIRLRRDSKE  170 (221)
T ss_pred             HHHHHHhhhcccc
Confidence            9999976554433

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.97  E-value=1.2e-29  Score=184.72  Aligned_cols=160  Identities=38%  Similarity=0.594  Sum_probs=133.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccc-cccccccccccccEEEEEE
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~~i~v~   95 (216)
                      ||+|+|++|+|||||+++++...+...+.++....+ ...+.+++..+.+.+||+||... .......+++.+|++|+||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            589999999999999999998877666666654333 45567788888999999999875 3445677889999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCC-CHHHHHHH
Q 027949           96 DVTDESSFNNIRNWIRNIEQHA--SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL-NVEEVFFS  172 (216)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~l~~~  172 (216)
                      |+++++++..+..|+..+....  ..+.|+++|+||+|+.+ ...+..+++..++...+++|+++||++|. |++++|.+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~  158 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLH-YRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHE  158 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHH-hCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHH
Confidence            9999999999999988887654  34799999999999854 34566778888898889999999999995 99999999


Q ss_pred             HHHHHH
Q 027949          173 IARDIK  178 (216)
Q Consensus       173 l~~~i~  178 (216)
                      |.+.+.
T Consensus       159 l~~~~~  164 (165)
T cd04146         159 LCREVR  164 (165)
T ss_pred             HHHHHh
Confidence            988654

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.97  E-value=1.4e-28  Score=178.68  Aligned_cols=162  Identities=40%  Similarity=0.669  Sum_probs=137.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+++|++|+|||||+++++...+...+.++.. +.....+..++..+.+.+||+||+..+...+..+++.++++++++
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcch-hhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            4899999999999999999999888766666554 334455677888899999999999999999999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q 027949           96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA  174 (216)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  174 (216)
                      |++++.++..+..|+..+.... ..+.|+++|+||+|+.+ ...........+...++++++++||++|+|++++|++|.
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  158 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED-KRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLV  158 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc-ccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHH
Confidence            9999999999999888887753 24799999999999864 233456667778888889999999999999999999998


Q ss_pred             HHHHH
Q 027949          175 RDIKQ  179 (216)
Q Consensus       175 ~~i~~  179 (216)
                      +.+.+
T Consensus       159 ~~~~~  163 (164)
T cd04139         159 REIRQ  163 (164)
T ss_pred             HHHHh
Confidence            87753

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.97  E-value=3.7e-28  Score=178.50  Aligned_cols=160  Identities=35%  Similarity=0.660  Sum_probs=132.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      .||+|+|++|||||||++++.+..+...+.++.+... ...+.+++..+.+.+|||+|++.+...+..+++++|++++||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            5899999999999999999999988877777765443 346677888889999999999999888888899999999999


Q ss_pred             eCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEEecCC
Q 027949           96 DVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETSAKT  162 (216)
Q Consensus        96 d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  162 (216)
                      |+++++++..+. .|+..+.... .+.|+++|+||+|+.+..           ..+.....+.++...+. .+++|||++
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  159 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT  159 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence            999999998885 4777776543 378999999999985421           12334567777777774 899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027949          163 NLNVEEVFFSIARDI  177 (216)
Q Consensus       163 ~~gi~~l~~~l~~~i  177 (216)
                      |.|++++|.+|.+.+
T Consensus       160 ~~~v~~lf~~l~~~~  174 (175)
T cd01870         160 KEGVREVFEMATRAA  174 (175)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            999999999998764

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd00876 Ras Ras family

Probab=99.97  E-value=1.5e-28  Score=177.68  Aligned_cols=159  Identities=41%  Similarity=0.719  Sum_probs=137.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (216)
                      ||+|+|++|||||||++++++..+...+.++.. +.....+..++..+.+.+||+||...+...+..+++.+|++++|||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999998887766666655 5556667777777899999999999888888899999999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q 027949           97 VTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR  175 (216)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  175 (216)
                      +++++++..+..|+..+..... .+.|+++|+||+|+.+ ......+.+..++...+++++++|++++.|++++|++|++
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~  158 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLEN-ERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVR  158 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccc-cceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHh
Confidence            9999999999998888877654 5799999999999865 3455667888888888899999999999999999999987


Q ss_pred             HH
Q 027949          176 DI  177 (216)
Q Consensus       176 ~i  177 (216)
                      .+
T Consensus       159 ~i  160 (160)
T cd00876         159 EI  160 (160)
T ss_pred             hC
Confidence            53

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04149 Arf6 Arf6 subfamily

Probab=99.96  E-value=7.7e-29  Score=181.05  Aligned_cols=154  Identities=21%  Similarity=0.396  Sum_probs=122.1

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..++|+++|.+|+|||||++++....+.. +.++.+.+..  .+...  .+.+.+||++|++.+..++..+++.+|++|+
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~   82 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTYK--NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   82 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            35899999999999999999998777653 4566665443  33344  3889999999999998889999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH-----hCCeEEEEecCCCCCHH
Q 027949           94 VYDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKRAVPTSKGQALADE-----YGIKFFETSAKTNLNVE  167 (216)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~  167 (216)
                      |||++++.++..+..|+..+... ...+.|++||+||+|+.+   ....+++..+...     ..+.++++||++|.|++
T Consensus        83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~  159 (168)
T cd04149          83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD---AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY  159 (168)
T ss_pred             EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc---CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence            99999999999888877666543 224689999999999854   2345555555421     23578999999999999


Q ss_pred             HHHHHHHH
Q 027949          168 EVFFSIAR  175 (216)
Q Consensus       168 ~l~~~l~~  175 (216)
                      ++|+||.+
T Consensus       160 ~~~~~l~~  167 (168)
T cd04149         160 EGLTWLSS  167 (168)
T ss_pred             HHHHHHhc
Confidence            99999975

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.96  E-value=7.3e-29  Score=183.66  Aligned_cols=167  Identities=22%  Similarity=0.356  Sum_probs=130.3

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEE-CCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      .+||+++|.+|||||||++++....+... .++.+.......+.. ++..+.+.+||++|.+.+..++..+++.+|++|+
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF   81 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence            38999999999999999999998877643 565555554444443 3355899999999999998899999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH------hCCeEEEEecCCCCCH
Q 027949           94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADE------YGIKFFETSAKTNLNV  166 (216)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~gi  166 (216)
                      |+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+   ....++...+...      .+++++++||++|+|+
T Consensus        82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi  158 (183)
T cd04152          82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN---ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGL  158 (183)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc---cCCHHHHHHHhCccccCCCCceEEEEeecccCCCH
Confidence            999999999988888877765532 24689999999999853   2233444443321      1256899999999999


Q ss_pred             HHHHHHHHHHHHHHhhccc
Q 027949          167 EEVFFSIARDIKQRLADTD  185 (216)
Q Consensus       167 ~~l~~~l~~~i~~~~~~~~  185 (216)
                      ++++++|.+.+.+.++..+
T Consensus       159 ~~l~~~l~~~l~~~~~~~~  177 (183)
T cd04152         159 QEGLEKLYEMILKRRKMLR  177 (183)
T ss_pred             HHHHHHHHHHHHHHHhhhh
Confidence            9999999999987665544

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.96  E-value=2.4e-28  Score=183.09  Aligned_cols=161  Identities=32%  Similarity=0.506  Sum_probs=132.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (216)
                      ||+|+|.+|+|||||+++++...+...+.++.. +.....+.+.+..+.+.+||++|+..+..++..++..+|++|+|||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            689999999999999999999888766656553 3445567778877899999999999988888889999999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHH-HhCCeEEEEecCCCCCHHHHHHHHH
Q 027949           97 VTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALAD-EYGIKFFETSAKTNLNVEEVFFSIA  174 (216)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~l~  174 (216)
                      ++++.++..+..|+..+..... .+.|+++|+||+|+.+....+..+....... ..+++++++||++|.|++++|++|+
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  159 (198)
T cd04147          80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL  159 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999888877544 4799999999999865334444444444333 4457899999999999999999999


Q ss_pred             HHHH
Q 027949          175 RDIK  178 (216)
Q Consensus       175 ~~i~  178 (216)
                      +.+.
T Consensus       160 ~~~~  163 (198)
T cd04147         160 RQAN  163 (198)
T ss_pred             HHhh
Confidence            8775

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.96  E-value=1.4e-28  Score=181.63  Aligned_cols=159  Identities=19%  Similarity=0.375  Sum_probs=123.5

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..+||+++|.+|||||||++++....+. .+.|+.+.+.  ..+..++  +.+.+||+||++.+..++..+++++|++|+
T Consensus        16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~--~~~~~~~--~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~   90 (181)
T PLN00223         16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeE--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            4489999999999999999999877765 3566666443  3445554  889999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh-----CCeEEEEecCCCCCHH
Q 027949           94 VYDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKRAVPTSKGQALADEY-----GIKFFETSAKTNLNVE  167 (216)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~  167 (216)
                      |||+++++++..+..++..+... ...+.|++||+||+|+.+.   ...+++.......     .+.++++||++|+|++
T Consensus        91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~---~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~  167 (181)
T PLN00223         91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA---MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
T ss_pred             EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC---CCHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence            99999999999888777665432 2246899999999998643   2333333322211     1346689999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027949          168 EVFFSIARDIKQR  180 (216)
Q Consensus       168 ~l~~~l~~~i~~~  180 (216)
                      ++|+||.+.+..+
T Consensus       168 e~~~~l~~~~~~~  180 (181)
T PLN00223        168 EGLDWLSNNIANK  180 (181)
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999887653

>cd00157 Rho Rho (Ras homology) family

Probab=99.96  E-value=5.5e-28  Score=176.78  Aligned_cols=158  Identities=37%  Similarity=0.692  Sum_probs=131.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+|+|.+|+|||||+++|.+..+...+.++.. +.....+...+..+.+.+||+||++.+......+++.+|++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            5899999999999999999999988666666554 344455677788899999999999988888888889999999999


Q ss_pred             eCCCHhHHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCCCC----------ccChHHHHHHHHHhCC-eEEEEecCCC
Q 027949           96 DVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADMDESKR----------AVPTSKGQALADEYGI-KFFETSAKTN  163 (216)
Q Consensus        96 d~~~~~~~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~  163 (216)
                      |.+++.++..... |+..+..... +.|+++|+||+|+.+...          .+..++...++..+++ +++++||++|
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  158 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHYCP-NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ  158 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence            9999999888765 6666665543 799999999999865432          2346777888888887 9999999999


Q ss_pred             CCHHHHHHHHHH
Q 027949          164 LNVEEVFFSIAR  175 (216)
Q Consensus       164 ~gi~~l~~~l~~  175 (216)
                      .|++++|++|++
T Consensus       159 ~gi~~l~~~i~~  170 (171)
T cd00157         159 EGVKEVFEEAIR  170 (171)
T ss_pred             CCHHHHHHHHhh
Confidence            999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04129 Rho2 Rho2 subfamily

Probab=99.96  E-value=6.1e-28  Score=179.30  Aligned_cols=163  Identities=35%  Similarity=0.607  Sum_probs=134.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      .||+|+|++|+|||||++++....+...+.++....+ ...+.+++..+.+.+||++|++.+......+++.+|+++++|
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            5899999999999999999998777666666554333 345677787788999999999888877777889999999999


Q ss_pred             eCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC---------CCccChHHHHHHHHHhCC-eEEEEecCCCC
Q 027949           96 DVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDES---------KRAVPTSKGQALADEYGI-KFFETSAKTNL  164 (216)
Q Consensus        96 d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  164 (216)
                      |+++.+++..+. .|+..+....+ ..|+++|+||+|+.+.         ......++...+++..+. .|+++||++|.
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  159 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE  159 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence            999999999987 58888876554 6999999999998532         233445678888888885 89999999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q 027949          165 NVEEVFFSIARDIKQR  180 (216)
Q Consensus       165 gi~~l~~~l~~~i~~~  180 (216)
                      |++++|+++.+.++..
T Consensus       160 ~v~~~f~~l~~~~~~~  175 (187)
T cd04129         160 GVDDVFEAATRAALLV  175 (187)
T ss_pred             CHHHHHHHHHHHHhcc
Confidence            9999999999887554

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.96  E-value=7.4e-28  Score=177.76  Aligned_cols=164  Identities=36%  Similarity=0.598  Sum_probs=138.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      .||+|+|.+|+|||||++++.+..+...+.++..... ...+..++..+.+.+||+||+..+...+..++..+++++++|
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            6899999999999999999999887766666554333 455677777788999999999998888888999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q 027949           96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA  174 (216)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  174 (216)
                      |.++..++..+..|+..+.... ..+.|+++|+||+|+.. .+.....+...++...+++++++||+++.|++++|.+|.
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  159 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHT-QRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLI  159 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhh-cCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999999887776653 34689999999999864 344455666777788889999999999999999999999


Q ss_pred             HHHHHHh
Q 027949          175 RDIKQRL  181 (216)
Q Consensus       175 ~~i~~~~  181 (216)
                      +.+....
T Consensus       160 ~~~~~~~  166 (180)
T cd04137         160 EEIEKVE  166 (180)
T ss_pred             HHHHHhc
Confidence            9887654

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.96  E-value=1.3e-28  Score=182.10  Aligned_cols=159  Identities=22%  Similarity=0.420  Sum_probs=122.6

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+|+|++|||||||++++..+.+.. +.++.+.+.  ..+..++  +.+.+||++|++.+..++..+++.+|++|+|
T Consensus        17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v   91 (182)
T PTZ00133         17 EVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNV--ETVEYKN--LKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV   91 (182)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence            4899999999999999999998777654 556665443  3444444  8899999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEecCCCCCHHH
Q 027949           95 YDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVEE  168 (216)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~  168 (216)
                      +|+++++++..+..++..+... .....|++||+||.|+.+.   ....++.....     ...+.++++||++|.|+++
T Consensus        92 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e  168 (182)
T PTZ00133         92 VDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA---MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYE  168 (182)
T ss_pred             EeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC---CCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHH
Confidence            9999999999888776665432 2236899999999998542   22222222211     1224677999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 027949          169 VFFSIARDIKQRL  181 (216)
Q Consensus       169 l~~~l~~~i~~~~  181 (216)
                      +|+||.+.+.+.+
T Consensus       169 ~~~~l~~~i~~~~  181 (182)
T PTZ00133        169 GLDWLSANIKKSM  181 (182)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999998887653

>cd04158 ARD1 ARD1 subfamily

Probab=99.96  E-value=2.6e-28  Score=178.49  Aligned_cols=156  Identities=19%  Similarity=0.376  Sum_probs=125.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (216)
                      ||+++|.+|||||||++++.+..+.. +.++.+...  ..+..++  +.+.+||+||+..+...+..+++.+|+++||+|
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~--~~~~~~~--~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNV--ETVEYKN--LKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeE--EEEEECC--EEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            58999999999999999999886653 566655444  3445554  789999999999988889999999999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC------CeEEEEecCCCCCHHHH
Q 027949           97 VTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYG------IKFFETSAKTNLNVEEV  169 (216)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l  169 (216)
                      +++++++..+..|+..+.... ..+.|++||+||+|+.+   ....+++..++...+      +.++++||++|.|++++
T Consensus        76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~  152 (169)
T cd04158          76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG---ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEG  152 (169)
T ss_pred             CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc---CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHH
Confidence            999999999988888776532 23589999999999853   345566666554222      37889999999999999


Q ss_pred             HHHHHHHHHHH
Q 027949          170 FFSIARDIKQR  180 (216)
Q Consensus       170 ~~~l~~~i~~~  180 (216)
                      |+||.+.+...
T Consensus       153 f~~l~~~~~~~  163 (169)
T cd04158         153 LDWLSRQLVAA  163 (169)
T ss_pred             HHHHHHHHhhc
Confidence            99998876653

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.96  E-value=8.7e-29  Score=179.24  Aligned_cols=152  Identities=20%  Similarity=0.427  Sum_probs=118.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+++|.+|||||||++++..+.+. .+.|+.+...  ..+....  +.+.+||++|++.+..++..+++++|++||||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999877776 3566666443  3344444  88999999999999999999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHH-HHHHH----HHhCCeEEEEecCCCCCHHHH
Q 027949           96 DVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKRAVPTSK-GQALA----DEYGIKFFETSAKTNLNVEEV  169 (216)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~-~~~~~----~~~~~~~~~~Sa~~~~gi~~l  169 (216)
                      |++++.++..+..|+..+... .....|++|++||+|+.+.   ....+ ...+.    ....+.++++||++|.|++++
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~  152 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA---MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEG  152 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC---CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHH
Confidence            999999999998877766432 2235899999999998542   12222 22221    122356789999999999999


Q ss_pred             HHHHHH
Q 027949          170 FFSIAR  175 (216)
Q Consensus       170 ~~~l~~  175 (216)
                      |+||.+
T Consensus       153 ~~~l~~  158 (159)
T cd04150         153 LDWLSN  158 (159)
T ss_pred             HHHHhc
Confidence            999965

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.96  E-value=1.8e-28  Score=180.35  Aligned_cols=155  Identities=19%  Similarity=0.392  Sum_probs=121.0

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+++|.+|+|||||++++....+. .+.|+.+.+..  .+...+  +.+.+||++|++.+..++..+++++|++|+|
T Consensus        13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v   87 (175)
T smart00177       13 EMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTYKN--ISFTVWDVGGQDKIRPLWRHYYTNTQGLIFV   87 (175)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEECC--EEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence            589999999999999999999877664 35566665443  344444  7899999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEecCCCCCHHH
Q 027949           95 YDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVEE  168 (216)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~  168 (216)
                      ||+++++++.....|+..+... ...+.|++||+||.|+.+..   ..+++.....     ...+.++++||++|.|+++
T Consensus        88 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e  164 (175)
T smart00177       88 VDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM---KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYE  164 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC---CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHH
Confidence            9999999999988887776543 22468999999999985422   2222222221     1234577899999999999


Q ss_pred             HHHHHHHHH
Q 027949          169 VFFSIARDI  177 (216)
Q Consensus       169 l~~~l~~~i  177 (216)
                      +|+||.+.+
T Consensus       165 ~~~~l~~~~  173 (175)
T smart00177      165 GLTWLSNNL  173 (175)
T ss_pred             HHHHHHHHh
Confidence            999998775

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.96  E-value=7.6e-30  Score=171.13  Aligned_cols=164  Identities=50%  Similarity=0.925  Sum_probs=150.3

Q ss_pred             EEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEeC
Q 027949           19 LLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDV   97 (216)
Q Consensus        19 ~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~   97 (216)
                      +++|.+++|||.|+-++....+. ....++.++++....+..++..+++++|||.|+++|++....+++.+|+++++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            47899999999999888777664 55668899999999999999999999999999999999999999999999999999


Q ss_pred             CCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Q 027949           98 TDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI  177 (216)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  177 (216)
                      .+..+|+....|+.++.++......+++++||+|+.+ ++.+..++.+.++..+++|+.++||++|.+++..|..|.+.+
T Consensus        81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~-er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l  159 (192)
T KOG0083|consen   81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAH-ERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEEL  159 (192)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccch-hhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHH
Confidence            9999999999999999999888889999999999965 467888999999999999999999999999999999999988


Q ss_pred             HHHhhc
Q 027949          178 KQRLAD  183 (216)
Q Consensus       178 ~~~~~~  183 (216)
                      .+..-.
T Consensus       160 ~k~~~~  165 (192)
T KOG0083|consen  160 KKLKMG  165 (192)
T ss_pred             HHhccC
Confidence            876443

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.96  E-value=9.8e-29  Score=179.84  Aligned_cols=153  Identities=20%  Similarity=0.324  Sum_probs=123.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEeC
Q 027949           18 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDV   97 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~   97 (216)
                      |+++|.+|||||||++++.+..+...+.++.+...  ..+..  ..+.+.+||++|+..+..++..+++++|++|+|||+
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~--~~i~~--~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   77 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS--VAIPT--QDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS   77 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce--EEEee--CCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence            79999999999999999999887777777776442  23333  348899999999999999999999999999999999


Q ss_pred             CCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccC---hHHHHHHHHHhCCeEEEEecCC------CCCHHH
Q 027949           98 TDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVP---TSKGQALADEYGIKFFETSAKT------NLNVEE  168 (216)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~---~~~~~~~~~~~~~~~~~~Sa~~------~~gi~~  168 (216)
                      +++.++..+..|+..+.... .+.|+++|+||.|+........   ...+..++...++.++++||++      ++|+++
T Consensus        78 t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~  156 (164)
T cd04162          78 ADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKD  156 (164)
T ss_pred             CCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHH
Confidence            99999999988888776543 4799999999999865321111   0123455566678999999988      999999


Q ss_pred             HHHHHHH
Q 027949          169 VFFSIAR  175 (216)
Q Consensus       169 l~~~l~~  175 (216)
                      +|+.++.
T Consensus       157 ~~~~~~~  163 (164)
T cd04162         157 LLSQLIN  163 (164)
T ss_pred             HHHHHhc
Confidence            9998864

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04154 Arl2 Arl2 subfamily

Probab=99.96  E-value=7.9e-28  Score=176.56  Aligned_cols=155  Identities=20%  Similarity=0.384  Sum_probs=122.5

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ...++|+++|++|||||||++++.+..+. .+.++.+  +....+.+++  +.+.+||+||++.++.++..+++.+|+++
T Consensus        12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g--~~~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   86 (173)
T cd04154          12 EREMRILILGLDNAGKTTILKKLLGEDID-TISPTLG--FQIKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDALI   86 (173)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccc--cceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            34589999999999999999999987553 3445544  3334455554  78999999999988888899999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEecCCCCCH
Q 027949           93 LVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNV  166 (216)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi  166 (216)
                      +|+|++++.++.....|+..+... ...+.|+++|+||+|+.+.   ...+++..+..     ..+++++++||++|.|+
T Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  163 (173)
T cd04154          87 WVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA---LSEEEIREALELDKISSHHWRIQPCSAVTGEGL  163 (173)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC---CCHHHHHHHhCccccCCCceEEEeccCCCCcCH
Confidence            999999999999888887776542 2347999999999998642   23444444442     23578999999999999


Q ss_pred             HHHHHHHHH
Q 027949          167 EEVFFSIAR  175 (216)
Q Consensus       167 ~~l~~~l~~  175 (216)
                      +++|+||++
T Consensus       164 ~~l~~~l~~  172 (173)
T cd04154         164 LQGIDWLVD  172 (173)
T ss_pred             HHHHHHHhc
Confidence            999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04157 Arl6 Arl6 subfamily

Probab=99.96  E-value=3.1e-28  Score=176.60  Aligned_cols=152  Identities=19%  Similarity=0.369  Sum_probs=116.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC-CCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +|+++|.+|||||||+++|.+..+ ...+.++.+...  ..+...+  +.+.+||+||...+..++..+++.+|++|+|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV--ESFEKGN--LSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce--EEEEECC--EEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            589999999999999999998753 445566665433  2333444  78999999999999999999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEecCCCCCHH
Q 027949           96 DVTDESSFNNIRNWIRNIEQHA---SDNVNKILVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVE  167 (216)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~  167 (216)
                      |++++.++..+..|+..+....   ..+.|+++|+||+|+.+..   ...+......     ...+.++++||++|.|++
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~---~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~  153 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL---TAVKITQLLGLENIKDKPWHIFASNALTGEGLD  153 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC---CHHHHHHHhCCccccCceEEEEEeeCCCCCchH
Confidence            9999999988888877765432   2479999999999986432   2222222211     123468999999999999


Q ss_pred             HHHHHHHH
Q 027949          168 EVFFSIAR  175 (216)
Q Consensus       168 ~l~~~l~~  175 (216)
                      ++|+||.+
T Consensus       154 ~~~~~l~~  161 (162)
T cd04157         154 EGVQWLQA  161 (162)
T ss_pred             HHHHHHhc
Confidence            99999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.96  E-value=5.8e-27  Score=177.79  Aligned_cols=165  Identities=32%  Similarity=0.612  Sum_probs=142.0

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      ....+||+++|++|||||||+++++.+.+...+.++.+.+.....+..++..+.+.+||++|.+.+..++..++++++++
T Consensus         6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~   85 (215)
T PTZ00132          6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCA   85 (215)
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEE
Confidence            34559999999999999999999888888888888888888777777788889999999999999988888899999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q 027949           92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFF  171 (216)
Q Consensus        92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  171 (216)
                      ++|||+++..++..+..|+..+.... .+.|+++++||+|+.+  ..... ....++...++.++++||++|.|++++|.
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~--~~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~  161 (215)
T PTZ00132         86 IIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKD--RQVKA-RQITFHRKKNLQYYDISAKSNYNFEKPFL  161 (215)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCcc--ccCCH-HHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999998887654 4689999999999853  22222 33456777789999999999999999999


Q ss_pred             HHHHHHHHH
Q 027949          172 SIARDIKQR  180 (216)
Q Consensus       172 ~l~~~i~~~  180 (216)
                      +|.+.+...
T Consensus       162 ~ia~~l~~~  170 (215)
T PTZ00132        162 WLARRLTND  170 (215)
T ss_pred             HHHHHHhhc
Confidence            999998764

>cd01893 Miro1 Miro1 subfamily

Probab=99.96  E-value=2e-27  Score=173.26  Aligned_cols=161  Identities=30%  Similarity=0.446  Sum_probs=123.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+|+|.+|||||||++++.++.+...+..+.  ........+++..+.+.+||++|...+...+..+++.+|++++||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL--PEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc--cceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            489999999999999999999988865533322  122333455666789999999999887777777889999999999


Q ss_pred             eCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc-ChHHHHHHHHHhC--CeEEEEecCCCCCHHHHHH
Q 027949           96 DVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESKRAV-PTSKGQALADEYG--IKFFETSAKTNLNVEEVFF  171 (216)
Q Consensus        96 d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~  171 (216)
                      |++++.++..+. .|+..+..... +.|+++|+||+|+.+..... ..+.+..++..+.  ..++++||++|.|++++|+
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~~~-~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  157 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence            999999999975 57777766543 79999999999996533211 1233333333332  3899999999999999999


Q ss_pred             HHHHHHHH
Q 027949          172 SIARDIKQ  179 (216)
Q Consensus       172 ~l~~~i~~  179 (216)
                      .+.+.+.+
T Consensus       158 ~~~~~~~~  165 (166)
T cd01893         158 YAQKAVLH  165 (166)
T ss_pred             HHHHHhcC
Confidence            99988764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.96  E-value=2.5e-27  Score=174.07  Aligned_cols=157  Identities=29%  Similarity=0.519  Sum_probs=127.2

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ...++|+++|+.||||||+++++...... ...||.+  .....+.+++  +.+.+||.+|+..++..|..++..+|++|
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g--~~~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI   86 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIG--FNIEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII   86 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESS--EEEEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccc--cccceeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence            55699999999999999999999976544 3556655  5556677777  78999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHH------HhCCeEEEEecCCCCC
Q 027949           93 LVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKRAVPTSKGQALAD------EYGIKFFETSAKTNLN  165 (216)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~g  165 (216)
                      ||+|.++.+.+.+....+..+... .-.+.|++|++||.|+.++   ...+++.....      ...+.++.|||.+|+|
T Consensus        87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~---~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G  163 (175)
T PF00025_consen   87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA---MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG  163 (175)
T ss_dssp             EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS---STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred             EEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc---chhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence            999999999998888877776553 2247999999999998653   34444444332      2346799999999999


Q ss_pred             HHHHHHHHHHHH
Q 027949          166 VEEVFFSIARDI  177 (216)
Q Consensus       166 i~~l~~~l~~~i  177 (216)
                      +.+.++||.+.+
T Consensus       164 v~e~l~WL~~~~  175 (175)
T PF00025_consen  164 VDEGLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC
Confidence            999999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.95  E-value=1.6e-27  Score=173.95  Aligned_cols=154  Identities=22%  Similarity=0.331  Sum_probs=120.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (216)
                      +|+++|.+|||||||++++.+. +...+.++.+..  ...+..++  +.+.+||+||+..++.++..+++++|++|+|||
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLDK--YEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEECC--EEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            4799999999999999999976 555666776643  34555555  789999999999999999999999999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHH---HHHHHHHh--CCeEEEEecCCC------C
Q 027949           97 VTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSK---GQALADEY--GIKFFETSAKTN------L  164 (216)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~---~~~~~~~~--~~~~~~~Sa~~~------~  164 (216)
                      ++++.++..+..|+..+.... ..+.|++||+||+|+.+.........   +..++.+.  .+.+++|||++|      .
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~  155 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP  155 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence            999999999998888876542 24789999999999865332111111   12233223  357888999998      8


Q ss_pred             CHHHHHHHHHH
Q 027949          165 NVEEVFFSIAR  175 (216)
Q Consensus       165 gi~~l~~~l~~  175 (216)
                      |+++.|+||.+
T Consensus       156 g~~~~~~wl~~  166 (167)
T cd04161         156 SIVEGLRWLLA  166 (167)
T ss_pred             CHHHHHHHHhc
Confidence            99999999975

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.95  E-value=1.2e-26  Score=172.22  Aligned_cols=164  Identities=41%  Similarity=0.676  Sum_probs=150.0

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      ..||+++|.+|+|||+|+.++....+...+.|+.. +.+...+.+++..+.+.|+||+|++++..+...+++++|++++|
T Consensus         3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV   81 (196)
T KOG0395|consen    3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV   81 (196)
T ss_pred             ceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence            47999999999999999999999999999999887 66777888899999999999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q 027949           95 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI  173 (216)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  173 (216)
                      |++++..+|+.+..++..+.+.. ....|+++|+||+|+.. .+.+..++++.++...+++|+++||+.+.+++++|..|
T Consensus        82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~-~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L  160 (196)
T KOG0395|consen   82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLER-ERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL  160 (196)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchh-ccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence            99999999999999998885433 34579999999999965 47889999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027949          174 ARDIKQR  180 (216)
Q Consensus       174 ~~~i~~~  180 (216)
                      ++.+...
T Consensus       161 ~r~~~~~  167 (196)
T KOG0395|consen  161 VREIRLP  167 (196)
T ss_pred             HHHHHhh
Confidence            9988873

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.95  E-value=9.9e-27  Score=161.32  Aligned_cols=165  Identities=22%  Similarity=0.381  Sum_probs=133.3

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      ++..++|+++|..||||||++++|.+.... ...|+.+  +...++.+++  +++++||.+|+...+..|.+||...|++
T Consensus        13 kerE~riLiLGLdNsGKTti~~kl~~~~~~-~i~pt~g--f~Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdgl   87 (185)
T KOG0073|consen   13 KEREVRILILGLDNSGKTTIVKKLLGEDTD-TISPTLG--FQIKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGL   87 (185)
T ss_pred             hhheeEEEEEecCCCCchhHHHHhcCCCcc-ccCCccc--eeeEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence            344699999999999999999999988743 3445544  6667777777  8999999999999999999999999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHH-HhcCCCCcEEEEEeCCCCCCCCCccChH---HHHHHHHHhCCeEEEEecCCCCCHH
Q 027949           92 LLVYDVTDESSFNNIRNWIRNIE-QHASDNVNKILVGNKADMDESKRAVPTS---KGQALADEYGIKFFETSAKTNLNVE  167 (216)
Q Consensus        92 i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~p~ivv~nK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~gi~  167 (216)
                      |+|||.+|+..+++....++.+. +..-.+.|++|++||.|+..+-......   .+..++....++++.||+.+|+++.
T Consensus        88 IwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~  167 (185)
T KOG0073|consen   88 IWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLL  167 (185)
T ss_pred             EEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHH
Confidence            99999999999988877665553 3333478999999999997543332222   2344456667999999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 027949          168 EVFFSIARDIKQRL  181 (216)
Q Consensus       168 ~l~~~l~~~i~~~~  181 (216)
                      +-++||...+..+.
T Consensus       168 ~gidWL~~~l~~r~  181 (185)
T KOG0073|consen  168 EGIDWLCDDLMSRL  181 (185)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999988743

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.95  E-value=3.1e-27  Score=171.07  Aligned_cols=152  Identities=26%  Similarity=0.472  Sum_probs=116.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (216)
                      +|+++|++|||||||++++.+..+.. ..++.+..  ...+... ..+.+.+||++|+..+...+..++..+|++|+|+|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~--~~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFN--VEMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcc--eEEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            58999999999999999999988754 34554433  3334433 34789999999999888888889999999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHH------HHHhCCeEEEEecCCCCCHHHH
Q 027949           97 VTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQAL------ADEYGIKFFETSAKTNLNVEEV  169 (216)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~gi~~l  169 (216)
                      ++++.++..+..|+..+.... ..+.|+++|+||+|+...   ...+++...      ....+++++++||++|+|++++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~  153 (160)
T cd04156          77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA---LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEA  153 (160)
T ss_pred             CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC---cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHH
Confidence            999999888888777765432 247999999999998532   122222222      2223457999999999999999


Q ss_pred             HHHHHH
Q 027949          170 FFSIAR  175 (216)
Q Consensus       170 ~~~l~~  175 (216)
                      |++|.+
T Consensus       154 ~~~i~~  159 (160)
T cd04156         154 FRKLAS  159 (160)
T ss_pred             HHHHhc
Confidence            999864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.95  E-value=1.4e-26  Score=170.07  Aligned_cols=153  Identities=23%  Similarity=0.353  Sum_probs=118.7

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .++|+++|.+|+|||||++++....+.. +.++.+...  ..+.+++  +.+.+||+||++.+...+..+++.+|++|+|
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V   89 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV--EEIVYKN--IRFLMWDIGGQESLRSSWNTYYTNTDAVILV   89 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce--EEEEECC--eEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence            4899999999999999999999877664 445555333  3455554  7899999999999988899999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHH-HHHH----HHhCCeEEEEecCCCCCHHH
Q 027949           95 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKG-QALA----DEYGIKFFETSAKTNLNVEE  168 (216)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~----~~~~~~~~~~Sa~~~~gi~~  168 (216)
                      +|+++++++.....++..+.... ..+.|+++++||+|+.+.   ...++. ..+.    ...+++++++||++|+|+++
T Consensus        90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~---~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e  166 (174)
T cd04153          90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA---MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE  166 (174)
T ss_pred             EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC---CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence            99999998888877666664432 246899999999998542   223332 2221    22346799999999999999


Q ss_pred             HHHHHHH
Q 027949          169 VFFSIAR  175 (216)
Q Consensus       169 l~~~l~~  175 (216)
                      +|+||.+
T Consensus       167 ~~~~l~~  173 (174)
T cd04153         167 GLDWIAS  173 (174)
T ss_pred             HHHHHhc
Confidence            9999975

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.95  E-value=3.6e-26  Score=170.76  Aligned_cols=147  Identities=21%  Similarity=0.408  Sum_probs=123.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEEC-----CeEEEEEEEeCCCccccccccccccccccE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-----GKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      +||+++|.+|+|||||++++.+..+...+.++.+.+.....+.++     +..+.+.|||++|++.+..++..+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999999888888888877776666663     466899999999999999999999999999


Q ss_pred             EEEEEeCCCHhHHHHHHHHHHHHHHhc-------------------CCCCcEEEEEeCCCCCCCCCccChH----HHHHH
Q 027949           91 ILLVYDVTDESSFNNIRNWIRNIEQHA-------------------SDNVNKILVGNKADMDESKRAVPTS----KGQAL  147 (216)
Q Consensus        91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~-------------------~~~~p~ivv~nK~Dl~~~~~~~~~~----~~~~~  147 (216)
                      +|+|||++++++++.+..|+..+....                   ..+.|++||+||.|+.+. +.....    ....+
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~-r~~~~~~~~~~~~~i  159 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE-KESSGNLVLTARGFV  159 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh-cccchHHHhhHhhhH
Confidence            999999999999999999999886531                   246899999999998653 222322    24466


Q ss_pred             HHHhCCeEEEEecCCC
Q 027949          148 ADEYGIKFFETSAKTN  163 (216)
Q Consensus       148 ~~~~~~~~~~~Sa~~~  163 (216)
                      +.+.+++.++.++.++
T Consensus       160 a~~~~~~~i~~~c~~~  175 (202)
T cd04102         160 AEQGNAEEINLNCTNG  175 (202)
T ss_pred             HHhcCCceEEEecCCc
Confidence            7788999999998865

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd00879 Sar1 Sar1 subfamily

Probab=99.95  E-value=1.4e-26  Score=172.40  Aligned_cols=155  Identities=22%  Similarity=0.342  Sum_probs=123.3

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ...+|+++|++|||||||++++.+..+. .+.++.+.  ....+.+++  +.+.+||+||+..+...+..+++.+|++++
T Consensus        18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~--~~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil   92 (190)
T cd00879          18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHP--TSEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF   92 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            3589999999999999999999987764 34454443  334566666  788999999998888888889999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH----------------hCCeEE
Q 027949           94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADE----------------YGIKFF  156 (216)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~  156 (216)
                      |+|+++..++.....|+..+.... ..+.|+++++||+|+..   ....++++.+...                ..+.++
T Consensus        93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (190)
T cd00879          93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG---AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF  169 (190)
T ss_pred             EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC---CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence            999999998888878777776533 24689999999999853   3445566655542                225799


Q ss_pred             EEecCCCCCHHHHHHHHHHH
Q 027949          157 ETSAKTNLNVEEVFFSIARD  176 (216)
Q Consensus       157 ~~Sa~~~~gi~~l~~~l~~~  176 (216)
                      +|||++|+|++++|.||.+.
T Consensus       170 ~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         170 MCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             EeEecCCCChHHHHHHHHhh
Confidence            99999999999999999875

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PTZ00099 rab6; Provisional

Probab=99.95  E-value=5.1e-26  Score=166.97  Aligned_cols=144  Identities=40%  Similarity=0.675  Sum_probs=126.5

Q ss_pred             CCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcC
Q 027949           39 SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS  118 (216)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~  118 (216)
                      .|...+.++.+.++....+.+++..+.+.||||+|++.+..++..+++++|++|+|||++++++|..+..|+..+.....
T Consensus         4 ~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~   83 (176)
T PTZ00099          4 TFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG   83 (176)
T ss_pred             CcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence            45667888888888888888999999999999999999999999999999999999999999999999999998876655


Q ss_pred             CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHHHhhc
Q 027949          119 DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD  183 (216)
Q Consensus       119 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~  183 (216)
                      .+.|++||+||+|+.+ ...+..+++..++..+++.|+++||++|.|++++|++|++.+.+..+.
T Consensus        84 ~~~piilVgNK~DL~~-~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~  147 (176)
T PTZ00099         84 KDVIIALVGNKTDLGD-LRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS  147 (176)
T ss_pred             CCCeEEEEEECccccc-ccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence            5789999999999964 344677788888888899999999999999999999999998765433

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.95  E-value=5.4e-27  Score=170.69  Aligned_cols=167  Identities=36%  Similarity=0.626  Sum_probs=149.6

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEEC-CeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ..+|++|||..++|||+|+-.+..+.|+..+.|+.. +-+...+.++ +..+.+.+|||.|+++|+.++...++++|+++
T Consensus         3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl   81 (198)
T KOG0393|consen    3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL   81 (198)
T ss_pred             eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence            458999999999999999999999999999999987 6666777884 99999999999999999998888999999999


Q ss_pred             EEEeCCCHhHHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhC-CeEEEEe
Q 027949           93 LVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADMDES-----------KRAVPTSKGQALADEYG-IKFFETS  159 (216)
Q Consensus        93 ~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~S  159 (216)
                      ++|++.++.+++.+.. |+.++...++ +.|+++||+|.||.++           ...+..+++..++++.| ..|++||
T Consensus        82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp-~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS  160 (198)
T KOG0393|consen   82 LCFSVVSPESFENVKSKWIPEIKHHCP-NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS  160 (198)
T ss_pred             EEEEcCChhhHHHHHhhhhHHHHhhCC-CCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence            9999999999999765 9999998885 7999999999999742           23567788999999999 6999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHhh
Q 027949          160 AKTNLNVEEVFFSIARDIKQRLA  182 (216)
Q Consensus       160 a~~~~gi~~l~~~l~~~i~~~~~  182 (216)
                      |++..|+.++|+..+.+.+....
T Consensus       161 a~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  161 ALTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             hhhhCCcHHHHHHHHHHHhcccc
Confidence            99999999999999999887643

>cd04151 Arl1 Arl1 subfamily

Probab=99.95  E-value=7.4e-27  Score=168.92  Aligned_cols=151  Identities=24%  Similarity=0.394  Sum_probs=113.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (216)
                      ||+|+|.+|+|||||++++....+.. +.++.+.+.  ..+.+.+  +.+.+||+||...+..++..++..+|++|+|+|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNV--ETVTYKN--LKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCe--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            68999999999999999998777653 345444333  3344444  789999999999999999999999999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEecCCCCCHHHHH
Q 027949           97 VTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVEEVF  170 (216)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~  170 (216)
                      ++++.++.....++..+.. ....+.|+++|+||+|+.+..   ...+......     ..+++++++||++|.|++++|
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  152 (158)
T cd04151          76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL---SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGM  152 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC---CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHH
Confidence            9999888776665554433 222468999999999985422   2222221111     122579999999999999999


Q ss_pred             HHHHH
Q 027949          171 FSIAR  175 (216)
Q Consensus       171 ~~l~~  175 (216)
                      ++|.+
T Consensus       153 ~~l~~  157 (158)
T cd04151         153 DWLVN  157 (158)
T ss_pred             HHHhc
Confidence            99975

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.95  E-value=2.8e-26  Score=167.25  Aligned_cols=152  Identities=22%  Similarity=0.397  Sum_probs=116.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC------CCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSF------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      +|+|+|++|+|||||++++.+...      ...+.++.+  .....+.+++  ..+.+||+||+..+..++..+++.+|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVG--LNIGTIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccc--cceEEEEECC--EEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            589999999999999999986432      122333433  3334555665  789999999999999888999999999


Q ss_pred             EEEEEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH-------hCCeEEEEecCC
Q 027949           91 ILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADE-------YGIKFFETSAKT  162 (216)
Q Consensus        91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~  162 (216)
                      +++|+|+++++++.....|+..+.... ..+.|+++|+||+|+.+.   ....+...+...       .+++++++||++
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  153 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA---LSVEEIKEVFQDKAEEIGRRDCLVLPVSALE  153 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC---CCHHHHHHHhccccccccCCceEEEEeeCCC
Confidence            999999999988888888877765532 247999999999998542   233344444322       246899999999


Q ss_pred             CCCHHHHHHHHHH
Q 027949          163 NLNVEEVFFSIAR  175 (216)
Q Consensus       163 ~~gi~~l~~~l~~  175 (216)
                      |+|++++++||.+
T Consensus       154 g~gv~e~~~~l~~  166 (167)
T cd04160         154 GTGVREGIEWLVE  166 (167)
T ss_pred             CcCHHHHHHHHhc
Confidence            9999999999975

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.94  E-value=3.5e-26  Score=165.28  Aligned_cols=151  Identities=23%  Similarity=0.413  Sum_probs=118.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (216)
                      ||+|+|.+|||||||++++++.... .+.++.+.  ....+.+++  +.+.+||+||+..+...+..+++.+|++++|||
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVV-TTIPTIGF--NVETVEYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCcCc--ceEEEEECC--EEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            6899999999999999999988743 34455443  334455555  789999999999998899999999999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEecCCCCCHHHHH
Q 027949           97 VTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVEEVF  170 (216)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~  170 (216)
                      +++++++..+..|+..+.... ..+.|+++|+||+|+....   ..++......     ...++++++||++|.|++++|
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  152 (158)
T cd00878          76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL---SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGL  152 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc---CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHH
Confidence            999999999888877765532 3478999999999985422   2333333322     234689999999999999999


Q ss_pred             HHHHH
Q 027949          171 FSIAR  175 (216)
Q Consensus       171 ~~l~~  175 (216)
                      ++|..
T Consensus       153 ~~l~~  157 (158)
T cd00878         153 DWLLQ  157 (158)
T ss_pred             HHHhh
Confidence            99875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.94  E-value=3e-26  Score=169.78  Aligned_cols=155  Identities=19%  Similarity=0.267  Sum_probs=120.2

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..++|+++|.+|||||||++++.+..+.. +.++.+  .....+..++  +.+.+||+||...+...+..+++++|++|+
T Consensus        16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~   90 (184)
T smart00178       16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQH--PTSEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIVY   90 (184)
T ss_pred             ccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccc--cceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            34899999999999999999999876643 334433  2334445555  788999999999888889999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH------------hCCeEEEEec
Q 027949           94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADE------------YGIKFFETSA  160 (216)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa  160 (216)
                      |+|+++++++.....++..+.... ..+.|+++|+||+|+..   ....+++......            ..+.+++|||
T Consensus        91 vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~---~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa  167 (184)
T smart00178       91 LVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY---AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV  167 (184)
T ss_pred             EEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC---CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence            999999999988888777665432 24789999999999853   2344444433311            1347999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 027949          161 KTNLNVEEVFFSIARD  176 (216)
Q Consensus       161 ~~~~gi~~l~~~l~~~  176 (216)
                      ++|.|++++++||.+.
T Consensus       168 ~~~~g~~~~~~wl~~~  183 (184)
T smart00178      168 VRRMGYGEGFKWLSQY  183 (184)
T ss_pred             ccCCChHHHHHHHHhh
Confidence            9999999999999765

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.94  E-value=1.8e-25  Score=163.04  Aligned_cols=155  Identities=19%  Similarity=0.182  Sum_probs=109.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccc---------ccccccc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI---------TTAYYRG   87 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~---------~~~~~~~   87 (216)
                      +|+++|.+|+|||||+++|.+..+.....+..+.+.....+.+++  +.+.+|||||.......         .......
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   79 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKY--LRWQVIDTPGLLDRPLEERNTIEMQAITALAHL   79 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCc--eEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence            789999999999999999999876533333334444444444444  78999999997421110         0011123


Q ss_pred             ccEEEEEEeCCCHhHH--HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCC
Q 027949           88 AMGILLVYDVTDESSF--NNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN  165 (216)
Q Consensus        88 ~d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  165 (216)
                      .|++|+|+|+++..++  .....|+..+.... .+.|+++|+||+|+.+.. .  ......+....+++++++||++|.|
T Consensus        80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~-~--~~~~~~~~~~~~~~~~~~Sa~~~~g  155 (168)
T cd01897          80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFE-D--LSEIEEEEELEGEEVLKISTLTEEG  155 (168)
T ss_pred             cCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchh-h--HHHHHHhhhhccCceEEEEecccCC
Confidence            6899999999987643  55556777776543 368999999999985421 1  1224455555568999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027949          166 VEEVFFSIARDI  177 (216)
Q Consensus       166 i~~l~~~l~~~i  177 (216)
                      ++++|++|.+.+
T Consensus       156 i~~l~~~l~~~~  167 (168)
T cd01897         156 VDEVKNKACELL  167 (168)
T ss_pred             HHHHHHHHHHHh
Confidence            999999999876

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01898 Obg Obg subfamily

Probab=99.94  E-value=2.5e-25  Score=162.62  Aligned_cols=157  Identities=18%  Similarity=0.187  Sum_probs=113.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccc----ccccccccc---cccc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTAYY---RGAM   89 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~~---~~~d   89 (216)
                      +|+|+|.+|||||||+++|.+........+..+.+.....+.+++. ..+.+|||||...    ...+...++   ..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            5899999999999999999976643222233334444445555542 3789999999632    222333333   3599


Q ss_pred             EEEEEEeCCCH-hHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh-CCeEEEEecCCCCC
Q 027949           90 GILLVYDVTDE-SSFNNIRNWIRNIEQHAS--DNVNKILVGNKADMDESKRAVPTSKGQALADEY-GIKFFETSAKTNLN  165 (216)
Q Consensus        90 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~g  165 (216)
                      ++++|+|++++ +++..+..|.+.+.....  .+.|+++|+||+|+.+..  ...+....+.... +.+++++||+++.|
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  158 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEE--ELFELLKELLKELWGKPVFPISALTGEG  158 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCch--hhHHHHHHHHhhCCCCCEEEEecCCCCC
Confidence            99999999999 788888888888876542  368999999999985422  2233444555553 67899999999999


Q ss_pred             HHHHHHHHHHH
Q 027949          166 VEEVFFSIARD  176 (216)
Q Consensus       166 i~~l~~~l~~~  176 (216)
                      ++++|++|.+.
T Consensus       159 i~~l~~~i~~~  169 (170)
T cd01898         159 LDELLRKLAEL  169 (170)
T ss_pred             HHHHHHHHHhh
Confidence            99999999865

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.94  E-value=1.3e-25  Score=161.80  Aligned_cols=151  Identities=23%  Similarity=0.466  Sum_probs=119.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEeC
Q 027949           18 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDV   97 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~   97 (216)
                      |+++|++|||||||++++.+..+...+.++.+....  .+...+  +.+.+||+||+..+...+..++..+|++++|+|+
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~   77 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA   77 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence            799999999999999999999888777777765543  344554  7899999999999998899999999999999999


Q ss_pred             CCHhHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHH-----HHhCCeEEEEecCCCCCHHHHHH
Q 027949           98 TDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETSAKTNLNVEEVFF  171 (216)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~  171 (216)
                      +++.++.....++..+... ...+.|+++|+||+|+.+..   .........     ....++++++|+++|.|++++++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  154 (159)
T cd04159          78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL---SVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD  154 (159)
T ss_pred             CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc---CHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence            9999888887777666442 22468999999999985421   122222111     12236899999999999999999


Q ss_pred             HHHH
Q 027949          172 SIAR  175 (216)
Q Consensus       172 ~l~~  175 (216)
                      +|.+
T Consensus       155 ~l~~  158 (159)
T cd04159         155 WLIK  158 (159)
T ss_pred             HHhh
Confidence            9975

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.93  E-value=7.6e-25  Score=175.00  Aligned_cols=164  Identities=16%  Similarity=0.155  Sum_probs=123.9

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEE-CCeEEEEEEEeCCCcccc----cccccc---cc
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERF----RTITTA---YY   85 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~----~~~~~~---~~   85 (216)
                      ....|+|+|.||||||||+++|++........+.++.......+.+ ++  ..+.+||+||..+-    ..+...   .+
T Consensus       157 ~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~--~~~~i~D~PGli~ga~~~~gLg~~flrhi  234 (335)
T PRK12299        157 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDY--KSFVIADIPGLIEGASEGAGLGHRFLKHI  234 (335)
T ss_pred             ccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCC--cEEEEEeCCCccCCCCccccHHHHHHHHh
Confidence            3467899999999999999999987654444455667777777777 34  56899999996431    123333   34


Q ss_pred             ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCC
Q 027949           86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS--DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN  163 (216)
Q Consensus        86 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (216)
                      ..++++|+|+|+++.++++.+..|..++..+..  .+.|+++|+||+|+.+.. .........+....+++++++||+++
T Consensus       235 e~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~-~~~~~~~~~~~~~~~~~i~~iSAktg  313 (335)
T PRK12299        235 ERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEE-EEREKRAALELAALGGPVFLISAVTG  313 (335)
T ss_pred             hhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCch-hHHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            568999999999988788888889888877643  368999999999986422 22233344445556689999999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q 027949          164 LNVEEVFFSIARDIKQR  180 (216)
Q Consensus       164 ~gi~~l~~~l~~~i~~~  180 (216)
                      +|+++++++|.+.+.+.
T Consensus       314 ~GI~eL~~~L~~~l~~~  330 (335)
T PRK12299        314 EGLDELLRALWELLEEA  330 (335)
T ss_pred             CCHHHHHHHHHHHHHhh
Confidence            99999999999887653

>PLN00023 GTP-binding protein; Provisional

Probab=99.93  E-value=1.3e-24  Score=170.20  Aligned_cols=143  Identities=24%  Similarity=0.485  Sum_probs=122.0

Q ss_pred             CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECC-------------eEEEEEEEeCCCccc
Q 027949           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG-------------KRIKLQIWDTAGQER   76 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~i~D~~G~~~   76 (216)
                      ......+||+|+|..|||||||+++|.+..+...+.++.+.+.....+.+++             ..+.+.|||++|++.
T Consensus        16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr   95 (334)
T PLN00023         16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER   95 (334)
T ss_pred             CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence            4556679999999999999999999999998888888888777767676642             458899999999999


Q ss_pred             cccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcC------------CCCcEEEEEeCCCCCCCC--Cc---c
Q 027949           77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS------------DNVNKILVGNKADMDESK--RA---V  139 (216)
Q Consensus        77 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~------------~~~p~ivv~nK~Dl~~~~--~~---~  139 (216)
                      |..++..++++++++|+|||+++..++..+..|+..+.....            ...|++||+||+||.+..  +.   .
T Consensus        96 frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~  175 (334)
T PLN00023         96 YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGN  175 (334)
T ss_pred             hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccc
Confidence            999999999999999999999999999999999999977531            258999999999996432  12   3


Q ss_pred             ChHHHHHHHHHhC
Q 027949          140 PTSKGQALADEYG  152 (216)
Q Consensus       140 ~~~~~~~~~~~~~  152 (216)
                      ..++++.++..++
T Consensus       176 ~~e~a~~~A~~~g  188 (334)
T PLN00023        176 LVDAARQWVEKQG  188 (334)
T ss_pred             cHHHHHHHHHHcC
Confidence            5788999999887

>cd04155 Arl3 Arl3 subfamily

Probab=99.93  E-value=6.3e-25  Score=161.00  Aligned_cols=155  Identities=21%  Similarity=0.366  Sum_probs=115.8

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ...++|+|+|++|||||||++++.+..+. ...++.+  .....+..++  ..+.+||++|...+...+..+++.+|+++
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g--~~~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii   86 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQG--FNIKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLI   86 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCC--cceEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence            34699999999999999999999987654 2344444  3334555666  67899999999888888888899999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh-----CCeEEEEecCCCCCH
Q 027949           93 LVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKRAVPTSKGQALADEY-----GIKFFETSAKTNLNV  166 (216)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~gi  166 (216)
                      +|+|+++..++.....++..+... ...+.|+++++||+|+.+..   ..+.+.......     .+.++++||++|+|+
T Consensus        87 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi  163 (173)
T cd04155          87 YVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA---PAEEIAEALNLHDLRDRTWHIQACSAKTGEGL  163 (173)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC---CHHHHHHHcCCcccCCCeEEEEEeECCCCCCH
Confidence            999999998888877766555432 22468999999999985421   122222221111     135789999999999


Q ss_pred             HHHHHHHHH
Q 027949          167 EEVFFSIAR  175 (216)
Q Consensus       167 ~~l~~~l~~  175 (216)
                      +++|+||.+
T Consensus       164 ~~~~~~l~~  172 (173)
T cd04155         164 QEGMNWVCK  172 (173)
T ss_pred             HHHHHHHhc
Confidence            999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=4.6e-25  Score=156.84  Aligned_cols=161  Identities=21%  Similarity=0.417  Sum_probs=131.3

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      ....++|+++|..+|||||++.+|...++... .||.+  ..+..+++.+  +.+.+||.+|++.++.+|..|+++.+++
T Consensus        14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiG--fnVE~v~ykn--~~f~vWDvGGq~k~R~lW~~Y~~~t~~l   88 (181)
T KOG0070|consen   14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIG--FNVETVEYKN--ISFTVWDVGGQEKLRPLWKHYFQNTQGL   88 (181)
T ss_pred             CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccc--cceeEEEEcc--eEEEEEecCCCcccccchhhhccCCcEE
Confidence            44569999999999999999999988886654 77777  5555666666  8999999999999999999999999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEecCCCCC
Q 027949           92 LLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLN  165 (216)
Q Consensus        92 i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~g  165 (216)
                      |||+|.+|.+.+..++..+..+..... .+.|+++++||.|++++-   +..++.....     ...+.+..|+|.+|+|
T Consensus        89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~al---s~~ei~~~L~l~~l~~~~w~iq~~~a~~G~G  165 (181)
T KOG0070|consen   89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGAL---SAAEITNKLGLHSLRSRNWHIQSTCAISGEG  165 (181)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccC---CHHHHHhHhhhhccCCCCcEEeecccccccc
Confidence            999999999999998887766655443 579999999999997643   3333333322     2347899999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 027949          166 VEEVFFSIARDIKQR  180 (216)
Q Consensus       166 i~~l~~~l~~~i~~~  180 (216)
                      +.+.++||.+.+..+
T Consensus       166 L~egl~wl~~~~~~~  180 (181)
T KOG0070|consen  166 LYEGLDWLSNNLKKR  180 (181)
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999887653

>cd01878 HflX HflX subfamily

Probab=99.93  E-value=6.6e-25  Score=165.21  Aligned_cols=157  Identities=21%  Similarity=0.204  Sum_probs=114.3

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccc---------ccccccc
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---------FRTITTA   83 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~   83 (216)
                      +..++|+|+|.+|||||||++++++..+.....+..+.+.....+.+.+. ..+.+|||||...         +... ..
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~-~~  116 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRST-LE  116 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHH-HH
Confidence            55689999999999999999999998754333334444455555555543 3789999999732         1111 12


Q ss_pred             ccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCC
Q 027949           84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN  163 (216)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (216)
                      .+..+|++++|+|++++.++.....|...+......+.|+++|+||+|+.+....      .......+.+++++||+++
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~------~~~~~~~~~~~~~~Sa~~~  190 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL------EERLEAGRPDAVFISAKTG  190 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH------HHHhhcCCCceEEEEcCCC
Confidence            3568999999999999888877767776666554456899999999998542211      1334445578999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 027949          164 LNVEEVFFSIARDI  177 (216)
Q Consensus       164 ~gi~~l~~~l~~~i  177 (216)
                      .|+++++++|.+++
T Consensus       191 ~gi~~l~~~L~~~~  204 (204)
T cd01878         191 EGLDELLEAIEELL  204 (204)
T ss_pred             CCHHHHHHHHHhhC
Confidence            99999999998753

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.93  E-value=3.6e-24  Score=153.82  Aligned_cols=157  Identities=35%  Similarity=0.508  Sum_probs=125.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+++|.+|+|||||++++....+...+.++.+.+.....+..++..+.+.+||+||+..+..++..++++++.+++++
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~   81 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVF   81 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEE
Confidence            79999999999999999999999877777788887777777778877788999999999888888888888999999999


Q ss_pred             eCCCH-hHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q 027949           96 DVTDE-SSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI  173 (216)
Q Consensus        96 d~~~~-~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  173 (216)
                      |.... .++.... .|...+......+.|+++++||.|+....  ........+......+++++||.+|.|+++++++|
T Consensus        82 d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l  159 (161)
T TIGR00231        82 DIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK--LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV  159 (161)
T ss_pred             EEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch--hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence            98776 5665554 56665655544478999999999985422  23333333344445689999999999999999987


Q ss_pred             H
Q 027949          174 A  174 (216)
Q Consensus       174 ~  174 (216)
                      .
T Consensus       160 ~  160 (161)
T TIGR00231       160 E  160 (161)
T ss_pred             h
Confidence            4

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01890 LepA LepA subfamily

Probab=99.93  E-value=1.5e-24  Score=159.87  Aligned_cols=154  Identities=27%  Similarity=0.381  Sum_probs=111.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC-------CCCccccc------eeeeEEEE--EEEE---CCeEEEEEEEeCCCccccc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS-------FTTSFITT------IGIDFKIR--TIEL---DGKRIKLQIWDTAGQERFR   78 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~-------~~~~~~~~------~~~~~~~~--~~~~---~~~~~~~~i~D~~G~~~~~   78 (216)
                      +|+++|.+++|||||+++|++..       +...+.++      .+......  .+.+   ++..+.+.+|||||++.+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            58999999999999999998742       11111111      11122222  2223   5566889999999999998


Q ss_pred             cccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC---eE
Q 027949           79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI---KF  155 (216)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~  155 (216)
                      ..+..+++.+|++|+|+|+++..+......|....    ..+.|+++|+||+|+.+..   .......++..+++   .+
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~  154 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD---PERVKQQIEDVLGLDPSEA  154 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC---HHHHHHHHHHHhCCCcccE
Confidence            88888999999999999999876665555554322    1368999999999985421   22233455555665   48


Q ss_pred             EEEecCCCCCHHHHHHHHHHHH
Q 027949          156 FETSAKTNLNVEEVFFSIARDI  177 (216)
Q Consensus       156 ~~~Sa~~~~gi~~l~~~l~~~i  177 (216)
                      +++||++|.|++++|++|.+.+
T Consensus       155 ~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         155 ILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             EEeeccCCCCHHHHHHHHHhhC
Confidence            9999999999999999998764

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.93  E-value=2.2e-26  Score=161.92  Aligned_cols=173  Identities=34%  Similarity=0.632  Sum_probs=159.6

Q ss_pred             CCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027949            9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   88 (216)
Q Consensus         9 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   88 (216)
                      +...+..+|++|+|..++||||+|++++.+-|...+..+.+.++....+.++++.+.+.+||++|+++|+.+...+++.+
T Consensus        14 e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrga   93 (246)
T KOG4252|consen   14 ETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGA   93 (246)
T ss_pred             chhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccc
Confidence            34567789999999999999999999999999999999999999999988888888899999999999999999999999


Q ss_pred             cEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHH
Q 027949           89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE  168 (216)
Q Consensus        89 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (216)
                      .+.++||+-+|..+|+....|+..+..... .+|.++|-||+||.+ .......+++.+++.+...++-+|++...++..
T Consensus        94 qa~vLVFSTTDr~SFea~~~w~~kv~~e~~-~IPtV~vqNKIDlve-ds~~~~~evE~lak~l~~RlyRtSvked~NV~~  171 (246)
T KOG4252|consen   94 QASVLVFSTTDRYSFEATLEWYNKVQKETE-RIPTVFVQNKIDLVE-DSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMH  171 (246)
T ss_pred             cceEEEEecccHHHHHHHHHHHHHHHHHhc-cCCeEEeeccchhhH-hhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHH
Confidence            999999999999999999999999987765 699999999999976 456778889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhc
Q 027949          169 VFFSIARDIKQRLAD  183 (216)
Q Consensus       169 l~~~l~~~i~~~~~~  183 (216)
                      +|.+|++.+.++..+
T Consensus       172 vF~YLaeK~~q~~kq  186 (246)
T KOG4252|consen  172 VFAYLAEKLTQQKKQ  186 (246)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999987766

>cd04171 SelB SelB subfamily

Probab=99.92  E-value=3.5e-24  Score=155.42  Aligned_cols=153  Identities=20%  Similarity=0.193  Sum_probs=105.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCC---CCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGS---FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      +.|+|+|.+|+|||||+++|.+..   +.....++.+.+.....+.+.+ ...+.+|||||++.+......+++.+|+++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii   79 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL   79 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence            368999999999999999999743   2223334444455555555552 268999999999888766667788999999


Q ss_pred             EEEeCCC---HhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-ccChHHHHHHHHH---hCCeEEEEecCCCCC
Q 027949           93 LVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR-AVPTSKGQALADE---YGIKFFETSAKTNLN  165 (216)
Q Consensus        93 ~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~---~~~~~~~~Sa~~~~g  165 (216)
                      +|+|+++   +++...+    ..+...  ...|+++|+||+|+.+... ....++..++...   .+.+++++||++|+|
T Consensus        80 ~V~d~~~~~~~~~~~~~----~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  153 (164)
T cd04171          80 LVVAADEGIMPQTREHL----EILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG  153 (164)
T ss_pred             EEEECCCCccHhHHHHH----HHHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence            9999987   3333222    222222  1248999999999864211 1112333444443   357999999999999


Q ss_pred             HHHHHHHHHH
Q 027949          166 VEEVFFSIAR  175 (216)
Q Consensus       166 i~~l~~~l~~  175 (216)
                      +++++++|.+
T Consensus       154 v~~l~~~l~~  163 (164)
T cd04171         154 IEELKEYLDE  163 (164)
T ss_pred             HHHHHHHHhh
Confidence            9999998754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.92  E-value=2.1e-25  Score=152.03  Aligned_cols=159  Identities=23%  Similarity=0.428  Sum_probs=127.9

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+.+.++|..++|||||++.+..+.+.....|+.+  +....++..+  +++.+||.||+..|+.+|+.|.+.+++++||
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvG--fnmrk~tkgn--vtiklwD~gGq~rfrsmWerycR~v~aivY~   95 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVG--FNMRKVTKGN--VTIKLWDLGGQPRFRSMWERYCRGVSAIVYV   95 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccchhhhccccc--ceeEEeccCc--eEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence            47899999999999999999998888777778777  4445555555  8999999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHH-----HHhCCeEEEEecCCCCCHHH
Q 027949           95 YDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETSAKTNLNVEE  168 (216)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~  168 (216)
                      +|+.+++.+...+..+..+..... .++|++|++||.|++++-   ....+..-.     ....+..|.+|+++..+|+.
T Consensus        96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL---~~~~li~rmgL~sitdREvcC~siScke~~Nid~  172 (186)
T KOG0075|consen   96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL---SKIALIERMGLSSITDREVCCFSISCKEKVNIDI  172 (186)
T ss_pred             eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccc---cHHHHHHHhCccccccceEEEEEEEEcCCccHHH
Confidence            999999998888887766655433 579999999999986643   222222111     12226889999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027949          169 VFFSIARDIKQR  180 (216)
Q Consensus       169 l~~~l~~~i~~~  180 (216)
                      +..||+++-...
T Consensus       173 ~~~Wli~hsk~~  184 (186)
T KOG0075|consen  173 TLDWLIEHSKSL  184 (186)
T ss_pred             HHHHHHHHhhhh
Confidence            999999886543

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.92  E-value=1e-24  Score=155.00  Aligned_cols=148  Identities=20%  Similarity=0.254  Sum_probs=109.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc------cccccc--cc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------ITTAYY--RG   87 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--~~   87 (216)
                      ++|+++|.||+|||||+|+|++......+.|+.+.+.....+.+.+  ..+.++|+||......      ....++  ..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            5899999999999999999999997777789999999889999988  6788999999533221      223333  57


Q ss_pred             ccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHH
Q 027949           88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE  167 (216)
Q Consensus        88 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  167 (216)
                      .|++|+|+|+++.+.-.   .+...+.+.   +.|+++|+||+|....  .-..-+...+.+.++++++++||++++|++
T Consensus        79 ~D~ii~VvDa~~l~r~l---~l~~ql~e~---g~P~vvvlN~~D~a~~--~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~  150 (156)
T PF02421_consen   79 PDLIIVVVDATNLERNL---YLTLQLLEL---GIPVVVVLNKMDEAER--KGIEIDAEKLSERLGVPVIPVSARTGEGID  150 (156)
T ss_dssp             SSEEEEEEEGGGHHHHH---HHHHHHHHT---TSSEEEEEETHHHHHH--TTEEE-HHHHHHHHTS-EEEEBTTTTBTHH
T ss_pred             CCEEEEECCCCCHHHHH---HHHHHHHHc---CCCEEEEEeCHHHHHH--cCCEECHHHHHHHhCCCEEEEEeCCCcCHH
Confidence            89999999998754322   223333333   7999999999997432  222234667788889999999999999999


Q ss_pred             HHHHHH
Q 027949          168 EVFFSI  173 (216)
Q Consensus       168 ~l~~~l  173 (216)
                      ++++.|
T Consensus       151 ~L~~~I  156 (156)
T PF02421_consen  151 ELKDAI  156 (156)
T ss_dssp             HHHHHH
T ss_pred             HHHhhC
Confidence            998875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.92  E-value=8.3e-24  Score=154.18  Aligned_cols=158  Identities=19%  Similarity=0.142  Sum_probs=110.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEEC-CeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      .|+|+|.+|+|||||+++|....+.....++.+.+.....+..+ +....+.+|||||+..+..++..+++.+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            48999999999999999999888765544444544444444443 13478899999999888888888889999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHH------HhCCeEEEEecCCCCCHHHH
Q 027949           96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALAD------EYGIKFFETSAKTNLNVEEV  169 (216)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~l  169 (216)
                      |+++....... ..+..+..   .+.|+++|+||+|+..............+..      ...++++++|+++|.|++++
T Consensus        82 d~~~~~~~~~~-~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  157 (168)
T cd01887          82 AADDGVMPQTI-EAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL  157 (168)
T ss_pred             ECCCCccHHHH-HHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence            99875322211 11222222   3689999999999864221111111211111      11368999999999999999


Q ss_pred             HHHHHHHHH
Q 027949          170 FFSIARDIK  178 (216)
Q Consensus       170 ~~~l~~~i~  178 (216)
                      +++|.+...
T Consensus       158 ~~~l~~~~~  166 (168)
T cd01887         158 LEAILLLAE  166 (168)
T ss_pred             HHHHHHhhh
Confidence            999987653

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.92  E-value=7e-23  Score=155.72  Aligned_cols=169  Identities=39%  Similarity=0.576  Sum_probs=136.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+|+|+.|||||||+++|....+...+.++.+.......+...+..+.+.+|||+|+++++.++..++..++++++++
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~   85 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVY   85 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEE
Confidence            89999999999999999999999999888888887777777767665789999999999999999999999999999999


Q ss_pred             eCCCH-hHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-----------ccChHHHHHHHHHh---CCeEEEEec
Q 027949           96 DVTDE-SSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR-----------AVPTSKGQALADEY---GIKFFETSA  160 (216)
Q Consensus        96 d~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-----------~~~~~~~~~~~~~~---~~~~~~~Sa  160 (216)
                      |..+. .++.....|...+........|+++|+||+|+.....           ..............   ...++++|+
T Consensus        86 d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  165 (219)
T COG1100          86 DSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSA  165 (219)
T ss_pred             ecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeec
Confidence            99994 4555566788888887766799999999999965421           11222222222222   234899999


Q ss_pred             C--CCCCHHHHHHHHHHHHHHHhhcc
Q 027949          161 K--TNLNVEEVFFSIARDIKQRLADT  184 (216)
Q Consensus       161 ~--~~~gi~~l~~~l~~~i~~~~~~~  184 (216)
                      +  ++.+++++|..+...+.+.....
T Consensus       166 ~~~~~~~v~~~~~~~~~~~~~~~~~~  191 (219)
T COG1100         166 KSLTGPNVNELFKELLRKLLEEIEKL  191 (219)
T ss_pred             ccCCCcCHHHHHHHHHHHHHHhhhhh
Confidence            9  99999999999999997654443

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.91  E-value=1.9e-23  Score=150.70  Aligned_cols=148  Identities=18%  Similarity=0.212  Sum_probs=111.4

Q ss_pred             EEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccc------ccccc--ccccEE
Q 027949           20 LIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI------TTAYY--RGAMGI   91 (216)
Q Consensus        20 v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~~   91 (216)
                      |+|.+|+|||||++++.+........++.+.+.....+.+++  ..+.+|||||...+...      ...++  ..+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999998875555556666666667777776  57899999998765542      34455  489999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q 027949           92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFF  171 (216)
Q Consensus        92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  171 (216)
                      |+|+|+.+++...   .++..+..   .+.|+++|+||+|+.+.. .. ......+...++++++++||.+|.|++++++
T Consensus        79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~-~~-~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~  150 (158)
T cd01879          79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKR-GI-KIDLDKLSELLGVPVVPTSARKGEGIDELKD  150 (158)
T ss_pred             EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccc-cc-hhhHHHHHHhhCCCeEEEEccCCCCHHHHHH
Confidence            9999998865432   23333332   268999999999986432 12 2234566777789999999999999999999


Q ss_pred             HHHHHH
Q 027949          172 SIARDI  177 (216)
Q Consensus       172 ~l~~~i  177 (216)
                      +|.+..
T Consensus       151 ~l~~~~  156 (158)
T cd01879         151 AIAELA  156 (158)
T ss_pred             HHHHHh
Confidence            998763

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.91  E-value=3.8e-23  Score=147.18  Aligned_cols=155  Identities=53%  Similarity=0.877  Sum_probs=120.1

Q ss_pred             EEcCCCCcHHHHHHHHHcCCC-CCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEeCC
Q 027949           20 LIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT   98 (216)
Q Consensus        20 v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~   98 (216)
                      |+|++|+|||||++++.+... .....++. .+.....+........+.+||+||...+...+..+++.+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999998876 44444444 6666667776667789999999999888777788889999999999999


Q ss_pred             CHhHHHHHHHH-HHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q 027949           99 DESSFNNIRNW-IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR  175 (216)
Q Consensus        99 ~~~~~~~~~~~-~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  175 (216)
                      ++.++.....| ...+......+.|+++|+||+|+.+............+.....++++++|+.++.|+.+++++|.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  157 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELAE  157 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHhC
Confidence            99998888876 223333444579999999999986432221111134445555689999999999999999999863

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.91  E-value=3e-23  Score=167.05  Aligned_cols=155  Identities=23%  Similarity=0.223  Sum_probs=114.1

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcc---------cccccccc
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE---------RFRTITTA   83 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~   83 (216)
                      +..++|+++|.+|+|||||+|+|++..+.....++.+.+.....+.+.+. ..+.+|||+|..         .+... ..
T Consensus       187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~t-le  264 (351)
T TIGR03156       187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRAT-LE  264 (351)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHH-HH
Confidence            34489999999999999999999998765444455566777777777432 578999999972         12221 22


Q ss_pred             ccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCC
Q 027949           84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN  163 (216)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (216)
                      .+.++|++++|+|++++.+......|...+......+.|+++|+||+|+.+..      ..... .....+++++||++|
T Consensus       265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~------~v~~~-~~~~~~~i~iSAktg  337 (351)
T TIGR03156       265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEP------RIERL-EEGYPEAVFVSAKTG  337 (351)
T ss_pred             HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChH------hHHHH-HhCCCCEEEEEccCC
Confidence            46789999999999999887777666665555444468999999999985421      11111 112246899999999


Q ss_pred             CCHHHHHHHHHHH
Q 027949          164 LNVEEVFFSIARD  176 (216)
Q Consensus       164 ~gi~~l~~~l~~~  176 (216)
                      .|+++++++|.+.
T Consensus       338 ~GI~eL~~~I~~~  350 (351)
T TIGR03156       338 EGLDLLLEAIAER  350 (351)
T ss_pred             CCHHHHHHHHHhh
Confidence            9999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.91  E-value=3.3e-23  Score=165.45  Aligned_cols=161  Identities=17%  Similarity=0.188  Sum_probs=119.6

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccc----cccccccc---c
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF----RTITTAYY---R   86 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~~~~---~   86 (216)
                      ....|+|+|.+|||||||+++|.+........+.++.......+.+++ ...+.+||+||..+.    ..+...|+   .
T Consensus       156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhie  234 (329)
T TIGR02729       156 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIE  234 (329)
T ss_pred             ccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHH
Confidence            446899999999999999999998765433334455666666776654 257899999997432    22333444   4


Q ss_pred             cccEEEEEEeCCCH---hHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecC
Q 027949           87 GAMGILLVYDVTDE---SSFNNIRNWIRNIEQHAS--DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK  161 (216)
Q Consensus        87 ~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (216)
                      .++++++|+|+++.   +.+..+..|..++..+..  ...|++||+||+|+.+.  ....+....+....+.+++++||+
T Consensus       235 rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~--~~~~~~~~~l~~~~~~~vi~iSAk  312 (329)
T TIGR02729       235 RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE--EELAELLKELKKALGKPVFPISAL  312 (329)
T ss_pred             hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh--HHHHHHHHHHHHHcCCcEEEEEcc
Confidence            69999999999976   677777777777765532  36899999999998653  222344555666667899999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 027949          162 TNLNVEEVFFSIARDI  177 (216)
Q Consensus       162 ~~~gi~~l~~~l~~~i  177 (216)
                      +++|+++++.+|.+.+
T Consensus       313 tg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       313 TGEGLDELLYALAELL  328 (329)
T ss_pred             CCcCHHHHHHHHHHHh
Confidence            9999999999998754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.91  E-value=8.6e-24  Score=150.15  Aligned_cols=134  Identities=22%  Similarity=0.266  Sum_probs=98.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcc-----ccccccccccccccEE
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE-----RFRTITTAYYRGAMGI   91 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~d~~   91 (216)
                      ||+++|.+|+|||||+++|.+..+.  +.++.+       +.+..     .+|||||..     .+..+. ..++++|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~-------~~~~~-----~~iDt~G~~~~~~~~~~~~~-~~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQA-------VEYND-----GAIDTPGEYVENRRLYSALI-VTAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--ccccee-------EEEcC-----eeecCchhhhhhHHHHHHHH-HHhhcCCEE
Confidence            7999999999999999999987652  222221       22222     579999972     233332 247899999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEecCCCCCHHHHH
Q 027949           92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVEEVF  170 (216)
Q Consensus        92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~  170 (216)
                      |+|||++++.++.. ..|...+      ..|+++|+||+|+.+  .....+....++...+. +++++||++|.|++++|
T Consensus        67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  137 (142)
T TIGR02528        67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE--ADVDIERAKELLETAGAEPIFEISSVDEQGLEALV  137 (142)
T ss_pred             EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC--cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHH
Confidence            99999999987654 2343221      249999999999854  23345666777777775 89999999999999999


Q ss_pred             HHHH
Q 027949          171 FSIA  174 (216)
Q Consensus       171 ~~l~  174 (216)
                      ++|.
T Consensus       138 ~~l~  141 (142)
T TIGR02528       138 DYLN  141 (142)
T ss_pred             HHHh
Confidence            9874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.91  E-value=1.6e-23  Score=156.47  Aligned_cols=161  Identities=19%  Similarity=0.212  Sum_probs=107.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc--CCCCCcc------------ccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD--GSFTTSF------------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT   81 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~   81 (216)
                      -+|+++|.+++|||||+++|+.  ..+...+            ..+.+.+.......++...+.+.+|||||++.|...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            3799999999999999999997  3333221            1112222333333333334789999999999999889


Q ss_pred             ccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-------HhCCe
Q 027949           82 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALAD-------EYGIK  154 (216)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~  154 (216)
                      ..+++.+|++++|+|+++.. +.....++..+..   .+.|+++|+||+|+.+.......+++..+..       ..+++
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP  158 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence            99999999999999998742 2222333333332   3689999999999864322222344444442       23678


Q ss_pred             EEEEecCCCCCHHHH------HHHHHHHHHHH
Q 027949          155 FFETSAKTNLNVEEV------FFSIARDIKQR  180 (216)
Q Consensus       155 ~~~~Sa~~~~gi~~l------~~~l~~~i~~~  180 (216)
                      ++++||++|.|++++      .++|++.+.++
T Consensus       159 iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~  190 (194)
T cd01891         159 VLYASAKNGWASLNLEDPSEDLEPLFDTIIEH  190 (194)
T ss_pred             EEEeehhccccccccccchhhHHHHHHHHHhc
Confidence            999999999887554      44555555543

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PRK04213 GTP-binding protein; Provisional

Probab=99.90  E-value=6.6e-24  Score=159.37  Aligned_cols=152  Identities=18%  Similarity=0.213  Sum_probs=103.2

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCC-----------ccccccccc
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG-----------QERFRTITT   82 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~   82 (216)
                      ..++|+++|.+|+|||||+++|.+..+.....++.+..  ...+.+.    .+.+|||||           .+.++..+.
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~--~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   81 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK--PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV   81 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC--ceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence            45899999999999999999999987665555555433  3333333    588999999           344555444


Q ss_pred             cccc----cccEEEEEEeCCCHhHHH----------HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHH
Q 027949           83 AYYR----GAMGILLVYDVTDESSFN----------NIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALA  148 (216)
Q Consensus        83 ~~~~----~~d~~i~v~d~~~~~~~~----------~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~  148 (216)
                      .++.    .++++++|+|.+....+.          ....++..+..   .+.|+++|+||+|+.+..    .+....+.
T Consensus        82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~----~~~~~~~~  154 (201)
T PRK04213         82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNR----DEVLDEIA  154 (201)
T ss_pred             HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcH----HHHHHHHH
Confidence            4443    457888899886532110          01112222222   368999999999985422    23445555


Q ss_pred             HHhCC---------eEEEEecCCCCCHHHHHHHHHHHHHH
Q 027949          149 DEYGI---------KFFETSAKTNLNVEEVFFSIARDIKQ  179 (216)
Q Consensus       149 ~~~~~---------~~~~~Sa~~~~gi~~l~~~l~~~i~~  179 (216)
                      ..++.         +++++||++| |+++++++|.+.+.+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~  193 (201)
T PRK04213        155 ERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE  193 (201)
T ss_pred             HHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence            55554         5899999999 999999999987654

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.90  E-value=2.5e-22  Score=164.43  Aligned_cols=160  Identities=20%  Similarity=0.257  Sum_probs=120.1

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEEC-CeEEEEEEEeCCCccc----ccccccccc---c
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQER----FRTITTAYY---R   86 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~----~~~~~~~~~---~   86 (216)
                      ...|+|+|.||||||||+++|++........+.++.......+.++ +  ..+.+||+||..+    ...+...|+   .
T Consensus       158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~--~~~~laD~PGliega~~~~gLg~~fLrhie  235 (424)
T PRK12297        158 LADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDG--RSFVMADIPGLIEGASEGVGLGHQFLRHIE  235 (424)
T ss_pred             cCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCC--ceEEEEECCCCcccccccchHHHHHHHHHh
Confidence            3489999999999999999999877543344555666666666665 4  5789999999642    222334444   4


Q ss_pred             cccEEEEEEeCCCH---hHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecC
Q 027949           87 GAMGILLVYDVTDE---SSFNNIRNWIRNIEQHAS--DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK  161 (216)
Q Consensus        87 ~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (216)
                      .++++|+|+|+++.   +.+.....|...+..+..  .+.|++||+||+|+.+     ..+.+..+...++.+++++||+
T Consensus       236 r~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~-----~~e~l~~l~~~l~~~i~~iSA~  310 (424)
T PRK12297        236 RTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE-----AEENLEEFKEKLGPKVFPISAL  310 (424)
T ss_pred             hCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC-----CHHHHHHHHHHhCCcEEEEeCC
Confidence            58999999999865   566777777777766543  3689999999999843     1234555666666889999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHh
Q 027949          162 TNLNVEEVFFSIARDIKQRL  181 (216)
Q Consensus       162 ~~~gi~~l~~~l~~~i~~~~  181 (216)
                      +++|+++++++|.+.+.+..
T Consensus       311 tgeGI~eL~~~L~~~l~~~~  330 (424)
T PRK12297        311 TGQGLDELLYAVAELLEETP  330 (424)
T ss_pred             CCCCHHHHHHHHHHHHHhCc
Confidence            99999999999998876643

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.90  E-value=1.6e-22  Score=145.55  Aligned_cols=146  Identities=24%  Similarity=0.238  Sum_probs=107.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccc--------cccccc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTAYYR   86 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~   86 (216)
                      ++|+++|++|+|||||++++++.... ....++.+.+.....+..++  ..+.+|||||...+...        ...++.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            58999999999999999999987642 22334444455555566665  67899999997554321        234567


Q ss_pred             cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCH
Q 027949           87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV  166 (216)
Q Consensus        87 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  166 (216)
                      .+|++++|+|++++.+......+..      ..+.|+++|+||+|+.+....        .....+.+++++||.++.|+
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~--------~~~~~~~~~~~~Sa~~~~~v  145 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL--------LSLLAGKPIIAISAKTGEGL  145 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc--------ccccCCCceEEEECCCCCCH
Confidence            8999999999998776665544332      236899999999998653221        33444579999999999999


Q ss_pred             HHHHHHHHHHH
Q 027949          167 EEVFFSIARDI  177 (216)
Q Consensus       167 ~~l~~~l~~~i  177 (216)
                      ++++++|.+.+
T Consensus       146 ~~l~~~l~~~~  156 (157)
T cd04164         146 DELKEALLELA  156 (157)
T ss_pred             HHHHHHHHHhh
Confidence            99999988764

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>TIGR00436 era GTP-binding protein Era

Probab=99.90  E-value=1.7e-22  Score=158.17  Aligned_cols=154  Identities=17%  Similarity=0.062  Sum_probs=105.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCC-ccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc--------cccccccc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------ITTAYYRG   87 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~   87 (216)
                      +|+|+|.+|||||||+|+|++..+.. ...+.++..........++  ..+.+|||||......        .....+..
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~   79 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG   79 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence            68999999999999999999987542 2333333333323333333  5789999999754211        12345688


Q ss_pred             ccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEecCCCCCH
Q 027949           88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNV  166 (216)
Q Consensus        88 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi  166 (216)
                      +|++++|+|+++..+..  ..++..+..   .+.|+++|+||+|+.+  ..........+....+. +++++||++|.|+
T Consensus        80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~--~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi  152 (270)
T TIGR00436        80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKF--KDKLLPLIDKYAILEDFKDIVPISALTGDNT  152 (270)
T ss_pred             CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCC--HHHHHHHHHHHHhhcCCCceEEEecCCCCCH
Confidence            99999999999876553  233333332   2689999999999853  22222334444444444 8999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027949          167 EEVFFSIARDIKQ  179 (216)
Q Consensus       167 ~~l~~~l~~~i~~  179 (216)
                      ++++++|.+.+.+
T Consensus       153 ~~L~~~l~~~l~~  165 (270)
T TIGR00436       153 SFLAAFIEVHLPE  165 (270)
T ss_pred             HHHHHHHHHhCCC
Confidence            9999999887633

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.90  E-value=1.2e-22  Score=149.12  Aligned_cols=154  Identities=24%  Similarity=0.267  Sum_probs=107.4

Q ss_pred             EEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEEC-CeEEEEEEEeCCCccc----ccccc---ccccccccEE
Q 027949           20 LIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQER----FRTIT---TAYYRGAMGI   91 (216)
Q Consensus        20 v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~----~~~~~---~~~~~~~d~~   91 (216)
                      ++|++|||||||+++|.+........+..+.+.....+.++ +  ..+.+||+||...    ...+.   ...++.+|++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i   78 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI   78 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence            58999999999999999987532223333444545555565 5  6789999999632    12222   2346789999


Q ss_pred             EEEEeCCCH------hHHHHHHHHHHHHHHhcC-------CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEE
Q 027949           92 LLVYDVTDE------SSFNNIRNWIRNIEQHAS-------DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFET  158 (216)
Q Consensus        92 i~v~d~~~~------~~~~~~~~~~~~~~~~~~-------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (216)
                      ++|+|+.++      .++.....|...+.....       .+.|+++|+||+|+.... ..............+..++++
T Consensus        79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~  157 (176)
T cd01881          79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAE-ELEEELVRELALEEGAEVVPI  157 (176)
T ss_pred             EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchh-HHHHHHHHHHhcCCCCCEEEE
Confidence            999999988      467777777666654432       268999999999985422 111111223334445789999


Q ss_pred             ecCCCCCHHHHHHHHHHH
Q 027949          159 SAKTNLNVEEVFFSIARD  176 (216)
Q Consensus       159 Sa~~~~gi~~l~~~l~~~  176 (216)
                      ||+++.|++++++++...
T Consensus       158 Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         158 SAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             ehhhhcCHHHHHHHHHhh
Confidence            999999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.89  E-value=5.4e-22  Score=164.11  Aligned_cols=153  Identities=23%  Similarity=0.239  Sum_probs=117.7

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCC-CCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTAY   84 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~   84 (216)
                      ..++|+++|.+|+|||||+|+|++... .....++.+.+.....+.+++  ..+.+|||||...+...        ...+
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~  279 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA  279 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence            448999999999999999999998754 233446666777777888887  67799999998654332        2356


Q ss_pred             cccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCC
Q 027949           85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL  164 (216)
Q Consensus        85 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (216)
                      ++++|++++|||++++.++...  |+..+..   .+.|+++|+||+|+.+.       ....++...+.+++.+||++ .
T Consensus       280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~-------~~~~~~~~~~~~~~~vSak~-~  346 (442)
T TIGR00450       280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN-------SLEFFVSSKVLNSSNLSAKQ-L  346 (442)
T ss_pred             HhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc-------chhhhhhhcCCceEEEEEec-C
Confidence            7899999999999988776654  5554432   36899999999998542       12344556677899999998 6


Q ss_pred             CHHHHHHHHHHHHHHHh
Q 027949          165 NVEEVFFSIARDIKQRL  181 (216)
Q Consensus       165 gi~~l~~~l~~~i~~~~  181 (216)
                      |++++|+.|.+.+.+..
T Consensus       347 gI~~~~~~L~~~i~~~~  363 (442)
T TIGR00450       347 KIKALVDLLTQKINAFY  363 (442)
T ss_pred             CHHHHHHHHHHHHHHHh
Confidence            99999999999988764

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.89  E-value=2.8e-22  Score=148.70  Aligned_cols=155  Identities=21%  Similarity=0.178  Sum_probs=110.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCccc----------------cceeeeEEEEEEEECCeEEEEEEEeCCCccccccc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFI----------------TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI   80 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   80 (216)
                      +|+|+|.+|+|||||+++|++........                .+.+.......+...+  ..+.+||+||...+...
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~   78 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPD--RRVNFIDTPGHEDFSSE   78 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCC--EEEEEEeCCCcHHHHHH
Confidence            48999999999999999999877654331                1222233333344444  68899999999888888


Q ss_pred             cccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-CccChHHHHHHHHH---------
Q 027949           81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK-RAVPTSKGQALADE---------  150 (216)
Q Consensus        81 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~---------  150 (216)
                      +..+++.+|++++|+|+.++..... ..++..+..   .+.|+++|+||+|+.... .......++.....         
T Consensus        79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (189)
T cd00881          79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE  154 (189)
T ss_pred             HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence            8888899999999999987654332 233333332   378999999999986421 12222333333332         


Q ss_pred             -----hCCeEEEEecCCCCCHHHHHHHHHHHH
Q 027949          151 -----YGIKFFETSAKTNLNVEEVFFSIARDI  177 (216)
Q Consensus       151 -----~~~~~~~~Sa~~~~gi~~l~~~l~~~i  177 (216)
                           ...+++++||++|.|+++++.+|.+.+
T Consensus       155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence                 347899999999999999999998875

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.89  E-value=5.5e-22  Score=164.37  Aligned_cols=166  Identities=16%  Similarity=0.166  Sum_probs=118.2

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccc----cccc---cccc
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF----RTIT---TAYY   85 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~---~~~~   85 (216)
                      .....|+|+|.||||||||+++|++........+.++.......+.+.+  ..+.+||+||....    ..+.   ...+
T Consensus       157 k~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhi  234 (500)
T PRK12296        157 KSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHI  234 (500)
T ss_pred             cccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHH
Confidence            3457899999999999999999998765544446666777777787777  67899999996321    1111   2234


Q ss_pred             ccccEEEEEEeCCCH----hHHHHHHHHHHHHHHhc-----------CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH
Q 027949           86 RGAMGILLVYDVTDE----SSFNNIRNWIRNIEQHA-----------SDNVNKILVGNKADMDESKRAVPTSKGQALADE  150 (216)
Q Consensus        86 ~~~d~~i~v~d~~~~----~~~~~~~~~~~~~~~~~-----------~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~  150 (216)
                      ..+|++|+|+|+++.    +.+..+..+..++..+.           ....|++||+||+|+.+..  ...+........
T Consensus       235 eradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~--el~e~l~~~l~~  312 (500)
T PRK12296        235 ERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR--ELAEFVRPELEA  312 (500)
T ss_pred             HhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH--HHHHHHHHHHHH
Confidence            678999999999753    23444444444444332           1368999999999986422  122233333445


Q ss_pred             hCCeEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 027949          151 YGIKFFETSAKTNLNVEEVFFSIARDIKQRLA  182 (216)
Q Consensus       151 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  182 (216)
                      .+++++++||++++|+++++.+|.+.+...+.
T Consensus       313 ~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~  344 (500)
T PRK12296        313 RGWPVFEVSAASREGLRELSFALAELVEEARA  344 (500)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence            57899999999999999999999999877654

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=2.4e-22  Score=136.05  Aligned_cols=157  Identities=22%  Similarity=0.445  Sum_probs=127.6

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..++|+.+|..++||||++..|..... ....|+.+  +.+.++.+.+  +.+.+||.+|++..+..|+.|+....++||
T Consensus        16 KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvG--FnvetVtykN--~kfNvwdvGGqd~iRplWrhYy~gtqglIF   90 (180)
T KOG0071|consen   16 KEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVG--FNVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   90 (180)
T ss_pred             ccceEEEEecccCCceehhhHHhcCCC-cccccccc--eeEEEEEeee--eEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence            358999999999999999999987653 34556666  6667777777  899999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEecCCCCCHH
Q 027949           94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVE  167 (216)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~  167 (216)
                      |+|..+.+.++++++.+..+.... -...|++|.+||.|++.+   ..++++.++..     ...+.+.+++|.+|+|+.
T Consensus        91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A---~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~  167 (180)
T KOG0071|consen   91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDA---MKPQEIQDKLELERIRDRNWYVQPSCALSGDGLK  167 (180)
T ss_pred             EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccc---cCHHHHHHHhccccccCCccEeeccccccchhHH
Confidence            999999988888888666654432 257899999999999764   34555555543     233788999999999999


Q ss_pred             HHHHHHHHHHH
Q 027949          168 EVFFSIARDIK  178 (216)
Q Consensus       168 ~l~~~l~~~i~  178 (216)
                      +-|.||...+.
T Consensus       168 eglswlsnn~~  178 (180)
T KOG0071|consen  168 EGLSWLSNNLK  178 (180)
T ss_pred             HHHHHHHhhcc
Confidence            99999987653

>PRK15494 era GTPase Era; Provisional

Probab=99.89  E-value=7.6e-22  Score=158.68  Aligned_cols=158  Identities=21%  Similarity=0.251  Sum_probs=109.3

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCC-ccccceeeeEEEEEEEECCeEEEEEEEeCCCccc-ccccc-------cc
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRTIT-------TA   83 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~-------~~   83 (216)
                      ...++|+++|.+|||||||+|+|++..+.. ...+..+.+.....+..++  .++.+|||||... +..+.       ..
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~  127 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS  127 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence            345799999999999999999999887642 1222333344445566666  5789999999743 22211       12


Q ss_pred             ccccccEEEEEEeCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC--CeEEEEec
Q 027949           84 YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG--IKFFETSA  160 (216)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa  160 (216)
                      .+..+|++++|+|..+.  +.... .|+..+...   +.|.++|+||+|+.+.    ....+..++....  ..++++||
T Consensus       128 ~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~----~~~~~~~~l~~~~~~~~i~~iSA  198 (339)
T PRK15494        128 SLHSADLVLLIIDSLKS--FDDITHNILDKLRSL---NIVPIFLLNKIDIESK----YLNDIKAFLTENHPDSLLFPISA  198 (339)
T ss_pred             HhhhCCEEEEEEECCCC--CCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc----cHHHHHHHHHhcCCCcEEEEEec
Confidence            36789999999997653  33332 344444332   4677889999998531    2344555555443  58999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHh
Q 027949          161 KTNLNVEEVFFSIARDIKQRL  181 (216)
Q Consensus       161 ~~~~gi~~l~~~l~~~i~~~~  181 (216)
                      ++|.|+++++++|.+.+.+..
T Consensus       199 ktg~gv~eL~~~L~~~l~~~~  219 (339)
T PRK15494        199 LSGKNIDGLLEYITSKAKISP  219 (339)
T ss_pred             cCccCHHHHHHHHHHhCCCCC
Confidence            999999999999988765543

>cd01894 EngA1 EngA1 subfamily

Probab=99.89  E-value=3.2e-22  Score=144.03  Aligned_cols=147  Identities=20%  Similarity=0.165  Sum_probs=102.3

Q ss_pred             EEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc--------cccccccccc
Q 027949           19 LLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------ITTAYYRGAM   89 (216)
Q Consensus        19 ~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~d   89 (216)
                      +++|.+|+|||||+++|++.... ....+..+.+........++  ..+.+|||||...+..        .....++.+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            47999999999999999987532 12233344445555556666  6789999999876443        2345678899


Q ss_pred             EEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEecCCCCCHHH
Q 027949           90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVEE  168 (216)
Q Consensus        90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~  168 (216)
                      ++++|+|..++.+.... .+...+..   .+.|+++|+||+|+.+....      .......+. +++++|+++|.|+++
T Consensus        79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~------~~~~~~~~~~~~~~~Sa~~~~gv~~  148 (157)
T cd01894          79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE------AAEFYSLGFGEPIPISAEHGRGIGD  148 (157)
T ss_pred             EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH------HHHHHhcCCCCeEEEecccCCCHHH
Confidence            99999999875443332 12222322   25899999999998652211      222334555 889999999999999


Q ss_pred             HHHHHHHHH
Q 027949          169 VFFSIARDI  177 (216)
Q Consensus       169 l~~~l~~~i  177 (216)
                      +|++|.+.+
T Consensus       149 l~~~l~~~~  157 (157)
T cd01894         149 LLDAILELL  157 (157)
T ss_pred             HHHHHHhhC
Confidence            999998753

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.89  E-value=3.7e-22  Score=165.88  Aligned_cols=148  Identities=26%  Similarity=0.243  Sum_probs=113.4

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccc--------ccccc
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTAYY   85 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~   85 (216)
                      .++|+++|.+|+|||||+|+|++.+.. ....++.+.+.....+.+++  ..+.+|||||...+...        ...++
T Consensus       215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~  292 (449)
T PRK05291        215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREAI  292 (449)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence            389999999999999999999987642 34456666677777777877  67899999998654332        22357


Q ss_pred             ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCC
Q 027949           86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN  165 (216)
Q Consensus        86 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  165 (216)
                      +++|++++|+|++++.++.....|..      ..+.|+++|+||+|+.+... ..        ...+.+++++||++|.|
T Consensus       293 ~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~-~~--------~~~~~~~i~iSAktg~G  357 (449)
T PRK05291        293 EEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEID-LE--------EENGKPVIRISAKTGEG  357 (449)
T ss_pred             HhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccch-hh--------hccCCceEEEEeeCCCC
Confidence            88999999999999877665433332      33689999999999864221 11        23456899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027949          166 VEEVFFSIARDIKQ  179 (216)
Q Consensus       166 i~~l~~~l~~~i~~  179 (216)
                      +++++++|.+.+..
T Consensus       358 I~~L~~~L~~~l~~  371 (449)
T PRK05291        358 IDELREAIKELAFG  371 (449)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998754

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.89  E-value=4.2e-22  Score=167.01  Aligned_cols=162  Identities=22%  Similarity=0.206  Sum_probs=114.9

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCccc----------ccccc-
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTIT-   81 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~-   81 (216)
                      ..++|+|+|.+|+|||||+++|++.... ....++.+.+.....+.+++  ..+.+|||||...          +..+. 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~--~~~~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGG--KTWRFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECC--EEEEEEECCCccccccccchHHHHHHHHH
Confidence            4599999999999999999999988753 44556666666667777777  4567999999522          22221 


Q ss_pred             ccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cChHHHHH-HHHHhCCeEEEEe
Q 027949           82 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA-VPTSKGQA-LADEYGIKFFETS  159 (216)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~-~~~~~~~~~~~~S  159 (216)
                      ..+++.+|++|+|+|++++.++.... ++..+..   .+.|+++|+||+|+.+.... ....+... +.....++++++|
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S  363 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS  363 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence            23568899999999999987776653 3333333   37899999999998642111 11111211 1222236899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHh
Q 027949          160 AKTNLNVEEVFFSIARDIKQRL  181 (216)
Q Consensus       160 a~~~~gi~~l~~~l~~~i~~~~  181 (216)
                      |++|.|++++|+.+.+.+....
T Consensus       364 Ak~g~gv~~lf~~i~~~~~~~~  385 (472)
T PRK03003        364 AKTGRAVDKLVPALETALESWD  385 (472)
T ss_pred             CCCCCCHHHHHHHHHHHHHHhc
Confidence            9999999999999988775443

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.89  E-value=6.5e-22  Score=165.88  Aligned_cols=155  Identities=20%  Similarity=0.227  Sum_probs=111.9

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCccc--------ccccccc
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTA   83 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~   83 (216)
                      ....+|+|+|.+|||||||+++|++.... ....++.+.+.....+.+++  ..+.+|||||.+.        +......
T Consensus        36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~  113 (472)
T PRK03003         36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEV  113 (472)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHH
Confidence            34479999999999999999999987643 34556666667777777777  5688999999752        2233455


Q ss_pred             ccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEecCC
Q 027949           84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKT  162 (216)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  162 (216)
                      +++.+|++|+|+|+++..+... ..+...+..   .+.|+++|+||+|+....    .+....+  ..+. .++++||++
T Consensus       114 ~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~----~~~~~~~--~~g~~~~~~iSA~~  183 (472)
T PRK03003        114 AMRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE----ADAAALW--SLGLGEPHPVSALH  183 (472)
T ss_pred             HHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc----hhhHHHH--hcCCCCeEEEEcCC
Confidence            6789999999999998755432 233333332   368999999999985321    1122222  2333 457999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 027949          163 NLNVEEVFFSIARDIKQ  179 (216)
Q Consensus       163 ~~gi~~l~~~l~~~i~~  179 (216)
                      |.|++++|++|++.+.+
T Consensus       184 g~gi~eL~~~i~~~l~~  200 (472)
T PRK03003        184 GRGVGDLLDAVLAALPE  200 (472)
T ss_pred             CCCcHHHHHHHHhhccc
Confidence            99999999999988755

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.89  E-value=3.4e-22  Score=137.66  Aligned_cols=167  Identities=24%  Similarity=0.506  Sum_probs=146.0

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||.++|.+..|||||+-.+.+.++..++..+.+..+...++...+..+.+.|||.+|++++..+.......+-+++|+
T Consensus        20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFm   99 (205)
T KOG1673|consen   20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFM   99 (205)
T ss_pred             EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEE
Confidence            48999999999999999999999999888999999999999999999999999999999999999998888899999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC----CCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q 027949           95 YDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADM----DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF  170 (216)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  170 (216)
                      ||++++.++..+..|++.........+| ++|++|.|+    +++.+......++.+++-.+++.|++|+..+.++.++|
T Consensus       100 FDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIF  178 (205)
T KOG1673|consen  100 FDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIF  178 (205)
T ss_pred             EecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHH
Confidence            9999999999999999988776654455 567999995    33334444566788888889999999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 027949          171 FSIARDIKQRLA  182 (216)
Q Consensus       171 ~~l~~~i~~~~~  182 (216)
                      ..+...+..-..
T Consensus       179 K~vlAklFnL~~  190 (205)
T KOG1673|consen  179 KIVLAKLFNLPW  190 (205)
T ss_pred             HHHHHHHhCCce
Confidence            998887765433

>PRK11058 GTPase HflX; Provisional

Probab=99.89  E-value=9.2e-22  Score=161.90  Aligned_cols=159  Identities=22%  Similarity=0.221  Sum_probs=114.5

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccc--ccccc------cccc
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF--RTITT------AYYR   86 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--~~~~~------~~~~   86 (216)
                      ..+|+|+|.+|||||||+|+|++..+.....++.+.+.....+.+.+. ..+.+|||+|....  ...+.      ..++
T Consensus       197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~  275 (426)
T PRK11058        197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETR  275 (426)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence            368999999999999999999988765445556666776667776552 26789999997321  11222      2357


Q ss_pred             cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCe-EEEEecCCCCC
Q 027949           87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIK-FFETSAKTNLN  165 (216)
Q Consensus        87 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~g  165 (216)
                      .+|++|+|+|++++.++..+..|...+......+.|+++|+||+|+.+...    ....  ....+.+ ++.+||++|.|
T Consensus       276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~----~~~~--~~~~~~~~~v~ISAktG~G  349 (426)
T PRK11058        276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE----PRID--RDEENKPIRVWLSAQTGAG  349 (426)
T ss_pred             cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh----HHHH--HHhcCCCceEEEeCCCCCC
Confidence            899999999999998777765555545444444789999999999853211    1111  1123444 58899999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 027949          166 VEEVFFSIARDIKQR  180 (216)
Q Consensus       166 i~~l~~~l~~~i~~~  180 (216)
                      +++++++|.+.+...
T Consensus       350 IdeL~e~I~~~l~~~  364 (426)
T PRK11058        350 IPLLFQALTERLSGE  364 (426)
T ss_pred             HHHHHHHHHHHhhhc
Confidence            999999999988654

>cd01889 SelB_euk SelB subfamily

Probab=99.88  E-value=5.2e-22  Score=148.05  Aligned_cols=159  Identities=19%  Similarity=0.152  Sum_probs=102.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC----CCC---CccccceeeeEEEEEEEEC------------CeEEEEEEEeCCCccc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG----SFT---TSFITTIGIDFKIRTIELD------------GKRIKLQIWDTAGQER   76 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~----~~~---~~~~~~~~~~~~~~~~~~~------------~~~~~~~i~D~~G~~~   76 (216)
                      ++|+++|.+|+|||||+++|+..    .+.   ....++.+.+.....+.+.            +..+.+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999873    111   1222333444444444443            2347899999999865


Q ss_pred             cccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-CccChHHHHHHH-H-----
Q 027949           77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK-RAVPTSKGQALA-D-----  149 (216)
Q Consensus        77 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~-~-----  149 (216)
                      +..........+|++++|+|+.+.........+.  +....  +.|+++|+||+|+.... .....++..+.. .     
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~  156 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEIL--CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT  156 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHHc--CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            4333333446689999999998754333322222  11222  57999999999985321 111122222211 1     


Q ss_pred             -HhCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 027949          150 -EYGIKFFETSAKTNLNVEEVFFSIARDIK  178 (216)
Q Consensus       150 -~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  178 (216)
                       ..+++++++||++|.|+++++++|.+.+.
T Consensus       157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             CcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence             13578999999999999999999988764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.88  E-value=6.1e-22  Score=136.43  Aligned_cols=114  Identities=38%  Similarity=0.671  Sum_probs=88.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCC--CccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFT--TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      ||+|+|++|||||||+++|++....  ....+..+................+.+||++|.+.+...+..++..+|++|+|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999998876  22333344445555667777777799999999998888888889999999999


Q ss_pred             EeCCCHhHHHHHHHH---HHHHHHhcCCCCcEEEEEeCCC
Q 027949           95 YDVTDESSFNNIRNW---IRNIEQHASDNVNKILVGNKAD  131 (216)
Q Consensus        95 ~d~~~~~~~~~~~~~---~~~~~~~~~~~~p~ivv~nK~D  131 (216)
                      ||++++.++..+..+   +..+.... .+.|++||+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence            999999999987554   55555433 3599999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.88  E-value=1.4e-21  Score=141.12  Aligned_cols=141  Identities=21%  Similarity=0.225  Sum_probs=99.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccc----cccccccccccEEE
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR----TITTAYYRGAMGIL   92 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~~~~~~~~~~d~~i   92 (216)
                      +|+++|.+|+|||||+++|.+.....  .       ....+.+...    .+||+||.....    ......++.+|+++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~~--~-------~~~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il   69 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTLA--R-------KTQAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI   69 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCccC--c-------cceEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence            79999999999999999988654211  1       1122233332    269999963211    11122367899999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC--eEEEEecCCCCCHHHHH
Q 027949           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI--KFFETSAKTNLNVEEVF  170 (216)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~l~  170 (216)
                      +|+|+++..++..  .|+..+    ..+.|+++++||+|+.+    ...+...+++...++  +++++||++|.|++++|
T Consensus        70 ~v~d~~~~~s~~~--~~~~~~----~~~~~ii~v~nK~Dl~~----~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~  139 (158)
T PRK15467         70 YVHGANDPESRLP--AGLLDI----GVSKRQIAVISKTDMPD----ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLV  139 (158)
T ss_pred             EEEeCCCcccccC--HHHHhc----cCCCCeEEEEEccccCc----ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHH
Confidence            9999998865422  333332    12579999999999854    234556677777774  89999999999999999


Q ss_pred             HHHHHHHHHH
Q 027949          171 FSIARDIKQR  180 (216)
Q Consensus       171 ~~l~~~i~~~  180 (216)
                      ++|.+.+.+.
T Consensus       140 ~~l~~~~~~~  149 (158)
T PRK15467        140 DYLASLTKQE  149 (158)
T ss_pred             HHHHHhchhh
Confidence            9998877654

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=1.7e-22  Score=141.71  Aligned_cols=164  Identities=24%  Similarity=0.381  Sum_probs=124.7

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcC---CCC----CccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccc
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDG---SFT----TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY   85 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~   85 (216)
                      +..+.|+++|..++|||||+.++...   .+-    ..-.++.+  ....++..++  ..+.+||.+|++..+++|..+|
T Consensus        15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvg--Lnig~i~v~~--~~l~fwdlgGQe~lrSlw~~yY   90 (197)
T KOG0076|consen   15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVG--LNIGTIEVCN--APLSFWDLGGQESLRSLWKKYY   90 (197)
T ss_pred             hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccc--eeecceeecc--ceeEEEEcCChHHHHHHHHHHH
Confidence            34478999999999999999886432   111    22334444  5556666665  6889999999999999999999


Q ss_pred             ccccEEEEEEeCCCHhHHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh---CCeEEEEecC
Q 027949           86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEY---GIKFFETSAK  161 (216)
Q Consensus        86 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~  161 (216)
                      ..+|++||+||+++++.|+.....+..+.. ..-.+.|+++.+||.|+.++............+...   ..++.++||.
T Consensus        91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal  170 (197)
T KOG0076|consen   91 WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSAL  170 (197)
T ss_pred             HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhh
Confidence            999999999999999999888776655543 334689999999999986543333333333323322   3789999999


Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q 027949          162 TNLNVEEVFFSIARDIKQR  180 (216)
Q Consensus       162 ~~~gi~~l~~~l~~~i~~~  180 (216)
                      +|+||++...|++..+..+
T Consensus       171 ~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  171 TGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hcccHHHHHHHHHHHHhhc
Confidence            9999999999999988776

>cd01895 EngA2 EngA2 subfamily

Probab=99.87  E-value=6.5e-21  Score=139.24  Aligned_cols=155  Identities=25%  Similarity=0.210  Sum_probs=103.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc-----------cccc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-----------ITTA   83 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~~~~   83 (216)
                      ++|+++|.+|+|||||+++|++.... ....++.+.......+..++  ..+.+||+||......           ....
T Consensus         3 ~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~   80 (174)
T cd01895           3 IRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK   80 (174)
T ss_pred             cEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence            78999999999999999999987632 22333444444444555666  4578999999643211           0122


Q ss_pred             ccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh----CCeEEEEe
Q 027949           84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEY----GIKFFETS  159 (216)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~S  159 (216)
                      .++.+|++++|+|+.++.+.... .++..+..   .+.|+++++||+|+.+............+....    ..+++++|
T Consensus        81 ~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  156 (174)
T cd01895          81 AIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFIS  156 (174)
T ss_pred             HHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEe
Confidence            45689999999999988664443 22222222   268999999999986532111111122222332    36899999


Q ss_pred             cCCCCCHHHHHHHHHHH
Q 027949          160 AKTNLNVEEVFFSIARD  176 (216)
Q Consensus       160 a~~~~gi~~l~~~l~~~  176 (216)
                      |+++.|++++++++.+.
T Consensus       157 a~~~~~i~~~~~~l~~~  173 (174)
T cd01895         157 ALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             ccCCCCHHHHHHHHHHh
Confidence            99999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.87  E-value=1.2e-20  Score=157.13  Aligned_cols=160  Identities=25%  Similarity=0.183  Sum_probs=112.6

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccc----------
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT----------   81 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----------   81 (216)
                      ...++|+++|.+|+|||||+++|++.+.. ....++.+.+.....+..++  ..+.+|||||........          
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~  247 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLR  247 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHH
Confidence            44589999999999999999999987643 33445555555556666666  478899999975433221          


Q ss_pred             -ccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHH-HHHHH----hCCeE
Q 027949           82 -TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQ-ALADE----YGIKF  155 (216)
Q Consensus        82 -~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~~~~~----~~~~~  155 (216)
                       ...++.+|++|+|+|++++.+..... ++..+..   .+.|+++|+||+|+.+  .....+... .+...    ..+++
T Consensus       248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~v  321 (429)
T TIGR03594       248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVK--DEKTREEFKKELRRKLPFLDFAPI  321 (429)
T ss_pred             HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCC--CHHHHHHHHHHHHHhcccCCCCce
Confidence             23578899999999999876655542 3333332   3689999999999862  111112222 22122    23799


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHH
Q 027949          156 FETSAKTNLNVEEVFFSIARDIKQR  180 (216)
Q Consensus       156 ~~~Sa~~~~gi~~l~~~l~~~i~~~  180 (216)
                      +++||++|.|++++|+++.+.+...
T Consensus       322 i~~SA~~g~~v~~l~~~i~~~~~~~  346 (429)
T TIGR03594       322 VFISALTGQGVDKLLDAIDEVYENA  346 (429)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999877654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.87  E-value=7e-21  Score=155.05  Aligned_cols=163  Identities=18%  Similarity=0.222  Sum_probs=118.6

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc----cc---cccccc
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT----IT---TAYYRG   87 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----~~---~~~~~~   87 (216)
                      ...|+|+|.||||||||+|+|++........+.++.......+.+.+. ..+.++|+||...-..    +.   ...+..
T Consensus       159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~-~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r  237 (390)
T PRK12298        159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE-RSFVVADIPGLIEGASEGAGLGIRFLKHLER  237 (390)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC-cEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence            348999999999999999999987765555566666777777776531 3589999999743211    11   123677


Q ss_pred             ccEEEEEEeCC---CHhHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC--CeEEEEec
Q 027949           88 AMGILLVYDVT---DESSFNNIRNWIRNIEQHAS--DNVNKILVGNKADMDESKRAVPTSKGQALADEYG--IKFFETSA  160 (216)
Q Consensus        88 ~d~~i~v~d~~---~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa  160 (216)
                      ++++++|+|++   +.+.+.....|+..+..+..  ...|+++|+||+|+.+.  ....+.+..+....+  .+++.+||
T Consensus       238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~--~el~~~l~~l~~~~~~~~~Vi~ISA  315 (390)
T PRK12298        238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE--EEAEERAKAIVEALGWEGPVYLISA  315 (390)
T ss_pred             CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh--HHHHHHHHHHHHHhCCCCCEEEEEC
Confidence            99999999988   44566666777777765432  35899999999998542  112233444544444  37899999


Q ss_pred             CCCCCHHHHHHHHHHHHHHH
Q 027949          161 KTNLNVEEVFFSIARDIKQR  180 (216)
Q Consensus       161 ~~~~gi~~l~~~l~~~i~~~  180 (216)
                      +++.|+++++++|.+.+.+.
T Consensus       316 ~tg~GIdeLl~~I~~~L~~~  335 (390)
T PRK12298        316 ASGLGVKELCWDLMTFIEEN  335 (390)
T ss_pred             CCCcCHHHHHHHHHHHhhhC
Confidence            99999999999999988664

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.86  E-value=4e-21  Score=164.17  Aligned_cols=156  Identities=22%  Similarity=0.326  Sum_probs=114.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCC-------CCCccc--------cceeeeEEEEEEEE---CCeEEEEEEEeCCCcccc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGS-------FTTSFI--------TTIGIDFKIRTIEL---DGKRIKLQIWDTAGQERF   77 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~-------~~~~~~--------~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~~   77 (216)
                      =+|+++|..++|||||+++|+...       +...+.        .+.+.......+.+   ++..+.+.||||||+..|
T Consensus         4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF   83 (595)
T TIGR01393         4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF   83 (595)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence            479999999999999999998742       111111        22333333333444   466689999999999999


Q ss_pred             ccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC---e
Q 027949           78 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI---K  154 (216)
Q Consensus        78 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~  154 (216)
                      ...+..+++.+|++|+|+|+++..+......|...+.    .+.|+++|+||+|+.+..   ......++...+++   .
T Consensus        84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~---~~~~~~el~~~lg~~~~~  156 (595)
T TIGR01393        84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD---PERVKKEIEEVIGLDASE  156 (595)
T ss_pred             HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC---HHHHHHHHHHHhCCCcce
Confidence            8888899999999999999998766666655554332    268999999999985421   12233445555554   4


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHH
Q 027949          155 FFETSAKTNLNVEEVFFSIARDIK  178 (216)
Q Consensus       155 ~~~~Sa~~~~gi~~l~~~l~~~i~  178 (216)
                      ++++||++|.|++++|++|.+.+.
T Consensus       157 vi~vSAktG~GI~~Lle~I~~~lp  180 (595)
T TIGR01393       157 AILASAKTGIGIEEILEAIVKRVP  180 (595)
T ss_pred             EEEeeccCCCCHHHHHHHHHHhCC
Confidence            899999999999999999988763

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.86  E-value=1.4e-20  Score=160.16  Aligned_cols=153  Identities=22%  Similarity=0.211  Sum_probs=112.5

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ...+|+++|..++|||||+++|.+..+.....++.+.+.....+.+++. ..+.||||||++.|..++...+..+|++|+
T Consensus        86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL  164 (587)
T TIGR00487        86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL  164 (587)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence            4478999999999999999999998877666566665665566666542 278999999999999888888899999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC---------CeEEEEecCCCC
Q 027949           94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG---------IKFFETSAKTNL  164 (216)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~  164 (216)
                      |+|+++......... +..+   ...+.|+++++||+|+.+.    ..+.....+...+         .+++++||++|+
T Consensus       165 VVda~dgv~~qT~e~-i~~~---~~~~vPiIVviNKiDl~~~----~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGe  236 (587)
T TIGR00487       165 VVAADDGVMPQTIEA-ISHA---KAANVPIIVAINKIDKPEA----NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGD  236 (587)
T ss_pred             EEECCCCCCHhHHHH-HHHH---HHcCCCEEEEEECcccccC----CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCC
Confidence            999987422122211 1222   1236899999999998542    2223333332222         479999999999


Q ss_pred             CHHHHHHHHHH
Q 027949          165 NVEEVFFSIAR  175 (216)
Q Consensus       165 gi~~l~~~l~~  175 (216)
                      |+++++++|..
T Consensus       237 GI~eLl~~I~~  247 (587)
T TIGR00487       237 GIDELLDMILL  247 (587)
T ss_pred             ChHHHHHhhhh
Confidence            99999999874

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.86  E-value=5.5e-21  Score=142.85  Aligned_cols=161  Identities=19%  Similarity=0.184  Sum_probs=103.5

Q ss_pred             CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcc----------ccccc
Q 027949           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----------RFRTI   80 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~   80 (216)
                      ..+..++|+|+|.+|+|||||+++|++..+.....++.+..........+   ..+.+|||||..          .+..+
T Consensus        20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~l~l~DtpG~~~~~~~~~~~~~~~~~   96 (196)
T PRK00454         20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVN---DKLRLVDLPGYGYAKVSKEEKEKWQKL   96 (196)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecC---CeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence            34466899999999999999999999876443344443333333323222   578999999942          23333


Q ss_pred             ccccccc---ccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-ccChHHHHHHHHHhCCeEE
Q 027949           81 TTAYYRG---AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR-AVPTSKGQALADEYGIKFF  156 (216)
Q Consensus        81 ~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~  156 (216)
                      ...+++.   .+++++++|..++...... .+...+..   .+.|+++++||+|+.+... ....+.+..+......+++
T Consensus        97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~  172 (196)
T PRK00454         97 IEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI  172 (196)
T ss_pred             HHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE
Confidence            3444443   4678888998775433221 11122221   2689999999999854221 1112223344444367999


Q ss_pred             EEecCCCCCHHHHHHHHHHHHH
Q 027949          157 ETSAKTNLNVEEVFFSIARDIK  178 (216)
Q Consensus       157 ~~Sa~~~~gi~~l~~~l~~~i~  178 (216)
                      ++||++|.|+++++++|.+.+.
T Consensus       173 ~~Sa~~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        173 LFSSLKKQGIDELRAAIAKWLA  194 (196)
T ss_pred             EEEcCCCCCHHHHHHHHHHHhc
Confidence            9999999999999999987664

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.86  E-value=3.7e-21  Score=144.58  Aligned_cols=160  Identities=18%  Similarity=0.171  Sum_probs=100.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCC---CccccceeeeEEEEEEEEC---------------------------C----
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFT---TSFITTIGIDFKIRTIELD---------------------------G----   61 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~---------------------------~----   61 (216)
                      ++|+++|..|+|||||++.+.+....   .......+.......+.+.                           +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            47899999999999999999765221   1111111111111111111                           0    


Q ss_pred             eEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-ccC
Q 027949           62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR-AVP  140 (216)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~  140 (216)
                      ....+.|||+||++.+...+...+..+|++++|+|+.++.........+..+...  ...|+++|+||+|+.+... ...
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~  158 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN  158 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence            1167899999999888777777778899999999998742111111222222222  1357899999999854211 111


Q ss_pred             hHHHHHHHHHh---CCeEEEEecCCCCCHHHHHHHHHHHH
Q 027949          141 TSKGQALADEY---GIKFFETSAKTNLNVEEVFFSIARDI  177 (216)
Q Consensus       141 ~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~i  177 (216)
                      .+.++.+....   +++++++||++|+|+++++++|.+.+
T Consensus       159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l  198 (203)
T cd01888         159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI  198 (203)
T ss_pred             HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence            23333333332   57899999999999999999998644

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd04163 Era Era subfamily

Probab=99.86  E-value=2.1e-20  Score=135.51  Aligned_cols=155  Identities=18%  Similarity=0.134  Sum_probs=101.7

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccc-cceeeeEEEEEEEECCeEEEEEEEeCCCcccccc--------cccccc
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFI-TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------ITTAYY   85 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~   85 (216)
                      ..+|+++|++|+|||||++++++........ +..+.......+...  ...+.+||+||......        .....+
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   80 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDD--DAQIIFVDTPGIHKPKKKLGERMVKAAWSAL   80 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcC--CeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence            4789999999999999999999876532221 111211222222223  36789999999654322        223456


Q ss_pred             ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEecCCCC
Q 027949           86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNL  164 (216)
Q Consensus        86 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~  164 (216)
                      ..+|++++|+|+.++.. .....+...+...   +.|+++|+||+|+... .....+....+....+ .+++++|++++.
T Consensus        81 ~~~d~i~~v~d~~~~~~-~~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  155 (168)
T cd04163          81 KDVDLVLFVVDASEPIG-EGDEFILELLKKS---KTPVILVLNKIDLVKD-KEDLLPLLEKLKELGPFAEIFPISALKGE  155 (168)
T ss_pred             HhCCEEEEEEECCCccC-chHHHHHHHHHHh---CCCEEEEEEchhcccc-HHHHHHHHHHHHhccCCCceEEEEeccCC
Confidence            78999999999998721 1112222333322   5899999999998532 2222333444444443 689999999999


Q ss_pred             CHHHHHHHHHHH
Q 027949          165 NVEEVFFSIARD  176 (216)
Q Consensus       165 gi~~l~~~l~~~  176 (216)
                      |+++++++|.+.
T Consensus       156 ~~~~l~~~l~~~  167 (168)
T cd04163         156 NVDELLEEIVKY  167 (168)
T ss_pred             ChHHHHHHHHhh
Confidence            999999999765

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.86  E-value=6.9e-21  Score=140.44  Aligned_cols=149  Identities=16%  Similarity=0.185  Sum_probs=95.9

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcc----------cccccc
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----------RFRTIT   81 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~   81 (216)
                      +...++|+|+|.+|+|||||+++|++..+.....++.+.+.....+..++   .+.+||+||..          .+..+.
T Consensus        15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~   91 (179)
T TIGR03598        15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLI   91 (179)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHH
Confidence            35568999999999999999999998764333333333333333333333   68999999952          233333


Q ss_pred             ccccc---cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-CccChHHHHHHHHHhC--CeE
Q 027949           82 TAYYR---GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK-RAVPTSKGQALADEYG--IKF  155 (216)
Q Consensus        82 ~~~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~--~~~  155 (216)
                      ..+++   .++++++|+|++++-+.... .++..+..   .+.|+++|+||+|+.++. .....++++......+  +.+
T Consensus        92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v  167 (179)
T TIGR03598        92 EEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSV  167 (179)
T ss_pred             HHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCce
Confidence            34444   35799999999875443333 22233322   268999999999985422 1222344455555544  589


Q ss_pred             EEEecCCCCCHH
Q 027949          156 FETSAKTNLNVE  167 (216)
Q Consensus       156 ~~~Sa~~~~gi~  167 (216)
                      +++||++|+|++
T Consensus       168 ~~~Sa~~g~gi~  179 (179)
T TIGR03598       168 QLFSSLKKTGID  179 (179)
T ss_pred             EEEECCCCCCCC
Confidence            999999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.85  E-value=1.5e-20  Score=163.56  Aligned_cols=158  Identities=20%  Similarity=0.211  Sum_probs=113.3

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      .....|+|+|..++|||||+++|.+..+.....++.+.+.....+.+++  ..++||||||+..|..++...+..+|++|
T Consensus       288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI  365 (787)
T PRK05306        288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV  365 (787)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence            4558899999999999999999998877655555555555555666766  67899999999999988888889999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHH---HHHHHhC--CeEEEEecCCCCCHH
Q 027949           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQ---ALADEYG--IKFFETSAKTNLNVE  167 (216)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~---~~~~~~~--~~~~~~Sa~~~~gi~  167 (216)
                      +|||+.+...-.....| ..+   ...+.|++|++||+|+.+........++.   .+...++  ++++++||++|.|++
T Consensus       366 LVVdAddGv~~qT~e~i-~~a---~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~  441 (787)
T PRK05306        366 LVVAADDGVMPQTIEAI-NHA---KAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGID  441 (787)
T ss_pred             EEEECCCCCCHhHHHHH-HHH---HhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCch
Confidence            99999874221111111 112   22378999999999985421110111111   1122333  689999999999999


Q ss_pred             HHHHHHHHH
Q 027949          168 EVFFSIARD  176 (216)
Q Consensus       168 ~l~~~l~~~  176 (216)
                      ++|++|...
T Consensus       442 eLle~I~~~  450 (787)
T PRK05306        442 ELLEAILLQ  450 (787)
T ss_pred             HHHHhhhhh
Confidence            999998753

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.85  E-value=2.7e-20  Score=158.98  Aligned_cols=155  Identities=21%  Similarity=0.248  Sum_probs=116.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCC---CCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGS---FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      +.|+++|..++|||||+++|++..   +..+..++.+.+.....+..++  ..+.+||+||++.|.......+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            468999999999999999999743   3344556666676666677776  78999999999988887788889999999


Q ss_pred             EEEeCCC---HhHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCc-cChHHHHHHHHHh----CCeEEEEecCCC
Q 027949           93 LVYDVTD---ESSFNNIRNWIRNIEQHASDNVN-KILVGNKADMDESKRA-VPTSKGQALADEY----GIKFFETSAKTN  163 (216)
Q Consensus        93 ~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~----~~~~~~~Sa~~~  163 (216)
                      +|+|+++   +++.+.+.    .+..   .+.| +++|+||+|+.+.... ...+++..+....    +++++++||++|
T Consensus        79 LVVDa~~G~~~qT~ehl~----il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG  151 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHLA----VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG  151 (581)
T ss_pred             EEEECCCCCcHHHHHHHH----HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence            9999988   44444332    2222   2567 9999999998652211 1233455555544    478999999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q 027949          164 LNVEEVFFSIARDIKQ  179 (216)
Q Consensus       164 ~gi~~l~~~l~~~i~~  179 (216)
                      .|+++++.+|.+.+..
T Consensus       152 ~GI~eL~~~L~~l~~~  167 (581)
T TIGR00475       152 QGIGELKKELKNLLES  167 (581)
T ss_pred             CCchhHHHHHHHHHHh
Confidence            9999999988776544

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.85  E-value=1.7e-20  Score=162.04  Aligned_cols=161  Identities=17%  Similarity=0.197  Sum_probs=111.3

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEE--EEECCeEEEEEEEeCCCccccccccccccccccE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRT--IELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      .....|+|+|..++|||||+++|....+.....++.+.+.....  +..++....+.||||||++.|..++...+..+|+
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi  321 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI  321 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence            34578999999999999999999987766544444443332222  3333445789999999999999988888999999


Q ss_pred             EEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHH---HHHHhC--CeEEEEecCCCCC
Q 027949           91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQA---LADEYG--IKFFETSAKTNLN  165 (216)
Q Consensus        91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~---~~~~~~--~~~~~~Sa~~~~g  165 (216)
                      +|+|+|+.+.........+ ..+.   ..+.|++|++||+|+.+.........+..   +....+  ++++++||++|.|
T Consensus       322 aILVVDA~dGv~~QT~E~I-~~~k---~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~G  397 (742)
T CHL00189        322 AILIIAADDGVKPQTIEAI-NYIQ---AANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTN  397 (742)
T ss_pred             EEEEEECcCCCChhhHHHH-HHHH---hcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCC
Confidence            9999999874322222111 1222   23689999999999864211101111111   122233  6899999999999


Q ss_pred             HHHHHHHHHHHH
Q 027949          166 VEEVFFSIARDI  177 (216)
Q Consensus       166 i~~l~~~l~~~i  177 (216)
                      +++++++|....
T Consensus       398 IdeLle~I~~l~  409 (742)
T CHL00189        398 IDKLLETILLLA  409 (742)
T ss_pred             HHHHHHhhhhhh
Confidence            999999987753

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.85  E-value=5.2e-23  Score=145.81  Aligned_cols=185  Identities=32%  Similarity=0.565  Sum_probs=155.1

Q ss_pred             CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeE-EEEEEEeCCCcccccccccccccccc
Q 027949           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR-IKLQIWDTAGQERFRTITTAYYRGAM   89 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (216)
                      ..++.++++|+|..|+|||+++.+.....+...+..+.+.++.....+++..+ +.+.+||..|++++..+..-+++.++
T Consensus        21 kr~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~  100 (229)
T KOG4423|consen   21 KREHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAH  100 (229)
T ss_pred             hhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCc
Confidence            35778999999999999999999999999999999999999998888887755 67889999999999999999999999


Q ss_pred             EEEEEEeCCCHhHHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEecCCCC
Q 027949           90 GILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKILVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNL  164 (216)
Q Consensus        90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  164 (216)
                      +..+|||+++.-+|+....|.+.+.....    ...|+++..||+|...............+.+++|+ .++++|++.+.
T Consensus       101 ~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenk  180 (229)
T KOG4423|consen  101 GAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENK  180 (229)
T ss_pred             ceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecccccc
Confidence            99999999999999999999998866432    34677888999998543222334677788889995 89999999999


Q ss_pred             CHHHHHHHHHHHHHHHhhcccCCCCCccccc
Q 027949          165 NVEEVFFSIARDIKQRLADTDSRAEPQTIKI  195 (216)
Q Consensus       165 gi~~l~~~l~~~i~~~~~~~~~~~~~~~~~~  195 (216)
                      +++|+...|++++.-+-.+.-+..++...++
T Consensus       181 ni~Ea~r~lVe~~lvnd~q~~~s~~~~~~~~  211 (229)
T KOG4423|consen  181 NIPEAQRELVEKILVNDEQPIKSSAVDGDKI  211 (229)
T ss_pred             ChhHHHHHHHHHHHhhccCCccccccccccc
Confidence            9999999999999887555544444444333

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.85  E-value=2.6e-20  Score=155.26  Aligned_cols=146  Identities=23%  Similarity=0.227  Sum_probs=106.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCccc--------cccccccccc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTAYYR   86 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~   86 (216)
                      .+|+|+|.+|+|||||+++|.+.... ....++.+.+.....+.+++  ..+.+|||||...        +......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            58999999999999999999987642 33445566667777777877  7899999999875        2222345678


Q ss_pred             cccEEEEEEeCCCHhHHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEecCCC
Q 027949           87 GAMGILLVYDVTDESSFN--NIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTN  163 (216)
Q Consensus        87 ~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  163 (216)
                      .+|++|+|+|+.++.+..  .+..|+..   .   +.|+++|+||+|+.+  .   .....++ ..+++ .++++||.+|
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~---~---~~piilv~NK~D~~~--~---~~~~~~~-~~lg~~~~~~iSa~~g  147 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEEIAKILRK---S---NKPVILVVNKVDGPD--E---EADAYEF-YSLGLGEPYPISAEHG  147 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHHH---c---CCcEEEEEECccCcc--c---hhhHHHH-HhcCCCCCEEEEeeCC
Confidence            899999999998753332  23333332   2   689999999999643  1   1222222 34555 4899999999


Q ss_pred             CCHHHHHHHHHH
Q 027949          164 LNVEEVFFSIAR  175 (216)
Q Consensus       164 ~gi~~l~~~l~~  175 (216)
                      .|+++++++|..
T Consensus       148 ~gv~~l~~~I~~  159 (435)
T PRK00093        148 RGIGDLLDAILE  159 (435)
T ss_pred             CCHHHHHHHHHh
Confidence            999999999987

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.85  E-value=8.8e-21  Score=140.95  Aligned_cols=159  Identities=22%  Similarity=0.226  Sum_probs=109.2

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCC------------------ccccceeeeEEEEEEE--ECCeEEEEEEEeCCC
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTT------------------SFITTIGIDFKIRTIE--LDGKRIKLQIWDTAG   73 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~--~~~~~~~~~i~D~~G   73 (216)
                      ...+|+|+|..++|||||+++|+...-..                  +.....+.......+.  ..+  ..++++|+||
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~--~~i~~iDtPG   79 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENN--RKITLIDTPG   79 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESS--EEEEEEEESS
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccc--cceeeccccc
Confidence            45899999999999999999998644211                  1112333444455555  455  7889999999


Q ss_pred             ccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHH-HHHHHh-
Q 027949           74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQ-ALADEY-  151 (216)
Q Consensus        74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~~~~~~-  151 (216)
                      +..|.......++.+|++|+|+|+.+.... .....+..+...   +.|++||+||+|+.........++.. .+.... 
T Consensus        80 ~~~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~~---~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~  155 (188)
T PF00009_consen   80 HEDFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILREL---GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYG  155 (188)
T ss_dssp             SHHHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHHT---T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccceeecccceecccccceeeeeccccccc-cccccccccccc---ccceEEeeeeccchhhhHHHHHHHHHHHhccccc
Confidence            988877777778899999999999876432 223333334333   68899999999986221111122222 333333 


Q ss_pred             -----CCeEEEEecCCCCCHHHHHHHHHHHHH
Q 027949          152 -----GIKFFETSAKTNLNVEEVFFSIARDIK  178 (216)
Q Consensus       152 -----~~~~~~~Sa~~~~gi~~l~~~l~~~i~  178 (216)
                           .++++++||.+|.|+++|++.|.+.+.
T Consensus       156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  156 ENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             cCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence                 257999999999999999999988753

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.85  E-value=3.1e-20  Score=158.76  Aligned_cols=146  Identities=21%  Similarity=0.246  Sum_probs=111.0

Q ss_pred             cCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccc------ccccc--ccccEEEE
Q 027949           22 GDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI------TTAYY--RGAMGILL   93 (216)
Q Consensus        22 G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~~i~   93 (216)
                      |.+|+|||||+|++.+......+.++.+.+.....+.+++  .++.+|||||..++...      ...++  ..+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            8999999999999999887666677777777777777777  56899999998776543      23333  36899999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q 027949           94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI  173 (216)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  173 (216)
                      |+|+++.+..   ..+...+.+   .+.|+++|+||+|+.+.. .. ..+.+.+.+..+++++++||++|+|++++++++
T Consensus        79 VvDat~ler~---l~l~~ql~~---~~~PiIIVlNK~Dl~~~~-~i-~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i  150 (591)
T TIGR00437        79 VVDASNLERN---LYLTLQLLE---LGIPMILALNLVDEAEKK-GI-RIDEEKLEERLGVPVVPTSATEGRGIERLKDAI  150 (591)
T ss_pred             EecCCcchhh---HHHHHHHHh---cCCCEEEEEehhHHHHhC-CC-hhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHH
Confidence            9999875432   222222322   378999999999985422 22 234677788889999999999999999999999


Q ss_pred             HHHH
Q 027949          174 ARDI  177 (216)
Q Consensus       174 ~~~i  177 (216)
                      .+..
T Consensus       151 ~~~~  154 (591)
T TIGR00437       151 RKAI  154 (591)
T ss_pred             HHHh
Confidence            8764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.85  E-value=3.9e-20  Score=138.90  Aligned_cols=115  Identities=21%  Similarity=0.427  Sum_probs=87.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEEC--CeEEEEEEEeCCCccccccccccccccc-cEEEE
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD--GKRIKLQIWDTAGQERFRTITTAYYRGA-MGILL   93 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~-d~~i~   93 (216)
                      +|+++|++|||||||+++|....+...+.++ .  .....+...  +....+.+||+||+..++..+..+++.+ +++||
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~--~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~   78 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-E--PNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVF   78 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-e--ecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEE
Confidence            5899999999999999999998776554433 1  222222221  2346799999999999988888888998 99999


Q ss_pred             EEeCCCH-hHHHHHHHHHHHHHHh---cCCCCcEEEEEeCCCCCC
Q 027949           94 VYDVTDE-SSFNNIRNWIRNIEQH---ASDNVNKILVGNKADMDE  134 (216)
Q Consensus        94 v~d~~~~-~~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~Dl~~  134 (216)
                      |+|+.+. .++..+..|+..+...   ...+.|++|++||+|+..
T Consensus        79 VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          79 VVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             EEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence            9999987 6777776665544322   224799999999999864

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.84  E-value=1e-19  Score=151.71  Aligned_cols=160  Identities=26%  Similarity=0.205  Sum_probs=110.3

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCC-CCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccc-----------
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-----------   80 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------   80 (216)
                      ...++|+|+|.+|+|||||+++|++... .....++.+.+.....+..++  ..+.+|||||.......           
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~  248 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR  248 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence            3469999999999999999999998753 334455555555555566666  56789999996432211           


Q ss_pred             cccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH----hCCeEE
Q 027949           81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADE----YGIKFF  156 (216)
Q Consensus        81 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~  156 (216)
                      ....++.+|++|+|+|++++.+..... +...+..   .+.|+++|+||+|+.+..  ...+....+...    ..++++
T Consensus       249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~--~~~~~~~~~~~~l~~~~~~~i~  322 (435)
T PRK00093        249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEK--TMEEFKKELRRRLPFLDYAPIV  322 (435)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHH--HHHHHHHHHHHhcccccCCCEE
Confidence            123567899999999999876655432 3333332   268999999999986321  111111112111    237999


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHH
Q 027949          157 ETSAKTNLNVEEVFFSIARDIKQR  180 (216)
Q Consensus       157 ~~Sa~~~~gi~~l~~~l~~~i~~~  180 (216)
                      ++||++|.|++++++++.+.+...
T Consensus       323 ~~SA~~~~gv~~l~~~i~~~~~~~  346 (435)
T PRK00093        323 FISALTGQGVDKLLEAIDEAYENA  346 (435)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999998876554

>PRK00089 era GTPase Era; Reviewed

Probab=99.84  E-value=6e-20  Score=145.51  Aligned_cols=157  Identities=18%  Similarity=0.144  Sum_probs=103.8

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCcc-ccceeeeEEEEEEEECCeEEEEEEEeCCCccccc--------ccccccc
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSF-ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR--------TITTAYY   85 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~   85 (216)
                      .-.|+|+|.+|||||||+|+|++..+.... .+.++..........++  ..+.+|||||.....        ......+
T Consensus         5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~--~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~   82 (292)
T PRK00089          5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDD--AQIIFVDTPGIHKPKRALNRAMNKAAWSSL   82 (292)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCC--ceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence            357999999999999999999998764322 22222222222223333  689999999964322        1223356


Q ss_pred             ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEecCCCC
Q 027949           86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNL  164 (216)
Q Consensus        86 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~  164 (216)
                      ..+|++++|+|++++.. ......+..+.   ..+.|+++|+||+|+... ..........+....+ .+++++||+++.
T Consensus        83 ~~~D~il~vvd~~~~~~-~~~~~i~~~l~---~~~~pvilVlNKiDl~~~-~~~l~~~~~~l~~~~~~~~i~~iSA~~~~  157 (292)
T PRK00089         83 KDVDLVLFVVDADEKIG-PGDEFILEKLK---KVKTPVILVLNKIDLVKD-KEELLPLLEELSELMDFAEIVPISALKGD  157 (292)
T ss_pred             hcCCEEEEEEeCCCCCC-hhHHHHHHHHh---hcCCCEEEEEECCcCCCC-HHHHHHHHHHHHhhCCCCeEEEecCCCCC
Confidence            78999999999988321 11122222222   226899999999998531 1222334444444444 689999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 027949          165 NVEEVFFSIARDIK  178 (216)
Q Consensus       165 gi~~l~~~l~~~i~  178 (216)
                      |+++++++|.+.+.
T Consensus       158 gv~~L~~~L~~~l~  171 (292)
T PRK00089        158 NVDELLDVIAKYLP  171 (292)
T ss_pred             CHHHHHHHHHHhCC
Confidence            99999999988764

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.84  E-value=5.5e-20  Score=153.13  Aligned_cols=151  Identities=21%  Similarity=0.221  Sum_probs=109.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCcc--------cccccccccccc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE--------RFRTITTAYYRG   87 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~   87 (216)
                      +|+|+|.+|+|||||+|+|++.... ....++.+.+.....+.+++  ..+.+|||||..        .+......+++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            5899999999999999999987643 33445666677777777877  568999999963        333445667789


Q ss_pred             ccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEecCCCCCH
Q 027949           88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNV  166 (216)
Q Consensus        88 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi  166 (216)
                      +|++++|+|+.++.+... ..+...+..   .+.|+++|+||+|+.+...  .   ..+ ...++. .++++||.+|.|+
T Consensus        79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~---~~~piilVvNK~D~~~~~~--~---~~~-~~~lg~~~~~~vSa~~g~gv  148 (429)
T TIGR03594        79 ADVILFVVDGREGLTPED-EEIAKWLRK---SGKPVILVANKIDGKKEDA--V---AAE-FYSLGFGEPIPISAEHGRGI  148 (429)
T ss_pred             CCEEEEEEeCCCCCCHHH-HHHHHHHHH---hCCCEEEEEECccCCcccc--c---HHH-HHhcCCCCeEEEeCCcCCCh
Confidence            999999999987533222 112222222   2689999999999854221  1   122 234565 8999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027949          167 EEVFFSIARDIKQ  179 (216)
Q Consensus       167 ~~l~~~l~~~i~~  179 (216)
                      +++++++.+.+..
T Consensus       149 ~~ll~~i~~~l~~  161 (429)
T TIGR03594       149 GDLLDAILELLPE  161 (429)
T ss_pred             HHHHHHHHHhcCc
Confidence            9999999887744

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.84  E-value=1.3e-19  Score=158.47  Aligned_cols=153  Identities=16%  Similarity=0.170  Sum_probs=114.9

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccc----------cccc
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI----------TTAY   84 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------~~~~   84 (216)
                      .++|+++|.+|+|||||+|+|++......+.++.+.+.....+..++  .++.+||+||..++...          ...+
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~--~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCc--eEEEEEECCCccccccccccccHHHHHHHHH
Confidence            37899999999999999999999876555567777666666666555  67899999998765431          1123


Q ss_pred             c--ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCC
Q 027949           85 Y--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT  162 (216)
Q Consensus        85 ~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (216)
                      +  ..+|++++|+|+++.+...   .+...+.+   .+.|+++|+||+|+.+. . ....+...+.+.++++++++||.+
T Consensus        81 l~~~~aD~vI~VvDat~ler~l---~l~~ql~e---~giPvIvVlNK~Dl~~~-~-~i~id~~~L~~~LG~pVvpiSA~~  152 (772)
T PRK09554         81 ILSGDADLLINVVDASNLERNL---YLTLQLLE---LGIPCIVALNMLDIAEK-Q-NIRIDIDALSARLGCPVIPLVSTR  152 (772)
T ss_pred             HhccCCCEEEEEecCCcchhhH---HHHHHHHH---cCCCEEEEEEchhhhhc-c-CcHHHHHHHHHHhCCCEEEEEeec
Confidence            2  4789999999998865422   23333333   27899999999998532 2 223456777888999999999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027949          163 NLNVEEVFFSIARDI  177 (216)
Q Consensus       163 ~~gi~~l~~~l~~~i  177 (216)
                      |+|++++++.+.+..
T Consensus       153 g~GIdeL~~~I~~~~  167 (772)
T PRK09554        153 GRGIEALKLAIDRHQ  167 (772)
T ss_pred             CCCHHHHHHHHHHhh
Confidence            999999999988764

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=1.9e-20  Score=133.21  Aligned_cols=186  Identities=26%  Similarity=0.501  Sum_probs=154.0

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ...++++++|..|.||||++++.+..++...+.++.+.+.....+..+-..+.+..|||.|++.+..+.+.++-+....|
T Consensus         8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi   87 (216)
T KOG0096|consen    8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI   87 (216)
T ss_pred             cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence            34699999999999999999999999999999999999888888777666799999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS  172 (216)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  172 (216)
                      ++||+...-++..+..|...+...+. ++|+++++||.|..+..   .......+.+..++.|++.||+.+.+++.-|.|
T Consensus        88 imFdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~r~---~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~  163 (216)
T KOG0096|consen   88 IMFDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKARK---VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLW  163 (216)
T ss_pred             EEeeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceeccccc---cccccceeeecccceeEEeecccccccccchHH
Confidence            99999999999999999999988876 59999999999975422   233444566677789999999999999999999


Q ss_pred             HHHHHHHHhhccc---CCCCCccccccCCCCcc
Q 027949          173 IARDIKQRLADTD---SRAEPQTIKINQPDQAG  202 (216)
Q Consensus       173 l~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~  202 (216)
                      +.+.+.-...-.-   .-..|..+..+...+.|
T Consensus       164 LarKl~G~p~Lefva~paLaPpev~~d~~~~~q  196 (216)
T KOG0096|consen  164 LARKLTGDPSLEFVAMPALAPPEVIMDYWLQRQ  196 (216)
T ss_pred             HhhhhcCCCCeEEEeccccCCCeeeccchhhHH
Confidence            9998876544322   22334455555554443

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=3.1e-21  Score=131.26  Aligned_cols=159  Identities=23%  Similarity=0.398  Sum_probs=119.8

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ...+|+++|.-|+||||++.++.-.+... ..|+.+  +.+..+.+.+  .++.+||.+|+-+.+..|+.|+.+.|++||
T Consensus        17 ~e~rililgldGaGkttIlyrlqvgevvt-tkPtig--fnve~v~yKN--Lk~~vwdLggqtSirPyWRcYy~dt~avIy   91 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGEVVT-TKPTIG--FNVETVPYKN--LKFQVWDLGGQTSIRPYWRCYYADTDAVIY   91 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCcccc-cCCCCC--cCcccccccc--ccceeeEccCcccccHHHHHHhcccceEEE
Confidence            45899999999999999999888776543 344444  4455555666  889999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHH-HHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHH-----HHHhCCeEEEEecCCCCCHH
Q 027949           94 VYDVTDESSFNNIRNWIRNI-EQHASDNVNKILVGNKADMDESKRAVPTSKGQAL-----ADEYGIKFFETSAKTNLNVE  167 (216)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~-~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~  167 (216)
                      |+|.+|.+........+..+ .+..-....++|++||.|....   ....++...     .+..-+.+|.+||.+|+|++
T Consensus        92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~---~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld  168 (182)
T KOG0072|consen   92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA---LTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLD  168 (182)
T ss_pred             EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh---hhHHHHHHHhChHHHhhheeEEEeeccccccCCc
Confidence            99999998777666644444 3333345777888999997532   222222111     12223799999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027949          168 EVFFSIARDIKQR  180 (216)
Q Consensus       168 ~l~~~l~~~i~~~  180 (216)
                      ..++||.+.+.++
T Consensus       169 ~~~DWL~~~l~~~  181 (182)
T KOG0072|consen  169 PAMDWLQRPLKSR  181 (182)
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999987653

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.84  E-value=1.6e-19  Score=158.05  Aligned_cols=157  Identities=18%  Similarity=0.162  Sum_probs=109.9

Q ss_pred             CCCceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCccc--------ccccc
Q 027949           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTIT   81 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~   81 (216)
                      ......+|+|+|.+|+|||||+|+|++.... ....++.+.+.......+++  ..+.+|||||...        +....
T Consensus       271 ~~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~  348 (712)
T PRK09518        271 GPKAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQA  348 (712)
T ss_pred             ccccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHH
Confidence            3445588999999999999999999987642 34456666666666667777  5788999999653        22233


Q ss_pred             ccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEec
Q 027949           82 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSA  160 (216)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa  160 (216)
                      ..+++.+|++|+|+|+.+.-.... ..|...+..   .+.|+++|+||+|+....     .....+. .++. ..+++||
T Consensus       349 ~~~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~-----~~~~~~~-~lg~~~~~~iSA  418 (712)
T PRK09518        349 QIAVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE-----YDAAEFW-KLGLGEPYPISA  418 (712)
T ss_pred             HHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch-----hhHHHHH-HcCCCCeEEEEC
Confidence            456788999999999976422111 133334432   378999999999974311     1122222 2232 4679999


Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q 027949          161 KTNLNVEEVFFSIARDIKQ  179 (216)
Q Consensus       161 ~~~~gi~~l~~~l~~~i~~  179 (216)
                      ++|.|+++++++|++.+..
T Consensus       419 ~~g~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        419 MHGRGVGDLLDEALDSLKV  437 (712)
T ss_pred             CCCCCchHHHHHHHHhccc
Confidence            9999999999999988754

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.84  E-value=1.5e-20  Score=127.53  Aligned_cols=160  Identities=23%  Similarity=0.355  Sum_probs=121.7

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..+||+++|..++|||||++.|.+.+.. +..|+.+  +....+.+++. +.+++||.+|+...+..|.+||.+.|++||
T Consensus        16 rEirilllGldnAGKTT~LKqL~sED~~-hltpT~G--Fn~k~v~~~g~-f~LnvwDiGGqr~IRpyWsNYyenvd~lIy   91 (185)
T KOG0074|consen   16 REIRILLLGLDNAGKTTFLKQLKSEDPR-HLTPTNG--FNTKKVEYDGT-FHLNVWDIGGQRGIRPYWSNYYENVDGLIY   91 (185)
T ss_pred             ceEEEEEEecCCCcchhHHHHHccCChh-hccccCC--cceEEEeecCc-EEEEEEecCCccccchhhhhhhhccceEEE
Confidence            4499999999999999999999987754 4556665  55666677653 789999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCCccChHHHHHH--HHHhCCeEEEEecCCCCCHHHHH
Q 027949           94 VYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDESKRAVPTSKGQAL--ADEYGIKFFETSAKTNLNVEEVF  170 (216)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~gi~~l~  170 (216)
                      |+|.+|...|+++...+.++.+ ..-...|+++..||.|+.-+...........+  .+..-+.+-+|||.+++|+.+-.
T Consensus        92 VIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~  171 (185)
T KOG0074|consen   92 VIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGS  171 (185)
T ss_pred             EEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcc
Confidence            9999999888887776555544 22346899999999997432221111111111  12223789999999999999999


Q ss_pred             HHHHHHH
Q 027949          171 FSIARDI  177 (216)
Q Consensus       171 ~~l~~~i  177 (216)
                      +|+..+.
T Consensus       172 ~wv~sn~  178 (185)
T KOG0074|consen  172 DWVQSNP  178 (185)
T ss_pred             hhhhcCC
Confidence            9887543

>cd00880 Era_like Era (E

Probab=99.84  E-value=6.5e-20  Score=131.71  Aligned_cols=152  Identities=20%  Similarity=0.139  Sum_probs=102.8

Q ss_pred             EEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc-------ccccccccccEE
Q 027949           20 LIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-------ITTAYYRGAMGI   91 (216)
Q Consensus        20 v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~~d~~   91 (216)
                      |+|++|+|||||++++.+.... .......+.......+.... ...+.+||+||......       ....+++.+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999987654 33333333334333433331 36889999999765443       233467889999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChH--HHHHHHHHhCCeEEEEecCCCCCHHHH
Q 027949           92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTS--KGQALADEYGIKFFETSAKTNLNVEEV  169 (216)
Q Consensus        92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~gi~~l  169 (216)
                      ++|+|+.++....... +...+.   ..+.|+++|+||+|+..........  .........+.+++++|+.++.|++++
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l  155 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL  155 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence            9999999887665554 222222   2378999999999986432111111  112222333579999999999999999


Q ss_pred             HHHHHHH
Q 027949          170 FFSIARD  176 (216)
Q Consensus       170 ~~~l~~~  176 (216)
                      +.+|.+.
T Consensus       156 ~~~l~~~  162 (163)
T cd00880         156 REALIEA  162 (163)
T ss_pred             HHHHHhh
Confidence            9999875

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.83  E-value=9.2e-20  Score=155.99  Aligned_cols=159  Identities=26%  Similarity=0.316  Sum_probs=113.0

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCC--CCC-------------ccccceeeeEEEEEEEE---CCeEEEEEEEeCCCcc
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGS--FTT-------------SFITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQE   75 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~--~~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~   75 (216)
                      ..-+|+|+|..++|||||+.+|+...  +..             +...+.+.......+.+   ++..+.++||||||+.
T Consensus         6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~   85 (600)
T PRK05433          6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV   85 (600)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence            44589999999999999999997632  110             11122222222333333   4556899999999999


Q ss_pred             ccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC--
Q 027949           76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI--  153 (216)
Q Consensus        76 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--  153 (216)
                      .|...+..+++.+|++|+|+|+++.........|.....    .+.|+++|+||+|+.+..   .......+...+++  
T Consensus        86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~----~~lpiIvViNKiDl~~a~---~~~v~~ei~~~lg~~~  158 (600)
T PRK05433         86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NDLEIIPVLNKIDLPAAD---PERVKQEIEDVIGIDA  158 (600)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEECCCCCccc---HHHHHHHHHHHhCCCc
Confidence            998888889999999999999998755555545543321    268999999999985422   12223344444554  


Q ss_pred             -eEEEEecCCCCCHHHHHHHHHHHHHH
Q 027949          154 -KFFETSAKTNLNVEEVFFSIARDIKQ  179 (216)
Q Consensus       154 -~~~~~Sa~~~~gi~~l~~~l~~~i~~  179 (216)
                       .++++||++|.|+++++++|.+.+..
T Consensus       159 ~~vi~iSAktG~GI~~Ll~~I~~~lp~  185 (600)
T PRK05433        159 SDAVLVSAKTGIGIEEVLEAIVERIPP  185 (600)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence             48999999999999999999987653

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.83  E-value=9.8e-20  Score=146.60  Aligned_cols=149  Identities=19%  Similarity=0.133  Sum_probs=112.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCccccc---------ccccccc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR---------TITTAYY   85 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~   85 (216)
                      ..|+++|.||+|||||+|+|++.... .+..|+.+.+..+....+.+  ..+.++||+|.+...         ......+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            57999999999999999999998765 66778999999999999988  558899999966322         2234456


Q ss_pred             ccccEEEEEEeCCCHhH--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEecCC
Q 027949           86 RGAMGILLVYDVTDESS--FNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKT  162 (216)
Q Consensus        86 ~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  162 (216)
                      ..+|++|||+|+...-+  -..+.+++   . .  .+.|+++|+||+|-..      .+....-...+| ..++.+||.+
T Consensus        82 ~eADvilfvVD~~~Git~~D~~ia~~L---r-~--~~kpviLvvNK~D~~~------~e~~~~efyslG~g~~~~ISA~H  149 (444)
T COG1160          82 EEADVILFVVDGREGITPADEEIAKIL---R-R--SKKPVILVVNKIDNLK------AEELAYEFYSLGFGEPVPISAEH  149 (444)
T ss_pred             HhCCEEEEEEeCCCCCCHHHHHHHHHH---H-h--cCCCEEEEEEcccCch------hhhhHHHHHhcCCCCceEeehhh
Confidence            78999999999976332  12222232   2 2  2689999999999421      122222233445 4899999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 027949          163 NLNVEEVFFSIARDIK  178 (216)
Q Consensus       163 ~~gi~~l~~~l~~~i~  178 (216)
                      |.|+++|++++++.+.
T Consensus       150 g~Gi~dLld~v~~~l~  165 (444)
T COG1160         150 GRGIGDLLDAVLELLP  165 (444)
T ss_pred             ccCHHHHHHHHHhhcC
Confidence            9999999999999974

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.83  E-value=1.2e-19  Score=158.82  Aligned_cols=158  Identities=22%  Similarity=0.251  Sum_probs=111.5

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCccc----------cccc-c
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTI-T   81 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~-~   81 (216)
                      ..++|+++|.+|+|||||+++|++.+.. ....++++.+.....+.+++  ..+.+|||||...          +..+ .
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~--~~~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDG--EDWLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECC--CEEEEEECCCcccCcccchhHHHHHHHHH
Confidence            3589999999999999999999998742 33445556666666677777  4567999999532          1111 1


Q ss_pred             ccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHH-HHh----CCeEE
Q 027949           82 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALA-DEY----GIKFF  156 (216)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~----~~~~~  156 (216)
                      ...++.+|++++|+|+++..+..... ++..+..   .+.|+++|+||+|+.+...   .+...... ...    ..+++
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~~~---~~~~~~~~~~~l~~~~~~~ii  599 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDEFR---RQRLERLWKTEFDRVTWARRV  599 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCChhH---HHHHHHHHHHhccCCCCCCEE
Confidence            23467899999999999887766654 3333332   3689999999999864211   12222211 111    25789


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHH
Q 027949          157 ETSAKTNLNVEEVFFSIARDIKQR  180 (216)
Q Consensus       157 ~~Sa~~~~gi~~l~~~l~~~i~~~  180 (216)
                      ++||++|.|++++++.+.+.+.+.
T Consensus       600 ~iSAktg~gv~~L~~~i~~~~~~~  623 (712)
T PRK09518        600 NLSAKTGWHTNRLAPAMQEALESW  623 (712)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999999887754

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.82  E-value=8e-19  Score=124.92  Aligned_cols=158  Identities=21%  Similarity=0.316  Sum_probs=119.1

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCc-------cccc---eeeeEEEEEEEECCeEEEEEEEeCCCcccccccc
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTS-------FITT---IGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT   81 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~-------~~~~---~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~   81 (216)
                      .....||+|.|+.++|||||++++........       ....   .+.-.....+..++. ..+.+++|||+++|+.+|
T Consensus         7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~-~~v~LfgtPGq~RF~fm~   85 (187)
T COG2229           7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDED-TGVHLFGTPGQERFKFMW   85 (187)
T ss_pred             cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCc-ceEEEecCCCcHHHHHHH
Confidence            34568999999999999999999998764111       1111   222233333333332 478899999999999999


Q ss_pred             ccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh--CCeEEEEe
Q 027949           82 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEY--GIKFFETS  159 (216)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~S  159 (216)
                      ..+.+.+.++|+++|.+++..+ +....+..+....+  .|++|.+||.||.+   ....+.++++....  .+++++.+
T Consensus        86 ~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~--ip~vVa~NK~DL~~---a~ppe~i~e~l~~~~~~~~vi~~~  159 (187)
T COG2229          86 EILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP--IPVVVAINKQDLFD---ALPPEKIREALKLELLSVPVIEID  159 (187)
T ss_pred             HHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC--CCEEEEeeccccCC---CCCHHHHHHHHHhccCCCceeeee
Confidence            9999999999999999999888 55555555544432  89999999999965   34566666666544  78999999


Q ss_pred             cCCCCCHHHHHHHHHHH
Q 027949          160 AKTNLNVEEVFFSIARD  176 (216)
Q Consensus       160 a~~~~gi~~l~~~l~~~  176 (216)
                      |+++++..+.++.+...
T Consensus       160 a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         160 ATEGEGARDQLDVLLLK  176 (187)
T ss_pred             cccchhHHHHHHHHHhh
Confidence            99999999988887765

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.82  E-value=1.1e-18  Score=133.51  Aligned_cols=151  Identities=23%  Similarity=0.211  Sum_probs=104.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccc-------ccccccccccc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------TITTAYYRGAM   89 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d   89 (216)
                      +|+++|.+|+|||||+++|.+........+..+.+.....+.+++  ..+.+||+||..+..       ......++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            789999999999999999998764433334445556667777777  688999999974322       12345678999


Q ss_pred             EEEEEEeCCCHhH-HHHHHHHHHH-----------------------------------------HHHh-----------
Q 027949           90 GILLVYDVTDESS-FNNIRNWIRN-----------------------------------------IEQH-----------  116 (216)
Q Consensus        90 ~~i~v~d~~~~~~-~~~~~~~~~~-----------------------------------------~~~~-----------  116 (216)
                      ++++|+|+++++. ...+...+..                                         +.++           
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~  159 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE  159 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence            9999999987652 2222222211                                         0000           


Q ss_pred             -----------c--CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Q 027949          117 -----------A--SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI  177 (216)
Q Consensus       117 -----------~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  177 (216)
                                 .  ....|+++|+||+|+.+      .+++..++..  ..++++||++|.|++++|+.|.+.+
T Consensus       160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~------~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS------IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CCCHHHHHHHHhCCceEeeEEEEEECccCCC------HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                       0  01368999999999843      2334444432  4689999999999999999988754

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.82  E-value=1.3e-18  Score=119.74  Aligned_cols=169  Identities=27%  Similarity=0.410  Sum_probs=134.4

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCC--CccccceeeeEEEEEEEE-CCeEEEEEEEeCCCcccc-cccccccccccc
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFT--TSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERF-RTITTAYYRGAM   89 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~-~~~~~~~~~~~d   89 (216)
                      ...||+|+|..++|||+++++++-.+..  .+..+|.. +.+...++. ++..-.+.|+||.|.... ..+...++.-+|
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD   86 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD   86 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence            3479999999999999999998765433  33445443 344444443 454567899999998766 557788889999


Q ss_pred             EEEEEEeCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHH
Q 027949           90 GILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE  168 (216)
Q Consensus        90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (216)
                      ++++||+..++++|..+..+...|..... ...|+++++||+|+.+ ......+.+..++....+..+++++.+...+-+
T Consensus        87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~-p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~e  165 (198)
T KOG3883|consen   87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAE-PREVDMDVAQIWAKREKVKLWEVTAMDRPSLYE  165 (198)
T ss_pred             eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhccc-chhcCHHHHHHHHhhhheeEEEEEeccchhhhh
Confidence            99999999999999998877777765433 4699999999999864 567888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcc
Q 027949          169 VFFSIARDIKQRLADT  184 (216)
Q Consensus       169 l~~~l~~~i~~~~~~~  184 (216)
                      -|.++...+.+-+.++
T Consensus       166 pf~~l~~rl~~pqskS  181 (198)
T KOG3883|consen  166 PFTYLASRLHQPQSKS  181 (198)
T ss_pred             HHHHHHHhccCCcccc
Confidence            9999988776655443

>COG1159 Era GTPase [General function prediction only]

Probab=99.82  E-value=4.4e-19  Score=135.77  Aligned_cols=159  Identities=18%  Similarity=0.108  Sum_probs=106.9

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccc-cceeeeEEEEEEEECCeEEEEEEEeCCCcccccc--------ccccc
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFI-TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------ITTAY   84 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~   84 (216)
                      ..--|+++|.||+|||||+|++.+....-.+. +.++.......++.++  .++.++||||...-..        .....
T Consensus         5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~--~QiIfvDTPGih~pk~~l~~~m~~~a~~s   82 (298)
T COG1159           5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDN--AQIIFVDTPGIHKPKHALGELMNKAARSA   82 (298)
T ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCC--ceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence            45679999999999999999999998764333 3333333334444443  7899999999654322        23445


Q ss_pred             cccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEecCCC
Q 027949           85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTN  163 (216)
Q Consensus        85 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~  163 (216)
                      +..+|+++||+|+.++-.. .....+..+..   .+.|+++++||+|..+.... .......+..... ..++++||++|
T Consensus        83 l~dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~-l~~~~~~~~~~~~f~~ivpiSA~~g  157 (298)
T COG1159          83 LKDVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTV-LLKLIAFLKKLLPFKEIVPISALKG  157 (298)
T ss_pred             hccCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHH-HHHHHHHHHhhCCcceEEEeecccc
Confidence            6789999999999874322 11122233332   25799999999997653221 1222222222333 48999999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q 027949          164 LNVEEVFFSIARDIKQ  179 (216)
Q Consensus       164 ~gi~~l~~~l~~~i~~  179 (216)
                      .|++.|.+.+..++.+
T Consensus       158 ~n~~~L~~~i~~~Lpe  173 (298)
T COG1159         158 DNVDTLLEIIKEYLPE  173 (298)
T ss_pred             CCHHHHHHHHHHhCCC
Confidence            9999999988877654

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.82  E-value=2.4e-19  Score=148.87  Aligned_cols=154  Identities=20%  Similarity=0.130  Sum_probs=104.9

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcC--CCC-----------------------------CccccceeeeEEEEEEEECC
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDG--SFT-----------------------------TSFITTIGIDFKIRTIELDG   61 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~~   61 (216)
                      ...++|+++|..++|||||+++|+..  .+.                             .+...+.+.+.....+..++
T Consensus         5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~   84 (426)
T TIGR00483         5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK   84 (426)
T ss_pred             CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence            45599999999999999999999852  111                             11233555555555555555


Q ss_pred             eEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHH--HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-
Q 027949           62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNN--IRNWIRNIEQHASDNVNKILVGNKADMDESKRA-  138 (216)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-  138 (216)
                        +.+.|||+||++.|.......+..+|++|+|+|+++.++...  ....+ .+..... ..|++||+||+|+.+.... 
T Consensus        85 --~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~-~~~~~~~-~~~iIVviNK~Dl~~~~~~~  160 (426)
T TIGR00483        85 --YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHA-FLARTLG-INQLIVAINKMDSVNYDEEE  160 (426)
T ss_pred             --eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHH-HHHHHcC-CCeEEEEEEChhccCccHHH
Confidence              789999999998876656666789999999999998743211  11111 1222221 3578899999998642111 


Q ss_pred             --cChHHHHHHHHHhC-----CeEEEEecCCCCCHHHHH
Q 027949          139 --VPTSKGQALADEYG-----IKFFETSAKTNLNVEEVF  170 (216)
Q Consensus       139 --~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~  170 (216)
                        ...+++..++...+     ++++++||++|.|+++.+
T Consensus       161 ~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       161 FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             HHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence              12345566666555     689999999999998754

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.81  E-value=6.4e-19  Score=142.28  Aligned_cols=152  Identities=23%  Similarity=0.232  Sum_probs=116.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccc--------ccccc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT--------TAYYR   86 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~~~   86 (216)
                      ++++++|.||+|||||+|.|++.+.. ....++++.+.....+..+|  +.+.++||+|..+.....        ...+.
T Consensus       218 ~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~  295 (454)
T COG0486         218 LKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKAIE  295 (454)
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHHHH
Confidence            89999999999999999999998765 66778888899999999999  889999999976544432        33457


Q ss_pred             cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCH
Q 027949           87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV  166 (216)
Q Consensus        87 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  166 (216)
                      ++|.++||+|.+.+.+-.... .    ......+.|+++|.||.||......      ..+....+.+++.+|+++|+|+
T Consensus       296 ~ADlvL~v~D~~~~~~~~d~~-~----~~~~~~~~~~i~v~NK~DL~~~~~~------~~~~~~~~~~~i~iSa~t~~Gl  364 (454)
T COG0486         296 EADLVLFVLDASQPLDKEDLA-L----IELLPKKKPIIVVLNKADLVSKIEL------ESEKLANGDAIISISAKTGEGL  364 (454)
T ss_pred             hCCEEEEEEeCCCCCchhhHH-H----HHhcccCCCEEEEEechhccccccc------chhhccCCCceEEEEecCccCH
Confidence            899999999999862212211 1    1133457899999999999653221      1111223347899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027949          167 EEVFFSIARDIKQR  180 (216)
Q Consensus       167 ~~l~~~l~~~i~~~  180 (216)
                      +.+.+.|.+.+...
T Consensus       365 ~~L~~~i~~~~~~~  378 (454)
T COG0486         365 DALREAIKQLFGKG  378 (454)
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999999888777

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.81  E-value=8.9e-19  Score=149.01  Aligned_cols=157  Identities=18%  Similarity=0.174  Sum_probs=103.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEEC----------------CeEEEEEEEeCCCcccccc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD----------------GKRIKLQIWDTAGQERFRT   79 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~G~~~~~~   79 (216)
                      .-|+++|.+++|||||+++|.+..+......+.+.+.....+..+                .....+.+|||||++.|..
T Consensus         5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~   84 (590)
T TIGR00491         5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN   84 (590)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence            468999999999999999999887654332222211111111111                0012388999999999998


Q ss_pred             ccccccccccEEEEEEeCCC---HhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc-----------ChHH--
Q 027949           80 ITTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAV-----------PTSK--  143 (216)
Q Consensus        80 ~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-----------~~~~--  143 (216)
                      ++..+++.+|++++|+|+++   +.++..+.    .+..   .+.|+++++||+|+.+.....           ....  
T Consensus        85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~  157 (590)
T TIGR00491        85 LRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQ  157 (590)
T ss_pred             HHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHH
Confidence            88888999999999999987   44444332    1221   268999999999985321000           0000  


Q ss_pred             ----------HHHHHH------------Hh--CCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 027949          144 ----------GQALAD------------EY--GIKFFETSAKTNLNVEEVFFSIARDIKQ  179 (216)
Q Consensus       144 ----------~~~~~~------------~~--~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  179 (216)
                                ...+..            ..  .++++++||++|+|+++++.+|......
T Consensus       158 ~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~  217 (590)
T TIGR00491       158 QNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQ  217 (590)
T ss_pred             HHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHH
Confidence                      001110            11  2689999999999999999998765443

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.81  E-value=3.3e-19  Score=124.10  Aligned_cols=135  Identities=25%  Similarity=0.297  Sum_probs=96.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcc----ccccccccccccccEEE
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----RFRTITTAYYRGAMGIL   92 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~~~d~~i   92 (216)
                      ||+|+|+.|||||||+++|.+.+..  +..|....       +.+     .++||||--    .+.........++|+++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~~--~~KTq~i~-------~~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~   68 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEIR--YKKTQAIE-------YYD-----NTIDTPGEYIENPRFYHALIVTAQDADVVL   68 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCCC--cCccceeE-------ecc-----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence            7999999999999999999987653  33332221       222     246999942    23333333446899999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEecCCCCCHHHHHH
Q 027949           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVEEVFF  171 (216)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~  171 (216)
                      ++.|++++.+.-.     ..+....  +.|++=|+||+|+..  .....+.++++.+..|+ .+|.+|+.+|+|+++|.+
T Consensus        69 ll~dat~~~~~~p-----P~fa~~f--~~pvIGVITK~Dl~~--~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~  139 (143)
T PF10662_consen   69 LLQDATEPRSVFP-----PGFASMF--NKPVIGVITKIDLPS--DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKD  139 (143)
T ss_pred             EEecCCCCCccCC-----chhhccc--CCCEEEEEECccCcc--chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHH
Confidence            9999998753211     1122222  589999999999863  23466778888888886 789999999999999999


Q ss_pred             HHH
Q 027949          172 SIA  174 (216)
Q Consensus       172 ~l~  174 (216)
                      +|.
T Consensus       140 ~L~  142 (143)
T PF10662_consen  140 YLE  142 (143)
T ss_pred             HHh
Confidence            874

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.81  E-value=5.2e-19  Score=146.84  Aligned_cols=154  Identities=21%  Similarity=0.149  Sum_probs=102.5

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCC-------------------------------CccccceeeeEEEEEEEECC
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFT-------------------------------TSFITTIGIDFKIRTIELDG   61 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   61 (216)
                      ...++|+++|.+++|||||+++|+...-.                               .+..++.+.+.....+..++
T Consensus         4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~   83 (425)
T PRK12317          4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK   83 (425)
T ss_pred             CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence            35599999999999999999999843211                               12245555566555565555


Q ss_pred             eEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHH-HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC---
Q 027949           62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF-NNIRNWIRNIEQHASDNVNKILVGNKADMDESKR---  137 (216)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---  137 (216)
                        +.+.+|||||++.|.......+..+|++|+|+|++++..+ ......+..+... . ..|+++++||+|+.+...   
T Consensus        84 --~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~-~~~iivviNK~Dl~~~~~~~~  159 (425)
T PRK12317         84 --YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-G-INQLIVAINKMDAVNYDEKRY  159 (425)
T ss_pred             --eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-C-CCeEEEEEEccccccccHHHH
Confidence              7899999999987765555556789999999999873111 1111222222222 1 246899999999864211   


Q ss_pred             ccChHHHHHHHHHhC-----CeEEEEecCCCCCHHHHH
Q 027949          138 AVPTSKGQALADEYG-----IKFFETSAKTNLNVEEVF  170 (216)
Q Consensus       138 ~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~  170 (216)
                      ....+++..++...+     ++++++||++|+|+++++
T Consensus       160 ~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        160 EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             HHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence            112244555555554     579999999999998854

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.81  E-value=3.7e-18  Score=137.57  Aligned_cols=163  Identities=26%  Similarity=0.206  Sum_probs=116.8

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccc-----------c
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-----------T   81 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~   81 (216)
                      ..++|+|+|.||+|||||+|+|++.+.. ....++++.+.....+++++  ..+.++||+|...-...           .
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~--~~~~liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG--RKYVLIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC--eEEEEEECCCCCcccccccceEEEeehhh
Confidence            4699999999999999999999998753 56677888888888888888  56788999994321111           2


Q ss_pred             ccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHH-HHHHHh---C-CeEE
Q 027949           82 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQ-ALADEY---G-IKFF  156 (216)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~~~~~~---~-~~~~  156 (216)
                      ...+..+|++++|+|++.+-+..+. .....+.+   .+.++++|+||+|+.+... ...++.+ .+-..+   + .+++
T Consensus       255 ~~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~~---~g~~~vIvvNKWDl~~~~~-~~~~~~k~~i~~~l~~l~~a~i~  329 (444)
T COG1160         255 LKAIERADVVLLVIDATEGISEQDL-RIAGLIEE---AGRGIVIVVNKWDLVEEDE-ATMEEFKKKLRRKLPFLDFAPIV  329 (444)
T ss_pred             HhHHhhcCEEEEEEECCCCchHHHH-HHHHHHHH---cCCCeEEEEEccccCCchh-hHHHHHHHHHHHHhccccCCeEE
Confidence            2345679999999999987654443 22222332   3789999999999865321 2222222 222222   2 6999


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHhhc
Q 027949          157 ETSAKTNLNVEEVFFSIARDIKQRLAD  183 (216)
Q Consensus       157 ~~Sa~~~~gi~~l~~~l~~~i~~~~~~  183 (216)
                      .+||.+|.|+.++|+++.+........
T Consensus       330 ~iSA~~~~~i~~l~~~i~~~~~~~~~r  356 (444)
T COG1160         330 FISALTGQGLDKLFEAIKEIYECATRR  356 (444)
T ss_pred             EEEecCCCChHHHHHHHHHHHHHhccc
Confidence            999999999999999988877665443

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.80  E-value=1.1e-18  Score=126.75  Aligned_cols=151  Identities=17%  Similarity=0.226  Sum_probs=97.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccc----------cccccccccc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTITTAYYR   86 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~~   86 (216)
                      .|+++|.+|+|||||++.+.+........++.+.......+..++   .+.+||+||...          +......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            379999999999999999996555444444444334444444444   788999999432          2333333433


Q ss_pred             ---cccEEEEEEeCCCHhH--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cChHHHHHHHH--HhCCeEEEE
Q 027949           87 ---GAMGILLVYDVTDESS--FNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA-VPTSKGQALAD--EYGIKFFET  158 (216)
Q Consensus        87 ---~~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~--~~~~~~~~~  158 (216)
                         ..+++++++|..+...  ...+..|+...      +.|+++|+||+|+...... ...........  ....+++++
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  151 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF  151 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence               4578899999876532  22233343322      5799999999998532211 11122222222  233689999


Q ss_pred             ecCCCCCHHHHHHHHHHH
Q 027949          159 SAKTNLNVEEVFFSIARD  176 (216)
Q Consensus       159 Sa~~~~gi~~l~~~l~~~  176 (216)
                      |++++.|+++++++|.+.
T Consensus       152 Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         152 SSLKGQGIDELRALIEKW  169 (170)
T ss_pred             ecCCCCCHHHHHHHHHHh
Confidence            999999999999999875

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.80  E-value=1.9e-18  Score=132.08  Aligned_cols=178  Identities=17%  Similarity=0.163  Sum_probs=116.1

Q ss_pred             ccccCCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEE-EEEECCeEEEEEEEeCCCccc-------
Q 027949            5 PARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIR-TIELDGKRIKLQIWDTAGQER-------   76 (216)
Q Consensus         5 ~~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~-------   76 (216)
                      +.+.+++..+.+.|+|+|+||+|||||.|.+.+..+........++..... .++.+.  .++.|+||||.-.       
T Consensus        62 esrde~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~e--TQlvf~DTPGlvs~~~~r~~  139 (379)
T KOG1423|consen   62 ESRDEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGE--TQLVFYDTPGLVSKKMHRRH  139 (379)
T ss_pred             cCCCchhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCc--eEEEEecCCcccccchhhhH
Confidence            445666778899999999999999999999999998765555444443333 333333  7999999999321       


Q ss_pred             -----cccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC------------cc
Q 027949           77 -----FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR------------AV  139 (216)
Q Consensus        77 -----~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~------------~~  139 (216)
                           +.......+..+|.+++++|++++.....- ..+..+..+.  ..|-++|+||.|......            ..
T Consensus       140 ~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p-~vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l  216 (379)
T KOG1423|consen  140 HLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHP-RVLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGEL  216 (379)
T ss_pred             HHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccCh-HHHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhcccccc
Confidence                 111223345679999999999964322211 1233344443  678899999999633111            11


Q ss_pred             C---hHHHHHHHH---------HhCC----eEEEEecCCCCCHHHHHHHHHHHHHHHhhcccCC
Q 027949          140 P---TSKGQALAD---------EYGI----KFFETSAKTNLNVEEVFFSIARDIKQRLADTDSR  187 (216)
Q Consensus       140 ~---~~~~~~~~~---------~~~~----~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~~~  187 (216)
                      .   .+...+|..         ..|+    .+|.+||++|+|++++.+||........++-+..
T Consensus       217 ~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~  280 (379)
T KOG1423|consen  217 AKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPAD  280 (379)
T ss_pred             chhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcc
Confidence            1   111112211         1122    4899999999999999999998777665554443

>PRK10218 GTP-binding protein; Provisional

Probab=99.80  E-value=3.4e-18  Score=145.94  Aligned_cols=159  Identities=19%  Similarity=0.187  Sum_probs=109.4

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcC--CCCCc--------------cccceeeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDG--SFTTS--------------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF   77 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~--~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   77 (216)
                      ..-+|+|+|..++|||||+++|+..  .+...              ...+.+.......+.+++  +.+.+|||||+..|
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~--~~inliDTPG~~df   81 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWND--YRINIVDTPGHADF   81 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCC--EEEEEEECCCcchh
Confidence            3468999999999999999999862  22211              112233333333444444  88999999999999


Q ss_pred             ccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH-------
Q 027949           78 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADE-------  150 (216)
Q Consensus        78 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-------  150 (216)
                      ...+..+++.+|++|+|+|+.+..... ...++..+..   .+.|.++++||+|+.++......+++..+...       
T Consensus        82 ~~~v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~  157 (607)
T PRK10218         82 GGEVERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQ  157 (607)
T ss_pred             HHHHHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccc
Confidence            988999999999999999998753222 2233333322   26899999999998654333333444444322       


Q ss_pred             hCCeEEEEecCCCC----------CHHHHHHHHHHHHH
Q 027949          151 YGIKFFETSAKTNL----------NVEEVFFSIARDIK  178 (216)
Q Consensus       151 ~~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~  178 (216)
                      ..++++.+||.+|.          |+..|++.|++.+.
T Consensus       158 ~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP  195 (607)
T PRK10218        158 LDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP  195 (607)
T ss_pred             cCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence            34789999999997          57777777766654

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.79  E-value=2e-18  Score=147.41  Aligned_cols=156  Identities=21%  Similarity=0.259  Sum_probs=111.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC--CCCC--------------ccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG--SFTT--------------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI   80 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~--~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   80 (216)
                      +|+|+|..++|||||+++|+..  .+..              +...+.+.......+.+++  +.+.||||||+..|...
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~--~kinlIDTPGh~DF~~e   80 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNG--TKINIVDTPGHADFGGE   80 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECC--EEEEEEECCCHHHHHHH
Confidence            6899999999999999999863  2211              1123344444455566766  78999999999999888


Q ss_pred             cccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-------HhCC
Q 027949           81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALAD-------EYGI  153 (216)
Q Consensus        81 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~  153 (216)
                      +..+++.+|++++|+|+.+.. ......|+..+...   +.|+++|+||+|+.++......+++..+..       ...+
T Consensus        81 v~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~  156 (594)
T TIGR01394        81 VERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL---GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF  156 (594)
T ss_pred             HHHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC---CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence            888999999999999998642 23444555555443   689999999999865322212233333332       2346


Q ss_pred             eEEEEecCCCC----------CHHHHHHHHHHHHH
Q 027949          154 KFFETSAKTNL----------NVEEVFFSIARDIK  178 (216)
Q Consensus       154 ~~~~~Sa~~~~----------gi~~l~~~l~~~i~  178 (216)
                      +++.+||++|.          |++.+|+.|++.+.
T Consensus       157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP  191 (594)
T TIGR01394       157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP  191 (594)
T ss_pred             cEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence            89999999995          79999988887764

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.79  E-value=1.3e-18  Score=131.28  Aligned_cols=148  Identities=23%  Similarity=0.160  Sum_probs=96.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCC-C------------------------------ccccceeeeEEEEEEEECCeEEE
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFT-T------------------------------SFITTIGIDFKIRTIELDGKRIK   65 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~-~------------------------------~~~~~~~~~~~~~~~~~~~~~~~   65 (216)
                      +|+|+|.+|+|||||+++|+...-. .                              +..++.+.+.....+.+++  ..
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~   78 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK   78 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence            5899999999999999999764311 1                              1113344455555555555  57


Q ss_pred             EEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc---cChH
Q 027949           66 LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA---VPTS  142 (216)
Q Consensus        66 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~  142 (216)
                      +.+|||||+..+.......++.+|++|+|+|++++..-.. ......+... . ..++++|+||+|+.+....   ....
T Consensus        79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~~-~-~~~iIvviNK~D~~~~~~~~~~~i~~  155 (208)
T cd04166          79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSLL-G-IRHVVVAVNKMDLVDYSEEVFEEIVA  155 (208)
T ss_pred             EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHHc-C-CCcEEEEEEchhcccCCHHHHHHHHH
Confidence            8899999998776555666789999999999987532111 1111222221 1 2457778999998542111   1123


Q ss_pred             HHHHHHHHhC---CeEEEEecCCCCCHHHH
Q 027949          143 KGQALADEYG---IKFFETSAKTNLNVEEV  169 (216)
Q Consensus       143 ~~~~~~~~~~---~~~~~~Sa~~~~gi~~l  169 (216)
                      ++..+...++   .+++++||++|.|+++.
T Consensus       156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         156 DYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            4445555555   45999999999998753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>COG2262 HflX GTPases [General function prediction only]

Probab=99.79  E-value=4.1e-18  Score=135.42  Aligned_cols=170  Identities=21%  Similarity=0.159  Sum_probs=127.1

Q ss_pred             CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcc---------ccccc
Q 027949           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE---------RFRTI   80 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~   80 (216)
                      ........|.++|..|+|||||+|.|++........-+.+.+...+.+.+.+ ...+.+-||.|.-         .|.+ 
T Consensus       187 R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFks-  264 (411)
T COG2262         187 RSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKS-  264 (411)
T ss_pred             hcccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHH-
Confidence            3445678999999999999999999998887766667777888888888875 2567888999942         1222 


Q ss_pred             cccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEec
Q 027949           81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSA  160 (216)
Q Consensus        81 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (216)
                      ...-...+|+++.|+|+++|.....+......+.+......|+++|.||+|+.....     ....+..... ..+.+||
T Consensus       265 TLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~-~~v~iSA  338 (411)
T COG2262         265 TLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-----ILAELERGSP-NPVFISA  338 (411)
T ss_pred             HHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-----hhhhhhhcCC-CeEEEEe
Confidence            222346799999999999998777777777777776556799999999999654221     1111111112 5899999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhcccCC
Q 027949          161 KTNLNVEEVFFSIARDIKQRLADTDSR  187 (216)
Q Consensus       161 ~~~~gi~~l~~~l~~~i~~~~~~~~~~  187 (216)
                      ++|+|++.|+..|.+.+........-.
T Consensus       339 ~~~~gl~~L~~~i~~~l~~~~~~~~l~  365 (411)
T COG2262         339 KTGEGLDLLRERIIELLSGLRTEVTLE  365 (411)
T ss_pred             ccCcCHHHHHHHHHHHhhhcccceEEE
Confidence            999999999999999888665554433

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.78  E-value=1.2e-17  Score=128.11  Aligned_cols=112  Identities=19%  Similarity=0.177  Sum_probs=80.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCC--------C----------ccccceeeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFT--------T----------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR   78 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~--------~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   78 (216)
                      +|+++|..|+|||||+++|+...-.        .          +.....+.......+.+++  ..+.+|||||+..|.
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~--~~i~liDTPG~~~f~   78 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWED--TKVNLIDTPGHMDFI   78 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECC--EEEEEEeCCCccchH
Confidence            4899999999999999999763211        0          1112222334445555665  789999999999888


Q ss_pred             cccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949           79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE  134 (216)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (216)
                      ..+...++.+|++++|+|+.+.... ....++..+...   +.|+++++||+|+.+
T Consensus        79 ~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---~~P~iivvNK~D~~~  130 (237)
T cd04168          79 AEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---NIPTIIFVNKIDRAG  130 (237)
T ss_pred             HHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---CCCEEEEEECccccC
Confidence            8888889999999999999876432 334444444332   689999999999854

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.78  E-value=2.4e-18  Score=141.81  Aligned_cols=163  Identities=17%  Similarity=0.159  Sum_probs=103.5

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCC---ccccceeeeEEEEEE--------------EE----CC------eEEEE
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTT---SFITTIGIDFKIRTI--------------EL----DG------KRIKL   66 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~--------------~~----~~------~~~~~   66 (216)
                      ..++|+++|..++|||||+++|.+.....   +.....+.......+              +.    ++      ....+
T Consensus         3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   82 (406)
T TIGR03680         3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV   82 (406)
T ss_pred             ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence            45899999999999999999997643221   111111111111100              01    11      13578


Q ss_pred             EEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cChHHHH
Q 027949           67 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA-VPTSKGQ  145 (216)
Q Consensus        67 ~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~  145 (216)
                      .+||+||++.|...+......+|++++|+|++++.........+..+....  ..|+++++||+|+.+.... ...+++.
T Consensus        83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~g--i~~iIVvvNK~Dl~~~~~~~~~~~~i~  160 (406)
T TIGR03680        83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIG--IKNIVIVQNKIDLVSKEKALENYEEIK  160 (406)
T ss_pred             EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcC--CCeEEEEEEccccCCHHHHHHHHHHHH
Confidence            999999999887777777778999999999986431112222222222221  3568999999998642211 1123334


Q ss_pred             HHHHHh---CCeEEEEecCCCCCHHHHHHHHHHHHH
Q 027949          146 ALADEY---GIKFFETSAKTNLNVEEVFFSIARDIK  178 (216)
Q Consensus       146 ~~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~i~  178 (216)
                      .+....   +++++++||++|+|+++++++|...+.
T Consensus       161 ~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       161 EFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             hhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            444332   578999999999999999999987653

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.78  E-value=7.2e-18  Score=141.64  Aligned_cols=155  Identities=18%  Similarity=0.220  Sum_probs=120.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc------cccccc--cc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------ITTAYY--RG   87 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--~~   87 (216)
                      .+|+++|+||+|||||+|+|++.+....+.|+.+.+.....+.+.+  .++++.|+||..+...      ..++|+  ..
T Consensus         4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~--~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~   81 (653)
T COG0370           4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKG--HEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK   81 (653)
T ss_pred             ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecC--ceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence            6799999999999999999999998888899999999999999988  4588899999543322      223333  35


Q ss_pred             ccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHH
Q 027949           88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE  167 (216)
Q Consensus        88 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  167 (216)
                      .|++|-|+|+++.+.--.+-  + ++.+.   +.|++++.|++|..  ++.-..-+...+.+.+|+++++++|++|+|++
T Consensus        82 ~D~ivnVvDAtnLeRnLylt--l-QLlE~---g~p~ilaLNm~D~A--~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~  153 (653)
T COG0370          82 PDLIVNVVDATNLERNLYLT--L-QLLEL---GIPMILALNMIDEA--KKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLE  153 (653)
T ss_pred             CCEEEEEcccchHHHHHHHH--H-HHHHc---CCCeEEEeccHhhH--HhcCCcccHHHHHHHhCCCEEEEEeecCCCHH
Confidence            69999999999876322221  1 22222   78999999999973  34444556777889999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027949          168 EVFFSIARDIKQR  180 (216)
Q Consensus       168 ~l~~~l~~~i~~~  180 (216)
                      ++...+.+....+
T Consensus       154 ~l~~~i~~~~~~~  166 (653)
T COG0370         154 ELKRAIIELAESK  166 (653)
T ss_pred             HHHHHHHHhcccc
Confidence            9999988655444

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.78  E-value=1.4e-18  Score=132.14  Aligned_cols=147  Identities=18%  Similarity=0.106  Sum_probs=94.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC-------------------------------CCccccceeeeEEEEEEEECCeEEE
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSF-------------------------------TTSFITTIGIDFKIRTIELDGKRIK   65 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~   65 (216)
                      +|+++|..++|||||+.+|+...-                               ..+...+.+.+.....+.+.+  ..
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~   78 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR   78 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence            489999999999999999864210                               011223344455555566666  78


Q ss_pred             EEEEeCCCccccccccccccccccEEEEEEeCCCHhH------HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-C-
Q 027949           66 LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS------FNNIRNWIRNIEQHASDNVNKILVGNKADMDESK-R-  137 (216)
Q Consensus        66 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~-  137 (216)
                      +.+||+||+..+...+...++.+|++|+|+|+++...      .......+.... .. ...|+++|+||+|+.... . 
T Consensus        79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~iiivvNK~Dl~~~~~~~  156 (219)
T cd01883          79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLAR-TL-GVKQLIVAVNKMDDVTVNWSE  156 (219)
T ss_pred             EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHH-Hc-CCCeEEEEEEccccccccccH
Confidence            8999999987776666666788999999999988421      111222222222 22 136889999999986321 1 


Q ss_pred             ---ccChHHHHHHHHHhC-----CeEEEEecCCCCCHH
Q 027949          138 ---AVPTSKGQALADEYG-----IKFFETSAKTNLNVE  167 (216)
Q Consensus       138 ---~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~  167 (216)
                         ....+.+..+....+     ++++++||++|+|++
T Consensus       157 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         157 ERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence               111222333334433     679999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.77  E-value=4.7e-18  Score=140.07  Aligned_cols=165  Identities=15%  Similarity=0.177  Sum_probs=102.7

Q ss_pred             CCCceEEEEEEcCCCCcHHHHHHHHHcCCCC---CccccceeeeEEEEEEEE------------------C--C----eE
Q 027949           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFT---TSFITTIGIDFKIRTIEL------------------D--G----KR   63 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~------------------~--~----~~   63 (216)
                      .....++|+++|..++|||||+.+|.+....   .+...+.+.......+.+                  +  +    ..
T Consensus         5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (411)
T PRK04000          5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL   84 (411)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence            3455699999999999999999999764221   111222222221111111                  0  0    12


Q ss_pred             EEEEEEeCCCccccccccccccccccEEEEEEeCCCHh-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cCh
Q 027949           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA-VPT  141 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~  141 (216)
                      ..+.|||+||++.|..........+|++++|+|+.++. ..... ..+..+....  ..|+++|+||+|+.+.... ...
T Consensus        85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~-~~l~~l~~~~--i~~iiVVlNK~Dl~~~~~~~~~~  161 (411)
T PRK04000         85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTK-EHLMALDIIG--IKNIVIVQNKIDLVSKERALENY  161 (411)
T ss_pred             cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHH-HHHHHHHHcC--CCcEEEEEEeeccccchhHHHHH
Confidence            57899999999877655555556789999999998642 11111 1112222221  2468999999998642211 112


Q ss_pred             HHHHHHHHHh---CCeEEEEecCCCCCHHHHHHHHHHHHH
Q 027949          142 SKGQALADEY---GIKFFETSAKTNLNVEEVFFSIARDIK  178 (216)
Q Consensus       142 ~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~i~  178 (216)
                      +++..++...   +++++++||++|.|+++++++|.+.+.
T Consensus       162 ~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~  201 (411)
T PRK04000        162 EQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP  201 (411)
T ss_pred             HHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence            3344444332   478999999999999999999987653

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.76  E-value=1.7e-17  Score=142.41  Aligned_cols=154  Identities=21%  Similarity=0.207  Sum_probs=105.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC---CCccccceeeeEEEEEEEE-CCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSF---TTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      -|+++|..++|||||+++|++.+.   ..+...+.+.+.....+.. ++  ..+.+||+||++.|.......+..+|+++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g--~~i~~IDtPGhe~fi~~m~~g~~~~D~~l   79 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG--RVLGFIDVPGHEKFLSNMLAGVGGIDHAL   79 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC--cEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence            478999999999999999997432   2334445555544444433 33  45889999999988766666788899999


Q ss_pred             EEEeCCCH---hHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC-ccChHHHHHHHHHhC---CeEEEEecCCCC
Q 027949           93 LVYDVTDE---SSFNNIRNWIRNIEQHASDNVN-KILVGNKADMDESKR-AVPTSKGQALADEYG---IKFFETSAKTNL  164 (216)
Q Consensus        93 ~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~---~~~~~~Sa~~~~  164 (216)
                      +|+|+.+.   .+.+.+    ..+...   +.| ++||+||+|+.+... ....+++..+....+   .+++++||++|.
T Consensus        80 LVVda~eg~~~qT~ehl----~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~  152 (614)
T PRK10512         80 LVVACDDGVMAQTREHL----AILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGR  152 (614)
T ss_pred             EEEECCCCCcHHHHHHH----HHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCC
Confidence            99999873   333332    222222   455 578999999864211 112234444544444   689999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 027949          165 NVEEVFFSIARDIKQ  179 (216)
Q Consensus       165 gi~~l~~~l~~~i~~  179 (216)
                      |+++++++|.+....
T Consensus       153 gI~~L~~~L~~~~~~  167 (614)
T PRK10512        153 GIDALREHLLQLPER  167 (614)
T ss_pred             CCHHHHHHHHHhhcc
Confidence            999999999865433

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.76  E-value=8.5e-18  Score=129.13  Aligned_cols=157  Identities=20%  Similarity=0.283  Sum_probs=118.0

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccc----ccccccccc---c
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTAYY---R   86 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~~---~   86 (216)
                      ....|.++|.||+|||||+++|.+.....-..+.++..+...++.+++.. .+.+-|+||.-+    -+.+-..|+   .
T Consensus       195 siadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiE  273 (366)
T KOG1489|consen  195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIE  273 (366)
T ss_pred             eecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHH
Confidence            44568899999999999999999987665555566677778888777643 488999999543    223344454   4


Q ss_pred             cccEEEEEEeCCCH---hHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEec
Q 027949           87 GAMGILLVYDVTDE---SSFNNIRNWIRNIEQHAS--DNVNKILVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSA  160 (216)
Q Consensus        87 ~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa  160 (216)
                      .++.++||+|++.+   ..|+++..+..++..+..  ...|.++|+||+|+++++    ...+.++...+.- .++++||
T Consensus       274 R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae----~~~l~~L~~~lq~~~V~pvsA  349 (366)
T KOG1489|consen  274 RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE----KNLLSSLAKRLQNPHVVPVSA  349 (366)
T ss_pred             hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH----HHHHHHHHHHcCCCcEEEeee
Confidence            68999999999998   788888777666655432  468999999999985422    2234666666654 5999999


Q ss_pred             CCCCCHHHHHHHHHH
Q 027949          161 KTNLNVEEVFFSIAR  175 (216)
Q Consensus       161 ~~~~gi~~l~~~l~~  175 (216)
                      +.++|+.++++.|.+
T Consensus       350 ~~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  350 KSGEGLEELLNGLRE  364 (366)
T ss_pred             ccccchHHHHHHHhh
Confidence            999999999888765

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.76  E-value=2.3e-17  Score=140.85  Aligned_cols=155  Identities=18%  Similarity=0.202  Sum_probs=100.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEEC------CeEE----------EEEEEeCCCcccccc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD------GKRI----------KLQIWDTAGQERFRT   79 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~----------~~~i~D~~G~~~~~~   79 (216)
                      ..|+++|.+++|||||+++|.+..+........+.+.....+..+      +...          .+.+|||||++.|..
T Consensus         7 p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~~   86 (586)
T PRK04004          7 PIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTN   86 (586)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHHH
Confidence            579999999999999999998765443222222111111111110      1111          268999999999998


Q ss_pred             ccccccccccEEEEEEeCCC---HhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cC-----------h--H
Q 027949           80 ITTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA-VP-----------T--S  142 (216)
Q Consensus        80 ~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~-----------~--~  142 (216)
                      ++...+..+|++++|+|+++   +.++..+..    +..   .+.|+++++||+|+.+.... ..           .  .
T Consensus        87 ~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~  159 (586)
T PRK04004         87 LRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQ  159 (586)
T ss_pred             HHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHH
Confidence            88888889999999999987   555544422    222   36899999999998421100 00           0  0


Q ss_pred             --------HHHHHHHHh---------------CCeEEEEecCCCCCHHHHHHHHHHHH
Q 027949          143 --------KGQALADEY---------------GIKFFETSAKTNLNVEEVFFSIARDI  177 (216)
Q Consensus       143 --------~~~~~~~~~---------------~~~~~~~Sa~~~~gi~~l~~~l~~~i  177 (216)
                              +...+....               .++++++||.+|+|+++++..+....
T Consensus       160 ~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~  217 (586)
T PRK04004        160 QELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA  217 (586)
T ss_pred             HHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence                    011111111               26899999999999999998886544

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.76  E-value=3.2e-17  Score=122.09  Aligned_cols=147  Identities=20%  Similarity=0.163  Sum_probs=96.6

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCC----------------CCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR   78 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   78 (216)
                      .++|+++|..++|||||+++|+....                ..+..++.+.+.....+..++  ..+.++||||+..+.
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~--~~i~~iDtPG~~~~~   79 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETAN--RHYAHVDCPGHADYI   79 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCC--eEEEEEECcCHHHHH
Confidence            38999999999999999999986310                011133344444333444444  678899999998777


Q ss_pred             cccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCc--cChHHHHHHHHHhC---
Q 027949           79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KILVGNKADMDESKRA--VPTSKGQALADEYG---  152 (216)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~---  152 (216)
                      ......+..+|++++|+|+...-. ......+..+...   +.| +++++||+|+......  ...+++..+....+   
T Consensus        80 ~~~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~  155 (195)
T cd01884          80 KNMITGAAQMDGAILVVSATDGPM-PQTREHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG  155 (195)
T ss_pred             HHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence            666777788999999999976432 2222233333332   566 7788999998532211  12234555555443   


Q ss_pred             --CeEEEEecCCCCCHH
Q 027949          153 --IKFFETSAKTNLNVE  167 (216)
Q Consensus       153 --~~~~~~Sa~~~~gi~  167 (216)
                        ++++++||.+|.++.
T Consensus       156 ~~v~iipiSa~~g~n~~  172 (195)
T cd01884         156 DNTPIVRGSALKALEGD  172 (195)
T ss_pred             cCCeEEEeeCccccCCC
Confidence              689999999998863

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.75  E-value=3.6e-17  Score=118.97  Aligned_cols=159  Identities=21%  Similarity=0.248  Sum_probs=106.9

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCC----------cccccccc
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QERFRTIT   81 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~   81 (216)
                      .+....|+++|.+|+|||||||+|+++....-...+.|.+.....+.+++.   +.++|.||          .+.+..+.
T Consensus        21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i   97 (200)
T COG0218          21 EDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLI   97 (200)
T ss_pred             CCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHH
Confidence            345578999999999999999999997743333344455567777777773   77899999          33455555


Q ss_pred             ccccc---cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh----CCe
Q 027949           82 TAYYR---GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEY----GIK  154 (216)
Q Consensus        82 ~~~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~  154 (216)
                      ..|+.   +..++++++|+..+..-.+. +++..+...   +.|++|++||+|-...  ......+...+...    .+.
T Consensus        98 ~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~~---~i~~~vv~tK~DKi~~--~~~~k~l~~v~~~l~~~~~~~  171 (200)
T COG0218          98 EEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLEL---GIPVIVVLTKADKLKK--SERNKQLNKVAEELKKPPPDD  171 (200)
T ss_pred             HHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHHc---CCCeEEEEEccccCCh--hHHHHHHHHHHHHhcCCCCcc
Confidence            66654   35678889999776443222 223333332   7999999999996431  11112222333222    233


Q ss_pred             --EEEEecCCCCCHHHHHHHHHHHHHH
Q 027949          155 --FFETSAKTNLNVEEVFFSIARDIKQ  179 (216)
Q Consensus       155 --~~~~Sa~~~~gi~~l~~~l~~~i~~  179 (216)
                        ++.+|+.++.|++++...|.+.+..
T Consensus       172 ~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         172 QWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             ceEEEEecccccCHHHHHHHHHHHhhc
Confidence              8889999999999999999887754

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.74  E-value=7.9e-18  Score=138.31  Aligned_cols=165  Identities=27%  Similarity=0.378  Sum_probs=123.5

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+++|..|+||||||-.++..++.....+-.........+.-++  +..+|+|++..+..+.....-++.+|++.++
T Consensus         9 dVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~--vpt~ivD~ss~~~~~~~l~~EirkA~vi~lv   86 (625)
T KOG1707|consen    9 DVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPEN--VPTSIVDTSSDSDDRLCLRKEIRKADVICLV   86 (625)
T ss_pred             ceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCc--CceEEEecccccchhHHHHHHHhhcCEEEEE
Confidence            39999999999999999999999988765554433222223333334  6688999987766666667888999999999


Q ss_pred             EeCCCHhHHHHHHH-HHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHH-HHHHHHHhC-C-eEEEEecCCCCCHHH
Q 027949           95 YDVTDESSFNNIRN-WIRNIEQHAS--DNVNKILVGNKADMDESKRAVPTSK-GQALADEYG-I-KFFETSAKTNLNVEE  168 (216)
Q Consensus        95 ~d~~~~~~~~~~~~-~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~-~~~~~~~~~-~-~~~~~Sa~~~~gi~~  168 (216)
                      |+.+++++++.+.. |+..+++...  .++|+|+|+||+|...+... ..+. ..-+...+. + ..++|||++-.++.+
T Consensus        87 yavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~-s~e~~~~pim~~f~EiEtciecSA~~~~n~~e  165 (625)
T KOG1707|consen   87 YAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN-SDEVNTLPIMIAFAEIETCIECSALTLANVSE  165 (625)
T ss_pred             EecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc-chhHHHHHHHHHhHHHHHHHhhhhhhhhhhHh
Confidence            99999999999866 9988887663  57999999999998654333 1122 222222222 2 578999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 027949          169 VFFSIARDIKQRLA  182 (216)
Q Consensus       169 l~~~l~~~i~~~~~  182 (216)
                      +|.+..++++.-..
T Consensus       166 ~fYyaqKaVihPt~  179 (625)
T KOG1707|consen  166 LFYYAQKAVIHPTS  179 (625)
T ss_pred             hhhhhhheeeccCc
Confidence            99998888876443

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.72  E-value=3.6e-16  Score=118.88  Aligned_cols=152  Identities=17%  Similarity=0.168  Sum_probs=94.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCcccc--------------c---------eeeeEE---------------EEEEE
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFIT--------------T---------IGIDFK---------------IRTIE   58 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~--------------~---------~~~~~~---------------~~~~~   58 (216)
                      ||+++|..++|||||+++|....+......              +         .+.+..               ...+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            589999999999999999987554321110              0         000000               01122


Q ss_pred             ECCeEEEEEEEeCCCcccccccccccc--ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027949           59 LDGKRIKLQIWDTAGQERFRTITTAYY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK  136 (216)
Q Consensus        59 ~~~~~~~~~i~D~~G~~~~~~~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  136 (216)
                      ..+  ..+.++|+||+..|.......+  ..+|++++|+|+..... .....++..+...   +.|+++|+||+|+.+..
T Consensus        81 ~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~---~ip~ivvvNK~D~~~~~  154 (224)
T cd04165          81 KSS--KLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALAL---NIPVFVVVTKIDLAPAN  154 (224)
T ss_pred             eCC--cEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEECccccCHH
Confidence            223  5788999999987755443333  36899999999876543 2222333333332   68999999999975421


Q ss_pred             C-ccChHHHHHHHHH--------------------------hCCeEEEEecCCCCCHHHHHHHHH
Q 027949          137 R-AVPTSKGQALADE--------------------------YGIKFFETSAKTNLNVEEVFFSIA  174 (216)
Q Consensus       137 ~-~~~~~~~~~~~~~--------------------------~~~~~~~~Sa~~~~gi~~l~~~l~  174 (216)
                      . .....++..+...                          ..+++|.+||.+|+|+++++..|.
T Consensus       155 ~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         155 ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence            1 1112222223221                          124899999999999999988774

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd04167 Snu114p Snu114p subfamily

Probab=99.72  E-value=8e-17  Score=121.96  Aligned_cols=113  Identities=27%  Similarity=0.292  Sum_probs=78.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCc-------------------cccceeeeEEEEEEEE---CCeEEEEEEEeCCCc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTTS-------------------FITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQ   74 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~   74 (216)
                      +|+|+|..|+|||||+++|+.......                   ...+.+.......+.+   ++..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            589999999999999999987543211                   1111111122222222   345688999999999


Q ss_pred             cccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027949           75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD  133 (216)
Q Consensus        75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  133 (216)
                      ..+......++..+|++++|+|+.+..+... ..++..+..   .+.|+++|+||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence            9888778888899999999999987655432 333333322   258999999999974

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK12736 elongation factor Tu; Reviewed

Probab=99.72  E-value=1.8e-16  Score=130.30  Aligned_cols=159  Identities=19%  Similarity=0.168  Sum_probs=100.8

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCC----------------CCccccceeeeEEEEEEEECCeEEEEEEEeCCCcc
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   75 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (216)
                      ....++|+++|..++|||||+++|++...                ..+...+.+.+..  .+.+......+.++|+||+.
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~--~~~~~~~~~~i~~iDtPGh~   86 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTA--HVEYETEKRHYAHVDCPGHA   86 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEE--eeEecCCCcEEEEEECCCHH
Confidence            34569999999999999999999986311                0112334444433  33343334678899999998


Q ss_pred             ccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCcc--ChHHHHHHHHHhC
Q 027949           76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KILVGNKADMDESKRAV--PTSKGQALADEYG  152 (216)
Q Consensus        76 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~  152 (216)
                      .|.......+..+|++++|+|+.+..... ....+..+...   +.| +++++||+|+.+.....  ..+++..+....+
T Consensus        87 ~f~~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~  162 (394)
T PRK12736         87 DYVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD  162 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence            77665555567899999999998642211 12222223322   577 57889999986422211  1234555555554


Q ss_pred             -----CeEEEEecCCCC--------CHHHHHHHHHHH
Q 027949          153 -----IKFFETSAKTNL--------NVEEVFFSIARD  176 (216)
Q Consensus       153 -----~~~~~~Sa~~~~--------gi~~l~~~l~~~  176 (216)
                           ++++++||++|.        ++.++++.|.+.
T Consensus       163 ~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~  199 (394)
T PRK12736        163 FPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEY  199 (394)
T ss_pred             CCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHh
Confidence                 589999999983        455555555544

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.72  E-value=2.5e-16  Score=121.87  Aligned_cols=162  Identities=19%  Similarity=0.191  Sum_probs=117.3

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcc-----ccccc----cccc
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE-----RFRTI----TTAY   84 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~----~~~~   84 (216)
                      ....|+|.|.||+|||||++++++........|.++...+...+..++  ..++++||||.-     +.+..    ..+.
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL  244 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILAL  244 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence            347899999999999999999999988877777777788888888877  678889999942     11111    1111


Q ss_pred             cccccEEEEEEeCCCH--hHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEecC
Q 027949           85 YRGAMGILLVYDVTDE--SSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAK  161 (216)
Q Consensus        85 ~~~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~  161 (216)
                      -.-.++++|+||.+..  .+.+.-..++..+.....  .|+++|+||+|+.+.   ...+++.......+ .....+++.
T Consensus       245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~---e~~~~~~~~~~~~~~~~~~~~~~~  319 (346)
T COG1084         245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADE---EKLEEIEASVLEEGGEEPLKISAT  319 (346)
T ss_pred             HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccch---hHHHHHHHHHHhhccccccceeee
Confidence            1236889999999864  345555567788877764  899999999998542   23344444444444 357888999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhh
Q 027949          162 TNLNVEEVFFSIARDIKQRLA  182 (216)
Q Consensus       162 ~~~gi~~l~~~l~~~i~~~~~  182 (216)
                      .+.+++.+-..+.....+...
T Consensus       320 ~~~~~d~~~~~v~~~a~~~~~  340 (346)
T COG1084         320 KGCGLDKLREEVRKTALEPLL  340 (346)
T ss_pred             ehhhHHHHHHHHHHHhhchhh
Confidence            999999888888777555433

>cd01850 CDC_Septin CDC/Septin

Probab=99.72  E-value=2.8e-16  Score=123.05  Aligned_cols=144  Identities=20%  Similarity=0.273  Sum_probs=94.9

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCc----------cccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc---
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTS----------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT---   79 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---   79 (216)
                      ...++|+|+|.+|+|||||+|+|++..+...          ..++.........+..++..+.+.+|||||......   
T Consensus         2 g~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~   81 (276)
T cd01850           2 GFQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSD   81 (276)
T ss_pred             CcEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchh
Confidence            3569999999999999999999999876533          234444555556667788888999999999422110   


Q ss_pred             -----------------------ccccccc--cccEEEEEEeCCCHhHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027949           80 -----------------------ITTAYYR--GAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMD  133 (216)
Q Consensus        80 -----------------------~~~~~~~--~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~  133 (216)
                                             .....+.  .+|+++|+++.+... +... ...++.+..    ..|+++|+||+|+.
T Consensus        82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~~----~v~vi~VinK~D~l  156 (276)
T cd01850          82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLSK----RVNIIPVIAKADTL  156 (276)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHhc----cCCEEEEEECCCcC
Confidence                                   1112222  478888888876421 1111 223333332    58999999999974


Q ss_pred             CC-CCccChHHHHHHHHHhCCeEEEEecC
Q 027949          134 ES-KRAVPTSKGQALADEYGIKFFETSAK  161 (216)
Q Consensus       134 ~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (216)
                      .. +.......+.+.+..+++++|.....
T Consensus       157 ~~~e~~~~k~~i~~~l~~~~i~~~~~~~~  185 (276)
T cd01850         157 TPEELKEFKQRIMEDIEEHNIKIYKFPED  185 (276)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCceECCCCC
Confidence            31 22334556677778888988877653

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.71  E-value=4.9e-16  Score=116.23  Aligned_cols=158  Identities=15%  Similarity=0.162  Sum_probs=94.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCcccccee-eeE--EEEEEEECCeEEEEEEEeCCCcccccccc-----cccccc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIG-IDF--KIRTIELDGKRIKLQIWDTAGQERFRTIT-----TAYYRG   87 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-----~~~~~~   87 (216)
                      ++|+|+|.+|+|||||+|.|++...........+ ...  ....+.... ...+.+||+||........     ...+..
T Consensus         2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~   80 (197)
T cd04104           2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPK-FPNVTLWDLPGIGSTAFPPDDYLEEMKFSE   80 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCC-CCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence            7899999999999999999998654322111111 011  111111111 2368999999975322222     222567


Q ss_pred             ccEEEEEEeCCCHhHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc----------cChHHHHHHHH----HhC
Q 027949           88 AMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMDESKRA----------VPTSKGQALAD----EYG  152 (216)
Q Consensus        88 ~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----------~~~~~~~~~~~----~~~  152 (216)
                      +|+++++.+. .   +... ..++..+...   +.|+++|+||+|+......          ...+..+..+.    ..+
T Consensus        81 ~d~~l~v~~~-~---~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~  153 (197)
T cd04104          81 YDFFIIISST-R---FSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG  153 (197)
T ss_pred             cCEEEEEeCC-C---CCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence            8988887543 1   2222 2344445443   5799999999997321110          11112222222    212


Q ss_pred             ---CeEEEEecC--CCCCHHHHHHHHHHHHHHHh
Q 027949          153 ---IKFFETSAK--TNLNVEEVFFSIARDIKQRL  181 (216)
Q Consensus       153 ---~~~~~~Sa~--~~~gi~~l~~~l~~~i~~~~  181 (216)
                         .++|.+|+.  .+.++..+.+.++..+.++.
T Consensus       154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~  187 (197)
T cd04104         154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK  187 (197)
T ss_pred             CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence               389999998  57899999999998887643

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.71  E-value=2.7e-16  Score=129.34  Aligned_cols=152  Identities=20%  Similarity=0.162  Sum_probs=97.0

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCC-------C---------CCccccceeeeEEEEEEEECCeEEEEEEEeCCCcc
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGS-------F---------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   75 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~-------~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (216)
                      .+..++|+++|..++|||||+++|++..       .         ..+...+.+.+..  .+.+......+.+|||||++
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~--~~~~~~~~~~~~liDtpGh~   86 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTA--HVEYETENRHYAHVDCPGHA   86 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeE--EEEEcCCCEEEEEEECCchH
Confidence            3556999999999999999999997420       0         1122244444443  33443344678999999998


Q ss_pred             ccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCCCcc--ChHHHHHHHHHhC
Q 027949           76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKI-LVGNKADMDESKRAV--PTSKGQALADEYG  152 (216)
Q Consensus        76 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~--~~~~~~~~~~~~~  152 (216)
                      .|..........+|++++|+|+.+...... ...+..+...   +.|.+ +++||+|+.+.....  ..+++..++...+
T Consensus        87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~  162 (394)
T TIGR00485        87 DYVKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD  162 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence            876555555677899999999987422221 2222223222   56765 679999986422111  1234566666554


Q ss_pred             -----CeEEEEecCCCC-CHHHH
Q 027949          153 -----IKFFETSAKTNL-NVEEV  169 (216)
Q Consensus       153 -----~~~~~~Sa~~~~-gi~~l  169 (216)
                           ++++++||.+|. |..++
T Consensus       163 ~~~~~~~ii~vSa~~g~~g~~~~  185 (394)
T TIGR00485       163 FPGDDTPIIRGSALKALEGDAEW  185 (394)
T ss_pred             CCccCccEEECccccccccCCch
Confidence                 689999999875 43333

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK12735 elongation factor Tu; Reviewed

Probab=99.71  E-value=3.8e-16  Score=128.43  Aligned_cols=159  Identities=18%  Similarity=0.142  Sum_probs=100.7

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcC-------CC---------CCccccceeeeEEEEEEEECCeEEEEEEEeCCCcc
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDG-------SF---------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   75 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~-------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (216)
                      ....++|+++|..++|||||+++|++.       .+         ..+...+.+.+.....+..++  ..+.|+||||+.
T Consensus         9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~--~~i~~iDtPGh~   86 (396)
T PRK12735          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETAN--RHYAHVDCPGHA   86 (396)
T ss_pred             CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCC--cEEEEEECCCHH
Confidence            355699999999999999999999862       10         011233444443333333333  678999999998


Q ss_pred             ccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCCC--ccChHHHHHHHHHhC
Q 027949           76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKI-LVGNKADMDESKR--AVPTSKGQALADEYG  152 (216)
Q Consensus        76 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~--~~~~~~~~~~~~~~~  152 (216)
                      .|.......+..+|++++|+|+.+... ......+..+..   .+.|.+ +++||+|+.+...  .....++..+...++
T Consensus        87 ~f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~  162 (396)
T PRK12735         87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD  162 (396)
T ss_pred             HHHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcC
Confidence            776656666778999999999987432 122233333332   257765 5799999864211  111234555555543


Q ss_pred             -----CeEEEEecCCCC----------CHHHHHHHHHHH
Q 027949          153 -----IKFFETSAKTNL----------NVEEVFFSIARD  176 (216)
Q Consensus       153 -----~~~~~~Sa~~~~----------gi~~l~~~l~~~  176 (216)
                           ++++++||.+|.          ++..|++.|.+.
T Consensus       163 ~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~  201 (396)
T PRK12735        163 FPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY  201 (396)
T ss_pred             CCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence                 689999999985          455555555443

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.70  E-value=9.4e-16  Score=120.05  Aligned_cols=112  Identities=23%  Similarity=0.340  Sum_probs=78.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCc----c--------------ccceeeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTTS----F--------------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR   78 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~~----~--------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   78 (216)
                      +|+++|.+|+|||||+++|+...-...    .              ....+.......+.+++  +.+.+|||||...+.
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~   78 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV   78 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence            489999999999999999975321100    0              01222333444556666  688999999998777


Q ss_pred             cccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949           79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE  134 (216)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (216)
                      ..+...++.+|++++|+|+++.........| ..+..   .+.|.++++||+|+..
T Consensus        79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~---~~~p~iivvNK~D~~~  130 (268)
T cd04170          79 GETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE---AGIPRIIFINKMDRER  130 (268)
T ss_pred             HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCccCC
Confidence            7778888999999999999876544322222 22322   2689999999999743

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=4.8e-17  Score=113.56  Aligned_cols=156  Identities=19%  Similarity=0.281  Sum_probs=116.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      -|++++|..|+|||||++.|.+..... +.||.  .+....+.+.+  .+++-+|.+|+..-+..|..++..+|++++.+
T Consensus        21 gKllFlGLDNAGKTTLLHMLKdDrl~q-hvPTl--HPTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lv   95 (193)
T KOG0077|consen   21 GKLLFLGLDNAGKTTLLHMLKDDRLGQ-HVPTL--HPTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYLV   95 (193)
T ss_pred             ceEEEEeecCCchhhHHHHHccccccc-cCCCc--CCChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEeee
Confidence            589999999999999999998876543 33432  24445566677  78889999999988889999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC--------------CeEEEEec
Q 027949           96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYG--------------IKFFETSA  160 (216)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------------~~~~~~Sa  160 (216)
                      |+-|.+.+.+.+..+..+.... -...|+++.+||+|.+.+..+........+.+..+              +.+|.||.
T Consensus        96 da~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi  175 (193)
T KOG0077|consen   96 DAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSI  175 (193)
T ss_pred             ehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEE
Confidence            9999999998888766654432 24799999999999866432222211222221111              36788999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 027949          161 KTNLNVEEVFFSIARD  176 (216)
Q Consensus       161 ~~~~gi~~l~~~l~~~  176 (216)
                      ..+.|.-+.|.|+...
T Consensus       176 ~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  176 VRKMGYGEGFKWLSQY  191 (193)
T ss_pred             EccCccceeeeehhhh
Confidence            9988888888887654

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.70  E-value=1.8e-16  Score=120.06  Aligned_cols=169  Identities=18%  Similarity=0.290  Sum_probs=108.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCcccc-ceeeeEEEEEEEECCeEEEEEEEeCCCcccccc-----ccccccccccE
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFIT-TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-----ITTAYYRGAMG   90 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~~d~   90 (216)
                      ||+++|+.+|||||+.+.+..+-.+..... ..+.+.....+...+ ...+.+||.||+..+..     .....++++.+
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~-~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLS-FLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTT-SCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCC-CcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            799999999999999999997754432221 233344444554333 26899999999865433     34667899999


Q ss_pred             EEEEEeCCCHh---HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-c----cChHHHHHHHHHhC---CeEEEEe
Q 027949           91 ILLVYDVTDES---SFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR-A----VPTSKGQALADEYG---IKFFETS  159 (216)
Q Consensus        91 ~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~----~~~~~~~~~~~~~~---~~~~~~S  159 (216)
                      +|||+|+...+   .+..+...+..+.+..+ +..+.+++.|+|+..+.. .    ...+.+.+.+...+   +.++.||
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp-~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS  158 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSP-NIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS  158 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHHHST-T-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHHhCC-CCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence            99999998433   33444445555555554 788999999999854221 1    11233344444555   7899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHhhcccCCC
Q 027949          160 AKTNLNVEEVFFSIARDIKQRLADTDSRA  188 (216)
Q Consensus       160 a~~~~gi~~l~~~l~~~i~~~~~~~~~~~  188 (216)
                      ..+ ..+-+.|..+++.+..+....+...
T Consensus       159 I~D-~Sly~A~S~Ivq~LiP~~~~le~~L  186 (232)
T PF04670_consen  159 IWD-ESLYEAWSKIVQKLIPNLSTLENLL  186 (232)
T ss_dssp             TTS-THHHHHHHHHHHTTSTTHCCCCCCC
T ss_pred             CcC-cHHHHHHHHHHHHHcccHHHHHHHH
Confidence            998 5999999999999888776655443

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>CHL00071 tufA elongation factor Tu

Probab=99.70  E-value=5e-16  Score=128.21  Aligned_cols=149  Identities=17%  Similarity=0.131  Sum_probs=97.5

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCC----------------CCccccceeeeEEEEEEEECCeEEEEEEEeCCCcc
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   75 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (216)
                      .+..++|+++|.+++|||||+++|++..-                ..+..++.+.+.....+..++  ..+.++||||+.
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~~~~iDtPGh~   86 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETEN--RHYAHVDCPGHA   86 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCC--eEEEEEECCChH
Confidence            45669999999999999999999987411                112224444444333444444  678899999988


Q ss_pred             ccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC--ccChHHHHHHHHHhC
Q 027949           76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KILVGNKADMDESKR--AVPTSKGQALADEYG  152 (216)
Q Consensus        76 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~  152 (216)
                      .|.......+..+|++++|+|+..... ......+..+...   +.| +++++||+|+.+...  ....+++..+....+
T Consensus        87 ~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~  162 (409)
T CHL00071         87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV---GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD  162 (409)
T ss_pred             HHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            776656666778999999999986432 2222222333222   578 678899999864221  111234555555543


Q ss_pred             -----CeEEEEecCCCCCH
Q 027949          153 -----IKFFETSAKTNLNV  166 (216)
Q Consensus       153 -----~~~~~~Sa~~~~gi  166 (216)
                           ++++++||.+|.++
T Consensus       163 ~~~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        163 FPGDDIPIVSGSALLALEA  181 (409)
T ss_pred             CCCCcceEEEcchhhcccc
Confidence                 68999999998743

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.69  E-value=7.1e-16  Score=126.11  Aligned_cols=162  Identities=25%  Similarity=0.262  Sum_probs=122.3

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCC---------------CCCccccceeeeEEEEEE-EECCeEEEEEEEeCCCccc
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGS---------------FTTSFITTIGIDFKIRTI-ELDGKRIKLQIWDTAGQER   76 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~---------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~   76 (216)
                      ++.=++.|+-.-.-|||||..+|+...               ...+...+.+..-....+ +.++..+.++++||||+-.
T Consensus        58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD  137 (650)
T KOG0462|consen   58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD  137 (650)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence            566678999999999999999987621               112344555544444443 3356778999999999999


Q ss_pred             cccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEE
Q 027949           77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFF  156 (216)
Q Consensus        77 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  156 (216)
                      |.......+..++++|+|+|++..--.+.+..++..+..    +..+|.|+||+|++.+..+.-..++.++......+.+
T Consensus       138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~----~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i  213 (650)
T KOG0462|consen  138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA----GLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVI  213 (650)
T ss_pred             ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc----CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceE
Confidence            999888889999999999999987666677666655543    6789999999999875433333344444444456899


Q ss_pred             EEecCCCCCHHHHHHHHHHHHH
Q 027949          157 ETSAKTNLNVEEVFFSIARDIK  178 (216)
Q Consensus       157 ~~Sa~~~~gi~~l~~~l~~~i~  178 (216)
                      .+||++|.|+++++++|++.+.
T Consensus       214 ~vSAK~G~~v~~lL~AII~rVP  235 (650)
T KOG0462|consen  214 YVSAKTGLNVEELLEAIIRRVP  235 (650)
T ss_pred             EEEeccCccHHHHHHHHHhhCC
Confidence            9999999999999999988764

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.69  E-value=9.1e-16  Score=119.35  Aligned_cols=166  Identities=20%  Similarity=0.215  Sum_probs=114.5

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccc----ccccccccc---
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF----RTITTAYYR---   86 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~~~~~---   86 (216)
                      ..-.|.++|.|++|||||++.+.+.+.-.-..|.++..+....+.... ...+++-|.||.-+-    ..+-..|++   
T Consensus       158 llADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~-~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIE  236 (369)
T COG0536         158 LLADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG-GESFVVADIPGLIEGASEGVGLGLRFLRHIE  236 (369)
T ss_pred             eecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-CCcEEEecCcccccccccCCCccHHHHHHHH
Confidence            344678999999999999999999887655566667777777777633 246889999995432    223444543   


Q ss_pred             cccEEEEEEeCCCHhH---HHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEE-Eec
Q 027949           87 GAMGILLVYDVTDESS---FNNIRNWIRNIEQHAS--DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFE-TSA  160 (216)
Q Consensus        87 ~~d~~i~v~d~~~~~~---~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~Sa  160 (216)
                      .+.++++|+|++..+.   .+....+..++..+..  .+.|.+||+||+|+..+ .+........+.+..++..+. +||
T Consensus       237 Rt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~-~e~~~~~~~~l~~~~~~~~~~~ISa  315 (369)
T COG0536         237 RTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLD-EEELEELKKALAEALGWEVFYLISA  315 (369)
T ss_pred             hhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcC-HHHHHHHHHHHHHhcCCCcceeeeh
Confidence            5789999999986442   3444444444444332  36899999999996532 222223334444455553222 999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHh
Q 027949          161 KTNLNVEEVFFSIARDIKQRL  181 (216)
Q Consensus       161 ~~~~gi~~l~~~l~~~i~~~~  181 (216)
                      .++.|++++...+.+.+.+..
T Consensus       316 ~t~~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         316 LTREGLDELLRALAELLEETK  336 (369)
T ss_pred             hcccCHHHHHHHHHHHHHHhh
Confidence            999999999999999888876

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.68  E-value=2.8e-15  Score=115.87  Aligned_cols=156  Identities=21%  Similarity=0.177  Sum_probs=113.7

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccc-------ccccccc
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------TITTAYY   85 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~   85 (216)
                      +-..+|+++|.|++|||||+++|++........++++.+.....+.+++  .++++.|+||.-+-.       .......
T Consensus        61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~  138 (365)
T COG1163          61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVA  138 (365)
T ss_pred             cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeee
Confidence            3447899999999999999999999887766667777889999999999  889999999843211       2355677


Q ss_pred             ccccEEEEEEeCCCHhH-HHHHHHHHHHH-----------------------------------------HHhc------
Q 027949           86 RGAMGILLVYDVTDESS-FNNIRNWIRNI-----------------------------------------EQHA------  117 (216)
Q Consensus        86 ~~~d~~i~v~d~~~~~~-~~~~~~~~~~~-----------------------------------------~~~~------  117 (216)
                      ++||++|+|+|+..+.. .+.+...+...                                         .++.      
T Consensus       139 R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V  218 (365)
T COG1163         139 RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADV  218 (365)
T ss_pred             ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceE
Confidence            99999999999986554 33332222110                                         1100      


Q ss_pred             ------------------CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 027949          118 ------------------SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIK  178 (216)
Q Consensus       118 ------------------~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  178 (216)
                                        --..|.++|.||.|+..      .+....+.+..  .++.+||..+.|++++.+.|-+.+-
T Consensus       219 ~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~------~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~  289 (365)
T COG1163         219 LIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG------LEELERLARKP--NSVPISAKKGINLDELKERIWDVLG  289 (365)
T ss_pred             EEecCCcHHHHHHHHhhcceeeeeEEEEecccccC------HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence                              01479999999999754      23333333333  7899999999999999888877653

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.67  E-value=7.1e-16  Score=128.15  Aligned_cols=150  Identities=21%  Similarity=0.144  Sum_probs=101.6

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCC-------------------------------CCccccceeeeEEEEEEEECC
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSF-------------------------------TTSFITTIGIDFKIRTIELDG   61 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~   61 (216)
                      ...++|+++|..++|||||+.+|+...-                               ..+...+.+.+.....+..++
T Consensus         5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~   84 (447)
T PLN00043          5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK   84 (447)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence            3459999999999999999998864110                               112223344444444444444


Q ss_pred             eEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHH-------HHHHHHHHHHHHhcCCCC-cEEEEEeCCCCC
Q 027949           62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF-------NNIRNWIRNIEQHASDNV-NKILVGNKADMD  133 (216)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~-------~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~  133 (216)
                        +.++++|+||+..|-......+..+|++|+|+|+.+.. +       ......+..+...   +. +++|++||+|+.
T Consensus        85 --~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~-~e~g~~~~~qT~eh~~~~~~~---gi~~iIV~vNKmD~~  158 (447)
T PLN00043         85 --YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGG-FEAGISKDGQTREHALLAFTL---GVKQMICCCNKMDAT  158 (447)
T ss_pred             --EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCc-eecccCCCchHHHHHHHHHHc---CCCcEEEEEEcccCC
Confidence              78899999999999888888889999999999998631 1       1222222222222   56 468889999975


Q ss_pred             CCC-----CccChHHHHHHHHHhC-----CeEEEEecCCCCCHHH
Q 027949          134 ESK-----RAVPTSKGQALADEYG-----IKFFETSAKTNLNVEE  168 (216)
Q Consensus       134 ~~~-----~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~  168 (216)
                      +..     .....+++..++...+     ++|+++||.+|+|+.+
T Consensus       159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            211     1122455666666665     6799999999999864

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.67  E-value=8.2e-16  Score=119.96  Aligned_cols=112  Identities=21%  Similarity=0.147  Sum_probs=81.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC------------------CCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSF------------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR   78 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   78 (216)
                      +|+++|.+|+|||||+++|+...-                  ..+...+.+.+.....+.+.+  ..+.+|||||+..+.
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~   78 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT   78 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence            489999999999999999974211                  112233455555666677776  788999999998887


Q ss_pred             cccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949           79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE  134 (216)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (216)
                      ..+...++.+|++|+|+|+.+...-. ....+..+..   .+.|+++++||+|+.+
T Consensus        79 ~~~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~---~~~p~ivviNK~D~~~  130 (270)
T cd01886          79 IEVERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADR---YNVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCEEEEEECCCCCC
Confidence            77888899999999999997753222 2233333332   2689999999999864

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.67  E-value=8e-16  Score=128.81  Aligned_cols=153  Identities=21%  Similarity=0.154  Sum_probs=96.0

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCC--C-------------------------------ccccceeeeEEEEEEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFT--T-------------------------------SFITTIGIDFKIRTIEL   59 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~--~-------------------------------~~~~~~~~~~~~~~~~~   59 (216)
                      ...++|+|+|..++|||||+++|+...-.  .                               +...+.+.+.....+..
T Consensus        25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~  104 (474)
T PRK05124         25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST  104 (474)
T ss_pred             cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence            45599999999999999999999754211  0                               01122334444444444


Q ss_pred             CCeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc
Q 027949           60 DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAV  139 (216)
Q Consensus        60 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~  139 (216)
                      ++  ..+.|+||||+..|.......+..+|++++|+|+.....-.....+ ..+... . ..|++|++||+|+.+.....
T Consensus       105 ~~--~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~l~~~l-g-~~~iIvvvNKiD~~~~~~~~  179 (474)
T PRK05124        105 EK--RKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS-FIATLL-G-IKHLVVAVNKMDLVDYSEEV  179 (474)
T ss_pred             CC--cEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH-HHHHHh-C-CCceEEEEEeeccccchhHH
Confidence            44  6789999999887765444556889999999999764321111111 111111 1 24788999999986422211


Q ss_pred             Ch---HHHHHHHHHh----CCeEEEEecCCCCCHHHHH
Q 027949          140 PT---SKGQALADEY----GIKFFETSAKTNLNVEEVF  170 (216)
Q Consensus       140 ~~---~~~~~~~~~~----~~~~~~~Sa~~~~gi~~l~  170 (216)
                      ..   +++..+....    .++++++||++|+|++++-
T Consensus       180 ~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~  217 (474)
T PRK05124        180 FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS  217 (474)
T ss_pred             HHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence            11   2223333333    3689999999999998753

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.67  E-value=1.4e-15  Score=104.14  Aligned_cols=106  Identities=24%  Similarity=0.259  Sum_probs=72.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC-CCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccc---------cccccccc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR---------TITTAYYR   86 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~~   86 (216)
                      +|+|+|.+|+|||||+|+|++... .....+..+.......+.+++  ..+.++||||...-.         ......+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNN--KKFILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETT--EEEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeece--eeEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            689999999999999999998643 233334455555556667777  455799999953211         11233347


Q ss_pred             cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 027949           87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNK  129 (216)
Q Consensus        87 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  129 (216)
                      .+|+++||+|++++.. .....++..+.    .+.|+++|+||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence            8999999999887422 23333444442    47899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.66  E-value=1e-15  Score=115.93  Aligned_cols=113  Identities=20%  Similarity=0.233  Sum_probs=78.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCC--C--------------ccccceeeeEEEEEEEEC--------CeEEEEEEEeCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFT--T--------------SFITTIGIDFKIRTIELD--------GKRIKLQIWDTA   72 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~--~--------------~~~~~~~~~~~~~~~~~~--------~~~~~~~i~D~~   72 (216)
                      +|+|+|..++|||||+.+|+...-.  .              +...+.+.......+.+.        +..+.+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            6899999999999999999764311  0              111112222222233333        346889999999


Q ss_pred             CccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027949           73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD  133 (216)
Q Consensus        73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  133 (216)
                      |+..|.......++.+|++++|+|+.+....... ..+.....   .+.|+++|+||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~~---~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQALK---ERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCCcc
Confidence            9999988888899999999999999886544432 22222222   267999999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.66  E-value=8.7e-16  Score=126.63  Aligned_cols=149  Identities=23%  Similarity=0.187  Sum_probs=95.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCC---------------------------------CccccceeeeEEEEEEEECCe
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFT---------------------------------TSFITTIGIDFKIRTIELDGK   62 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~   62 (216)
                      ++|+|+|..++|||||+.+|+...-.                                 .+...+.+.+.....+.+++ 
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~-   79 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDK-   79 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCC-
Confidence            58999999999999999999643210                                 01112233445555555555 


Q ss_pred             EEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccC--
Q 027949           63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVP--  140 (216)
Q Consensus        63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--  140 (216)
                       ..+.|+||||++.|.......+..+|++|+|+|+.....-.....+ ..+....  ..++++++||+|+.+......  
T Consensus        80 -~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~-~~~~~~~--~~~iivviNK~D~~~~~~~~~~~  155 (406)
T TIGR02034        80 -RKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHS-YIASLLG--IRHVVLAVNKMDLVDYDEEVFEN  155 (406)
T ss_pred             -eEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHH-HHHHHcC--CCcEEEEEEecccccchHHHHHH
Confidence             6788999999988765555667899999999999765322111111 1122211  346888999999864222111  


Q ss_pred             -hHHHHHHHHHhC---CeEEEEecCCCCCHHHH
Q 027949          141 -TSKGQALADEYG---IKFFETSAKTNLNVEEV  169 (216)
Q Consensus       141 -~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l  169 (216)
                       .++...+....+   ++++++||++|+|+++.
T Consensus       156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~  188 (406)
T TIGR02034       156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR  188 (406)
T ss_pred             HHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence             122333334444   47999999999999863

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.66  E-value=1.6e-15  Score=126.18  Aligned_cols=151  Identities=21%  Similarity=0.135  Sum_probs=98.7

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCC--C-----------------------------CCccccceeeeEEEEEEEECC
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGS--F-----------------------------TTSFITTIGIDFKIRTIELDG   61 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~   61 (216)
                      ...++|+++|..++|||||+.+|+...  .                             ..+...+.+.+.....+.+++
T Consensus         5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~   84 (446)
T PTZ00141          5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (446)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence            455999999999999999999987511  0                             112233444555445555555


Q ss_pred             eEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhH---H---HHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC
Q 027949           62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS---F---NNIRNWIRNIEQHASDNVN-KILVGNKADMDE  134 (216)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~  134 (216)
                        ..+.|+|+||+..|.......+..+|++++|+|+.....   +   ....+-+..+...   +.| ++|++||+|...
T Consensus        85 --~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~~~  159 (446)
T PTZ00141         85 --YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDDKT  159 (446)
T ss_pred             --eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEcccccc
Confidence              788999999999887777777889999999999986521   0   1222222222222   555 578999999532


Q ss_pred             C-----CCccChHHHHHHHHHhC-----CeEEEEecCCCCCHHH
Q 027949          135 S-----KRAVPTSKGQALADEYG-----IKFFETSAKTNLNVEE  168 (216)
Q Consensus       135 ~-----~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~  168 (216)
                      .     ......+++..+....+     ++++++|+.+|+|+.+
T Consensus       160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            1     11122233444444333     6799999999999864

>PRK00049 elongation factor Tu; Reviewed

Probab=99.66  E-value=4.7e-15  Score=121.92  Aligned_cols=148  Identities=19%  Similarity=0.138  Sum_probs=95.4

Q ss_pred             CCCceEEEEEEcCCCCcHHHHHHHHHcCCC----------------CCccccceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 027949           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   74 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   74 (216)
                      +....++|+++|..++|||||+++|+....                ..+...+.+.+.....+..++  ..+.++||||+
T Consensus         8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~--~~i~~iDtPG~   85 (396)
T PRK00049          8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEK--RHYAHVDCPGH   85 (396)
T ss_pred             CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCC--eEEEEEECCCH
Confidence            345679999999999999999999986311                111234444444333333333  67889999999


Q ss_pred             cccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCCCc--cChHHHHHHHHHh
Q 027949           75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKI-LVGNKADMDESKRA--VPTSKGQALADEY  151 (216)
Q Consensus        75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~--~~~~~~~~~~~~~  151 (216)
                      ..|.......+..+|++++|+|+..... ......+..+...   +.|.+ +++||+|+.+....  ....++..+....
T Consensus        86 ~~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~  161 (396)
T PRK00049         86 ADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKY  161 (396)
T ss_pred             HHHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc---CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhc
Confidence            8776666666789999999999986532 2222233333322   57876 57999998642111  1122344444443


Q ss_pred             -----CCeEEEEecCCCC
Q 027949          152 -----GIKFFETSAKTNL  164 (216)
Q Consensus       152 -----~~~~~~~Sa~~~~  164 (216)
                           .++++++||.+|.
T Consensus       162 ~~~~~~~~iv~iSa~~g~  179 (396)
T PRK00049        162 DFPGDDTPIIRGSALKAL  179 (396)
T ss_pred             CCCccCCcEEEeeccccc
Confidence                 3689999999875

>cd04169 RF3 RF3 subfamily

Probab=99.66  E-value=3.3e-15  Score=116.45  Aligned_cols=112  Identities=17%  Similarity=0.161  Sum_probs=77.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCc----------------------cccceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTTS----------------------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   74 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   74 (216)
                      +|+|+|.+|+|||||+++|+...-...                      ...+.+.......+.+.+  +.+.+|||||+
T Consensus         4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~--~~i~liDTPG~   81 (267)
T cd04169           4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRD--CVINLLDTPGH   81 (267)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCC--EEEEEEECCCc
Confidence            689999999999999999975311000                      011222233344555555  78999999999


Q ss_pred             cccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949           75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE  134 (216)
Q Consensus        75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (216)
                      ..|.......++.+|++|+|+|+++... .....++.....   .+.|+++++||+|+.+
T Consensus        82 ~df~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~~~---~~~P~iivvNK~D~~~  137 (267)
T cd04169          82 EDFSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVCRL---RGIPIITFINKLDREG  137 (267)
T ss_pred             hHHHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence            8887766777889999999999987532 222233333322   3689999999999754

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PRK13351 elongation factor G; Reviewed

Probab=99.66  E-value=1.2e-15  Score=133.65  Aligned_cols=116  Identities=17%  Similarity=0.200  Sum_probs=83.9

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCC--------CC----------ccccceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSF--------TT----------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   74 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~--------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   74 (216)
                      +...+|+|+|..|+|||||+++|+...-        ..          +.....+.......+.+.+  +.+.+|||||+
T Consensus         6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~   83 (687)
T PRK13351          6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDN--HRINLIDTPGH   83 (687)
T ss_pred             ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECC--EEEEEEECCCc
Confidence            3567999999999999999999975321        00          0012223333444566665  78999999999


Q ss_pred             cccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949           75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE  134 (216)
Q Consensus        75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (216)
                      ..+...+..+++.+|++|+|+|+.+.........| ..+..   .+.|+++|+||+|+..
T Consensus        84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~  139 (687)
T PRK13351         84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG  139 (687)
T ss_pred             HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence            88888888899999999999999887655443333 23322   2689999999999854

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.66  E-value=7.7e-15  Score=120.44  Aligned_cols=157  Identities=22%  Similarity=0.214  Sum_probs=116.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECC-eEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG-KRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .=|.++|.-..|||||+..+.+.++...-.-+.+.+..-..+..+- ....+.|+||||++.|..+...-..-+|++|+|
T Consensus         6 PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILV   85 (509)
T COG0532           6 PVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILV   85 (509)
T ss_pred             CEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEE
Confidence            5689999999999999999999988776666666666666666641 224788999999999999888888889999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC---------CeEEEEecCCCCC
Q 027949           95 YDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG---------IKFFETSAKTNLN  165 (216)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~g  165 (216)
                      +++++.---+..    ..+......+.|++|.+||+|.++.    .+.....-..++|         ..++++||++|+|
T Consensus        86 Va~dDGv~pQTi----EAI~hak~a~vP~iVAiNKiDk~~~----np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~G  157 (509)
T COG0532          86 VAADDGVMPQTI----EAINHAKAAGVPIVVAINKIDKPEA----NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEG  157 (509)
T ss_pred             EEccCCcchhHH----HHHHHHHHCCCCEEEEEecccCCCC----CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCC
Confidence            999985322222    2233333448999999999998643    2233322222223         5899999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 027949          166 VEEVFFSIARDIKQR  180 (216)
Q Consensus       166 i~~l~~~l~~~i~~~  180 (216)
                      +++|+..|+-...-.
T Consensus       158 i~eLL~~ill~aev~  172 (509)
T COG0532         158 IDELLELILLLAEVL  172 (509)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999876554443

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.66  E-value=5e-15  Score=117.68  Aligned_cols=81  Identities=20%  Similarity=0.287  Sum_probs=58.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEE---------------------CC-eEEEEEEEeCCCc-
Q 027949           18 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL---------------------DG-KRIKLQIWDTAGQ-   74 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~i~D~~G~-   74 (216)
                      |+++|.+++|||||+++|++........|..+.+.......+                     ++ ..+.+.+||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            579999999999999999998765444444444444443332                     22 3368999999997 


Q ss_pred             ---cccccccccc---cccccEEEEEEeCC
Q 027949           75 ---ERFRTITTAY---YRGAMGILLVYDVT   98 (216)
Q Consensus        75 ---~~~~~~~~~~---~~~~d~~i~v~d~~   98 (216)
                         +++..+...|   ++++|++++|+|++
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence               4444444444   88999999999997

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PLN03126 Elongation factor Tu; Provisional

Probab=99.65  E-value=4e-15  Score=124.30  Aligned_cols=148  Identities=18%  Similarity=0.128  Sum_probs=98.3

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCC------C----------CCccccceeeeEEEEEEEECCeEEEEEEEeCCCcc
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGS------F----------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   75 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (216)
                      ....++|+++|..++|||||+++|+...      .          ..+...+.+.+.....+..++  ..+.++|+||+.
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--~~i~liDtPGh~  155 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHA  155 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCC--cEEEEEECCCHH
Confidence            4567999999999999999999998521      0          122334444444444444454  678899999998


Q ss_pred             ccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC--ccChHHHHHHHHHh-
Q 027949           76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KILVGNKADMDESKR--AVPTSKGQALADEY-  151 (216)
Q Consensus        76 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~-  151 (216)
                      .|-......+..+|++++|+|+.+.... ....++..+...   +.| +++++||+|+.+.+.  ....+++..+.... 
T Consensus       156 ~f~~~~~~g~~~aD~ailVVda~~G~~~-qt~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g  231 (478)
T PLN03126        156 DYVKNMITGAAQMDGAILVVSGADGPMP-QTKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYE  231 (478)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcC
Confidence            8876666667789999999998865332 223333333322   577 678899999864221  11123455555543 


Q ss_pred             ----CCeEEEEecCCCCC
Q 027949          152 ----GIKFFETSAKTNLN  165 (216)
Q Consensus       152 ----~~~~~~~Sa~~~~g  165 (216)
                          .++++++|+.+|.+
T Consensus       232 ~~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        232 FPGDDIPIISGSALLALE  249 (478)
T ss_pred             CCcCcceEEEEEcccccc
Confidence                36899999998853

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.64  E-value=4e-15  Score=125.76  Aligned_cols=116  Identities=16%  Similarity=0.134  Sum_probs=79.8

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCC--CC--C------------------ccccceeeeEEEEEEEECCeEEEEEEEe
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGS--FT--T------------------SFITTIGIDFKIRTIELDGKRIKLQIWD   70 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~--~~--~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D   70 (216)
                      ...-+|+|+|..++|||||+++|+...  ..  .                  +...+.+.......+.+++  +.+++||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~--~~inliD   85 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRD--CLINLLD   85 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECC--EEEEEEE
Confidence            345689999999999999999997411  10  0                  0011122233334455555  7899999


Q ss_pred             CCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949           71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE  134 (216)
Q Consensus        71 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (216)
                      |||+..|.......++.+|++|+|+|+.+.... ....++.....   .+.|+++++||+|+..
T Consensus        86 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~~  145 (526)
T PRK00741         86 TPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRDG  145 (526)
T ss_pred             CCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCcccc
Confidence            999988887777788999999999999875322 23333333322   3789999999999743

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.64  E-value=4e-15  Score=120.03  Aligned_cols=160  Identities=25%  Similarity=0.288  Sum_probs=121.1

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCC---------------CCCccccceeeeEEEEEEEE---CCeEEEEEEEeCCCc
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGS---------------FTTSFITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQ   74 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~---------------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~   74 (216)
                      ++.=+..++-.-.-|||||..+|+...               ..-+...+.+.......+.+   +|..+.++++||||+
T Consensus         7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH   86 (603)
T COG0481           7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH   86 (603)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence            344466888899999999999987621               22345566666666665555   557899999999999


Q ss_pred             cccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-
Q 027949           75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI-  153 (216)
Q Consensus        75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-  153 (216)
                      -.|.-.....+..|.++++|+|++..-..+.+.+.+..+..    +.-++.|+||+||+.+..+.-   ..++-.-.|+ 
T Consensus        87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Adperv---k~eIe~~iGid  159 (603)
T COG0481          87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAADPERV---KQEIEDIIGID  159 (603)
T ss_pred             cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCCHHHH---HHHHHHHhCCC
Confidence            88877777778889999999999998877888887777754    577899999999976533222   2333334453 


Q ss_pred             --eEEEEecCCCCCHHHHHHHHHHHHHH
Q 027949          154 --KFFETSAKTNLNVEEVFFSIARDIKQ  179 (216)
Q Consensus       154 --~~~~~Sa~~~~gi~~l~~~l~~~i~~  179 (216)
                        ..+.+||++|.||+++++.|++.+..
T Consensus       160 ~~dav~~SAKtG~gI~~iLe~Iv~~iP~  187 (603)
T COG0481         160 ASDAVLVSAKTGIGIEDVLEAIVEKIPP  187 (603)
T ss_pred             cchheeEecccCCCHHHHHHHHHhhCCC
Confidence              68999999999999999999887643

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.63  E-value=2.2e-14  Score=107.25  Aligned_cols=160  Identities=16%  Similarity=0.188  Sum_probs=99.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCcc--ccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc-----------ccc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSF--ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-----------ITT   82 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~~~   82 (216)
                      ++|+++|.+|+|||||+|.|++.......  .+..+.........+++  ..+.++||||......           ...
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            47999999999999999999987654222  23344455555556666  5789999999643321           112


Q ss_pred             cccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCCCCCCc-----cChHHHHHHHHHhCCeE
Q 027949           83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD--NVNKILVGNKADMDESKRA-----VPTSKGQALADEYGIKF  155 (216)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~Dl~~~~~~-----~~~~~~~~~~~~~~~~~  155 (216)
                      ......|++|+|+++.+. +- .....+..+....+.  -.++++|+|+.|.......     .....++.+....+-.+
T Consensus        79 ~~~~g~~~illVi~~~~~-t~-~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~  156 (196)
T cd01852          79 LSAPGPHAFLLVVPLGRF-TE-EEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY  156 (196)
T ss_pred             hcCCCCEEEEEEEECCCc-CH-HHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence            234678999999998762 21 112233333333221  2578899999995332110     11244556666666566


Q ss_pred             EEEec-----CCCCCHHHHHHHHHHHHHH
Q 027949          156 FETSA-----KTNLNVEEVFFSIARDIKQ  179 (216)
Q Consensus       156 ~~~Sa-----~~~~gi~~l~~~l~~~i~~  179 (216)
                      +..+.     ..+.++++|++.|.+.+.+
T Consensus       157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         157 VAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            55554     4567788888888777765

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.63  E-value=2e-14  Score=117.80  Aligned_cols=180  Identities=18%  Similarity=0.159  Sum_probs=125.6

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ...-|.|+|.-.-|||||+..|.+..+......+.+...-...+..... ..++|.||||+..|..+...-..-.|++++
T Consensus       152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL  230 (683)
T KOG1145|consen  152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIVVL  230 (683)
T ss_pred             CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence            3356889999999999999999998887666666665555555555422 678899999999999999888888999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHH-------HHhC--CeEEEEecCCCC
Q 027949           94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALA-------DEYG--IKFFETSAKTNL  164 (216)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-------~~~~--~~~~~~Sa~~~~  164 (216)
                      |+.+.|.-.-+.+    ..+......+.|++|.+||+|.+++    +++....-.       ..+|  ++++++||++|+
T Consensus       231 VVAadDGVmpQT~----EaIkhAk~A~VpiVvAinKiDkp~a----~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~  302 (683)
T KOG1145|consen  231 VVAADDGVMPQTL----EAIKHAKSANVPIVVAINKIDKPGA----NPEKVKRELLSQGIVVEDLGGDVQVIPISALTGE  302 (683)
T ss_pred             EEEccCCccHhHH----HHHHHHHhcCCCEEEEEeccCCCCC----CHHHHHHHHHHcCccHHHcCCceeEEEeecccCC
Confidence            9999885322222    2233333448999999999997643    233322222       2344  689999999999


Q ss_pred             CHHHHHHHHHHHHHHHhhcccCCCCCccccccCCCCcc
Q 027949          165 NVEEVFFSIARDIKQRLADTDSRAEPQTIKINQPDQAG  202 (216)
Q Consensus       165 gi~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  202 (216)
                      |++.|-+.++-...-+--+-++...-++..|++...++
T Consensus       303 nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg  340 (683)
T KOG1145|consen  303 NLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKG  340 (683)
T ss_pred             ChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeecCC
Confidence            99999888665444333333344444566666554433

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.63  E-value=4e-15  Score=120.53  Aligned_cols=166  Identities=21%  Similarity=0.212  Sum_probs=113.2

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCccc-cccc--------cccc
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRTI--------TTAY   84 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~--------~~~~   84 (216)
                      -++|+++|.||+|||||+|.|.+.+.. ....++++.+-....++++|  +.+.+.||+|..+ ....        ....
T Consensus       268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~  345 (531)
T KOG1191|consen  268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARKR  345 (531)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHHH
Confidence            389999999999999999999998765 56667888888888888888  8889999999655 1111        2234


Q ss_pred             cccccEEEEEEeC--CCHhHHHHHHHHHHHHHHhc------CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC---C
Q 027949           85 YRGAMGILLVYDV--TDESSFNNIRNWIRNIEQHA------SDNVNKILVGNKADMDESKRAVPTSKGQALADEYG---I  153 (216)
Q Consensus        85 ~~~~d~~i~v~d~--~~~~~~~~~~~~~~~~~~~~------~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~  153 (216)
                      +..+|++++|+|+  ++.++...+...+.....-.      ....|++++.||.|+.......... ...+....+   .
T Consensus       346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~-~~~~~~~~~~~~~  424 (531)
T KOG1191|consen  346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKI-PVVYPSAEGRSVF  424 (531)
T ss_pred             HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCC-ceeccccccCccc
Confidence            5679999999999  33333333333333332211      1247899999999986532211111 111111111   2


Q ss_pred             e-EEEEecCCCCCHHHHHHHHHHHHHHHhhc
Q 027949          154 K-FFETSAKTNLNVEEVFFSIARDIKQRLAD  183 (216)
Q Consensus       154 ~-~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~  183 (216)
                      + ..++|+++++|++.|...|.+.+...-..
T Consensus       425 ~i~~~vs~~tkeg~~~L~~all~~~~~~~~~  455 (531)
T KOG1191|consen  425 PIVVEVSCTTKEGCERLSTALLNIVERLVVS  455 (531)
T ss_pred             ceEEEeeechhhhHHHHHHHHHHHHHHhhcC
Confidence            3 45599999999999999999888876543

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.62  E-value=3.3e-15  Score=113.21  Aligned_cols=162  Identities=20%  Similarity=0.298  Sum_probs=107.6

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEE-EEECCeEEEEEEEeCCCccc-------ccccccccc
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRT-IELDGKRIKLQIWDTAGQER-------FRTITTAYY   85 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~   85 (216)
                      ..++|+++|..|+||||++|+|+..+......-..+.+..... ..+++  -.+.|||+||...       |+.....++
T Consensus        38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d~l  115 (296)
T COG3596          38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRDYL  115 (296)
T ss_pred             CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHHHh
Confidence            4499999999999999999999976654333223333332222 23344  5789999999544       677788888


Q ss_pred             ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC------CccChHHHHHHHHH--------h
Q 027949           86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK------RAVPTSKGQALADE--------Y  151 (216)
Q Consensus        86 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------~~~~~~~~~~~~~~--------~  151 (216)
                      ...|.++++.++.++.--....-| ..+.... .+.++++++|.+|.....      .......++.+..+        .
T Consensus       116 ~~~DLvL~l~~~~draL~~d~~f~-~dVi~~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~  193 (296)
T COG3596         116 PKLDLVLWLIKADDRALGTDEDFL-RDVIILG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLF  193 (296)
T ss_pred             hhccEEEEeccCCCccccCCHHHH-HHHHHhc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999887533332223 3332222 248999999999963221      11111222222211        1


Q ss_pred             C--CeEEEEecCCCCCHHHHHHHHHHHHHH
Q 027949          152 G--IKFFETSAKTNLNVEEVFFSIARDIKQ  179 (216)
Q Consensus       152 ~--~~~~~~Sa~~~~gi~~l~~~l~~~i~~  179 (216)
                      .  -+++.++.+.+.|++.+...+++.+..
T Consensus       194 q~V~pV~~~~~r~~wgl~~l~~ali~~lp~  223 (296)
T COG3596         194 QEVKPVVAVSGRLPWGLKELVRALITALPV  223 (296)
T ss_pred             hhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence            1  388888999999999999999998874

>PLN03127 Elongation factor Tu; Provisional

Probab=99.62  E-value=1.6e-14  Score=120.04  Aligned_cols=159  Identities=16%  Similarity=0.097  Sum_probs=97.0

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcC------CC----------CCccccceeeeEEEEEEEECCeEEEEEEEeCCCcc
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDG------SF----------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   75 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (216)
                      ....++|+++|..++|||||+++|.+.      ..          ..+..++.+.+.....+..++  ..+.++||||+.
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~~iDtPGh~  135 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAK--RHYAHVDCPGHA  135 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCC--eEEEEEECCCcc
Confidence            345699999999999999999999732      10          122234555554444444444  678999999998


Q ss_pred             ccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcE-EEEEeCCCCCCCCCcc--ChHHHHHHHHHh-
Q 027949           76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK-ILVGNKADMDESKRAV--PTSKGQALADEY-  151 (216)
Q Consensus        76 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~-  151 (216)
                      .|-.........+|++++|+|+.+.... .....+..+...   +.|. ++++||+|+.+.....  ...++..+.... 
T Consensus       136 ~f~~~~~~g~~~aD~allVVda~~g~~~-qt~e~l~~~~~~---gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~  211 (447)
T PLN03127        136 DYVKNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQV---GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYK  211 (447)
T ss_pred             chHHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHHHc---CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhC
Confidence            7655555555679999999999764321 222222223222   6784 6789999986421110  112233333332 


Q ss_pred             ----CCeEEEEecC---CCCC-------HHHHHHHHHHH
Q 027949          152 ----GIKFFETSAK---TNLN-------VEEVFFSIARD  176 (216)
Q Consensus       152 ----~~~~~~~Sa~---~~~g-------i~~l~~~l~~~  176 (216)
                          .++++++|+.   +|.|       +..|+++|.+.
T Consensus       212 ~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~  250 (447)
T PLN03127        212 FPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEY  250 (447)
T ss_pred             CCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHh
Confidence                2678888876   4444       55555555544

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.61  E-value=3.8e-15  Score=129.25  Aligned_cols=151  Identities=22%  Similarity=0.172  Sum_probs=94.7

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCc---------------------------------cccceeeeEEEEEEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTS---------------------------------FITTIGIDFKIRTIEL   59 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~   59 (216)
                      ...++|+++|.+++|||||+++|+...-...                                 ...+.+.+.....+..
T Consensus        22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~  101 (632)
T PRK05506         22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT  101 (632)
T ss_pred             CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence            3458999999999999999999986431100                                 0112233333344444


Q ss_pred             CCeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc
Q 027949           60 DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAV  139 (216)
Q Consensus        60 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~  139 (216)
                      ++  ..+.|+||||++.|.......+..+|++++|+|+.....-.. ...+..+....  ..+++|++||+|+.+.....
T Consensus       102 ~~--~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~~~~~--~~~iivvvNK~D~~~~~~~~  176 (632)
T PRK05506        102 PK--RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIASLLG--IRHVVLAVNKMDLVDYDQEV  176 (632)
T ss_pred             CC--ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHHHHhC--CCeEEEEEEecccccchhHH
Confidence            44  578899999998775545556788999999999976432111 11111122221  25788899999986421111


Q ss_pred             C---hHHHHHHHHHhC---CeEEEEecCCCCCHHH
Q 027949          140 P---TSKGQALADEYG---IKFFETSAKTNLNVEE  168 (216)
Q Consensus       140 ~---~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~  168 (216)
                      .   ..++..+....+   ++++++||++|.|+++
T Consensus       177 ~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        177 FDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            1   122333444444   4699999999999885

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.61  E-value=6.6e-15  Score=122.23  Aligned_cols=164  Identities=15%  Similarity=0.140  Sum_probs=102.1

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCC---CccccceeeeEEEEEE---------------EEC-C------------
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFT---TSFITTIGIDFKIRTI---------------ELD-G------------   61 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~---------------~~~-~------------   61 (216)
                      ...++|.++|.-..|||||+.+|++....   .+...+.+.+.-....               ... +            
T Consensus        32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (460)
T PTZ00327         32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH  111 (460)
T ss_pred             CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence            45699999999999999999999975432   1221222211111100               000 0            


Q ss_pred             ---eEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc
Q 027949           62 ---KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA  138 (216)
Q Consensus        62 ---~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  138 (216)
                         ....+.++|+||++.|-......+..+|++++|+|+.++.........+..+....  -.++++|+||+|+.+....
T Consensus       112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lg--i~~iIVvlNKiDlv~~~~~  189 (460)
T PTZ00327        112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLVKEAQA  189 (460)
T ss_pred             cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcC--CCcEEEEEecccccCHHHH
Confidence               01368899999998886666666778999999999986411112222222222221  2468899999998642211


Q ss_pred             -cChHHHHHHHHH---hCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 027949          139 -VPTSKGQALADE---YGIKFFETSAKTNLNVEEVFFSIARDIK  178 (216)
Q Consensus       139 -~~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  178 (216)
                       ...+++..+...   ...+++++||++|.|++.|++.|.+.+.
T Consensus       190 ~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp  233 (460)
T PTZ00327        190 QDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP  233 (460)
T ss_pred             HHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence             112233333322   2479999999999999999998886543

>TIGR00503 prfC peptide chain release factor 3

Probab=99.60  E-value=1.9e-14  Score=121.65  Aligned_cols=115  Identities=17%  Similarity=0.155  Sum_probs=78.2

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCC-CCC---------------------ccccceeeeEEEEEEEECCeEEEEEEEe
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGS-FTT---------------------SFITTIGIDFKIRTIELDGKRIKLQIWD   70 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~-~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D   70 (216)
                      ...-+|+|+|.+++|||||+++|+... ...                     +...+.+.......+.+++  +.+.+||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~--~~inliD   86 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRD--CLVNLLD   86 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCC--eEEEEEE
Confidence            455799999999999999999986311 110                     0011122223334445555  8899999


Q ss_pred             CCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027949           71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD  133 (216)
Q Consensus        71 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  133 (216)
                      |||+..|.......++.+|++|+|+|+.+.-. .....++.....   .+.|+++++||+|+.
T Consensus        87 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~  145 (527)
T TIGR00503        87 TPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRD  145 (527)
T ss_pred             CCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECcccc
Confidence            99998877766777889999999999987421 222333333322   368999999999984

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PRK12739 elongation factor G; Reviewed

Probab=99.60  E-value=1.9e-14  Score=125.99  Aligned_cols=117  Identities=19%  Similarity=0.131  Sum_probs=85.8

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCC--------C----------CccccceeeeEEEEEEEECCeEEEEEEEeCCC
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSF--------T----------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAG   73 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~--------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   73 (216)
                      .+...+|+|+|..++|||||+++|+...-        .          .+...+.+.+.....+.+++  ..+.++||||
T Consensus         5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG   82 (691)
T PRK12739          5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPG   82 (691)
T ss_pred             ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCC
Confidence            44568899999999999999999975210        0          11234556666677777877  7889999999


Q ss_pred             ccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949           74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE  134 (216)
Q Consensus        74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (216)
                      +..+...+...++.+|++|+|+|+.+....... ..+..+..   .+.|+++++||+|+.+
T Consensus        83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~---~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK---YGVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence            987777788888999999999999876432222 22223322   2689999999999864

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.60  E-value=1.9e-15  Score=109.87  Aligned_cols=116  Identities=23%  Similarity=0.440  Sum_probs=71.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEE-CCeEEEEEEEeCCCcccccccccc---ccccccEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTA---YYRGAMGI   91 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~---~~~~~d~~   91 (216)
                      -.|+++|+.|+|||+|+.+|..+.......+.   +... .+.+ ......+.++|+||+.+.+.....   +...+-++
T Consensus         4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~---e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I   79 (181)
T PF09439_consen    4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM---ENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI   79 (181)
T ss_dssp             -EEEEE-STTSSHHHHHHHHHHSS---B---S---SEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred             ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc---cCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence            46899999999999999999998654433332   1211 2222 122246789999999987764444   37789999


Q ss_pred             EEEEeCCC-HhHHHHHHHHHHHHHHh---cCCCCcEEEEEeCCCCCCC
Q 027949           92 LLVYDVTD-ESSFNNIRNWIRNIEQH---ASDNVNKILVGNKADMDES  135 (216)
Q Consensus        92 i~v~d~~~-~~~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~Dl~~~  135 (216)
                      |||+|++. +..+..+.+++..+...   .....|++|+.||.|+..+
T Consensus        80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen   80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA  127 (181)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred             EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence            99999974 44555555544443322   2357999999999998653

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.58  E-value=2.5e-14  Score=125.28  Aligned_cols=117  Identities=19%  Similarity=0.118  Sum_probs=85.5

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCC------------------CccccceeeeEEEEEEEECCeEEEEEEEeCCC
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFT------------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAG   73 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   73 (216)
                      .+..-+|+|+|.+++|||||+++|+...-.                  .+...+.+.+.....+.+++  ..+.+|||||
T Consensus         7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG   84 (689)
T TIGR00484         7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPG   84 (689)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCC
Confidence            445679999999999999999999742110                  01123455556666777777  7889999999


Q ss_pred             ccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949           74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE  134 (216)
Q Consensus        74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (216)
                      +..+...+...++.+|++++|+|+.+....... .++..+..   .+.|+++++||+|+..
T Consensus        85 ~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~  141 (689)
T TIGR00484        85 HVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR---YEVPRIAFVNKMDKTG  141 (689)
T ss_pred             CcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence            988777778888999999999999876443332 22233332   2689999999999865

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>cd00066 G-alpha G protein alpha subunit

Probab=99.58  E-value=1.2e-13  Score=110.42  Aligned_cols=125  Identities=19%  Similarity=0.196  Sum_probs=89.8

Q ss_pred             EEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCH----------hHHHHHHHHHHHHHHhc-CCCCcE
Q 027949           55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----------SSFNNIRNWIRNIEQHA-SDNVNK  123 (216)
Q Consensus        55 ~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~-~~~~p~  123 (216)
                      ..+.+++  +.+.+||++|+...+..|..++.+++++|||+|+++.          ..+.+....+..+.... -.+.|+
T Consensus       154 ~~f~~~~--~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pi  231 (317)
T cd00066         154 TKFTIKN--LKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSI  231 (317)
T ss_pred             EEEEecc--eEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCE
Confidence            3444454  7899999999999999999999999999999999874          34455445554444332 147999


Q ss_pred             EEEEeCCCCCCC--------------CC-ccChHHHHHHHHH----------hCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 027949          124 ILVGNKADMDES--------------KR-AVPTSKGQALADE----------YGIKFFETSAKTNLNVEEVFFSIARDIK  178 (216)
Q Consensus       124 ivv~nK~Dl~~~--------------~~-~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  178 (216)
                      +|++||.|+...              .. ..+.+.+..+...          ..+-...++|.+..++..+|+.+.+.++
T Consensus       232 ll~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~  311 (317)
T cd00066         232 ILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIIL  311 (317)
T ss_pred             EEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHH
Confidence            999999996221              11 2234444444322          1255678899999999999999999988


Q ss_pred             HHh
Q 027949          179 QRL  181 (216)
Q Consensus       179 ~~~  181 (216)
                      ...
T Consensus       312 ~~~  314 (317)
T cd00066         312 QNN  314 (317)
T ss_pred             HHH
Confidence            764

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.57  E-value=5.9e-14  Score=108.55  Aligned_cols=161  Identities=15%  Similarity=0.293  Sum_probs=118.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCe--EEEEEEEeCCCcccccccccccccc----cc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK--RIKLQIWDTAGQERFRTITTAYYRG----AM   89 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~----~d   89 (216)
                      -+|+|+|..++||||||.+|.+.+   ...++.+.++.+..+.-+.+  ...+.+|-..|+.-+..+....+..    -.
T Consensus        53 k~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aet  129 (473)
T KOG3905|consen   53 KNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAET  129 (473)
T ss_pred             CeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccce
Confidence            578999999999999999999876   45566777777776655332  3678899888876555544433332    24


Q ss_pred             EEEEEEeCCCHhH-HHHHHHHHHHHHHhc---------------------------------------------------
Q 027949           90 GILLVYDVTDESS-FNNIRNWIRNIEQHA---------------------------------------------------  117 (216)
Q Consensus        90 ~~i~v~d~~~~~~-~~~~~~~~~~~~~~~---------------------------------------------------  117 (216)
                      ++|++.|.++|-. ++.+..|...+.+..                                                   
T Consensus       130 lviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~l  209 (473)
T KOG3905|consen  130 LVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVL  209 (473)
T ss_pred             EEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccc
Confidence            6888999999844 445555654433210                                                   


Q ss_pred             ----------CCCCcEEEEEeCCCCCC----------CCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Q 027949          118 ----------SDNVNKILVGNKADMDE----------SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI  177 (216)
Q Consensus       118 ----------~~~~p~ivv~nK~Dl~~----------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  177 (216)
                                ..++|++||.+|+|...          +........++.||..+|..++.+|++...+++-+..+|++.+
T Consensus       210 lPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~  289 (473)
T KOG3905|consen  210 LPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRS  289 (473)
T ss_pred             cccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHh
Confidence                      01699999999999721          2233455678899999999999999999999999999999887


Q ss_pred             HH
Q 027949          178 KQ  179 (216)
Q Consensus       178 ~~  179 (216)
                      +-
T Consensus       290 yG  291 (473)
T KOG3905|consen  290 YG  291 (473)
T ss_pred             cC
Confidence            64

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.57  E-value=1.3e-13  Score=112.83  Aligned_cols=83  Identities=23%  Similarity=0.287  Sum_probs=60.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEE---------------------C-CeEEEEEEEeCCC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL---------------------D-GKRIKLQIWDTAG   73 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~i~D~~G   73 (216)
                      ++|+++|.||+|||||+|+|++..+.....+..+.+.....+..                     + .....+.+||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            68999999999999999999998765444455555555544331                     1 1236789999999


Q ss_pred             cc----ccccccccc---cccccEEEEEEeCC
Q 027949           74 QE----RFRTITTAY---YRGAMGILLVYDVT   98 (216)
Q Consensus        74 ~~----~~~~~~~~~---~~~~d~~i~v~d~~   98 (216)
                      ..    ....+...+   ++++|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            52    333344455   78999999999997

>PRK00007 elongation factor G; Reviewed

Probab=99.56  E-value=1.1e-13  Score=121.14  Aligned_cols=117  Identities=18%  Similarity=0.120  Sum_probs=83.5

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCC--CC----------------CccccceeeeEEEEEEEECCeEEEEEEEeCCC
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGS--FT----------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAG   73 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   73 (216)
                      .+...+|+|+|.+++|||||+++|+...  ..                .+...+.+.+.....+.+.+  ..++++||||
T Consensus         7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG   84 (693)
T PRK00007          7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPG   84 (693)
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCC
Confidence            4556799999999999999999997411  10                01234455666666777776  6889999999


Q ss_pred             ccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949           74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE  134 (216)
Q Consensus        74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (216)
                      +..+.......++.+|++++|+|+...-...... .+..+...   +.|.++++||+|+.+
T Consensus        85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~-~~~~~~~~---~~p~iv~vNK~D~~~  141 (693)
T PRK00007         85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSET-VWRQADKY---KVPRIAFVNKMDRTG  141 (693)
T ss_pred             cHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHH-HHHHHHHc---CCCEEEEEECCCCCC
Confidence            8777666666778899999999987654333322 22233332   689999999999853

>smart00275 G_alpha G protein alpha subunit

Probab=99.55  E-value=2.4e-13  Score=109.50  Aligned_cols=127  Identities=19%  Similarity=0.182  Sum_probs=89.9

Q ss_pred             EEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCH----------hHHHHHHHHHHHHHHh-cCCCC
Q 027949           53 KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----------SSFNNIRNWIRNIEQH-ASDNV  121 (216)
Q Consensus        53 ~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~-~~~~~  121 (216)
                      ....+.+++  +.+.+||.+|+...+..|..++.+++++|||+|+++.          ..+.+....+..+... .-.+.
T Consensus       175 ~~~~f~~~~--~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~  252 (342)
T smart00275      175 QETAFIVKK--LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANT  252 (342)
T ss_pred             EEEEEEECC--eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCC
Confidence            333455555  6789999999999999999999999999999999974          3455555555555432 22478


Q ss_pred             cEEEEEeCCCCCCC--------------CCccChHHHHHHHHH-----------hCCeEEEEecCCCCCHHHHHHHHHHH
Q 027949          122 NKILVGNKADMDES--------------KRAVPTSKGQALADE-----------YGIKFFETSAKTNLNVEEVFFSIARD  176 (216)
Q Consensus       122 p~ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~gi~~l~~~l~~~  176 (216)
                      |++|++||.|+...              ....+.+.+..+...           ..+-.+.++|.+..++..+|+.+.+.
T Consensus       253 piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~  332 (342)
T smart00275      253 SIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDI  332 (342)
T ss_pred             cEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHH
Confidence            99999999997221              111233333333321           12456788899999999999999998


Q ss_pred             HHHHh
Q 027949          177 IKQRL  181 (216)
Q Consensus       177 i~~~~  181 (216)
                      +++..
T Consensus       333 I~~~~  337 (342)
T smart00275      333 ILQRN  337 (342)
T ss_pred             HHHHH
Confidence            88765

Subunit of G proteins that contains the guanine nucleotide binding site

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.55  E-value=6.4e-14  Score=111.75  Aligned_cols=154  Identities=20%  Similarity=0.148  Sum_probs=100.0

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcC-------------------------------CCCCccccceeeeEEEEEEEECC
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDG-------------------------------SFTTSFITTIGIDFKIRTIELDG   61 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~   61 (216)
                      ...++++|+|...+|||||+-+|+..                               ....+...+.+++.....+..+.
T Consensus         5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k   84 (428)
T COG5256           5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK   84 (428)
T ss_pred             CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence            44599999999999999999998651                               11123344555555555554444


Q ss_pred             eEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHH-----HHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027949           62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI-----RNWIRNIEQHASDNVNKILVGNKADMDESK  136 (216)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-----~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  136 (216)
                        +.++|+|+||+..|-...-.-..++|+.|+|+|+.+.+.-..+     ......+..... -..++|++||+|+.+-.
T Consensus        85 --~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-i~~lIVavNKMD~v~wd  161 (428)
T COG5256          85 --YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-IKQLIVAVNKMDLVSWD  161 (428)
T ss_pred             --ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-CceEEEEEEcccccccC
Confidence              7899999999887777777777899999999999887421111     111112222221 34567779999986511


Q ss_pred             Cc---cChHHHHHHHHHhC-----CeEEEEecCCCCCHHHH
Q 027949          137 RA---VPTSKGQALADEYG-----IKFFETSAKTNLNVEEV  169 (216)
Q Consensus       137 ~~---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l  169 (216)
                      ..   ....++..+.+..|     ++|+++|+..|+|+.+.
T Consensus       162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~  202 (428)
T COG5256         162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK  202 (428)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence            11   11223334444444     57999999999987653

>PRK09866 hypothetical protein; Provisional

Probab=99.55  E-value=1.9e-13  Score=115.20  Aligned_cols=109  Identities=18%  Similarity=0.165  Sum_probs=71.2

Q ss_pred             EEEEEEeCCCcccc-----ccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc
Q 027949           64 IKLQIWDTAGQERF-----RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA  138 (216)
Q Consensus        64 ~~~~i~D~~G~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  138 (216)
                      ..+.|+||||....     .......+..+|+++||+|+.+..+..+ ......+... ....|+++|+||+|+.+. ..
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~-~K~~PVILVVNKIDl~dr-ee  306 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV-GQSVPLYVLVNKFDQQDR-NS  306 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc-CCCCCEEEEEEcccCCCc-cc
Confidence            46788999997542     1123446889999999999987433222 1223333332 223599999999998532 22


Q ss_pred             cChHHHHHHHHHh----C---CeEEEEecCCCCCHHHHHHHHHH
Q 027949          139 VPTSKGQALADEY----G---IKFFETSAKTNLNVEEVFFSIAR  175 (216)
Q Consensus       139 ~~~~~~~~~~~~~----~---~~~~~~Sa~~~~gi~~l~~~l~~  175 (216)
                      ...+.+..+....    .   ..+|++||+.|.|++++++.|..
T Consensus       307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            2344444443211    2   37999999999999999998876

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.54  E-value=2.2e-14  Score=95.78  Aligned_cols=136  Identities=26%  Similarity=0.264  Sum_probs=95.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcc----ccccccccccccccEEE
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----RFRTITTAYYRGAMGIL   92 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~~~d~~i   92 (216)
                      |++++|..|+|||||.+.+.+....  +..+..       ++++..    -.+||||.-    .+..........+|+++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQA-------ve~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~   69 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQA-------VEFNDK----GDIDTPGEYFEHPRWYHALITTLQDADVII   69 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhh--hcccce-------eeccCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence            7899999999999999999987643  222222       223221    135999943    22222333446799999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEecCCCCCHHHHHH
Q 027949           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVEEVFF  171 (216)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~  171 (216)
                      +|-+++++++.-.     ..+...  ...|+|=|++|+||.+   ....+..+.+..+.|. ++|++|+.++.|+++++.
T Consensus        70 ~v~~and~~s~f~-----p~f~~~--~~k~vIgvVTK~DLae---d~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~  139 (148)
T COG4917          70 YVHAANDPESRFP-----PGFLDI--GVKKVIGVVTKADLAE---DADISLVKRWLREAGAEPIFETSAVDNQGVEELVD  139 (148)
T ss_pred             eeecccCccccCC-----cccccc--cccceEEEEecccccc---hHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHH
Confidence            9999999864211     111121  2467888999999964   3456677788888886 899999999999999999


Q ss_pred             HHHH
Q 027949          172 SIAR  175 (216)
Q Consensus       172 ~l~~  175 (216)
                      +|..
T Consensus       140 ~L~~  143 (148)
T COG4917         140 YLAS  143 (148)
T ss_pred             HHHh
Confidence            8864

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=7.7e-14  Score=101.79  Aligned_cols=155  Identities=21%  Similarity=0.295  Sum_probs=103.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccc---cccEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR---GAMGIL   92 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---~~d~~i   92 (216)
                      -.|+++|+.+||||+|+-+|..+.......   .++.....+...+  ..++++|.||+.+.+.....+++   .+-+++
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tvt---Siepn~a~~r~gs--~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV  113 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVT---SIEPNEATYRLGS--ENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV  113 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcCCccCeee---eeccceeeEeecC--cceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence            468999999999999999999885544332   2445555555555  34788999999987776666665   688999


Q ss_pred             EEEeCCC-HhHHHHHHHH-HHHHHHh--cCCCCcEEEEEeCCCCCCCCCccC-----hHHH-------------------
Q 027949           93 LVYDVTD-ESSFNNIRNW-IRNIEQH--ASDNVNKILVGNKADMDESKRAVP-----TSKG-------------------  144 (216)
Q Consensus        93 ~v~d~~~-~~~~~~~~~~-~~~~~~~--~~~~~p~ivv~nK~Dl~~~~~~~~-----~~~~-------------------  144 (216)
                      ||+|... .....++..+ +..+...  .....|++++.||.|+.-+..+.-     ..++                   
T Consensus       114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~  193 (238)
T KOG0090|consen  114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIA  193 (238)
T ss_pred             EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence            9999753 3334444443 3434333  346789999999999854321100     0000                   


Q ss_pred             ---------HH--HHH--HhCCeEEEEecCCCCCHHHHHHHHHHH
Q 027949          145 ---------QA--LAD--EYGIKFFETSAKTNLNVEEVFFSIARD  176 (216)
Q Consensus       145 ---------~~--~~~--~~~~~~~~~Sa~~~~gi~~l~~~l~~~  176 (216)
                               .+  |..  ...+.+.++|++++ +++++-+||.+.
T Consensus       194 ~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  194 KDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             ccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence                     00  111  12256889999988 999999999765

>PRK12740 elongation factor G; Reviewed

Probab=99.53  E-value=9.9e-14  Score=121.43  Aligned_cols=108  Identities=25%  Similarity=0.245  Sum_probs=77.2

Q ss_pred             EcCCCCcHHHHHHHHHcCCCC------------------CccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccc
Q 027949           21 IGDSGVGKSCLLLRFSDGSFT------------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITT   82 (216)
Q Consensus        21 ~G~~~~GKStli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~   82 (216)
                      +|..++|||||+++|+...-.                  .+...+.+.......+.+++  +.+.+|||||+..+...+.
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~   78 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE   78 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence            599999999999999543210                  01123344455556667766  7899999999987777777


Q ss_pred             cccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949           83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE  134 (216)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (216)
                      ..++.+|++++|+|++..........| ..+..   .+.|+++|+||+|+..
T Consensus        79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~~  126 (668)
T PRK12740         79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRAG  126 (668)
T ss_pred             HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCCC
Confidence            888899999999999886554433222 22322   3689999999999853

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.52  E-value=5.5e-14  Score=106.38  Aligned_cols=174  Identities=17%  Similarity=0.169  Sum_probs=99.8

Q ss_pred             CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccc-------cceeeeEEEEEE-------------------------
Q 027949           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFI-------TTIGIDFKIRTI-------------------------   57 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-------~~~~~~~~~~~~-------------------------   57 (216)
                      ......+-|+|+|+.|+|||||+++|...-......       |....-.+...+                         
T Consensus        14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~T   93 (366)
T KOG1532|consen   14 GAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVT   93 (366)
T ss_pred             ccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhh
Confidence            345566899999999999999999997632221111       000000000000                         


Q ss_pred             ----------------EECCeEEEEEEEeCCCcccc------ccccccccc--cccEEEEEEeCCC---HhHHHHHHHHH
Q 027949           58 ----------------ELDGKRIKLQIWDTAGQERF------RTITTAYYR--GAMGILLVYDVTD---ESSFNNIRNWI  110 (216)
Q Consensus        58 ----------------~~~~~~~~~~i~D~~G~~~~------~~~~~~~~~--~~d~~i~v~d~~~---~~~~~~~~~~~  110 (216)
                                      ......+...++||||+-+.      ..+....+.  .-.+++||+|..+   |.+|..-.-+-
T Consensus        94 sLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYA  173 (366)
T KOG1532|consen   94 SLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYA  173 (366)
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHH
Confidence                            00122356889999997431      111111111  2346888888654   44454433333


Q ss_pred             HHHHHhcCCCCcEEEEEeCCCCCCCCCc-cChHHHHHH---HH--------------------H-hCCeEEEEecCCCCC
Q 027949          111 RNIEQHASDNVNKILVGNKADMDESKRA-VPTSKGQAL---AD--------------------E-YGIKFFETSAKTNLN  165 (216)
Q Consensus       111 ~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~---~~--------------------~-~~~~~~~~Sa~~~~g  165 (216)
                      ..+.-  ....|++++.||+|+.+.... ....+...|   .+                    . .++..+.+|+.+|+|
T Consensus       174 cSily--ktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G  251 (366)
T KOG1532|consen  174 CSILY--KTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEG  251 (366)
T ss_pred             HHHHH--hccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCc
Confidence            33333  337999999999998653211 011111111   11                    1 136789999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccc
Q 027949          166 VEEVFFSIARDIKQRLADTD  185 (216)
Q Consensus       166 i~~l~~~l~~~i~~~~~~~~  185 (216)
                      ++++|..+-+.+.++...-.
T Consensus       252 ~ddf~~av~~~vdEy~~~yk  271 (366)
T KOG1532|consen  252 FDDFFTAVDESVDEYEEEYK  271 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            99999999988877655433

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.51  E-value=6.5e-14  Score=113.75  Aligned_cols=168  Identities=19%  Similarity=0.151  Sum_probs=118.3

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc----cc-----cccc
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT----IT-----TAYY   85 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----~~-----~~~~   85 (216)
                      .-.++|+|.|++|||||++.+........+.++++.......+.+..  ..+++.||||.-....    ..     ....
T Consensus       168 trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykY--lrwQViDTPGILD~plEdrN~IEmqsITALA  245 (620)
T KOG1490|consen  168 TRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKY--LRWQVIDTPGILDRPEEDRNIIEMQIITALA  245 (620)
T ss_pred             cCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhe--eeeeecCCccccCcchhhhhHHHHHHHHHHH
Confidence            35789999999999999999999988877777777667777766665  6678889999532111    11     1111


Q ss_pred             ccccEEEEEEeCCCHh--HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc-ChHH-HHHHHHHhCCeEEEEecC
Q 027949           86 RGAMGILLVYDVTDES--SFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAV-PTSK-GQALADEYGIKFFETSAK  161 (216)
Q Consensus        86 ~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~-~~~~~~~~~~~~~~~Sa~  161 (216)
                      +--.+++|+.|++...  +...-..++..+...+. +.|+|+|+||+|+...+... ..++ +..+...-+++++.+|+.
T Consensus       246 HLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~  324 (620)
T KOG1490|consen  246 HLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCV  324 (620)
T ss_pred             HhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-CCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEeccc
Confidence            2234689999998754  44555567777777665 78999999999975433221 1222 333333444899999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhhccc
Q 027949          162 TNLNVEEVFFSIARDIKQRLADTD  185 (216)
Q Consensus       162 ~~~gi~~l~~~l~~~i~~~~~~~~  185 (216)
                      +.+|+-++.....+.++..+-+..
T Consensus       325 ~eegVm~Vrt~ACe~LLa~RVE~K  348 (620)
T KOG1490|consen  325 QEEGVMDVRTTACEALLAARVEQK  348 (620)
T ss_pred             chhceeeHHHHHHHHHHHHHHHHH
Confidence            999999998888877777665543

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.50  E-value=7.9e-13  Score=109.75  Aligned_cols=162  Identities=16%  Similarity=0.307  Sum_probs=115.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECC--eEEEEEEEeCCCcccccccccccccc----cc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG--KRIKLQIWDTAGQERFRTITTAYYRG----AM   89 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~----~d   89 (216)
                      -.|+|+|..++|||||+.+|.+.+   ...++.+.+|.+..+.-++  ....+.+|...|...+..+....+..    --
T Consensus        26 k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t  102 (472)
T PF05783_consen   26 KSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNT  102 (472)
T ss_pred             ceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccce
Confidence            578999999999999999998654   3446677778777765532  23578999998876666655444432    24


Q ss_pred             EEEEEEeCCCHhHHH-HHHHHHHHHHHh-------------------------------c--------------------
Q 027949           90 GILLVYDVTDESSFN-NIRNWIRNIEQH-------------------------------A--------------------  117 (216)
Q Consensus        90 ~~i~v~d~~~~~~~~-~~~~~~~~~~~~-------------------------------~--------------------  117 (216)
                      ++|+|+|.+.|..+. .+..|+..+...                               .                    
T Consensus       103 ~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~  182 (472)
T PF05783_consen  103 LVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESV  182 (472)
T ss_pred             EEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccc
Confidence            688999999986543 444444332210                               0                    


Q ss_pred             -----------CCCCcEEEEEeCCCCCC----C------CCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHH
Q 027949          118 -----------SDNVNKILVGNKADMDE----S------KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARD  176 (216)
Q Consensus       118 -----------~~~~p~ivv~nK~Dl~~----~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  176 (216)
                                 ..++|++||++|+|...    +      ........++.||..+|+.+|.||++...+++-|+.+|.+.
T Consensus       183 ~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~  262 (472)
T PF05783_consen  183 LLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHR  262 (472)
T ss_pred             cCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHH
Confidence                       01589999999999621    1      11234456888899999999999999999999999998887


Q ss_pred             HHHH
Q 027949          177 IKQR  180 (216)
Q Consensus       177 i~~~  180 (216)
                      ++..
T Consensus       263 l~~~  266 (472)
T PF05783_consen  263 LYGF  266 (472)
T ss_pred             hccC
Confidence            7654

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.49  E-value=7.2e-13  Score=106.98  Aligned_cols=158  Identities=20%  Similarity=0.201  Sum_probs=110.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCC----------------CccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFT----------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT   79 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   79 (216)
                      =+|+++-.-.-|||||+..|+.+.-.                .+...+.++--...-+.|++  +.++|+||||+..|..
T Consensus         6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~--~~INIvDTPGHADFGG   83 (603)
T COG1217           6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNG--TRINIVDTPGHADFGG   83 (603)
T ss_pred             ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCC--eEEEEecCCCcCCccc
Confidence            47899999999999999999875421                11122222222222355666  7899999999999999


Q ss_pred             ccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh-------C
Q 027949           80 ITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEY-------G  152 (216)
Q Consensus        80 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~  152 (216)
                      .....+.-.|++++++|+.+..- .+.+-.++...   ..+.+.|||+||+|-+++....-.++..++...+       +
T Consensus        84 EVERvl~MVDgvlLlVDA~EGpM-PQTrFVlkKAl---~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLd  159 (603)
T COG1217          84 EVERVLSMVDGVLLLVDASEGPM-PQTRFVLKKAL---ALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLD  159 (603)
T ss_pred             hhhhhhhhcceEEEEEEcccCCC-CchhhhHHHHH---HcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCC
Confidence            99999999999999999987432 22222222222   2367889999999988766555556666665444       4


Q ss_pred             CeEEEEecCCC----------CCHHHHHHHHHHHHHH
Q 027949          153 IKFFETSAKTN----------LNVEEVFFSIARDIKQ  179 (216)
Q Consensus       153 ~~~~~~Sa~~~----------~gi~~l~~~l~~~i~~  179 (216)
                      .+++..|++.|          .++.-||+.|++++..
T Consensus       160 FPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~  196 (603)
T COG1217         160 FPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA  196 (603)
T ss_pred             CcEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence            79999999877          3577778777777654

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.48  E-value=1.1e-12  Score=117.38  Aligned_cols=155  Identities=19%  Similarity=0.181  Sum_probs=102.5

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeE----------------EEEEEEeCCCcc
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR----------------IKLQIWDTAGQE   75 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~i~D~~G~~   75 (216)
                      .++..+-++++     ||||+.+|.+.++...-..+.+.+.-...+..+...                -.+.||||||++
T Consensus       463 ~~~~~~~~~~~-----KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe  537 (1049)
T PRK14845        463 HNFIANGILVH-----NTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHE  537 (1049)
T ss_pred             Ccceeeeeecc-----cccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcH
Confidence            34444444444     999999999988876666666655555555443211                127999999999


Q ss_pred             ccccccccccccccEEEEEEeCCC---HhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-c-----------C
Q 027949           76 RFRTITTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA-V-----------P  140 (216)
Q Consensus        76 ~~~~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~-----------~  140 (216)
                      .|..+....+..+|++++|+|+++   +.++..+.    .+..   .+.|+++|+||+|+.+.... .           .
T Consensus       538 ~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~  610 (1049)
T PRK14845        538 AFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQD  610 (1049)
T ss_pred             HHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhH
Confidence            988877777888999999999987   44444332    2222   26899999999998532110 0           0


Q ss_pred             hHHHHHH----------HHHh---------------CCeEEEEecCCCCCHHHHHHHHHHHHH
Q 027949          141 TSKGQAL----------ADEY---------------GIKFFETSAKTNLNVEEVFFSIARDIK  178 (216)
Q Consensus       141 ~~~~~~~----------~~~~---------------~~~~~~~Sa~~~~gi~~l~~~l~~~i~  178 (216)
                      .....++          ....               .++++++||++|+|+++|+.+|.....
T Consensus       611 ~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~  673 (1049)
T PRK14845        611 QHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ  673 (1049)
T ss_pred             HHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence            0000111          0111               268999999999999999988765443

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.47  E-value=1.8e-12  Score=99.89  Aligned_cols=121  Identities=21%  Similarity=0.220  Sum_probs=73.9

Q ss_pred             CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCc-cccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc---c------
Q 027949           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTS-FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT---I------   80 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~------   80 (216)
                      .....++|+|+|.+|+|||||+|+|++...... .....+..........++  ..+.+|||||......   .      
T Consensus        27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~  104 (249)
T cd01853          27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILS  104 (249)
T ss_pred             hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHH
Confidence            445669999999999999999999999765322 222233334444445566  6789999999654321   0      


Q ss_pred             -cccccc--cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCC
Q 027949           81 -TTAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASD--NVNKILVGNKADMD  133 (216)
Q Consensus        81 -~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~Dl~  133 (216)
                       ...++.  ..|+++||..++....-..-...++.+....+.  -.++++|.||+|..
T Consensus       105 ~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~  162 (249)
T cd01853         105 SIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASS  162 (249)
T ss_pred             HHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence             112222  468888887665432111112333334333221  25689999999964

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>TIGR00101 ureG urease accessory protein UreG

Probab=99.44  E-value=2.2e-12  Score=96.35  Aligned_cols=103  Identities=18%  Similarity=0.107  Sum_probs=64.0

Q ss_pred             EEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHH
Q 027949           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK  143 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  143 (216)
                      ....++++.|.........   .-+|.+|.|+|+.+.+....  .+...+      ...-++++||+|+.+. .....+.
T Consensus        92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~-~~~~~~~  159 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPM-VGADLGV  159 (199)
T ss_pred             CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhcccc-ccccHHH
Confidence            4566778888432222221   12678999999987665321  111111      1122889999998642 1123333


Q ss_pred             HHHHHHH--hCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 027949          144 GQALADE--YGIKFFETSAKTNLNVEEVFFSIARDIK  178 (216)
Q Consensus       144 ~~~~~~~--~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  178 (216)
                      ..+..+.  .+.+++++||++|+|++++|+||.+.++
T Consensus       160 ~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       160 MERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             HHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            3444443  2479999999999999999999987653

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.44  E-value=3.4e-12  Score=100.05  Aligned_cols=120  Identities=19%  Similarity=0.152  Sum_probs=70.9

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCc-cccceeeeEEEEEEEECCeEEEEEEEeCCCccccccc-------ccc
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTS-FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-------TTA   83 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~   83 (216)
                      ....++|+|+|.+|+||||++|+|++...... .....+..........++  ..+.++||||.......       ...
T Consensus        35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~  112 (313)
T TIGR00991        35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKR  112 (313)
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHH
Confidence            34669999999999999999999998875321 122222222223334455  68899999996543211       111


Q ss_pred             cc--ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCC
Q 027949           84 YY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS--DNVNKILVGNKADMD  133 (216)
Q Consensus        84 ~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~  133 (216)
                      ++  ...|+++||..++.......-...+..+...++  --.+.+|++|+.|..
T Consensus       113 ~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~  166 (313)
T TIGR00991       113 FLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS  166 (313)
T ss_pred             HhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence            11  258999999665432111111222333333221  125689999999965

>PRK13768 GTPase; Provisional

Probab=99.44  E-value=1.4e-12  Score=101.03  Aligned_cols=113  Identities=19%  Similarity=0.142  Sum_probs=69.1

Q ss_pred             EEEEEeCCCcccc---cccccccccc-----ccEEEEEEeCCCHhHHHHHH--HHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949           65 KLQIWDTAGQERF---RTITTAYYRG-----AMGILLVYDVTDESSFNNIR--NWIRNIEQHASDNVNKILVGNKADMDE  134 (216)
Q Consensus        65 ~~~i~D~~G~~~~---~~~~~~~~~~-----~d~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (216)
                      .+.+||+||+.+.   ...+..+++.     .+++++|+|+..........  .|+...... ..+.|+++|+||+|+.+
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~  176 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS  176 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence            6889999997653   3333333322     78999999996543322221  122211111 23789999999999854


Q ss_pred             CCCc-cChHHHH------------------------HHHHHhC--CeEEEEecCCCCCHHHHHHHHHHHHH
Q 027949          135 SKRA-VPTSKGQ------------------------ALADEYG--IKFFETSAKTNLNVEEVFFSIARDIK  178 (216)
Q Consensus       135 ~~~~-~~~~~~~------------------------~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i~  178 (216)
                      .... .......                        +.....+  .+++++|+++++|+++++++|.+.+.
T Consensus       177 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~  247 (253)
T PRK13768        177 EEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC  247 (253)
T ss_pred             chhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence            3211 0001011                        1122334  58899999999999999999988763

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.44  E-value=3.3e-12  Score=96.59  Aligned_cols=163  Identities=20%  Similarity=0.202  Sum_probs=94.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCcc--ccceeeeEEEEEEEECCeEEEEEEEeCCCccccccc-----------cc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSF--ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-----------TT   82 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~~   82 (216)
                      ++|+|+|.+|+||||++|.|++.......  ....+..+......+++  ..+.++||||.......           ..
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            58999999999999999999998765332  23344456666667888  67889999994322111           11


Q ss_pred             cccccccEEEEEEeCCCHh-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc---c---ChHHHHHHHHHhCCeE
Q 027949           83 AYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA---V---PTSKGQALADEYGIKF  155 (216)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---~---~~~~~~~~~~~~~~~~  155 (216)
                      ......|++|||+.+.+.. ....+..++..+....- -..++||.+..|.......   +   ....++.+....+-.|
T Consensus        79 ~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~-~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~  157 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEI-WKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRY  157 (212)
T ss_dssp             HTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGG-GGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred             hccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHH-HhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEE
Confidence            2345689999999988432 11222223333322111 2457888888885332220   0   1123556666777778


Q ss_pred             EEEecC------CCCCHHHHHHHHHHHHHHHh
Q 027949          156 FETSAK------TNLNVEEVFFSIARDIKQRL  181 (216)
Q Consensus       156 ~~~Sa~------~~~gi~~l~~~l~~~i~~~~  181 (216)
                      ...+.+      +...+.+|+..|-+.+.+..
T Consensus       158 ~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~  189 (212)
T PF04548_consen  158 HVFNNKTKDKEKDESQVSELLEKIEEMVQENG  189 (212)
T ss_dssp             EECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence            777766      23457777777766666553

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.43  E-value=8.1e-12  Score=103.38  Aligned_cols=163  Identities=20%  Similarity=0.280  Sum_probs=122.8

Q ss_pred             CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027949           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      .....+.+.|+|+.++|||.|++.+++..+...+..+....+....+...+....+.+.|.+-. ....+...- ..+|+
T Consensus       421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv  498 (625)
T KOG1707|consen  421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV  498 (625)
T ss_pred             ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence            4456799999999999999999999998887766666666677777777777788888888754 222222222 67999


Q ss_pred             EEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEecCCCCCHHHH
Q 027949           91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVEEV  169 (216)
Q Consensus        91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l  169 (216)
                      ++++||.+++.++..+...+..-...  ...|+++|+.|+|+.+..+...... .+++.++++ +.+..|....-. .++
T Consensus       499 ~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqp-de~~~~~~i~~P~~~S~~~~~s-~~l  574 (625)
T KOG1707|consen  499 ACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQP-DEFCRQLGLPPPIHISSKTLSS-NEL  574 (625)
T ss_pred             EEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCCh-HHHHHhcCCCCCeeeccCCCCC-chH
Confidence            99999999999999987766544433  4799999999999976555555555 889999996 556666664223 889


Q ss_pred             HHHHHHHHHH
Q 027949          170 FFSIARDIKQ  179 (216)
Q Consensus       170 ~~~l~~~i~~  179 (216)
                      |..|..+...
T Consensus       575 f~kL~~~A~~  584 (625)
T KOG1707|consen  575 FIKLATMAQY  584 (625)
T ss_pred             HHHHHHhhhC
Confidence            9988876643

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.42  E-value=1.1e-12  Score=115.23  Aligned_cols=120  Identities=20%  Similarity=0.205  Sum_probs=79.1

Q ss_pred             CCCceEEEEEEcCCCCcHHHHHHHHHcC---------------CCCC-ccccceeeeE--EEEEEEECCeEEEEEEEeCC
Q 027949           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDG---------------SFTT-SFITTIGIDF--KIRTIELDGKRIKLQIWDTA   72 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~~GKStli~~l~~~---------------~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~i~D~~   72 (216)
                      ..+..-+|+|+|..++|||||+++|+..               ++.. +.....+...  ....+.+++..+.+.+||||
T Consensus        15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTP   94 (720)
T TIGR00490        15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTP   94 (720)
T ss_pred             CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCC
Confidence            3455679999999999999999999752               1111 0111112111  11122344555899999999


Q ss_pred             CccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949           73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE  134 (216)
Q Consensus        73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (216)
                      |+..|.......++.+|++|+|+|+.+.-.......| ..+..   .+.|+++++||+|...
T Consensus        95 G~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        95 GHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQALK---ENVKPVLFINKVDRLI  152 (720)
T ss_pred             CccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHHH---cCCCEEEEEEChhccc
Confidence            9988877778888999999999999774322222122 22222   2578899999999754

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.42  E-value=3e-12  Score=100.24  Aligned_cols=151  Identities=23%  Similarity=0.226  Sum_probs=102.4

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCC---------------------------------CCCccccceeeeEEEEEEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGS---------------------------------FTTSFITTIGIDFKIRTIEL   59 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~   59 (216)
                      ...++++-+|.-.-||||||-+|+...                                 +..+...+.+++..++.|..
T Consensus         4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT   83 (431)
T COG2895           4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST   83 (431)
T ss_pred             ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence            345999999999999999999997621                                 01233344555555555544


Q ss_pred             CCeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc
Q 027949           60 DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAV  139 (216)
Q Consensus        60 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~  139 (216)
                      +.  .+|.+-||||++.|-.....-..-+|++|+++|+-..- +++.+ ....+..... -..+++.+||+||.+..++.
T Consensus        84 ~K--RkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTr-RHs~I~sLLG-IrhvvvAVNKmDLvdy~e~~  158 (431)
T COG2895          84 EK--RKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTR-RHSFIASLLG-IRHVVVAVNKMDLVDYSEEV  158 (431)
T ss_pred             cc--ceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhH-HHHHHHHHhC-CcEEEEEEeeecccccCHHH
Confidence            44  68899999999998877666677899999999994321 12221 1122222221 25667779999998654432


Q ss_pred             ---ChHHHHHHHHHhC---CeEEEEecCCCCCHHH
Q 027949          140 ---PTSKGQALADEYG---IKFFETSAKTNLNVEE  168 (216)
Q Consensus       140 ---~~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~  168 (216)
                         ...+...|+..++   ..++++||..|+|+-.
T Consensus       159 F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~  193 (431)
T COG2895         159 FEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS  193 (431)
T ss_pred             HHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence               3345666777777   4899999999988643

>PTZ00258 GTP-binding protein; Provisional

Probab=99.40  E-value=5.9e-12  Score=102.22  Aligned_cols=86  Identities=21%  Similarity=0.208  Sum_probs=64.2

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeE---------------EEEEEEeCCCcccc
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQERF   77 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~   77 (216)
                      ...++|+++|.||+|||||+|+|++........|.++.+.....+.+.+..               .++.++|+||...-
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g   98 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG   98 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence            345899999999999999999999988766666777777777777665322               35899999995421


Q ss_pred             c----cc---cccccccccEEEEEEeCC
Q 027949           78 R----TI---TTAYYRGAMGILLVYDVT   98 (216)
Q Consensus        78 ~----~~---~~~~~~~~d~~i~v~d~~   98 (216)
                      .    .+   ....++++|++++|+|..
T Consensus        99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            1    11   223457899999999974

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.40  E-value=6.9e-12  Score=94.54  Aligned_cols=154  Identities=18%  Similarity=0.185  Sum_probs=85.2

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCcc------ccceee------eEEEEEEEE-C------------------
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSF------ITTIGI------DFKIRTIEL-D------------------   60 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~------~~~~~~------~~~~~~~~~-~------------------   60 (216)
                      ......|.|+|..|+|||||+++++........      ......      ......+.. +                  
T Consensus        19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~   98 (207)
T TIGR00073        19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDL   98 (207)
T ss_pred             hcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHh
Confidence            345688999999999999999998754110000      000000      000000000 0                  


Q ss_pred             -CeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc
Q 027949           61 -GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAV  139 (216)
Q Consensus        61 -~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~  139 (216)
                       .....+.++|+.|.-..   ...+....+..+.|+|+.+.+...  .... .+     ...|.++++||+|+.+.. ..
T Consensus        99 ~~~~~d~IiIEt~G~l~~---~~~~~~~~~~~i~Vvd~~~~d~~~--~~~~-~~-----~~~a~iiv~NK~Dl~~~~-~~  166 (207)
T TIGR00073        99 PLDDIDLLFIENVGNLVC---PADFDLGEHMRVVLLSVTEGDDKP--LKYP-GM-----FKEADLIVINKADLAEAV-GF  166 (207)
T ss_pred             ccCCCCEEEEecCCCcCC---CcccccccCeEEEEEecCcccchh--hhhH-hH-----HhhCCEEEEEHHHccccc-hh
Confidence             01235667777772110   111112345556778876553211  1111 11     146779999999986421 12


Q ss_pred             ChHHHHHHHHHhC--CeEEEEecCCCCCHHHHHHHHHHHH
Q 027949          140 PTSKGQALADEYG--IKFFETSAKTNLNVEEVFFSIARDI  177 (216)
Q Consensus       140 ~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i  177 (216)
                      .........+...  ++++++||++|.|++++++|+.+..
T Consensus       167 ~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~  206 (207)
T TIGR00073       167 DVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV  206 (207)
T ss_pred             hHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            2333444444443  7999999999999999999998753

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.39  E-value=1.6e-11  Score=97.96  Aligned_cols=106  Identities=16%  Similarity=0.123  Sum_probs=67.4

Q ss_pred             EEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-ccChH
Q 027949           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR-AVPTS  142 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~  142 (216)
                      +.+.|+||+|.......   ....+|.++++.+...++.+.....   .+.+.     .-++|+||+|+.+... .....
T Consensus       149 ~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E~-----aDIiVVNKaDl~~~~~a~~~~~  217 (332)
T PRK09435        149 YDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIMEL-----ADLIVINKADGDNKTAARRAAA  217 (332)
T ss_pred             CCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhhh-----hheEEeehhcccchhHHHHHHH
Confidence            68899999997533322   4567999999977544544444332   12222     2389999999854221 11112


Q ss_pred             HHHHHHHH-------hCCeEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027949          143 KGQALADE-------YGIKFFETSAKTNLNVEEVFFSIARDIKQR  180 (216)
Q Consensus       143 ~~~~~~~~-------~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  180 (216)
                      ++......       ...+++.+||.++.|+++++++|.+++...
T Consensus       218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l  262 (332)
T PRK09435        218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAAL  262 (332)
T ss_pred             HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            22222222       114899999999999999999999987643

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.39  E-value=1.9e-11  Score=98.27  Aligned_cols=83  Identities=19%  Similarity=0.198  Sum_probs=62.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeE---------------EEEEEEeCCCccccc--
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQERFR--   78 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~~--   78 (216)
                      ++|+++|.||+|||||+|+|++........|.++.+.....+.+.+..               ..+.++|+||...-.  
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            789999999999999999999988655555777777777777665532               258999999954211  


Q ss_pred             --cc---cccccccccEEEEEEeCC
Q 027949           79 --TI---TTAYYRGAMGILLVYDVT   98 (216)
Q Consensus        79 --~~---~~~~~~~~d~~i~v~d~~   98 (216)
                        .+   ....++.+|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence              11   122357899999999984

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.38  E-value=2e-11  Score=96.97  Aligned_cols=131  Identities=18%  Similarity=0.213  Sum_probs=90.6

Q ss_pred             eEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhH----------HHHHHHHHHHHHHhc-CC
Q 027949           51 DFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS----------FNNIRNWIRNIEQHA-SD  119 (216)
Q Consensus        51 ~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~----------~~~~~~~~~~~~~~~-~~  119 (216)
                      ......+.+.+  ..+.++|.+|+...+.-|..++.+++++|||+++++.+-          +.+...++..+.... -.
T Consensus       184 GI~e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~  261 (354)
T KOG0082|consen  184 GIVEVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFA  261 (354)
T ss_pred             CeeEEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccc
Confidence            35555666666  788899999999888889999999999999999987422          222223333333221 14


Q ss_pred             CCcEEEEEeCCCCCCC--------------CCccChHHHHHHHHH-----h-----CCeEEEEecCCCCCHHHHHHHHHH
Q 027949          120 NVNKILVGNKADMDES--------------KRAVPTSKGQALADE-----Y-----GIKFFETSAKTNLNVEEVFFSIAR  175 (216)
Q Consensus       120 ~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~-----~-----~~~~~~~Sa~~~~gi~~l~~~l~~  175 (216)
                      +.++++++||.||..+              ...-..+++..+...     +     .+-...+.|.+..+|+.+|..+.+
T Consensus       262 ~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d  341 (354)
T KOG0082|consen  262 NTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTD  341 (354)
T ss_pred             cCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHH
Confidence            6899999999998331              112233444444321     1     245667789999999999999999


Q ss_pred             HHHHHhhc
Q 027949          176 DIKQRLAD  183 (216)
Q Consensus       176 ~i~~~~~~  183 (216)
                      .+.+..-+
T Consensus       342 ~Ii~~nlk  349 (354)
T KOG0082|consen  342 TIIQNNLK  349 (354)
T ss_pred             HHHHHHHH
Confidence            99887544

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.37  E-value=4e-12  Score=98.05  Aligned_cols=95  Identities=20%  Similarity=0.265  Sum_probs=76.2

Q ss_pred             cccccccccccccccEEEEEEeCCCHh-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC
Q 027949           75 ERFRTITTAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI  153 (216)
Q Consensus        75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  153 (216)
                      +++..+.+.+++++|++++|+|+.++. ++..+..|+..+..   .+.|+++|+||+||.+. .....+....+ ...+.
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~-~~~~~~~~~~~-~~~g~   98 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDD-EDMEKEQLDIY-RNIGY   98 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCC-HHHHHHHHHHH-HHCCC
Confidence            567778888999999999999999988 88999999876654   37899999999999542 22222334444 35788


Q ss_pred             eEEEEecCCCCCHHHHHHHHH
Q 027949          154 KFFETSAKTNLNVEEVFFSIA  174 (216)
Q Consensus       154 ~~~~~Sa~~~~gi~~l~~~l~  174 (216)
                      +++++||++|.|++++|+.|.
T Consensus        99 ~v~~~SAktg~gi~eLf~~l~  119 (245)
T TIGR00157        99 QVLMTSSKNQDGLKELIEALQ  119 (245)
T ss_pred             eEEEEecCCchhHHHHHhhhc
Confidence            999999999999999998876

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.37  E-value=7.7e-12  Score=98.03  Aligned_cols=141  Identities=21%  Similarity=0.309  Sum_probs=77.4

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCcc----------ccceeeeEEEEEEEECCeEEEEEEEeCCCccc-------
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSF----------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-------   76 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------   76 (216)
                      ..++|+|+|.+|+|||||+|.|++.......          ..+.........+.-++..+.+.++||||...       
T Consensus         3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~   82 (281)
T PF00735_consen    3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC   82 (281)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence            4699999999999999999999987654321          12333444445556678889999999999211       


Q ss_pred             -----------ccc-------cc--ccccccccEEEEEEeCCCHh-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-
Q 027949           77 -----------FRT-------IT--TAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKILVGNKADMDE-  134 (216)
Q Consensus        77 -----------~~~-------~~--~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-  134 (216)
                                 |..       ..  ...-...|+++|.++.+... .-.++ ..++.+..    ..++|.|+.|+|... 
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di-~~mk~Ls~----~vNvIPvIaKaD~lt~  157 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI-EFMKRLSK----RVNVIPVIAKADTLTP  157 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH-HHHHHHTT----TSEEEEEESTGGGS-H
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH-HHHHHhcc----cccEEeEEecccccCH
Confidence                       000       00  11113578999999976421 11122 23334433    578999999999643 


Q ss_pred             CCCccChHHHHHHHHHhCCeEEEEe
Q 027949          135 SKRAVPTSKGQALADEYGIKFFETS  159 (216)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~S  159 (216)
                      ++-......+..-...+++.+|...
T Consensus       158 ~el~~~k~~i~~~l~~~~I~~f~f~  182 (281)
T PF00735_consen  158 EELQAFKQRIREDLEENNIKIFDFP  182 (281)
T ss_dssp             HHHHHHHHHHHHHHHHTT--S----
T ss_pred             HHHHHHHHHHHHHHHHcCceeeccc
Confidence            1112223344455566777766543

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.36  E-value=6.7e-12  Score=110.66  Aligned_cols=120  Identities=19%  Similarity=0.161  Sum_probs=78.9

Q ss_pred             CCCceEEEEEEcCCCCcHHHHHHHHHcCCCC-C---------------ccccceeeeEEEEEEEE--CCeEEEEEEEeCC
Q 027949           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFT-T---------------SFITTIGIDFKIRTIEL--DGKRIKLQIWDTA   72 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~-~---------------~~~~~~~~~~~~~~~~~--~~~~~~~~i~D~~   72 (216)
                      +.+..-+|+|+|..++|||||+.+|+...-. .               +...+.+.......+.+  ++..+.++++|||
T Consensus        16 ~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP   95 (731)
T PRK07560         16 NPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTP   95 (731)
T ss_pred             chhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCC
Confidence            3455568999999999999999999753211 0               00111222222222323  4445789999999


Q ss_pred             CccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949           73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE  134 (216)
Q Consensus        73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (216)
                      |+..|.......++.+|++|+|+|+...........|. .+...   +.|.++++||+|...
T Consensus        96 G~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~-~~~~~---~~~~iv~iNK~D~~~  153 (731)
T PRK07560         96 GHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLR-QALRE---RVKPVLFINKVDRLI  153 (731)
T ss_pred             CccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHH-HHHHc---CCCeEEEEECchhhc
Confidence            99888777778889999999999987753322222232 22222   467899999999753

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.34  E-value=1e-12  Score=100.68  Aligned_cols=111  Identities=18%  Similarity=0.245  Sum_probs=57.7

Q ss_pred             EEEEEeCCCcccccccccccc--------ccccEEEEEEeCCC---HhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027949           65 KLQIWDTAGQERFRTITTAYY--------RGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD  133 (216)
Q Consensus        65 ~~~i~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  133 (216)
                      .+.|+||||+.++-..+....        ...-++++++|+..   +..+-.  .++..+.-....+.|.+.|+||+|+.
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s--~~L~s~s~~~~~~lP~vnvlsK~Dl~  169 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVS--SLLLSLSIMLRLELPHVNVLSKIDLL  169 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHH--HHHHHHHHHHHHTSEEEEEE--GGGS
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHH--HHHHHHHHHhhCCCCEEEeeeccCcc
Confidence            688999999877554443322        34557888999754   333322  22222222222379999999999986


Q ss_pred             CCCCc------c------------ChHHHHHHHHH---hC-C-eEEEEecCCCCCHHHHHHHHHHHH
Q 027949          134 ESKRA------V------------PTSKGQALADE---YG-I-KFFETSAKTNLNVEEVFFSIARDI  177 (216)
Q Consensus       134 ~~~~~------~------------~~~~~~~~~~~---~~-~-~~~~~Sa~~~~gi~~l~~~l~~~i  177 (216)
                      +....      .            .......++.-   .+ . .++.+|+.+++|+++++..|-+.+
T Consensus       170 ~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  170 SKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             -HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             cchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            52100      0            01111112221   12 3 799999999999999999887654

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.33  E-value=1e-11  Score=85.64  Aligned_cols=114  Identities=31%  Similarity=0.377  Sum_probs=79.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccc-cceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFI-TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      +||+++|..|+|||+|+.++....+...+. ++.+                           +......+.+.++.+++|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            489999999999999999997766643332 2222                           222334456678889999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHH
Q 027949           95 YDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE  167 (216)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  167 (216)
                      ++..+.+++..+  |...+........|.++++||.|+.+.. ....+..        ..++++|+++|.|+.
T Consensus        54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~-~~~~~~~--------~~~~~~s~~~~~~~~  115 (124)
T smart00010       54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEER-QVATEEG--------LEFAETSAKTPEEGE  115 (124)
T ss_pred             EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhC-cCCHHHH--------HHHHHHhCCCcchhh
Confidence            999999988765  7666655555568889999999984322 2332222        245677889988873

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.33  E-value=4.4e-12  Score=101.96  Aligned_cols=160  Identities=14%  Similarity=0.165  Sum_probs=77.4

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCC-Cccccc-e-eeeEEEEEEEECCeEEEEEEEeCCCccccccccccc-----c
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITT-I-GIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY-----Y   85 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~-~-~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~-----~   85 (216)
                      ..++|+|+|.+|+|||||||+|.+-... ....++ . .+......+..- ..-.+.+||.||..........|     +
T Consensus        34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p-~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~  112 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHP-KFPNVTLWDLPGIGTPNFPPEEYLKEVKF  112 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-S-S-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCC-CCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence            4589999999999999999999763221 111111 1 111111111111 11258899999965433222222     4


Q ss_pred             ccccEEEEEEeCCCHhHHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCC--CCC----CCccC----hHHHHHHHHH----
Q 027949           86 RGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADM--DES----KRAVP----TSKGQALADE----  150 (216)
Q Consensus        86 ~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl--~~~----~~~~~----~~~~~~~~~~----  150 (216)
                      ...|.+|++.+-    .|..... +...+...   +.|+++|-+|.|.  .++    .....    .+.+++.+.+    
T Consensus       113 ~~yD~fiii~s~----rf~~ndv~La~~i~~~---gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k  185 (376)
T PF05049_consen  113 YRYDFFIIISSE----RFTENDVQLAKEIQRM---GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK  185 (376)
T ss_dssp             GG-SEEEEEESS----S--HHHHHHHHHHHHT---T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC
T ss_pred             cccCEEEEEeCC----CCchhhHHHHHHHHHc---CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH
Confidence            467877776663    2222222 22334433   7899999999995  111    01112    1233333322    


Q ss_pred             hC---CeEEEEecCCC--CCHHHHHHHHHHHHHHHh
Q 027949          151 YG---IKFFETSAKTN--LNVEEVFFSIARDIKQRL  181 (216)
Q Consensus       151 ~~---~~~~~~Sa~~~--~gi~~l~~~l~~~i~~~~  181 (216)
                      .+   .++|.+|+.+-  .++..|.+.|.+.+..+.
T Consensus       186 ~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K  221 (376)
T PF05049_consen  186 AGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK  221 (376)
T ss_dssp             TT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred             cCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence            23   37999999764  567778877777665543

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.33  E-value=6.1e-11  Score=95.62  Aligned_cols=141  Identities=17%  Similarity=0.247  Sum_probs=87.3

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcC----CCC------------Cccccc---eeeeEEE---EEEEE---CCeEEEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDG----SFT------------TSFITT---IGIDFKI---RTIEL---DGKRIKLQIW   69 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~----~~~------------~~~~~~---~~~~~~~---~~~~~---~~~~~~~~i~   69 (216)
                      .+.|.|+|+.++|||||+++|.+.    +..            ....++   .++++..   .-+.+   ++....+.++
T Consensus        17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI   96 (492)
T TIGR02836        17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV   96 (492)
T ss_pred             cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence            389999999999999999999987    322            122233   3333333   22222   4555788999


Q ss_pred             eCCCcccccc--------------c---------------cccccc-cccEEEEEE-eCC--C--HhHHHH-HHHHHHHH
Q 027949           70 DTAGQERFRT--------------I---------------TTAYYR-GAMGILLVY-DVT--D--ESSFNN-IRNWIRNI  113 (216)
Q Consensus        70 D~~G~~~~~~--------------~---------------~~~~~~-~~d~~i~v~-d~~--~--~~~~~~-~~~~~~~~  113 (216)
                      |++|...-..              -               ....+. ++++.|+|. |.+  +  ++.+.. -..++..+
T Consensus        97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL  176 (492)
T TIGR02836        97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL  176 (492)
T ss_pred             ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence            9999321100              0               122234 688888888 764  1  112222 23355555


Q ss_pred             HHhcCCCCcEEEEEeCCC-CCCCCCccChHHHHHHHHHhCCeEEEEecCC
Q 027949          114 EQHASDNVNKILVGNKAD-MDESKRAVPTSKGQALADEYGIKFFETSAKT  162 (216)
Q Consensus       114 ~~~~~~~~p~ivv~nK~D-l~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (216)
                      ...   ++|+++|+|+.| ..+    ...+....+..+++++++.+|+..
T Consensus       177 k~~---~kPfiivlN~~dp~~~----et~~l~~~l~eky~vpvl~v~c~~  219 (492)
T TIGR02836       177 KEL---NKPFIILLNSTHPYHP----ETEALRQELEEKYDVPVLAMDVES  219 (492)
T ss_pred             Hhc---CCCEEEEEECcCCCCc----hhHHHHHHHHHHhCCceEEEEHHH
Confidence            544   799999999999 322    244445566677888888887753

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.32  E-value=1.4e-11  Score=89.39  Aligned_cols=151  Identities=20%  Similarity=0.127  Sum_probs=83.3

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEE---------------EEEEE--------------------
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKI---------------RTIEL--------------------   59 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~---------------~~~~~--------------------   59 (216)
                      .++|.|.|++|||||+|+.+++..-.........+.+...               ..+..                    
T Consensus        13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~   92 (202)
T COG0378          13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL   92 (202)
T ss_pred             eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence            5899999999999999999876532111111111111111               00000                    


Q ss_pred             CCeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc
Q 027949           60 DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAV  139 (216)
Q Consensus        60 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~  139 (216)
                      +.....+.|++.+|. ...  .-++.-..+.-|+|+|....+....  +-...+      ...-++|+||.||.+.- ..
T Consensus        93 ~~~~~Dll~iEs~GN-L~~--~~sp~L~d~~~v~VidvteGe~~P~--K~gP~i------~~aDllVInK~DLa~~v-~~  160 (202)
T COG0378          93 DFPDLDLLFIESVGN-LVC--PFSPDLGDHLRVVVIDVTEGEDIPR--KGGPGI------FKADLLVINKTDLAPYV-GA  160 (202)
T ss_pred             cCCcCCEEEEecCcc-eec--ccCcchhhceEEEEEECCCCCCCcc--cCCCce------eEeeEEEEehHHhHHHh-Cc
Confidence            001135555666652 000  1111112337888999877642110  000001      01238899999997633 33


Q ss_pred             ChHHHHHHHHHhC--CeEEEEecCCCCCHHHHHHHHHHHH
Q 027949          140 PTSKGQALADEYG--IKFFETSAKTNLNVEEVFFSIARDI  177 (216)
Q Consensus       140 ~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i  177 (216)
                      +.+...+-+++.+  .+++++|+++|+|+++++.|+....
T Consensus       161 dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         161 DLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             cHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            3444444444443  7999999999999999999987653

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.32  E-value=4.8e-11  Score=93.38  Aligned_cols=160  Identities=18%  Similarity=0.220  Sum_probs=97.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCC----C---CCccccceeeeEEEEEEEE-------CCeEEEEEEEeCCCcccccccc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGS----F---TTSFITTIGIDFKIRTIEL-------DGKRIKLQIWDTAGQERFRTIT   81 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~----~---~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~D~~G~~~~~~~~   81 (216)
                      +++.++|.-.+|||||.++|..-.    +   +.+...+.+.+.....+..       .++...+.++|.||+...-...
T Consensus         8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRti   87 (522)
T KOG0461|consen    8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRTI   87 (522)
T ss_pred             eeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHHH
Confidence            999999999999999999996522    2   2233344555555555444       3445788999999986433222


Q ss_pred             ccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccC--hHHHHHHHHHh-------C
Q 027949           82 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVP--TSKGQALADEY-------G  152 (216)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~~~~~~~-------~  152 (216)
                      ..-..-.|.+++|+|+....--..++-++  +-+..  ....+||+||+|+.++....+  .+..+...+.+       +
T Consensus        88 iggaqiiDlm~lviDv~kG~QtQtAEcLi--ig~~~--c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g~  163 (522)
T KOG0461|consen   88 IGGAQIIDLMILVIDVQKGKQTQTAECLI--IGELL--CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFDGN  163 (522)
T ss_pred             HhhhheeeeeeEEEehhcccccccchhhh--hhhhh--ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcCCC
Confidence            22233468899999987643323332221  11111  245688899999654322211  12233333322       1


Q ss_pred             CeEEEEecCCC----CCHHHHHHHHHHHHHH
Q 027949          153 IKFFETSAKTN----LNVEEVFFSIARDIKQ  179 (216)
Q Consensus       153 ~~~~~~Sa~~~----~gi~~l~~~l~~~i~~  179 (216)
                      .|++++||.+|    +++.++.+.|.+.+.+
T Consensus       164 ~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~  194 (522)
T KOG0461|consen  164 SPIVEVSAADGYFKEEMIQELKEALESRIFE  194 (522)
T ss_pred             CceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence            69999999999    6777777776666554

>cd01882 BMS1 Bms1

Probab=99.31  E-value=6.4e-11  Score=90.33  Aligned_cols=140  Identities=14%  Similarity=0.181  Sum_probs=81.0

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      .....|+|+|.+|+|||||++.+.+...........+. .  ......  ...+.++|+||..  .. .....+.+|+++
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i--~i~~~~--~~~i~~vDtPg~~--~~-~l~~ak~aDvVl  108 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I--TVVTGK--KRRLTFIECPNDI--NA-MIDIAKVADLVL  108 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E--EEEecC--CceEEEEeCCchH--HH-HHHHHHhcCEEE
Confidence            34477899999999999999999875221111111111 1  111123  3578899999863  22 223457899999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCCCcc--ChHHHHH-HHHHh--CCeEEEEecCCCC
Q 027949           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKI-LVGNKADMDESKRAV--PTSKGQA-LADEY--GIKFFETSAKTNL  164 (216)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~--~~~~~~~-~~~~~--~~~~~~~Sa~~~~  164 (216)
                      +++|++....... ...+..+...   +.|.+ +|+||+|+.+.....  ....++. +..+.  +.+++.+||+++-
T Consensus       109 lviDa~~~~~~~~-~~i~~~l~~~---g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~  182 (225)
T cd01882         109 LLIDASFGFEMET-FEFLNILQVH---GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG  182 (225)
T ss_pred             EEEecCcCCCHHH-HHHHHHHHHc---CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence            9999976443222 2233333322   56754 599999986422111  1122222 22222  3699999999873

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.30  E-value=5.2e-12  Score=93.44  Aligned_cols=147  Identities=21%  Similarity=0.308  Sum_probs=97.3

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCcccc-----ccccccccccc
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-----RTITTAYYRGA   88 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~~~~   88 (216)
                      .-||+++|.+|+|||++-..+..+-.. ....++.+.+.....+.+-|. ..+.+||.+|++.+     .......+++.
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~nV   82 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFRNV   82 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhhheeh
Confidence            358999999999999987776643322 233455556666666666543 67899999998742     22456678899


Q ss_pred             cEEEEEEeCCCHhHHHHHHHHHH---HHHHhcCCCCcEEEEEeCCCCCCCCC-ccCh----HHHHHHHHHhCCeEEEEec
Q 027949           89 MGILLVYDVTDESSFNNIRNWIR---NIEQHASDNVNKILVGNKADMDESKR-AVPT----SKGQALADEYGIKFFETSA  160 (216)
Q Consensus        89 d~~i~v~d~~~~~~~~~~~~~~~---~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~----~~~~~~~~~~~~~~~~~Sa  160 (216)
                      +++|+|||++..+-..++..+-.   .+..+. +...+++.+.|.|+..... +...    +..+.+.....+.++.+|.
T Consensus        83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~S-P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi  161 (295)
T KOG3886|consen   83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNS-PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI  161 (295)
T ss_pred             eeeeeeeeccchhhhhhHHHHHHHHHHHHhcC-CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence            99999999998876666655444   333333 3567788899999864322 1111    2233333444578888887


Q ss_pred             CCC
Q 027949          161 KTN  163 (216)
Q Consensus       161 ~~~  163 (216)
                      .+.
T Consensus       162 wDe  164 (295)
T KOG3886|consen  162 WDE  164 (295)
T ss_pred             hhH
Confidence            754

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.30  E-value=2.5e-11  Score=102.90  Aligned_cols=161  Identities=16%  Similarity=0.175  Sum_probs=106.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEEC------------Ce----EEEEEEEeCCCcccccc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD------------GK----RIKLQIWDTAGQERFRT   79 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~----~~~~~i~D~~G~~~~~~   79 (216)
                      .-+||+|...+|||-|+..+.+.++......+.+.......+...            +.    ---+.++||||++.|..
T Consensus       476 PIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtn  555 (1064)
T KOG1144|consen  476 PICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTN  555 (1064)
T ss_pred             ceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhh
Confidence            558999999999999999999877765444444322222222111            10    01356789999999999


Q ss_pred             ccccccccccEEEEEEeCCCH---hHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----CCc-------cCh---
Q 027949           80 ITTAYYRGAMGILLVYDVTDE---SSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES-----KRA-------VPT---  141 (216)
Q Consensus        80 ~~~~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----~~~-------~~~---  141 (216)
                      +.......||++|+|+|+...   .+++.+    ..++   ..+.|+||.+||+|....     ...       ...   
T Consensus       556 lRsrgsslC~~aIlvvdImhGlepqtiESi----~lLR---~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~  628 (1064)
T KOG1144|consen  556 LRSRGSSLCDLAILVVDIMHGLEPQTIESI----NLLR---MRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQ  628 (1064)
T ss_pred             hhhccccccceEEEEeehhccCCcchhHHH----HHHH---hcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHH
Confidence            998888999999999999764   333332    2232   337999999999994211     000       000   


Q ss_pred             --------HHHHHHHHH-h-----------C--CeEEEEecCCCCCHHHHHHHHHHHHHHHhhc
Q 027949          142 --------SKGQALADE-Y-----------G--IKFFETSAKTNLNVEEVFFSIARDIKQRLAD  183 (216)
Q Consensus       142 --------~~~~~~~~~-~-----------~--~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~  183 (216)
                              ..+..|+.. +           +  +.++++||..|+||.+|+.||++.....+.+
T Consensus       629 ~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~  692 (1064)
T KOG1144|consen  629 NEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVE  692 (1064)
T ss_pred             HHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHH
Confidence                    011111110 0           1  5789999999999999999999877665543

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.29  E-value=8.9e-11  Score=97.33  Aligned_cols=157  Identities=17%  Similarity=0.143  Sum_probs=101.9

Q ss_pred             CCCCceEEEEEEcCCCCcHHHHHHHHHc-------------------------------CCCCCccccceeeeEEEEEEE
Q 027949           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSD-------------------------------GSFTTSFITTIGIDFKIRTIE   58 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~~GKStli~~l~~-------------------------------~~~~~~~~~~~~~~~~~~~~~   58 (216)
                      ..+...+.++|+|...+|||||+.+++.                               .+...+...+.+++.....+ 
T Consensus       172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~f-  250 (603)
T KOG0458|consen  172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWF-  250 (603)
T ss_pred             cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEE-
Confidence            3455679999999999999999999865                               11112344455544444444 


Q ss_pred             ECCeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHH-----HHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027949           59 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIR-----NWIRNIEQHASDNVNKILVGNKADMD  133 (216)
Q Consensus        59 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-----~~~~~~~~~~~~~~p~ivv~nK~Dl~  133 (216)
                       +.....++|.|+||+..|-.....-..++|++++|+|++..+-...+.     +....+.+..+ -..++|++||+|+.
T Consensus       251 -es~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg-i~qlivaiNKmD~V  328 (603)
T KOG0458|consen  251 -ESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG-ISQLIVAINKMDLV  328 (603)
T ss_pred             -ecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC-cceEEEEeeccccc
Confidence             455588999999998888777777778899999999998643211111     12222333332 34567789999986


Q ss_pred             CCC---CccChHHHHHHH-HHhC-----CeEEEEecCCCCCHHHH
Q 027949          134 ESK---RAVPTSKGQALA-DEYG-----IKFFETSAKTNLNVEEV  169 (216)
Q Consensus       134 ~~~---~~~~~~~~~~~~-~~~~-----~~~~~~Sa~~~~gi~~l  169 (216)
                      +=.   .......+..|. ...|     +.|+++|+..|+|+-..
T Consensus       329 ~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  329 SWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             CccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            411   122233445555 3334     58999999999885543

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.27  E-value=3e-11  Score=107.92  Aligned_cols=120  Identities=18%  Similarity=0.160  Sum_probs=81.9

Q ss_pred             CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCC----------------CccccceeeeEEEEEEEEC-------------
Q 027949           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFT----------------TSFITTIGIDFKIRTIELD-------------   60 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~-------------   60 (216)
                      .+.+..-+|+|+|..++|||||+++|+...-.                .+...+.+.......+.+.             
T Consensus        14 ~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~   93 (843)
T PLN00116         14 DKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGER   93 (843)
T ss_pred             hCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeeccccccccccccc
Confidence            34566789999999999999999999754311                0111122222222233332             


Q ss_pred             -CeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027949           61 -GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD  133 (216)
Q Consensus        61 -~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  133 (216)
                       +..+.++++||||+..|-......++.+|++|+|+|+...-......-|. .+..   .+.|+++++||+|..
T Consensus        94 ~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~-~~~~---~~~p~i~~iNK~D~~  163 (843)
T PLN00116         94 DGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG---ERIRPVLTVNKMDRC  163 (843)
T ss_pred             CCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHH-HHHH---CCCCEEEEEECCccc
Confidence             22478899999999988877777789999999999998764433333232 2322   368999999999975

>cd01900 YchF YchF subfamily

Probab=99.27  E-value=5.4e-11  Score=92.66  Aligned_cols=81  Identities=17%  Similarity=0.185  Sum_probs=60.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeE---------------EEEEEEeCCCccccc----
Q 027949           18 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQERFR----   78 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~~----   78 (216)
                      |+++|.||+|||||+|+|++........|+.+.+.....+.+.+..               ..+.++|+||...-.    
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            5799999999999999999988766666777777777777775532               258999999954211    


Q ss_pred             ccc---ccccccccEEEEEEeCC
Q 027949           79 TIT---TAYYRGAMGILLVYDVT   98 (216)
Q Consensus        79 ~~~---~~~~~~~d~~i~v~d~~   98 (216)
                      .+.   ...++.+|++++|+|+.
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence            122   22356799999999874

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>PTZ00416 elongation factor 2; Provisional

Probab=99.25  E-value=3e-11  Score=107.75  Aligned_cols=118  Identities=20%  Similarity=0.186  Sum_probs=79.3

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCC----------------CccccceeeeEEEEEEEEC--------CeEEEEE
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFT----------------TSFITTIGIDFKIRTIELD--------GKRIKLQ   67 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~--------~~~~~~~   67 (216)
                      .+..-+|+|+|..++|||||+++|+...-.                .+...+.+.......+.+.        +..+.+.
T Consensus        16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~   95 (836)
T PTZ00416         16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN   95 (836)
T ss_pred             ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence            455669999999999999999999863211                0011112222222233333        2246789


Q ss_pred             EEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027949           68 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD  133 (216)
Q Consensus        68 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  133 (216)
                      ++||||+..|.......++.+|++|+|+|+.+.-..... ..+..+...   +.|+++++||+|+.
T Consensus        96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~~~~~---~~p~iv~iNK~D~~  157 (836)
T PTZ00416         96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQALQE---RIRPVLFINKVDRA  157 (836)
T ss_pred             EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHHHHHc---CCCEEEEEEChhhh
Confidence            999999988877777788999999999999875433322 223333332   68999999999975

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.25  E-value=9.7e-12  Score=96.39  Aligned_cols=158  Identities=18%  Similarity=0.153  Sum_probs=107.4

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccc---------cccccc
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---------FRTITT   82 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~   82 (216)
                      .....-|.|+|..|+|||||+++|++........-+.+.+......+..+. ..+.+.||.|.-+         |.. ..
T Consensus       175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg-~~vlltDTvGFisdLP~~LvaAF~A-TL  252 (410)
T KOG0410|consen  175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG-NFVLLTDTVGFISDLPIQLVAAFQA-TL  252 (410)
T ss_pred             cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC-cEEEEeechhhhhhCcHHHHHHHHH-HH
Confidence            344467899999999999999999977766555555666666666655443 3567789999421         222 22


Q ss_pred             cccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcE----EEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEE
Q 027949           83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK----ILVGNKADMDESKRAVPTSKGQALADEYGIKFFET  158 (216)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~----ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (216)
                      .-+..+|.++.|+|+++|+.-.+....+..+.+..-...|.    +=|-||.|..+...+         ..++  .-+.+
T Consensus       253 eeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e---------~E~n--~~v~i  321 (410)
T KOG0410|consen  253 EEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE---------EEKN--LDVGI  321 (410)
T ss_pred             HHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc---------cccC--Ccccc
Confidence            33467999999999999987777777776666653222333    335688886432211         1112  14677


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHhh
Q 027949          159 SAKTNLNVEEVFFSIARDIKQRLA  182 (216)
Q Consensus       159 Sa~~~~gi~~l~~~l~~~i~~~~~  182 (216)
                      ||.+|+|++++...+-..+.....
T Consensus       322 saltgdgl~el~~a~~~kv~~~t~  345 (410)
T KOG0410|consen  322 SALTGDGLEELLKAEETKVASETT  345 (410)
T ss_pred             ccccCccHHHHHHHHHHHhhhhhe
Confidence            999999999999988887766543

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.24  E-value=5.3e-11  Score=94.60  Aligned_cols=105  Identities=16%  Similarity=0.142  Sum_probs=63.7

Q ss_pred             EEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChH
Q 027949           63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTS  142 (216)
Q Consensus        63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~  142 (216)
                      .+.+.|+||+|.....   ...+..+|.++++......   .++..+...+.     ..|.++|+||+|+.+........
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l~-----~~~~ivv~NK~Dl~~~~~~~~~~  194 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGLM-----EIADIYVVNKADGEGATNVTIAR  194 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHHh-----hhccEEEEEcccccchhHHHHHH
Confidence            3788899999854222   2345567888777543322   33333333332     46779999999986432110000


Q ss_pred             -H----HHHHHHH-hC--CeEEEEecCCCCCHHHHHHHHHHHHH
Q 027949          143 -K----GQALADE-YG--IKFFETSAKTNLNVEEVFFSIARDIK  178 (216)
Q Consensus       143 -~----~~~~~~~-~~--~~~~~~Sa~~~~gi~~l~~~l~~~i~  178 (216)
                       .    ...+... .+  .+++.+||+++.|+++++++|.+.+.
T Consensus       195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence             0    0111111 12  36999999999999999999998754

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.23  E-value=4e-10  Score=89.60  Aligned_cols=85  Identities=16%  Similarity=0.175  Sum_probs=64.5

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECC----------------eEEEEEEEeCCCcc---
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG----------------KRIKLQIWDTAGQE---   75 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~D~~G~~---   75 (216)
                      .+++.++|.||+|||||+|+++.......+.|..++++....+....                ....+.++|.+|.-   
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            37899999999999999999999887667778888888877765521                23578899998832   


Q ss_pred             -cccccc---ccccccccEEEEEEeCCC
Q 027949           76 -RFRTIT---TAYYRGAMGILLVYDVTD   99 (216)
Q Consensus        76 -~~~~~~---~~~~~~~d~~i~v~d~~~   99 (216)
                       +-..+-   .+-+|++|+++.|++..+
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f~  109 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCFG  109 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence             222233   334588999999999874

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.22  E-value=9.1e-11  Score=85.41  Aligned_cols=63  Identities=24%  Similarity=0.321  Sum_probs=44.0

Q ss_pred             EEEEEeCCCccc----cccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 027949           65 KLQIWDTAGQER----FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA  130 (216)
Q Consensus        65 ~~~i~D~~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  130 (216)
                      .+.|+|+||...    ....+..+++.+|++|+|.++...-+-.....+.+.....   ...+++|.||+
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence            577899999643    3356777889999999999999866555554454444433   34488889985

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.20  E-value=2.8e-10  Score=96.65  Aligned_cols=123  Identities=19%  Similarity=0.198  Sum_probs=74.7

Q ss_pred             CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCcc-ccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc-------c-
Q 027949           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSF-ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-------I-   80 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~-   80 (216)
                      .+-++.++|+|+|.+|+||||++|.|++....... ....++.........++  ..+.++||||......       + 
T Consensus       113 ~~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeIL  190 (763)
T TIGR00993       113 DPLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKIL  190 (763)
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHH
Confidence            34567789999999999999999999998643222 11222223233334455  6789999999654211       1 


Q ss_pred             --cccccc--cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCCC
Q 027949           81 --TTAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASD--NVNKILVGNKADMDE  134 (216)
Q Consensus        81 --~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~Dl~~  134 (216)
                        ...++.  ..|++|||..+........-..++..+...++.  -..+|||.|+.|..+
T Consensus       191 k~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       191 SSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence              111322  479999998876433221222344444443331  145688899999653

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.18  E-value=3.9e-11  Score=91.12  Aligned_cols=156  Identities=21%  Similarity=0.162  Sum_probs=87.1

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcC------CC-----CCccccc---------------eeeeEEEEEEEECC------
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDG------SF-----TTSFITT---------------IGIDFKIRTIELDG------   61 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~------~~-----~~~~~~~---------------~~~~~~~~~~~~~~------   61 (216)
                      ..+.|.|.|+||+|||||++.|...      .+     +++...+               .....+.+.+-..+      
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls  107 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS  107 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence            4579999999999999999998541      10     1111110               00112222222211      


Q ss_pred             ------------eEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 027949           62 ------------KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNK  129 (216)
Q Consensus        62 ------------~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  129 (216)
                                  -.+.+.|++|.|.-....   ....-+|.+++|......+..+.++.-+-++        .=++|+||
T Consensus       108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--------aDi~vVNK  176 (266)
T PF03308_consen  108 RATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAGIMEI--------ADIFVVNK  176 (266)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE-
T ss_pred             HhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhhhhhh--------ccEEEEeC
Confidence                        126788888887432222   2234589999998876655544444433233        23899999


Q ss_pred             CCCCCCCCccChHHHHHHHHHh-----C--CeEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 027949          130 ADMDESKRAVPTSKGQALADEY-----G--IKFFETSAKTNLNVEEVFFSIARDIKQRLA  182 (216)
Q Consensus       130 ~Dl~~~~~~~~~~~~~~~~~~~-----~--~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  182 (216)
                      +|.+.+.  ....+++......     +  .+++.+||.++.|++++++.|.++......
T Consensus       177 aD~~gA~--~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~~  234 (266)
T PF03308_consen  177 ADRPGAD--RTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYLKE  234 (266)
T ss_dssp             -SHHHHH--HHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHH--HHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence            9964322  2222333222211     1  489999999999999999999887666544

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.17  E-value=2.4e-11  Score=93.57  Aligned_cols=109  Identities=21%  Similarity=0.167  Sum_probs=70.1

Q ss_pred             EEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChH
Q 027949           63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTS  142 (216)
Q Consensus        63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~  142 (216)
                      .+.+.|++|.|.-....   ....-+|.+++|.-..-.+..+.++.-+-++-        =++|+||.|...++.  ...
T Consensus       143 G~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia--------Di~vINKaD~~~A~~--a~r  209 (323)
T COG1703         143 GYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEIA--------DIIVINKADRKGAEK--AAR  209 (323)
T ss_pred             CCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhhh--------heeeEeccChhhHHH--HHH
Confidence            36788889988543322   23345888888876665665555555433332        289999999644321  111


Q ss_pred             HHHHH-------HHHhCC--eEEEEecCCCCCHHHHHHHHHHHHHHHhhcc
Q 027949          143 KGQAL-------ADEYGI--KFFETSAKTNLNVEEVFFSIARDIKQRLADT  184 (216)
Q Consensus       143 ~~~~~-------~~~~~~--~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~  184 (216)
                      ++...       ....+|  +++.+||.+|+|++++++.|.++........
T Consensus       210 ~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~sg  260 (323)
T COG1703         210 ELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTESG  260 (323)
T ss_pred             HHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhcc
Confidence            11111       122233  8999999999999999999999887765554

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.17  E-value=2.2e-10  Score=89.34  Aligned_cols=55  Identities=18%  Similarity=0.140  Sum_probs=39.5

Q ss_pred             CcEEEEEeCCCCCCCCCccChHHHHHHHHHh--CCeEEEEecCCCCCHHHHHHHHHHH
Q 027949          121 VNKILVGNKADMDESKRAVPTSKGQALADEY--GIKFFETSAKTNLNVEEVFFSIARD  176 (216)
Q Consensus       121 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~  176 (216)
                      .+-++|+||+|+.+. .....+......+..  ..+++.+||++|+|++++.+||.+.
T Consensus       231 ~ADIVVLNKiDLl~~-~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        231 AASLMLLNKVDLLPY-LNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             cCcEEEEEhHHcCcc-cHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            456999999998642 122333344444443  3799999999999999999999763

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.17  E-value=1.1e-10  Score=96.06  Aligned_cols=168  Identities=26%  Similarity=0.395  Sum_probs=124.3

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+|+.|+|..++|||.|+.+++...+.....+..+  .+...+..++....+.+.|.+|.     ....|..++|++|||
T Consensus        30 elk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~-----~~aQft~wvdavIfv  102 (749)
T KOG0705|consen   30 ELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGH-----PDAQFCQWVDAVVFV  102 (749)
T ss_pred             hhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCC-----chhhhhhhccceEEE
Confidence            38999999999999999999998887654444333  45556667788888889999884     244556679999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCC-CCCccChHHHHHH-HHHhCCeEEEEecCCCCCHHHHHH
Q 027949           95 YDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDE-SKRAVPTSKGQAL-ADEYGIKFFETSAKTNLNVEEVFF  171 (216)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~gi~~l~~  171 (216)
                      |.+.+..++..+..+...+..+.. ..+|+++++++.-... ..+.+.....+.+ +....+.||++++.+|.++..+|.
T Consensus       103 f~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~  182 (749)
T KOG0705|consen  103 FSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQ  182 (749)
T ss_pred             EEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHH
Confidence            999999999999887777765443 3578888887754321 1223333344444 444558999999999999999999


Q ss_pred             HHHHHHHHHhhcccCCCC
Q 027949          172 SIARDIKQRLADTDSRAE  189 (216)
Q Consensus       172 ~l~~~i~~~~~~~~~~~~  189 (216)
                      .+...+...++.+.....
T Consensus       183 ~~~~k~i~~~~~qq~~~~  200 (749)
T KOG0705|consen  183 EVAQKIVQLRKYQQLPAS  200 (749)
T ss_pred             HHHHHHHHHHhhhhcccc
Confidence            999998888666554433

>smart00053 DYNc Dynamin, GTPase

Probab=99.16  E-value=3.5e-10  Score=86.47  Aligned_cols=68  Identities=15%  Similarity=0.219  Sum_probs=42.5

Q ss_pred             EEEEEEeCCCccc-------------cccccccccc-cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 027949           64 IKLQIWDTAGQER-------------FRTITTAYYR-GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNK  129 (216)
Q Consensus        64 ~~~~i~D~~G~~~-------------~~~~~~~~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  129 (216)
                      ..+.++|+||...             ...+...+++ ..+++++|+|+...-.-.....+.+.+.   +.+.|+++|+||
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld---~~~~rti~ViTK  201 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD---PQGERTIGVITK  201 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH---HcCCcEEEEEEC
Confidence            4788999999642             1123455666 4568999998865322222223333333   237899999999


Q ss_pred             CCCCC
Q 027949          130 ADMDE  134 (216)
Q Consensus       130 ~Dl~~  134 (216)
                      .|..+
T Consensus       202 ~D~~~  206 (240)
T smart00053      202 LDLMD  206 (240)
T ss_pred             CCCCC
Confidence            99754

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.16  E-value=7.4e-11  Score=91.47  Aligned_cols=166  Identities=18%  Similarity=0.161  Sum_probs=104.0

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCC---ccccceeeeE--EEEEE----------------EE--C----CeEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTT---SFITTIGIDF--KIRTI----------------EL--D----GKRIK   65 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~---~~~~~~~~~~--~~~~~----------------~~--~----~~~~~   65 (216)
                      ...++|.++|.-.-|||||.++|.+--...   +...+.+...  ....+                ..  .    .-...
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            345999999999999999999998722110   0001111000  00000                00  0    12257


Q ss_pred             EEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cChHHH
Q 027949           66 LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA-VPTSKG  144 (216)
Q Consensus        66 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~  144 (216)
                      +.|+|.||++-.-....+-..-.|++++|+.++.+.--.+..+-+..+.-..  -..++++=||+||...+++ .+.+++
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~qI  165 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQI  165 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHHH
Confidence            7899999997543333333344699999999987543333333223333322  3567888999999754332 334566


Q ss_pred             HHHHHH---hCCeEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027949          145 QALADE---YGIKFFETSAKTNLNVEEVFFSIARDIKQR  180 (216)
Q Consensus       145 ~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  180 (216)
                      ++|.+.   .+.+++++||..+.|||.++++|.+.+..-
T Consensus       166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP  204 (415)
T COG5257         166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTP  204 (415)
T ss_pred             HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence            666653   347999999999999999999998887653

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=99.15  E-value=7.6e-10  Score=91.19  Aligned_cols=124  Identities=18%  Similarity=0.186  Sum_probs=83.5

Q ss_pred             EEEEEEEE-CCeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCH----------hHHHHHHHHHHHHHHh-cCC
Q 027949           52 FKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----------SSFNNIRNWIRNIEQH-ASD  119 (216)
Q Consensus        52 ~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~-~~~  119 (216)
                      .....+.+ .+  ..+.++|.+|+...+.-|..++.+++++|||+++++.          ..+.+...++..+... .-.
T Consensus       225 i~e~~f~~~~~--~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~  302 (389)
T PF00503_consen  225 ITEIDFNFSGS--RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFK  302 (389)
T ss_dssp             EEEEEEEE-TT--EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGT
T ss_pred             eeEEEEEeecc--cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccc
Confidence            33445555 55  6789999999998889999999999999999998753          2244444445444432 224


Q ss_pred             CCcEEEEEeCCCCCC-----CC----------Cc--cChHHHHHHHHH------------hCCeEEEEecCCCCCHHHHH
Q 027949          120 NVNKILVGNKADMDE-----SK----------RA--VPTSKGQALADE------------YGIKFFETSAKTNLNVEEVF  170 (216)
Q Consensus       120 ~~p~ivv~nK~Dl~~-----~~----------~~--~~~~~~~~~~~~------------~~~~~~~~Sa~~~~gi~~l~  170 (216)
                      +.|++|++||.|+..     ..          ..  -..+.+..+...            ..+.+..++|.+...+..+|
T Consensus       303 ~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~  382 (389)
T PF00503_consen  303 NTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVF  382 (389)
T ss_dssp             TSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHH
T ss_pred             cCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHH
Confidence            789999999999721     00          11  233445555432            12356688999999999999


Q ss_pred             HHHHHHH
Q 027949          171 FSIARDI  177 (216)
Q Consensus       171 ~~l~~~i  177 (216)
                      +.+.+.|
T Consensus       383 ~~v~~~i  389 (389)
T PF00503_consen  383 NAVKDII  389 (389)
T ss_dssp             HHHHHHH
T ss_pred             HHhcCcC
Confidence            9887754

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.13  E-value=1.1e-09  Score=86.57  Aligned_cols=141  Identities=21%  Similarity=0.301  Sum_probs=83.5

Q ss_pred             CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCc----------cccceeeeEEEEEEEECCeEEEEEEEeCCCccc----
Q 027949           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTS----------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----   76 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----   76 (216)
                      .....+.|+++|+.|+|||||+|.|++......          ..++.........+.-++..+.++++||||.-.    
T Consensus        19 k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idN   98 (373)
T COG5019          19 KKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDN   98 (373)
T ss_pred             hcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccc
Confidence            346679999999999999999999998743322          224444555556666688889999999999211    


Q ss_pred             --------------ccc-------cccc-cc--ccccEEEEEEeCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCC
Q 027949           77 --------------FRT-------ITTA-YY--RGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKAD  131 (216)
Q Consensus        77 --------------~~~-------~~~~-~~--~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D  131 (216)
                                    ++.       ..+. .+  ..+|+++|.+..+. ..+..+. ..++.+..    ..-+|-|+.|+|
T Consensus        99 s~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~ls~----~vNlIPVI~KaD  173 (373)
T COG5019          99 SKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRLSK----RVNLIPVIAKAD  173 (373)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHHhc----ccCeeeeeeccc
Confidence                          000       0111 11  24688888887543 2222221 23333433    456788899999


Q ss_pred             CCC-CCCccChHHHHHHHHHhCCeEE
Q 027949          132 MDE-SKRAVPTSKGQALADEYGIKFF  156 (216)
Q Consensus       132 l~~-~~~~~~~~~~~~~~~~~~~~~~  156 (216)
                      ... .+.....+.++.....+++++|
T Consensus       174 ~lT~~El~~~K~~I~~~i~~~nI~vf  199 (373)
T COG5019         174 TLTDDELAEFKERIREDLEQYNIPVF  199 (373)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhCCcee
Confidence            632 1222222334444445555555

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.12  E-value=1.8e-09  Score=85.98  Aligned_cols=147  Identities=20%  Similarity=0.302  Sum_probs=89.5

Q ss_pred             CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCc---------cccceeeeEEEEEEEECCeEEEEEEEeCCCccc-----
Q 027949           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTS---------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-----   76 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-----   76 (216)
                      .....+.++|+|.+|.|||||+|.|+...+...         ...+.........+.-+|..+.++++||||...     
T Consensus        17 KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns   96 (366)
T KOG2655|consen   17 KKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNS   96 (366)
T ss_pred             hcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccc
Confidence            455679999999999999999999988754322         223445555555666678889999999999221     


Q ss_pred             --cc------------------cccccccc--cccEEEEEEeCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027949           77 --FR------------------TITTAYYR--GAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMD  133 (216)
Q Consensus        77 --~~------------------~~~~~~~~--~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~  133 (216)
                        |.                  .+.+.-+.  .+|+++|.+..+.- .+..+. ..+..+.    ....+|-|+.|+|..
T Consensus        97 ~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~----~~vNiIPVI~KaD~l  171 (366)
T KOG2655|consen   97 NCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS----KKVNLIPVIAKADTL  171 (366)
T ss_pred             ccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh----ccccccceeeccccC
Confidence              10                  01111222  57889998885432 112211 1223333    256788889999963


Q ss_pred             C-CCCccChHHHHHHHHHhCCeEEEEecCC
Q 027949          134 E-SKRAVPTSKGQALADEYGIKFFETSAKT  162 (216)
Q Consensus       134 ~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (216)
                      . .+.......+..-+...++.+|......
T Consensus       172 T~~El~~~K~~I~~~i~~~nI~vf~fp~~~  201 (366)
T KOG2655|consen  172 TKDELNQFKKRIRQDIEEHNIKVFDFPTDE  201 (366)
T ss_pred             CHHHHHHHHHHHHHHHHHcCcceecCCCCc
Confidence            2 2222333445555666677777655443

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.11  E-value=4.3e-10  Score=83.93  Aligned_cols=158  Identities=18%  Similarity=0.229  Sum_probs=93.3

Q ss_pred             CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCC---------ccccceeeeEEEEEEEECCeEEEEEEEeCCCccc---c
Q 027949           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTT---------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---F   77 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---~   77 (216)
                      .+..+.++|+|+|.+|.|||||+|.+....+..         ....+..+......+.-++...+++++||||...   .
T Consensus        41 mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN  120 (336)
T KOG1547|consen   41 MKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINN  120 (336)
T ss_pred             HhccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCc
Confidence            355678999999999999999999997644321         2223444445555566678788999999999321   1


Q ss_pred             cccc-----------------------ccccc--cccEEEEEEeCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCC
Q 027949           78 RTIT-----------------------TAYYR--GAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKAD  131 (216)
Q Consensus        78 ~~~~-----------------------~~~~~--~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D  131 (216)
                      ...|                       ...+.  .+|+++|.+..+. .++..+. ..++.+.+    -.-++-|+-|+|
T Consensus       121 ~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~----vvNvvPVIakaD  195 (336)
T KOG1547|consen  121 DNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE----VVNVVPVIAKAD  195 (336)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh----hheeeeeEeecc
Confidence            1111                       12222  3567777776553 2222221 12333332    345777889999


Q ss_pred             C-CCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949          132 M-DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS  172 (216)
Q Consensus       132 l-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  172 (216)
                      - .=+++....+.++.-...+++.+++-.+.+-+.-+..++.
T Consensus       196 tlTleEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~  237 (336)
T KOG1547|consen  196 TLTLEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLND  237 (336)
T ss_pred             cccHHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHH
Confidence            3 2222333344455556677888887776655444444443

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.09  E-value=9.9e-10  Score=95.31  Aligned_cols=129  Identities=18%  Similarity=0.148  Sum_probs=93.0

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCC------------------CCccccceeeeEEEEEEEECCeEEEEEEEeCCC
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSF------------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG   73 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   73 (216)
                      .+..-+|.|+|.-++|||||..+|+...-                  ..+...+.++.....++.+.+ .+.++++||||
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPG   85 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPG   85 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCC
Confidence            45567899999999999999999865211                  012234455666666777775 47899999999


Q ss_pred             ccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHH
Q 027949           74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQ  145 (216)
Q Consensus        74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~  145 (216)
                      +-.|-......++-+|++++|+|+...-....-.-|.+...    .+.|.++++||+|...+......+++.
T Consensus        86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~----~~vp~i~fiNKmDR~~a~~~~~~~~l~  153 (697)
T COG0480          86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK----YGVPRILFVNKMDRLGADFYLVVEQLK  153 (697)
T ss_pred             ccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh----cCCCeEEEEECccccccChhhhHHHHH
Confidence            99999889999999999999999987654444333443332    278999999999976544443444333

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=1.4e-09  Score=87.82  Aligned_cols=152  Identities=23%  Similarity=0.188  Sum_probs=104.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCC---CccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFT---TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      -|+..|.-.-|||||++.+.+....   .....+.+.+.........+  ..+.|+|.||++.+-.....-+...|.+++
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d--~~~~fIDvpgh~~~i~~miag~~~~d~alL   79 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED--GVMGFIDVPGHPDFISNLLAGLGGIDYALL   79 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC--CceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence            4678899999999999999987643   33445555555555444444  588999999998877766666778999999


Q ss_pred             EEeCCCH---hHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHH---HHhCCeEEEEecCCCCCHH
Q 027949           94 VYDVTDE---SSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALA---DEYGIKFFETSAKTNLNVE  167 (216)
Q Consensus        94 v~d~~~~---~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~gi~  167 (216)
                      |++.++.   ++.+.+    ..+ .... ....++|+||+|..++.+  ..+......   .....++|.+|+.+|+||+
T Consensus        80 vV~~deGl~~qtgEhL----~iL-dllg-i~~giivltk~D~~d~~r--~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~  151 (447)
T COG3276          80 VVAADEGLMAQTGEHL----LIL-DLLG-IKNGIIVLTKADRVDEAR--IEQKIKQILADLSLANAKIFKTSAKTGRGIE  151 (447)
T ss_pred             EEeCccCcchhhHHHH----HHH-HhcC-CCceEEEEeccccccHHH--HHHHHHHHHhhcccccccccccccccCCCHH
Confidence            9999643   333333    112 2221 234589999999865331  112222222   2233688999999999999


Q ss_pred             HHHHHHHHHHH
Q 027949          168 EVFFSIARDIK  178 (216)
Q Consensus       168 ~l~~~l~~~i~  178 (216)
                      +|.+.|.+...
T Consensus       152 ~Lk~~l~~L~~  162 (447)
T COG3276         152 ELKNELIDLLE  162 (447)
T ss_pred             HHHHHHHHhhh
Confidence            99999998875

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.02  E-value=5.4e-09  Score=80.41  Aligned_cols=141  Identities=19%  Similarity=0.184  Sum_probs=92.4

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHc----------------CCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccc
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSD----------------GSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER   76 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   76 (216)
                      ...++|..+|.-+-|||||..+++.                ...+.+...+.++......++..+  ..+..+|+||+..
T Consensus        10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~--rhyahVDcPGHaD   87 (394)
T COG0050          10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETAN--RHYAHVDCPGHAD   87 (394)
T ss_pred             CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCC--ceEEeccCCChHH
Confidence            4569999999999999999988754                112233344455444444444455  5567789999988


Q ss_pred             cccccccccccccEEEEEEeCCCH---hHHHHHHHHHHHHHHhcCCCCcE-EEEEeCCCCCCCCCc--cChHHHHHHHHH
Q 027949           77 FRTITTAYYRGAMGILLVYDVTDE---SSFNNIRNWIRNIEQHASDNVNK-ILVGNKADMDESKRA--VPTSKGQALADE  150 (216)
Q Consensus        77 ~~~~~~~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~~~--~~~~~~~~~~~~  150 (216)
                      |-.....-..+.|+.|+|+++.+.   .+-+++     .+.+.-  +.|. ++++||+|+.+....  .-..+.+++...
T Consensus        88 YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHi-----Llarqv--Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~  160 (394)
T COG0050          88 YVKNMITGAAQMDGAILVVAATDGPMPQTREHI-----LLARQV--GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSE  160 (394)
T ss_pred             HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhh-----hhhhhc--CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHH
Confidence            876666666789999999999884   332222     122221  5655 555899999763221  112446777777


Q ss_pred             hC-----CeEEEEecCC
Q 027949          151 YG-----IKFFETSAKT  162 (216)
Q Consensus       151 ~~-----~~~~~~Sa~~  162 (216)
                      ++     .|++.-||..
T Consensus       161 y~f~gd~~Pii~gSal~  177 (394)
T COG0050         161 YGFPGDDTPIIRGSALK  177 (394)
T ss_pred             cCCCCCCcceeechhhh
Confidence            76     5788888765

>cd01855 YqeH YqeH

Probab=98.96  E-value=3.9e-09  Score=78.48  Aligned_cols=94  Identities=22%  Similarity=0.204  Sum_probs=64.4

Q ss_pred             cccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHH-----HHh
Q 027949           77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALA-----DEY  151 (216)
Q Consensus        77 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~  151 (216)
                      +...+..+++.+|++++|+|+.++...     |...+.... .+.|+++|+||+|+.+.  .........+.     ...
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~~-~~~~~ilV~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~   95 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLFG-GNNPVILVGNKIDLLPK--DKNLVRIKNWLRAKAAAGL   95 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHhc-CCCcEEEEEEchhcCCC--CCCHHHHHHHHHHHHHhhc
Confidence            466778888999999999999876421     112222222 36899999999998642  22233333333     223


Q ss_pred             CC---eEEEEecCCCCCHHHHHHHHHHHHH
Q 027949          152 GI---KFFETSAKTNLNVEEVFFSIARDIK  178 (216)
Q Consensus       152 ~~---~~~~~Sa~~~~gi~~l~~~l~~~i~  178 (216)
                      +.   .++.+||++|.|+++++++|.+.+.
T Consensus        96 ~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          96 GLKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             CCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            32   6899999999999999999988763

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=98.95  E-value=5e-09  Score=88.34  Aligned_cols=119  Identities=25%  Similarity=0.282  Sum_probs=84.7

Q ss_pred             CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccc-----------------cceeeeEEEEEE---EECCeEEEEEEE
Q 027949           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFI-----------------TTIGIDFKIRTI---ELDGKRIKLQIW   69 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-----------------~~~~~~~~~~~~---~~~~~~~~~~i~   69 (216)
                      .......+|+++|.-++|||+|+..|..+..+..+.                 .+.+......++   ..++.++-+++.
T Consensus       123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil  202 (971)
T KOG0468|consen  123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL  202 (971)
T ss_pred             cCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeee
Confidence            355677899999999999999999997755432111                 112222222222   225677889999


Q ss_pred             eCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 027949           70 DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADM  132 (216)
Q Consensus        70 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  132 (216)
                      ||||+-.|.......++.+|++++++|+-+.-.+..-.-..+.+    ....|+++|+||.|.
T Consensus       203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhai----q~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAI----QNRLPIVVVINKVDR  261 (971)
T ss_pred             cCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHH----hccCcEEEEEehhHH
Confidence            99999888888888889999999999998775554432222222    236899999999995

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.95  E-value=8.4e-08  Score=72.42  Aligned_cols=110  Identities=21%  Similarity=0.190  Sum_probs=77.4

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccc-------cccccccc
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------TITTAYYR   86 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~   86 (216)
                      -..+|+++|.|.+|||||+..++.-.........++.++....+.+++  ..+++.|.||.-+-.       ...-...+
T Consensus        61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavAr  138 (364)
T KOG1486|consen   61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVAR  138 (364)
T ss_pred             CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEee
Confidence            347899999999999999999987665544445566788889999999  678889999954322       23445567


Q ss_pred             cccEEEEEEeCCCHhHHHH-HHHHHHHHHHhcCCCCcEEE
Q 027949           87 GAMGILLVYDVTDESSFNN-IRNWIRNIEQHASDNVNKIL  125 (216)
Q Consensus        87 ~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~p~iv  125 (216)
                      .+|.+++|.|++..+.-.. ++..+..+--+.....|-+-
T Consensus       139 taDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy  178 (364)
T KOG1486|consen  139 TADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIY  178 (364)
T ss_pred             cccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeE
Confidence            8999999999988765443 34455554333333344433

>PRK12289 GTPase RsgA; Reviewed

Probab=98.94  E-value=6e-09  Score=84.15  Aligned_cols=91  Identities=18%  Similarity=0.250  Sum_probs=66.2

Q ss_pred             cccccccccccEEEEEEeCCCHh-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEE
Q 027949           79 TITTAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFE  157 (216)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  157 (216)
                      .+.+..+.++|.+++|+|+.++. ....+..|+..+..   .+.|++||+||+||.+...   ...........+..++.
T Consensus        81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~---~~~~~~~~~~~g~~v~~  154 (352)
T PRK12289         81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTE---QQQWQDRLQQWGYQPLF  154 (352)
T ss_pred             ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHH---HHHHHHHHHhcCCeEEE
Confidence            34555688999999999998876 44455667655532   3789999999999853211   12223333466789999


Q ss_pred             EecCCCCCHHHHHHHHHH
Q 027949          158 TSAKTNLNVEEVFFSIAR  175 (216)
Q Consensus       158 ~Sa~~~~gi~~l~~~l~~  175 (216)
                      +||.++.|+++|+++|..
T Consensus       155 iSA~tg~GI~eL~~~L~~  172 (352)
T PRK12289        155 ISVETGIGLEALLEQLRN  172 (352)
T ss_pred             EEcCCCCCHHHHhhhhcc
Confidence            999999999999998864

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.93  E-value=7.1e-09  Score=82.09  Aligned_cols=122  Identities=20%  Similarity=0.251  Sum_probs=81.0

Q ss_pred             CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccc-cceeeeEEEEEEEECCeE-------------------------
Q 027949           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFI-TTIGIDFKIRTIELDGKR-------------------------   63 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------------------------   63 (216)
                      .+.+....|+++|.-..||||||+.|+.++++.... +..++++....+.-+...                         
T Consensus        53 ~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~af  132 (532)
T KOG1954|consen   53 PDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAF  132 (532)
T ss_pred             cccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHH
Confidence            445566889999999999999999999999885443 333344555444332111                         


Q ss_pred             --------------EEEEEEeCCCccc-----------cccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcC
Q 027949           64 --------------IKLQIWDTAGQER-----------FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS  118 (216)
Q Consensus        64 --------------~~~~i~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~  118 (216)
                                    -.++|+||||.-+           |.....=|...+|.+|++||.---+--.+....+..+.   .
T Consensus       133 lnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLk---G  209 (532)
T KOG1954|consen  133 LNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALK---G  209 (532)
T ss_pred             HHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhh---C
Confidence                          1678999999432           22223345568999999999755443344444444443   3


Q ss_pred             CCCcEEEEEeCCCCCC
Q 027949          119 DNVNKILVGNKADMDE  134 (216)
Q Consensus       119 ~~~p~ivv~nK~Dl~~  134 (216)
                      +.-.+-||+||+|..+
T Consensus       210 ~EdkiRVVLNKADqVd  225 (532)
T KOG1954|consen  210 HEDKIRVVLNKADQVD  225 (532)
T ss_pred             CcceeEEEeccccccC
Confidence            3567889999999765

>PRK12288 GTPase RsgA; Reviewed

Probab=98.92  E-value=8.8e-09  Score=83.15  Aligned_cols=88  Identities=19%  Similarity=0.214  Sum_probs=66.2

Q ss_pred             cccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCC
Q 027949           85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL  164 (216)
Q Consensus        85 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (216)
                      ..++|.+++|++.....++..+..|+..+..   .+.|+++|+||+||.+.................+.+++++||+++.
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~  194 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE  194 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            4579999999999877788888888775543   3689999999999964221111222333345667899999999999


Q ss_pred             CHHHHHHHHHH
Q 027949          165 NVEEVFFSIAR  175 (216)
Q Consensus       165 gi~~l~~~l~~  175 (216)
                      |+++++++|..
T Consensus       195 GideL~~~L~~  205 (347)
T PRK12288        195 GLEELEAALTG  205 (347)
T ss_pred             CHHHHHHHHhh
Confidence            99999998864

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.92  E-value=7.2e-09  Score=81.90  Aligned_cols=88  Identities=15%  Similarity=0.142  Sum_probs=66.9

Q ss_pred             ccccccccEEEEEEeCCCHh-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEec
Q 027949           82 TAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSA  160 (216)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (216)
                      ...+.++|.+++|+|+.++. ++..+..|+..+...   +.|+++|+||+||.+.   ........+....+.+++.+||
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~---~~~~~~~~~~~~~g~~v~~vSA  146 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDD---EEEELELVEALALGYPVLAVSA  146 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCCh---HHHHHHHHHHHhCCCeEEEEEC
Confidence            33478899999999999987 777888887766543   6899999999998542   1112223334456789999999


Q ss_pred             CCCCCHHHHHHHHHH
Q 027949          161 KTNLNVEEVFFSIAR  175 (216)
Q Consensus       161 ~~~~gi~~l~~~l~~  175 (216)
                      +++.|+++++.+|..
T Consensus       147 ~~g~gi~~L~~~L~~  161 (287)
T cd01854         147 KTGEGLDELREYLKG  161 (287)
T ss_pred             CCCccHHHHHhhhcc
Confidence            999999999888763

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd01859 MJ1464 MJ1464

Probab=98.91  E-value=4.3e-09  Score=75.73  Aligned_cols=94  Identities=21%  Similarity=0.184  Sum_probs=62.8

Q ss_pred             ccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEE
Q 027949           78 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFE  157 (216)
Q Consensus        78 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  157 (216)
                      +.+....++++|++++|+|+.++..... ..+...+.   ..+.|+++|+||+|+.+..   .......+....+.+++.
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~   75 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL---ELGKKLLIVLNKADLVPKE---VLEKWKSIKESEGIPVVY   75 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH---hCCCcEEEEEEhHHhCCHH---HHHHHHHHHHhCCCcEEE
Confidence            3455666778999999999987643222 11222221   1268999999999985311   111122333445678999


Q ss_pred             EecCCCCCHHHHHHHHHHHHH
Q 027949          158 TSAKTNLNVEEVFFSIARDIK  178 (216)
Q Consensus       158 ~Sa~~~~gi~~l~~~l~~~i~  178 (216)
                      +||+++.|++++++.|.+.+.
T Consensus        76 iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          76 VSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             EEccccccHHHHHHHHHHHHh
Confidence            999999999999999987764

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=98.91  E-value=1.3e-08  Score=82.18  Aligned_cols=128  Identities=16%  Similarity=0.198  Sum_probs=82.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc--CCC--------------C------CccccceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSD--GSF--------------T------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   74 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~--~~~--------------~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   74 (216)
                      ..+|+-.|.+|||||..+|+-  +..              .      -+...+......+..+.+++  ..++|.||||+
T Consensus        14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~--~~iNLLDTPGH   91 (528)
T COG4108          14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYAD--CLVNLLDTPGH   91 (528)
T ss_pred             ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCC--eEEeccCCCCc
Confidence            458999999999999999854  100              0      01122333333344444454  88999999999


Q ss_pred             cccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC
Q 027949           75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI  153 (216)
Q Consensus        75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  153 (216)
                      +.|..-...-+.-+|.+++|+|+...-.- +..+++.... .  .++|++-++||.|-..   ....+.+.++-..+++
T Consensus        92 eDFSEDTYRtLtAvDsAvMVIDaAKGiE~-qT~KLfeVcr-l--R~iPI~TFiNKlDR~~---rdP~ELLdEiE~~L~i  163 (528)
T COG4108          92 EDFSEDTYRTLTAVDSAVMVIDAAKGIEP-QTLKLFEVCR-L--RDIPIFTFINKLDREG---RDPLELLDEIEEELGI  163 (528)
T ss_pred             cccchhHHHHHHhhheeeEEEecccCccH-HHHHHHHHHh-h--cCCceEEEeecccccc---CChHHHHHHHHHHhCc
Confidence            98887777777789999999998654322 2223332222 2  3799999999999532   3344555555555553

>PRK00098 GTPase RsgA; Reviewed

Probab=98.88  E-value=1.1e-08  Score=81.21  Aligned_cols=86  Identities=20%  Similarity=0.216  Sum_probs=63.2

Q ss_pred             ccccccEEEEEEeCCCHhHHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCC
Q 027949           84 YYRGAMGILLVYDVTDESSFNN-IRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT  162 (216)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (216)
                      ...++|++++|+|+.++..... +..|+..+..   .+.|+++|+||+|+.+.  ..............+.+++++||++
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~--~~~~~~~~~~~~~~g~~v~~vSA~~  151 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDD--LEEARELLALYRAIGYDVLELSAKE  151 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCC--HHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            3588999999999988865444 4556655543   36899999999998531  1122233444556678999999999


Q ss_pred             CCCHHHHHHHHH
Q 027949          163 NLNVEEVFFSIA  174 (216)
Q Consensus       163 ~~gi~~l~~~l~  174 (216)
                      +.|+++++.+|.
T Consensus       152 g~gi~~L~~~l~  163 (298)
T PRK00098        152 GEGLDELKPLLA  163 (298)
T ss_pred             CccHHHHHhhcc
Confidence            999999998774

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.79  E-value=1.6e-08  Score=71.53  Aligned_cols=53  Identities=25%  Similarity=0.268  Sum_probs=38.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCC-ccccceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   74 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   74 (216)
                      +++|+|.+|+|||||+|++++..... ...++  .+.....+..++   .+.+|||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPG--KTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCC--cccceEEEEeCC---CEEEEECCCc
Confidence            89999999999999999999877542 22222  233344455554   5789999996

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.77  E-value=8.2e-08  Score=72.85  Aligned_cols=128  Identities=16%  Similarity=0.173  Sum_probs=83.8

Q ss_pred             EEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCH----------hHHHHHHHHHHHHHHhc-CCC
Q 027949           52 FKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----------SSFNNIRNWIRNIEQHA-SDN  120 (216)
Q Consensus        52 ~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~-~~~  120 (216)
                      .....++++.  ++++.+|.+|+..-+.-|...+....++|||+..+..          ..+.+...++..++.++ -..
T Consensus       192 Ifet~FqVdk--v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~t  269 (379)
T KOG0099|consen  192 IFETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRT  269 (379)
T ss_pred             eeeEEEeccc--cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhh
Confidence            4444555555  7899999999988888899999999999999987652          22344444555554432 235


Q ss_pred             CcEEEEEeCCCCCCC-----------------------------CCccChHHHHHHHHH-------------hCCeEEEE
Q 027949          121 VNKILVGNKADMDES-----------------------------KRAVPTSKGQALADE-------------YGIKFFET  158 (216)
Q Consensus       121 ~p~ivv~nK~Dl~~~-----------------------------~~~~~~~~~~~~~~~-------------~~~~~~~~  158 (216)
                      +.+++++||.|+..+                             ......-.++-|.+.             +-+-+.++
T Consensus       270 isvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFT  349 (379)
T KOG0099|consen  270 ISVILFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFT  349 (379)
T ss_pred             hheeEEecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceeccccee
Confidence            778999999997221                             000001111112111             11456688


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHh
Q 027949          159 SAKTNLNVEEVFFSIARDIKQRL  181 (216)
Q Consensus       159 Sa~~~~gi~~l~~~l~~~i~~~~  181 (216)
                      .|.+.++|..+|+...+.+....
T Consensus       350 cAvDTenIrrVFnDcrdiIqr~h  372 (379)
T KOG0099|consen  350 CAVDTENIRRVFNDCRDIIQRMH  372 (379)
T ss_pred             EeechHHHHHHHHHHHHHHHHHH
Confidence            89999999999999887776543

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.76  E-value=7.8e-08  Score=72.17  Aligned_cols=169  Identities=18%  Similarity=0.230  Sum_probs=98.1

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc---ccccccccccE
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT---ITTAYYRGAMG   90 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~   90 (216)
                      ...+|+++|...+||||+-+....+-.+.+......+.. ...-.+.+.-+.+.+||.||+-.+-.   -....++.+.+
T Consensus        26 ~kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTsk-i~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gA  104 (347)
T KOG3887|consen   26 MKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSK-ITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGA  104 (347)
T ss_pred             CCceEEEEeecccCcchhhheeeeccCCCceeEeeccCc-ccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCe
Confidence            336799999999999998877776543322211111000 00001223447899999999754322   13456788999


Q ss_pred             EEEEEeCCCHhHHHHHHHHHHHHHHh--cCCCCcEEEEEeCCCCCCCCCccC-hHHHHHH----HHH-----hCCeEEEE
Q 027949           91 ILLVYDVTDESSFNNIRNWIRNIEQH--ASDNVNKILVGNKADMDESKRAVP-TSKGQAL----ADE-----YGIKFFET  158 (216)
Q Consensus        91 ~i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~~~----~~~-----~~~~~~~~  158 (216)
                      +|||+|+.+.. ++.+..+...+...  -.+++.+=|.+.|.|...+...+. ...+..-    ...     ..+.|+.+
T Consensus       105 LifvIDaQddy-~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LT  183 (347)
T KOG3887|consen  105 LIFVIDAQDDY-MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLT  183 (347)
T ss_pred             EEEEEechHHH-HHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEe
Confidence            99999996542 22222222222221  124677788899999543222221 1111111    111     22578888


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHhhccc
Q 027949          159 SAKTNLNVEEVFFSIARDIKQRLADTD  185 (216)
Q Consensus       159 Sa~~~~gi~~l~~~l~~~i~~~~~~~~  185 (216)
                      |..+- +|-+.|..+++.+..+..-.+
T Consensus       184 SIyDH-SIfEAFSkvVQkLipqLptLE  209 (347)
T KOG3887|consen  184 SIYDH-SIFEAFSKVVQKLIPQLPTLE  209 (347)
T ss_pred             eecch-HHHHHHHHHHHHHhhhchhHH
Confidence            87654 788899998888887765543

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.75  E-value=9.2e-09  Score=78.55  Aligned_cols=155  Identities=19%  Similarity=0.162  Sum_probs=89.4

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCcccc-ceeeeEEEEEEEECCeEEEEEEEeCCCc----------cccccc
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFIT-TIGIDFKIRTIELDGKRIKLQIWDTAGQ----------ERFRTI   80 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~   80 (216)
                      .+...+++++|.+|+|||+|++.+........... ..+.......+.+..   .+.++|.||.          ..+..+
T Consensus       133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~~  209 (320)
T KOG2486|consen  133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDKF  209 (320)
T ss_pred             CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhHh
Confidence            45568999999999999999999987654422222 333334444455554   5677899991          123334


Q ss_pred             ccccccc---ccEEEEEEeCCCHh--HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC----ccC------hHHHH
Q 027949           81 TTAYYRG---AMGILLVYDVTDES--SFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR----AVP------TSKGQ  145 (216)
Q Consensus        81 ~~~~~~~---~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~------~~~~~  145 (216)
                      ...++.+   .--+++++|++-+-  .-.....|+   .+   .+.|+.+|.||+|-.....    ...      ...+-
T Consensus       210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~---ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~  283 (320)
T KOG2486|consen  210 TKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWL---GE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLI  283 (320)
T ss_pred             HHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHH---hh---cCCCeEEeeehhhhhhhccccccCccccceeehhhcc
Confidence            4444322   22345566665431  111122232   22   2799999999999632111    011      11111


Q ss_pred             HHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q 027949          146 ALADEYGIKFFETSAKTNLNVEEVFFSIAR  175 (216)
Q Consensus       146 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  175 (216)
                      ........+++.+|+.++.|++.|.-.+.+
T Consensus       284 ~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  284 RGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             ccceeccCCceeeecccccCceeeeeehhh
Confidence            112222357889999999999988665543

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.73  E-value=1.3e-07  Score=75.38  Aligned_cols=160  Identities=20%  Similarity=0.151  Sum_probs=94.8

Q ss_pred             CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCC--------------ccccceeeeEEEEEEEECCe-------------
Q 027949           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTT--------------SFITTIGIDFKIRTIELDGK-------------   62 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~-------------   62 (216)
                      ++....+.|.++|.-+.|||||+-.|.-...+.              +...+.+.+.....+-+++.             
T Consensus       112 ~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE  191 (527)
T COG5258         112 EEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAE  191 (527)
T ss_pred             cCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHH
Confidence            345566999999999999999998886644321              11112222233333322211             


Q ss_pred             --------EEEEEEEeCCCccccccc--cccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 027949           63 --------RIKLQIWDTAGQERFRTI--TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADM  132 (216)
Q Consensus        63 --------~~~~~i~D~~G~~~~~~~--~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  132 (216)
                              ..-+.++|+.|++.|-..  ...+-.+.|..++++.+++..+-..-+- + .+..  .-..|++++++|+|+
T Consensus       192 ~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEH-L-gi~~--a~~lPviVvvTK~D~  267 (527)
T COG5258         192 KAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEH-L-GIAL--AMELPVIVVVTKIDM  267 (527)
T ss_pred             HhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHh-h-hhhh--hhcCCEEEEEEeccc
Confidence                    135678899999877542  2334457899999999988654222111 1 1111  126899999999999


Q ss_pred             CCCCCc-cChHHHHHH----------------------HHHhC---CeEEEEecCCCCCHHHHHHHH
Q 027949          133 DESKRA-VPTSKGQAL----------------------ADEYG---IKFFETSAKTNLNVEEVFFSI  173 (216)
Q Consensus       133 ~~~~~~-~~~~~~~~~----------------------~~~~~---~~~~~~Sa~~~~gi~~l~~~l  173 (216)
                      .++.+. --.+++..+                      +.+.+   +|+|.+|+.+|+|++-|.+.+
T Consensus       268 ~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f  334 (527)
T COG5258         268 VPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF  334 (527)
T ss_pred             CcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH
Confidence            653321 011111111                      11222   599999999999987554433

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.73  E-value=4e-08  Score=71.76  Aligned_cols=57  Identities=21%  Similarity=0.325  Sum_probs=40.6

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   74 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   74 (216)
                      ...++++|+|.||+|||||+|+|.+.... ....++.+.  ....+..+.   .+.++||||.
T Consensus       115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~--~~~~~~~~~---~~~l~DtPGi  172 (172)
T cd04178         115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTK--SMQEVHLDK---KVKLLDSPGI  172 (172)
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEc--ceEEEEeCC---CEEEEECcCC
Confidence            33489999999999999999999987653 334444443  333444443   5788999983

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.71  E-value=4.5e-08  Score=79.77  Aligned_cols=95  Identities=24%  Similarity=0.309  Sum_probs=67.8

Q ss_pred             ccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHH----HHHH
Q 027949           74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQ----ALAD  149 (216)
Q Consensus        74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----~~~~  149 (216)
                      .+.|..+...+.+.++++++|+|+.+...     .|...+.+... +.|+++|+||+|+.+.  ....+.+.    +++.
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~~-~~piilV~NK~DLl~k--~~~~~~~~~~l~~~~k  121 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFVG-GNPVLLVGNKIDLLPK--SVNLSKIKEWMKKRAK  121 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHhC-CCCEEEEEEchhhCCC--CCCHHHHHHHHHHHHH
Confidence            45677777888889999999999976541     23334443332 5799999999998642  22233333    3456


Q ss_pred             HhCC---eEEEEecCCCCCHHHHHHHHHHH
Q 027949          150 EYGI---KFFETSAKTNLNVEEVFFSIARD  176 (216)
Q Consensus       150 ~~~~---~~~~~Sa~~~~gi~~l~~~l~~~  176 (216)
                      ..++   .++.+||++|.|++++++.|.+.
T Consensus       122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       122 ELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             HcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            6675   58999999999999999998654

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>TIGR00092 GTP-binding protein YchF

Probab=98.70  E-value=4.6e-08  Score=78.94  Aligned_cols=83  Identities=18%  Similarity=0.025  Sum_probs=62.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCC-CCccccceeeeEEEEEEEECCeE---------------EEEEEEeCCCcccc--
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQERF--   77 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~--   77 (216)
                      +++.|+|.|++|||||++.|++... ...+.|..+.+.....+.+.+..               ..+.+.|.||.-.-  
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999999887 55555767677777777765432               36788999995331  


Q ss_pred             -----ccccccccccccEEEEEEeCC
Q 027949           78 -----RTITTAYYRGAMGILLVYDVT   98 (216)
Q Consensus        78 -----~~~~~~~~~~~d~~i~v~d~~   98 (216)
                           .......++.+|++++|++..
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence                 112333467899999999985

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>cd01858 NGP_1 NGP-1

Probab=98.69  E-value=6.2e-08  Score=69.79  Aligned_cols=55  Identities=22%  Similarity=0.225  Sum_probs=37.4

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   74 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   74 (216)
                      .++|+++|.+|+|||||+|+|.+.... ....++.+  .....+..+.   .+.++||||.
T Consensus       102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T--~~~~~~~~~~---~~~liDtPGi  157 (157)
T cd01858         102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGET--KVWQYITLMK---RIYLIDCPGV  157 (157)
T ss_pred             ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCee--EeEEEEEcCC---CEEEEECcCC
Confidence            478999999999999999999986543 23334333  2233333332   3678899983

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.69  E-value=1.1e-07  Score=75.70  Aligned_cols=185  Identities=14%  Similarity=0.156  Sum_probs=103.4

Q ss_pred             CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccc-----------------------cceeeeEEEEEEEEC------
Q 027949           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFI-----------------------TTIGIDFKIRTIELD------   60 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~------   60 (216)
                      .+.-..++++|+|.-.+|||||+-.|...+.+....                       ...+.+-....+.+.      
T Consensus       162 ~QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taE  241 (591)
T KOG1143|consen  162 SQQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAE  241 (591)
T ss_pred             cccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHH
Confidence            344566999999999999999998876644321100                       011111111112221      


Q ss_pred             ----CeEEEEEEEeCCCccccccccccccc--cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949           61 ----GKRIKLQIWDTAGQERFRTITTAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE  134 (216)
Q Consensus        61 ----~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (216)
                          ....-++++|.+|+..|......-+.  .-|..++|+++...-.+..-+- +..+.   ..+.|++++++|+|+.+
T Consensus       242 Ei~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEH-Lgl~~---AL~iPfFvlvtK~Dl~~  317 (591)
T KOG1143|consen  242 EIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREH-LGLIA---ALNIPFFVLVTKMDLVD  317 (591)
T ss_pred             HHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHH-HHHHH---HhCCCeEEEEEeecccc
Confidence                12346788999999888764433322  2477888998877654433211 11111   12799999999999965


Q ss_pred             CCC-----------------------ccChHHHHHHHHH----hCCeEEEEecCCCCCHHHHHH--HHHHHHHHHhhccc
Q 027949          135 SKR-----------------------AVPTSKGQALADE----YGIKFFETSAKTNLNVEEVFF--SIARDIKQRLADTD  185 (216)
Q Consensus       135 ~~~-----------------------~~~~~~~~~~~~~----~~~~~~~~Sa~~~~gi~~l~~--~l~~~i~~~~~~~~  185 (216)
                      ...                       ....+++...+.+    +-.|+|.+|+..|+|++-+..  .++......-++.+
T Consensus       318 ~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fLn~Lsp~~~~~e~~~  397 (591)
T KOG1143|consen  318 RQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFLNCLSPAGTAEERIQ  397 (591)
T ss_pred             chhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHHhhcCCcCChHHHHH
Confidence            210                       1122222222222    225999999999999775532  23332323333334


Q ss_pred             CCCCCccccccCC
Q 027949          186 SRAEPQTIKINQP  198 (216)
Q Consensus       186 ~~~~~~~~~~~~~  198 (216)
                      ....+.-+.+++.
T Consensus       398 L~q~~~eFqvdEi  410 (591)
T KOG1143|consen  398 LVQLPAEFQVDEI  410 (591)
T ss_pred             HhcCcceeeHhHe
Confidence            4445555555554

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.66  E-value=8.5e-08  Score=75.26  Aligned_cols=87  Identities=18%  Similarity=0.187  Sum_probs=66.9

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECC---------------eEEEEEEEeCCCccc-
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG---------------KRIKLQIWDTAGQER-   76 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~D~~G~~~-   76 (216)
                      .+.+++.+||.|++|||||+|.|++......+.|..+++.....+.+..               ....++++|++|.-. 
T Consensus        18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG   97 (391)
T KOG1491|consen   18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG   97 (391)
T ss_pred             CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence            3558999999999999999999999998888889888888887766522               235789999988432 


Q ss_pred             ---ccccc---ccccccccEEEEEEeCCC
Q 027949           77 ---FRTIT---TAYYRGAMGILLVYDVTD   99 (216)
Q Consensus        77 ---~~~~~---~~~~~~~d~~i~v~d~~~   99 (216)
                         -..+-   .+-++.+|+++.|+++..
T Consensus        98 As~G~GLGN~FLs~iR~vDaifhVVr~f~  126 (391)
T KOG1491|consen   98 ASAGEGLGNKFLSHIRHVDAIFHVVRAFE  126 (391)
T ss_pred             cccCcCchHHHHHhhhhccceeEEEEecC
Confidence               22223   334578999999998754

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.64  E-value=2.1e-07  Score=66.85  Aligned_cols=87  Identities=23%  Similarity=0.131  Sum_probs=56.1

Q ss_pred             cEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHH
Q 027949           89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE  168 (216)
Q Consensus        89 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (216)
                      |++++|+|+.++.+...  .++.. ......+.|+++|+||+|+.+..  ........+....+..++.+||+++.|+++
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~--~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~   75 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKE--VLRKWLAYLRHSYPTIPFKISATNGQGIEK   75 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHH--HHHHHHHHHHhhCCceEEEEeccCCcChhh
Confidence            68999999988764432  12221 11122368999999999985321  111112223233356789999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027949          169 VFFSIARDIKQR  180 (216)
Q Consensus       169 l~~~l~~~i~~~  180 (216)
                      +++.|.+...+.
T Consensus        76 L~~~i~~~~~~~   87 (155)
T cd01849          76 KESAFTKQTNSN   87 (155)
T ss_pred             HHHHHHHHhHHH
Confidence            999998775443

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01858 NGP_1 NGP-1

Probab=98.63  E-value=1.6e-07  Score=67.62  Aligned_cols=89  Identities=17%  Similarity=0.207  Sum_probs=57.3

Q ss_pred             ccccccEEEEEEeCCCHhH--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecC
Q 027949           84 YYRGAMGILLVYDVTDESS--FNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK  161 (216)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (216)
                      .+..+|++++|+|+.++..  ...+..++.   . ...+.|+++|+||+|+.+..  ........+...+...++.+||+
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~---~-~~~~~p~ilVlNKiDl~~~~--~~~~~~~~~~~~~~~~~~~iSa~   78 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLK---K-EKPHKHLIFVLNKCDLVPTW--VTARWVKILSKEYPTIAFHASIN   78 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccCHHHHHHHH---h-ccCCCCEEEEEEchhcCCHH--HHHHHHHHHhcCCcEEEEEeecc
Confidence            4567999999999998742  223333332   2 23358999999999985321  11122222222223345789999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 027949          162 TNLNVEEVFFSIARDIK  178 (216)
Q Consensus       162 ~~~gi~~l~~~l~~~i~  178 (216)
                      .+.|+++++++|.+...
T Consensus        79 ~~~~~~~L~~~l~~~~~   95 (157)
T cd01858          79 NPFGKGSLIQLLRQFSK   95 (157)
T ss_pred             ccccHHHHHHHHHHHHh
Confidence            99999999999977543

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.63  E-value=3.1e-08  Score=73.89  Aligned_cols=121  Identities=20%  Similarity=0.208  Sum_probs=80.8

Q ss_pred             eEEEEEEEeCCCccccccccccccccccEEEEEEeCCCH----------hHHHHHHHHHHHHHHhc-CCCCcEEEEEeCC
Q 027949           62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----------SSFNNIRNWIRNIEQHA-SDNVNKILVGNKA  130 (216)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~  130 (216)
                      ..+.+.+.|.+|+..-+..|..++.+...++|++.++..          ..+++.+.++..+..+. -.+.++++++||.
T Consensus       197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKk  276 (359)
T KOG0085|consen  197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK  276 (359)
T ss_pred             hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechh
Confidence            336777899999988888888888888888887766543          22333333444443321 1478899999999


Q ss_pred             CCCCCC---------------CccChHHHHHHHHHh----C------CeEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 027949          131 DMDESK---------------RAVPTSKGQALADEY----G------IKFFETSAKTNLNVEEVFFSIARDIKQRLA  182 (216)
Q Consensus       131 Dl~~~~---------------~~~~~~~~~~~~~~~----~------~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  182 (216)
                      |+.++.               ...+.+.+++|..+.    +      +--..+.|.+.++|.-+|..+.+.+++..-
T Consensus       277 DlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~L  353 (359)
T KOG0085|consen  277 DLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL  353 (359)
T ss_pred             hhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhh
Confidence            984321               123344555555432    1      223467889999999999999999988643

>cd01856 YlqF YlqF

Probab=98.59  E-value=1.6e-07  Score=68.60  Aligned_cols=56  Identities=23%  Similarity=0.297  Sum_probs=39.4

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   74 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   74 (216)
                      ..++++++|.+|+|||||++++.+..+. ....++.+  .....+..+   ..+.+|||||.
T Consensus       114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T--~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVT--KGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEE--eeeEEEEec---CCEEEEECCCC
Confidence            4479999999999999999999987753 22223333  333334443   35789999995

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01855 YqeH YqeH

Probab=98.59  E-value=8.8e-08  Score=71.19  Aligned_cols=54  Identities=28%  Similarity=0.364  Sum_probs=37.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCC---------CCccccceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSF---------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   74 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   74 (216)
                      .+++++|.+|+|||||+|+|.+...         .....++++  .....+..+.   .+.++||||.
T Consensus       128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT--~~~~~~~~~~---~~~~~DtPG~  190 (190)
T cd01855         128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTT--LDLIKIPLGN---GKKLYDTPGI  190 (190)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCee--eeeEEEecCC---CCEEEeCcCC
Confidence            5799999999999999999998543         222334433  3344444443   4689999993

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.58  E-value=2.4e-07  Score=73.29  Aligned_cols=58  Identities=28%  Similarity=0.338  Sum_probs=42.1

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCcc
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   75 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (216)
                      ...++++|+|.+|+|||||+|+|.+.... ....++.+..  ...+..+.   .+.++||||.-
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtPGi~  177 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKA--QQWIKLGK---GLELLDTPGIL  177 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEE--EEEEEeCC---cEEEEECCCcC
Confidence            34589999999999999999999987653 3344444433  34444443   47799999973

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.56  E-value=2.2e-07  Score=73.10  Aligned_cols=56  Identities=25%  Similarity=0.344  Sum_probs=40.3

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   74 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   74 (216)
                      ..++++|+|.+|+|||||+|+|.+.... ....++.+.  ....+..+.   .+.++||||.
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~--~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTK--GQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeec--ceEEEEeCC---CEEEEECCCc
Confidence            4589999999999999999999987643 333344433  334444443   4689999997

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01859 MJ1464 MJ1464

Probab=98.55  E-value=2.9e-07  Score=66.16  Aligned_cols=57  Identities=21%  Similarity=0.234  Sum_probs=38.4

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   74 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   74 (216)
                      ...+++++|.+|+||||+++++.+.... ...++.+.......+..++   .+.+|||||.
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~~~DtpGi  156 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKITS---KIYLLDTPGV  156 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcCC---CEEEEECcCC
Confidence            3478899999999999999999976533 2223333333333333333   5889999983

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.53  E-value=1e-06  Score=66.99  Aligned_cols=88  Identities=23%  Similarity=0.203  Sum_probs=65.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccc-------ccccccccccc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-------RTITTAYYRGA   88 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~   88 (216)
                      -+|.++|-|.+||||++..+.+.........+++.......+.+++  -++.+.|.||.-+-       ........+.+
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc  137 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC  137 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence            4899999999999999999998765544444555666667777777  67889999995321       12345556778


Q ss_pred             cEEEEEEeCCCHhHHHH
Q 027949           89 MGILLVYDVTDESSFNN  105 (216)
Q Consensus        89 d~~i~v~d~~~~~~~~~  105 (216)
                      +.+++|.|+..|-+...
T Consensus       138 nli~~vld~~kp~~hk~  154 (358)
T KOG1487|consen  138 NLIFIVLDVLKPLSHKK  154 (358)
T ss_pred             cEEEEEeeccCcccHHH
Confidence            99999999887655443

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.52  E-value=5.3e-07  Score=83.71  Aligned_cols=112  Identities=21%  Similarity=0.239  Sum_probs=68.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCCCcc------ccceeeeEEEEEEEECCeEEEEEEEeCCCccc--------ccccccc
Q 027949           18 LLLIGDSGVGKSCLLLRFSDGSFTTSF------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTA   83 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~   83 (216)
                      .+|+|++|+||||+++.- +..++...      ..+.+-+. .....+.+   ..+++|++|..-        ....|..
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~  188 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG  188 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence            589999999999999987 33333211      01111011 11111222   456889999321        1123444


Q ss_pred             cc---------ccccEEEEEEeCCCH-----hH----HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949           84 YY---------RGAMGILLVYDVTDE-----SS----FNNIRNWIRNIEQHASDNVNKILVGNKADMDE  134 (216)
Q Consensus        84 ~~---------~~~d~~i~v~d~~~~-----~~----~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (216)
                      ++         +-.|++|+++|+.+-     +.    ...++..+.++.+...-..|+.||+||+|+..
T Consensus       189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA  257 (1169)
T ss_pred             HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence            33         237999999997652     11    23445567777777777899999999999754

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.52  E-value=2.2e-07  Score=74.49  Aligned_cols=56  Identities=32%  Similarity=0.382  Sum_probs=42.2

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   74 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   74 (216)
                      ..++++|+|.||+||||+||+|.+.... ....|  +.+.....+..+.   .+.++||||.
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P--G~Tk~~q~i~~~~---~i~LlDtPGi  187 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP--GTTKGIQWIKLDD---GIYLLDTPGI  187 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC--ceecceEEEEcCC---CeEEecCCCc
Confidence            4488999999999999999999998763 33334  4445555565655   3788999996

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=2.4e-06  Score=72.85  Aligned_cols=142  Identities=16%  Similarity=0.205  Sum_probs=81.0

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCcccccee-------------------------------------------ee
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIG-------------------------------------------ID   51 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-------------------------------------------~~   51 (216)
                      ..||+|.|..++||||++|+++...+.+....-.+                                           ..
T Consensus       109 ~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~~  188 (749)
T KOG0448|consen  109 HMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLGA  188 (749)
T ss_pred             ccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccCc
Confidence            48999999999999999999988543221110000                                           00


Q ss_pred             EEEEEEEECCe-----EEEEEEEeCCCcc---ccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcE
Q 027949           52 FKIRTIELDGK-----RIKLQIWDTAGQE---RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK  123 (216)
Q Consensus        52 ~~~~~~~~~~~-----~~~~~i~D~~G~~---~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  123 (216)
                      .....+.+...     .-.+.++|.||..   +.......+...+|++|+|.++.+..+..+ +.++......   ...+
T Consensus       189 ~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~~---Kpni  264 (749)
T KOG0448|consen  189 GSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSEE---KPNI  264 (749)
T ss_pred             ceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhcc---CCcE
Confidence            00111222111     1256788999954   344556677788999999999977654333 3344444332   2334


Q ss_pred             EEEEeCCCCCCCCCccChHHHHHHHHHhC--------CeEEEEecC
Q 027949          124 ILVGNKADMDESKRAVPTSKGQALADEYG--------IKFFETSAK  161 (216)
Q Consensus       124 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~  161 (216)
                      +|+-||+|...+ .....+++..-..++.        -.+|++||+
T Consensus       265 FIlnnkwDasas-e~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~  309 (749)
T KOG0448|consen  265 FILNNKWDASAS-EPECKEDVLKQIHELSVVTEKEAADRVFFVSAK  309 (749)
T ss_pred             EEEechhhhhcc-cHHHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence            555688896432 2233334333333332        367888854

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.48  E-value=1.5e-07  Score=67.36  Aligned_cols=59  Identities=25%  Similarity=0.213  Sum_probs=33.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCC------CccccceeeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFT------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR   78 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   78 (216)
                      .++|+|++|||||||+|.|.+....      .....+..+......+...+.   ..++||||...+.
T Consensus        37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~~  101 (161)
T PF03193_consen   37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSFG  101 (161)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT--
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCccc
Confidence            5799999999999999999986321      111222223333444555332   2577999976544

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.47  E-value=7.9e-06  Score=66.54  Aligned_cols=141  Identities=18%  Similarity=0.287  Sum_probs=81.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCC--------------Cccccceee-------eE---EEEEEEE-CCeEEEEEEEe
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFT--------------TSFITTIGI-------DF---KIRTIEL-DGKRIKLQIWD   70 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~--------------~~~~~~~~~-------~~---~~~~~~~-~~~~~~~~i~D   70 (216)
                      +-|.|+|+--+||||||++|...-+.              ....++.+.       .+   ....+.. ++..+++.++|
T Consensus        18 IYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLiD   97 (492)
T PF09547_consen   18 IYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLID   97 (492)
T ss_pred             eEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEEe
Confidence            88999999999999999998662110              001111110       00   1112333 56678999999


Q ss_pred             CCCcc--------c------ccccccc---------------cccc-c-cEEEEEEeCC--C--HhHHHHHHH-HHHHHH
Q 027949           71 TAGQE--------R------FRTITTA---------------YYRG-A-MGILLVYDVT--D--ESSFNNIRN-WIRNIE  114 (216)
Q Consensus        71 ~~G~~--------~------~~~~~~~---------------~~~~-~-d~~i~v~d~~--~--~~~~~~~~~-~~~~~~  114 (216)
                      +.|--        +      ..+-|-.               .+.. + -++++.-|.+  +  ++.+..+.. .+.++.
T Consensus        98 CVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ELk  177 (492)
T PF09547_consen   98 CVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEELK  177 (492)
T ss_pred             ecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHHH
Confidence            98711        0      0111111               1111 1 2344544543  2  334433333 444444


Q ss_pred             HhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCC
Q 027949          115 QHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT  162 (216)
Q Consensus       115 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (216)
                      ..   ++|+++++|-.+   .......+...++..+++++++.+++..
T Consensus       178 ~i---gKPFvillNs~~---P~s~et~~L~~eL~ekY~vpVlpvnc~~  219 (492)
T PF09547_consen  178 EI---GKPFVILLNSTK---PYSEETQELAEELEEKYDVPVLPVNCEQ  219 (492)
T ss_pred             Hh---CCCEEEEEeCCC---CCCHHHHHHHHHHHHHhCCcEEEeehHH
Confidence            43   799999999987   3445566778888899999999988753

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>PRK14974 cell division protein FtsY; Provisional

Probab=98.47  E-value=3.5e-07  Score=73.47  Aligned_cols=101  Identities=13%  Similarity=0.045  Sum_probs=58.9

Q ss_pred             EEEEEEeCCCcccccccc----ccc--cccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027949           64 IKLQIWDTAGQERFRTIT----TAY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR  137 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  137 (216)
                      +.+.|+||+|........    ..+  .-..|..++|+|+.......   .....+....   ..--+|+||.|...   
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~---~~a~~f~~~~---~~~giIlTKlD~~~---  293 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAV---EQAREFNEAV---GIDGVILTKVDADA---  293 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHH---HHHHHHHhcC---CCCEEEEeeecCCC---
Confidence            568999999975432211    111  12467889999986543221   1122222211   23477899999632   


Q ss_pred             ccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Q 027949          138 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI  177 (216)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  177 (216)
                        ..-.+..++...+.|+.+++  +|++++++..+=.+.+
T Consensus       294 --~~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~~~~~~  329 (336)
T PRK14974        294 --KGGAALSIAYVIGKPILFLG--VGQGYDDLIPFDPDWF  329 (336)
T ss_pred             --CccHHHHHHHHHCcCEEEEe--CCCChhhcccCCHHHH
Confidence              22234455556788888886  7899988865433333

>cd01856 YlqF YlqF

Probab=98.47  E-value=1.3e-06  Score=63.89  Aligned_cols=90  Identities=22%  Similarity=0.150  Sum_probs=59.8

Q ss_pred             ccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEe
Q 027949           80 ITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETS  159 (216)
Q Consensus        80 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (216)
                      .....+.++|++++|+|+.++...... .+...+     .+.|+++|+||+|+.+..   ......++....+..++.+|
T Consensus        12 ~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~-----~~k~~ilVlNK~Dl~~~~---~~~~~~~~~~~~~~~vi~iS   82 (171)
T cd01856          12 QIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL-----GNKPRIIVLNKADLADPK---KTKKWLKYFESKGEKVLFVN   82 (171)
T ss_pred             HHHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh-----cCCCEEEEEehhhcCChH---HHHHHHHHHHhcCCeEEEEE
Confidence            345567889999999999876432211 111111     257899999999985321   11112122233345789999


Q ss_pred             cCCCCCHHHHHHHHHHHHH
Q 027949          160 AKTNLNVEEVFFSIARDIK  178 (216)
Q Consensus       160 a~~~~gi~~l~~~l~~~i~  178 (216)
                      |+++.|++++...|...+.
T Consensus        83 a~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          83 AKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             CCCcccHHHHHHHHHHHHH
Confidence            9999999999999988764

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.44  E-value=1.3e-06  Score=68.77  Aligned_cols=144  Identities=17%  Similarity=0.143  Sum_probs=89.4

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcC----------------CCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccc
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDG----------------SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER   76 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   76 (216)
                      ...++|.-+|.-.-|||||..+++.-                +.+.+...+.  ......+.+......+-=.|+||+..
T Consensus        52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGI--TIn~aHveYeTa~RhYaH~DCPGHAD  129 (449)
T KOG0460|consen   52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGI--TINAAHVEYETAKRHYAHTDCPGHAD  129 (449)
T ss_pred             CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccc--eEeeeeeeeeccccccccCCCCchHH
Confidence            45599999999999999999887551                1112223333  34444555544334555679999988


Q ss_pred             cccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccC--hHHHHHHHHHhC--
Q 027949           77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVP--TSKGQALADEYG--  152 (216)
Q Consensus        77 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~--  152 (216)
                      |-.....-..+.|+.|+|+.++|..-- +.++-+-...+..  -..+++++||.|+.++.....  .-+++++..+++  
T Consensus       130 YIKNMItGaaqMDGaILVVaatDG~MP-QTrEHlLLArQVG--V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~  206 (449)
T KOG0460|consen  130 YIKNMITGAAQMDGAILVVAATDGPMP-QTREHLLLARQVG--VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFD  206 (449)
T ss_pred             HHHHhhcCccccCceEEEEEcCCCCCc-chHHHHHHHHHcC--CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCC
Confidence            766555556678999999999985322 2222111222221  244666799999874332222  134666777776  


Q ss_pred             ---CeEEEEecC
Q 027949          153 ---IKFFETSAK  161 (216)
Q Consensus       153 ---~~~~~~Sa~  161 (216)
                         +|++.-||+
T Consensus       207 Gd~~PvI~GSAL  218 (449)
T KOG0460|consen  207 GDNTPVIRGSAL  218 (449)
T ss_pred             CCCCCeeecchh
Confidence               688877764

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.44  E-value=6.4e-07  Score=64.34  Aligned_cols=56  Identities=23%  Similarity=0.289  Sum_probs=38.6

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCC-CCccccceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   74 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   74 (216)
                      ...+++++|.+|+|||||+|.|.+... .....+..+....  .+..+   ..+.++||||.
T Consensus        99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~--~~~~~---~~~~liDtPG~  155 (155)
T cd01849          99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQ--EVKLD---NKIKLLDTPGI  155 (155)
T ss_pred             cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceE--EEEec---CCEEEEECCCC
Confidence            458899999999999999999998653 2233344443333  23333   25788999983

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.43  E-value=4.6e-06  Score=63.18  Aligned_cols=161  Identities=18%  Similarity=0.261  Sum_probs=101.2

Q ss_pred             EEEEEEcCCCC--cHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949           16 IKLLLIGDSGV--GKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        16 ~~i~v~G~~~~--GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..++|+|-+|+  ||.+++.+|...++.........++++.+++.-......+.+.-.+--+++---......-.-++++
T Consensus         5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~vm   84 (418)
T KOG4273|consen    5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFVM   84 (418)
T ss_pred             ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEEE
Confidence            57899999999  9999999999988887777766666766665433322222222111111111111112233567899


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHHhcCCCCcE-EEEEeCCCCCCC-------------------------------------
Q 027949           94 VYDVTDESSFNNIRNWIRNIEQHASDNVNK-ILVGNKADMDES-------------------------------------  135 (216)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~-------------------------------------  135 (216)
                      +||++....+..+..|+..-...   ...+ +.++||.|.++-                                     
T Consensus        85 vfdlse~s~l~alqdwl~htdin---sfdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegss  161 (418)
T KOG4273|consen   85 VFDLSEKSGLDALQDWLPHTDIN---SFDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSS  161 (418)
T ss_pred             EEeccchhhhHHHHhhccccccc---cchhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccccc
Confidence            99999999988888887543222   1223 445899985320                                     


Q ss_pred             ----CC--ccChHHHHHHHHHhCCeEEEEecCC------------CCCHHHHHHHHHHHHHH
Q 027949          136 ----KR--AVPTSKGQALADEYGIKFFETSAKT------------NLNVEEVFFSIARDIKQ  179 (216)
Q Consensus       136 ----~~--~~~~~~~~~~~~~~~~~~~~~Sa~~------------~~gi~~l~~~l~~~i~~  179 (216)
                          +.  ........+++.++++.+++.++..            ..|+..+|.+|..++-.
T Consensus       162 llgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwp  223 (418)
T KOG4273|consen  162 LLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWP  223 (418)
T ss_pred             ccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCc
Confidence                00  0223346677888899999998843            24788888888766544

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.43  E-value=1.9e-06  Score=68.92  Aligned_cols=96  Identities=22%  Similarity=0.166  Sum_probs=57.5

Q ss_pred             EEEEEEeCCCcccccccc----cc-------c-cccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027949           64 IKLQIWDTAGQERFRTIT----TA-------Y-YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKAD  131 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~----~~-------~-~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  131 (216)
                      +.+.|+||+|........    ..       . -...+..++|+|++...  ..+.. ...+...   -.+.-+|+||.|
T Consensus       197 ~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~---~~~~giIlTKlD  270 (318)
T PRK10416        197 IDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEA---VGLTGIILTKLD  270 (318)
T ss_pred             CCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhh---CCCCEEEEECCC
Confidence            688999999975432210    01       1 12356789999998543  22222 1222221   124478899999


Q ss_pred             CCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949          132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS  172 (216)
Q Consensus       132 l~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  172 (216)
                      ...     ..-.+...+...++|+..++  +|++++++-..
T Consensus       271 ~t~-----~~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~~  304 (318)
T PRK10416        271 GTA-----KGGVVFAIADELGIPIKFIG--VGEGIDDLQPF  304 (318)
T ss_pred             CCC-----CccHHHHHHHHHCCCEEEEe--CCCChhhCccC
Confidence            432     12345556677789998887  88888887544

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.41  E-value=6.3e-06  Score=62.87  Aligned_cols=89  Identities=15%  Similarity=0.056  Sum_probs=53.0

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcC--CCCCccc-cceeeeEEEEEEEEC-CeEEEEEEEeCCCccccccc------cc
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDG--SFTTSFI-TTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTI------TT   82 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~--~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~------~~   82 (216)
                      ....-|.|+|++++|||+|+|.|++.  .+..... ...+........... +....+.++||+|.......      ..
T Consensus         5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~   84 (224)
T cd01851           5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL   84 (224)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence            34578999999999999999999998  5542211 111111222222221 12367899999996543221      11


Q ss_pred             ccccc--ccEEEEEEeCCCHh
Q 027949           83 AYYRG--AMGILLVYDVTDES  101 (216)
Q Consensus        83 ~~~~~--~d~~i~v~d~~~~~  101 (216)
                      ..+..  ++++||..+.....
T Consensus        85 ~~l~~llss~~i~n~~~~~~~  105 (224)
T cd01851          85 FALATLLSSVLIYNSWETILG  105 (224)
T ss_pred             HHHHHHHhCEEEEeccCcccH
Confidence            12222  78888888776543

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.38  E-value=1.7e-06  Score=72.79  Aligned_cols=113  Identities=20%  Similarity=0.171  Sum_probs=78.2

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCC------------------CCccccceeeeEEEEEEEECCeEEEEEEEeCCCcc
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSF------------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   75 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (216)
                      ..=+|.+.-.-.+||||+-++++...-                  ..+...+.+.......+.|.+  +.++++||||+-
T Consensus        38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~--~~iNiIDTPGHv  115 (721)
T KOG0465|consen   38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRD--YRINIIDTPGHV  115 (721)
T ss_pred             hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeecc--ceeEEecCCCce
Confidence            344677888889999999998765211                  112223334444444555564  789999999998


Q ss_pred             ccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 027949           76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADM  132 (216)
Q Consensus        76 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  132 (216)
                      .|--.....++-.|++++|+++...-.-.....|.+ +..+   +.|.+.++||.|.
T Consensus       116 DFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ-~~ry---~vP~i~FiNKmDR  168 (721)
T KOG0465|consen  116 DFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQ-MKRY---NVPRICFINKMDR  168 (721)
T ss_pred             eEEEEehhhhhhccCeEEEEEcccceehhhHHHHHH-HHhc---CCCeEEEEehhhh
Confidence            888888888899999999999876543333333433 3333   7899999999996

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.38  E-value=4.1e-06  Score=69.23  Aligned_cols=86  Identities=10%  Similarity=0.010  Sum_probs=47.7

Q ss_pred             EEEEEEEeCCCcccccccccc----c--cccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027949           63 RIKLQIWDTAGQERFRTITTA----Y--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK  136 (216)
Q Consensus        63 ~~~~~i~D~~G~~~~~~~~~~----~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  136 (216)
                      .+.+.|+||+|..........    +  ....+-+++|+|+.-.....   .....+.+.   -.+--+|+||.|...  
T Consensus       182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~---~~a~~F~~~---~~~~g~IlTKlD~~a--  253 (429)
T TIGR01425       182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAE---AQAKAFKDS---VDVGSVIITKLDGHA--  253 (429)
T ss_pred             CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHH---HHHHHHHhc---cCCcEEEEECccCCC--
Confidence            368899999996543321111    1  12457789999987543222   222333322   235578899999532  


Q ss_pred             CccChHHHHHHHHHhCCeEEEEe
Q 027949          137 RAVPTSKGQALADEYGIKFFETS  159 (216)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~S  159 (216)
                         ..-.+.......+.|+.+++
T Consensus       254 ---rgG~aLs~~~~t~~PI~fig  273 (429)
T TIGR01425       254 ---KGGGALSAVAATKSPIIFIG  273 (429)
T ss_pred             ---CccHHhhhHHHHCCCeEEEc
Confidence               12234445556666666553

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.36  E-value=9.6e-07  Score=71.46  Aligned_cols=58  Identities=21%  Similarity=0.241  Sum_probs=36.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCCC-ccc-----cceeeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 027949           18 LLLIGDSGVGKSCLLLRFSDGSFTT-SFI-----TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR   78 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   78 (216)
                      ++|+|.+|+|||||+|+|++..... ...     .+..++.....+.+.+.   ..++||||..++.
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~  271 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG  271 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence            6899999999999999999765321 111     11112233333444322   2478999986655

>PRK01889 GTPase RsgA; Reviewed

Probab=98.35  E-value=2.6e-06  Score=69.38  Aligned_cols=84  Identities=14%  Similarity=0.193  Sum_probs=58.0

Q ss_pred             cccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCC
Q 027949           85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL  164 (216)
Q Consensus        85 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (216)
                      ..++|.+++|+++..+-....+..++..+...   +.+.+||+||+||.+.. ....+....+  ..+.+++.+|++++.
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~-~~~~~~~~~~--~~g~~Vi~vSa~~g~  183 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDA-EEKIAEVEAL--APGVPVLAVSALDGE  183 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCH-HHHHHHHHHh--CCCCcEEEEECCCCc
Confidence            57899999999996443444555665555443   67889999999996421 1011222222  346799999999999


Q ss_pred             CHHHHHHHHH
Q 027949          165 NVEEVFFSIA  174 (216)
Q Consensus       165 gi~~l~~~l~  174 (216)
                      |+++|..+|.
T Consensus       184 gl~~L~~~L~  193 (356)
T PRK01889        184 GLDVLAAWLS  193 (356)
T ss_pred             cHHHHHHHhh
Confidence            9999988874

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.35  E-value=2.5e-06  Score=61.49  Aligned_cols=21  Identities=33%  Similarity=0.400  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027949           18 LLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~   38 (216)
                      ++++|..|+|||||++.++..
T Consensus         3 ~~l~G~~GsGKTtl~~~l~~~   23 (158)
T cd03112           3 TVLTGFLGAGKTTLLNHILTE   23 (158)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            579999999999999998865

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.35  E-value=1.6e-06  Score=61.28  Aligned_cols=75  Identities=16%  Similarity=0.173  Sum_probs=50.4

Q ss_pred             cccccccEEEEEEeCCCHhHHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEec
Q 027949           83 AYYRGAMGILLVYDVTDESSFN--NIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSA  160 (216)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (216)
                      ..+..+|++++|+|+.++.+..  .+..++...   . .+.|+++|+||+|+.+..   .......+....+..++++||
T Consensus         7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~-~~k~~iivlNK~DL~~~~---~~~~~~~~~~~~~~~ii~iSa   79 (141)
T cd01857           7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D-PRKKNILLLNKADLLTEE---QRKAWAEYFKKEGIVVVFFSA   79 (141)
T ss_pred             HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c-CCCcEEEEEechhcCCHH---HHHHHHHHHHhcCCeEEEEEe
Confidence            3457899999999998876533  333333322   1 368999999999985321   122344455556678999999


Q ss_pred             CCCC
Q 027949          161 KTNL  164 (216)
Q Consensus       161 ~~~~  164 (216)
                      .++.
T Consensus        80 ~~~~   83 (141)
T cd01857          80 LKEN   83 (141)
T ss_pred             cCCC
Confidence            8775

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.34  E-value=5.4e-06  Score=65.01  Aligned_cols=99  Identities=16%  Similarity=0.074  Sum_probs=59.0

Q ss_pred             EEEEEEeCCCcccccccccc------------ccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027949           64 IKLQIWDTAGQERFRTITTA------------YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKAD  131 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~------------~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  131 (216)
                      +.+.|+||+|....+.....            .-...|..++|+|++...  ..+. ....+.+..   .+.-+|+||.|
T Consensus       155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~-~~~~f~~~~---~~~g~IlTKlD  228 (272)
T TIGR00064       155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALE-QAKVFNEAV---GLTGIILTKLD  228 (272)
T ss_pred             CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHH-HHHHHHhhC---CCCEEEEEccC
Confidence            68899999997543322111            112378899999997542  2222 222222222   24578899999


Q ss_pred             CCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q 027949          132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR  175 (216)
Q Consensus       132 l~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  175 (216)
                      ...     ..-.+..+....+.|+.+++  +|++++++-.+=.+
T Consensus       229 e~~-----~~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~~~~~  265 (272)
T TIGR00064       229 GTA-----KGGIILSIAYELKLPIKFIG--VGEKIDDLAPFDAD  265 (272)
T ss_pred             CCC-----CccHHHHHHHHHCcCEEEEe--CCCChHhCccCCHH
Confidence            532     22345555667788888887  78888887544333

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.33  E-value=3.2e-05  Score=54.90  Aligned_cols=147  Identities=20%  Similarity=0.261  Sum_probs=77.3

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCC-Ccc--------------ccc
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTA-GQE--------------RFR   78 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~-G~~--------------~~~   78 (216)
                      ..++|.|.|+||+||||++.++.+.--...+. .  -.+....+.-++..+=|.+.|+. |..              .|.
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~k-v--gGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~   80 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYK-V--GGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG   80 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcCce-e--eeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence            45899999999999999999987532111111 1  12334444556666666666765 311              111


Q ss_pred             cc-----------cccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHH
Q 027949           79 TI-----------TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQAL  147 (216)
Q Consensus        79 ~~-----------~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~  147 (216)
                      -.           ....+..+|++  ++|--.|..+. ...+...+......+.|++.++.+.+-.        ..+..+
T Consensus        81 V~v~~le~i~~~al~rA~~~aDvI--IIDEIGpMElk-s~~f~~~ve~vl~~~kpliatlHrrsr~--------P~v~~i  149 (179)
T COG1618          81 VNVEGLEEIAIPALRRALEEADVI--IIDEIGPMELK-SKKFREAVEEVLKSGKPLIATLHRRSRH--------PLVQRI  149 (179)
T ss_pred             eeHHHHHHHhHHHHHHHhhcCCEE--EEecccchhhc-cHHHHHHHHHHhcCCCcEEEEEecccCC--------hHHHHh
Confidence            10           11122335543  44554443322 1234444555555578888877766521        122222


Q ss_pred             HHHhCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 027949          148 ADEYGIKFFETSAKTNLNVEEVFFSIARDIK  178 (216)
Q Consensus       148 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  178 (216)
                       +..+.-++.   .+.+|-+.+++.|...+.
T Consensus       150 -k~~~~v~v~---lt~~NR~~i~~~Il~~L~  176 (179)
T COG1618         150 -KKLGGVYVF---LTPENRNRILNEILSVLK  176 (179)
T ss_pred             -hhcCCEEEE---EccchhhHHHHHHHHHhc
Confidence             233333332   566676777777776553

>PRK13796 GTPase YqeH; Provisional

Probab=98.31  E-value=5.4e-06  Score=67.81  Aligned_cols=83  Identities=27%  Similarity=0.368  Sum_probs=56.1

Q ss_pred             cccc-EEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHH----HHHHHHhCC---eEEE
Q 027949           86 RGAM-GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKG----QALADEYGI---KFFE  157 (216)
Q Consensus        86 ~~~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~----~~~~~~~~~---~~~~  157 (216)
                      ...+ .+++|+|+.+..     ..|...+.+... +.|+++|+||+|+.+.  ....+.+    ..++...++   .++.
T Consensus        67 ~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~~--~~~~~~i~~~l~~~~k~~g~~~~~v~~  138 (365)
T PRK13796         67 GDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLPK--SVKKNKVKNWLRQEAKELGLRPVDVVL  138 (365)
T ss_pred             cccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCCC--ccCHHHHHHHHHHHHHhcCCCcCcEEE
Confidence            4444 899999998754     123333433332 6799999999998542  2222233    334555565   6899


Q ss_pred             EecCCCCCHHHHHHHHHHH
Q 027949          158 TSAKTNLNVEEVFFSIARD  176 (216)
Q Consensus       158 ~Sa~~~~gi~~l~~~l~~~  176 (216)
                      +||+++.|++++++.|.+.
T Consensus       139 vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        139 ISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             EECCCCCCHHHHHHHHHHh
Confidence            9999999999999998654

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.29  E-value=1.3e-07  Score=76.12  Aligned_cols=114  Identities=18%  Similarity=0.181  Sum_probs=86.4

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcC--------CCC----------CccccceeeeEEEEEEEECCeEEEEEEEeCCCccc
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDG--------SFT----------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER   76 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~--------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   76 (216)
                      .-+|.|+..-.+||||...+++.-        .++          .+...+.+.......+.|.|  +.+.++||||+-.
T Consensus        37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg--~rinlidtpghvd  114 (753)
T KOG0464|consen   37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKG--HRINLIDTPGHVD  114 (753)
T ss_pred             hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeeccccc--ceEeeecCCCcce
Confidence            357889999999999999998651        111          23334555666666777777  7888999999999


Q ss_pred             cccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949           77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE  134 (216)
Q Consensus        77 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (216)
                      |+-....+++-.|+++.|||++..-....+-.|.+    ....++|-..++||+|...
T Consensus       115 f~leverclrvldgavav~dasagve~qtltvwrq----adk~~ip~~~finkmdk~~  168 (753)
T KOG0464|consen  115 FRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ----ADKFKIPAHCFINKMDKLA  168 (753)
T ss_pred             EEEEHHHHHHHhcCeEEEEeccCCcccceeeeehh----ccccCCchhhhhhhhhhhh
Confidence            99989999999999999999987655555555543    2234789999999999643

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.29  E-value=1.7e-06  Score=66.91  Aligned_cols=58  Identities=24%  Similarity=0.272  Sum_probs=36.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCC------ccccceeeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTT------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR   78 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   78 (216)
                      .++|+|.+|+|||||+|+|.+.....      ....+..++.....+...+    ..++||||...+.
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~~~  185 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNEFG  185 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCccccC
Confidence            67999999999999999999864321      1111111222333344433    2588999985544

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.29  E-value=5.1e-06  Score=65.42  Aligned_cols=92  Identities=22%  Similarity=0.164  Sum_probs=61.3

Q ss_pred             cccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEec
Q 027949           81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSA  160 (216)
Q Consensus        81 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (216)
                      ....+..+|++++|+|+.++.+.... .+...+     .+.|+++|+||+|+.+..  . ......+....+..++.+||
T Consensus        15 ~~~~l~~aDvVl~V~Dar~p~~~~~~-~i~~~l-----~~kp~IiVlNK~DL~~~~--~-~~~~~~~~~~~~~~vi~iSa   85 (276)
T TIGR03596        15 IKEKLKLVDVVIEVLDARIPLSSRNP-MIDEIR-----GNKPRLIVLNKADLADPA--V-TKQWLKYFEEKGIKALAINA   85 (276)
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCCCCh-hHHHHH-----CCCCEEEEEEccccCCHH--H-HHHHHHHHHHcCCeEEEEEC
Confidence            45566789999999999876442221 111111     157999999999985321  0 11112222334568899999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHh
Q 027949          161 KTNLNVEEVFFSIARDIKQRL  181 (216)
Q Consensus       161 ~~~~gi~~l~~~l~~~i~~~~  181 (216)
                      +++.|++++.+.|.+.+.+..
T Consensus        86 ~~~~gi~~L~~~i~~~~~~~~  106 (276)
T TIGR03596        86 KKGKGVKKIIKAAKKLLKEKN  106 (276)
T ss_pred             CCcccHHHHHHHHHHHHHHhh
Confidence            999999999999988876543

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.26  E-value=7.7e-06  Score=65.47  Aligned_cols=151  Identities=17%  Similarity=0.160  Sum_probs=80.0

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCC------------------CccccceeeeEEEE------------------EE
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFT------------------TSFITTIGIDFKIR------------------TI   57 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~------------------~~~~~~~~~~~~~~------------------~~   57 (216)
                      ..++|+|+|+..+|||||+-.|...+.+                  ....+..+.+..-.                  .+
T Consensus       132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv  211 (641)
T KOG0463|consen  132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV  211 (641)
T ss_pred             eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence            4589999999999999999777653321                  11111112111100                  01


Q ss_pred             EE-CCeEEEEEEEeCCCccccccccccc--cccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949           58 EL-DGKRIKLQIWDTAGQERFRTITTAY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE  134 (216)
Q Consensus        58 ~~-~~~~~~~~i~D~~G~~~~~~~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (216)
                      .+ .+...-++++|..|++.|-...-.-  -+--|.-.+++-++-.--... ++   .+.-......|+++|.+|+|+.+
T Consensus       212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmT-KE---HLgLALaL~VPVfvVVTKIDMCP  287 (641)
T KOG0463|consen  212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMT-KE---HLGLALALHVPVFVVVTKIDMCP  287 (641)
T ss_pred             eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceecc-HH---hhhhhhhhcCcEEEEEEeeccCc
Confidence            11 1222457788999998876532211  122355555555443211000 01   01111122689999999999865


Q ss_pred             CCCccChHHHH---HHH--------------------------HHhCCeEEEEecCCCCCHHHHH
Q 027949          135 SKRAVPTSKGQ---ALA--------------------------DEYGIKFFETSAKTNLNVEEVF  170 (216)
Q Consensus       135 ~~~~~~~~~~~---~~~--------------------------~~~~~~~~~~Sa~~~~gi~~l~  170 (216)
                      +.  +..+..+   .+.                          .+.-+++|.+|-.+|++++-+.
T Consensus       288 AN--iLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLk  350 (641)
T KOG0463|consen  288 AN--ILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLK  350 (641)
T ss_pred             HH--HHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHH
Confidence            32  1222221   111                          1222789999999999987543

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.25  E-value=4.2e-06  Score=72.08  Aligned_cols=114  Identities=20%  Similarity=0.210  Sum_probs=76.0

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCC----------------CccccceeeeEEEEEEEECCeEEEEEEEeCCCcc
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFT----------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   75 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (216)
                      .+..=+|+++..-.-|||||...|...+-.                .+...+.++..  ..+..-...+.++++|+||+-
T Consensus         6 ~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmks--s~is~~~~~~~~nlidspghv   83 (887)
T KOG0467|consen    6 SEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKS--SAISLLHKDYLINLIDSPGHV   83 (887)
T ss_pred             CCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeec--cccccccCceEEEEecCCCcc
Confidence            445568999999999999999998764321                11122222222  222222233788999999999


Q ss_pred             ccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027949           76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKAD  131 (216)
Q Consensus        76 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  131 (216)
                      .|.+......+-+|++++++|+...-.-....-    +++....+...++|+||+|
T Consensus        84 df~sevssas~l~d~alvlvdvvegv~~qt~~v----lrq~~~~~~~~~lvinkid  135 (887)
T KOG0467|consen   84 DFSSEVSSASRLSDGALVLVDVVEGVCSQTYAV----LRQAWIEGLKPILVINKID  135 (887)
T ss_pred             chhhhhhhhhhhcCCcEEEEeeccccchhHHHH----HHHHHHccCceEEEEehhh
Confidence            999888888888999999999876533222211    1211122567789999999

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.23  E-value=2e-06  Score=67.28  Aligned_cols=60  Identities=25%  Similarity=0.279  Sum_probs=40.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC------CCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS------FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT   79 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   79 (216)
                      ..+++|.+|+|||||+|+|....      +......+..++.....+.+.+..   .|+||||..++.-
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~l  231 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLGL  231 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccCc
Confidence            46899999999999999998732      223333444445556666664322   4679999866543

>PRK12289 GTPase RsgA; Reviewed

Probab=98.23  E-value=2.3e-06  Score=69.30  Aligned_cols=56  Identities=25%  Similarity=0.281  Sum_probs=35.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCCC-ccccc-----eeeeEEEEEEEECCeEEEEEEEeCCCccc
Q 027949           18 LLLIGDSGVGKSCLLLRFSDGSFTT-SFITT-----IGIDFKIRTIELDGKRIKLQIWDTAGQER   76 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   76 (216)
                      ++|+|++|+|||||||.|++..... ...+.     ..++.....+...+..   .++||||...
T Consensus       175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~  236 (352)
T PRK12289        175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQ  236 (352)
T ss_pred             EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCccc
Confidence            7999999999999999999754321 11111     1122333444443322   5789999854

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=98.23  E-value=5.3e-06  Score=66.79  Aligned_cols=158  Identities=16%  Similarity=0.081  Sum_probs=93.8

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCC-------------------------------CCCccccceeeeEEEEEEEEC
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGS-------------------------------FTTSFITTIGIDFKIRTIELD   60 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~   60 (216)
                      +...++++|+|.-.+||||+-..|+...                               ...+...+.+.+.....++..
T Consensus        76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte  155 (501)
T KOG0459|consen   76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE  155 (501)
T ss_pred             CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence            3556999999999999999877664400                               011122222222333333333


Q ss_pred             CeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHh---HHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027949           61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SFNNIRN-WIRNIEQHASDNVNKILVGNKADMDESK  136 (216)
Q Consensus        61 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  136 (216)
                        ...+++.|+||+..|-...-.-..++|+.++|+++-..+   .|+.--+ .-+.+......-...++++||+|-+...
T Consensus       156 --~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvn  233 (501)
T KOG0459|consen  156 --NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVN  233 (501)
T ss_pred             --ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccC
Confidence              367889999999887776666667889999998874322   1211101 1111112222245678889999954322


Q ss_pred             Cc-----cChHHHHHHHHHhC------CeEEEEecCCCCCHHHHHH
Q 027949          137 RA-----VPTSKGQALADEYG------IKFFETSAKTNLNVEEVFF  171 (216)
Q Consensus       137 ~~-----~~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~  171 (216)
                      ..     ...+....|.+.+|      ..++++|..+|.++.+...
T Consensus       234 Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  234 WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             cchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence            11     11233444555443      5789999999999887654

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.23  E-value=2.8e-06  Score=69.31  Aligned_cols=56  Identities=27%  Similarity=0.362  Sum_probs=38.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCC------CCccccceeeeEEEEEEEECCeEEEEEEEeCCCccc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSF------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER   76 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   76 (216)
                      .+++|+|.+|+|||||+|+|++...      .....|+++  .....+..++   .+.++||||...
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT--~~~~~~~~~~---~~~l~DtPG~~~  216 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTT--LDLIEIPLDD---GHSLYDTPGIIN  216 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeE--eeEEEEEeCC---CCEEEECCCCCC
Confidence            4899999999999999999998542      223334444  3334444433   246899999653

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.21  E-value=1.4e-05  Score=62.64  Aligned_cols=93  Identities=17%  Similarity=0.169  Sum_probs=66.7

Q ss_pred             cccccccccccEEEEEEeCCCHh-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEE
Q 027949           79 TITTAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFE  157 (216)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  157 (216)
                      .+.+.-+.+.|-+++|+++.+|+ +...+..++-.....   ++..+||+||+||.+...... ++........+.+++.
T Consensus        71 ~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~---gi~pvIvlnK~DL~~~~~~~~-~~~~~~y~~~gy~v~~  146 (301)
T COG1162          71 VLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG---GIEPVIVLNKIDLLDDEEAAV-KELLREYEDIGYPVLF  146 (301)
T ss_pred             ceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc---CCcEEEEEEccccCcchHHHH-HHHHHHHHhCCeeEEE
Confidence            34444555688899999998887 344455555444433   677888899999976433222 4566677788999999


Q ss_pred             EecCCCCCHHHHHHHHHH
Q 027949          158 TSAKTNLNVEEVFFSIAR  175 (216)
Q Consensus       158 ~Sa~~~~gi~~l~~~l~~  175 (216)
                      +|++++.|++++..++..
T Consensus       147 ~s~~~~~~~~~l~~~l~~  164 (301)
T COG1162         147 VSAKNGDGLEELAELLAG  164 (301)
T ss_pred             ecCcCcccHHHHHHHhcC
Confidence            999999999998887653

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.20  E-value=8.5e-06  Score=64.52  Aligned_cols=91  Identities=23%  Similarity=0.246  Sum_probs=61.3

Q ss_pred             cccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEec
Q 027949           81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSA  160 (216)
Q Consensus        81 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (216)
                      ....+..+|++++|+|+.++.+...  .++..+.   . +.|+++|+||+|+.+.  . ..+....+....+..++.+||
T Consensus        18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~---~-~kp~iiVlNK~DL~~~--~-~~~~~~~~~~~~~~~vi~vSa   88 (287)
T PRK09563         18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKII---G-NKPRLLILNKSDLADP--E-VTKKWIEYFEEQGIKALAINA   88 (287)
T ss_pred             HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh---C-CCCEEEEEEchhcCCH--H-HHHHHHHHHHHcCCeEEEEEC
Confidence            4556678999999999977644221  1111111   1 5899999999998532  1 112222223344678899999


Q ss_pred             CCCCCHHHHHHHHHHHHHHH
Q 027949          161 KTNLNVEEVFFSIARDIKQR  180 (216)
Q Consensus       161 ~~~~gi~~l~~~l~~~i~~~  180 (216)
                      .++.|++++.+.|.+.+.+.
T Consensus        89 ~~~~gi~~L~~~l~~~l~~~  108 (287)
T PRK09563         89 KKGQGVKKILKAAKKLLKEK  108 (287)
T ss_pred             CCcccHHHHHHHHHHHHHHH
Confidence            99999999999988877654

>PRK13796 GTPase YqeH; Provisional

Probab=98.20  E-value=2.5e-06  Score=69.71  Aligned_cols=55  Identities=29%  Similarity=0.315  Sum_probs=36.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCC------CCccccceeeeEEEEEEEECCeEEEEEEEeCCCcc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSF------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   75 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (216)
                      .+++|+|.+|||||||+|+|+....      .....|+++  .....+..++.   ..++||||..
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT--~~~~~~~l~~~---~~l~DTPGi~  221 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTT--LDKIEIPLDDG---SFLYDTPGII  221 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCcc--ceeEEEEcCCC---cEEEECCCcc
Confidence            4789999999999999999986431      122334444  33444444442   3689999974

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.20  E-value=1e-06  Score=68.50  Aligned_cols=180  Identities=19%  Similarity=0.196  Sum_probs=102.8

Q ss_pred             CCCceEEEEEEcCCCCcHHHHHHHHHcCC---CCCccccceeee--EEEEEEEE--------------------------
Q 027949           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGS---FTTSFITTIGID--FKIRTIEL--------------------------   59 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~---~~~~~~~~~~~~--~~~~~~~~--------------------------   59 (216)
                      .+.-.++|.-+|...-||||+++++.+-.   |..+.....+..  +....++.                          
T Consensus        34 sRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~  113 (466)
T KOG0466|consen   34 SRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCD  113 (466)
T ss_pred             hheeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcc
Confidence            34566999999999999999999987721   111111111100  00000000                          


Q ss_pred             ----CC---eEEEEEEEeCCCccccccccccccccccEEEEEEeCCC----HhHHHHHHHHHHHHHHhcCCCCcEEEEEe
Q 027949           60 ----DG---KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----ESSFNNIRNWIRNIEQHASDNVNKILVGN  128 (216)
Q Consensus        60 ----~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~~~~~~~~~~~~~~~~~~~~~p~ivv~n  128 (216)
                          .+   --..+.++|.||++-.-....+-..-.|++++++..+.    |++-+++.    .+.-..  -..++++-|
T Consensus       114 ~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLa----aveiM~--LkhiiilQN  187 (466)
T KOG0466|consen  114 RPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLA----AVEIMK--LKHIIILQN  187 (466)
T ss_pred             cCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHH----HHHHhh--hceEEEEec
Confidence                00   01356788999987533322222334577888877765    33333332    221111  246788899


Q ss_pred             CCCCCCCCCccC-hHHHHHHHHH---hCCeEEEEecCCCCCHHHHHHHHHHHHHHHhhcccCCCCCccccccCC
Q 027949          129 KADMDESKRAVP-TSKGQALADE---YGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIKINQP  198 (216)
Q Consensus       129 K~Dl~~~~~~~~-~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~  198 (216)
                      |+||..+..+.. .+.+..|...   .+.+++++||.-.++++-+.++|+..+.---.+..  .+|....|.+-
T Consensus       188 KiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf~--s~prlIVIRSF  259 (466)
T KOG0466|consen  188 KIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDFT--SPPRLIVIRSF  259 (466)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCccccC--CCCcEEEEEee
Confidence            999865443333 2445555543   34799999999999999999999988764333222  33444444433

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.18  E-value=2.2e-05  Score=65.96  Aligned_cols=137  Identities=15%  Similarity=0.154  Sum_probs=76.8

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ...+-++|+|+||+||||||+.|...-.-......    ....++ ..+....++++++|..  ... .....+-+|.++
T Consensus        67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i----~GPiTv-vsgK~RRiTflEcp~D--l~~-miDvaKIaDLVl  138 (1077)
T COG5192          67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEI----RGPITV-VSGKTRRITFLECPSD--LHQ-MIDVAKIADLVL  138 (1077)
T ss_pred             CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhcc----CCceEE-eecceeEEEEEeChHH--HHH-HHhHHHhhheeE
Confidence            34577899999999999999888653211100000    111111 2455578888999843  222 223345689999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcE-EEEEeCCCCCCCCCccChHHHH----HHHHH--hCCeEEEEecCC
Q 027949           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNK-ILVGNKADMDESKRAVPTSKGQ----ALADE--YGIKFFETSAKT  162 (216)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~~~~~~~~~~----~~~~~--~~~~~~~~Sa~~  162 (216)
                      +++|.+-.-.++.+ .++..+..   ++.|- +-|+++.|+..... .....-+    .|..+  .|+.+|.+|...
T Consensus       139 LlIdgnfGfEMETm-EFLnil~~---HGmPrvlgV~ThlDlfk~~s-tLr~~KKrlkhRfWtEiyqGaKlFylsgV~  210 (1077)
T COG5192         139 LLIDGNFGFEMETM-EFLNILIS---HGMPRVLGVVTHLDLFKNPS-TLRSIKKRLKHRFWTEIYQGAKLFYLSGVE  210 (1077)
T ss_pred             EEeccccCceehHH-HHHHHHhh---cCCCceEEEEeecccccChH-HHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence            99998765333332 23333333   35555 44789999864221 1111111    22222  257888888764

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.16  E-value=7.9e-06  Score=74.67  Aligned_cols=116  Identities=22%  Similarity=0.233  Sum_probs=65.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEE-EEEEEECCeEEEEEEEeCCCccc--------cccccccc----
Q 027949           18 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFK-IRTIELDGKRIKLQIWDTAGQER--------FRTITTAY----   84 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~----   84 (216)
                      -+|+|++|+||||++..--.+-.........+.... +...++- -.-..+++||.|...        -...|..+    
T Consensus       128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdww-f~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lL  206 (1188)
T COG3523         128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWW-FTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLL  206 (1188)
T ss_pred             eEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCcc-cccceEEEcCCcceecccCcchhhHHHHHHHHHHH
Confidence            489999999999988654322111110000000000 1111110 012456789998321        12233333    


Q ss_pred             -----cccccEEEEEEeCCCH-----hH----HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949           85 -----YRGAMGILLVYDVTDE-----SS----FNNIRNWIRNIEQHASDNVNKILVGNKADMDE  134 (216)
Q Consensus        85 -----~~~~d~~i~v~d~~~~-----~~----~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (216)
                           .+-.|++|+.+|+.+-     ..    ...++..+.++.+...-..|++|++||.|+.+
T Consensus       207 kk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         207 KKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP  270 (1188)
T ss_pred             HHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence                 2457999999998652     11    22344456777777777899999999999854

>PRK13695 putative NTPase; Provisional

Probab=98.15  E-value=5.5e-05  Score=55.36  Aligned_cols=49  Identities=16%  Similarity=0.168  Sum_probs=31.2

Q ss_pred             CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Q 027949          118 SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI  177 (216)
Q Consensus       118 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  177 (216)
                      ..+.|++++.+|...        ......+....+..++.+   +.++-+++.+.+++.+
T Consensus       124 ~~~~~~i~v~h~~~~--------~~~~~~i~~~~~~~i~~~---~~~~r~~~~~~~~~~~  172 (174)
T PRK13695        124 DSEKPVIATLHRRSV--------HPFVQEIKSRPGGRVYEL---TPENRDSLPFEILNRL  172 (174)
T ss_pred             hCCCeEEEEECchhh--------HHHHHHHhccCCcEEEEE---cchhhhhHHHHHHHHH
Confidence            346899999988542        123334455556677776   4566678888877754

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.12  E-value=7e-05  Score=62.84  Aligned_cols=157  Identities=17%  Similarity=0.248  Sum_probs=87.5

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCC-------------------------------------------------
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTT-------------------------------------------------   42 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~-------------------------------------------------   42 (216)
                      .+...+|+|+|...+||||.+..+......+                                                 
T Consensus       305 ~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E  384 (980)
T KOG0447|consen  305 QDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIE  384 (980)
T ss_pred             cccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHH
Confidence            4567899999999999999999886632110                                                 


Q ss_pred             -----ccccceeeeEEEEEEEECCeE-EEEEEEeCCCccc-------------cccccccccccccEEEEEEeCCCHhHH
Q 027949           43 -----SFITTIGIDFKIRTIELDGKR-IKLQIWDTAGQER-------------FRTITTAYYRGAMGILLVYDVTDESSF  103 (216)
Q Consensus        43 -----~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~~~  103 (216)
                           ....+.+....+..+++.|.. -..+++|.||.-.             .-.+...+..+-+++|+|+--..-+..
T Consensus       385 ~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAE  464 (980)
T KOG0447|consen  385 LRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAE  464 (980)
T ss_pred             HHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchh
Confidence                 000011111222222333322 3567889999321             122445667788899998743222211


Q ss_pred             -HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-----CeEEEEecCCC---CCHHHHHHH
Q 027949          104 -NNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG-----IKFFETSAKTN---LNVEEVFFS  172 (216)
Q Consensus       104 -~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~---~gi~~l~~~  172 (216)
                       ..+-.+   +.+.-+.+...|+|++|.|+.+ ....++..++.+....-     ..||.+-.-.|   ++|+++-.+
T Consensus       465 RSnVTDL---Vsq~DP~GrRTIfVLTKVDlAE-knlA~PdRI~kIleGKLFPMKALGYfaVVTGrGnssdSIdaIR~Y  538 (980)
T KOG0447|consen  465 RSIVTDL---VSQMDPHGRRTIFVLTKVDLAE-KNVASPSRIQQIIEGKLFPMKALGYFAVVTGKGNSSESIEAIREY  538 (980)
T ss_pred             hhhHHHH---HHhcCCCCCeeEEEEeecchhh-hccCCHHHHHHHHhcCccchhhcceeEEEecCCCcchhHHHHHHH
Confidence             122222   3334456888999999999965 34556666666554211     35665533222   345555444

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.09  E-value=3.5e-05  Score=63.78  Aligned_cols=143  Identities=15%  Similarity=0.174  Sum_probs=74.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCC---ccccceeee------------------EEEEEEEE---------CCeEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTT---SFITTIGID------------------FKIRTIEL---------DGKRIK   65 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~---~~~~~~~~~------------------~~~~~~~~---------~~~~~~   65 (216)
                      -.|+|+|++|+||||++..|.+.....   ........+                  ........         .-....
T Consensus       192 ~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~d  271 (420)
T PRK14721        192 GVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGKH  271 (420)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCCC
Confidence            478999999999999999886531100   000000000                  00000000         001246


Q ss_pred             EEEEeCCCccccccc----ccccc--ccccEEEEEEeCCC-HhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc
Q 027949           66 LQIWDTAGQERFRTI----TTAYY--RGAMGILLVYDVTD-ESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA  138 (216)
Q Consensus        66 ~~i~D~~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  138 (216)
                      +.++||+|.......    ...+.  ...+-.++|+|++. ...+.++   +..+..    -..--+|+||.|-..    
T Consensus       272 ~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~---~~~f~~----~~~~~~I~TKlDEt~----  340 (420)
T PRK14721        272 MVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEV---ISAYQG----HGIHGCIITKVDEAA----  340 (420)
T ss_pred             EEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHH---HHHhcC----CCCCEEEEEeeeCCC----
Confidence            788999996542221    11111  12335678888874 4333333   222221    123367789999432    


Q ss_pred             cChHHHHHHHHHhCCeEEEEecCCCCCH-HHHHHH
Q 027949          139 VPTSKGQALADEYGIKFFETSAKTNLNV-EEVFFS  172 (216)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi-~~l~~~  172 (216)
                       ..-.+..++...+.++..+  .+|.++ +++...
T Consensus       341 -~~G~~l~~~~~~~lPi~yv--t~Gq~VP~Dl~~a  372 (420)
T PRK14721        341 -SLGIALDAVIRRKLVLHYV--TNGQKVPEDLHEA  372 (420)
T ss_pred             -CccHHHHHHHHhCCCEEEE--ECCCCchhhhhhC
Confidence             3345666777778777766  456666 555443

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.05  E-value=1.1e-05  Score=63.95  Aligned_cols=60  Identities=27%  Similarity=0.243  Sum_probs=37.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCcc-c-----cceeeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSF-I-----TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR   78 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   78 (216)
                      -.++++|++|+|||||+|.|++....... .     .+..+......+...+.   ..++||||..++.
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~  227 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG  227 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence            46899999999999999999986543211 1     11112223333444321   2578999986543

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=98.02  E-value=0.00016  Score=58.00  Aligned_cols=88  Identities=17%  Similarity=0.120  Sum_probs=48.8

Q ss_pred             EEEEEEeCCCcccccc----c-ccccc---ccccEEEEEEeCCCHhHHHH-HHH-HHHHHHHhcCCCCcEEEEEeCCCCC
Q 027949           64 IKLQIWDTAGQERFRT----I-TTAYY---RGAMGILLVYDVTDESSFNN-IRN-WIRNIEQHASDNVNKILVGNKADMD  133 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~----~-~~~~~---~~~d~~i~v~d~~~~~~~~~-~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~  133 (216)
                      ....++++.|...-..    + +...+   -..|+++-|+|+.+-..... ... ...++.      ..=+||+||.|+.
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia------~AD~ivlNK~Dlv  158 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA------FADVIVLNKTDLV  158 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH------hCcEEEEecccCC
Confidence            4556778877432211    1 11111   23688999999876543222 222 222221      1228999999997


Q ss_pred             CCCCccChHHHHHHHHHhC--CeEEEEec
Q 027949          134 ESKRAVPTSKGQALADEYG--IKFFETSA  160 (216)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~--~~~~~~Sa  160 (216)
                      ++.   ..+..+...+.++  +.++.++.
T Consensus       159 ~~~---~l~~l~~~l~~lnp~A~i~~~~~  184 (323)
T COG0523         159 DAE---ELEALEARLRKLNPRARIIETSY  184 (323)
T ss_pred             CHH---HHHHHHHHHHHhCCCCeEEEccc
Confidence            633   2455555566555  67888776

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.02  E-value=3.8e-05  Score=62.56  Aligned_cols=139  Identities=14%  Similarity=0.138  Sum_probs=71.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCC--C-ccccceeeeEE------------------EEEEEE---------CCeEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFT--T-SFITTIGIDFK------------------IRTIEL---------DGKRIK   65 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~--~-~~~~~~~~~~~------------------~~~~~~---------~~~~~~   65 (216)
                      -.++|+|++|+||||++..|...-..  . ......+.+.+                  ...+..         .-....
T Consensus       138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D  217 (374)
T PRK14722        138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH  217 (374)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence            46789999999999999998753211  0 11111111111                  111110         001257


Q ss_pred             EEEEeCCCcccccccccc---cc---ccccEEEEEEeCCC-HhHHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCCCCC
Q 027949           66 LQIWDTAGQERFRTITTA---YY---RGAMGILLVYDVTD-ESSFNNIRNWIRNIEQHASD--NVNKILVGNKADMDESK  136 (216)
Q Consensus        66 ~~i~D~~G~~~~~~~~~~---~~---~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~Dl~~~~  136 (216)
                      +.++||+|....+.....   .+   ....-.++|++++. .+.+..+..-+.........  ..+--+|+||.|-..  
T Consensus       218 lVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~--  295 (374)
T PRK14722        218 MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS--  295 (374)
T ss_pred             EEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC--
Confidence            889999996643332111   11   12334578888765 44444443333322211000  012357789999422  


Q ss_pred             CccChHHHHHHHHHhCCeEEEEe
Q 027949          137 RAVPTSKGQALADEYGIKFFETS  159 (216)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~S  159 (216)
                         ..-.+..+....+.++..++
T Consensus       296 ---~~G~~l~~~~~~~lPi~yvt  315 (374)
T PRK14722        296 ---NLGGVLDTVIRYKLPVHYVS  315 (374)
T ss_pred             ---CccHHHHHHHHHCcCeEEEe
Confidence               33456666777777666664

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.01  E-value=0.00038  Score=59.05  Aligned_cols=157  Identities=16%  Similarity=0.207  Sum_probs=79.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCC---CccccceeeeE------------------EEEEEEE---------CCeEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFT---TSFITTIGIDF------------------KIRTIEL---------DGKRIK   65 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~---~~~~~~~~~~~------------------~~~~~~~---------~~~~~~   65 (216)
                      -.|+|+|+.|+||||++..|...-..   .........+.                  .......         .-..+.
T Consensus       351 ~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~D  430 (559)
T PRK12727        351 GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDYK  430 (559)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccCC
Confidence            46789999999999999888642100   00000000000                  0011000         012368


Q ss_pred             EEEEeCCCcccccccccc---ccc--cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccC
Q 027949           66 LQIWDTAGQERFRTITTA---YYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVP  140 (216)
Q Consensus        66 ~~i~D~~G~~~~~~~~~~---~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~  140 (216)
                      +.|+||+|..........   .+.  .....++|++...  ....+...+..+..    ..+.-+|+||.|...     .
T Consensus       431 LVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~----~~~~gvILTKlDEt~-----~  499 (559)
T PRK12727        431 LVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH----AKPQGVVLTKLDETG-----R  499 (559)
T ss_pred             EEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh----hCCeEEEEecCcCcc-----c
Confidence            899999996533221110   010  1123566666653  22333333333332    235678999999422     3


Q ss_pred             hHHHHHHHHHhCCeEEEEecCCCCCH-HHHH----HHHHHHHHHHhhccc
Q 027949          141 TSKGQALADEYGIKFFETSAKTNLNV-EEVF----FSIARDIKQRLADTD  185 (216)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~Sa~~~~gi-~~l~----~~l~~~i~~~~~~~~  185 (216)
                      .-.+..+....+.++..++  +|..+ +++.    ..|++.+.......+
T Consensus       500 lG~aLsv~~~~~LPI~yvt--~GQ~VPeDL~~A~~~~Lv~r~~~l~~~~~  547 (559)
T PRK12727        500 FGSALSVVVDHQMPITWVT--DGQRVPDDLHRANAASLVLRLEDLRRAAD  547 (559)
T ss_pred             hhHHHHHHHHhCCCEEEEe--CCCCchhhhhcCCHHHHHHHHHHHHhhcc
Confidence            3456666777777776664  45555 4443    235555555444333

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.01  E-value=1.2e-05  Score=66.71  Aligned_cols=55  Identities=20%  Similarity=0.211  Sum_probs=41.9

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCC-CCccccceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   74 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   74 (216)
                      .+.|.+||.|||||||+||.|.+... ..+.+|+.+  .+..++.+..   .+.+.|+||.
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkT--KHFQTi~ls~---~v~LCDCPGL  369 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKT--KHFQTIFLSP---SVCLCDCPGL  369 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCc--ceeEEEEcCC---CceecCCCCc
Confidence            79999999999999999999999764 345556655  4444444444   5678999995

>PRK00098 GTPase RsgA; Reviewed

Probab=98.00  E-value=1.5e-05  Score=63.43  Aligned_cols=58  Identities=29%  Similarity=0.322  Sum_probs=35.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCc-ccc-----ceeeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTTS-FIT-----TIGIDFKIRTIELDGKRIKLQIWDTAGQERF   77 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   77 (216)
                      .++|+|++|+|||||+|.|++...... ..+     +..+......+...+.   ..++||||...+
T Consensus       166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~~  229 (298)
T PRK00098        166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSSF  229 (298)
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCcc
Confidence            579999999999999999997653311 111     1112222333344432   367899998543

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.99  E-value=7.9e-05  Score=59.77  Aligned_cols=23  Identities=35%  Similarity=0.404  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .-.+|.|.-|||||||+++++..
T Consensus         5 pv~iltGFLGaGKTTll~~ll~~   27 (318)
T PRK11537          5 AVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_pred             CEEEEEECCCCCHHHHHHHHHhc
Confidence            34688999999999999999864

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=97.99  E-value=1.8e-05  Score=58.16  Aligned_cols=82  Identities=18%  Similarity=0.170  Sum_probs=40.6

Q ss_pred             EEEEEEeCCCccccccc--cccc---cccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc
Q 027949           64 IKLQIWDTAGQERFRTI--TTAY---YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA  138 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~--~~~~---~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  138 (216)
                      ....|+++.|...-..+  ....   .-..+.+|.|+|+.+-.........+......     .=++|+||+|+.+..  
T Consensus        85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~-----ADvIvlnK~D~~~~~--  157 (178)
T PF02492_consen   85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF-----ADVIVLNKIDLVSDE--  157 (178)
T ss_dssp             -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT------SEEEEE-GGGHHHH--
T ss_pred             cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchh-----cCEEEEeccccCChh--
Confidence            46677788884433222  0000   12467899999997653333333322222222     228899999985422  


Q ss_pred             cChHHHHHHHHHhC
Q 027949          139 VPTSKGQALADEYG  152 (216)
Q Consensus       139 ~~~~~~~~~~~~~~  152 (216)
                      ...+..++..+..+
T Consensus       158 ~~i~~~~~~ir~ln  171 (178)
T PF02492_consen  158 QKIERVREMIRELN  171 (178)
T ss_dssp             --HHHHHHHHHHH-
T ss_pred             hHHHHHHHHHHHHC
Confidence            22244555555443

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.97  E-value=3e-05  Score=65.15  Aligned_cols=149  Identities=14%  Similarity=0.212  Sum_probs=76.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCC--c-cccceeeeEE------------------EEEEEE---------CCeEEEE
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTT--S-FITTIGIDFK------------------IRTIEL---------DGKRIKL   66 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~--~-~~~~~~~~~~------------------~~~~~~---------~~~~~~~   66 (216)
                      -++|+|++|+||||++..|...-...  . .......+.+                  ......         +-..+.+
T Consensus       258 Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d~  337 (484)
T PRK06995        258 VFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKHI  337 (484)
T ss_pred             EEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCCe
Confidence            58999999999999999987532110  0 0000000100                  000000         0012457


Q ss_pred             EEEeCCCccccccc---ccccccc---ccEEEEEEeCCC-HhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc
Q 027949           67 QIWDTAGQERFRTI---TTAYYRG---AMGILLVYDVTD-ESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAV  139 (216)
Q Consensus        67 ~i~D~~G~~~~~~~---~~~~~~~---~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~  139 (216)
                      .++||+|.......   ....+..   -.-.++|+|++. ...+.++   ...+..    ...--+|+||.|-.     .
T Consensus       338 VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i---~~~f~~----~~~~g~IlTKlDet-----~  405 (484)
T PRK06995        338 VLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEV---VQAYRG----PGLAGCILTKLDEA-----A  405 (484)
T ss_pred             EEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHH---HHHhcc----CCCCEEEEeCCCCc-----c
Confidence            78999995432211   1111111   122678888864 3333322   222221    12346678999942     2


Q ss_pred             ChHHHHHHHHHhCCeEEEEecCCCCCH-HHHHHH----HHHHHHH
Q 027949          140 PTSKGQALADEYGIKFFETSAKTNLNV-EEVFFS----IARDIKQ  179 (216)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi-~~l~~~----l~~~i~~  179 (216)
                      ..-.+..+....++++..+  .+|++| +++...    +++.++.
T Consensus       406 ~~G~~l~i~~~~~lPI~yv--t~GQ~VPeDL~~a~~~~lv~~ll~  448 (484)
T PRK06995        406 SLGGALDVVIRYKLPLHYV--SNGQRVPEDLHLANKKFLLHRAFC  448 (484)
T ss_pred             cchHHHHHHHHHCCCeEEE--ecCCCChhhhccCCHHHHHHHHhc
Confidence            3445667777888887776  467777 666433    4444444

>cd03114 ArgK-like The function of this protein family is unkown

Probab=97.95  E-value=7e-05  Score=53.32  Aligned_cols=58  Identities=24%  Similarity=0.190  Sum_probs=35.4

Q ss_pred             EEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027949           63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKAD  131 (216)
Q Consensus        63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  131 (216)
                      .+.+.|+||+|...   ....++..+|-+|++...+-.+.+.-+   ...+...+     -++++||+|
T Consensus        91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~~---k~~~~~~~-----~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQAI---KAGIMEIA-----DIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHHh---hhhHhhhc-----CEEEEeCCC
Confidence            36888999988642   223478889988888876522222111   11222222     288899987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.93  E-value=5.3e-05  Score=55.35  Aligned_cols=83  Identities=17%  Similarity=0.088  Sum_probs=45.0

Q ss_pred             EEEEEEeCCCccccccc----ccccc--ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027949           64 IKLQIWDTAGQERFRTI----TTAYY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR  137 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  137 (216)
                      +.+.++|++|...+...    ...+.  ...+.+++|+|......   ...+...+.+..  + ..-+|.||.|...   
T Consensus        83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~--~-~~~viltk~D~~~---  153 (173)
T cd03115          83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL--G-ITGVILTKLDGDA---  153 (173)
T ss_pred             CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC--C-CCEEEEECCcCCC---
Confidence            56788999997432111    11111  24788999999865432   223333333322  2 3567789999533   


Q ss_pred             ccChHHHHHHHHHhCCeEEE
Q 027949          138 AVPTSKGQALADEYGIKFFE  157 (216)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~  157 (216)
                        ....+...+...++|+..
T Consensus       154 --~~g~~~~~~~~~~~p~~~  171 (173)
T cd03115         154 --RGGAALSIRAVTGKPIKF  171 (173)
T ss_pred             --CcchhhhhHHHHCcCeEe
Confidence              122233366666666543

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.93  E-value=6.8e-06  Score=61.30  Aligned_cols=93  Identities=18%  Similarity=0.104  Sum_probs=51.4

Q ss_pred             EEEEEEeCCCccccccc----cccccc--cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027949           64 IKLQIWDTAGQERFRTI----TTAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR  137 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  137 (216)
                      +.+.++||+|.......    ...++.  ..+-+++|.+++....  .+... ..+....   .+--++++|.|-..   
T Consensus        84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~--~~~~~-~~~~~~~---~~~~lIlTKlDet~---  154 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE--DLEQA-LAFYEAF---GIDGLILTKLDETA---  154 (196)
T ss_dssp             SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH--HHHHH-HHHHHHS---STCEEEEESTTSSS---
T ss_pred             CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH--HHHHH-HHHhhcc---cCceEEEEeecCCC---
Confidence            56889999996543321    111111  4567888999876542  22222 2222222   12356799999422   


Q ss_pred             ccChHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q 027949          138 AVPTSKGQALADEYGIKFFETSAKTNLNVEEV  169 (216)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  169 (216)
                        ..-.+..++...+.|+-.++  +|.+++++
T Consensus       155 --~~G~~l~~~~~~~~Pi~~it--~Gq~V~Dl  182 (196)
T PF00448_consen  155 --RLGALLSLAYESGLPISYIT--TGQRVDDL  182 (196)
T ss_dssp             --TTHHHHHHHHHHTSEEEEEE--SSSSTTGE
T ss_pred             --CcccceeHHHHhCCCeEEEE--CCCChhcC
Confidence              33456677778888877774  44554443

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.91  E-value=0.00017  Score=58.85  Aligned_cols=158  Identities=16%  Similarity=0.166  Sum_probs=79.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCC--C-CccccceeeeEEEE------------------EEEE---------CCeEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSF--T-TSFITTIGIDFKIR------------------TIEL---------DGKRIK   65 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~--~-~~~~~~~~~~~~~~------------------~~~~---------~~~~~~   65 (216)
                      =.|+++|+.|+||||.+-.|...-.  . .......++|.+-.                  .+..         .-..+.
T Consensus       204 ~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~d  283 (407)
T COG1419         204 RVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDCD  283 (407)
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcCC
Confidence            4579999999999999988865433  1 11111122111111                  0000         012357


Q ss_pred             EEEEeCCCcccccccc----ccccccc--cEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc
Q 027949           66 LQIWDTAGQERFRTIT----TAYYRGA--MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAV  139 (216)
Q Consensus        66 ~~i~D~~G~~~~~~~~----~~~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~  139 (216)
                      +.++||.|...++...    ..++..+  .-+.+|++++...  ..+...+..+....    .-=+++||.|-.     .
T Consensus       284 ~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlkei~~~f~~~~----i~~~I~TKlDET-----~  352 (407)
T COG1419         284 VILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKEIIKQFSLFP----IDGLIFTKLDET-----T  352 (407)
T ss_pred             EEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHHHHHHHhccCC----cceeEEEccccc-----C
Confidence            8899999977655432    2222222  2345566665432  34444444443221    124668999932     2


Q ss_pred             ChHHHHHHHHHhCCeEEEEe--cCCCCCHHHH-HHHHHHHHHHHhhcc
Q 027949          140 PTSKGQALADEYGIKFFETS--AKTNLNVEEV-FFSIARDIKQRLADT  184 (216)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~S--a~~~~gi~~l-~~~l~~~i~~~~~~~  184 (216)
                      ..-....+..+.+.|+..++  ..=+++|... -.||++.+.......
T Consensus       353 s~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~~~~~  400 (407)
T COG1419         353 SLGNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGTFANQ  400 (407)
T ss_pred             chhHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhcccccC
Confidence            34445555666665554443  2223333322 345666666544333

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.88  E-value=1.5e-05  Score=65.01  Aligned_cols=85  Identities=14%  Similarity=0.049  Sum_probs=47.1

Q ss_pred             EEEEEEeCCCccccccc----ccccc--ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027949           64 IKLQIWDTAGQERFRTI----TTAYY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR  137 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  137 (216)
                      +.+.|+||+|.......    ...++  ...+.+++|+|++-..  ..+...+..+...    ..--+|+||.|-..   
T Consensus       321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~~----~idglI~TKLDET~---  391 (436)
T PRK11889        321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKDI----HIDGIVFTKFDETA---  391 (436)
T ss_pred             CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcCC----CCCEEEEEcccCCC---
Confidence            57899999997542221    11222  1245678888875332  2223333333321    23367789999432   


Q ss_pred             ccChHHHHHHHHHhCCeEEEEe
Q 027949          138 AVPTSKGQALADEYGIKFFETS  159 (216)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~S  159 (216)
                        ..-.+..++...+.|+..++
T Consensus       392 --k~G~iLni~~~~~lPIsyit  411 (436)
T PRK11889        392 --SSGELLKIPAVSSAPIVLMT  411 (436)
T ss_pred             --CccHHHHHHHHHCcCEEEEe
Confidence              23355666777777776664

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.87  E-value=2.4e-05  Score=65.18  Aligned_cols=86  Identities=17%  Similarity=0.076  Sum_probs=48.7

Q ss_pred             EEEEEEeCCCcccccccc----c--cccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027949           64 IKLQIWDTAGQERFRTIT----T--AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR  137 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~----~--~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  137 (216)
                      ..+.|+||+|........    .  ......|.+++|+|++...   ........+....   ...-+|+||.|...   
T Consensus       176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l---~i~gvIlTKlD~~a---  246 (437)
T PRK00771        176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV---GIGGIIITKLDGTA---  246 (437)
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC---CCCEEEEecccCCC---
Confidence            378999999975433211    0  1123578899999987643   2222233333221   12367789999532   


Q ss_pred             ccChHHHHHHHHHhCCeEEEEec
Q 027949          138 AVPTSKGQALADEYGIKFFETSA  160 (216)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~Sa  160 (216)
                        ..-.+..+....+.|+.+++.
T Consensus       247 --~~G~~ls~~~~~~~Pi~fig~  267 (437)
T PRK00771        247 --KGGGALSAVAETGAPIKFIGT  267 (437)
T ss_pred             --cccHHHHHHHHHCcCEEEEec
Confidence              223455666677777766643

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.85  E-value=6.6e-05  Score=54.60  Aligned_cols=136  Identities=23%  Similarity=0.314  Sum_probs=62.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeC-CCc---------------------
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT-AGQ---------------------   74 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~G~---------------------   74 (216)
                      +|.+.|.+|+||||++++++..-.. ...+..+  +....+.-++..+-+.+.|. .|.                     
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~-~~~~v~G--f~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~   77 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKK-KGLPVGG--FYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD   77 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHH-TCGGEEE--EEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhc-cCCccce--EEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence            6899999999999999998754211 1112222  22223334444444455555 221                     


Q ss_pred             -ccccccccccccc--ccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCC-CCCCCCCccChHHHHHHHHH
Q 027949           75 -ERFRTITTAYYRG--AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA-DMDESKRAVPTSKGQALADE  150 (216)
Q Consensus        75 -~~~~~~~~~~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~-Dl~~~~~~~~~~~~~~~~~~  150 (216)
                       +.+.......++.  .+.=++|+|=-.+-.+ ....|...+......+.|++.++-+. +.         ..+..+...
T Consensus        78 ~e~fe~~~~~~L~~~~~~~~liviDEIG~mEl-~~~~F~~~v~~~l~s~~~vi~vv~~~~~~---------~~l~~i~~~  147 (168)
T PF03266_consen   78 LESFEEIGLPALRNALSSSDLIVIDEIGKMEL-KSPGFREAVEKLLDSNKPVIGVVHKRSDN---------PFLEEIKRR  147 (168)
T ss_dssp             HHHHHCCCCCCCHHHHHCCHEEEE---STTCC-C-CHHHHHHHHHHCTTSEEEEE--SS--S---------CCHHHHHTT
T ss_pred             HHHHHHHHHHHHHhhcCCCCEEEEeccchhhh-cCHHHHHHHHHHHcCCCcEEEEEecCCCc---------HHHHHHHhC
Confidence             1111111112221  1223667774333211 11123334444444568888888766 31         234455666


Q ss_pred             hCCeEEEEecCCCCC
Q 027949          151 YGIKFFETSAKTNLN  165 (216)
Q Consensus       151 ~~~~~~~~Sa~~~~g  165 (216)
                      .++.++.++..+.+-
T Consensus       148 ~~~~i~~vt~~NRd~  162 (168)
T PF03266_consen  148 PDVKIFEVTEENRDA  162 (168)
T ss_dssp             TTSEEEE--TTTCCC
T ss_pred             CCcEEEEeChhHHhh
Confidence            678888887655443

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.83  E-value=4.3e-05  Score=58.90  Aligned_cols=63  Identities=24%  Similarity=0.469  Sum_probs=48.9

Q ss_pred             CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCC----ccccceeeeEEEEEEEECCeEEEEEEEeCCC
Q 027949           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTT----SFITTIGIDFKIRTIELDGKRIKLQIWDTAG   73 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   73 (216)
                      ...+.++|+-+|..|.|||||+..|.+-.+..    +..++.........+.-.+..++++++||.|
T Consensus        38 ~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG  104 (406)
T KOG3859|consen   38 SQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG  104 (406)
T ss_pred             hcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence            34678999999999999999999999977653    3445555555555555577778999999998

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.83  E-value=0.0002  Score=59.70  Aligned_cols=93  Identities=16%  Similarity=0.193  Sum_probs=50.8

Q ss_pred             EEEEEEeCCCcccccc----ccccccc---cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027949           64 IKLQIWDTAGQERFRT----ITTAYYR---GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK  136 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~----~~~~~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  136 (216)
                      +.+.|+||+|......    ....++.   .-.-+++|++++-..  ..+...+..+...   + +--+|+||.|-..  
T Consensus       300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f~~~---~-~~~vI~TKlDet~--  371 (424)
T PRK05703        300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHFSRL---P-LDGLIFTKLDETS--  371 (424)
T ss_pred             CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHhCCC---C-CCEEEEecccccc--
Confidence            6789999999654321    1222222   223566777775432  2332322222211   1 2367899999422  


Q ss_pred             CccChHHHHHHHHHhCCeEEEEecCCCCCH-HHH
Q 027949          137 RAVPTSKGQALADEYGIKFFETSAKTNLNV-EEV  169 (216)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi-~~l  169 (216)
                         ..-.+..+....++++..++  +|.++ +++
T Consensus       372 ---~~G~i~~~~~~~~lPv~yit--~Gq~VpdDl  400 (424)
T PRK05703        372 ---SLGSILSLLIESGLPISYLT--NGQRVPDDI  400 (424)
T ss_pred             ---cccHHHHHHHHHCCCEEEEe--CCCCChhhh
Confidence               23357777888888877664  45554 444

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.81  E-value=5.4e-05  Score=66.75  Aligned_cols=152  Identities=14%  Similarity=0.114  Sum_probs=78.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCC--Cc-cccceeeeEEE----------------EEEEE-----------CCeEEEE
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFT--TS-FITTIGIDFKI----------------RTIEL-----------DGKRIKL   66 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~--~~-~~~~~~~~~~~----------------~~~~~-----------~~~~~~~   66 (216)
                      -|+|+|++|+||||++..|...-..  .. .....+.+.+.                ..+..           .-..+.+
T Consensus       187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D~  266 (767)
T PRK14723        187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKHL  266 (767)
T ss_pred             EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCCE
Confidence            5799999999999999998753211  00 00000111000                00000           0112478


Q ss_pred             EEEeCCCccccccccc----cc--cccccEEEEEEeCCC-HhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc
Q 027949           67 QIWDTAGQERFRTITT----AY--YRGAMGILLVYDVTD-ESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAV  139 (216)
Q Consensus        67 ~i~D~~G~~~~~~~~~----~~--~~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~  139 (216)
                      .|+||+|....+....    ..  ...-+-.++|+|++. .+.+.++..   .+...... .+-=+|+||.|-..     
T Consensus       267 VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~---~f~~~~~~-~i~glIlTKLDEt~-----  337 (767)
T PRK14723        267 VLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVH---AYRHGAGE-DVDGCIITKLDEAT-----  337 (767)
T ss_pred             EEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHH---HHhhcccC-CCCEEEEeccCCCC-----
Confidence            8999999543222111    11  112345788888864 333443333   22221100 13367799999432     


Q ss_pred             ChHHHHHHHHHhCCeEEEEecCCCCCH-HHHHHH----HHHHHHH
Q 027949          140 PTSKGQALADEYGIKFFETSAKTNLNV-EEVFFS----IARDIKQ  179 (216)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi-~~l~~~----l~~~i~~  179 (216)
                      ..-.+..+....++++..+  .+|++| +++...    +++.++.
T Consensus       338 ~~G~iL~i~~~~~lPI~yi--t~GQ~VPdDL~~a~~~~lv~~ll~  380 (767)
T PRK14723        338 HLGPALDTVIRHRLPVHYV--STGQKVPEHLELAQADELVDRAFA  380 (767)
T ss_pred             CccHHHHHHHHHCCCeEEE--ecCCCChhhcccCCHHHHHHHHhc
Confidence            2345666777778877777  466777 666433    4444443

>TIGR00959 ffh signal recognition particle protein

Probab=97.78  E-value=3.8e-05  Score=63.87  Aligned_cols=86  Identities=19%  Similarity=0.095  Sum_probs=49.8

Q ss_pred             EEEEEEeCCCcccccccccc----c--cccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027949           64 IKLQIWDTAGQERFRTITTA----Y--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR  137 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~----~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  137 (216)
                      +.+.|+||+|....+...-.    +  .-..+.+++|+|+....   ........+....   ...-+|+||.|-..   
T Consensus       183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v---~i~giIlTKlD~~~---  253 (428)
T TIGR00959       183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL---GLTGVVLTKLDGDA---  253 (428)
T ss_pred             CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC---CCCEEEEeCccCcc---
Confidence            57899999996433221111    1  12467789999987543   3333334443322   12366799999422   


Q ss_pred             ccChHHHHHHHHHhCCeEEEEec
Q 027949          138 AVPTSKGQALADEYGIKFFETSA  160 (216)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~Sa  160 (216)
                        ..-.+..+....++|+.++..
T Consensus       254 --~~G~~lsi~~~~~~PI~fi~~  274 (428)
T TIGR00959       254 --RGGAALSVRSVTGKPIKFIGV  274 (428)
T ss_pred             --cccHHHHHHHHHCcCEEEEeC
Confidence              122366777778887776654

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK10867 signal recognition particle protein; Provisional

Probab=97.73  E-value=5.2e-05  Score=63.07  Aligned_cols=86  Identities=19%  Similarity=0.082  Sum_probs=48.3

Q ss_pred             EEEEEEeCCCccccccccc----cc--cccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027949           64 IKLQIWDTAGQERFRTITT----AY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR  137 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~----~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  137 (216)
                      +.+.|+||+|....+...-    .+  .-..+.+++|+|+....   .+......+....   ...-+|+||.|-..   
T Consensus       184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~---~i~giIlTKlD~~~---  254 (433)
T PRK10867        184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL---GLTGVILTKLDGDA---  254 (433)
T ss_pred             CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC---CCCEEEEeCccCcc---
Confidence            6789999999643222110    01  11356779999986542   3333333343322   12356789999522   


Q ss_pred             ccChHHHHHHHHHhCCeEEEEec
Q 027949          138 AVPTSKGQALADEYGIKFFETSA  160 (216)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~Sa  160 (216)
                        ..-.+.......++|+.++..
T Consensus       255 --rgG~alsi~~~~~~PI~fig~  275 (433)
T PRK10867        255 --RGGAALSIRAVTGKPIKFIGT  275 (433)
T ss_pred             --cccHHHHHHHHHCcCEEEEeC
Confidence              112366667777887776654

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.71  E-value=0.001  Score=54.73  Aligned_cols=103  Identities=12%  Similarity=0.064  Sum_probs=56.3

Q ss_pred             EEEEEEeCCCccccccc----ccccccc--cc-EEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027949           64 IKLQIWDTAGQERFRTI----TTAYYRG--AM-GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK  136 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~----~~~~~~~--~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  136 (216)
                      +.+.++||+|.......    ...++..  .+ -.++|+|++...  ..+...+..+..    -.+--+|+||.|-..  
T Consensus       255 ~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~~~~----~~~~~~I~TKlDet~--  326 (388)
T PRK12723        255 FDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQFSP----FSYKTVIFTKLDETT--  326 (388)
T ss_pred             CCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHHhcC----CCCCEEEEEeccCCC--
Confidence            68899999996543321    1122221  12 478888987653  233333333321    123467889999432  


Q ss_pred             CccChHHHHHHHHHhCCeEEEEecCCCCCH-HHHHHHHHHHHHH
Q 027949          137 RAVPTSKGQALADEYGIKFFETSAKTNLNV-EEVFFSIARDIKQ  179 (216)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi-~~l~~~l~~~i~~  179 (216)
                         ..-.+..++...+.|+..+  .+|.++ +++...=.+.+.+
T Consensus       327 ---~~G~~l~~~~~~~~Pi~yi--t~Gq~vPeDl~~~~~~~~~~  365 (388)
T PRK12723        327 ---CVGNLISLIYEMRKEVSYV--TDGQIVPHNISIAEPLTFIK  365 (388)
T ss_pred             ---cchHHHHHHHHHCCCEEEE--eCCCCChhhhhhCCHHHHHH
Confidence               2334556677777777666  456666 5554443333333

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.68  E-value=0.00025  Score=57.50  Aligned_cols=21  Identities=24%  Similarity=0.423  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027949           18 LLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~   38 (216)
                      .+|.|.-|||||||+++++..
T Consensus         7 ~iltGFLGaGKTTll~~ll~~   27 (341)
T TIGR02475         7 TIVTGFLGAGKTTLIRHLLQN   27 (341)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            688999999999999999864

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.67  E-value=9.3e-05  Score=57.93  Aligned_cols=61  Identities=16%  Similarity=0.235  Sum_probs=38.6

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCC------CccccceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFT------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   74 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   74 (216)
                      ....+.++|+|.||+|||||+|.+......      ....++.+..... .+.+... -.+.+.||||.
T Consensus       140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~-~iri~~r-p~vy~iDTPGi  206 (335)
T KOG2485|consen  140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSE-RIRISHR-PPVYLIDTPGI  206 (335)
T ss_pred             cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehh-heEeccC-CceEEecCCCc
Confidence            345589999999999999999998654322      2233444433222 1333322 24677899995

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.66  E-value=0.00021  Score=41.60  Aligned_cols=44  Identities=27%  Similarity=0.296  Sum_probs=28.7

Q ss_pred             cccEEEEEEeCCCHh--HHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027949           87 GAMGILLVYDVTDES--SFNNIRNWIRNIEQHASDNVNKILVGNKAD  131 (216)
Q Consensus        87 ~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  131 (216)
                      -.++++|++|.+...  +.+.-..++..+..... +.|+++|+||+|
T Consensus        13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D   58 (58)
T PF06858_consen   13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID   58 (58)
T ss_dssp             T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred             hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence            367899999998754  45555567777877765 689999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.57  E-value=0.00032  Score=57.17  Aligned_cols=91  Identities=10%  Similarity=0.091  Sum_probs=48.7

Q ss_pred             EEEEEEeCCCcccccccc----ccccc--cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027949           64 IKLQIWDTAGQERFRTIT----TAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR  137 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~----~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  137 (216)
                      +.+.|+||+|........    ..+..  ..+.+++|.++..  ...++...+..+..    -.+--+|+||.|-..   
T Consensus       286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f~~----l~i~glI~TKLDET~---  356 (407)
T PRK12726        286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKLAE----IPIDGFIITKMDETT---  356 (407)
T ss_pred             CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhcCc----CCCCEEEEEcccCCC---
Confidence            688999999975433211    11111  2355666766532  22233333322211    123367799999432   


Q ss_pred             ccChHHHHHHHHHhCCeEEEEecCCCCCHH
Q 027949          138 AVPTSKGQALADEYGIKFFETSAKTNLNVE  167 (216)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  167 (216)
                        ..-.+..++...+.|+..++  +|.++.
T Consensus       357 --~~G~~Lsv~~~tglPIsylt--~GQ~Vp  382 (407)
T PRK12726        357 --RIGDLYTVMQETNLPVLYMT--DGQNIT  382 (407)
T ss_pred             --CccHHHHHHHHHCCCEEEEe--cCCCCC
Confidence              33456667778887777665  344443

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.55  E-value=0.00087  Score=49.19  Aligned_cols=23  Identities=17%  Similarity=0.335  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++++|++|+|||||++.+.+..
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            67999999999999999999764

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.54  E-value=0.00088  Score=55.39  Aligned_cols=133  Identities=21%  Similarity=0.264  Sum_probs=68.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCC-CC-Cccc--------------------cceeeeEEEEE-E-----EECCeEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGS-FT-TSFI--------------------TTIGIDFKIRT-I-----ELDGKRIKLQ   67 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~-~~-~~~~--------------------~~~~~~~~~~~-~-----~~~~~~~~~~   67 (216)
                      .-++|+|++||||||++..|.... .. ....                    ...+....... .     ......+.+.
T Consensus       224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V  303 (432)
T PRK12724        224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI  303 (432)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence            458899999999999999886421 00 0000                    00011110000 0     0011235778


Q ss_pred             EEeCCCcccccc----ccccccc-----cccEEEEEEeCCCHh-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027949           68 IWDTAGQERFRT----ITTAYYR-----GAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR  137 (216)
Q Consensus        68 i~D~~G~~~~~~----~~~~~~~-----~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  137 (216)
                      ++||+|......    .+..++.     ..+-.++|+|++... ....+   ...+..    --+--+|+||.|-..   
T Consensus       304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~---~~~f~~----~~~~glIlTKLDEt~---  373 (432)
T PRK12724        304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTV---LKAYES----LNYRRILLTKLDEAD---  373 (432)
T ss_pred             EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHH---HHHhcC----CCCCEEEEEcccCCC---
Confidence            999999643221    1111111     123577888887543 33333   222211    123367789999422   


Q ss_pred             ccChHHHHHHHHHhCCeEEEEec
Q 027949          138 AVPTSKGQALADEYGIKFFETSA  160 (216)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~Sa  160 (216)
                        ..-.+..++...+.|+..++.
T Consensus       374 --~~G~il~i~~~~~lPI~ylt~  394 (432)
T PRK12724        374 --FLGSFLELADTYSKSFTYLSV  394 (432)
T ss_pred             --CccHHHHHHHHHCCCEEEEec
Confidence              223466667777777766643

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.53  E-value=0.00083  Score=43.50  Aligned_cols=69  Identities=17%  Similarity=0.211  Sum_probs=42.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccc-cccccccccEEEEEEe
Q 027949           18 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-TTAYYRGAMGILLVYD   96 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~d~~i~v~d   96 (216)
                      +++.|..|+||||+...+...-...      +  ....  -.+    .+.++|+++....... .......+|.++++++
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~------g--~~v~--~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~   67 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKR------G--KRVL--LID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT   67 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHC------C--CeEE--EEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence            6788999999999998876532110      0  1111  111    5778899876432221 1345567888888887


Q ss_pred             CCCH
Q 027949           97 VTDE  100 (216)
Q Consensus        97 ~~~~  100 (216)
                      ....
T Consensus        68 ~~~~   71 (99)
T cd01983          68 PEAL   71 (99)
T ss_pred             Cchh
Confidence            7644

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.52  E-value=8.6e-05  Score=59.89  Aligned_cols=58  Identities=21%  Similarity=0.357  Sum_probs=43.0

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   74 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   74 (216)
                      -...+++.|+|.|++||||+||.|...... ....|+.+  .....+..+.   .+.|.|.||.
T Consensus       249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT--~smqeV~Ldk---~i~llDsPgi  307 (435)
T KOG2484|consen  249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVT--RSMQEVKLDK---KIRLLDSPGI  307 (435)
T ss_pred             cCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccch--hhhhheeccC---CceeccCCce
Confidence            355699999999999999999999887753 33344444  4455555554   6788999994

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=97.50  E-value=0.014  Score=42.14  Aligned_cols=141  Identities=11%  Similarity=0.074  Sum_probs=91.6

Q ss_pred             CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027949           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      +......|+++|..+.++..|.+.+...+-.          . ...+....        ..|=..+    ....-...|.
T Consensus        11 p~ln~atiLLVg~e~~~~~~LA~a~l~~~~~----------~-~l~Vh~a~--------sLPLp~e----~~~lRprIDl   67 (176)
T PF11111_consen   11 PELNTATILLVGTEEALLQQLAEAMLEEDKE----------F-KLKVHLAK--------SLPLPSE----NNNLRPRIDL   67 (176)
T ss_pred             CCcceeEEEEecccHHHHHHHHHHHHhhccc----------e-eEEEEEec--------cCCCccc----ccCCCceeEE
Confidence            3455789999999999999999999863211          1 11111111        0111111    1112345899


Q ss_pred             EEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q 027949           91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF  170 (216)
Q Consensus        91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  170 (216)
                      ++|++|.....++..++.-+..+....-.++ +.++.+-.... ....+....+.+++..+.++++.+.-...++...+-
T Consensus        68 IVFvinl~sk~SL~~ve~SL~~vd~~fflGK-VCfl~t~a~~~-~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lA  145 (176)
T PF11111_consen   68 IVFVINLHSKYSLQSVEASLSHVDPSFFLGK-VCFLATNAGRE-SHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLA  145 (176)
T ss_pred             EEEEEecCCcccHHHHHHHHhhCChhhhccc-eEEEEcCCCcc-cccccCHHHHHHHHHHhCCCEEEeecccchHHHHHH
Confidence            9999999999999999887777755443344 34444444432 235678899999999999999999877776665555


Q ss_pred             HHHHHH
Q 027949          171 FSIARD  176 (216)
Q Consensus       171 ~~l~~~  176 (216)
                      +.|++.
T Consensus       146 qRLL~~  151 (176)
T PF11111_consen  146 QRLLRM  151 (176)
T ss_pred             HHHHHH
Confidence            544443

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.47  E-value=0.0001  Score=50.40  Aligned_cols=22  Identities=27%  Similarity=0.519  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .|+|.|++||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999864

...

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.45  E-value=0.00062  Score=53.27  Aligned_cols=133  Identities=18%  Similarity=0.135  Sum_probs=69.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCC-----------Ccc--------ccceeeeEEEEEEEE------------CCeEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFT-----------TSF--------ITTIGIDFKIRTIEL------------DGKRI   64 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~-----------~~~--------~~~~~~~~~~~~~~~------------~~~~~   64 (216)
                      -+++++|++|+||||++..+...-..           ...        .......+.......            ....+
T Consensus        76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~  155 (270)
T PRK06731         76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV  155 (270)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence            58999999999999999887552100           000        000000111111000            11136


Q ss_pred             EEEEEeCCCccccccc----ccccc--ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc
Q 027949           65 KLQIWDTAGQERFRTI----TTAYY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA  138 (216)
Q Consensus        65 ~~~i~D~~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  138 (216)
                      .+.|+||+|.......    +..++  ...+-+++|+|++...  ..+..++..+..    -.+--+++||.|-..    
T Consensus       156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~----~~~~~~I~TKlDet~----  225 (270)
T PRK06731        156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD----IHIDGIVFTKFDETA----  225 (270)
T ss_pred             CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCC----CCCCEEEEEeecCCC----
Confidence            8899999997532221    11111  1345678899986322  222233333322    123467889999432    


Q ss_pred             cChHHHHHHHHHhCCeEEEEe
Q 027949          139 VPTSKGQALADEYGIKFFETS  159 (216)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~S  159 (216)
                       ..-.+..++...+.|+..++
T Consensus       226 -~~G~~l~~~~~~~~Pi~~it  245 (270)
T PRK06731        226 -SSGELLKIPAVSSAPIVLMT  245 (270)
T ss_pred             -CccHHHHHHHHHCcCEEEEe
Confidence             23345566677777776664

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.45  E-value=0.0001  Score=54.10  Aligned_cols=23  Identities=30%  Similarity=0.696  Sum_probs=21.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      ++|+|+|+|||||||+.+.|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999876

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.44  E-value=9.1e-05  Score=53.95  Aligned_cols=24  Identities=38%  Similarity=0.603  Sum_probs=21.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .=++|.|++|+||||++++|+...
T Consensus         5 ~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           5 LLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhc
Confidence            457899999999999999999876

>PRK08118 topology modulation protein; Reviewed

Probab=97.43  E-value=0.00013  Score=53.12  Aligned_cols=23  Identities=39%  Similarity=0.658  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .+|+|+|++|||||||.+.|...
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999999864

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.42  E-value=0.0022  Score=48.59  Aligned_cols=61  Identities=23%  Similarity=0.247  Sum_probs=37.9

Q ss_pred             EEEEEeC-CCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027949           65 KLQIWDT-AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKAD  131 (216)
Q Consensus        65 ~~~i~D~-~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  131 (216)
                      .+.++|| +|.++   +-+...+.+|.+|+|+|.+.. ++...++.. .+.+... -.++.+|+||.|
T Consensus       135 e~VivDtEAGiEH---fgRg~~~~vD~vivVvDpS~~-sl~taeri~-~L~~elg-~k~i~~V~NKv~  196 (255)
T COG3640         135 EVVIVDTEAGIEH---FGRGTIEGVDLVIVVVDPSYK-SLRTAERIK-ELAEELG-IKRIFVVLNKVD  196 (255)
T ss_pred             cEEEEecccchhh---hccccccCCCEEEEEeCCcHH-HHHHHHHHH-HHHHHhC-CceEEEEEeecc
Confidence            4555565 23433   334455679999999998743 444444433 3333332 378999999998

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.41  E-value=0.00084  Score=44.55  Aligned_cols=82  Identities=16%  Similarity=0.207  Sum_probs=48.9

Q ss_pred             EEEEc-CCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 027949           18 LLLIG-DSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (216)
Q Consensus        18 i~v~G-~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (216)
                      |.|.| ..|+||||+...+...-.. ..       .....+..+.. +.+.++|+|+....  .....+..+|.++++++
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~-~~-------~~vl~~d~d~~-~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~   70 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALAR-RG-------KRVLLIDLDPQ-YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQ   70 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHh-CC-------CcEEEEeCCCC-CCEEEEeCcCCCCH--HHHHHHHHCCEEEEecc
Confidence            56677 5589999998776532211 11       11122222222 67889999986432  23356677999999887


Q ss_pred             CCCHhHHHHHHHHHH
Q 027949           97 VTDESSFNNIRNWIR  111 (216)
Q Consensus        97 ~~~~~~~~~~~~~~~  111 (216)
                      .+ ..++..+..++.
T Consensus        71 ~~-~~s~~~~~~~~~   84 (104)
T cd02042          71 PS-PLDLDGLEKLLE   84 (104)
T ss_pred             CC-HHHHHHHHHHHH
Confidence            75 445555555544

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.41  E-value=0.00026  Score=56.17  Aligned_cols=144  Identities=18%  Similarity=0.167  Sum_probs=76.9

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcC----CCCCcc-----------------ccc---------eeeeEEEEEEE---E-
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDG----SFTTSF-----------------ITT---------IGIDFKIRTIE---L-   59 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~----~~~~~~-----------------~~~---------~~~~~~~~~~~---~-   59 (216)
                      ...-|+|+|-.|+||||.|-.|...    ......                 ...         .+-+.....+.   . 
T Consensus       138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~A  217 (340)
T COG0552         138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAA  217 (340)
T ss_pred             CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHH
Confidence            3578899999999999999887551    100000                 000         01111100000   0 


Q ss_pred             CCeEEEEEEEeCCCcccccccccc-------ccccc-----cEEEEEEeCCCHh-HHHHHHHHHHHHHHhcCCCCcEEEE
Q 027949           60 DGKRIKLQIWDTAGQERFRTITTA-------YYRGA-----MGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKILV  126 (216)
Q Consensus        60 ~~~~~~~~i~D~~G~~~~~~~~~~-------~~~~~-----d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv  126 (216)
                      ..+.+.+.|+||+|.-+.......       .+...     |=++++.|+.-.. ++.+++.+. ....      ---++
T Consensus       218 kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~-eav~------l~GiI  290 (340)
T COG0552         218 KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFN-EAVG------LDGII  290 (340)
T ss_pred             HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHH-HhcC------CceEE
Confidence            123478999999996443322111       11122     3377777987654 444543332 2211      12567


Q ss_pred             EeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q 027949          127 GNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFF  171 (216)
Q Consensus       127 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  171 (216)
                      ++|.|-.. ..-    .+..++..+++|+.++  --|+++++|..
T Consensus       291 lTKlDgtA-KGG----~il~I~~~l~~PI~fi--GvGE~~~DL~~  328 (340)
T COG0552         291 LTKLDGTA-KGG----IILSIAYELGIPIKFI--GVGEGYDDLRP  328 (340)
T ss_pred             EEecccCC-Ccc----eeeeHHHHhCCCEEEE--eCCCChhhccc
Confidence            89999532 221    2334567778888877  35777777743

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=97.41  E-value=0.00087  Score=55.97  Aligned_cols=118  Identities=21%  Similarity=0.223  Sum_probs=75.6

Q ss_pred             CCCceEEEEEEcCCCCcHHHHHHHHHcCCCC----------------CccccceeeeEEEEEEEE--------------C
Q 027949           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFT----------------TSFITTIGIDFKIRTIEL--------------D   60 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~--------------~   60 (216)
                      +..+.=++-|+....-|||||...|..+.-.                .+.....++......+.+              +
T Consensus        15 k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d   94 (842)
T KOG0469|consen   15 KKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGD   94 (842)
T ss_pred             cccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCC
Confidence            3445567788999999999999988542211                011111121111111111              3


Q ss_pred             CeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 027949           61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADM  132 (216)
Q Consensus        61 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  132 (216)
                      +..+-++++|.||+-.|.+.....++-.|+.++|+|.-+.-..+.--.+.+.+.++    +..++++||.|.
T Consensus        95 ~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ER----IkPvlv~NK~DR  162 (842)
T KOG0469|consen   95 GNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER----IKPVLVMNKMDR  162 (842)
T ss_pred             CcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhh----ccceEEeehhhH
Confidence            44588999999999999999999999999999999987653333222233444443    444778999994

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.40  E-value=0.00011  Score=59.12  Aligned_cols=47  Identities=15%  Similarity=0.143  Sum_probs=28.7

Q ss_pred             eEEEEEEEeCCCccccccc-cccc-----cccccEEEEEEeCCCHhHHHHHHH
Q 027949           62 KRIKLQIWDTAGQERFRTI-TTAY-----YRGAMGILLVYDVTDESSFNNIRN  108 (216)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~-~~~~-----~~~~d~~i~v~d~~~~~~~~~~~~  108 (216)
                      +.+.+.|+||+|....... ....     .-.-|-+|+|.|++-.........
T Consensus       182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~  234 (483)
T KOG0780|consen  182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQAR  234 (483)
T ss_pred             cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHH
Confidence            3489999999996542221 1111     113578999999987655444333

>PRK07261 topology modulation protein; Provisional

Probab=97.40  E-value=0.00014  Score=53.03  Aligned_cols=22  Identities=45%  Similarity=0.632  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      +|+|+|++|||||||.+.|...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            7999999999999999998754

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.39  E-value=0.00024  Score=58.26  Aligned_cols=85  Identities=16%  Similarity=0.036  Sum_probs=46.0

Q ss_pred             EEEEEEeCCCccccccccccc------cccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027949           64 IKLQIWDTAGQERFRTITTAY------YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR  137 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~------~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  137 (216)
                      +.+.|+||+|....+...-..      .-+-|=+++|+|+.-.+.   +...-..+.+..+   -.=||++|.|-.. . 
T Consensus       183 ~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQd---A~~~A~aF~e~l~---itGvIlTKlDGda-R-  254 (451)
T COG0541         183 YDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQD---AVNTAKAFNEALG---ITGVILTKLDGDA-R-  254 (451)
T ss_pred             CCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchH---HHHHHHHHhhhcC---CceEEEEcccCCC-c-
Confidence            588999999975544322111      123567999999876543   3333333444322   1156789999521 1 


Q ss_pred             ccChHHHHHHHHHhCCeEEEEe
Q 027949          138 AVPTSKGQALADEYGIKFFETS  159 (216)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~S  159 (216)
                         --.+.......+.|+.++.
T Consensus       255 ---GGaALS~~~~tg~PIkFiG  273 (451)
T COG0541         255 ---GGAALSARAITGKPIKFIG  273 (451)
T ss_pred             ---chHHHhhHHHHCCCeEEEe
Confidence               1223344445565655553

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.37  E-value=0.00021  Score=42.63  Aligned_cols=21  Identities=38%  Similarity=0.504  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~   37 (216)
                      ..+|.|+.|+||||++.++.-
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            379999999999999988754

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.37  E-value=0.00022  Score=53.21  Aligned_cols=24  Identities=38%  Similarity=0.451  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSF   40 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~   40 (216)
                      .++|+|++|||||||++++.+-+.
T Consensus        30 vv~iiGpSGSGKSTlLRclN~LE~   53 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLNGLEE   53 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCcC
Confidence            579999999999999999987653

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.36  E-value=0.00015  Score=50.97  Aligned_cols=21  Identities=38%  Similarity=0.634  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027949           18 LLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~   38 (216)
                      |+++|++|||||||++.+...
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~   22 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKR   22 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999999854

...

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.34  E-value=0.0012  Score=45.91  Aligned_cols=24  Identities=33%  Similarity=0.488  Sum_probs=21.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      -.++|.|++|+|||++++.+...-
T Consensus        20 ~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          20 KNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999998764

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.34  E-value=0.003  Score=44.38  Aligned_cols=106  Identities=17%  Similarity=0.184  Sum_probs=60.4

Q ss_pred             EEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEeCC
Q 027949           19 LLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT   98 (216)
Q Consensus        19 ~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~   98 (216)
                      ..-|..|+|||++--.+...-.. ......-.+..   .......+.+.++|+|+..  .......+..+|.++++.+.+
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~~-~~~~~~~vd~D---~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~   77 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALAK-LGKRVLLLDAD---LGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE   77 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEECC---CCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence            35578899999997665432100 00000001100   0001111678999999753  333456778899999999876


Q ss_pred             CHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 027949           99 DESSFNNIRNWIRNIEQHASDNVNKILVGNKADM  132 (216)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  132 (216)
                       ..++......+..+.... ...++.+|+|+.+-
T Consensus        78 -~~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~  109 (139)
T cd02038          78 -PTSITDAYALIKKLAKQL-RVLNFRVVVNRAES  109 (139)
T ss_pred             -hhHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCC
Confidence             344455445555554432 24577899999873

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.34  E-value=0.0021  Score=54.96  Aligned_cols=22  Identities=36%  Similarity=0.516  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      =+++.|++|+||||.++.|...
T Consensus        47 iLlLtGP~G~GKtttv~~La~e   68 (519)
T PF03215_consen   47 ILLLTGPSGCGKTTTVKVLAKE   68 (519)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4577999999999999998764

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=97.30  E-value=0.00077  Score=50.12  Aligned_cols=23  Identities=26%  Similarity=0.379  Sum_probs=20.1

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHc
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~   37 (216)
                      .+-++|+|+.||||||+.+.+..
T Consensus         3 ~ya~lV~GpAgSGKSTyC~~~~~   25 (273)
T KOG1534|consen    3 RYAQLVMGPAGSGKSTYCSSMYE   25 (273)
T ss_pred             ceeEEEEccCCCCcchHHHHHHH
Confidence            36789999999999999998865

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.27  E-value=0.00022  Score=54.34  Aligned_cols=23  Identities=35%  Similarity=0.446  Sum_probs=20.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCC
Q 027949           18 LLLIGDSGVGKSCLLLRFSDGSF   40 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~~~   40 (216)
                      |+++|++|||||||++.+.+-..
T Consensus        32 vsilGpSGcGKSTLLriiAGL~~   54 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAGLEK   54 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            68999999999999999988553

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.26  E-value=0.0015  Score=43.64  Aligned_cols=100  Identities=15%  Similarity=0.123  Sum_probs=56.4

Q ss_pred             EcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCH
Q 027949           21 IGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE  100 (216)
Q Consensus        21 ~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~  100 (216)
                      =+..|+||||+...|...-.........-.+....   ..   ..+.++|+|+...  ......+..+|.++++++.+ .
T Consensus         6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~---~~---~D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~-~   76 (106)
T cd03111           6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ---FG---DDYVVVDLGRSLD--EVSLAALDQADRVFLVTQQD-L   76 (106)
T ss_pred             CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC---CC---CCEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCC-h
Confidence            45678999998877643221110111111111111   01   1678999998643  23344667889999888765 4


Q ss_pred             hHHHHHHHHHHHHHHhcCC-CCcEEEEEeC
Q 027949          101 SSFNNIRNWIRNIEQHASD-NVNKILVGNK  129 (216)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK  129 (216)
                      .+...+..++..+.+.... ...+.+|+|+
T Consensus        77 ~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          77 PSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            4566666666666654432 3466677775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.22  E-value=0.00034  Score=42.90  Aligned_cols=21  Identities=29%  Similarity=0.569  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027949           18 LLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~   38 (216)
                      |++.|++|+||||+.+.|...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            688999999999999999865

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.22  E-value=0.00036  Score=52.86  Aligned_cols=24  Identities=33%  Similarity=0.369  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSF   40 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~   40 (216)
                      -|+|+|++|||||||++.+.+-..
T Consensus        33 ~vaI~GpSGSGKSTLLniig~ld~   56 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGLDK   56 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhcccC
Confidence            478999999999999999987553

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.22  E-value=0.00024  Score=51.38  Aligned_cols=22  Identities=18%  Similarity=0.501  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      ||+|+|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999865

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.21  E-value=0.00028  Score=49.27  Aligned_cols=23  Identities=30%  Similarity=0.440  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|+|||||++.+.+..
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEEccCCCccccceeeecccc
Confidence            57999999999999999998764

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>KOG3929 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.15  E-value=0.0011  Score=50.72  Aligned_cols=141  Identities=18%  Similarity=0.301  Sum_probs=81.0

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECC-eEEEEEEEeCCCcccccccc-----cccccc
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG-KRIKLQIWDTAGQERFRTIT-----TAYYRG   87 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~-----~~~~~~   87 (216)
                      ....|++.|+.+  +||+|++.....-. ...++...++.+..-...+ ..--.++|+.+|......+.     ..-++ 
T Consensus        44 ~E~~I~~~Gn~~--~tt~I~~~FdR~e~-~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~-  119 (363)
T KOG3929|consen   44 FEFFIGSKGNGG--KTTIILRCFDRDEP-PKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLR-  119 (363)
T ss_pred             ceeEEEEecCCc--eeEeehhhcCcccC-CCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchh-
Confidence            447789999765  49999998876533 2445556666555543333 22345789999865433221     11112 


Q ss_pred             ccEEEEEEeCCCHhH-HHHHHHHHHHHH--------------------------Hh-----------cCCCCcEEEEEeC
Q 027949           88 AMGILLVYDVTDESS-FNNIRNWIRNIE--------------------------QH-----------ASDNVNKILVGNK  129 (216)
Q Consensus        88 ~d~~i~v~d~~~~~~-~~~~~~~~~~~~--------------------------~~-----------~~~~~p~ivv~nK  129 (216)
                      .-.+|++.|+++++. |..++..++.+.                          ..           .+...|+++|+.|
T Consensus       120 ~~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgsK  199 (363)
T KOG3929|consen  120 TFSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGSK  199 (363)
T ss_pred             hhhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEeccc
Confidence            234889999999754 233333322222                          10           1125899999999


Q ss_pred             CCCCCCCCccChHH-------HHHHHHHhCCeEEEEecC
Q 027949          130 ADMDESKRAVPTSK-------GQALADEYGIKFFETSAK  161 (216)
Q Consensus       130 ~Dl~~~~~~~~~~~-------~~~~~~~~~~~~~~~Sa~  161 (216)
                      .|....   ...+.       ++.++..+|..+...|++
T Consensus       200 YDvFq~---FesekRkH~C~~LRf~Ah~yGaaLlmfSsk  235 (363)
T KOG3929|consen  200 YDVFQD---FESEKRKHICKTLRFVAHYYGAALLMFSSK  235 (363)
T ss_pred             hhhhcc---ccHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence            997532   33333       344445566666666654

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.13  E-value=0.0019  Score=47.12  Aligned_cols=44  Identities=27%  Similarity=0.178  Sum_probs=27.3

Q ss_pred             cEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949           89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE  134 (216)
Q Consensus        89 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (216)
                      |++++|+|+.++.+... ..+...+. ....+.|+++|+||+|+.+
T Consensus         1 DvVl~VvDar~p~~~~~-~~i~~~~~-l~~~~kp~IlVlNK~DL~~   44 (172)
T cd04178           1 DVILEVLDARDPLGCRC-PQVEEAVL-QAGGNKKLVLVLNKIDLVP   44 (172)
T ss_pred             CEEEEEEECCCCCCCCC-HHHHHHHH-hccCCCCEEEEEehhhcCC
Confidence            78999999987643211 11222211 1122589999999999854

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.13  E-value=0.00036  Score=51.68  Aligned_cols=24  Identities=17%  Similarity=0.279  Sum_probs=21.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .=|+|+|++|||||||+++|+...
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhcC
Confidence            448999999999999999998754

>PRK06217 hypothetical protein; Validated

Probab=97.12  E-value=0.00047  Score=50.89  Aligned_cols=23  Identities=22%  Similarity=0.475  Sum_probs=21.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .+|+|+|.+||||||+.++|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999999864

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.09  E-value=0.0042  Score=45.52  Aligned_cols=85  Identities=20%  Similarity=0.205  Sum_probs=57.7

Q ss_pred             EEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChH
Q 027949           63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTS  142 (216)
Q Consensus        63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~  142 (216)
                      .+.+.++|+|+...  ......+..+|.+++++..+.. +...+..++..+...   +.|+.+|+|+.|...    ....
T Consensus        92 ~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~-~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~----~~~~  161 (179)
T cd03110          92 GAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPS-GLHDLERAVELVRHF---GIPVGVVINKYDLND----EIAE  161 (179)
T ss_pred             CCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcc-cHHHHHHHHHHHHHc---CCCEEEEEeCCCCCc----chHH
Confidence            47889999996532  2234456789999999987733 555566666555543   567889999999532    2345


Q ss_pred             HHHHHHHHhCCeEEE
Q 027949          143 KGQALADEYGIKFFE  157 (216)
Q Consensus       143 ~~~~~~~~~~~~~~~  157 (216)
                      +.++++...+++++.
T Consensus       162 ~~~~~~~~~~~~vl~  176 (179)
T cd03110         162 EIEDYCEEEGIPILG  176 (179)
T ss_pred             HHHHHHHHcCCCeEE
Confidence            667778878877653

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=97.07  E-value=0.012  Score=42.90  Aligned_cols=84  Identities=13%  Similarity=-0.005  Sum_probs=49.5

Q ss_pred             EEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHH
Q 027949           65 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKG  144 (216)
Q Consensus        65 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~  144 (216)
                      .+.++|+|+....  .....+..+|.+|++++.+. .++..+..++..+....  .....+|+|+.+-..   ....+..
T Consensus        64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~---~~~~~~~  135 (179)
T cd02036          64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEALG--IKVVGVIVNRVRPDM---VEGGDMV  135 (179)
T ss_pred             CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHcC--CceEEEEEeCCcccc---cchhhHH
Confidence            6889999875332  23444678999999887764 34455555555554421  245678899998422   1222223


Q ss_pred             HHHHHHhCCeEE
Q 027949          145 QALADEYGIKFF  156 (216)
Q Consensus       145 ~~~~~~~~~~~~  156 (216)
                      ..+...++.+++
T Consensus       136 ~~~~~~~~~~v~  147 (179)
T cd02036         136 EDIEEILGVPLL  147 (179)
T ss_pred             HHHHHHhCCCEE
Confidence            444555566554

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.07  E-value=0.00051  Score=47.38  Aligned_cols=21  Identities=33%  Similarity=0.514  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027949           18 LLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~   38 (216)
                      |++.|++|+|||++++.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            689999999999999999865

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK03839 putative kinase; Provisional

Probab=97.07  E-value=0.00049  Score=50.59  Aligned_cols=22  Identities=23%  Similarity=0.450  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      +|+|+|++||||||+.+.|...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998764

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.06  E-value=0.0022  Score=47.97  Aligned_cols=22  Identities=36%  Similarity=0.472  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCC
Q 027949           18 LLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~~   39 (216)
                      |+|+|++||||||+++.+++..
T Consensus         4 ilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999987654

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK01889 GTPase RsgA; Reviewed

Probab=97.06  E-value=0.0006  Score=55.69  Aligned_cols=24  Identities=38%  Similarity=0.556  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSF   40 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~   40 (216)
                      +++|+|.+|+|||||++.|++...
T Consensus       197 ~~~lvG~sgvGKStLin~L~g~~~  220 (356)
T PRK01889        197 TVALLGSSGVGKSTLVNALLGEEV  220 (356)
T ss_pred             EEEEECCCCccHHHHHHHHHHhcc
Confidence            789999999999999999997543

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.06  E-value=0.00055  Score=49.90  Aligned_cols=24  Identities=33%  Similarity=0.393  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSF   40 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~   40 (216)
                      .++|+|++|+|||||+|-+.+=..
T Consensus        27 ~vAi~GpSGaGKSTLLnLIAGF~~   50 (231)
T COG3840          27 IVAILGPSGAGKSTLLNLIAGFET   50 (231)
T ss_pred             EEEEECCCCccHHHHHHHHHhccC
Confidence            579999999999999999987443

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.05  E-value=0.00052  Score=50.78  Aligned_cols=23  Identities=35%  Similarity=0.562  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .|+|+|++|||||||++.|.+..
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            58999999999999999997653

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.04  E-value=0.0036  Score=49.40  Aligned_cols=25  Identities=36%  Similarity=0.531  Sum_probs=22.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSF   40 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~   40 (216)
                      ..++++|++|-|||++++++.....
T Consensus        62 p~lLivG~snnGKT~Ii~rF~~~hp   86 (302)
T PF05621_consen   62 PNLLIVGDSNNGKTMIIERFRRLHP   86 (302)
T ss_pred             CceEEecCCCCcHHHHHHHHHHHCC
Confidence            5789999999999999999997553

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.03  E-value=0.00065  Score=46.92  Aligned_cols=26  Identities=23%  Similarity=0.332  Sum_probs=22.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFT   41 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~   41 (216)
                      -.++|+|++|+||||+++.+...-..
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCC
Confidence            36899999999999999999876544

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.02  E-value=0.00056  Score=50.17  Aligned_cols=22  Identities=32%  Similarity=0.434  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .++|+|++||||||+++.|...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4799999999999999998765

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.02  E-value=0.00055  Score=52.92  Aligned_cols=21  Identities=33%  Similarity=0.419  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027949           18 LLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~   38 (216)
                      ++++|+.|||||||++++.+-
T Consensus        31 ~~iiGpNG~GKSTLLk~l~g~   51 (258)
T COG1120          31 TGILGPNGSGKSTLLKCLAGL   51 (258)
T ss_pred             EEEECCCCCCHHHHHHHHhcc
Confidence            589999999999999999873

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.01  E-value=0.001  Score=50.03  Aligned_cols=27  Identities=30%  Similarity=0.519  Sum_probs=22.2

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCC
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      ....-|+|+|++|||||||++.|....
T Consensus        11 ~~~~~ivi~GpsG~GK~tl~~~L~~~~   37 (206)
T PRK14738         11 AKPLLVVISGPSGVGKDAVLARMRERK   37 (206)
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhcC
Confidence            344668899999999999999997643

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.01  E-value=0.00063  Score=47.77  Aligned_cols=21  Identities=52%  Similarity=0.775  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027949           18 LLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~   38 (216)
                      |+|+|++|+|||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999865

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.01  E-value=0.0007  Score=54.40  Aligned_cols=23  Identities=39%  Similarity=0.505  Sum_probs=20.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCC
Q 027949           18 LLLIGDSGVGKSCLLLRFSDGSF   40 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~~~   40 (216)
                      ++++|++|||||||++.+.+-+-
T Consensus        32 ~vllGPSGcGKSTlLr~IAGLe~   54 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGLEE   54 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            68999999999999999998553

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.01  E-value=0.0022  Score=44.60  Aligned_cols=23  Identities=39%  Similarity=0.598  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      -|++.|+.|+|||||++.+...-
T Consensus        24 ~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        24 VVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58999999999999999998753

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.01  E-value=0.00067  Score=49.72  Aligned_cols=21  Identities=33%  Similarity=0.393  Sum_probs=19.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHH
Q 027949           16 IKLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~   36 (216)
                      -.++|+|++|+|||||++.++
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            367999999999999999886

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR00235 udk uridine kinase

Probab=97.00  E-value=0.00091  Score=50.35  Aligned_cols=24  Identities=25%  Similarity=0.299  Sum_probs=21.3

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcC
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      ..-|+|+|++|||||||++.|.+.
T Consensus         6 g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         6 GIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHH
Confidence            367899999999999999999864

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.99  E-value=0.00066  Score=45.29  Aligned_cols=20  Identities=45%  Similarity=0.763  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 027949           17 KLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~   36 (216)
                      .++++|++|+|||||++.+.
T Consensus        17 ~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          17 GVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEcCCCCCHHHHHHHhh
Confidence            57999999999999999986

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=96.98  E-value=0.00069  Score=47.74  Aligned_cols=22  Identities=18%  Similarity=0.433  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .|+|+|+.|+|||||++.|++.
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999865

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=96.98  E-value=0.00092  Score=48.70  Aligned_cols=24  Identities=29%  Similarity=0.368  Sum_probs=21.1

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcC
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      ..-+.|+|.+|||||||++++...
T Consensus         6 ~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          6 IPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             ceEEEEECCCCChHHHHHHHHHHH
Confidence            356899999999999999999865

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=96.97  E-value=0.00065  Score=46.63  Aligned_cols=21  Identities=19%  Similarity=0.378  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027949           18 LLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~   38 (216)
                      |+|.|.+||||||+.+.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999765

...

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=96.96  E-value=0.00029  Score=57.00  Aligned_cols=58  Identities=21%  Similarity=0.213  Sum_probs=0.0

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCC
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG   73 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   73 (216)
                      ....+-|.++|.|++||||+||+|....+. ...|..+.......++.-.   .+-++|+||
T Consensus       304 dkkqISVGfiGYPNvGKSSiINTLR~KkVC-kvAPIpGETKVWQYItLmk---rIfLIDcPG  361 (572)
T KOG2423|consen  304 DKKQISVGFIGYPNVGKSSIINTLRKKKVC-KVAPIPGETKVWQYITLMK---RIFLIDCPG  361 (572)
T ss_pred             CccceeeeeecCCCCchHHHHHHHhhcccc-cccCCCCcchHHHHHHHHh---ceeEecCCC

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=96.95  E-value=0.0007  Score=52.14  Aligned_cols=21  Identities=43%  Similarity=0.520  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~   37 (216)
                      -+.|+|+.|+|||||++.+++
T Consensus        32 ~~~iiGPNGaGKSTLlK~iLG   52 (254)
T COG1121          32 ITALIGPNGAGKSTLLKAILG   52 (254)
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            468999999999999999998

>PRK14530 adenylate kinase; Provisional

Probab=96.94  E-value=0.00077  Score=51.06  Aligned_cols=22  Identities=27%  Similarity=0.563  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      .+|+|+|+|||||||+.+.|..
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999864

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.93  E-value=0.0008  Score=50.99  Aligned_cols=23  Identities=35%  Similarity=0.430  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|+|||||++.+.+..
T Consensus        32 ~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Confidence            57999999999999999999764

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR03263 guanyl_kin guanylate kinase

Probab=96.91  E-value=0.00081  Score=49.32  Aligned_cols=23  Identities=35%  Similarity=0.559  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      -|+|+|++||||||+++.|....
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHccC
Confidence            47999999999999999998753

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.90  E-value=0.0009  Score=50.44  Aligned_cols=23  Identities=35%  Similarity=0.470  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|+|||||++.+.+..
T Consensus        29 ~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          29 FVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47999999999999999999754

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=96.90  E-value=0.00089  Score=50.68  Aligned_cols=23  Identities=35%  Similarity=0.483  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|+|||||++.+.+..
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        31 MVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999999854

>PRK13949 shikimate kinase; Provisional

Probab=96.89  E-value=0.00093  Score=48.66  Aligned_cols=22  Identities=27%  Similarity=0.507  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      +|+|+|++||||||+.+.|...
T Consensus         3 ~I~liG~~GsGKstl~~~La~~   24 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARE   24 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999988753

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.89  E-value=0.00094  Score=49.42  Aligned_cols=24  Identities=29%  Similarity=0.391  Sum_probs=21.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      -.++|+|++|+|||||++.+++.-
T Consensus        26 ~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          26 KNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhc
Confidence            468999999999999999998653

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=96.88  E-value=0.00085  Score=50.10  Aligned_cols=21  Identities=24%  Similarity=0.395  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027949           18 LLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~   38 (216)
                      |.|.|++|||||||.+.|.+.
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999999765

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.88  E-value=0.00087  Score=50.76  Aligned_cols=21  Identities=43%  Similarity=0.649  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~   37 (216)
                      .|+++|++|+|||||++.+.+
T Consensus        32 ~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          32 MVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            479999999999999999987

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.88  E-value=0.00095  Score=50.13  Aligned_cols=23  Identities=26%  Similarity=0.345  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          28 IIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999999754

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.87  E-value=0.00096  Score=51.21  Aligned_cols=23  Identities=43%  Similarity=0.434  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|+|||||++.+.+..
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          28 ILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47999999999999999999754

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=96.86  E-value=0.001  Score=49.32  Aligned_cols=23  Identities=43%  Similarity=0.615  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|+|||||++.+.+..
T Consensus        20 ~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        20 VLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999998754

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=96.86  E-value=0.001  Score=50.26  Aligned_cols=23  Identities=39%  Similarity=0.531  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|+|||||++.+.+..
T Consensus        29 ~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          29 FVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999999753

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=96.86  E-value=0.001  Score=50.27  Aligned_cols=23  Identities=39%  Similarity=0.494  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|+|||||++.+.+..
T Consensus        30 ~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        30 FLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999998753

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=96.85  E-value=0.00094  Score=49.22  Aligned_cols=22  Identities=18%  Similarity=0.431  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ..|+|+|++||||||+.+.|..
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999974

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.85  E-value=0.0009  Score=50.01  Aligned_cols=22  Identities=45%  Similarity=0.536  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCC
Q 027949           18 LLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .+++|++|||||||++.|-.-.
T Consensus        36 TAlIGPSGcGKST~LR~lNRmn   57 (253)
T COG1117          36 TALIGPSGCGKSTLLRCLNRMN   57 (253)
T ss_pred             EEEECCCCcCHHHHHHHHHhhc
Confidence            5899999999999999986543

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=96.85  E-value=0.0011  Score=49.84  Aligned_cols=23  Identities=39%  Similarity=0.416  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|+|||||++.+.+..
T Consensus        26 ~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        26 MYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999999754

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=96.85  E-value=0.0011  Score=50.05  Aligned_cols=23  Identities=22%  Similarity=0.247  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          28 IFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999864

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=96.84  E-value=0.00041  Score=60.73  Aligned_cols=69  Identities=13%  Similarity=0.152  Sum_probs=44.7

Q ss_pred             EEEEEEeCCCcc-------------ccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 027949           64 IKLQIWDTAGQE-------------RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA  130 (216)
Q Consensus        64 ~~~~i~D~~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  130 (216)
                      ..++++|+||..             ....+...++..-+.+|+.+...+-+  .....++....+..+.+...+-|++|.
T Consensus       132 ~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d--~ats~alkiarevDp~g~RTigvitK~  209 (657)
T KOG0446|consen  132 ANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSD--IATSPALVVAREVDPGGSRTLEVITKF  209 (657)
T ss_pred             chhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhh--hhcCHHHHHHHhhCCCccchhHHhhhH
Confidence            467788999832             24456677777778888877765421  122235556666666677778888888


Q ss_pred             CCCC
Q 027949          131 DMDE  134 (216)
Q Consensus       131 Dl~~  134 (216)
                      |+.+
T Consensus       210 Dlmd  213 (657)
T KOG0446|consen  210 DFMD  213 (657)
T ss_pred             Hhhh
Confidence            8754

>PRK14531 adenylate kinase; Provisional

Probab=96.84  E-value=0.0011  Score=48.99  Aligned_cols=23  Identities=30%  Similarity=0.570  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .+|+++|+|||||||+.+.|...
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~   25 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAA   25 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999998653

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=96.84  E-value=0.0011  Score=50.43  Aligned_cols=23  Identities=22%  Similarity=0.310  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265          28 IFGLLGPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47999999999999999999753

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=96.84  E-value=0.0011  Score=50.16  Aligned_cols=23  Identities=39%  Similarity=0.485  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259          28 FLALLGPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47999999999999999999753

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	216
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		3e-59
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		3e-59
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		3e-52
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		4e-52
4fmc_B	171	Espg-Rab1 Complex Length = 171		4e-52
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		6e-52
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		1e-51
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		1e-51
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		2e-51
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		2e-51
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		3e-51
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		5e-51
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		6e-51
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		6e-50
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		7e-50
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		8e-50
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		6e-48
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		8e-48
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		4e-45
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		4e-45
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		1e-44
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		6e-43
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		8e-42
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		2e-41
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		4e-41
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		9e-41
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		1e-40
4fmc_F	117	Espg-Rab1 Complex Length = 117		5e-40
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		6e-39
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		2e-38
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		2e-37
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		2e-37
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		2e-37
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		6e-37
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		1e-36
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		1e-36
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		1e-36
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		3e-36
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		3e-36
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		2e-35
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		3e-35
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		4e-35
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		1e-34
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		1e-34
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		5e-34
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		6e-34
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		6e-34
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		8e-34
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		9e-34
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		1e-33
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		1e-33
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		2e-33
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		2e-33
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		3e-33
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		4e-33
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		5e-33
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		6e-33
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		9e-33
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		2e-32
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		5e-32
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		2e-31
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		3e-31
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		3e-31
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		4e-31
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		4e-31
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		7e-31
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		1e-30
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		1e-30
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		2e-30
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		5e-30
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		5e-30
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		6e-30
2efc_B	181	Ara7-GdpATVPS9A Length = 181		1e-29
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		2e-29
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		2e-28
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		2e-28
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		4e-28
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		7e-28
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		7e-28
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		8e-28
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		2e-27
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		5e-27
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		2e-26
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		6e-25
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		7e-25
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		1e-24
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		3e-24
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		3e-24
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		6e-24
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		6e-24
1vg1_A	185	Gdp-bound Rab7 Length = 185		7e-24
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		1e-23
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		1e-23
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		1e-23
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		2e-23
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		4e-23
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		5e-23
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		5e-23
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		8e-23
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		3e-22
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		3e-22
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		4e-22
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		1e-21
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		1e-21
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		1e-21
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		2e-21
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		3e-21
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		3e-21
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-21
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		6e-21
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-20
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		1e-20
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		1e-20
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		5e-20
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		8e-20
4q21_A	189	Molecular Switch For Signal Transduction: Structura		2e-19
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		2e-19
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		2e-19
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		3e-19
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		5e-19
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		5e-19
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		5e-19
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		5e-19
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		5e-19
1wq1_R	166	Ras-Rasgap Complex Length = 166		5e-19
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		5e-19
6q21_A	171	Molecular Switch For Signal Transduction: Structura		5e-19
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		5e-19
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		5e-19
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		5e-19
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		5e-19
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		6e-19
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		6e-19
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		6e-19
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		6e-19
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		9e-19
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		1e-18
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		1e-18
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		1e-18
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		1e-18
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-18
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		2e-18
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		2e-18
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-18
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		2e-18
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-18
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-18
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		2e-18
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		4e-18
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		4e-18
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		4e-18
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		4e-18
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		5e-18
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		5e-18
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		6e-18
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		6e-18
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		9e-18
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		1e-17
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		1e-17
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		1e-17
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		1e-17
1byu_A	216	Canine Gdp-Ran Length = 216		1e-17
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		2e-17
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		2e-17
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		2e-17
2bku_A	177	Kap95p:rangtp Complex Length = 177		2e-17
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		2e-17
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		3e-17
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		4e-17
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		5e-17
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		9e-17
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		1e-16
3icq_B	171	Karyopherin Nuclear State Length = 171		2e-16
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		2e-16
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		2e-16
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		2e-16
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		2e-16
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		9e-16
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		9e-16
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		9e-16
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		9e-16
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		1e-15
1s1c_A	183	Crystal Structure Of The Complex Between The Human		1e-15
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		1e-15
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		1e-15
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		1e-15
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		1e-15
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		1e-15
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		1e-15
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		1e-15
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		1e-15
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		1e-15
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		1e-15
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		1e-15
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		2e-15
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		2e-15
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		2e-15
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		5e-15
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		7e-15
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		8e-15
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		2e-14
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		3e-14
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		3e-14
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		3e-14
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		4e-14
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		4e-14
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		4e-14
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		4e-14
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		4e-14
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		4e-14
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		5e-14
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		5e-14
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		5e-14
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		5e-14
1mh1_A	186	Small G-Protein Length = 186		6e-14
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		6e-14
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		6e-14
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		6e-14
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		7e-14
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		7e-14
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		7e-14
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		2e-13
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		2e-13
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		3e-13
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		3e-13
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		3e-13
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		3e-13
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		3e-13
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		3e-13
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		3e-13
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		3e-13
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		4e-13
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		4e-13
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		4e-13
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		6e-13
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		8e-13
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		8e-13
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		9e-13
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		2e-12
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		2e-12
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		3e-12
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		4e-12
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		7e-12
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		1e-11
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		2e-11
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		2e-11
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		3e-11
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		4e-11
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		5e-11
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		6e-11
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		6e-11
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		7e-11
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		7e-11
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		1e-10
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		1e-10
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		1e-10
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		1e-10
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		1e-10
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		1e-10
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		1e-10
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		1e-10
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		1e-10
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		1e-10
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		1e-10
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		1e-10
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		1e-10
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		1e-10
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		1e-10
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		1e-10
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		1e-10
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		2e-10
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		2e-10
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		2e-10
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		2e-10
2kb0_A	178	Cdc42(T35a) Length = 178		2e-10
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		2e-10
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		6e-10
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		1e-09
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		1e-09
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		4e-09
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		1e-08
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		2e-08
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		1e-07
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		1e-07
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		1e-07
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		1e-07
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		7e-07
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		2e-06
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		2e-06
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		3e-06
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		1e-05
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		1e-05
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		2e-05
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		4e-05
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		5e-05
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		6e-05
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		6e-05
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		9e-05
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		1e-04
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		2e-04
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		3e-04
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		4e-04
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		4e-04
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		4e-04
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		4e-04
1r4a_A	165	Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac		6e-04
3ihw_A	184	Crystal Structure Of The Ras-Like Domain Of Centg3		7e-04

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  224 bits (571), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 109/167 (65%), Positives = 131/167 (78%), Gaps = 1/167 (0%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L KLLLIGDSGVGK+C+L R                  KIRTIELDGKRIKLQIWDTAGQ
Sbjct: 8   LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 67
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK D+++
Sbjct: 68  ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND 127
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 181
            KR V   +G+ LA +YGIKF ETSAK N+NVE  FF++ARDIK ++
Sbjct: 128 -KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 173

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  224 bits (571), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 109/167 (65%), Positives = 131/167 (78%), Gaps = 1/167 (0%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L KLLLIGDSGVGK+C+L R                  KIRTIELDGKRIKLQIWDTAGQ
Sbjct: 6   LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 65
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK D+++
Sbjct: 66  ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND 125
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 181
            KR V   +G+ LA +YGIKF ETSAK N+NVE  FF++ARDIK ++
Sbjct: 126 -KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 171

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  201 bits (511), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 102/182 (56%), Positives = 128/182 (70%), Gaps = 3/182 (1%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQ
Sbjct: 16  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+  
Sbjct: 76  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-T 134
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDSRAEPQT 192
           +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R+    T   AE   
Sbjct: 135 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSN 194
Query: 193 IK 194
           +K
Sbjct: 195 VK 196

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  200 bits (509), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 98/167 (58%), Positives = 123/167 (73%), Gaps = 1/167 (0%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQ
Sbjct: 6   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+  
Sbjct: 66  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-T 124
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 181
           +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R+
Sbjct: 125 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  200 bits (509), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 98/167 (58%), Positives = 123/167 (73%), Gaps = 1/167 (0%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQ
Sbjct: 6   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+  
Sbjct: 66  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-T 124
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 181
           +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R+
Sbjct: 125 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  200 bits (508), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 98/168 (58%), Positives = 123/168 (73%), Gaps = 1/168 (0%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQ
Sbjct: 25  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 84
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+  
Sbjct: 85  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-T 143
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA 182
           +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R+ 
Sbjct: 144 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 191

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  199 bits (505), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 97/167 (58%), Positives = 123/167 (73%), Gaps = 1/167 (0%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L KLLLIGDSGVGK+CLLLR                  KIRTIELDGK IKLQIWDTAGQ
Sbjct: 16  LFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+  
Sbjct: 76  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-T 134
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 181
           +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R+
Sbjct: 135 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 181

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  199 bits (505), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 97/165 (58%), Positives = 122/165 (73%), Gaps = 1/165 (0%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQER
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK 136
           FRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+  +K
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTK 119
Query: 137 RAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 181
           + V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R+
Sbjct: 120 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 164

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  198 bits (503), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 96/168 (57%), Positives = 123/168 (73%), Gaps = 1/168 (0%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQ
Sbjct: 9   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ERFRTIT++YYRGA GI++VYDVTD+ S+ N++ W++ I+++AS+NVNK+LVGNK+D+  
Sbjct: 69  ERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL-T 127
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA 182
           +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R+ 
Sbjct: 128 TKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMG 175

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  198 bits (503), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 96/168 (57%), Positives = 123/168 (73%), Gaps = 1/168 (0%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQ
Sbjct: 9   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ERFRTIT++YYRGA GI++VYDVTD+ S+ N++ W++ I+++AS+NVNK+LVGNK+D+  
Sbjct: 69  ERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL-T 127
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA 182
           +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R+ 
Sbjct: 128 TKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMG 175

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  197 bits (502), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 98/167 (58%), Positives = 124/167 (74%), Gaps = 1/167 (0%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L KLLLIGDSGVGKSCLLLR                  KIRTI L+ K +KLQIWDTAGQ
Sbjct: 9   LFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQ 68
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ERFRTIT++YYRGA GI++VYDVTD  SF+N++ WI+ I+++A +NVNK+LVGNK D+  
Sbjct: 69  ERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDL-V 127
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 181
           SKR V + +G+ LAD +GIKF ETSAK   NVE+ F ++A +IK+R+
Sbjct: 128 SKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRV 174

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  197 bits (500), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 98/166 (59%), Positives = 121/166 (72%), Gaps = 1/166 (0%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQ
Sbjct: 33  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 92
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+  
Sbjct: 93  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-T 151
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           +K+ V  +  +  AD  GI F ETSAK   NVE+ F + A +IK+R
Sbjct: 152 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEIKKR 197

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  196 bits (499), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 97/168 (57%), Positives = 122/168 (72%), Gaps = 1/168 (0%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQ
Sbjct: 8   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVG K D+  
Sbjct: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDL-T 126
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA 182
           +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R+ 
Sbjct: 127 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 174

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  193 bits (491), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 90/167 (53%), Positives = 124/167 (74%), Gaps = 2/167 (1%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           ++K+LLIGDSGVGKSCLL+R                  KI+T++++GK++KLQIWDTAGQ
Sbjct: 3   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 62
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ERFRTITTAYYRGAMGI+LVYD+TDE +F NI+ W + + +HA+D    +LVGNK+DM+ 
Sbjct: 63  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME- 121
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 181
             R V   +G+ALA E GI F E+SAK + NV E+FF++A+ I++++
Sbjct: 122 -TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  193 bits (490), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 90/167 (53%), Positives = 124/167 (74%), Gaps = 2/167 (1%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           ++K+LLIGDSGVGKSCLL+R                  KI+T++++GK++KLQ+WDTAGQ
Sbjct: 20  IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 79
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ERFRTITTAYYRGAMGI+LVYDVTDE +F NI+ W + + +HA+D    +LVGNK+DM+ 
Sbjct: 80  ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME- 138
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 181
             R V   +G+ALA E GI F E+SAK + NV E+FF++A+ I++++
Sbjct: 139 -TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 184

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  192 bits (489), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 90/167 (53%), Positives = 124/167 (74%), Gaps = 2/167 (1%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           ++K+LLIGDSGVGKSCLL+R                  KI+T++++GK++KLQ+WDTAGQ
Sbjct: 7   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ERFRTITTAYYRGAMGI+LVYDVTDE +F NI+ W + + +HA+D    +LVGNK+DM+ 
Sbjct: 67  ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME- 125
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 181
             R V   +G+ALA E GI F E+SAK + NV E+FF++A+ I++++
Sbjct: 126 -TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 171

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  186 bits (473), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 88/167 (52%), Positives = 121/167 (72%), Gaps = 2/167 (1%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           + K+LLIGDSGVGKSCLL+R                  KI+T++++GK++KLQIWDTAGQ
Sbjct: 3   IXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 62
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ERFRTITTAYYRGA GI+LVYD+TDE +F NI+ W + + +HA+D    +LVGNK+D + 
Sbjct: 63  ERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXE- 121
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 181
             R V   +G+ALA E GI F E+SAK + NV E+FF++A+ I++++
Sbjct: 122 -TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  186 bits (472), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 88/167 (52%), Positives = 121/167 (72%), Gaps = 2/167 (1%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           + K+LLIGDSGVGKSCLL+R                  KI+T++++GK++KLQ+WDTAGQ
Sbjct: 3   IXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 62
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ERFRTITTAYYRGA GI+LVYDVTDE +F NI+ W + + +HA+D    +LVGNK+D + 
Sbjct: 63  ERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXE- 121
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 181
             R V   +G+ALA E GI F E+SAK + NV E+FF++A+ I++++
Sbjct: 122 -TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  177 bits (449), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 87/168 (51%), Positives = 117/168 (69%), Gaps = 1/168 (0%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L KLLLIG+SGVGKSCLLLR                  KI+T+ELDGK +KLQIWDTAGQ
Sbjct: 8   LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ERFRTIT++YYRG+ GI++VYDVTD+ SFN ++ W++ I+++A+  V K+LVGNK D+ +
Sbjct: 68  ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL-K 126
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA 182
            KR V     +  AD   + F ETSA  + NVE+ F ++AR IK+ ++
Sbjct: 127 DKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMS 174

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  177 bits (449), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 87/168 (51%), Positives = 117/168 (69%), Gaps = 1/168 (0%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L KLLLIG+SGVGKSCLLLR                  KI+T+ELDGK +KLQIWDTAGQ
Sbjct: 8   LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ERFRTIT++YYRG+ GI++VYDVTD+ SFN ++ W++ I+++A+  V K+LVGNK D+ +
Sbjct: 68  ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL-K 126
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA 182
            KR V     +  AD   + F ETSA  + NVE+ F ++AR IK+ ++
Sbjct: 127 DKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMS 174

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  176 bits (445), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 87/165 (52%), Positives = 115/165 (69%), Gaps = 1/165 (0%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L KLLLIG+SGVGKSCLLLR                  KI+T+ELDGK +KLQIWDTAGQ
Sbjct: 21  LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 80
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ERFRTIT++YYRG+ GI++VYDVTD+ SFN ++ W++ I+++A+  V K+LVGNK D+ +
Sbjct: 81  ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL-K 139
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 179
            KR V     +  AD   + F ETSA  + NVE+ F ++AR IK+
Sbjct: 140 DKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKE 184

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  170 bits (430), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 82/170 (48%), Positives = 113/170 (66%), Gaps = 1/170 (0%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           + KLL+IG+S VGK+  L R                  K++T+    KR+KLQIWDTAGQ
Sbjct: 23  MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ 82
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   ILVGNK DM+E
Sbjct: 83  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE 142
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADT 184
            +R VPT KGQ LA++ G  FFE SAK N++V + F  +   I  +++D+
Sbjct: 143 -ERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDS 191

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  166 bits (420), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 81/167 (48%), Positives = 114/167 (68%), Gaps = 1/167 (0%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L K ++IGD+GVGKSCLLL+                    R + +DGK+IKLQIWDTAGQ
Sbjct: 21  LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ 80
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           E FR+IT +YYRGA G LLVYD+T   +FN++ +W+ +  QH+S N+  +L+GNK+D+ E
Sbjct: 81  ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDL-E 139
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 181
           S+R V   +G+A A E+G+ F ETSAKT  NVEE F + A++I +++
Sbjct: 140 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKI 186

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  165 bits (417), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 81/166 (48%), Positives = 112/166 (67%), Gaps = 1/166 (0%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L K ++IGD+GVGKSCLLL+                    R I +DGK+IKLQIWDTAGQ
Sbjct: 10  LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ 69
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           E FR+IT +YYRGA G LLVYD+T   +FN++  W+ +  QH++ N+  +L+GNK+D+ E
Sbjct: 70  ESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDL-E 128
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           S+R V   +G+A A E+G+ F ETSAKT  NVEE F + A++I ++
Sbjct: 129 SRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEK 174

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  164 bits (414), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 83/156 (53%), Positives = 106/156 (67%), Gaps = 2/156 (1%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L KLL+IGDSGVGKS LLLR                  KIRT+E++G+++KLQIWDTAGQ
Sbjct: 9   LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQ 68
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ERFRTIT+ YYRG  G+++VYDVT   SF N++ W+  I Q+  D+V +ILVGNK D D 
Sbjct: 69  ERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKND-DP 126
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170
            ++ V T      A + GI+ FETSAK N+NVEE+F
Sbjct: 127 ERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 162

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  163 bits (412), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 78/156 (50%), Positives = 106/156 (67%), Gaps = 1/156 (0%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           + K+L+IG+S VGK+  L R                  K++TI  + KRIKLQIWDTAGQ
Sbjct: 5   MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQ 64
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   +LVGNK DM E
Sbjct: 65  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM-E 123
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170
            +R V + +G+ LAD  G +FFE SAK N+NV++ F
Sbjct: 124 DERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF 159

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  162 bits (410), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 79/156 (50%), Positives = 104/156 (66%), Gaps = 1/156 (0%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           + KLLLIG+S VGK+  L R                  K++T+    KRIKLQIWDTAGQ
Sbjct: 22  MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQ 81
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ER+RTITTAYYRGAMG LL+YD+ ++ SF  +++W   I+ ++ DN   ILVGNK D+ E
Sbjct: 82  ERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDL-E 140
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170
            +R VP   G+ LAD+ G +FFE SAK N+NV++VF
Sbjct: 141 DERVVPAEDGRRLADDLGFEFFEASAKENINVKQVF 176

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score =  160 bits (405), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 76/115 (66%), Positives = 91/115 (79%)
Query: 18  LLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERF 77
           LLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERF
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 78  RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADM 132
           RTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  156 bits (395), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 76/166 (45%), Positives = 113/166 (68%), Gaps = 2/166 (1%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXX-XKIRTIELDGKRIKLQIWDTAGQ 74
            K++L+GDSGVGK+CLL+R                   + + +++DG ++KLQ+WDTAGQ
Sbjct: 11  FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ERFR++T AYYR A  +LL+YDVT+++SF+NI+ W+  I ++A  +V  +L+GNK D   
Sbjct: 71  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVD-SA 129
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
            +R V    G+ LA EYG+ F ETSAKT LNV+  F +IA+++K+R
Sbjct: 130 HERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRR 175

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  155 bits (392), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 78/175 (44%), Positives = 111/175 (63%), Gaps = 1/175 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            K+L+IG+S VGK+  L R                  K++TI  + KRIKLQIWDTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           R+RTITTAYYRGA G +L YD+T+E SFN +++W   I+ ++ DN   +LVGNK D  E 
Sbjct: 69  RYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDX-ED 127
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEP 190
           +R V + +G+ LAD  G +FFE SAK N+NV++ F  +   I ++ +++   A+P
Sbjct: 128 ERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKXSESLDTADP 182

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  152 bits (383), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 77/163 (47%), Positives = 104/163 (63%), Gaps = 1/163 (0%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAGQ
Sbjct: 29  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 88
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+  
Sbjct: 89  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-R 147
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
             RAVPT + +A A++ G+ F ETSA  + NVE  F +I  +I
Sbjct: 148 HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  152 bits (383), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 77/163 (47%), Positives = 104/163 (63%), Gaps = 1/163 (0%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAGQ
Sbjct: 20  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 79
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+  
Sbjct: 80  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-R 138
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
             RAVPT + +A A++ G+ F ETSA  + NVE  F +I  +I
Sbjct: 139 HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 181

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  151 bits (382), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 77/163 (47%), Positives = 104/163 (63%), Gaps = 1/163 (0%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAGQ
Sbjct: 5   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 64
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+  
Sbjct: 65  ERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-R 123
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
             RAVPT + +A A++  + F ETSA  + NVEE F +I  +I
Sbjct: 124 HLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 166

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  150 bits (379), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 77/168 (45%), Positives = 107/168 (63%), Gaps = 1/168 (0%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L K++LIGDSGVGKS LL R                    RT+E++GKRIK QIWDTAGQ
Sbjct: 13  LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQ 72
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ER+R IT+AYYRGA+G L+VYD++  SS+ N  +W+  + ++A DNV   L+GNK+D+  
Sbjct: 73  ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAH 132
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA 182
             RAVPT + +  A E  + F ETSA  + NV++ F  +   I Q+++
Sbjct: 133 -LRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVS 179

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  149 bits (376), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 76/163 (46%), Positives = 103/163 (63%), Gaps = 1/163 (0%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAG 
Sbjct: 29  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 88
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+  
Sbjct: 89  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-R 147
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
             RAVPT + +A A++ G+ F ETSA  + NVE  F +I  +I
Sbjct: 148 HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  149 bits (375), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 76/163 (46%), Positives = 103/163 (63%), Gaps = 1/163 (0%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAG 
Sbjct: 8   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 67
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+  
Sbjct: 68  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-R 126
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
             RAVPT + +A A++ G+ F ETSA  + NVE  F +I  +I
Sbjct: 127 HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 169

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  149 bits (375), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/167 (44%), Positives = 109/167 (65%), Gaps = 2/167 (1%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L KL+L+GD+ VGK+C++ R                   ++T+E+ GKR+KLQIWDTAGQ
Sbjct: 29  LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 88
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ERFRTIT +YYR A G +L YD+T  SSF ++ +WI ++ ++A  N+ ++L+GNK+D+ E
Sbjct: 89  ERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE 148
Query: 135 SKRAVPTSKGQALADEYGIK-FFETSAKTNLNVEEVFFSIARDIKQR 180
             R V  ++ Q+LA+ Y I    ETSAK + NVEE F  +A ++  R
Sbjct: 149 -LREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMR 194

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 76/163 (46%), Positives = 102/163 (62%), Gaps = 1/163 (0%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAG 
Sbjct: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 70
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+   LVGNK+D+  
Sbjct: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDL-R 129
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
             RAVPT + +A A++ G+ F ETSA  + NVE  F +I  +I
Sbjct: 130 HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  147 bits (372), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 76/163 (46%), Positives = 102/163 (62%), Gaps = 1/163 (0%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAG 
Sbjct: 5   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 64
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+   LVGNK+D+  
Sbjct: 65  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDL-R 123
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
             RAVPT + +A A++ G+ F ETSA  + NVE  F +I  +I
Sbjct: 124 HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 166

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  145 bits (366), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/165 (44%), Positives = 102/165 (61%), Gaps = 1/165 (0%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           + K ++IGD GVGKSCLL +                    R IE+ G++IKLQIWDTAGQ
Sbjct: 15  IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ 74
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ERFR +T +YYRGA G L+VYD+T  S++N++ +W+ +     + N   IL+GNKAD+ E
Sbjct: 75  ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADL-E 133
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 179
           ++R V   + +  A+E G+ F E SAKT  NVE+ F   A+ I Q
Sbjct: 134 AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  144 bits (363), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 111/167 (66%), Gaps = 2/167 (1%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +++++IG  GVGK+ L+ R                  KI+T+EL GK+I+LQIWDTAGQE
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           RF +IT+AYYR A GI+LVYD+T + +F+++  W++ I+++AS++   +LVGNK D  E+
Sbjct: 87  RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC-ET 145
Query: 136 KRAVPTSKGQALADEY-GIKFFETSAKTNLNVEEVFFSIARDIKQRL 181
            R +   +G+  A +  G++F E SAK N NV+E+F  +  DI +++
Sbjct: 146 DREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  144 bits (362), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L K++LIG++GVGK+CL+ R                   I+T+E++G+++KLQIWDTAGQ
Sbjct: 26  LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ERFR+IT +YYR A  ++L YD+T E SF  +  W+R IEQ+AS+ V  +LVGNK D+ E
Sbjct: 86  ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE 145
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA 174
            +R V   + +  ++   + + ETSAK + NVE++F  +A
Sbjct: 146 -RREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLA 184

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  142 bits (359), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 72/167 (43%), Positives = 102/167 (61%), Gaps = 1/167 (0%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           + K ++IGD GVGKSCLL +                    R IE+ G++IKLQIWDTAGQ
Sbjct: 30  IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ 89
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
            RFR +T +YYRGA G L+VYD+T  S++N++ +W+ +     + N   IL+GNKAD+ E
Sbjct: 90  GRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADL-E 148
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 181
           ++R V   + +  A+E G+ F E SAKT  NVE+ F   A+ I Q +
Sbjct: 149 AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNI 195

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score =  142 bits (359), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 75/169 (44%), Positives = 103/169 (60%), Gaps = 5/169 (2%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           K++L GD+ VGKS  L+R                  +++T+ +DG+R  LQ+WDTAGQER
Sbjct: 30  KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER 89
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADM---- 132
           FR+I  +Y+R A G+LL+YDVT E SF NIR W+  IE  A + V  +LVGNKAD+    
Sbjct: 90  FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTA 149
Query: 133 -DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
             E ++ VP   G+ LA  YG  F ETSAK   N+ E    +AR++K+R
Sbjct: 150 ATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKR 198

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  140 bits (353), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 100/162 (61%), Gaps = 1/162 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAGQE
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           R+ ++   YYRGA   ++VYD+T+  +F   +NW++ +++ AS N+   L GNKAD+  S
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL-AS 124
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
           KRAV   + QA AD+  + F ETSAKT +NV E+F +IA+ +
Sbjct: 125 KRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  140 bits (353), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 68/164 (41%), Positives = 103/164 (62%), Gaps = 1/164 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           R+ ++   YYRGA   ++VYD+T+E SF   +NW++ +++ AS N+   L GNKAD+  +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-AN 125
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 179
           KRAV   + Q+ AD+  + F ETSAKT++NV E+F +IA+ + +
Sbjct: 126 KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  140 bits (352), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 68/164 (41%), Positives = 103/164 (62%), Gaps = 1/164 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           R+ ++   YYRGA   ++VYD+T+E SF   +NW++ +++ AS N+   L GNKAD+  +
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-AN 126
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 179
           KRAV   + Q+ AD+  + F ETSAKT++NV E+F +IA+ + +
Sbjct: 127 KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 170

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  140 bits (352), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 100/162 (61%), Gaps = 1/162 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAGQE
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           R+ ++   YYRGA   ++VYD+T+  +F   +NW++ +++ AS N+   L GNKAD+  S
Sbjct: 64  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL-AS 122
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
           KRAV   + QA AD+  + F ETSAKT +NV E+F +IA+ +
Sbjct: 123 KRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  139 bits (351), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 68/164 (41%), Positives = 103/164 (62%), Gaps = 1/164 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAGQE
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           R+ ++   YYRGA   ++VYD+T+E SF   +NW++ +++ AS N+   L GNKAD+  +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-AN 125
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 179
           KRAV   + Q+ AD+  + F ETSAKT++NV E+F +IA+ + +
Sbjct: 126 KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 68/164 (41%), Positives = 103/164 (62%), Gaps = 1/164 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAGQE
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           R+ ++   YYRGA   ++VYD+T+E SF   +NW++ +++ AS N+   L GNKAD+  +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-AN 125
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 179
           KRAV   + Q+ AD+  + F ETSAKT++NV E+F +IA+ + +
Sbjct: 126 KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 68/164 (41%), Positives = 103/164 (62%), Gaps = 1/164 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAGQE
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           R+ ++   YYRGA   ++VYD+T+E SF   +NW++ +++ AS N+   L GNKAD+  +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-AN 125
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 179
           KRAV   + Q+ AD+  + F ETSAKT++NV E+F +IA+ + +
Sbjct: 126 KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/164 (41%), Positives = 103/164 (62%), Gaps = 1/164 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAGQE
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           R+ ++   YYRGA   ++VYD+T+E SF   +NW++ +++ AS N+   L GNKAD+  +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-AN 125
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 179
           KRAV   + Q+ AD+  + F ETSAKT++NV E+F +IA+ + +
Sbjct: 126 KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  138 bits (348), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/164 (41%), Positives = 103/164 (62%), Gaps = 1/164 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAGQE
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           R+ ++   YYRGA   ++VYD+T+E SF   +NW++ +++ AS N+   L GNKAD+  +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-AN 125
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 179
           KRAV   + Q+ AD+  + F ETSAKT++NV E+F +IA+ + +
Sbjct: 126 KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  137 bits (346), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 99/156 (63%), Gaps = 1/156 (0%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L K++LIGDSGVGKS LL R                    RTIE++ K+IK QIWDTAG 
Sbjct: 10  LFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGL 69
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ER+R IT+AYYRGA+G L+VYD++  SS+ N  +W+  + ++A DNV   L+GNK+D+  
Sbjct: 70  ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDL-A 128
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170
             RAVPT + +  A E  + F ETSA  + NV++ F
Sbjct: 129 HLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAF 164

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  137 bits (345), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 68/164 (41%), Positives = 102/164 (62%), Gaps = 1/164 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           R+ ++   YYRGA   ++VYD+T+E SF   +NW++ +++ AS N+   L GNKAD+  +
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-AN 126
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 179
           KRAV   + Q+ AD+  + F ETSAKT+ NV E+F +IA+ + +
Sbjct: 127 KRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKLPK 170

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  137 bits (345), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 67/164 (40%), Positives = 102/164 (62%), Gaps = 1/164 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           R+ ++   YYRGA   ++VYD+T+E SF   +NW++ +++ AS N+   L GNKAD+  +
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-AN 124
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 179
           KRAV   + Q+ AD+  + F ETSAKT++NV E+F +IA+ + +
Sbjct: 125 KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 168

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  137 bits (344), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 67/162 (41%), Positives = 99/162 (61%), Gaps = 1/162 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           R+ ++   YYRGA   ++VYD+T+  +F   +NW++ +++ AS N+   L GNKAD+  S
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL-AS 124
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
           KRAV   + QA AD+  + F ETSAKT +NV E+F +IA+ +
Sbjct: 125 KRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  136 bits (342), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 73/167 (43%), Positives = 96/167 (57%), Gaps = 1/167 (0%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L K L+IG++G GKSCLL +                    + I + GK +KLQIWDTAGQ
Sbjct: 10  LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 69
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ERFR++T +YYRGA G LLVYD+T   ++N + NW+ +    AS N+  IL GNK D+D 
Sbjct: 70  ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD- 128
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 181
           + R V   +    A E  + F ETSA T  NVEE F   AR I  ++
Sbjct: 129 ADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKI 175

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  135 bits (340), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 72/167 (43%), Positives = 95/167 (56%), Gaps = 1/167 (0%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L K L+IG +G GKSCLL +                    R + + GK +KLQIWDTAGQ
Sbjct: 25  LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ 84
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ERFR++T +YYRGA G LLVYD+T   ++N++  W+ +    AS N+  IL GNK D+D 
Sbjct: 85  ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD- 143
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 181
            +R V   +    A E  + F ETSA T  NVEE F   AR I  ++
Sbjct: 144 PEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKI 190

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  134 bits (336), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 72/163 (44%), Positives = 94/163 (57%), Gaps = 1/163 (0%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L K L+IG++G GKSCLL +                    + I + GK +KLQIWDTAGQ
Sbjct: 11  LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 70
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ERFR++T +YYRGA G LLVYD+T   ++N + NW+ +    AS N+  IL GNK D+D 
Sbjct: 71  ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD- 129
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
           + R V   +    A E  + F ETSA T  +VEE F   AR I
Sbjct: 130 ADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 172

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 65/178 (36%), Positives = 105/178 (58%), Gaps = 9/178 (5%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+G+S VGKS L+LR                    +++ LD   +K +IWDTAGQE
Sbjct: 9   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           R+ ++   YYRGA   ++VYD+T++ +F   + W++ +++ AS ++   L GNKAD+  +
Sbjct: 69  RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADL-AN 127
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTI 193
           KR V   + QA AD+  + F ETSAKT +NV ++F +IA+ +         ++EPQ +
Sbjct: 128 KRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL--------PKSEPQNL 177

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score =  131 bits (329), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 67/171 (39%), Positives = 103/171 (60%), Gaps = 6/171 (3%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           + K+++IGDS VGK+CL  R                  + R +++DG+RIK+Q+WDTAGQ
Sbjct: 20  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 75  ERFR-TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADM 132
           ERFR ++   YYR    ++ VYD+T+ +SF+++  WI   +QH  ++++ +ILVGNK D+
Sbjct: 80  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139
Query: 133 DESKRAVPTSKGQALADEYGIKFFETSAKT---NLNVEEVFFSIARDIKQR 180
             S   VPT   Q  AD + +  FETSAK    N +VE +F ++A  +K  
Sbjct: 140 -RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSH 189

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score =  131 bits (329), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 72/191 (37%), Positives = 114/191 (59%), Gaps = 13/191 (6%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGK----------RI 64
           LIKLL +GDSGVGK+  L R                  + + +  + +          ++
Sbjct: 25  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKV 84
Query: 65  KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNK 123
            LQ+WDTAGQERFR++TTA++R AMG LL++D+T + SF N+RNW+  ++ +A  +N + 
Sbjct: 85  HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDI 144
Query: 124 ILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD 183
           +L+GNKAD+ + +R V   + + LAD+YGI +FETSA T  NVE+   ++   I +R+  
Sbjct: 145 VLIGNKADLPD-QREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQ 203
Query: 184 TDSRAE-PQTI 193
              + + P T+
Sbjct: 204 CVEKTQIPDTV 214

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  130 bits (328), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 71/163 (43%), Positives = 93/163 (57%), Gaps = 1/163 (0%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L K L+IG++G GKSCLL +                    + I + GK +KLQIWDTAG 
Sbjct: 8   LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGL 67
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ERFR++T +YYRGA G LLVYD+T   ++N + NW+ +    AS N+  IL GNK D+D 
Sbjct: 68  ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD- 126
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
           + R V   +    A E  + F ETSA T  +VEE F   AR I
Sbjct: 127 ADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 169

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score =  130 bits (328), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 101/166 (60%), Gaps = 12/166 (7%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIEL----------DGKRI 64
           LIK L +GDSGVGK+ +L +                  + + +             G+RI
Sbjct: 11  LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRI 70
Query: 65  KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNK 123
            LQ+WDTAG ERFR++TTA++R AMG LL++D+T+E SF N+RNWI  ++ HA S+N + 
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDI 130
Query: 124 ILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEV 169
           +L GNK+D+ E +RAV   + + LA++YGI +FETSA    N+   
Sbjct: 131 VLCGNKSDL-EDQRAVKEEEARELAEKYGIPYFETSAANGTNISHA 175

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score =  130 bits (326), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 67/171 (39%), Positives = 101/171 (59%), Gaps = 6/171 (3%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           + K+++IGDS VGK+CL  R                  + R +++DG+RIK+Q+WDTAGQ
Sbjct: 29  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 75  ERFR-TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADM 132
           ERFR ++   YYR    ++ VYD T+ +SF+++  WI   +QH  ++++ +ILVGNK D+
Sbjct: 89  ERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 148
Query: 133 DESKRAVPTSKGQALADEYGIKFFETSAKT---NLNVEEVFFSIARDIKQR 180
             S   VPT   Q  AD +    FETSAK    N +VE +F ++A  +K  
Sbjct: 149 -RSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKLKSH 198

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/168 (38%), Positives = 101/168 (60%), Gaps = 1/168 (0%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           + K++LIG+SGVGK+ LL R                    RT+ L    +K QIWDTAG 
Sbjct: 10  VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGL 69
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ER+R IT+AYYRGA+G LLV+D+T   ++  +  W++ +  HA   +  +LVGNK+D+ +
Sbjct: 70  ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQ 129
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA 182
           + R VPT + +  A+  G+ F ETSA  + NVE  F ++ ++I  +++
Sbjct: 130 A-REVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVS 176

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  129 bits (324), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/168 (38%), Positives = 101/168 (60%), Gaps = 1/168 (0%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           + K++LIG+SGVGK+ LL R                    RT+ L    +K QIWDTAG 
Sbjct: 25  VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGL 84
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ER+R IT+AYYRGA+G LLV+D+T   ++  +  W++ +  HA   +  +LVGNK+D+ +
Sbjct: 85  ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQ 144
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA 182
           + R VPT + +  A+  G+ F ETSA  + NVE  F ++ ++I  +++
Sbjct: 145 A-REVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVS 191

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/165 (43%), Positives = 98/165 (59%), Gaps = 3/165 (1%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +K+L+IG+SGVGKS LLLR                  K++TI +DG + KL IWDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN-VNKILVGNKADMDE 134
           RFRT+T +YYRGA G++LVYDVT   +F  + NW+  +E + + N +   LVGNK  +D+
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNK--IDK 133
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 179
             R V  ++G   A ++   F E SAKT   V+  F  +   I Q
Sbjct: 134 ENREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQ 178

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  127 bits (319), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 71/164 (43%), Positives = 98/164 (59%), Gaps = 2/164 (1%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIEL-DGKRIKLQIWDTAG 73
           L K++LIGDSGVGKS LL R                    ++I+L + K IK QIWDTAG
Sbjct: 7   LFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAG 66
Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133
           QER+R IT+AYYRGA+G LLVYD+T ++SF NI  W++ +  +A  N+  +LVGNK+D+ 
Sbjct: 67  QERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDL- 125
Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
           +  R +  +     A +  + F ETSA    NVE  F  +  +I
Sbjct: 126 KHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEI 169

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score =  127 bits (319), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 73/191 (38%), Positives = 114/191 (59%), Gaps = 13/191 (6%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELD--------GK--RI 64
           LIKLL +GDSGVGK+  L R                  + + +  D        GK  ++
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 65  KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNK 123
            LQ+WDTAG ERFR++TTA++R AMG LL++D+T + SF N+RNW+  ++ +A  +N + 
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDI 130
Query: 124 ILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD 183
           +L+GNKAD+ + +R V   + + LA++YGI +FETSA T  NVE+   ++   I +R+  
Sbjct: 131 VLIGNKADLPD-QREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRMEK 189
Query: 184 TDSRAE-PQTI 193
              + + P T+
Sbjct: 190 CVEKTQVPDTV 200

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score =  127 bits (318), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 73/191 (38%), Positives = 114/191 (59%), Gaps = 13/191 (6%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELD--------GK--RI 64
           LIKLL +GDSGVGK+  L R                  + + +  D        GK  ++
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 65  KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNK 123
            LQ+WDTAG ERFR++TTA++R AMG LL++D+T + SF N+RNW+  ++ +A  +N + 
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDI 130
Query: 124 ILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD 183
           +L+GNKAD+ + +R V   + + LA++YGI +FETSA T  NVE+   ++   I +R+  
Sbjct: 131 VLIGNKADLPD-QREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRMEK 189
Query: 184 TDSRAE-PQTI 193
              + + P T+
Sbjct: 190 CVEKTQVPDTV 200

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  125 bits (315), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 95/159 (59%), Gaps = 1/159 (0%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+L+GD G GKS L+LR                    +T+ ++   +K +IWDTAGQER
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK 136
           + ++   YYRGA   ++V+DVT+++SF   + W++ ++   + N+   L GNK+D+ +++
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 137 RAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR 175
           + V     Q  A E G+ F ETSAKT  NV+E+F+ IAR
Sbjct: 134 K-VTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIAR 171

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/164 (39%), Positives = 94/164 (57%), Gaps = 2/164 (1%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IKL+L+G++ VGKS ++LR                    + + ++   +K +IWDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKAD--MD 133
           RF ++   YYR A   L+VYDVT   SF   R+W++ + + AS ++   LVGNK D   +
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123
Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
             +R V   +G+ LA+E G+ FFETSAKT  NV +VF  I   I
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/165 (41%), Positives = 100/165 (60%), Gaps = 12/165 (7%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELD--------GK--RI 64
           LIKLL +GDSGVGK+  L R                  + + +  D        GK  ++
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 65  KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNK 123
            LQ+WDTAG ERFR++TTA++R A G LL +D+T + SF N+RNW   ++ +A  +N + 
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDI 130
Query: 124 ILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE 168
           +L+GNKAD+ + +R V   + + LA++YGI +FETSA T  NVE+
Sbjct: 131 VLIGNKADLPD-QREVNERQARELAEKYGIPYFETSAATGQNVEK 174

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/165 (41%), Positives = 100/165 (60%), Gaps = 12/165 (7%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELD--------GK--RI 64
           LIKLL +GDSGVGK+  L R                  + + +  D        GK  ++
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 65  KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNK 123
            LQ+WDTAG ERFR++TTA++R A G LL +D+T + SF N+RNW   ++ +A  +N + 
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDI 130
Query: 124 ILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE 168
           +L+GNKAD+ + +R V   + + LA++YGI +FETSA T  NVE+
Sbjct: 131 VLIGNKADLPD-QREVNERQARELAEKYGIPYFETSAATGQNVEK 174

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score =  121 bits (303), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 69/174 (39%), Positives = 100/174 (57%), Gaps = 10/174 (5%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIK-LQIWDTAG 73
           ++K++++GDSGVGK+ L+ R                    + + +DG ++  +Q+WDTAG
Sbjct: 8   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK------ILVG 127
           QERF+++  A+YRGA   +LVYDVT+ SSF NI++W      HA  NVN       +++G
Sbjct: 68  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHA--NVNSPETFPFVILG 125
Query: 128 NKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVFFSIARDIKQR 180
           NK D +ESK+ V     Q LA   G I  F TSAK  +NV+  F  IAR   Q+
Sbjct: 126 NKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 179

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  120 bits (300), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 96/169 (56%), Gaps = 5/169 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            K++L+G+  VGK+ L+LR                    + + + GKR+ L IWDTAGQE
Sbjct: 21  FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 80
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           RF  +   YYR + G +LVYD+TDE SF  ++NW++ + +   + +   +VGNK D+ E 
Sbjct: 81  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL-EK 139
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADT 184
           +R V   + ++ A+  G K + TSAK N  +EE+F     D+ +R+ +T
Sbjct: 140 ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL----DLCKRMIET 184

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  120 bits (300), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 96/169 (56%), Gaps = 5/169 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            K++L+G+  VGK+ L+LR                    + + + GKR+ L IWDTAGQE
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           RF  +   YYR + G +LVYD+TDE SF  ++NW++ + +   + +   +VGNK D+ E 
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL-EK 125
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADT 184
           +R V   + ++ A+  G K + TSAK N  +EE+F     D+ +R+ +T
Sbjct: 126 ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL----DLCKRMIET 170

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  120 bits (300), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 96/169 (56%), Gaps = 5/169 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            K++L+G+  VGK+ L+LR                    + + + GKR+ L IWDTAGQE
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           RF  +   YYR + G +LVYD+TDE SF  ++NW++ + +   + +   +VGNK D+ E 
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL-EK 125
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADT 184
           +R V   + ++ A+  G K + TSAK N  +EE+F     D+ +R+ +T
Sbjct: 126 ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL----DLCKRMIET 170

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  118 bits (295), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 90/162 (55%), Gaps = 1/162 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +K+ L+GD+GVGKS ++ R                    +T+    +  K  IWDTAGQE
Sbjct: 24  LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           RF ++   YYRG+   ++VYD+T + SF  ++ W++ +++H  +N+   + GNK D+ + 
Sbjct: 84  RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
            R VP    +  A+  G    ETSAK  +N+EE+F  I+R I
Sbjct: 144 -REVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  117 bits (293), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 89/162 (54%), Gaps = 1/162 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +K+ L+GD+GVGKS ++ R                    +T++   +  K  IWDTAGQE
Sbjct: 6   LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           RFR +   YYRG+   ++VYD+T E +F+ ++NW+R + QH   ++   + GNK D+ + 
Sbjct: 66  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 125
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
            R V     +  AD     F ETSAK  +N+ E+F  I+R I
Sbjct: 126 -REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 88/162 (54%), Gaps = 1/162 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +K+ L+GD+GVGKS ++ R                    +T++   +  K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           RFR +   YYRG+   ++VYD+T E +F+ ++NW+R + QH   ++   + GNK D+ + 
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
            R V     +  AD     F ETSAK  +N+ E+F  I+R I
Sbjct: 127 -REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  110 bits (275), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 65/191 (34%), Positives = 109/191 (57%), Gaps = 8/191 (4%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L+K++++GDSGVGK+ L+ +                    + + +D + + +QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKILVGNKA 130
           ERF+++  A+YRGA   +LV+DVT  ++F  + +W       AS    +N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 131 DMDESKRAVPTSKGQALA-DEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAE 189
           D +   R V T + QA    +  I +FETSAK  +NVE+ F +IAR+  ++  + +   E
Sbjct: 128 DFE--NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNE 185
Query: 190 -PQTIKINQPD 199
            P+ IK+++ D
Sbjct: 186 FPEPIKLDKND 196

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  110 bits (274), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 64/189 (33%), Positives = 109/189 (57%), Gaps = 8/189 (4%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L+K++++GDSGVGK+ L+ +                    + + +D + + +QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKILVGNKA 130
           ERF+++  A+YRGA   +LV+DVT  ++F  + +W       AS    +N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 131 DMDESKRAVPTSKGQALA-DEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAE 189
           D++   R V T + QA    +  I +FETSAK  +NVE+ F +IAR+  ++  + +   E
Sbjct: 128 DLE--NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNE 185
Query: 190 -PQTIKINQ 197
            P+ IK+++
Sbjct: 186 FPEPIKLDK 194

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 90/168 (53%), Gaps = 7/168 (4%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L K++L+GD GVGKS L+ R                    + +E+DG  + +QIWDTAGQ
Sbjct: 11  LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA----SDNVNKILVGNKA 130
           ERFR++ T +YRG+   LL + V D  SF N+ NW +    +A     ++   +++GNK 
Sbjct: 71  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKT 130
Query: 131 DMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVFFSIARDI 177
           D+ E  R V T + QA   + G   +FETSAK + NV   F    R I
Sbjct: 131 DIKE--RQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 91/159 (57%), Gaps = 1/159 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+ +G+  VGK+ L+ R                    +T+ L+ + ++LQ+WDTAGQE
Sbjct: 15  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           RFR++  +Y R +   ++VYD+T+ +SF+    WI ++      +V  +LVGNK D+ + 
Sbjct: 75  RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD- 133
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA 174
           KR V T +G+  A E  + F ETSAK   NV+++F  +A
Sbjct: 134 KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 172

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  108 bits (269), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 64/191 (33%), Positives = 109/191 (57%), Gaps = 8/191 (4%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L+K++++GDSGVGK+ L+ +                    + + +D + + +QIWDTAG 
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKILVGNKA 130
           ERF+++  A+YRGA   +LV+DVT  ++F  + +W       AS    +N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 131 DMDESKRAVPTSKGQALA-DEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAE 189
           D++   R V T + QA    +  I +FETSAK  +NVE+ F +IAR+  ++  + +   E
Sbjct: 128 DLE--NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNE 185
Query: 190 -PQTIKINQPD 199
            P+ IK+++ D
Sbjct: 186 FPEPIKLDKND 196

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score =  107 bits (266), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 88/161 (54%), Gaps = 7/161 (4%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L K++L+GD GVGKS L+ R                    + +E+DG  + +QIWDTAGQ
Sbjct: 7   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA----SDNVNKILVGNKA 130
           ERFR++ T +YRG+   LL + V D  SF N+ NW +    +A     ++   +++GNK 
Sbjct: 67  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 131 DMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
           D+  S+R V T + QA   + G   +FETSAK   NV   F
Sbjct: 127 DI--SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 165

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score =  107 bits (266), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 88/161 (54%), Gaps = 7/161 (4%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L K++L+GD GVGKS L+ R                    + +E+DG  + +QIWDTAGQ
Sbjct: 9   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA----SDNVNKILVGNKA 130
           ERFR++ T +YRG+   LL + V D  SF N+ NW +    +A     ++   +++GNK 
Sbjct: 69  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 131 DMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
           D+  S+R V T + QA   + G   +FETSAK   NV   F
Sbjct: 129 DI--SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 167

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  107 bits (266), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 97/167 (58%), Gaps = 7/167 (4%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L+K++++GDSGVGK+ L+ +                    + + +D + + +QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKILVGNKA 130
           ERF+++  A+YRGA   +LV+DVT  ++F  + +W       AS    +N   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 131 DMDESKRAVPTSKGQALA-DEYGIKFFETSAKTNLNVEEVFFSIARD 176
           D++   R V T + QA    +  I +FETSAK  +NVE+ F +IAR+
Sbjct: 128 DLE--NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARN 172

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 89/159 (55%), Gaps = 1/159 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+ +G+  VGK+ L+ R                    +T+ L+ + I+LQ+WDTAGQE
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           RFR++  +Y R +   ++VYD+T+ +SF     WI ++      +V  +LVGNK D+ + 
Sbjct: 67  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD- 125
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA 174
           KR V   +G+  A E  + F ETSAK   NV+++F  +A
Sbjct: 126 KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 164

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 90/159 (56%), Gaps = 1/159 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+ +G+  VGK+ L+ R                    +T+ L+ + ++LQ+WDTAGQE
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           RFR++  +Y R +   ++VYD+T+ +SF     WI ++      +V  +LVGNK D+ + 
Sbjct: 63  RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLAD- 121
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA 174
           KR +   +G+  A E  + F ETSAKT  NV+++F  +A
Sbjct: 122 KRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVA 160

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 90/168 (53%), Gaps = 7/168 (4%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L+K++L+GD GVGKS L+ R                    R +E+DG+ + LQIWDTAGQ
Sbjct: 7   LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA----SDNVNKILVGNKA 130
           ERF+++ T +YRGA   LL + V D  SF N+ NW +    +A     ++   +++GNK 
Sbjct: 67  ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
Query: 131 DMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVFFSIARDI 177
           D ++  R V T + Q    E G   + ETSAK + NV   F    R +
Sbjct: 127 DKED--RQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQV 172

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 99/184 (53%), Gaps = 2/184 (1%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+ +G+  VGK+ L+ R                    +T+ L+ + I+LQ+WDTAG E
Sbjct: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           RFR++  +Y R +   ++VYD+T+ +SF     WI ++      +V  +LVGNK D+ + 
Sbjct: 74  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD- 132
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTD-SRAEPQTIK 194
           KR V   +G+  A E  + F ETSAK   NV+++F  +A  +    +  D SR +   IK
Sbjct: 133 KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIK 192
Query: 195 INQP 198
           + +P
Sbjct: 193 LEKP 196

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score =  104 bits (259), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 97/169 (57%), Gaps = 6/169 (3%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L K++++G  GVGKS L L+                  + + + LDG+ +++ I DTAG 
Sbjct: 7   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 65
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFN---NIRNWIRNIEQHASDNVNKILVGNKAD 131
           E +  I   Y+R   G LLV+ +T+  SF      R  I  ++    D +  ++VGNK+D
Sbjct: 66  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAE-EDKIPLLVVGNKSD 124
Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           ++E +R VP  + ++ A+E+G+++ ETSAKT  NV++VFF + R+I+ +
Sbjct: 125 LEE-RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTK 172

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  104 bits (259), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 89/159 (55%), Gaps = 1/159 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+ +G+  VGK+ L+ R                    +T+ L+ + ++LQ+WDTAGQE
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           RFR++  +Y R +   ++VYD+T+ +SF     WI ++      +V  +LVGNK D+ + 
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD- 120
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA 174
           KR V   +G+  A E  + F ETSAK   NV+++F  +A
Sbjct: 121 KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 159

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score =  103 bits (258), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 97/169 (57%), Gaps = 6/169 (3%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L K++++G  GVGKS L L+                  + + + LDG+ +++ I DTAG 
Sbjct: 3   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 61
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFN---NIRNWIRNIEQHASDNVNKILVGNKAD 131
           E +  I   Y+R   G LLV+ +T+  SF      R  I  ++    D +  ++VGNK+D
Sbjct: 62  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAE-EDKIPLLVVGNKSD 120
Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           ++E +R VP  + ++ A+E+G+++ ETSAKT  NV++VFF + R+I+ +
Sbjct: 121 LEE-RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTK 168

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  103 bits (257), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 99/184 (53%), Gaps = 2/184 (1%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+ +G+  VGK+ L+ R                    +T+ L+ + ++LQ+WDTAG E
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           RFR++  +Y R +   ++VYD+T+ +SF     WI ++      +V  +LVGNK D+ + 
Sbjct: 77  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD- 135
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTD-SRAEPQTIK 194
           KR V   +G+  A E  + F ETSAK   NV+++F  +A  +    +  D SR +   IK
Sbjct: 136 KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIK 195
Query: 195 INQP 198
           + +P
Sbjct: 196 LEKP 199

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 88/159 (55%), Gaps = 1/159 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+ +G+  VGK+ L+ R                    +T+ L+ + ++LQ+WDTAG E
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           RFR++  +Y R +   ++VYD+T+ +SF     WI ++      +V  +LVGNK D+ + 
Sbjct: 67  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD- 125
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA 174
           KR V   +G+  A E  + F ETSAK   NV+++F  +A
Sbjct: 126 KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 164

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 84/154 (54%), Gaps = 1/154 (0%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+ +G+  VGK+ ++ R                    +T+ LD   ++LQ+WDTAGQER
Sbjct: 3   KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK 136
           FR++  +Y R +   ++VYD+T+  SF N   WI++I      +V   LVGNK D+ +  
Sbjct: 63  FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL- 121
Query: 137 RAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170
           R V   +G   A EY   F ETSAK   N++ +F
Sbjct: 122 RKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLF 155

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score =  101 bits (251), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 93/167 (55%), Gaps = 3/167 (1%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L K++++G  GVGKS L L+                  + + + LDG+ +++ I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 62
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD-NVNKILVGNKADMD 133
           E +  I   Y+R   G L V+ +T+  SF    ++   I +   D NV  +LVGNK+D+ 
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL- 121
Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           E KR V   + +  AD++ + + ETSAKT  NV++VFF + R+I+ R
Sbjct: 122 EDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 93/167 (55%), Gaps = 3/167 (1%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L K++++G  GVGKS L L+                  + + + LDG+ +++ I DTAGQ
Sbjct: 18  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 76
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD-NVNKILVGNKADMD 133
           E +  I   Y+R   G L V+ +T+  SF    ++   I +   D NV  +LVGNK+D+ 
Sbjct: 77  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL- 135
Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           E KR V   + +  A+++ + + ETSAKT  NV++VFF + R+I+ R
Sbjct: 136 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 182

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 93/167 (55%), Gaps = 3/167 (1%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L K++++G  GVGKS L L+                  + + + LDG+ +++ I DTAGQ
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 64
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD-NVNKILVGNKADMD 133
           E +  I   Y+R   G L V+ +T+  SF    ++   I +   D NV  +LVGNK+D+ 
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL- 123
Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           E KR V   + +  A+++ + + ETSAKT  NV++VFF + R+I+ R
Sbjct: 124 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 170

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 93/167 (55%), Gaps = 3/167 (1%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L K++++G  GVGKS L L+                  + + + LDG+ +++ I DTAGQ
Sbjct: 14  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 72
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD-NVNKILVGNKADMD 133
           E +  I   Y+R   G L V+ +T+  SF    ++   I +   D NV  +LVGNK+D+ 
Sbjct: 73  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL- 131
Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           E KR V   + +  A+++ + + ETSAKT  NV++VFF + R+I+ R
Sbjct: 132 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 178

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 89/165 (53%), Gaps = 4/165 (2%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++                  + + + +DG+   L I DTAGQE 
Sbjct: 5   KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEE 63
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDES 135
           +  +   Y R   G L V+ + +  SF +I  +   I++   SD+V  +LVGNK D+  +
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--A 121
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
            R V + + Q LA  YGI + ETSAKT   VE+ F+++ R+I+Q 
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 89/165 (53%), Gaps = 4/165 (2%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++                  + + + +DG+   L I DTAGQE 
Sbjct: 5   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEE 63
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDES 135
           +  +   Y R   G L V+ + +  SF +I  +   I++   SD+V  +LVGNK D+  +
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--A 121
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
            R V + + Q LA  YGI + ETSAKT   VE+ F+++ R+I+Q 
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 89/165 (53%), Gaps = 4/165 (2%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++                  + + + +DG+   L I DTAGQE 
Sbjct: 5   KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEE 63
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDES 135
           +  +   Y R   G L V+ + +  SF +I  +   I++   SD+V  +LVGNK D+  +
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--A 121
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
            R V + + Q LA  YGI + ETSAKT   VE+ F+++ R+I+Q 
Sbjct: 122 GRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 97.8 bits (242), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 89/165 (53%), Gaps = 4/165 (2%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++                  + + + +DG+   L I DTAGQE 
Sbjct: 5   KLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEE 63
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDES 135
           +  +   Y R   G L V+ + +  SF +I  +   I++   SD+V  +LVGNK D+  +
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--A 121
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
            R V + + Q LA  YGI + ETSAKT   VE+ F+++ R+I+Q 
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 97.4 bits (241), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 87/166 (52%), Gaps = 4/166 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK++++G+  VGKS ++ R                    R I+++ + ++L +WDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKAD-MDE 134
            F  IT AYYRGA   +LV+  TD  SF  I +W   +     D +   LV NK D +D+
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGD-IPTALVQNKIDLLDD 124
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           S   +   + + LA    ++F+ TS K +LNV EVF  +A    Q+
Sbjct: 125 S--CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 90/165 (54%), Gaps = 4/165 (2%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++                  + + + +DG+   L I DTAGQE 
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEE 64
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDES 135
           +  +   Y R   G L V+ + +  SF +I ++   I++   S++V  +LVGNK+D+   
Sbjct: 65  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL--P 122
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
            R V T + Q LA  YGI F ETSAKT   V++ F+++ R+I++ 
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 167

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 89/165 (53%), Gaps = 4/165 (2%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++                  + + + +DG+   L I DTAGQE 
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEE 64
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDES 135
           +  +   Y R   G L V+ + +  SF +I ++   I++   S++V  +LVGNK D+   
Sbjct: 65  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL--P 122
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
            R V T + Q LA  YGI F ETSAKT   V++ F+++ R+I++ 
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 167

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 92/167 (55%), Gaps = 3/167 (1%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L K++++G  GVGKS L L+                  + + + LDG+ +++ I DTAG 
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 64
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD-NVNKILVGNKADMD 133
           E +  I   Y+R   G L V+ +T+  SF    ++   I +   D NV  +LVGNK+D+ 
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL- 123
Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           E KR V   + +  A+++ + + ETSAKT  NV++VFF + R+I+ R
Sbjct: 124 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 170

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 92/163 (56%), Gaps = 4/163 (2%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++                  + + +E+D ++  L+I DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTEQ 63
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDES 135
           F  +   Y +   G  LVY +T +S+FN++++    I +   +D+V  ILVGNK D+ E 
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDL-ED 122
Query: 136 KRAVPTSKGQALADEY-GIKFFETSAKTNLNVEEVFFSIARDI 177
           +R V   +GQ LA ++    F E+SAK+ +NV E+F+ + R I
Sbjct: 123 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 93.6 bits (231), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 92/163 (56%), Gaps = 4/163 (2%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++                  + + +E+D ++  L+I DTAG E+
Sbjct: 7   KLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTEQ 65
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDES 135
           F  +   Y +   G  LVY +T +S+FN++++    I +   +D+V  ILVGNK D+ E 
Sbjct: 66  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDL-ED 124
Query: 136 KRAVPTSKGQALADEY-GIKFFETSAKTNLNVEEVFFSIARDI 177
           +R V   +GQ LA ++    F E+SAK+ +NV E+F+ + R I
Sbjct: 125 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 80/146 (54%), Gaps = 13/146 (8%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
           +   SD+V  +LVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE+ F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQRLADTDSRAEPQTIKINQPD 199
            R+I+Q           +  K+N PD
Sbjct: 160 VREIRQH----------KLRKLNPPD 175

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 92/163 (56%), Gaps = 4/163 (2%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++                  + + +E+D ++  L+I DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQ 63
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDES 135
           F  +   Y +   G  LVY +T +S+FN++++    I +   +++V  ILVGNK D+ E 
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL-ED 122
Query: 136 KRAVPTSKGQALADEY-GIKFFETSAKTNLNVEEVFFSIARDI 177
           +R V   +GQ LA ++    F E+SAK+ +NV E+F+ + R I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 92/163 (56%), Gaps = 4/163 (2%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++                  + + +E+D ++  L+I DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQ 63
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDES 135
           F  +   Y +   G  LVY +T +S+FN++++    I +   +++V  ILVGNK D+ E 
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL-ED 122
Query: 136 KRAVPTSKGQALADEY-GIKFFETSAKTNLNVEEVFFSIARDI 177
           +R V   +GQ LA ++    F E+SAK+ +NV E+F+ + R I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
           +   SD+V  +LVGNK+D+  + R V + + Q LA  YGI + ETSAKT   VE+ F+++
Sbjct: 102 RVKDSDDVPMVLVGNKSDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 74/127 (58%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 47  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 106
Query: 115 Q-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
           +   SD+V  +LVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE+ F+++
Sbjct: 107 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 164
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 165 VREIRQH 171

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 74/127 (58%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 47  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 106
Query: 115 Q-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
           +   SD+V  +LVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE+ F+++
Sbjct: 107 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 164
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 165 VREIRQH 171

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 74/127 (58%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 48  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 107
Query: 115 Q-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
           +   SD+V  +LVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE+ F+++
Sbjct: 108 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 165
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 166 VREIRQH 172

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 74/127 (58%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
           +   SD+V  +LVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE+ F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 74/127 (58%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
           +   SD+V  +LVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE+ F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 74/127 (58%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
           +   SD+V  +LVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE+ F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 74/127 (58%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
           +   SD+V  +LVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE+ F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 74/127 (58%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
           +   SD+V  +LVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE+ F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 74/127 (58%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
           +   SD+V  +LVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE+ F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 74/127 (58%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
           +   SD+V  +LVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE+ F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 90.5 bits (223), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 74/127 (58%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
           +   SD+V  +LVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE+ F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 74/127 (58%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
           +   SD+V  +LVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE+ F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 74/127 (58%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 49  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 108
Query: 115 Q-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
           +   SD+V  +LVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE+ F+++
Sbjct: 109 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 166
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 167 VREIRQH 173

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 74/127 (58%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
           +   SD+V  +LVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE+ F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 74/127 (58%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
           +   SD+V  +LVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE+ F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 89.7 bits (221), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 74/127 (58%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
           +   SD+V  +LVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE+ F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 74/127 (58%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
           +   SD+V  +LVGN+ D+  + R V + + Q LA  YGI + ETSAKT   VE+ F+++
Sbjct: 102 RVKDSDDVPMVLVGNRCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 92/169 (54%), Gaps = 9/169 (5%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +KL + G +GVGKS L++R                  + +   +D + + ++I DTAGQE
Sbjct: 29  VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-IDDEVVSMEILDTAGQE 87
Query: 76  RFRTIT-TAYYRGAMGILLVYDVTDESSFNNIRNWIRNI--EQHASDNVNKILVGNKADM 132
              TI    + R   G +LVYD+TD  SF  +   ++NI  E     NV  ILVGNKAD+
Sbjct: 88  D--TIQREGHMRWGEGFVLVYDITDRGSFEEVLP-LKNILDEIKKPKNVTLILVGNKADL 144
Query: 133 DESKRAVPTSKGQALADEYGIKFFETSAKTNL-NVEEVFFSIARDIKQR 180
           D S R V T +G+ LA E    F+E SA T   N+ E+F+ + R++++R
Sbjct: 145 DHS-RQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR 192

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/126 (38%), Positives = 72/126 (57%), Gaps = 3/126 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 60  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIK 119
Query: 115 Q-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
           +   SD+V  +LVGNK D+    R V T +   LA  YGI F ETSAKT   VE+ F+++
Sbjct: 120 RVKDSDDVPMVLVGNKCDL--PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTL 177
Query: 174 ARDIKQ 179
            R+I+Q
Sbjct: 178 VREIRQ 183

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 59  LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HA 117
           +DG   +L I DTAGQE F  +   Y R   G LLV+ + D  SFN +      I +   
Sbjct: 52  VDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD 111
Query: 118 SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
            D+   +LVGNKAD+ ES+R VP S+  A    + + +FE SAK  LNV+E F  + R +
Sbjct: 112 RDDFPVVLVGNKADL-ESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170
Query: 178 KQ 179
           ++
Sbjct: 171 RK 172

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAG E +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
           +   SD+V  +LVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE+ F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DT GQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
           +   SD+V  +LVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE+ F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
           +   SD+V  +LVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE+ F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+ +Q 
Sbjct: 160 VREFRQH 166

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DT GQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
           +   SD+V  +LVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE+ F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 74/127 (58%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAG+E +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
           +   SD+V  +LVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE+ F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 75/127 (59%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I ++   I+
Sbjct: 43  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 102
Query: 115 Q-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
           +   S++V  +LVGNK+D+    R V T + Q LA  YGI F ETSAKT   V++ F+++
Sbjct: 103 RVKDSEDVPMVLVGNKSDL--PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 160
Query: 174 ARDIKQR 180
            R+I++ 
Sbjct: 161 VREIRKH 167

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 75/127 (59%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I ++   I+
Sbjct: 43  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 102
Query: 115 Q-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
           +   S++V  +LVGNK+D+    R V T + Q LA  YGI F ETSAKT   V++ F+++
Sbjct: 103 RVKDSEDVPMVLVGNKSDL--PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 160
Query: 174 ARDIKQR 180
            R+I++ 
Sbjct: 161 VREIRKH 167

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE    +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
           +   SD+V  +LVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE+ F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAG E +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 47  KQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 106
Query: 115 Q-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
           +   SD+V  +LVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE+ F+++
Sbjct: 107 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 164
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 165 VREIRQH 171

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTA QE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
           +   SD+V  +LVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE+ F+++
Sbjct: 102 RVKDSDDVPMVLVGNKXDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTA QE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
           +   SD+V  +LVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE+ F+++
Sbjct: 102 RVKDSDDVPMVLVGNKXDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAG E +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
           +   SD+V  +LVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE+ F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAG E +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
           +   SD+V  +LVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE+ F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAG E +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
           +   SD+V  +LVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE+ F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAG E +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
           +   SD+V  +LVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE+ F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAG E +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
           +   SD+V  +LVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE+ F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAG E +  +   Y R   G L V+ + +  SF +I ++   I+
Sbjct: 60  KQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 119
Query: 115 Q-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
           +   S++V  +LVGNK D+    R V T + Q LA  YGI F ETSAKT   V++ F+++
Sbjct: 120 RVKDSEDVPMVLVGNKCDL--PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 177
Query: 174 ARDIKQR 180
            R+I++ 
Sbjct: 178 VREIRKH 184

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                         +   IK  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           +F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  +L GNK D+ + 
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 134
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
           K     +K      +  +++++ SAK+N N E+ F  +AR +
Sbjct: 135 KV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                         +   IK  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           +F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  +L GNK D+ + 
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 134
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
           K     +K      +  +++++ SAK+N N E+ F  +AR +
Sbjct: 135 KV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                         +   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           +F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  +L GNK D+ + 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
           K     +K      +  +++++ SAK+N N E+ F  +AR +
Sbjct: 130 KV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                         +   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           +F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  +L GNK D+ + 
Sbjct: 71  KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
           K     +K      +  +++++ SAK+N N E+ F  +AR +
Sbjct: 130 KV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                         +   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           +F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  +L GNK D+ + 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
           K     +K      +  +++++ SAK+N N E+ F  +AR +
Sbjct: 130 KV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                         +   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           +F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  +L GNK D+ + 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
           K     +K      +  +++++ SAK+N N E+ F  +AR +
Sbjct: 130 KV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                         +   IK  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           +F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  +L GNK D+ + 
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 122
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
           K     +K      +  +++++ SAK+N N E+ F  +AR +
Sbjct: 123 KV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 161

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 59  LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HA 117
           +D +  +L I DTAGQE F  +   Y R   G LLV+ VTD  SF  I  + R I +   
Sbjct: 48  IDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKD 107
Query: 118 SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
            D    IL+GNKAD+D  +R V   +GQ LA +  + + E SAK  +NV++ F  + R I
Sbjct: 108 RDEFPMILIGNKADLD-HQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVI 166
Query: 178 KQ 179
           ++
Sbjct: 167 RK 168

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                         +   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           +F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  +L GNK D+ + 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
           K     +K      +  +++++ SAK+N N E+ F  +AR +
Sbjct: 130 KVK---AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                         +   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           +F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  +L GNK D+ + 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
           K     +K      +  +++++ SAK+N N E+ F  +AR +
Sbjct: 130 KVK---AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 4/162 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                         +   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           +F  +   YY  A   ++ +DVT   ++ N+ NW R++ +   +N+  +L GNK D+ + 
Sbjct: 71  KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
           K     +K      +  +++++ SAK+N N E+ F  +AR +
Sbjct: 130 KV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                         +   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           ++  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  +L GNK D+ + 
Sbjct: 71  KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
           K     +K      +  +++++ SAK+N N E+ F  +AR +
Sbjct: 130 KV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 85/172 (49%), Gaps = 15/172 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  +E+DG+R++L +WDTAGQE 
Sbjct: 12  KLVIVGDGACGKTCLLI-VNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQED 70
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADM--- 132
           +  +    Y  +  +L+ + +    S  N++  WI  +  H    V  ILVG K D+   
Sbjct: 71  YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEV-LHFCQGVPIILVGCKVDLRND 129
Query: 133 --------DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVFFSIAR 175
                    E ++ V + +GQ++AD+ G   ++E SAKT   V EVF +  R
Sbjct: 130 PQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAATR 181

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                     +   +   IK  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           +F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  +L GNK D+ E 
Sbjct: 73  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKER 131
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
           K     +K      +  +++++ SAK+N N E+ F  +AR +
Sbjct: 132 KV---KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 170

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 4/162 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                         +   IK  +WDTAG E
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           +F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  +L GNK D+ + 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
           K     +K      +  +++++ SAK+N N E+ F  +AR +
Sbjct: 130 KV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                     +   +   IK  +WDTAG E
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           +F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  +L GNK D+ E 
Sbjct: 65  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKER 123
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
           K     +K      +  +++++ SAK+N N E+ F  +AR +
Sbjct: 124 KVK---AKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 162

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 4/162 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                         +   IK  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           +F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  +L GNK D+ + 
Sbjct: 73  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 131
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
           K     +K      +  +++++ SAK+N N E+ F  +AR +
Sbjct: 132 KV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 170

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                     +   +   IK  +WDTAG E
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           +F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  +L GNK D+ E 
Sbjct: 66  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKER 124
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
           K     +K      +  +++++ SAK+N N E+ F  +AR +
Sbjct: 125 KVK---AKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 163

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 4/162 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                         +   IK  +WDTAG E
Sbjct: 7   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           +F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  +L GNK D+ + 
Sbjct: 67  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 125
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
           K     +K      +  +++++ SAK+N N E+ F  +AR +
Sbjct: 126 KVK---AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 164

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 73/120 (60%), Gaps = 4/120 (3%)
Query: 64  IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK 123
           IK  IWDTAGQER+ +I   YYRGA   ++V+D+++ ++ +  + W+  ++   S N   
Sbjct: 93  IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLK--ISSNYII 150
Query: 124 ILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD 183
           ILV NK  +D++K  V   + Q  A +  + F +TSAKT  N++ +F+ +A +I + + +
Sbjct: 151 ILVANK--IDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNIIN 208

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLI-VNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 65
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  ILVGNK D+  D
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Query: 134 ESKR---------AVPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
           E  R          V   +G+ +A+  G   + E SAKT   V EVF
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +K++L+GD G GK+ LL+                    +  +++ GK + L IWDTAGQ+
Sbjct: 35  VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMV-NLQVKGKPVHLHIWDTAGQD 93
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADMDE 134
            +  +   +Y  A  +LL +DVT  +SF+NI N W   +  H    V  I+VG K D+ +
Sbjct: 94  DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV-NHFCKKVPIIVVGCKTDLRK 152
Query: 135 SK-----------RAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
            K             V   +GQ +A   G + + E SA+ + NV  VF
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF 200

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLI-VNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 63
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  ILVGNK D+  D
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 122
Query: 134 ESKR---------AVPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
           E  R          V   +G+ +A+  G   + E SAKT   V EVF
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLI-VNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 63
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  ILVGNK D+  D
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 122
Query: 134 ESKR---------AVPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
           E  R          V   +G+ +A+  G   + E SAKT   V EVF
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 8   KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 66
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  ILVGNK D+  D
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 125
Query: 134 ESKR---------AVPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
           E  R          V   +G+ +A+  G   + E SAKT   V EVF
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 67
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  ILVGNK D+  D
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 126
Query: 134 ESKR---------AVPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
           E  R          V   +G+ +A+  G   + E SAKT   V EVF
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLI-VNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 65
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  ILVGNK D+  D
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Query: 134 ESKR---------AVPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
           E  R          V   +G+ +A+  G   + E SAKT   V EVF
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 11  KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 69
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  ILVGNK D+  D
Sbjct: 70  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 128
Query: 134 ESKR---------AVPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
           E  R          V   +G+ +A+  G   + E SAKT   V EVF
Sbjct: 129 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 175

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLI-VNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 65
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  ILVGNK D+  D
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Query: 134 ESKR---------AVPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
           E  R          V   +G+ +A+  G   + E SAKT   V EVF
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 65
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  ILVGNK D+  D
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Query: 134 ESKR---------AVPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
           E  R          V   +G+ +A+  G   + E SAKT   V EVF
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 67
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  ILVGNK D+  D
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 126
Query: 134 ESKR---------AVPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
           E  R          V   +G+ +A+  G   + E SAKT   V EVF
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 8   KLVIVGDVACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 66
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  ILVGNK D+  D
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 125
Query: 134 ESKR---------AVPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
           E  R          V   +G+ +A+  G   + E SAKT   V EVF
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 10  KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 68
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  ILVGNK D+  D
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 127
Query: 134 ESKR---------AVPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
           E  R          V   +G+ +A+  G   + E SAKT   V EVF
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 67
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  ILVGNK D+  D
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 126
Query: 134 ESKR---------AVPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
           E  R          V   +G+ +A+  G   + E SAKT   V EVF
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 84/167 (50%), Gaps = 13/167 (7%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
            IK + +GD  VGK+C+L+                       + +DG  + L +WDTAGQ
Sbjct: 6   FIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMD 133
           E +  +    YRGA   LL + +  ++S+ NI + W+  + +H +  +  +LVG K D+ 
Sbjct: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPEL-KHYAPGIPIVLVGTKLDLR 123
Query: 134 ESKR---------AVPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
           + K+         ++ T++G+ L    G +++ E S+KT  NV+ VF
Sbjct: 124 DDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 82/177 (46%), Gaps = 15/177 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLI-VFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 85
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADM--D 133
           +  +    Y     IL+ + V    S  NI   W+  + +H   NV  ILV NK D+  D
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEV-KHFCPNVPIILVANKKDLRSD 144
Query: 134 ESKR---------AVPTSKGQALADEY-GIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           E  R          V T  G+A+A       + E SAKT   V EVF +  R   Q+
Sbjct: 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQK 201

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 78/167 (46%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    I  IE+DGK+++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLI-VNSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQED 65
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADM--- 132
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  ILVGNK D+   
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRQD 124
Query: 133 DESKRAVPTSKGQALADEYG---------IKFFETSAKTNLNVEEVF 170
           + ++R +   K + +  E G           + E SAKT   V EVF
Sbjct: 125 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 171

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 78/167 (46%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    I  IE+DGK+++L +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQED 85
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADM--- 132
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  ILVGNK D+   
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRQD 144
Query: 133 DESKRAVPTSKGQALADEYG---------IKFFETSAKTNLNVEEVF 170
           + ++R +   K + +  E G           + E SAKT   V EVF
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 78/167 (46%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    I  IE+DGK+++L +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQED 85
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADM--- 132
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  ILVGNK D+   
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFXPNVPIILVGNKKDLRQD 144
Query: 133 DESKRAVPTSKGQALADEYG---------IKFFETSAKTNLNVEEVF 170
           + ++R +   K + +  E G           + E SAKT   V EVF
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 13/167 (7%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
            IK + +GD  VGK+C+L+                       + +DG  + L +WDTAGQ
Sbjct: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQ 64
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMD 133
           E +  +    YRGA   +L + +  ++S+ N+ + WI  + +H +  V  ILVG K D+ 
Sbjct: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLR 123
Query: 134 ESKR-------AVP--TSKGQALADEYGIK-FFETSAKTNLNVEEVF 170
           + K+       AVP  T++G+ L    G   + E S+KT  NV+ VF
Sbjct: 124 DDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVF 170

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 7   KLVIVGDVACGKTCLLI-VFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWDTAGQED 65
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADM--D 133
           +       Y     IL+ + +    S  NI   W   + +H   NV  ILVGNK D+  D
Sbjct: 66  YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Query: 134 ES---------KRAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
           E          +  V  ++G+ +A+  G   + E SAKT   V EVF
Sbjct: 125 EHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 47/126 (37%), Positives = 77/126 (61%), Gaps = 6/126 (4%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI---RNWIR 111
           + IE+D     L+I DTAG E+F ++   Y +   G +LVY + ++ SF +I   R+ I 
Sbjct: 42  KEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQII 101
Query: 112 NIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFF 171
            ++++  + V  ILVGNK D++  +    +S+G+ALA+E+G  F ETSAK+   V+E+F 
Sbjct: 102 RVKRY--EKVPVILVGNKVDLESEREVS-SSEGRALAEEWGCPFMETSAKSKTMVDELFA 158
Query: 172 SIARDI 177
            I R +
Sbjct: 159 EIVRQM 164

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 77.0 bits (188), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 78/167 (46%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAG E 
Sbjct: 10  KLVIVGDGACGKTCLLI-VNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED 68
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  ILVGNK D+  D
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 127
Query: 134 ESKR---------AVPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
           E  R          V   +G+ +A+  G   + E SAKT   V EVF
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
            IK + +GD  VGK+CLL+                       + ++G  + L +WDTAGQ
Sbjct: 8   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQ 66
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMD 133
           E +  +    YRGA   +L + +  ++S+ N+ + WI  + +H +  V  +LVG K D+ 
Sbjct: 67  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIVLVGTKLDLR 125
Query: 134 ESKR-------AVP--TSKGQALADEYGIK-FFETSAKTNLNVEEVFFSIARDIKQ 179
           + K+       AVP  T +G+ L    G   + E S+K+  NV+ VF +  R + Q
Sbjct: 126 DDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQ 181

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   ILVG K D+ +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEEVF 170
                     K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   ILVG K D+ +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEEVF 170
                     K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 11/165 (6%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
            IK + +GD  VGK+C+L+                       + +DG+ + L +WDTAGQ
Sbjct: 9   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGQIVNLGLWDTAGQ 67
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMD 133
           E +  +    YRGA   +L + +  ++S+ N+ + W+  + + A  NV  +LVG K D+ 
Sbjct: 68  EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLR 126
Query: 134 ESK-------RAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
           + K         + +++G+ L  + G   + E S+KT  NV+ VF
Sbjct: 127 DDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF 171

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 73/129 (56%), Gaps = 3/129 (2%)
Query: 54  IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI 113
           ++  E+D +   L + DTAGQE F  +   Y R   G L+VY VTD++SF ++  + + I
Sbjct: 56  LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLI 115
Query: 114 EQ-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK-TNLNVEEVFF 171
            +    ++   ILV NK D+    R V   +G+ +A +Y I + ETSAK   LNV++ F 
Sbjct: 116 LRVKDRESFPMILVANKVDL-MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH 174
Query: 172 SIARDIKQR 180
            + R I+Q+
Sbjct: 175 DLVRVIRQQ 183

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   ILVG K D+ +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEEVF 170
                     K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   ILVG K D+ +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 135 SK-----------RAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
            K             +   +G A+A E G +K+ E SA T   ++ VF
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   ILVG K D+ +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 135 SK-----------RAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
            K             +   +G A+A E G +K+ E SA T   ++ VF
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 73/129 (56%), Gaps = 3/129 (2%)
Query: 54  IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI 113
           ++  E+D +   L + DTAGQE F  +   Y R   G L+VY VTD++SF ++  + + I
Sbjct: 56  LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLI 115
Query: 114 EQ-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK-TNLNVEEVFF 171
            +    ++   ILV NK D+    R V   +G+ +A +Y I + ETSAK   LNV++ F 
Sbjct: 116 LRVKDRESFPMILVANKVDL-MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH 174
Query: 172 SIARDIKQR 180
            + R I+Q+
Sbjct: 175 DLVRVIRQQ 183

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 73/129 (56%), Gaps = 3/129 (2%)
Query: 54  IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI 113
           ++  E+D +   L + DTAGQE F  +   Y R   G L+VY VTD++SF ++  + + I
Sbjct: 51  LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLI 110
Query: 114 EQ-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK-TNLNVEEVFF 171
            +    ++   ILV NK D+    R V   +G+ +A +Y I + ETSAK   LNV++ F 
Sbjct: 111 LRVKDRESFPMILVANKVDL-MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH 169
Query: 172 SIARDIKQR 180
            + R I+Q+
Sbjct: 170 DLVRVIRQQ 178

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   ILVG K D+ +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 135 SK-----------RAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
            K             +   +G A+A E G +K+ E SA T   ++ VF
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 23  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 81
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   ILVG K D+ +
Sbjct: 82  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 140
Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEEVF 170
                     K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 141 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 188

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 89
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   ILVG K D+ +
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 148
Query: 135 SK-----------RAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
            K             +   +G A+A E G +K+ E SA T   ++ VF
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 89
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   ILVG K D+ +
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 148
Query: 135 SK-----------RAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
            K             +   +G A+A E G +K+ E SA T   ++ VF
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 64
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   ILVG K D+ +
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 123
Query: 135 SK-----------RAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
            K             +   +G A+A E G +K+ E SA T   ++ VF
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 72
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   ILVG K D+ +
Sbjct: 73  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 131
Query: 135 SK-----------RAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
            K             +   +G A+A E G +K+ E SA T   ++ VF
Sbjct: 132 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 179

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   ILVG K D+ +
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEEVF 170
                     K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   ILVG K D+ +
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 135 SK-----------RAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
            K             +   +G A+A E G +K+ E SA T   ++ VF
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 73.9 bits (180), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 71/125 (56%), Gaps = 3/125 (2%)
Query: 58  ELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-H 116
           E+D +   L + DTAGQE F  +   Y R   G L+VY VTD++SF ++  + + I +  
Sbjct: 60  EIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK 119
Query: 117 ASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK-TNLNVEEVFFSIAR 175
             ++   ILV NK D+    R V   +G+ +A +Y I + ETSAK   LNV++ F  + R
Sbjct: 120 DRESFPMILVANKVDL-MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178
Query: 176 DIKQR 180
            I+Q+
Sbjct: 179 VIRQQ 183

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 69
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   ILVG K D+ +
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 128
Query: 135 SK-----------RAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
            K             +   +G A+A E G +K+ E SA T   ++ VF
Sbjct: 129 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 176

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 66
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   ILVG K D+ +
Sbjct: 67  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 125
Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEEVF 170
                     K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 126 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 173

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   ILVG K D+ +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEEVF 170
                     K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   ILVG K D+ +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEEVF 170
                     K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADM-- 132
            +  +    Y      L+ + +   +SF N+R  W   +  H   +   +LVG K D+  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-HTPILLVGTKLDLRD 121
Query: 133 ---------DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
                    D+    +   +G A+A E G +K+ E SA T   ++ VF
Sbjct: 122 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 169

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 71/160 (44%), Gaps = 2/160 (1%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELD-GKRIKLQIWDTAGQE 75
           K+ LIGD GVGK+  + R                     T   D G  IK  +WDTAGQE
Sbjct: 13  KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           +   +   YY GA G +L +DVT   +  N+  W++  +    +    ++  NK D+   
Sbjct: 73  KKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNR 132
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR 175
           ++       + L  +   ++FE SAKT  N    F  +AR
Sbjct: 133 QKISKKLVMEVLKGK-NYEYFEISAKTAHNFGLPFLHLAR 171

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 2/124 (1%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI- 113
           + + L      L + DTAGQ+ +  +  ++  G  G +LVY VT   SF  I +  + + 
Sbjct: 63  KIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLH 122
Query: 114 EQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
           E H    V  +LVGNKAD+   +R V   +G+ LA+ +G  F E+SA+ N   + +F  +
Sbjct: 123 EGHGKTRVPVVLVGNKADLS-PEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKV 181
Query: 174 ARDI 177
            ++I
Sbjct: 182 IQEI 185

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 63
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADM-- 132
            +  +    Y      L+ + +   +SF N+R  W   +  H   +   +LVG K D+  
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-HTPILLVGTKLDLRD 122
Query: 133 ---------DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
                    D+    +   +G A+A E G +K+ E SA T   ++ VF
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 170

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 63
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADM-- 132
            +  +    Y      L+ + +   +SF N+R  W   +  H   +   +LVG K D+  
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-HTPILLVGTKLDLRD 122
Query: 133 ---------DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
                    D+    +   +G A+A E G +K+ E SA T   ++ VF
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 170

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAG E
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 65
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   ILVG K D+ +
Sbjct: 66  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 124
Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEEVF 170
                     K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 125 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 172

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 15/169 (8%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           LIK +++GD  VGK+CLL+                       + +DGK + L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 213
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMD 133
           E +  +    Y      L+ + +   +SF+++R  W   +  H   N   ILVG K D+ 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLR 272
Query: 134 E---------SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEEVF 170
           +          K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 75/168 (44%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +K +L+GD  VGK+ L++                       + +DG+ ++LQ+ DTAGQ+
Sbjct: 21  VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFS-AVVSVDGRPVRLQLCDTAGQD 79
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMDE 134
            F  +    Y      LL + V   SSF N+   W+  I  H       ILVG ++D+ E
Sbjct: 80  EFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLRE 138
Query: 135 -----------SKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEEVF 170
                       ++ VP    + LA+E     + E SA T  N++EVF
Sbjct: 139 DVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 15/169 (8%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           LIK +++GD  VGK+CLL+                       + +DGK + L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 213
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMD 133
           E +  +    Y      L+ + +   +SF+++R  W   +  H   N   ILVG K D+ 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLR 272
Query: 134 E---------SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEEVF 170
           +          K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 15/169 (8%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           LIK +++GD  VGK+CLL+                       + +DGK + L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 213
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMD 133
           E +  +    Y      L+ + +   +SF+++R  W   +  H   N   ILVG K D+ 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLR 272
Query: 134 E---------SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEEVF 170
           +          K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAG E
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 89
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   ILVG K D+ +
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 148
Query: 135 SK-----------RAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
            K             +   +G A+A E G +K+ E SA T   ++ VF
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 74/166 (44%), Gaps = 5/166 (3%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGK-RIKLQIWDTAGQ 74
           +K++++GD   GK+ L                      +R I L G   + LQIWD  GQ
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW---IRNIEQHASDNVNKILVGNKAD 131
                +   Y  GA G+LLVYD+T+  SF N+ +W   ++ + + +       LVGNK D
Sbjct: 67  TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126
Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
           + E  R +   K      E G      SAKT  +V   F  +A +I
Sbjct: 127 L-EHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 83/169 (49%), Gaps = 8/169 (4%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           + K+LL+G  GVGKS L                       R+I +DG+   L ++D   Q
Sbjct: 7   VYKVLLLGAPGVGKSALA--RIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQ 64
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSF---NNIRNWIRNIEQHASDNVNKILVGNKAD 131
           +  R +           ++VY VTD+ SF   + +R  +R   Q  +D+V  ILVGNK+D
Sbjct: 65  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ--TDDVPIILVGNKSD 122
Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           +  S R V   +G+A A  +  KF ETSA  + NV+ +F  + R I+ R
Sbjct: 123 LVRS-REVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 170

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 83/169 (49%), Gaps = 8/169 (4%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           + K+LL+G  GVGKS L                       R+I +DG+   L ++D   Q
Sbjct: 7   VYKVLLLGAPGVGKSALA--RIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQ 64
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSF---NNIRNWIRNIEQHASDNVNKILVGNKAD 131
           +  R +           ++VY VTD+ SF   + +R  +R   Q  +D+V  ILVGNK+D
Sbjct: 65  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ--TDDVPIILVGNKSD 122
Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           +  S R V   +G+A A  +  KF ETSA  + NV+ +F  + R I+ R
Sbjct: 123 LVRS-REVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 170

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 83/169 (49%), Gaps = 8/169 (4%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           + K+LL+G  GVGKS L                       R+I +DG+   L ++D   Q
Sbjct: 2   VYKVLLLGAPGVGKSALA--RIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQ 59
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSF---NNIRNWIRNIEQHASDNVNKILVGNKAD 131
           +  R +           ++VY VTD+ SF   + +R  +R   Q  +D+V  ILVGNK+D
Sbjct: 60  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ--TDDVPIILVGNKSD 117
Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           +  S R V   +G+A A  +  KF ETSA  + NV+ +F  + R I+ R
Sbjct: 118 LVRS-REVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 82/169 (48%), Gaps = 15/169 (8%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           ++K +++GD  VGK+CLL+                    + ++ + GK+  L ++DTAGQ
Sbjct: 18  MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV-SVTVGGKQYLLGLYDTAGQ 76
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADM- 132
           E +  +    Y      L+ + V + +SF N++  W+  ++++A  NV  +L+G + D+ 
Sbjct: 77  EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLR 135
Query: 133 ----------DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
                     D  ++ +   +GQ LA E G   + E SA T   ++ VF
Sbjct: 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 77/187 (41%), Gaps = 34/187 (18%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 64
Query: 76  RFRTITTAYYRGAMG-------------------ILLVYDVTDESSFNNIR-NWIRNIEQ 115
            +  +    Y   +G                    L+ + +   +SF N+R  W   +  
Sbjct: 65  DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 116 HASDNVNKILVGNKADMDESK-----------RAVPTSKGQALADEYG-IKFFETSAKTN 163
           H   N   ILVG K D+ + K             +   +G A+A E G +K+ E SA T 
Sbjct: 125 HCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 183
Query: 164 LNVEEVF 170
             ++ VF
Sbjct: 184 RGLKTVF 190

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +D K + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +S+ N+R  W   +  H   +   ILVG K D+ +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCP-STPIILVGTKLDLRD 121
Query: 135 ---------SKRAVPTS--KGQALADEY-GIKFFETSAKTNLNVEEVF 170
                     K+  P +  +G ALA E   +K+ E SA T   ++ VF
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 169

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 71/156 (45%), Gaps = 4/156 (2%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           ++ + G  GVGKS L+LR                  + + I  D     LQI DT G  +
Sbjct: 5   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQ 63
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD--NVNKILVGNKADMDE 134
           F  +           +LVY +T   S   ++     I +   D  ++  +LVGNK D   
Sbjct: 64  FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 123
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170
           S R V +S+ +ALA  +   F ETSAK N NV+E+F
Sbjct: 124 S-REVQSSEAEALARTWKCAFMETSAKLNHNVKELF 158

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +D K + L +WDTAGQE
Sbjct: 10  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 68
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +S+ N+R  W   +  H   +   ILVG K D+ +
Sbjct: 69  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCP-STPIILVGTKLDLRD 127
Query: 135 ---------SKRAVPTS--KGQALADEY-GIKFFETSAKTNLNVEEVF 170
                     K+  P +  +G ALA E   +K+ E SA T   ++ VF
Sbjct: 128 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 175

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +D K + L +WDTAGQE
Sbjct: 11  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 69
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDE 134
            +  +    Y      L+ + +   +S+ N+R  W   +  H   +   ILVG K D+ +
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCP-STPIILVGTKLDLRD 128
Query: 135 ---------SKRAVPTS--KGQALADEY-GIKFFETSAKTNLNVEEVF 170
                     K+  P +  +G ALA E   +K+ E SA T   ++ VF
Sbjct: 129 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 176

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + I  D     LQI DT G  +F  +           +LV+ VT + S   +    + I 
Sbjct: 47  QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIV 106
Query: 115 Q--HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170
           Q   + +++  +LVGNK D  E++R V T + QA+A E+   F ETSAK N NV+E+F
Sbjct: 107 QIKGSVEDIPVMLVGNKCD--ETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELF 162

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 86/171 (50%), Gaps = 12/171 (7%)
Query: 17  KLLLIGDSGVGKSCLL-LRXXXXXXXXXXXXXXXXXXKIRTIELDGKR---IKLQIWDTA 72
           +++LIG+ GVGKS L  +                     RT+ +DG+    I L +W+  
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSF---NNIRNWIRNIEQHASDNVNKILVGNK 129
           G+  +  +     +     L+VY +TD +SF   + +R  +R   Q  ++++  ILVGNK
Sbjct: 68  GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ--TEDIPIILVGNK 123
Query: 130 ADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           +D+    R V  S+G+A A  +  KF ETSA    NV+E+F  I R ++ R
Sbjct: 124 SDLVRC-REVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 173

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 86/171 (50%), Gaps = 12/171 (7%)
Query: 17  KLLLIGDSGVGKSCLL-LRXXXXXXXXXXXXXXXXXXKIRTIELDGKR---IKLQIWDTA 72
           +++LIG+ GVGKS L  +                     RT+ +DG+    I L +W+  
Sbjct: 39  RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 98
Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSF---NNIRNWIRNIEQHASDNVNKILVGNK 129
           G+  +  +     +     L+VY +TD +SF   + +R  +R   Q  ++++  ILVGNK
Sbjct: 99  GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ--TEDIPIILVGNK 154
Query: 130 ADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           +D+    R V  S+G+A A  +  KF ETSA    NV+E+F  I R ++ R
Sbjct: 155 SDLVRC-REVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 204

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 12/171 (7%)
Query: 17  KLLLIGDSGVGKSCLL-LRXXXXXXXXXXXXXXXXXXKIRTIELDGKR---IKLQIWDTA 72
           +++LIG+ GVGKS L  +                     RT+ +DG+    I L +W+  
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSF---NNIRNWIRNIEQHASDNVNKILVGNK 129
           G+  +  +     +     L+VY +TD +SF   + +R  +R   Q  ++++  ILVGNK
Sbjct: 68  GENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ--TEDIPIILVGNK 123
Query: 130 ADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           +D+    R V  S+G+A A  +  KF ETSA    NV+E+F  I R ++ R
Sbjct: 124 SDL-VRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 173

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 88/176 (50%), Gaps = 22/176 (12%)
Query: 17  KLLLIGDSGVGKSCLL-LRXXXXXXXXXXXXXXXXXXKIRTIELDGKR---IKLQIWDTA 72
           +++LIG+ GVGKS L  +                     RT+ +DG+    I L +W+  
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 73  GQERF-----RTITTAYYRGAMGILLVYDVTDESSF---NNIRNWIRNIEQHASDNVNKI 124
           G+  +       +  AY       L+VY +TD +SF   + +R  +R   Q  ++++  I
Sbjct: 68  GENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQ--TEDIPII 118
Query: 125 LVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           LVGNK+D+    R V  S+G+A A  +  KF ETSA    NV+E+F  I R ++ R
Sbjct: 119 LVGNKSDL-VRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLR 173

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 5/158 (3%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +K++++GD  VGK+CLLL                       ++   +   L +WDTAGQE
Sbjct: 24  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQE 82
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADM-D 133
            +  +    Y  +  +LL + V + +SF+NI   W   I +H  D    +LVG K D+  
Sbjct: 83  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEI-KHYIDTAKTVLVGLKVDLRK 141
Query: 134 ESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
           +    V   +G  L  + G + + E S+   + + EVF
Sbjct: 142 DGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 179

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 5/158 (3%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +K++++GD  VGK+CLLL                       ++   +   L +WDTAGQE
Sbjct: 23  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQE 81
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADM-D 133
            +  +    Y  +  +LL + V + +SF+NI   W   I +H  D    +LVG K D+  
Sbjct: 82  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEI-KHYIDTAKTVLVGLKVDLRK 140
Query: 134 ESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
           +    V   +G  L  + G + + E S+   + + EVF
Sbjct: 141 DGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 178

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVXIGGEPYTLGLFDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 121
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 78/161 (48%), Gaps = 9/161 (5%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L +++L+GD GVGK+ L                     + RT+ +DG+   L + DT   
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYE-RTLTVDGEDTTLVVVDTWEA 62
Query: 75  ERFRTITT--AYYRGAMGILLVYDVTDESSFNN---IRNWIRNIEQHASDNVNKILVGNK 129
           E+     +  +  +G    ++VY + D  SF +   +R  +R    H +D+V  ILVGNK
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRT--HQADHVPIILVGNK 120
Query: 130 ADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170
           AD+    R V   +G+A A  +  KF ETSA    NV E+F
Sbjct: 121 ADLARC-REVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 121
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 64
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 65  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 123
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 124 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 63
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 64  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 122
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 123 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 170

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 121
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 65
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 124
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 73/159 (45%), Gaps = 11/159 (6%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           K+ ++G   VGKS L ++                    + I ++G+   LQ+ DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 66
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKI-----LVGNKAD 131
           +      Y     G +LVY VT   SF      I+ I     D V K+     LVGNK D
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSF----EVIKVIHGKLLDMVGKVQIPIMLVGNKKD 122
Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170
           +   +R +   +G+ALA+ +   F E+SAK N    +VF
Sbjct: 123 L-HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 160

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 121
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 73/159 (45%), Gaps = 11/159 (6%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           K+ ++G   VGKS L ++                    + I ++G+   LQ+ DTAGQ+ 
Sbjct: 6   KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 64
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKI-----LVGNKAD 131
           +      Y     G +LVY VT   SF      I+ I     D V K+     LVGNK D
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSF----EVIKVIHGKLLDMVGKVQIPIMLVGNKKD 120
Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170
           +   +R +   +G+ALA+ +   F E+SAK N    +VF
Sbjct: 121 L-HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 158

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 73/159 (45%), Gaps = 11/159 (6%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           K+ ++G   VGKS L ++                    + I ++G+   LQ+ DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 66
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKI-----LVGNKAD 131
           +      Y     G +LVY VT   SF      I+ I     D V K+     LVGNK D
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSF----EVIKVIHGKLLDMVGKVQIPIMLVGNKKD 122
Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170
           +   +R +   +G+ALA+ +   F E+SAK N    +VF
Sbjct: 123 L-HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 160

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 72
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 73  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 131
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 132 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 179

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 121
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 65
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 124
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 121
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 128
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 121
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 73/159 (45%), Gaps = 11/159 (6%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           K+ ++G   VGKS L ++                    + I ++G+   LQ+ DTAGQ+ 
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 61
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKI-----LVGNKAD 131
           +      Y     G +LVY VT   SF      I+ I     D V K+     LVGNK D
Sbjct: 62  YSIFPQTYSIDINGYILVYSVTSIKSF----EVIKVIHGKLLDMVGKVQIPIMLVGNKKD 117
Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170
           +   +R +   +G+ALA+ +   F E+SAK N    +VF
Sbjct: 118 L-HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 155

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 64
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 65  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 123
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 124 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 66
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 125
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 121
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 121
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 121
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 121
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 128
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L + DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLRDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 121
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 71/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAG E
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLE 66
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 125
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 71/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 121
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 75/173 (43%), Gaps = 13/173 (7%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKL---QIW-- 69
           + K++L+G+SGVGKS L                       R I +D + + L    IW  
Sbjct: 23  IFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQ 82
Query: 70  -DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVG 127
            D  G  R   + T         L+V+ VTD  SF+ +    +R        ++  ILVG
Sbjct: 83  GDAGGWLRDHCLQTGD-----AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVG 137
Query: 128 NKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           NK+D+  S R V   +G+ LA     K  ETSA  + N  E+F    R I+ R
Sbjct: 138 NKSDLARS-REVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 189

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 75/168 (44%), Gaps = 3/168 (1%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           + K++L+G+SGVGKS L                       R I +D + + L ++D   Q
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 75  -ERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADM 132
            +    +     +     L+V+ VTD  SF+ +    +R        ++  ILVGNK+D+
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 121
Query: 133 DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
             S R V   +G+ LA     K  ETSA  + N  E+F    R I+ R
Sbjct: 122 ARS-REVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 75/173 (43%), Gaps = 13/173 (7%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKL---QIW-- 69
           + K++L+G+SGVGKS L                       R I +D + + L    IW  
Sbjct: 12  VFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 71
Query: 70  -DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVG 127
            D  G  +   + T         L+V+ VTD  SF+ +    +R        ++  ILVG
Sbjct: 72  GDAGGWLQDHCLQTGD-----AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVG 126
Query: 128 NKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           NK+D+  S R V   +G+ LA     K  ETSA  + N  E+F    R I+ R
Sbjct: 127 NKSDLARS-REVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 178

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 15/171 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           K++++GDS  GK+  LL                      + E+D +RI+L +WDT+G   
Sbjct: 30  KIVVVGDSQCGKT-ALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 88
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMD-- 133
           +  +    Y  +  +L+ +D++   + +++ + W   I++    N   +LVG K+D+   
Sbjct: 89  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTD 147
Query: 134 -------ESKRAVPTS--KGQALADEYGIK-FFETSAKTNLNVEEVFFSIA 174
                   + R  P S  +G  +A + G   + E SA  + N     F +A
Sbjct: 148 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 198

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 15/171 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           K++++GDS  GK+  LL                      + E+D +RI+L +WDT+G   
Sbjct: 25  KIVVVGDSQCGKT-ALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 83
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMD-- 133
           +  +    Y  +  +L+ +D++   + +++ + W   I++    N   +LVG K+D+   
Sbjct: 84  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTD 142
Query: 134 -------ESKRAVPTS--KGQALADEYGIK-FFETSAKTNLNVEEVFFSIA 174
                   + R  P S  +G  +A + G   + E SA  + N     F +A
Sbjct: 143 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 193

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 73/175 (41%), Gaps = 8/175 (4%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIR----TIELDGKRIKLQIWDTA 72
           K+ ++G++ VGKS L+                    ++     TI      ++L + DTA
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN---VNKILVGNK 129
           G + ++   + Y+ G    +LV+DV+   SF + + W   ++    D    +  +LV NK
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141
Query: 130 ADMDESKRAVPTSKGQALADEYGIKFFETSA-KTNLNVEEVFFSIARDIKQRLAD 183
            D+   +  V     Q  A    + FF+ SA     + +  F SIA    +   D
Sbjct: 142 TDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYED 196

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 15/171 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           K++++GDS  GK+  LL                      + E+D +RI+L +WDT+G   
Sbjct: 9   KIVVVGDSQCGKT-ALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 67
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMD-- 133
           +  +    Y  +  +L+ +D++   + +++ + W   I++    N   +LVG K+D+   
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTD 126
Query: 134 -------ESKRAVPTS--KGQALADEYGIK-FFETSAKTNLNVEEVFFSIA 174
                   + R  P S  +G  +A + G   + E SA  + N     F +A
Sbjct: 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 177

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 7/168 (4%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           + L ++G  G GKS L ++                        +D + + L++ DTA  +
Sbjct: 22  VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEET-VDHQPVHLRVMDTADLD 80
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD---NVNKILVGNKADM 132
             R     Y   A   L+VY V    SF++  +++  +  HA +   ++  +L+GNK DM
Sbjct: 81  TPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDM 139
Query: 133 DESKRAVPTSKGQALADEYGIKFFETSAKTNL-NVEEVFFSIARDIKQ 179
            +  R V  ++G ALA  +G  FFE SA  +  +V+ VF    R+ ++
Sbjct: 140 AQY-RQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARR 186

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 6/133 (4%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G  G GK+ +L +                   + T++   K I   +WD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGF---NVETVQY--KNISFTVWDVGGQD 72
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDNVNKILVGNKADMDE 134
           R R++   YYR   G++ V D  D S     R  + R + +    N   ++  NK D+ E
Sbjct: 73  RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPE 132
Query: 135 SKRAVPTSKGQAL 147
           +  A   ++   L
Sbjct: 133 AMSAAEITEKLGL 145

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 6/133 (4%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G  G GK+ +L +                   + T++   K I   +WD  GQ+
Sbjct: 1   MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGF---NVETVQY--KNISFTVWDVGGQD 55
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDNVNKILVGNKADMDE 134
           R R++   YYR   G++ V D  D S     R  + R + +    N   ++  NK D+ E
Sbjct: 56  RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPE 115
Query: 135 SKRAVPTSKGQAL 147
           +  A   ++   L
Sbjct: 116 AMSAAEITEKLGL 128

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 6/133 (4%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G  G GK+ +L +                   + T++   K I   +WD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGF---NVETVQY--KNISFTVWDVGGQD 72
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDNVNKILVGNKADMDE 134
           R R++   YYR   G++ V D  D S     R  + R + +    N   ++  NK D+ E
Sbjct: 73  RIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPE 132
Query: 135 SKRAVPTSKGQAL 147
           +  A   ++   L
Sbjct: 133 AMSAAEITEKLGL 145

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 76/172 (44%), Gaps = 18/172 (10%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+L+GD   GK+  +L+                      +E + +R++L +WDT+G   
Sbjct: 13  KLVLVGDVQCGKT-AMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 71
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNN-IRNWIRNIEQHASDNVNKILVGNKADM--- 132
           +  +    Y  +  +LL +D++   + ++ ++ W   I  +   +   +L+G K D+   
Sbjct: 72  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCKTDLRTD 130
Query: 133 --------DESKRAVPTSKGQALADEYGIK-FFETSAKTNLNVEEVFFSIAR 175
                    + +  +   +G A+A + G + + E SA T+   E+   SI R
Sbjct: 131 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS---EKSIHSIFR 179

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 76/172 (44%), Gaps = 18/172 (10%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+L+GD   GK+  +L+                      +E + +R++L +WDT+G   
Sbjct: 12  KLVLVGDVQCGKT-AMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 70
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNN-IRNWIRNIEQHASDNVNKILVGNKADM--- 132
           +  +    Y  +  +LL +D++   + ++ ++ W   I  +   +   +L+G K D+   
Sbjct: 71  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCKTDLRTD 129
Query: 133 --------DESKRAVPTSKGQALADEYGIK-FFETSAKTNLNVEEVFFSIAR 175
                    + +  +   +G A+A + G + + E SA T+   E+   SI R
Sbjct: 130 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS---EKSIHSIFR 178

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 76/172 (44%), Gaps = 18/172 (10%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+L+GD   GK+  +L+                      +E + +R++L +WDT+G   
Sbjct: 29  KLVLVGDVQCGKT-AMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 87
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNN-IRNWIRNIEQHASDNVNKILVGNKADM--- 132
           +  +    Y  +  +LL +D++   + ++ ++ W   I  +   +   +L+G K D+   
Sbjct: 88  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCKTDLRTD 146
Query: 133 --------DESKRAVPTSKGQALADEYGIK-FFETSAKTNLNVEEVFFSIAR 175
                    + +  +   +G A+A + G + + E SA T+   E+   SI R
Sbjct: 147 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS---EKSIHSIFR 195

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 64  IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRN-IEQHASDNVN 122
           + ++IWD  GQ RFR++   Y RG   I+ + D  D       RN + N +++     + 
Sbjct: 67  VTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIP 126
Query: 123 KILVGNKADM 132
            +++GNK D+
Sbjct: 127 VLVLGNKRDL 136

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 8/134 (5%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIR--TIELDGKR---IKLQIWDT 71
           KL ++G++G GK+ LL +                   ++   I++  KR   + L +WD 
Sbjct: 2   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTD-ESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130
           AG+E F +    +       L VYD++  ++  +  + W+ NI+  AS +   ILVG   
Sbjct: 62  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVILVGTHL 120
Query: 131 DM-DESKRAVPTSK 143
           D+ DE +R    SK
Sbjct: 121 DVSDEKQRKACXSK 134

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 64  IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRN-IEQHASDNVN 122
           + +++WD  GQ RFR++   Y RG   I+ + D  D+      +N + N +++     + 
Sbjct: 67  VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP 126
Query: 123 KILVGNKADM 132
            +++GNK D+
Sbjct: 127 VLVLGNKRDL 136

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 8/134 (5%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIR--TIELDGKR---IKLQIWDT 71
           KL ++G++G GK+ LL +                   ++   I++  KR   + L +WD 
Sbjct: 4   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTD-ESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130
           AG+E F +    +       L VYD++  ++  +  + W+ NI+  AS +   ILVG   
Sbjct: 64  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVILVGTHL 122
Query: 131 DM-DESKRAVPTSK 143
           D+ DE +R    SK
Sbjct: 123 DVSDEKQRKACXSK 136

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 64  IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRN-IEQHASDNVN 122
           + +++WD  GQ RFR++   Y RG   I+ + D  D+      +N + N +++     + 
Sbjct: 76  VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP 135
Query: 123 KILVGNKADM 132
            +++GNK D+
Sbjct: 136 VLVLGNKRDL 145

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI--EQHASD 119
           K +K  +WD  GQ++ R +   YY G  G++ V D  D    +  R  +  I  ++   D
Sbjct: 364 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 423
Query: 120 NVNKILVGNKADMDESKR 137
            +  ++  NK D+ ++ +
Sbjct: 424 AI-ILIFANKQDLPDAMK 440

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 6/133 (4%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G  G GK+ +L +                   ++        I   +WD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVECVQYC-----NISFTVWDVGGQD 72
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDNVNKILVGNKADMDE 134
           R R++   YY    G++ V D  D S     R  + R + +    N   ++  NK D+ E
Sbjct: 73  RIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFANKQDLPE 132
Query: 135 SKRAVPTSKGQAL 147
           +  A   ++   L
Sbjct: 133 AMSAAEITEKLGL 145

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDN 120
           K +K  +WD  GQ++ R +   YY G  G++ V D  D    +  R  + R I      +
Sbjct: 42  KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRD 101
Query: 121 VNKILVGNKADMDESKRA 138
              ++  NK D+ ++ + 
Sbjct: 102 AIILIFANKQDLPDAXKP 119

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI--EQHASD 119
           K +K  +WD  GQ++ R +   YY G  G++ V D  D    +  R  +  I  ++   D
Sbjct: 54  KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 113
Query: 120 NVNKILVGNKADMDESKRA 138
            +  ++  NK D+ ++ + 
Sbjct: 114 AI-ILIFANKQDLPDAMKP 131

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI--EQHASD 119
           K +K  +WD  GQ++ R +   YY G  G++ V D  D    +  R  +  I  ++   D
Sbjct: 55  KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 114
Query: 120 NVNKILVGNKADMDESKRA 138
            +  ++  NK D+ ++ + 
Sbjct: 115 AI-ILIFANKQDLPDAMKP 132

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI--EQHASD 119
           K +K  +WD  GQ++ R +   YY G  G++ V D  D    +  R  +  I  ++   D
Sbjct: 42  KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 101
Query: 120 NVNKILVGNKADMDESKRA 138
            +  ++  NK D+ ++ + 
Sbjct: 102 AI-ILIFANKQDLPDAMKP 119

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI--EQHASD 119
           K +K  +WD  GQ++ R +   YY G  G++ V D  D    +  R  +  I  ++   D
Sbjct: 42  KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 101
Query: 120 NVNKILVGNKADMDESKRA 138
            +  ++  NK D+ ++ + 
Sbjct: 102 AI-ILIFANKQDLPDAMKP 119

>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/170 (21%), Positives = 67/170 (39%), Gaps = 12/170 (7%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G  G GK+ +L R                   + T+    K +K Q+WD  GQ 
Sbjct: 3   MRILILGLDGAGKTTILYRLQVGEVVTTIPTIGF---NVETVTY--KNLKFQVWDLGGQT 57
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADMDE 134
             R     YY     ++ V D  D       ++  +  +E+        ++  NK DM++
Sbjct: 58  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 117
Query: 135 SKRAVPTSKGQALA----DEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           +    P+    AL      +   + F+TSA     ++E    +   +K R
Sbjct: 118 A--MTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 165

>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3 Length = 184

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 71/165 (43%), Gaps = 10/165 (6%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +K+ ++G+   GKS L+ R                  K   I +DG+   L I D  G  
Sbjct: 21  LKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKK--EIVVDGQSYLLLIRDEGGPP 78
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW-IRNIEQHASDNVNKILVGNKADMDE 134
             +     +      ++ V+ + DE SF  + N+ +R      +  V  +LVG +  +  
Sbjct: 79  ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISA 133
Query: 135 S-KRAVPTSKGQALA-DEYGIKFFETSAKTNLNVEEVFFSIARDI 177
           +  R +  S+ + L+ D     ++ET A   LNVE VF  +A+ +
Sbjct: 134 ANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKV 178

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	216
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	1e-124
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	1e-123
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-122
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	1e-121
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	1e-121
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	1e-121
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	1e-121
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	1e-121
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	1e-121
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	1e-120
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	1e-120
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	1e-120
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	1e-120
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	1e-120
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	1e-119
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	1e-119
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-119
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	1e-118
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	1e-118
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	1e-117
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	1e-116
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	1e-116
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	1e-115
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	1e-115
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	1e-115
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	1e-115
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	1e-115
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	1e-114
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	1e-114
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-113
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	1e-110
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	1e-110
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	1e-109
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	1e-108
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	1e-108
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	1e-108
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	1e-108
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	1e-107
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	1e-107
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	1e-106
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	1e-104
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	1e-102
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	2e-99
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	3e-99
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	1e-96
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	1e-95
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	1e-95
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	3e-94
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	7e-93
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	8e-93
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	4e-92
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	2e-91
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	5e-91
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	1e-90
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	1e-90
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	1e-90
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	5e-90
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	5e-90
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	9e-90
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	1e-88
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	5e-88
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	1e-87
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	2e-86
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	1e-85
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	3e-82
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	2e-81
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	2e-80
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	2e-80
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	5e-74
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	7e-66
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	4e-64
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	7e-57
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	1e-56
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	1e-55
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	2e-53
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	7e-52
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	9e-51
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	1e-49
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	1e-49
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	4e-49
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	6e-49
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	8e-49
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	4e-47
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	4e-47
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	3e-30
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	6e-25
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	7e-18
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	1e-17
3llu_A	196	RAS-related GTP-binding protein C; structural geno	2e-17
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	2e-17
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	2e-17
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	4e-17
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	4e-17
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	7e-17
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	7e-17
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	7e-16
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	7e-16
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	1e-15
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	1e-14
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	6e-13
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	6e-13
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	1e-12
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-12
2fh5_B	214	SR-beta, signal recognition particle receptor beta	9e-12
2ged_A	193	SR-beta, signal recognition particle receptor beta	9e-11
1nrj_B	218	SR-beta, signal recognition particle receptor beta	3e-10
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	9e-10
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	1e-05
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	2e-05
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	2e-05
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	3e-05
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	3e-05
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	7e-05
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	7e-04

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  349 bits (897), Expect = e-124
 Identities = 104/204 (50%), Positives = 143/204 (70%), Gaps = 1/204 (0%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           +YDYL KLLLIG+SGVGKSCLLLRFSD ++T  +I+TIG+DFKI+T+ELDGK +KLQIWD
Sbjct: 4   EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 63

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130
           TAGQERFRTIT++YYRG+ GI++VYDVTD+ SFN ++ W++ I+++A+  V K+LVGNK 
Sbjct: 64  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 123

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEP 190
           D+ + KR V     +  AD   + F ETSA  + NVE+ F ++AR IK+ ++  +     
Sbjct: 124 DL-KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETT 182

Query: 191 QTIKINQPDQAGGAAQAAQRSACC 214
           Q  +        G +       CC
Sbjct: 183 QKKEDKGNVNLKGQSLTNTGGCCC 206

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  346 bits (890), Expect = e-123
 Identities = 94/203 (46%), Positives = 138/203 (67%), Gaps = 1/203 (0%)

Query: 8   ARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQ 67
               +DY+ K+L+IG+S VGK+  L R++D SFT +F++T+GIDFK++TI  + KRIKLQ
Sbjct: 1   GSHMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQ 60

Query: 68  IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVG 127
           IWDTAG ER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   +LVG
Sbjct: 61  IWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVG 120

Query: 128 NKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSR 187
           NK DM E +R V + +G+ LAD  G +FFE SAK N+NV++ F  +   I ++++++   
Sbjct: 121 NKCDM-EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDT 179

Query: 188 AEPQTIKINQPDQAGGAAQAAQR 210
           A+P      Q  Q         +
Sbjct: 180 ADPAVTGAKQGPQLTDQQAPPHQ 202

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  342 bits (880), Expect = e-122
 Identities = 115/196 (58%), Positives = 149/196 (76%), Gaps = 3/196 (1%)

Query: 1   MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
                +    +YDYL KLLLIGDSGVGKSCLLLRF+D ++T S+I+TIG+DFKIRTIELD
Sbjct: 2   PLGSMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD 61

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
           GK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+N
Sbjct: 62  GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN 121

Query: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           VNK+LVGNK D+  +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R
Sbjct: 122 VNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 180

Query: 181 LAD--TDSRAEPQTIK 194
           +    T   AE   +K
Sbjct: 181 MGPGATAGGAEKSNVK 196

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  341 bits (878), Expect = e-121
 Identities = 92/179 (51%), Positives = 128/179 (71%), Gaps = 1/179 (0%)

Query: 5   PARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRI 64
                   DY+ KLLLIG+S VGK+  L R++D SFT +F++T+GIDFK++T+    KRI
Sbjct: 12  SGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRI 71

Query: 65  KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKI 124
           KLQIWDTAGQER+RTITTAYYRGAMG LL+YD+ ++ SF  +++W   I+ ++ DN   I
Sbjct: 72  KLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVI 131

Query: 125 LVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD 183
           LVGNK D+ E +R VP   G+ LAD+ G +FFE SAK N+NV++VF  +   I +++ +
Sbjct: 132 LVGNKCDL-EDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNE 189

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  341 bits (877), Expect = e-121
 Identities = 123/174 (70%), Positives = 148/174 (85%), Gaps = 1/174 (0%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
            YDYL KLLLIGDSGVGK+C+L RFS+ +F ++FI+TIGIDFKIRTIELDGKRIKLQIWD
Sbjct: 4   TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 63

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130
           TAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK 
Sbjct: 64  TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKC 123

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADT 184
           D+   KR V   +G+ LA +YGIKF ETSAK N+NVE  FF++ARDIK ++   
Sbjct: 124 DV-NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKN 176

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  342 bits (880), Expect = e-121
 Identities = 106/207 (51%), Positives = 146/207 (70%), Gaps = 2/207 (0%)

Query: 1   MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
             +  +     YD ++K+LLIGDSGVGKSCLL+RF +  F  SFITTIGIDFKI+T++++
Sbjct: 6   TVSASSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDIN 65

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
           GK++KLQ+WDTAGQERFRTITTAYYRGAMGI+LVYDVTDE +F NI+ W + + +HA+D 
Sbjct: 66  GKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDE 125

Query: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
              +LVGNK+DM+   R V   +G+ALA E GI F E+SAK + NV E+FF++A+ I+++
Sbjct: 126 AQLLLVGNKSDME--TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 183

Query: 181 LADTDSRAEPQTIKINQPDQAGGAAQA 207
           +            + N    +G    +
Sbjct: 184 IDSNKLVGVGNGKEGNISINSGSGNSS 210

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  341 bits (876), Expect = e-121
 Identities = 93/178 (52%), Positives = 133/178 (74%), Gaps = 1/178 (0%)

Query: 7   RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKL 66
             + ++DY+ KLL+IG+S VGK+  L R++D +FT +F++T+GIDFK++T+    KR+KL
Sbjct: 15  YFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKL 74

Query: 67  QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILV 126
           QIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   ILV
Sbjct: 75  QIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILV 134

Query: 127 GNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADT 184
           GNK DM E +R VPT KGQ LA++ G  FFE SAK N++V + F  +   I  +++D+
Sbjct: 135 GNKCDM-EEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDS 191

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  341 bits (876), Expect = e-121
 Identities = 81/179 (45%), Positives = 121/179 (67%), Gaps = 1/179 (0%)

Query: 5   PARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRI 64
           P  +  DYD+L K++LIG++GVGK+CL+ RF+ G F      TIG+DF I+T+E++G+++
Sbjct: 16  PRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKV 75

Query: 65  KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKI 124
           KLQIWDTAGQERFR+IT +YYR A  ++L YD+T E SF  +  W+R IEQ+AS+ V  +
Sbjct: 76  KLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITV 135

Query: 125 LVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD 183
           LVGNK D+   +R V   + +  ++   + + ETSAK + NVE++F  +A  +      
Sbjct: 136 LVGNKIDL-AERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQ 193

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  340 bits (873), Expect = e-121
 Identities = 112/182 (61%), Positives = 145/182 (79%), Gaps = 1/182 (0%)

Query: 1   MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
              P +    +YDYL KLLLIGDSGVGKSCLLLRF+D ++T S+I+TIG+DFKIRTIELD
Sbjct: 19  QGRPMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD 78

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
           GK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+N
Sbjct: 79  GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN 138

Query: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           VNK+LVGNK D+  +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R
Sbjct: 139 VNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 197

Query: 181 LA 182
           + 
Sbjct: 198 MG 199

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  338 bits (869), Expect = e-120
 Identities = 98/179 (54%), Positives = 132/179 (73%), Gaps = 2/179 (1%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           DYD+L KLL+IGDSGVGKS LLLRF+D +F+ S+ITTIG+DFKIRT+E++G+++KLQIWD
Sbjct: 5   DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWD 64

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130
           TAGQERFRTIT+ YYRG  G+++VYDVT   SF N++ W+  I Q+  D+V +ILVGNK 
Sbjct: 65  TAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKN 123

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAE 189
           D    ++ V T      A + GI+ FETSAK N+NVEE+F  I   + +   D  ++ +
Sbjct: 124 DD-PERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQQ 181

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  338 bits (870), Expect = e-120
 Identities = 82/185 (44%), Positives = 115/185 (62%), Gaps = 6/185 (3%)

Query: 2   AAPPARARA-DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
             P   A++       K++L GD+ VGKS  L+R     F  +   T+G+DF+++T+ +D
Sbjct: 14  LVPRGSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVD 73

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
           G+R  LQ+WDTAGQERFR+I  +Y+R A G+LL+YDVT E SF NIR W+  IE  A + 
Sbjct: 74  GERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHET 133

Query: 121 VNKILVGNKADMD-----ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR 175
           V  +LVGNKAD+      E ++ VP   G+ LA  YG  F ETSAK   N+ E    +AR
Sbjct: 134 VPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAR 193

Query: 176 DIKQR 180
           ++K+R
Sbjct: 194 EVKKR 198

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  338 bits (868), Expect = e-120
 Identities = 89/175 (50%), Positives = 130/175 (74%), Gaps = 2/175 (1%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIW 69
            YD   K++L+GDSGVGK+CLL+RF DG+F   +FI+T+GIDF+ + +++DG ++KLQ+W
Sbjct: 6   FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMW 65

Query: 70  DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNK 129
           DTAGQERFR++T AYYR A  +LL+YDVT+++SF+NI+ W+  I ++A  +V  +L+GNK
Sbjct: 66  DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNK 125

Query: 130 ADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADT 184
            D    +R V    G+ LA EYG+ F ETSAKT LNV+  F +IA+++K+R    
Sbjct: 126 VDS-AHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMKA 179

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  338 bits (868), Expect = e-120
 Identities = 79/178 (44%), Positives = 128/178 (71%), Gaps = 2/178 (1%)

Query: 5   PARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRI 64
           P  +    D+ +++++IG  GVGK+ L+ RF+D +F  +  +T+G+DFKI+T+EL GK+I
Sbjct: 16  PRGSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKI 75

Query: 65  KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKI 124
           +LQIWDTAGQERF +IT+AYYR A GI+LVYD+T + +F+++  W++ I+++AS++   +
Sbjct: 76  RLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELL 135

Query: 125 LVGNKADMDESKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEEVFFSIARDIKQRL 181
           LVGNK D  E+ R +   +G+  A +  G++F E SAK N NV+E+F  +  DI +++
Sbjct: 136 LVGNKLDC-ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  337 bits (867), Expect = e-120
 Identities = 75/177 (42%), Positives = 115/177 (64%), Gaps = 1/177 (0%)

Query: 6   ARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIK 65
            R   DY+++ K++LIG+SGVGK+ LL RF+   F+    TTIG++F  RT+ L    +K
Sbjct: 16  PRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVK 75

Query: 66  LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKIL 125
            QIWDTAG ER+R IT+AYYRGA+G LLV+D+T   ++  +  W++ +  HA   +  +L
Sbjct: 76  AQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVML 135

Query: 126 VGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA 182
           VGNK+D+    R VPT + +  A+  G+ F ETSA  + NVE  F ++ ++I  +++
Sbjct: 136 VGNKSDL-SQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVS 191

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  336 bits (864), Expect = e-119
 Identities = 89/171 (52%), Positives = 125/171 (73%), Gaps = 1/171 (0%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
              YL K ++IGD+GVGKSCLLL+F+D  F      TIG++F  R + +DGK+IKLQIWD
Sbjct: 17  RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWD 76

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130
           TAGQE FR+IT +YYRGA G LLVYD+T   +FN++ +W+ +  QH+S N+  +L+GNK+
Sbjct: 77  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKS 136

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 181
           D+ ES+R V   +G+A A E+G+ F ETSAKT  NVEE F + A++I +++
Sbjct: 137 DL-ESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKI 186

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  336 bits (863), Expect = e-119
 Identities = 83/181 (45%), Positives = 124/181 (68%), Gaps = 2/181 (1%)

Query: 1   MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
           +          YD+L KL+L+GD+ VGK+C++ RF  G+F+    +TIG+DF ++T+E+ 
Sbjct: 15  VPRGSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQ 74

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
           GKR+KLQIWDTAGQERFRTIT +YYR A G +L YD+T  SSF ++ +WI ++ ++A  N
Sbjct: 75  GKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSN 134

Query: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIK-FFETSAKTNLNVEEVFFSIARDIKQ 179
           + ++L+GNK+D+    R V  ++ Q+LA+ Y I    ETSAK + NVEE F  +A ++  
Sbjct: 135 IVQLLIGNKSDL-SELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIM 193

Query: 180 R 180
           R
Sbjct: 194 R 194

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  334 bits (860), Expect = e-119
 Identities = 81/195 (41%), Positives = 117/195 (60%), Gaps = 3/195 (1%)

Query: 2   AAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG 61
           ++  +    D    +K+L+IG+SGVGKS LLLRF+D +F      TIG+DFK++TI +DG
Sbjct: 2   SSGSSGMDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDG 61

Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN- 120
            + KL IWDTAGQERFRT+T +YYRGA G++LVYDVT   +F  + NW+  +E + + N 
Sbjct: 62  NKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRND 121

Query: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           +  +LVGNK D +   R V  ++G   A ++ + F E SAKT   V+  F  +   I Q 
Sbjct: 122 IVNMLVGNKIDKE--NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT 179

Query: 181 LADTDSRAEPQTIKI 195
               +S  +      
Sbjct: 180 PGLWESENQNSGPSS 194

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  332 bits (853), Expect = e-118
 Identities = 103/171 (60%), Positives = 138/171 (80%), Gaps = 2/171 (1%)

Query: 13  DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTA 72
           D ++K+LLIGDSGVGKSCLL+RF +  F  SFITTIGIDFKI+T++++GK++KLQIWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60

Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADM 132
           GQERFRTITTAYYRGAMGI+LVYD+TDE +F NI+ W + + +HA+D    +LVGNK+DM
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120

Query: 133 DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD 183
           +   R V   +G+ALA E GI F E+SAK + NV E+FF++A+ I++++  
Sbjct: 121 E--TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  333 bits (855), Expect = e-118
 Identities = 86/194 (44%), Positives = 130/194 (67%), Gaps = 12/194 (6%)

Query: 6   ARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD----- 60
           + +  DYDYLIK L +GDSGVGK+ +L +++DG F + FITT+GIDF+ + +        
Sbjct: 2   SMSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPD 61

Query: 61  -----GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ 115
                G+RI LQ+WDTAG ERFR++TTA++R AMG LL++D+T+E SF N+RNWI  ++ 
Sbjct: 62  GAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQM 121

Query: 116 HA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA 174
           HA S+N + +L GNK+D+ E +RAV   + + LA++YGI +FETSA    N+      + 
Sbjct: 122 HAYSENPDIVLCGNKSDL-EDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLL 180

Query: 175 RDIKQRLADTDSRA 188
             I +R+  +  ++
Sbjct: 181 DLIMKRMERSVDKS 194

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  331 bits (850), Expect = e-117
 Identities = 77/181 (42%), Positives = 111/181 (61%), Gaps = 6/181 (3%)

Query: 4   PPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR 63
                R     + K+++IGDS VGK+CL  RF  G F      TIG+DF+ R +++DG+R
Sbjct: 9   GSLVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGER 68

Query: 64  IKLQIWDTAGQERFR-TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN-V 121
           IK+Q+WDTAGQERFR ++   YYR    ++ VYD+T+ +SF+++  WI   +QH   N +
Sbjct: 69  IKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDI 128

Query: 122 NKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT---NLNVEEVFFSIARDIK 178
            +ILVGNK D+  S   VPT   Q  AD + +  FETSAK    N +VE +F ++A  +K
Sbjct: 129 PRILVGNKCDL-RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187

Query: 179 Q 179
            
Sbjct: 188 S 188

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  329 bits (846), Expect = e-116
 Identities = 79/180 (43%), Positives = 108/180 (60%), Gaps = 1/180 (0%)

Query: 2   AAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG 61
           +    R     D+L K L+IG +G GKSCLL +F +  F      TIG++F  R + + G
Sbjct: 12  SGLVPRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGG 71

Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNV 121
           K +KLQIWDTAGQERFR++T +YYRGA G LLVYD+T   ++N++  W+ +    AS N+
Sbjct: 72  KTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNI 131

Query: 122 NKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 181
             IL GNK D+ + +R V   +    A E  + F ETSA T  NVEE F   AR I  ++
Sbjct: 132 VVILCGNKKDL-DPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKI 190

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  328 bits (843), Expect = e-116
 Identities = 91/226 (40%), Positives = 131/226 (57%), Gaps = 15/226 (6%)

Query: 1   MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
           M++       DYD L K++LIGDSGVGKS LL RF+   F     +TIG++F  RT+E++
Sbjct: 1   MSSE--DYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIE 58

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
           GKRIK QIWDTAGQER+R IT+AYYRGA+G L+VYD++  SS+ N  +W+  + ++A DN
Sbjct: 59  GKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDN 118

Query: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           V   L+GNK+D+    RAVPT + +  A E  + F ETSA  + NV++ F  +   I Q+
Sbjct: 119 VAVGLIGNKSDL-AHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQK 177

Query: 181 LADTDSRAEPQTIKINQPDQAG------------GAAQAAQRSACC 214
           ++         +   N    +                + A  + CC
Sbjct: 178 VSKHQMDLGDSSANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  326 bits (839), Expect = e-115
 Identities = 85/176 (48%), Positives = 117/176 (66%), Gaps = 1/176 (0%)

Query: 2   AAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG 61
                    +YDYL K++LIGDSGVGKS LL RF+   F     +TIG++F  R+I++DG
Sbjct: 16  GRAMGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDG 75

Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNV 121
           K IK QIWDTAG ER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+
Sbjct: 76  KTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI 135

Query: 122 NKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
             +LVGNK+D+    RAVPT + +A A++ G+ F ETSA  + NVE  F +I  +I
Sbjct: 136 VIMLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  327 bits (841), Expect = e-115
 Identities = 87/202 (43%), Positives = 131/202 (64%), Gaps = 13/202 (6%)

Query: 5   PARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK-- 62
             R   DYDYLIKLL +GDSGVGK+  L R++D  F   FITT+GIDF+ + +  + +  
Sbjct: 15  VPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGP 74

Query: 63  --------RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
                   ++ LQ+WDTAGQERFR++TTA++R AMG LL++D+T + SF N+RNW+  ++
Sbjct: 75  NGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQ 134

Query: 115 QHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
            +A  +N + +L+GNKAD+   +R V   + + LAD+YGI +FETSA T  NVE+   ++
Sbjct: 135 ANAYCENPDIVLIGNKADL-PDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETL 193

Query: 174 ARDIKQRLADTDSRAE-PQTIK 194
              I +R+     + + P T+ 
Sbjct: 194 LDLIMKRMEQCVEKTQIPDTVN 215

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  325 bits (836), Expect = e-115
 Identities = 90/198 (45%), Positives = 125/198 (63%), Gaps = 9/198 (4%)

Query: 12  YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
           YDYL K++LIGDSGVGKS LL RF+   F     +TIG++F  R+I++DGK IK QIWDT
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKAD 131
           AGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D
Sbjct: 62  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 121

Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL--------AD 183
           +    RAVPT + +A A++  + F ETSA  + NVEE F +I  +I + +        A 
Sbjct: 122 L-RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAA 180

Query: 184 TDSRAEPQTIKINQPDQA 201
            D       + I+ P   
Sbjct: 181 HDESPGNNVVDISVPPTT 198

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  324 bits (833), Expect = e-115
 Identities = 80/173 (46%), Positives = 108/173 (62%), Gaps = 1/173 (0%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
            YD+L K L+IG++G GKSCLL +F +  F      TIG++F  + I + GK +KLQIWD
Sbjct: 6   TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWD 65

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130
           TAGQERFR++T +YYRGA G LLVYD+T   ++N + NW+ +    AS N+  IL GNK 
Sbjct: 66  TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKK 125

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD 183
           D+ ++ R V   +    A E  + F ETSA T  NVEE F   AR I  ++  
Sbjct: 126 DL-DADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIES 177

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  324 bits (832), Expect = e-115
 Identities = 83/174 (47%), Positives = 117/174 (67%), Gaps = 1/174 (0%)

Query: 6   ARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIK 65
           A A  +Y Y+ K ++IGD GVGKSCLL +F++  F      TIG++F  R IE+ G++IK
Sbjct: 6   ATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIK 65

Query: 66  LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKIL 125
           LQIWDTAGQERFR +T +YYRGA G L+VYD+T  S++N++ +W+ +     + N   IL
Sbjct: 66  LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIIL 125

Query: 126 VGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 179
           +GNKAD+ E++R V   + +  A+E G+ F E SAKT  NVE+ F   A+ I Q
Sbjct: 126 IGNKADL-EAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  323 bits (831), Expect = e-114
 Identities = 71/214 (33%), Positives = 113/214 (52%), Gaps = 7/214 (3%)

Query: 2   AAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG 61
                    +     KL+ +G+  VGK+ L+ RF   SF  ++  TIGIDF  +T+ L+ 
Sbjct: 3   GMSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED 62

Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNV 121
           + ++LQ+WDTAG ERFR++  +Y R +   ++VYD+T+ +SF     WI ++      +V
Sbjct: 63  RTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 122

Query: 122 NKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 181
             +LVGNK D+   KR V   +G+  A E  + F ETSAK   NV+++F  +A  +    
Sbjct: 123 IIMLVGNKTDL-ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGME 181

Query: 182 ADTD-SRAEPQTIKINQPDQAGGAAQAAQRSACC 214
           +  D SR +   IK+ +P +     Q      C 
Sbjct: 182 STQDRSREDMIDIKLEKPQE-----QPVSEGGCL 210

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  321 bits (826), Expect = e-114
 Identities = 64/170 (37%), Positives = 103/170 (60%), Gaps = 1/170 (0%)

Query: 10  ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIW 69
               Y  K++L+G+  VGK+ L+LR+ +  F    ITT+G  F  + + + GKR+ L IW
Sbjct: 1   GSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIW 60

Query: 70  DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNK 129
           DTAGQERF  +   YYR + G +LVYD+TDE SF  ++NW++ + +   + +   +VGNK
Sbjct: 61  DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNK 120

Query: 130 ADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 179
            D+ E +R V   + ++ A+  G K + TSAK N  +EE+F  + + + +
Sbjct: 121 IDL-EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  320 bits (823), Expect = e-113
 Identities = 62/169 (36%), Positives = 96/169 (56%), Gaps = 2/169 (1%)

Query: 12  YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
            +  IK++++G+  VGKS ++ R+  G FT  +  TIG+DF  R I+++ + ++L +WDT
Sbjct: 2   SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDT 61

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKAD 131
           AGQE F  IT AYYRGA   +LV+  TD  SF  I +W   +      ++   LV NK D
Sbjct: 62  AGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKID 120

Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           +      +   + + LA    ++F+ TS K +LNV EVF  +A    Q+
Sbjct: 121 L-LDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  314 bits (808), Expect = e-110
 Identities = 68/209 (32%), Positives = 121/209 (57%), Gaps = 11/209 (5%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
               L+K++++GDSGVGK+ L+ ++ +  F+  +  TIG DF  + + +D + + +QIWD
Sbjct: 4   RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWD 63

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKILV 126
           TAGQERF+++  A+YRGA   +LV+DVT  ++F  + +W       AS    +N   +++
Sbjct: 64  TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123

Query: 127 GNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDS 186
           GNK D+ E+++            +  I +FETSAK  +NVE+ F +IAR+  ++  + + 
Sbjct: 124 GNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVEL 182

Query: 187 RAE-PQTIKINQPDQAGGAAQAAQRSACC 214
             E P+ IK+++ ++A          +C 
Sbjct: 183 YNEFPEPIKLDKNERAKA-----SAESCS 206

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  312 bits (803), Expect = e-110
 Identities = 70/179 (39%), Positives = 105/179 (58%), Gaps = 6/179 (3%)

Query: 1   MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
           MAA       +     KL+L+GD G GKS L+LRF    F     +TIG  F  +T+ ++
Sbjct: 3   MAAAG-----NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVN 57

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
              +K +IWDTAGQER+ ++   YYRGA   ++V+DVT+++SF   + W++ ++   + N
Sbjct: 58  DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPN 117

Query: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 179
           +   L GNK+D+    R V     Q  A E G+ F ETSAKT  NV+E+F+ IAR + +
Sbjct: 118 MVMALAGNKSDL-LDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPR 175

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  311 bits (798), Expect = e-109
 Identities = 63/178 (35%), Positives = 98/178 (55%), Gaps = 1/178 (0%)

Query: 3   APPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK 62
           +     R      +K+ L+GD+GVGKS ++ RF    F  +   TIG  F  +T+    +
Sbjct: 11  SSGLVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNE 70

Query: 63  RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN 122
             K  IWDTAGQERF ++   YYRG+   ++VYD+T + SF  ++ W++ +++H  +N+ 
Sbjct: 71  LHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIV 130

Query: 123 KILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
             + GNK D+    R VP    +  A+  G    ETSAK  +N+EE+F  I+R I   
Sbjct: 131 MAIAGNKCDL-SDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPL 187

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  310 bits (795), Expect = e-108
 Identities = 53/210 (25%), Positives = 93/210 (44%), Gaps = 5/210 (2%)

Query: 7   RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIG-IDFKIRTIELDGKRIK 65
            +    +   K+ LIGD GVGK+  + R  DG F  ++  T+G ++  +  ++  G  IK
Sbjct: 3   GSMERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIK 62

Query: 66  LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKIL 125
             +WDTAGQE+   +   YY GA G +L +DVT   +  N+  W++  +    +    ++
Sbjct: 63  FNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVV 122

Query: 126 VGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA--- 182
             NK D+ ++++ +       +      ++FE SAKT  N    F  +AR    R     
Sbjct: 123 CANKIDI-KNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIF 181

Query: 183 DTDSRAEPQTIKINQPDQAGGAAQAAQRSA 212
            ++   EP  +  +               A
Sbjct: 182 VSNVNLEPTEVNYDYHSPEESKYIDYMEQA 211

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  307 bits (790), Expect = e-108
 Identities = 65/167 (38%), Positives = 103/167 (61%), Gaps = 1/167 (0%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           +     KL+ +G+  VGK+ L+ RF   SF  ++  TIGIDF  +T+ L+ + ++LQ+WD
Sbjct: 10  NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 69

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130
           TAGQERFR++  +Y R +   ++VYD+T+ +SF+    WI ++      +V  +LVGNK 
Sbjct: 70  TAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKT 129

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
           D+   KR V T +G+  A E  + F ETSAK   NV+++F  +A  +
Sbjct: 130 DL-SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  307 bits (788), Expect = e-108
 Identities = 69/176 (39%), Positives = 99/176 (56%), Gaps = 7/176 (3%)

Query: 10  ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIW 69
           A    L K++L+GD GVGKS L+ R+    F T    TIG++F  + +E+DG  + +QIW
Sbjct: 2   AGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIW 61

Query: 70  DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKIL 125
           DTAGQERFR++ T +YRG+   LL + V D  SF N+ NW +    +A     ++   ++
Sbjct: 62  DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVI 121

Query: 126 VGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVFFSIARDIKQR 180
           +GNK D+ E  R V T + QA   + G   +FETSAK   NV   F    R +   
Sbjct: 122 LGNKIDISE--RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 175

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  306 bits (786), Expect = e-108
 Identities = 57/172 (33%), Positives = 85/172 (49%), Gaps = 5/172 (2%)

Query: 10  ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK-RIKLQI 68
             +   +K++++GD   GK+ L   F+  +F   +  TIG+DF +R I L G   + LQI
Sbjct: 1   GSHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQI 60

Query: 69  WDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ---HASDNVNKIL 125
           WD  GQ     +   Y  GA G+LLVYD+T+  SF N+ +W   +++    +       L
Sbjct: 61  WDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVAL 120

Query: 126 VGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
           VGNK D+ E  R +   K      E G      SAKT  +V   F  +A +I
Sbjct: 121 VGNKIDL-EHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  305 bits (783), Expect = e-107
 Identities = 64/164 (39%), Positives = 96/164 (58%), Gaps = 1/164 (0%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +K+ L+GD+GVGKS ++ RF + SF  +   TIG  F  +T++   +  K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           RFR +   YYRG+   ++VYD+T E +F+ ++NW+R + QH   ++   + GNK D+   
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDL-TD 125

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 179
            R V     +  AD     F ETSAK  +N+ E+F  I+R I  
Sbjct: 126 VREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPS 169

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  304 bits (781), Expect = e-107
 Identities = 71/176 (40%), Positives = 108/176 (61%), Gaps = 6/176 (3%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR-IKLQIW 69
               ++K++++GDSGVGK+ L+ R+ +  ++  +  TIG DF  + + +DG +   +Q+W
Sbjct: 4   RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVW 63

Query: 70  DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKIL 125
           DTAGQERF+++  A+YRGA   +LVYDVT+ SSF NI++W      HA+    +    ++
Sbjct: 64  DTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVI 123

Query: 126 VGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVFFSIARDIKQR 180
           +GNK D +ESK+ V     Q LA   G I  F TSAK  +NV+  F  IAR   Q+
Sbjct: 124 LGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 179

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  302 bits (777), Expect = e-106
 Identities = 75/170 (44%), Positives = 112/170 (65%), Gaps = 1/170 (0%)

Query: 10  ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIW 69
            +     KL+L+G+S VGKS L+LRF  G F     +TIG  F  +T+ LD   +K +IW
Sbjct: 1   GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60

Query: 70  DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNK 129
           DTAGQER+ ++   YYRGA   ++VYD+T+E SF   +NW++ +++ AS N+   L GNK
Sbjct: 61  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120

Query: 130 ADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 179
           AD+  +KRAV   + Q+ AD+  + F ETSAKT++NV E+F +IA+ + +
Sbjct: 121 ADL-ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  298 bits (765), Expect = e-104
 Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 8/181 (4%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSD--GSFTTSFITTIGIDFKIRTIELDGKRIKLQI 68
                 K+ ++G++ VGKS L+  F+     F   +  T G++  +  + +    + +++
Sbjct: 16  TATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVEL 75

Query: 69  W--DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ---HASDNVNK 123
           +  DTAG + ++   + Y+ G    +LV+DV+   SF + + W   ++         +  
Sbjct: 76  FLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRA 135

Query: 124 ILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK-TNLNVEEVFFSIARDIKQRLA 182
           +LV NK D+   +  V     Q  A    + FF+ SA     + +  F SIA    +   
Sbjct: 136 VLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYE 195

Query: 183 D 183
           D
Sbjct: 196 D 196

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  293 bits (753), Expect = e-102
 Identities = 55/204 (26%), Positives = 100/204 (49%), Gaps = 10/204 (4%)

Query: 1   MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
           MA+    A+ +     KL+L+GD G GK+  + R   G F   ++ T+G++        +
Sbjct: 4   MASA---AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN 60

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
              IK  +WDTAGQE+F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N
Sbjct: 61  RGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-EN 119

Query: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           +  +L GNK D+ + K     +K      +  +++++ SAK+N N E+ F  +AR +   
Sbjct: 120 IPIVLCGNKVDIKDRK---VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 176

Query: 181 LA---DTDSRAEPQTIKINQPDQA 201
                       P  + ++    A
Sbjct: 177 PNLEFVAMPALAPPEVVMDPALAA 200

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  285 bits (732), Expect = 2e-99
 Identities = 49/174 (28%), Positives = 79/174 (45%), Gaps = 3/174 (1%)

Query: 9   RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQI 68
           +   D + K++L+G+SGVGKS L   F      ++       D   R I +D + + L +
Sbjct: 17  QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVV 76

Query: 69  WDTAGQERFR-TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKILV 126
           +D   Q      +     +     L+V+ VTD  SF+ +   +  +       ++  ILV
Sbjct: 77  YDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILV 136

Query: 127 GNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           GNK+D+    R V   +G+ LA     K  ETSA  + N  E+F    R I+ R
Sbjct: 137 GNKSDL-ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 189

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  285 bits (732), Expect = 3e-99
 Identities = 66/215 (30%), Positives = 112/215 (52%), Gaps = 12/215 (5%)

Query: 1   MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
           MAA   + + +   L K++++G  GVGKS L L+F    F   +  T    ++ + + LD
Sbjct: 1   MAANKPKGQ-NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLD 58

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASD 119
           G+ +++ I DTAGQE +  I   Y+R   G L V+ +T+  SF    ++   I +    +
Sbjct: 59  GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE 118

Query: 120 NVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 179
           NV  +LVGNK+D+ E KR V   + +  A+++ + + ETSAKT  NV++VFF + R+I+ 
Sbjct: 119 NVPFLLVGNKSDL-EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA 177

Query: 180 RLADTDSRAEPQTIKINQPDQAGGAAQAAQRSACC 214
           R  +       +  + +   +         R  CC
Sbjct: 178 RKMEDSKEKNGKKKRKSLAKR--------IRERCC 204

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  278 bits (713), Expect = 1e-96
 Identities = 60/180 (33%), Positives = 100/180 (55%), Gaps = 3/180 (1%)

Query: 2   AAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG 61
            +       +   L K++++G  GVGKS L L+F    F   +  T    ++ + + LDG
Sbjct: 5   ISGGGGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDG 63

Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDN 120
           + +++ I DTAGQE +  I   Y+R   G L V+ +T+  SF    ++   I +    +N
Sbjct: 64  EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 123

Query: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           V  +LVGNK+D+ E KR V   + +  A+++ + + ETSAKT  NV++VFF + R+I+ R
Sbjct: 124 VPFLLVGNKSDL-EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 182

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  275 bits (707), Expect = 1e-95
 Identities = 62/171 (36%), Positives = 89/171 (52%), Gaps = 3/171 (1%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
                 KL+++G  GVGKS L ++F    F + +  TI  D   +   +DG   +L I D
Sbjct: 5   PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILD 63

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKILVGNK 129
           TAGQE F  +   Y R   G LLV+ + D  SFN +      I      D+   +LVGNK
Sbjct: 64  TAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNK 123

Query: 130 ADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           AD+ ES+R VP S+  A    + + +FE SAK  LNV+E F  + R +++ 
Sbjct: 124 ADL-ESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKY 173

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  275 bits (705), Expect = 1e-95
 Identities = 48/168 (28%), Positives = 76/168 (45%), Gaps = 3/168 (1%)

Query: 15  LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           + K++L+G+SGVGKS L   F       +       D   R I +D + + L ++D   Q
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61

Query: 75  ERFR-TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADM 132
                 +     +     L+V+ VTD  SF+ +   +  +       ++  ILVGNK+D+
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 121

Query: 133 DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
               R V   +G+ LA     K  ETSA  + N  E+F    R I+ R
Sbjct: 122 -ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  272 bits (697), Expect = 3e-94
 Identities = 61/181 (33%), Positives = 98/181 (54%), Gaps = 4/181 (2%)

Query: 2   AAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG 61
           +   +   ++     KL+++GD GVGKS L ++F    F   +  TI  D  ++  E+D 
Sbjct: 5   SMATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDN 63

Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDN 120
           +   L + DTAGQE F  +   Y R   G L+VY VTD++SF ++  + + I +    ++
Sbjct: 64  QWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRES 123

Query: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN-LNVEEVFFSIARDIKQ 179
              ILV NK D+    R V   +G+ +A +Y I + ETSAK   LNV++ F  + R I+Q
Sbjct: 124 FPMILVANKVDL-MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182

Query: 180 R 180
           +
Sbjct: 183 Q 183

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  268 bits (687), Expect = 7e-93
 Identities = 61/167 (36%), Positives = 98/167 (58%), Gaps = 3/167 (1%)

Query: 15  LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           L K++++G  GVGKS L L+F    F   +  T    ++ + + LDG+ +++ I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 62

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMD 133
           E +  I   Y+R   G L V+ +T+  SF    ++   I +    +NV  +LVGNK+D+ 
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL- 121

Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           E KR V   + +  AD++ + + ETSAKT  NV++VFF + R+I+ R
Sbjct: 122 EDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  269 bits (689), Expect = 8e-93
 Identities = 57/196 (29%), Positives = 92/196 (46%), Gaps = 5/196 (2%)

Query: 10  ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIW 69
            +     ++++ G  GVGKS L+LRF  G+F  ++I TI   ++ + I  D     LQI 
Sbjct: 3   PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQIT 61

Query: 70  DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ--HASDNVNKILVG 127
           DT G  +F  +           +LV+ VT + S   +    + I Q   + +++  +LVG
Sbjct: 62  DTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVG 121

Query: 128 NKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSR 187
           NK D  +  R V T + QA+A E+   F ETSAK N NV+E+F  +     +R    +  
Sbjct: 122 NKCDETQ--REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNID 179

Query: 188 AEPQTIKINQPDQAGG 203
            +    +       G 
Sbjct: 180 GKRSGKQKRTDRVKGK 195

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  266 bits (683), Expect = 4e-92
 Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 3/170 (1%)

Query: 12  YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
                K+ ++G   VGKS L ++F +G F  S+  TI   F  + I ++G+   LQ+ DT
Sbjct: 3   QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDT 61

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKILVGNKA 130
           AGQ+ +      Y     G +LVY VT   SF  I+     + +      +  +LVGNK 
Sbjct: 62  AGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKK 121

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           D+   +R +   +G+ALA+ +   F E+SAK N    +VF  I  + ++ 
Sbjct: 122 DL-HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKM 170

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  265 bits (681), Expect = 2e-91
 Identities = 50/170 (29%), Positives = 88/170 (51%), Gaps = 3/170 (1%)

Query: 12  YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
                K++++G   VGK+ L  +F +G F+  +  T+   +  + + L      L + DT
Sbjct: 21  LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGKDEFHLHLVDT 79

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKILVGNKA 130
           AGQ+ +  +  ++  G  G +LVY VT   SF  I +  + + E H    V  +LVGNKA
Sbjct: 80  AGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKA 139

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           D+   +R V   +G+ LA+ +G  F E+SA+ N   + +F  + ++I + 
Sbjct: 140 DL-SPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARV 188

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  263 bits (675), Expect = 5e-91
 Identities = 65/163 (39%), Positives = 98/163 (60%), Gaps = 3/163 (1%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K++++G  GVGKS L ++F  G+F   +  TI  DF  + IE+D     L+I DTAG E+
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQ 63

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKILVGNKADMDES 135
           F ++   Y +   G +LVY + ++ SF +I+     I      + V  ILVGNK D+ ES
Sbjct: 64  FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL-ES 122

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIK 178
           +R V +S+G+ALA+E+G  F ETSAK+   V+E+F  I R + 
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  262 bits (672), Expect = 1e-90
 Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 4/164 (2%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++     F      TI   ++ + + +DG+   L I DTAGQE 
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQEE 63

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDES 135
           +  +   Y R   G L V+ + +  SF +I  +   I++   SD+V  +LVGNK+D+   
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA- 122

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 179
            R V + + Q LA  YGI + ETSAKT   VE+ F+++ R+I+Q
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  263 bits (675), Expect = 1e-90
 Identities = 59/210 (28%), Positives = 98/210 (46%), Gaps = 41/210 (19%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIK----- 65
           +     K +L+G+S VGKS ++LR +  +F  +  TTIG  F    + L+   IK     
Sbjct: 3   EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNN 62

Query: 66  --------------------------------LQIWDTAGQERFRTITTAYYRGAMGILL 93
                                             IWDTAGQER+ +I   YYRGA   ++
Sbjct: 63  EKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIV 122

Query: 94  VYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI 153
           V+D+++ ++ +  + W+  +    S N   ILV NK D +  K  V   + Q  A +  +
Sbjct: 123 VFDISNSNTLDRAKTWVNQL--KISSNYIIILVANKIDKN--KFQVDILEVQKYAQDNNL 178

Query: 154 KFFETSAKTNLNVEEVFFSIARDIKQRLAD 183
            F +TSAKT  N++ +F+ +A +I + + +
Sbjct: 179 LFIQTSAKTGTNIKNIFYMLAEEIYKNIIN 208

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  262 bits (673), Expect = 1e-90
 Identities = 61/165 (36%), Positives = 92/165 (55%), Gaps = 4/165 (2%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++     F   +  TI   ++ + + +DG+   L I DTAGQE 
Sbjct: 23  KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEE 81

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDES 135
           +  +   Y R   G L V+ + +  SF +I  +   I++   SD+V  +LVGNK D+   
Sbjct: 82  YSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT- 140

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
            R V T +   LA  YGI F ETSAKT   VE+ F+++ R+I+Q 
Sbjct: 141 -RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQY 184

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  260 bits (668), Expect = 5e-90
 Identities = 55/166 (33%), Positives = 84/166 (50%), Gaps = 4/166 (2%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           ++ + G  GVGKS L+LRF  G+F  S+I T+   ++ + I  D     LQI DT G  +
Sbjct: 5   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQ 63

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA--SDNVNKILVGNKADMDE 134
           F  +           +LVY +T   S   ++     I +     +++  +LVGNK D   
Sbjct: 64  FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDE-S 122

Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
             R V +S+ +ALA  +   F ETSAK N NV+E+F  +    K+R
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRR 168

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  260 bits (668), Expect = 5e-90
 Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 4/167 (2%)

Query: 15  LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           + K+LL+G  GVGKS L   F  G          G  +  R+I +DG+   L ++D   Q
Sbjct: 2   VYKVLLLGAPGVGKSALARIFG-GVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQ 59

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMD 133
           +  R +           ++VY VTD+ SF         + +   +D+V  ILVGNK+D+ 
Sbjct: 60  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL- 118

Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
              R V   +G+A A  +  KF ETSA  + NV+ +F  + R I+ R
Sbjct: 119 VRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  260 bits (668), Expect = 9e-90
 Identities = 59/165 (35%), Positives = 94/165 (56%), Gaps = 4/165 (2%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++     F   +  TI   ++ + + +DG+   L I DTAGQE 
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEE 64

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDES 135
           +  +   Y R   G L V+ + +  SF +I ++   I++   S++V  +LVGNK D+   
Sbjct: 65  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS- 123

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
            R V T + Q LA  YGI F ETSAKT   V++ F+++ R+I++ 
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 167

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  257 bits (659), Expect = 1e-88
 Identities = 54/173 (31%), Positives = 84/173 (48%), Gaps = 5/173 (2%)

Query: 15  LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           L +++L+GD GVGK+ L   F+              D   RT+ +DG+   L + DT   
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLG-EDVYERTLTVDGEDTTLVVVDTWEA 62

Query: 75  ERFRTITT--AYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKILVGNKAD 131
           E+     +  +  +G    ++VY + D  SF +       +   H +D+V  ILVGNKAD
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122

Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADT 184
           +    R V   +G+A A  +  KF ETSA    NV E+F  + R ++ R  D+
Sbjct: 123 L-ARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRRRDS 174

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  255 bits (655), Expect = 5e-88
 Identities = 60/165 (36%), Positives = 100/165 (60%), Gaps = 4/165 (2%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++F  G F   +  TI   ++ + +E+D ++  L+I DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQ 63

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDES 135
           F  +   Y +   G  LVY +T +S+FN++++    I +   +++V  ILVGNK D+ E 
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL-ED 122

Query: 136 KRAVPTSKGQALADEY-GIKFFETSAKTNLNVEEVFFSIARDIKQ 179
           +R V   +GQ LA ++    F E+SAK+ +NV E+F+ + R I +
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  256 bits (656), Expect = 1e-87
 Identities = 55/185 (29%), Positives = 91/185 (49%), Gaps = 8/185 (4%)

Query: 1   MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIEL 59
           M+     +    +   +++LIG+ GVGKS L   F+    +  S    +G D   RT+ +
Sbjct: 23  MSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMV 82

Query: 60  DGKR---IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQ 115
           DG+    I L +W+  G+  +  +     +     L+VY +TD +SF         +   
Sbjct: 83  DGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRA 140

Query: 116 HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR 175
             ++++  ILVGNK+D+    R V  S+G+A A  +  KF ETSA    NV+E+F  I R
Sbjct: 141 RQTEDIPIILVGNKSDL-VRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVR 199

Query: 176 DIKQR 180
            ++ R
Sbjct: 200 QVRLR 204

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  252 bits (645), Expect = 2e-86
 Identities = 71/167 (42%), Positives = 102/167 (61%), Gaps = 2/167 (1%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IKL+L+G++ VGKS ++LRF    F  +   TIG  F  + + ++   +K +IWDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKAD--MD 133
           RF ++   YYR A   L+VYDVT   SF   R+W++ + + AS ++   LVGNK D   +
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123

Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
             +R V   +G+ LA+E G+ FFETSAKT  NV +VF  I   I  +
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  250 bits (641), Expect = 1e-85
 Identities = 58/171 (33%), Positives = 92/171 (53%), Gaps = 5/171 (2%)

Query: 12  YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
               +KL + G +GVGKS L++RF    F   +  T+   ++     +D + + ++I DT
Sbjct: 25  KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDT 83

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKA 130
           AGQE        + R   G +LVYD+TD  SF  +      +++     NV  ILVGNKA
Sbjct: 84  AGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKA 142

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTN-LNVEEVFFSIARDIKQR 180
           D+ +  R V T +G+ LA E    F+E SA T   N+ E+F+ + R++++R
Sbjct: 143 DL-DHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR 192

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  241 bits (618), Expect = 3e-82
 Identities = 43/177 (24%), Positives = 85/177 (48%), Gaps = 14/177 (7%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTT--SFITTIGIDFKIRTIELDGKR---IKLQIWD 70
           +KL+++G++G GK+ LL +      +       T+GID K   I++  KR   + L +WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTD-ESSFNNIRNWIRNIEQHASDNVNKILVGNK 129
            AG+E F +    +       L VYD++  ++  + ++ W+ NI+  AS +   ILVG  
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSP-VILVGTH 121

Query: 130 ADMDESK--RAVPTSKGQALADEYGI-----KFFETSAKTNLNVEEVFFSIARDIKQ 179
            D+ + K  +A  +   + L ++ G        F  + + +  + ++  +I  +   
Sbjct: 122 LDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN 178

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  239 bits (613), Expect = 2e-81
 Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 10/168 (5%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +K+ ++G+   GKS L+ R+  G++        G  FK + I +DG+   L I D  G  
Sbjct: 21  LKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RFK-KEIVVDGQSYLLLIRDEGGPP 78

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMD- 133
             +     +      ++ V+ + DE SF  + N+   +     +  V  +LVG +  +  
Sbjct: 79  ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISA 133

Query: 134 ESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVFFSIARDIKQR 180
            + R +  S+ + L+ +     ++ET A   LNVE VF  +A+ +   
Sbjct: 134 ANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVAL 181

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  237 bits (608), Expect = 2e-80
 Identities = 54/174 (31%), Positives = 87/174 (50%), Gaps = 8/174 (4%)

Query: 12  YDYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKR---IKLQ 67
                +++LIG+ GVGKS L   F+    +  S    +G D   RT+ +DG+    I L 
Sbjct: 3   GMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLD 62

Query: 68  IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKILV 126
           +W+  G+  +  +     +     L+VY +TD +SF         +     ++++  ILV
Sbjct: 63  MWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILV 120

Query: 127 GNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           GNK+D+    R V  S+G+A A  +  KF ETSA    NV+E+F  I R ++ R
Sbjct: 121 GNKSDL-VRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLR 173

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  237 bits (607), Expect = 2e-80
 Identities = 47/180 (26%), Positives = 84/180 (46%), Gaps = 9/180 (5%)

Query: 4   PPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR 63
                +   +    L ++G  G GKS L ++F    F + +   +   +      +D + 
Sbjct: 12  ENLYFQGPLEV--NLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVDHQP 68

Query: 64  IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD---N 120
           + L++ DTA  +  R     Y   A   L+VY V    SF++  +++  +  HA +   +
Sbjct: 69  VHLRVMDTADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRS 127

Query: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL-NVEEVFFSIARDIKQ 179
           +  +L+GNK DM    R V  ++G ALA  +G  FFE SA  +  +V+ VF    R+ ++
Sbjct: 128 IPALLLGNKLDM-AQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARR 186

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  220 bits (564), Expect = 5e-74
 Identities = 43/171 (25%), Positives = 80/171 (46%), Gaps = 12/171 (7%)

Query: 15  LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
            ++L ++GD+  GKS L+ RF  GS+      T    +K + + +DG+   + I + AG 
Sbjct: 7   ELRLGVLGDARSGKSSLIHRFLTGSYQ-VLEKTESEQYK-KEMLVDGQTHLVLIREEAGA 64

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW---IRNIEQHASDNVNKILVGNKAD 131
              +     +   A  ++ V+ + DE+SF  +      + ++       +   LVG +  
Sbjct: 65  PDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDR 119

Query: 132 MD-ESKRAVPTSKGQAL-ADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           +   S R V  ++ +AL AD     ++ET A   LNV+ VF  +A+ +   
Sbjct: 120 ISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTL 170

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  210 bits (537), Expect = 7e-66
 Identities = 39/187 (20%), Positives = 66/187 (35%), Gaps = 13/187 (6%)

Query: 1   MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL- 59
             A        +   IK+ LIGD   GK+ LL +    +F      T G++   +     
Sbjct: 27  EEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNI 86

Query: 60  -------DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRN 112
                  + K      WD  GQE        +   +   +L+ D     + +N   W+R+
Sbjct: 87  KGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRH 143

Query: 113 IEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS 172
           IE++   +   I+V NK D +     +   K          +F   S K    VE +  S
Sbjct: 144 IEKYGGKSP-VIVVMNKIDENP-SYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKS 201

Query: 173 IARDIKQ 179
           +   +  
Sbjct: 202 LKSAVLH 208

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  196 bits (499), Expect = 4e-64
 Identities = 51/173 (29%), Positives = 86/173 (49%), Gaps = 5/173 (2%)

Query: 6   ARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIK 65
           A    +    +K++++GD  VGK+CLLL FS G   T+++ T+  +F    ++   +   
Sbjct: 14  AGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFI 72

Query: 66  LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKI 124
           L +WDTAGQE +  +    Y  +  +LL + V + +SF+NI   W   I +H  D    +
Sbjct: 73  LHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEI-KHYIDTAKTV 131

Query: 125 LVGNKADM-DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVFFSIAR 175
           LVG K D+  +    V   +G  L  + G + + E S+   + + EVF     
Sbjct: 132 LVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVD 184

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  178 bits (453), Expect = 7e-57
 Identities = 59/173 (34%), Positives = 93/173 (53%), Gaps = 15/173 (8%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +K++L+GD G GK+ LL+ F+DG+F  S+  T+   + +  +++ GK + L IWDTAGQ+
Sbjct: 35  VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQD 93

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADMDE 134
            +  +   +Y  A  +LL +DVT  +SF+NI N W   +  H    V  I+VG K D+ +
Sbjct: 94  DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV-NHFCKKVPIIVVGCKTDLRK 152

Query: 135 SK-----------RAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVFFSIAR 175
            K             V   +GQ +A   G + + E SA+ + NV  VF   A 
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAE 205

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  176 bits (449), Expect = 1e-56
 Identities = 52/171 (30%), Positives = 92/171 (53%), Gaps = 13/171 (7%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IK + +GD  VGK+CLL+ ++  +F T ++ T+  +F    + ++G  + L +WDTAGQE
Sbjct: 9   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQE 67

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADMDE 134
            +  +    YRGA   +L + +  ++S+ N+   WI  + +H +  V  +LVG K D+ +
Sbjct: 68  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIVLVGTKLDLRD 126

Query: 135 SKRA---------VPTSKGQALADEYG-IKFFETSAKTNLNVEEVFFSIAR 175
            K+          + T +G+ L    G   + E S+K+  NV+ VF +  R
Sbjct: 127 DKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIR 177

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  174 bits (444), Expect = 1e-55
 Identities = 57/187 (30%), Positives = 87/187 (46%), Gaps = 15/187 (8%)

Query: 2   AAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG 61
           +    R         KL+++GD   GK+CLL+ FS   F   ++ T+  +  I  IE+DG
Sbjct: 12  SGLVPRGSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDG 70

Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDN 120
           K+++L +WDTAGQE +  +    Y     IL+ + +    S  NI   W   ++     N
Sbjct: 71  KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-N 129

Query: 121 VNKILVGNKADM-----------DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEE 168
           V  ILVGNK D+              +  V + +G+ +A+      + E SAKT   V E
Sbjct: 130 VPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVRE 189

Query: 169 VFFSIAR 175
           VF    R
Sbjct: 190 VFEMATR 196

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  169 bits (430), Expect = 2e-53
 Identities = 57/173 (32%), Positives = 86/173 (49%), Gaps = 15/173 (8%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            KL+++GD   GK+CLL+ FS   F   ++ T+  ++ +  IE+DGK+++L +WDTAGQE
Sbjct: 26  KKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQE 84

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADM-- 132
            +  +    Y     IL+ + V    S  NI   W+  ++     NV  ILV NK D+  
Sbjct: 85  DYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRS 143

Query: 133 ---------DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVFFSIAR 175
                       +  V T  G+A+A       + E SAKT   V EVF +  R
Sbjct: 144 DEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATR 196

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  165 bits (419), Expect = 7e-52
 Identities = 52/168 (30%), Positives = 85/168 (50%), Gaps = 15/168 (8%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+ ++  +F   +I T+  D     + +DGK + L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQE 89

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADM-- 132
            +  +    Y      L+ + +   +SF N+R  W   + +H   N   ILVG K D+  
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 148

Query: 133 ---------DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVF 170
                    ++    +   +G A+A E G +K+ E SA T   ++ VF
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  162 bits (413), Expect = 9e-51
 Identities = 50/171 (29%), Positives = 92/171 (53%), Gaps = 11/171 (6%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IK + +GD  VGK+C+L+ ++   F T +I T+  D     + +DG+ + L +WDTAGQE
Sbjct: 10  IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGQIVNLGLWDTAGQE 68

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADM-- 132
            +  +    YRGA   +L + +  ++S+ N+   W+  + +  + NV  +LVG K D+  
Sbjct: 69  DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPEL-RRFAPNVPIVLVGTKLDLRD 127

Query: 133 -----DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVFFSIARDI 177
                 +    + +++G+ L  + G   + E S+KT  NV+ VF +  + +
Sbjct: 128 DKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 178

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  159 bits (405), Expect = 1e-49
 Identities = 41/174 (23%), Positives = 87/174 (50%), Gaps = 16/174 (9%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           + +   K++++GDS  GK+ LL  F+   F  +++ T+  ++   + E+D +RI+L +WD
Sbjct: 24  NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWD 82

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNK 129
           T+G   +  +    Y  +  +L+ +D++   + +++   W   I++    N   +LVG K
Sbjct: 83  TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCK 141

Query: 130 ADM-----------DESKRAVPTSKGQALADEYG-IKFFETSAKTNLN-VEEVF 170
           +D+           +  +  V   +G  +A + G   + E SA  + N V ++F
Sbjct: 142 SDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 195

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  158 bits (402), Expect = 1e-49
 Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 15/173 (8%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+ ++  +F   +I T+  D     + +DGK + L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADM-- 132
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   ILVG K D+  
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 123

Query: 133 ---------DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVFFSIAR 175
                    ++    +   +G A+A E G +K+ E SA T   ++ VF    R
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 176

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  160 bits (405), Expect = 4e-49
 Identities = 44/223 (19%), Positives = 75/223 (33%), Gaps = 67/223 (30%)

Query: 22  GDSGVGKSCLLLRF---SDGSFTTSFITTIG-IDFKIRTIELD--------------GKR 63
           G  G+GKSCL  RF   S   F     + +   DF  R +  D                 
Sbjct: 35  GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94

Query: 64  IKLQIW-------DTAGQERFRTITTAYYRGAM--------------------------- 89
            K+ I        D   Q    T    Y + A                            
Sbjct: 95  CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQK 154

Query: 90  ----------GILLVYDVT--DESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESK 136
                     G LL  DV+     +F++   ++ N+    +      ++V  K D    +
Sbjct: 155 QMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDE-GVE 213

Query: 137 RAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 179
           R +  +   AL+ +  ++  ETSA++N+NV+  F ++ + I +
Sbjct: 214 RYIRDAHTFALSKK-NLQVVETSARSNVNVDLAFSTLVQLIDK 255

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  157 bits (398), Expect = 6e-49
 Identities = 41/169 (24%), Positives = 85/169 (50%), Gaps = 16/169 (9%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            K++++GDS  GK+ LL  F+   F  +++ T+  ++   + E+D +RI+L +WDT+G  
Sbjct: 8   CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWDTSGSP 66

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADM-- 132
            +  +    Y  +  +L+ +D++   + +++   W   I++    N   +LVG K+D+  
Sbjct: 67  YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRT 125

Query: 133 ---------DESKRAVPTSKGQALADEYG-IKFFETSAKTNLN-VEEVF 170
                    +  +  V   +G  +A + G   + E SA  + N V ++F
Sbjct: 126 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 174

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  157 bits (399), Expect = 8e-49
 Identities = 54/184 (29%), Positives = 86/184 (46%), Gaps = 17/184 (9%)

Query: 2   AAPPARARA--DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL 59
             P  R RA       +K +L+GD  VGK+ L++ ++   + T +I T   D     + +
Sbjct: 5   GEPGGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSV 63

Query: 60  DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHAS 118
           DG+ ++LQ+ DTAGQ+ F  +    Y      LL + V   SSF N+   W+  I +   
Sbjct: 64  DGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEI-RCHC 122

Query: 119 DNVNKILVGNKADM-----------DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNV 166
                ILVG ++D+              ++ VP    + LA+E     + E SA T  N+
Sbjct: 123 PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNL 182

Query: 167 EEVF 170
           +EVF
Sbjct: 183 KEVF 186

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  153 bits (388), Expect = 4e-47
 Identities = 35/174 (20%), Positives = 82/174 (47%), Gaps = 16/174 (9%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD   GK+ +L   +   +  +++ T+  ++    +E + +R++L +WDT+G  
Sbjct: 28  CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSP 86

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADM-- 132
            +  +    Y  +  +LL +D++   + ++    W   I  +   +   +L+G K D+  
Sbjct: 87  YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRT 145

Query: 133 ---------DESKRAVPTSKGQALADEYG-IKFFETSAKTN-LNVEEVFFSIAR 175
                     + +  +   +G A+A + G   + E SA T+  ++  +F + + 
Sbjct: 146 DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASM 199

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  153 bits (387), Expect = 4e-47
 Identities = 48/187 (25%), Positives = 94/187 (50%), Gaps = 15/187 (8%)

Query: 2   AAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG 61
           A   + A      ++K +++GD  VGK+CLL+ +++ +F   ++ T+  D    ++ + G
Sbjct: 5   AGRSSMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGG 63

Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDN 120
           K+  L ++DTAGQE +  +    Y      L+ + V + +SF N++  W+  ++++ + N
Sbjct: 64  KQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APN 122

Query: 121 VNKILVGNKADM-----------DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEE 168
           V  +L+G + D+           D  ++ +   +GQ LA E G   + E SA T   ++ 
Sbjct: 123 VPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKT 182

Query: 169 VFFSIAR 175
           VF     
Sbjct: 183 VFDEAII 189

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score =  113 bits (283), Expect = 3e-30
 Identities = 51/183 (27%), Positives = 86/183 (46%), Gaps = 15/183 (8%)

Query: 1   MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
           +             LIK +++GD  VGK+CLL+ ++  +F   +I T+  D     + +D
Sbjct: 141 IKKTAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVD 199

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASD 119
           GK + L +WDTAG E +  +    Y      L+ + +   +SF+++R  W   +  H   
Sbjct: 200 GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP- 258

Query: 120 NVNKILVGNKADM-----------DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVE 167
           N   ILVG K D+           ++    +   +G A+A E G +K+ E SA T   ++
Sbjct: 259 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 318

Query: 168 EVF 170
            VF
Sbjct: 319 TVF 321

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 96.0 bits (239), Expect = 6e-25
 Identities = 35/184 (19%), Positives = 60/184 (32%), Gaps = 20/184 (10%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDG----------SFTTSFITTIGIDFKIRTIE-LDGKRI 64
            K++  G    GK+  L                S  T    T+  DF    I  + G + 
Sbjct: 15  FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKT 74

Query: 65  KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW--IRNIEQHASDNVN 122
           +  ++   GQ  +        RG  GI+ V D        N  +   +R         ++
Sbjct: 75  RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLD 134

Query: 123 KI--LVG-NKADMDESKRAVPTSK-GQALADEYGIKFFETSAKTNLNVEEVFFSIARDIK 178
            +  ++  NK D+     A+P       +  E      E  A     V E    ++R + 
Sbjct: 135 DVPIVIQVNKRDL---PDALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVL 191

Query: 179 QRLA 182
            R+A
Sbjct: 192 ARVA 195

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 76.8 bits (190), Expect = 7e-18
 Identities = 41/174 (23%), Positives = 74/174 (42%), Gaps = 20/174 (11%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G  G GK+ +L R   G   T+ I TIG  F + T+    K +K Q+WD  G  
Sbjct: 8   MRILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTY--KNLKFQVWDLGGLT 62

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILV-GNKADMDE 134
             R     YY     ++ V D  D       ++ +  + +        ++V  NK DM++
Sbjct: 63  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 122

Query: 135 SKRAVPTSKGQALADEYG--------IKFFETSAKTNLNVEEVFFSIARDIKQR 180
           +  +        +A+  G         + F+TSA     ++E    +   +K R
Sbjct: 123 AMTS------SEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 170

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 76.5 bits (189), Expect = 1e-17
 Identities = 43/168 (25%), Positives = 69/168 (41%), Gaps = 8/168 (4%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G  G GK+ +L R   G   T+   TIG  F + T+    K +KL +WD  GQ 
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEVVTT-KPTIG--FNVETLSY--KNLKLNVWDLGGQT 73

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILV-GNKADMDE 134
             R     YY     ++ V D TD+   +     +  + Q        +LV  NK D   
Sbjct: 74  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 133

Query: 135 SKRAVPTSKGQALAD--EYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           +  A   SK   L +  +       +SA     + E    +   IK+ 
Sbjct: 134 ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 181

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 76.2 bits (187), Expect = 2e-17
 Identities = 38/184 (20%), Positives = 65/184 (35%), Gaps = 25/184 (13%)

Query: 13  DYLIKLLLIGDSGVGKSCLL-LRFSDGSF--TTSFITTIGIDFKIRTIELDGKRIKLQIW 69
               ++LL+G    GKS +  + F   S   T    +T         I      +  QIW
Sbjct: 18  GSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNK--IYKDDISNSSF-VNFQIW 74

Query: 70  DTAGQERFRTIT---TAYYRGAMGILLVYDVTDES--SFNNIRNWIRNIEQHASDNVNKI 124
           D  GQ  F   T      +RG   ++ V D  D+   +   +   +    +   D     
Sbjct: 75  DFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPD--MNF 132

Query: 125 LV-GNKADM------DESKRAVPTSKGQALADE----YGIKFFETSAKTNLNVEEVFFSI 173
            V  +K D        E++R +       LAD       + F+ TS   + ++ E F  +
Sbjct: 133 EVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDH-SIFEAFSKV 191

Query: 174 ARDI 177
            + +
Sbjct: 192 VQKL 195

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 76.2 bits (188), Expect = 2e-17
 Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 20/174 (11%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G    GK+ +L +   G   T+ I TIG  F + T+E   K I   +WD  GQ+
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNICFTVWDVGGQD 84

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILV-GNKADMDE 134
           + R +   Y++   G++ V D  D        + ++ + Q        +LV  NK DM  
Sbjct: 85  KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDM-- 142

Query: 135 SKRAVPTSKGQALADEYG--------IKFFETSAKTNLNVEEVFFSIARDIKQR 180
              A+P S+   L D+ G             T A     + +    ++ ++ +R
Sbjct: 143 -PNAMPVSE---LTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 192

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 75.7 bits (187), Expect = 2e-17
 Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 13/171 (7%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           ++L L+G    GK+  +   + G F    I T+G  F +R I      + +++WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITK--GNVTIKLWDIGGQP 78

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILV-GNKADMDE 134
           RFR++   Y RG   I+ + D  D+      +N + N+          +LV GNK D+  
Sbjct: 79  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 138

Query: 135 SKRAVPTSKGQALADEYGIK-----FFETSAKTNLNVEEVFFSIARDIKQR 180
           +       +   L+    I+      +  S K   N++     + +  K R
Sbjct: 139 ALDEKELIEKMNLSA---IQDREICCYSISCKEKDNIDITLQWLIQHSKSR 186

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 75.0 bits (185), Expect = 4e-17
 Identities = 35/174 (20%), Positives = 74/174 (42%), Gaps = 20/174 (11%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           I++L++G    GK+ +L R   G   T+ + T+G    + T++   K I  ++WD  GQ 
Sbjct: 23  IRVLMLGLDNAGKTSILYRLHLGDVVTT-VPTVG--VNLETLQY--KNISFEVWDLGGQT 77

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILV-GNKADMDE 134
             R     Y+     ++ V D TD       ++ +  +        + +L+  NK D+  
Sbjct: 78  GVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDL-- 135

Query: 135 SKRAVPTSKGQALADEYG--------IKFFETSAKTNLNVEEVFFSIARDIKQR 180
              A   ++   +A++ G            ++S+KT   + E    +   ++++
Sbjct: 136 -PDAASEAE---IAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQ 185

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 75.0 bits (185), Expect = 4e-17
 Identities = 39/173 (22%), Positives = 73/173 (42%), Gaps = 8/173 (4%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           ++LL++G    GK+ +L +F+     T    T+G  F I+T+E   +  KL IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVDTI-SPTLG--FNIKTLEH--RGFKLNIWDVGGQK 73

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILV-GNKADMDE 134
             R+    Y+    G++ V D  D     + +  ++++          +L+  NK D+  
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 133

Query: 135 SKRAVPTSKGQALAD--EYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTD 185
           +       +   L     +  +    SA T  ++      +  DI  R+   D
Sbjct: 134 ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSRVFTAD 186

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 73.8 bits (182), Expect = 7e-17
 Identities = 39/174 (22%), Positives = 74/174 (42%), Gaps = 20/174 (11%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G    GK+ +L +   G   T+ I TIG  F + T+E   K I   +WD  GQ+
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 55

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILV-GNKADMDE 134
           + R +   Y++   G++ V D  D    N  R  +  +          +LV  NK D+  
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL-- 113

Query: 135 SKRAVPTSKGQALADEYG--------IKFFETSAKTNLNVEEVFFSIARDIKQR 180
              A+  ++   + D+ G             T A +   + E    ++  ++ +
Sbjct: 114 -PNAMNAAE---ITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 163

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 74.2 bits (183), Expect = 7e-17
 Identities = 35/175 (20%), Positives = 66/175 (37%), Gaps = 20/175 (11%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            K++++G    GK+ +L +FS      +   TIG    +  I +     +  +WD  GQE
Sbjct: 17  HKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG--SNVEEIVI--NNTRFLMWDIGGQE 71

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILV-GNKADMDE 134
             R+    YY     +++V D TD    +  R  +  +  H       +L+  NK D+  
Sbjct: 72  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV-- 129

Query: 135 SKRAVPTSKGQALADEYG--------IKFFETSAKTNLNVEEVFFSIARDIKQRL 181
            K  +  ++   ++                   A T   + +    +   +K RL
Sbjct: 130 -KECMTVAE---ISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRL 180

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 71.9 bits (177), Expect = 7e-16
 Identities = 33/171 (19%), Positives = 68/171 (39%), Gaps = 10/171 (5%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFIT-TIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           + +L +G    GK+ ++ +    +  +  I  TIG  F I   +     +   ++D +GQ
Sbjct: 22  VHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKS--SSLSFTVFDMSGQ 77

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK--ILV-GNKAD 131
            R+R +   YY+    I+ V D +D       +  +  +  H      +  IL   NK D
Sbjct: 78  GRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMD 137

Query: 132 MDESKRAVPTSKGQALAD--EYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           + ++  +V  S+   L +  +       + A     ++E    +   I+  
Sbjct: 138 LRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQTV 188

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 71.5 bits (176), Expect = 7e-16
 Identities = 33/174 (18%), Positives = 70/174 (40%), Gaps = 20/174 (11%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++LL+G    GK+ LL + +    +     T G  F I++++   +  KL +WD  GQ 
Sbjct: 17  VRILLLGLDNAGKTTLLKQLASEDISHI-TPTQG--FNIKSVQS--QGFKLNVWDIGGQR 71

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILV-GNKADMDE 134
           + R    +Y+     ++ V D  D   F      +  + +    +   +L+  NK D+  
Sbjct: 72  KIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLT 131

Query: 135 SKRAVPTSKGQALADEYG--------IKFFETSAKTNLNVEEVFFSIARDIKQR 180
           +  A        +A+            +    SA T   V++    + +++  +
Sbjct: 132 AAPA------SEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 179

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 73.1 bits (179), Expect = 1e-15
 Identities = 38/179 (21%), Positives = 74/179 (41%), Gaps = 22/179 (12%)

Query: 17  KLLLIGDSGVGKSCLL-LRFSDGSF--TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73
           KLLL+G SG GKS +  + FS+ S   T     TI ++     +   G  + L +WD  G
Sbjct: 5   KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLGN-MTLNLWDCGG 61

Query: 74  QERF-----RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KILV- 126
           Q+ F            ++    ++ V+DV       +I  + + ++Q    + + KI V 
Sbjct: 62  QDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVL 121

Query: 127 GNKADM--DESKRAVPTSKGQALADEYG------IKFFETSAKTNLNVEEVFFSIARDI 177
            +K D+   + +  +     + L++         +  F TS     ++ + +  I   +
Sbjct: 122 LHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDE-SLYKAWSQIVCSL 179

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 68.0 bits (167), Expect = 1e-14
 Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 20/164 (12%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            K++++G    GK+ +L +FS      +   TIG    +  I +     +  +WD  GQE
Sbjct: 22  HKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG--SNVEEIVI--NNTRFLMWDIGGQE 76

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILV-GNKADMDE 134
             R+    YY     +++V D TD    +  R  +  +  H       +L+  NK D+  
Sbjct: 77  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV-- 134

Query: 135 SKRAVPTSKGQALADEYG--------IKFFETSAKTNLNVEEVF 170
            K  +  ++   ++                   A T   + +  
Sbjct: 135 -KECMTVAE---ISQFLKLTSIKDHQWHIQACCALTGEGLCQGL 174

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 63.7 bits (156), Expect = 6e-13
 Identities = 34/172 (19%), Positives = 59/172 (34%), Gaps = 15/172 (8%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            KLL +G    GK+ LL    +    T    T         + +    IK   +D  G  
Sbjct: 24  GKLLFLGLDNAGKTTLLHMLKNDRLATL-QPTWH--PTSEELAI--GNIKFTTFDLGGHI 78

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILV-GNKADMDE 134
           + R +   Y+    GI+ + D  D   F+  R  +  +   A       ++ GNK D   
Sbjct: 79  QARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN 138

Query: 135 SKRAV---------PTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
           +              T+  Q +  +  ++ F  S        E F  +++ I
Sbjct: 139 AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 63.8 bits (156), Expect = 6e-13
 Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 6/118 (5%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            KL+ +G    GK+ LL    D       + T+        + +    +    +D  G  
Sbjct: 26  GKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLH--PTSEELTI--AGMTFTTFDLGGHI 80

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILV-GNKADM 132
           + R +   Y     GI+ + D  D       +  + ++    +     IL+ GNK D 
Sbjct: 81  QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDR 138

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 64.9 bits (158), Expect = 1e-12
 Identities = 38/172 (22%), Positives = 70/172 (40%), Gaps = 8/172 (4%)

Query: 12  YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
               +++L++G    GK+ +L +   G   T+ I TIG  F + T+E   K I   +WD 
Sbjct: 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDV 216

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILV-GNKA 130
            GQ++ R +   Y++   G++ V D  D    N  R  +  +          +LV  NK 
Sbjct: 217 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQ 276

Query: 131 DMDESKRAVPTSKGQALAD--EYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           D+  +  A   +    L            T A +   + E    ++  ++ +
Sbjct: 277 DLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 328

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 60.9 bits (148), Expect = 9e-12
 Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 9/126 (7%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQE 75
            +L +G    GK+ L +R   G +  +  T+I         ++ + +   L + D  G E
Sbjct: 9   AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSIT--DSSAIYKVNNNRGNSLTLIDLPGHE 65

Query: 76  RFR-TITTAYYRGAMGILLVYDVTD-ESSFNNIRNWIRNI--EQHASDNVNKILV-GNKA 130
             R  +   +   A  ++ V D    +    ++  ++  +  +  A  N   +L+  NK 
Sbjct: 66  SLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQ 125

Query: 131 DMDESK 136
           D+  +K
Sbjct: 126 DIAMAK 131

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 57.8 bits (140), Expect = 9e-11
 Identities = 20/129 (15%), Positives = 48/129 (37%), Gaps = 15/129 (11%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
            +++ G    GK+ LL   +  S   + + +            D     + + D  G  +
Sbjct: 50  SIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQE-----PLSAADYDGSGVTLVDFPGHVK 103

Query: 77  FRTITTAYYRGAM----GILLVYD-VTDESSFNNIRNWIRNI---EQHASDNVNKILV-G 127
            R   + Y +       G++ + D   D         ++ +I    + + +N   IL+  
Sbjct: 104 LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC 163

Query: 128 NKADMDESK 136
           NK+++  ++
Sbjct: 164 NKSELFTAR 172

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 56.7 bits (137), Expect = 3e-10
 Identities = 20/128 (15%), Positives = 48/128 (37%), Gaps = 15/128 (11%)

Query: 18  LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 77
           +++ G    GK+ LL   +  S   + + +            D     + + D  G  + 
Sbjct: 15  IIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQE-----PLSAADYDGSGVTLVDFPGHVKL 68

Query: 78  RTITTAYY----RGAMGILLVYD-VTDESSFNNIRNWIRNI---EQHASDNVNKILV-GN 128
           R   + Y     +   G++ + D   D         ++ +I    + + +N   IL+  N
Sbjct: 69  RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 128

Query: 129 KADMDESK 136
           K+++  ++
Sbjct: 129 KSELFTAR 136

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 56.2 bits (135), Expect = 9e-10
 Identities = 25/159 (15%), Positives = 58/159 (36%), Gaps = 20/159 (12%)

Query: 18  LLLIGDSGVGKSCLL-LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           +LL+G    GKS +  + F +     +    +               I L + +  GQ  
Sbjct: 2   VLLMGVRRCGKSSICKVVFHNMQPLDTL--YLESTSNPSLEHFSTL-IDLAVMELPGQLN 58

Query: 77  FR---TITTAYYRGAMGILLVYDVTD--ESSFNNIRNWIRNIEQHASDNVNKILVGNKAD 131
           +      +   ++    ++ V D  D   ++  N+   I    +  + ++N  ++ +K D
Sbjct: 59  YFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVD 117

Query: 132 M------DESKRAVPTSKGQALAD----EYGIKFFETSA 160
                   +++R +    G+ L +       + F+ TS 
Sbjct: 118 GLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSI 156

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 37/200 (18%), Positives = 72/200 (36%), Gaps = 33/200 (16%)

Query: 18  LLLIGDSGVGKSCLLLRFSDG-------SFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           +++ G   VGKS LL   +          FTT  I  +G          +    + QI D
Sbjct: 170 VVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGIN-VGQ--------FEDGYFRYQIID 220

Query: 71  TAG------QER----FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
           T G       ER     + I    Y G + I+ ++D + E     +   I   E+   + 
Sbjct: 221 TPGLLDRPISERNEIEKQAILALRYLGNL-IIYIFDPS-EHCGFPLEEQIHLFEEVHGEF 278

Query: 121 VNK--ILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIK 178
            +   ++V NK D+ + +      + +    E G+   + SA     ++ V   I + ++
Sbjct: 279 KDLPFLVVINKIDVADEENI---KRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLR 335

Query: 179 QRLADTDSRAEPQTIKINQP 198
                       + ++  + 
Sbjct: 336 PLAEKVAREKIERELRRYRS 355

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 7e-06
 Identities = 25/210 (11%), Positives = 53/210 (25%), Gaps = 62/210 (29%)

Query: 18  LLLIGDSGVGKSCL---LLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           +L+ G  G GK+ +   +                  DFKI              W     
Sbjct: 153 VLIDGVLGSGKTWVALDVCL--SYKVQCKM------DFKI-------------FWLNLKN 191

Query: 75  ER-----FRTITTAYYR--GAMGILLVYDVTDESSFNNIRNWIRNI---EQHAS-----D 119
                     +    Y+          +    +   ++I+  +R +   + + +      
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251

Query: 120 NVN------------KILV--GNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN 165
           NV             KIL+    K   D     +  +    ++ ++              
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTD----FLSAATTTHISLDHHSMTLTPD-----E 302

Query: 166 VEEVFFSIARDIKQRLADTDSRAEPQTIKI 195
           V+ +         Q L        P+ + I
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 27/135 (20%), Positives = 44/135 (32%), Gaps = 22/135 (16%)

Query: 16  IKLLLIGDSGVGKSCL---LLRFSDGS--FTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           + +L++G  GVGKS     L+    G      S     G+   + +  + G  I   I D
Sbjct: 37  MTVLVLGKGGVGKSSTVNSLI----GEQVVRVSPFQAEGLRPVMVSRTMGGFTIN--IID 90

Query: 71  TAG--------QERFRTITTAYYRGAMGILLVYDVTDESSF-NNIRNWIRNIEQHASDNV 121
           T G         +    I        + +LL  D  D  +     +  +  I Q     +
Sbjct: 91  TPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEI 150

Query: 122 NK--ILVGNKADMDE 134
               +LV   A    
Sbjct: 151 WCKTLLVLTHAQFSP 165

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172

 Score = 42.5 bits (101), Expect = 2e-05
 Identities = 27/123 (21%), Positives = 42/123 (34%), Gaps = 23/123 (18%)

Query: 56  TIELDGKRIKLQIWDTAGQ-------ERF---RTITTAYYRGAMGILLVYDVTDESSFNN 105
            I +DG  + L I DTAG        ER    R         A  +L + D T   +  +
Sbjct: 46  HIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEI--EQADRVLFMVDGTTTDA-VD 100

Query: 106 IRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN 165
                          +   +V NKAD+        T +   +++  G      SA+T   
Sbjct: 101 PAEIWPEFIARLPAKLPITVVRNKADI--------TGETLGMSEVNGHALIRLSARTGEG 152

Query: 166 VEE 168
           V+ 
Sbjct: 153 VDV 155

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 26/152 (17%), Positives = 47/152 (30%), Gaps = 24/152 (15%)

Query: 56  TIELDGKRIKLQIWDTAGQ-------ERF---RTITTAYYRGAMGILLVYDVTDESSFNN 105
               D      ++ DTAG        E     R+        A  IL + D+  E   + 
Sbjct: 275 CFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM--AEADLILYLLDLGTERLDDE 330

Query: 106 IRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN 165
           +         H       + V NK D      A   +  +A+AD  G +    SA     
Sbjct: 331 LTEIRELKAAHP--AAKFLTVANKLDRA----ANADALIRAIADGTGTEVIGISALNGDG 384

Query: 166 VEEVFFSIARDIKQRLADTDSRAEPQTIKINQ 197
           ++     + + +   + + D   E   +  + 
Sbjct: 385 IDT----LKQHMGDLVKNLDKLHEASVLVTSL 412

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Length = 228

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 38/186 (20%), Positives = 63/186 (33%), Gaps = 36/186 (19%)

Query: 18  LLLIGDSGVGKSCLLLRFSDGS-------FTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           ++L G   VGKS  +   S  +       FTT        +  +   +    +   QI D
Sbjct: 32  IILSGAPNVGKSSFMNIVSRANVDVQSYSFTT-------KNLYVGHFDHKLNKY--QIID 82

Query: 71  TAG-----------QERFRTITTAYYRGAMGILLVYDVTDES--SFNNIRNWIRNIEQHA 117
           T G            E       A+  G   IL + D++++   +     N   +I+   
Sbjct: 83  TPGLLDRAFENRNTIEMTTITALAHINGV--ILFIIDISEQCGLTIKEQINLFYSIKSVF 140

Query: 118 SDNVNKILVGNKADM----DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173
           S N + ++  NK D       S       K      +  IKF   S  T + VE+   + 
Sbjct: 141 S-NKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITA 199

Query: 174 ARDIKQ 179
              +K 
Sbjct: 200 CELLKN 205

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 42.8 bits (100), Expect = 3e-05
 Identities = 24/175 (13%), Positives = 49/175 (28%), Gaps = 10/175 (5%)

Query: 13  DYLIKLLLIGDSGVGKSCLL--LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
             ++ + + G++G GKS  +  LR        +  T +      R          +  WD
Sbjct: 67  SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWD 126

Query: 71  TAG--QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGN 128
             G     F   T               ++      N  +  + I            V  
Sbjct: 127 LPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMM---KKEFYFVRT 183

Query: 129 KADMD---ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           K D D   E+     T   + +  +  +    T  +  +    +F    +++   
Sbjct: 184 KVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHY 238

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270

 Score = 41.9 bits (98), Expect = 7e-05
 Identities = 21/135 (15%), Positives = 41/135 (30%), Gaps = 22/135 (16%)

Query: 16  IKLLLIGDSGVGKSCL---LLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTA 72
           + +L++G  GVGKS     ++   +   + S   + G    + +    G    L I DT 
Sbjct: 40  LTILVMGKGGVGKSSTVNSIIG--ERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTP 95

Query: 73  G-----------QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNV 121
           G               ++      +    +L V  +      N  +   + I       +
Sbjct: 96  GLIEGGYINDMALNIIKSFLLD--KTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGI 153

Query: 122 NK--ILVGNKADMDE 134
               I+    A    
Sbjct: 154 WNKAIVALTHAQFSP 168

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427

 Score = 39.0 bits (90), Expect = 7e-04
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 18  LLLIGDSGVGKSCLL--LRFSDGSFTTSFITTIGIDFKIRTIEL--DGKRIKLQIWDTAG 73
           +L +G++G+GKS L+  L  +      +  T  G+  +  T +L     R+KL I  T G
Sbjct: 45  ILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVG 104

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	216
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	100.0
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.98
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.98
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.98
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.97
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.97
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.97
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.97
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.97
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.97
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.97
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.97
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.97
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.97
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.97
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.97
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.97
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.97
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.97
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.97
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.96
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.96
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.96
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.96
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.96
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.96
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.96
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.96
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.93
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.96
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.95
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.95
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.95
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.95
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.95
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.95
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.94
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.94
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.94
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.94
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.94
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.94
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.94
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.93
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.93
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.93
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.93
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.93
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.93
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.92
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.92
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.92
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.91
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.91
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.91
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.9
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.9
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.89
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.89
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.89
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.89
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.89
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.89
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.89
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.89
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.88
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.87
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.87
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.87
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.87
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.87
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.87
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.87
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.87
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.87
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.87
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.87
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.86
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.86
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.86
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.86
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.86
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.86
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.85
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.84
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.84
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.84
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.84
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.84
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.83
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.83
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.83
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.83
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.83
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.83
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.83
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.82
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.82
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.82
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.81
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.81
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.8
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.8
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.79
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.78
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.78
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.78
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.75
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.75
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.75
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.74
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.74
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.74
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.74
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.73
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.73
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.73
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.72
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.7
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.7
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.68
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.66
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.65
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.65
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.63
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.6
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.59
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.59
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.59
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.57
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.56
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.53
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.53
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.52
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.48
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.47
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.43
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.42
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.39
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.33
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.31
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.27
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.06
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.01
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.96
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.95
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.95
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.88
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.85
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.81
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.77
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.52
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.52
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.43
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.37
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.31
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.29
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.22
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.17
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.16
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.11
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.02
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.96
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.71
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.67
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.52
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.38
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.37
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.35
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.28
2xxa_A	433	Signal recognition particle protein; protein trans	97.27
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.26
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.24
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.22
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.22
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.19
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.19
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.19
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.17
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.15
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.15
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.14
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.13
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.09
3cwq_A	209	Para family chromosome partitioning protein; alpha	97.08
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.07
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.07
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.06
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.02
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.02
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.02
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.01
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.01
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.0
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.0
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.98
1g6h_A	257	High-affinity branched-chain amino acid transport	96.98
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.98
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.97
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.96
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.96
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.96
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.95
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.95
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	96.95
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.95
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.95
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.94
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.93
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.93
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.92
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.92
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.92
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.92
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.92
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.91
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.91
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.89
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.89
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.89
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.87
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.87
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.86
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.86
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.85
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.83
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.82
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.81
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.8
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.8
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.8
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.8
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.8
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.8
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.79
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.79
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.79
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.79
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.78
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.78
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.77
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.77
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.77
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.77
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.75
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.75
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.75
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.74
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.72
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.72
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.71
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.71
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.71
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.69
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.69
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.68
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.67
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.66
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.66
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.65
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.65
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.65
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.64
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.64
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.64
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.62
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.61
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.61
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.61
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.61
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.6
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.59
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.58
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.58
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.58
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.57
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.57
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.56
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.55
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.54
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.53
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.53
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.52
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.52
1via_A	175	Shikimate kinase; structural genomics, transferase	96.5
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.5
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.5
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.49
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.49
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.48
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.48
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.48
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.47
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.46
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.45
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.45
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.45
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.43
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.41
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.41
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.41
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.4
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.39
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.38
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.37
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.36
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.35
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.34
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.34
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.33
2og2_A	359	Putative signal recognition particle receptor; nuc	96.32
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.32
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.32
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.31
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.3
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.3
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.29
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.29
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.28
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.28
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.26
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.25
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.23
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.23
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.22
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.22
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.22
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.19
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.19
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.19
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.19
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.17
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.16
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.14
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.13
3co5_A	143	Putative two-component system transcriptional RES	96.12
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.12
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.08
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.08
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.06
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.05
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.05
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.05
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.04
3bos_A	242	Putative DNA replication factor; P-loop containing	96.04
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.04
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.02
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.0
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	95.98
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	95.97
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.94
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	95.92
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	95.91
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.91
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.9
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	95.88
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.82
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.81
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.81
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.8
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.77
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.77
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.75
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	95.74
3uc9_A	233	Increased recombination centers protein 6; rossman	95.74
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	95.72
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.71
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.71
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	95.7
2chg_A	226	Replication factor C small subunit; DNA-binding pr	95.7
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.68
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.68
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	95.66
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.66
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.65
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	95.62
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.58
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.58
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.57
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.57
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.55
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.55
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.55
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.54
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	95.52
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.51
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.5
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	95.42
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.41
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.36
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.35
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.34
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.34
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.32
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.31
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.3
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.3
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.29
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.27
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.26
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.22
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.22
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	95.18
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.18
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.15
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.12
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.1
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	95.08
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.08
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.07
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.05
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.04
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	95.04
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.03
2qgz_A	308	Helicase loader, putative primosome component; str	94.95
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	94.94
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	94.94
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	94.91
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	94.89
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	94.88
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	94.88
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	94.87
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	94.86
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	94.86
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	94.84
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	94.8
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	94.8
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	94.79
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	94.79
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	94.79

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=1.3e-41  Score=256.62  Aligned_cols=169  Identities=38%  Similarity=0.679  Sum_probs=144.7

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ...+||+|+|.+|||||||++++....+...+.++.+.++....+..++..+.+.||||+|++.|..++..+++.++++|
T Consensus        11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i   90 (216)
T 4dkx_A           11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV   90 (216)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred             CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence            34589999999999999999999999999999999998988889999999999999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS  172 (216)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  172 (216)
                      +|||++++++|..+..|+..+......+.|++||+||+|+.+ .+.+..+++..++..+++.|++|||++|.||+++|++
T Consensus        91 lv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~-~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~  169 (216)
T 4dkx_A           91 VVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD-KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRR  169 (216)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHh-cCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHH
Confidence            999999999999999999999888777899999999999965 5678899999999999999999999999999999999


Q ss_pred             HHHHHHHHhh
Q 027949          173 IARDIKQRLA  182 (216)
Q Consensus       173 l~~~i~~~~~  182 (216)
                      |++.+.....
T Consensus       170 i~~~i~~~~~  179 (216)
T 4dkx_A          170 VAAALPGMES  179 (216)
T ss_dssp             HHHHC-----
T ss_pred             HHHHHHhhhc
Confidence            9998876543

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=1.6e-36  Score=227.33  Aligned_cols=173  Identities=58%  Similarity=1.022  Sum_probs=156.3

Q ss_pred             CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027949           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      ..++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (206)
T 2bcg_Y            4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG   83 (206)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence            35677999999999999999999999999888888888888888888899988999999999999999999999999999


Q ss_pred             EEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q 027949           91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF  170 (216)
Q Consensus        91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  170 (216)
                      +|+|||++++.++..+..|+..+......+.|++||+||+|+.+ .+....+++..++...+++++++||++|.|++++|
T Consensus        84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  162 (206)
T 2bcg_Y           84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD-KRVVEYDVAKEFADANKMPFLETSALDSTNVEDAF  162 (206)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999887766899999999999965 34566778888999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcc
Q 027949          171 FSIARDIKQRLADT  184 (216)
Q Consensus       171 ~~l~~~i~~~~~~~  184 (216)
                      .+|.+.+.+.....
T Consensus       163 ~~l~~~i~~~~~~~  176 (206)
T 2bcg_Y          163 LTMARQIKESMSQQ  176 (206)
T ss_dssp             HHHHHHHHHHCCHH
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999998875544

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=3.9e-36  Score=224.96  Aligned_cols=195  Identities=32%  Similarity=0.573  Sum_probs=148.7

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      ....++|+|+|.+|||||||+++|.+..+...+.++.+... ...+.+++..+.+.+||+||.+.+...+..+++.+|++
T Consensus        11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   89 (206)
T 2bov_A           11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF   89 (206)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence            34569999999999999999999999888777777666443 45677888888999999999999999999999999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q 027949           92 LLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF  170 (216)
Q Consensus        92 i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  170 (216)
                      |+|||++++.++..+..|+..+..... .+.|++||+||+|+.+ ......+++..++..++++++++||++|.|++++|
T Consensus        90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  168 (206)
T 2bov_A           90 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED-KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF  168 (206)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccc-cccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHH
Confidence            999999999999999999988877653 4799999999999965 34567788889999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcccCCCCCccccccCCCCccchhhhccCCCCcCC
Q 027949          171 FSIARDIKQRLADTDSRAEPQTIKINQPDQAGGAAQAAQRSACCGS  216 (216)
Q Consensus       171 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~  216 (216)
                      .+|++.+.++..........        ....++.+++++++||.|
T Consensus       169 ~~l~~~i~~~~~~~~~~~~~--------~~~~~~~~~~~~~~Cc~~  206 (206)
T 2bov_A          169 FDLMREIRARKMEDSKEKNG--------KKKRKSLAKRIRERCCIL  206 (206)
T ss_dssp             HHHHHHHHHHHHHHC-------------------------------
T ss_pred             HHHHHHHHHccccccccccC--------cccccchhhccccceecC
Confidence            99999998875443322211        122223356667788876

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=1.3e-35  Score=222.33  Aligned_cols=172  Identities=38%  Similarity=0.708  Sum_probs=150.0

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      ....++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC   84 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence            45679999999999999999999999998888888888888888888888889999999999999999999999999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCCccChHHHHHHHH-HhCCeEEEEecCCCCCH
Q 027949           92 LLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKILVGNKADMDESKRAVPTSKGQALAD-EYGIKFFETSAKTNLNV  166 (216)
Q Consensus        92 i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi  166 (216)
                      |+|||++++.++..+..|+..+.....    .+.|+++|+||+|+.+  .....+++..++. ..+++++++||++|.|+
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  162 (207)
T 1vg8_A           85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN--RQVATKRAQAWCYSKNNIPYFETSAKEAINV  162 (207)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC--CCSCHHHHHHHHHHTTSCCEEECBTTTTBSH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcc--cccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence            999999999999999999888876543    4689999999999863  4456677777777 56789999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccc
Q 027949          167 EEVFFSIARDIKQRLADTD  185 (216)
Q Consensus       167 ~~l~~~l~~~i~~~~~~~~  185 (216)
                      +++|++|.+.+.+......
T Consensus       163 ~~l~~~l~~~~~~~~~~~~  181 (207)
T 1vg8_A          163 EQAFQTIARNALKQETEVE  181 (207)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccc
Confidence            9999999999988765543

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-35  Score=223.38  Aligned_cols=173  Identities=49%  Similarity=0.838  Sum_probs=145.3

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      .++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus        10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v   89 (223)
T 3cpj_B           10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA   89 (223)
T ss_dssp             CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred             CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence            46779999999999999999999999998877888888888888888999889999999999999999999999999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q 027949           92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFF  171 (216)
Q Consensus        92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  171 (216)
                      |+|||++++.++..+..|+..+......+.|++||+||+|+.+ ...+..+++..++...+++++++||++|.|++++|+
T Consensus        90 ilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  168 (223)
T 3cpj_B           90 LIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAH-LRAVPTEESKTFAQENQLLFTETSALNSENVDKAFE  168 (223)
T ss_dssp             EEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGG-GCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999999999998877666799999999999864 345667788889999999999999999999999999


Q ss_pred             HHHHHHHHHhhccc
Q 027949          172 SIARDIKQRLADTD  185 (216)
Q Consensus       172 ~l~~~i~~~~~~~~  185 (216)
                      +|.+.+.++.....
T Consensus       169 ~l~~~i~~~~~~~~  182 (223)
T 3cpj_B          169 ELINTIYQKVSKHQ  182 (223)
T ss_dssp             HHHHHHTTCC----
T ss_pred             HHHHHHHHHhhhcc
Confidence            99999987665544

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=7e-35  Score=214.34  Aligned_cols=174  Identities=71%  Similarity=1.189  Sum_probs=128.0

Q ss_pred             CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027949           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      +.++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (183)
T 2fu5_C            4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   83 (183)
T ss_dssp             CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred             ccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCE
Confidence            45678999999999999999999999988877788888888888888889988999999999999999999999999999


Q ss_pred             EEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q 027949           91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF  170 (216)
Q Consensus        91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  170 (216)
                      +|+|||++++.++..+..|+..+......+.|+++|+||+|+.+ ...+..+++..++..++++++++||++|.|++++|
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  162 (183)
T 2fu5_C           84 IMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAF  162 (183)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS-CCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCc-cCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            99999999999999999999998887666899999999999965 34567788889999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccc
Q 027949          171 FSIARDIKQRLADTD  185 (216)
Q Consensus       171 ~~l~~~i~~~~~~~~  185 (216)
                      .+|.+.+.++..+..
T Consensus       163 ~~l~~~i~~~~~~~~  177 (183)
T 2fu5_C          163 FTLARDIKAKMDKNW  177 (183)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhhccc
Confidence            999999988766544

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=3.7e-34  Score=211.74  Aligned_cols=175  Identities=52%  Similarity=0.925  Sum_probs=156.0

Q ss_pred             ccCCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 027949            7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR   86 (216)
Q Consensus         7 ~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   86 (216)
                      ..+...++.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++
T Consensus        14 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   93 (189)
T 2gf9_A           14 LVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYR   93 (189)
T ss_dssp             CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGT
T ss_pred             CCCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhcc
Confidence            34456678899999999999999999999999888777788887887788888888899999999999999999999999


Q ss_pred             cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCH
Q 027949           87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV  166 (216)
Q Consensus        87 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  166 (216)
                      .+|++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+ ......+++..++..++++++++||++|.|+
T Consensus        94 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  172 (189)
T 2gf9_A           94 GAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLED-ERVVPAEDGRRLADDLGFEFFEASAKENINV  172 (189)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc-ccCCCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence            999999999999999999999999998887666899999999999964 3456677888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 027949          167 EEVFFSIARDIKQRLA  182 (216)
Q Consensus       167 ~~l~~~l~~~i~~~~~  182 (216)
                      +++|++|.+.+.++.+
T Consensus       173 ~~l~~~l~~~i~~~~~  188 (189)
T 2gf9_A          173 KQVFERLVDVICEKMN  188 (189)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999987653

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=3.2e-34  Score=212.51  Aligned_cols=176  Identities=49%  Similarity=0.877  Sum_probs=153.8

Q ss_pred             ccCCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 027949            7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR   86 (216)
Q Consensus         7 ~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   86 (216)
                      .......+.+||+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++
T Consensus        13 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   92 (191)
T 2a5j_A           13 GLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYR   92 (191)
T ss_dssp             CCCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHT
T ss_pred             ccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhc
Confidence            34456778899999999999999999999999888777788888888888889998899999999999999999999999


Q ss_pred             cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCH
Q 027949           87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV  166 (216)
Q Consensus        87 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  166 (216)
                      .+|++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+ ...+..+++..++...+++++++||++|.|+
T Consensus        93 ~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi  171 (191)
T 2a5j_A           93 GAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES-RRDVKREEGEAFAREHGLIFMETSAKTACNV  171 (191)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEEECTTTCTTH
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCC-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence            999999999999999999999999999887666899999999999964 3456678888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhc
Q 027949          167 EEVFFSIARDIKQRLAD  183 (216)
Q Consensus       167 ~~l~~~l~~~i~~~~~~  183 (216)
                      +++|++|.+.+.++..+
T Consensus       172 ~~l~~~l~~~i~~~~~~  188 (191)
T 2a5j_A          172 EEAFINTAKEIYRKIQQ  188 (191)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999887543

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=4.9e-34  Score=211.90  Aligned_cols=176  Identities=63%  Similarity=1.069  Sum_probs=157.4

Q ss_pred             CCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027949            9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   88 (216)
Q Consensus         9 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   88 (216)
                      ....++.++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+
T Consensus        10 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   89 (196)
T 3tkl_A           10 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA   89 (196)
T ss_dssp             -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTC
T ss_pred             CcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhC
Confidence            34556789999999999999999999999998888888888889889999999889999999999999999999999999


Q ss_pred             cEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHH
Q 027949           89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE  168 (216)
Q Consensus        89 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (216)
                      |++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+ ...........++..++++++++||++|.|+++
T Consensus        90 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  168 (196)
T 3tkl_A           90 HGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT-KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQ  168 (196)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc-ccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence            9999999999999999999999999888777899999999999965 455677888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccc
Q 027949          169 VFFSIARDIKQRLADTD  185 (216)
Q Consensus       169 l~~~l~~~i~~~~~~~~  185 (216)
                      +|.+|.+.+.++.....
T Consensus       169 l~~~l~~~i~~~~~~~~  185 (196)
T 3tkl_A          169 SFMTMAAEIKKRMGPGA  185 (196)
T ss_dssp             HHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHhcccc
Confidence            99999999988765443

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=5.2e-34  Score=210.10  Aligned_cols=178  Identities=46%  Similarity=0.787  Sum_probs=158.0

Q ss_pred             ccCCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 027949            7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR   86 (216)
Q Consensus         7 ~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   86 (216)
                      +|....++.++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++
T Consensus         2 ~m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   81 (186)
T 2bme_A            2 HMSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYR   81 (186)
T ss_dssp             --CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTST
T ss_pred             CcccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHh
Confidence            34555678899999999999999999999999988888888888888888889998899999999999999999999999


Q ss_pred             cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCH
Q 027949           87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV  166 (216)
Q Consensus        87 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  166 (216)
                      .+|++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+ .......++..++...+++++++||++|.|+
T Consensus        82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  160 (186)
T 2bme_A           82 GAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA-DREVTFLEASRFAQENELMFLETSALTGENV  160 (186)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred             cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCH
Confidence            999999999999999999999999888877667899999999999964 3456677888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccc
Q 027949          167 EEVFFSIARDIKQRLADTD  185 (216)
Q Consensus       167 ~~l~~~l~~~i~~~~~~~~  185 (216)
                      +++|++|.+.+.++.....
T Consensus       161 ~~l~~~l~~~~~~~~~~~~  179 (186)
T 2bme_A          161 EEAFVQCARKILNKIESGE  179 (186)
T ss_dssp             HHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHhhhcC
Confidence            9999999999998765544

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=1.9e-34  Score=215.53  Aligned_cols=174  Identities=48%  Similarity=0.867  Sum_probs=145.6

Q ss_pred             ccCCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 027949            7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR   86 (216)
Q Consensus         7 ~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   86 (216)
                      ..+.+.++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++
T Consensus        21 ~~~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~  100 (201)
T 2hup_A           21 DPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYR  100 (201)
T ss_dssp             -----CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHT
T ss_pred             CcccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHh
Confidence            34456778899999999999999999999999887777788877888888888988899999999999999999999999


Q ss_pred             cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEecCCCCC
Q 027949           87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLN  165 (216)
Q Consensus        87 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g  165 (216)
                      .+|++|+|||++++.++..+..|+..+......+.|++||+||+|+.+ .+.+..+++..++...++ +++++||++|.|
T Consensus       101 ~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g  179 (201)
T 2hup_A          101 SANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE-LREVSLAEAQSLAEHYDILCAIETSAKDSSN  179 (201)
T ss_dssp             TCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCSEEEECBTTTTBS
T ss_pred             hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccc-ccccCHHHHHHHHHHcCCCEEEEEeCCCCCC
Confidence            999999999999999999999999998887666899999999999964 345677888999999998 999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 027949          166 VEEVFFSIARDIKQRL  181 (216)
Q Consensus       166 i~~l~~~l~~~i~~~~  181 (216)
                      ++++|++|.+.+.++.
T Consensus       180 i~~l~~~l~~~i~~~~  195 (201)
T 2hup_A          180 VEEAFLRVATELIMRH  195 (201)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999998754

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.8e-34  Score=213.40  Aligned_cols=174  Identities=47%  Similarity=0.848  Sum_probs=155.3

Q ss_pred             CCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027949            9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   88 (216)
Q Consensus         9 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   88 (216)
                      +...++.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||.+.+...+..+++.+
T Consensus        20 ~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~   99 (201)
T 2ew1_A           20 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSA   99 (201)
T ss_dssp             --CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTC
T ss_pred             ccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcC
Confidence            34567789999999999999999999999988888888888888888899999889999999999999999999999999


Q ss_pred             cEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHH
Q 027949           89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE  168 (216)
Q Consensus        89 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (216)
                      |++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+ .+.+..+++..++...+++++++||++|.|+++
T Consensus       100 d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  178 (201)
T 2ew1_A          100 NALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE-RREVSQQRAEEFSEAQDMYYLETSAKESDNVEK  178 (201)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999999999999998887666899999999999864 345667788889999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhc
Q 027949          169 VFFSIARDIKQRLAD  183 (216)
Q Consensus       169 l~~~l~~~i~~~~~~  183 (216)
                      +|.+|.+.+.++...
T Consensus       179 l~~~l~~~i~~~~~~  193 (201)
T 2ew1_A          179 LFLDLACRLISEARQ  193 (201)
T ss_dssp             HHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999876543

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=6e-34  Score=211.22  Aligned_cols=176  Identities=43%  Similarity=0.791  Sum_probs=154.9

Q ss_pred             ccCCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 027949            7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR   86 (216)
Q Consensus         7 ~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   86 (216)
                      ..+++.++.++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+..++..+.+.+||+||.+.+...+..+++
T Consensus        17 ~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   96 (193)
T 2oil_A           17 RGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYR   96 (193)
T ss_dssp             ---CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHT
T ss_pred             ccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhc
Confidence            34456778899999999999999999999999888777788787787788888888899999999999999999999999


Q ss_pred             cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCH
Q 027949           87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV  166 (216)
Q Consensus        87 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  166 (216)
                      .+|++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+ ......+++..++...+++++++||++|.|+
T Consensus        97 ~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  175 (193)
T 2oil_A           97 GAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQ-AREVPTEEARMFAENNGLLFLETSALDSTNV  175 (193)
T ss_dssp             TCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEEECTTTCTTH
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence            999999999999999999999999988876666899999999999965 3456677888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhc
Q 027949          167 EEVFFSIARDIKQRLAD  183 (216)
Q Consensus       167 ~~l~~~l~~~i~~~~~~  183 (216)
                      +++|++|.+.+.++..+
T Consensus       176 ~~l~~~l~~~i~~~~~~  192 (193)
T 2oil_A          176 ELAFETVLKEIFAKVSK  192 (193)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            99999999999876543

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.1e-33  Score=207.15  Aligned_cols=174  Identities=56%  Similarity=0.945  Sum_probs=153.7

Q ss_pred             CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027949           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (216)
                      ...++.++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus         4 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   83 (181)
T 3tw8_B            4 RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTH   83 (181)
T ss_dssp             --CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCS
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCC
Confidence            45567899999999999999999999999888888888888888889999998899999999999999999999999999


Q ss_pred             EEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q 027949           90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEV  169 (216)
Q Consensus        90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  169 (216)
                      ++|+|||++++.++..+..|+..+..... +.|+++|+||+|+.+ .......+...++...+++++++||++|.|++++
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  161 (181)
T 3tw8_B           84 GVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPE-RKVVETEDAYKFAGQMGIQLFETSAKENVNVEEM  161 (181)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHCT-TSEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCCCch-hcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence            99999999999999999999998877654 689999999999865 4556778888999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccc
Q 027949          170 FFSIARDIKQRLADTD  185 (216)
Q Consensus       170 ~~~l~~~i~~~~~~~~  185 (216)
                      |++|.+.+.+...+..
T Consensus       162 ~~~l~~~~~~~~~~~~  177 (181)
T 3tw8_B          162 FNCITELVLRAKKDNL  177 (181)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhhhhh
Confidence            9999999988766544

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=3.3e-33  Score=208.79  Aligned_cols=173  Identities=51%  Similarity=0.947  Sum_probs=155.5

Q ss_pred             CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027949           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      ..++.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||.+.+...+..+++.+|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (203)
T 1zbd_A            4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG   83 (203)
T ss_dssp             SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence            34577999999999999999999999998887777888878888888888888999999999999999999999999999


Q ss_pred             EEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q 027949           91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF  170 (216)
Q Consensus        91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  170 (216)
                      +|+|||++++.++..+..|+..+......+.|+++|+||+|+.+ ......+.+..++..++++++++||++|.|++++|
T Consensus        84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  162 (203)
T 1zbd_A           84 FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED-ERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF  162 (203)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTT-SCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCc-ccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHH
Confidence            99999999999999999999998877666899999999999965 34567788889999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcc
Q 027949          171 FSIARDIKQRLADT  184 (216)
Q Consensus       171 ~~l~~~i~~~~~~~  184 (216)
                      ++|.+.+.++..+.
T Consensus       163 ~~l~~~i~~~~~~~  176 (203)
T 1zbd_A          163 ERLVDVICEKMSES  176 (203)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999998876654

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.1e-34  Score=215.08  Aligned_cols=174  Identities=53%  Similarity=0.960  Sum_probs=156.1

Q ss_pred             cCCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q 027949            8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG   87 (216)
Q Consensus         8 ~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   87 (216)
                      +..+.++.+||+|+|.+|+|||||+++|++..+...+.++.+.+.....+..++..+.+.+||+||++.+..++..+++.
T Consensus        16 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   95 (191)
T 3dz8_A           16 FQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRG   95 (191)
T ss_dssp             ETTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTT
T ss_pred             cccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHcc
Confidence            34456788999999999999999999999998888888888888888888887777899999999999999999999999


Q ss_pred             ccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHH
Q 027949           88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE  167 (216)
Q Consensus        88 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  167 (216)
                      +|++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+ ......+++..++...+++++++||++|.|++
T Consensus        96 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  174 (191)
T 3dz8_A           96 AMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE-ERVVPTEKGQLLAEQLGFDFFEASAKENISVR  174 (191)
T ss_dssp             CCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-ccccCHHHHHHHHHHcCCeEEEEECCCCCCHH
Confidence            99999999999999999999999999887767899999999999864 45677788899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 027949          168 EVFFSIARDIKQRLA  182 (216)
Q Consensus       168 ~l~~~l~~~i~~~~~  182 (216)
                      ++|++|.+.+.++..
T Consensus       175 ~l~~~l~~~i~~~~~  189 (191)
T 3dz8_A          175 QAFERLVDAICDKMS  189 (191)
T ss_dssp             HHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999987754

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=1.5e-33  Score=204.53  Aligned_cols=167  Identities=38%  Similarity=0.780  Sum_probs=142.9

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      .++.++|+|+|.+|+|||||++++++..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            35679999999999999999999999988877888888888878888888889999999999999999999999999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q 027949           92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFF  171 (216)
Q Consensus        92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  171 (216)
                      |+|+|++++.++..+..|+..+......+.|+++|+||+|+.+ ......+++..++...+++++++||++|.|++++|+
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (170)
T 1z08_A           83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK-ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL  161 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc-ccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence            9999999999999999999888776655799999999999865 345667888899999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027949          172 SIARDIKQ  179 (216)
Q Consensus       172 ~l~~~i~~  179 (216)
                      +|.+.+.+
T Consensus       162 ~l~~~~~~  169 (170)
T 1z08_A          162 DLCKRMIE  169 (170)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhh
Confidence            99988753

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=1.7e-33  Score=204.11  Aligned_cols=166  Identities=61%  Similarity=1.098  Sum_probs=144.6

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      +.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            46999999999999999999999998887788888888888888888888999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q 027949           94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI  173 (216)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  173 (216)
                      |+|++++.++..+..|+..+......+.|+++|+||+|+.  ......+++..++..++++++++||++|.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l  159 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL  159 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT--TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC--cCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            9999999999999999999888776689999999999993  34567788888999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 027949          174 ARDIKQRL  181 (216)
Q Consensus       174 ~~~i~~~~  181 (216)
                      .+.+.++.
T Consensus       160 ~~~~~~~~  167 (170)
T 1g16_A          160 AKLIQEKI  167 (170)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHHh
Confidence            99987653

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=2e-33  Score=209.84  Aligned_cols=175  Identities=45%  Similarity=0.772  Sum_probs=145.6

Q ss_pred             CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027949           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (216)
                      .+.+..++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+||+||.+.+...+..+++.+|
T Consensus        20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d   99 (200)
T 2o52_A           20 IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA   99 (200)
T ss_dssp             --CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCS
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCC
Confidence            34567899999999999999999999999888777888888888888888988899999999999999999999999999


Q ss_pred             EEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q 027949           90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEV  169 (216)
Q Consensus        90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  169 (216)
                      ++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+ .......++..++...+++++++||++|.|++++
T Consensus       100 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  178 (200)
T 2o52_A          100 GALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDP-EREVTFLEASRFAQENELMFLETSALTGENVEEA  178 (200)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            999999999999999999999988877666899999999999864 3456677888899999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccc
Q 027949          170 FFSIARDIKQRLADTD  185 (216)
Q Consensus       170 ~~~l~~~i~~~~~~~~  185 (216)
                      |++|.+.+.++.....
T Consensus       179 ~~~l~~~i~~~~~~~~  194 (200)
T 2o52_A          179 FLKCARTILNKIDSGE  194 (200)
T ss_dssp             HHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHhcCC
Confidence            9999999988765543

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.1e-33  Score=209.81  Aligned_cols=173  Identities=45%  Similarity=0.876  Sum_probs=144.8

Q ss_pred             ccCCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 027949            7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR   86 (216)
Q Consensus         7 ~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   86 (216)
                      ..+...+..++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+||+||.+.+...+..+++
T Consensus        18 ~~p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~   97 (192)
T 2il1_A           18 GSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYR   97 (192)
T ss_dssp             ----CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHH
T ss_pred             CCCcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhc
Confidence            34455678899999999999999999999998887777788888888888889998899999999999999998999999


Q ss_pred             cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh-CCeEEEEecCCCCC
Q 027949           87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEY-GIKFFETSAKTNLN  165 (216)
Q Consensus        87 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~g  165 (216)
                      .+|++|+|||++++.++..+..|+..+......+.|++||+||+|+.+ .+.+..+++..++... +++++++||++|.|
T Consensus        98 ~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g  176 (192)
T 2il1_A           98 SAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET-DREITRQQGEKFAQQITGMRFCEASAKDNFN  176 (192)
T ss_dssp             HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHTSTTCEEEECBTTTTBS
T ss_pred             CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc-ccccCHHHHHHHHHhcCCCeEEEEeCCCCCC
Confidence            999999999999999999999999888887767899999999999864 3456667788888774 78999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 027949          166 VEEVFFSIARDIKQR  180 (216)
Q Consensus       166 i~~l~~~l~~~i~~~  180 (216)
                      ++++|++|.+.+.++
T Consensus       177 i~~l~~~l~~~i~~~  191 (192)
T 2il1_A          177 VDEIFLKLVDDILKK  191 (192)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999988754

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=3.1e-33  Score=204.38  Aligned_cols=169  Identities=47%  Similarity=0.868  Sum_probs=151.2

Q ss_pred             CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027949           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (216)
                      ...++.++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|
T Consensus        10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   89 (179)
T 1z0f_A           10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA   89 (179)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred             cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence            34567899999999999999999999999988777888888888888888988899999999999999999999999999


Q ss_pred             EEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q 027949           90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEV  169 (216)
Q Consensus        90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  169 (216)
                      ++|+|+|++++.++..+..|+..+......+.|+++|+||+|+.+ ......++++.++..++++++++||++|.|++++
T Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  168 (179)
T 1z0f_A           90 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA-QRDVTYEEAKQFAEENGLLFLEASAKTGENVEDA  168 (179)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             EEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            999999999999999999999988887766899999999999964 3456678888999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027949          170 FFSIARDIKQ  179 (216)
Q Consensus       170 ~~~l~~~i~~  179 (216)
                      |++|.+.+.+
T Consensus       169 ~~~l~~~i~~  178 (179)
T 1z0f_A          169 FLEAAKKIYQ  178 (179)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHHhh
Confidence            9999988754

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=4.8e-33  Score=203.96  Aligned_cols=168  Identities=40%  Similarity=0.715  Sum_probs=150.0

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      ....++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   88 (181)
T 2efe_B            9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   88 (181)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred             CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence            45679999999999999999999999988877778888888888888888889999999999999999999999999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q 027949           92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFF  171 (216)
Q Consensus        92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  171 (216)
                      |+|||++++.++..+..|+..+......+.|+++|+||+|+.+ ......+++..++...+++++++||++|.|++++|+
T Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  167 (181)
T 2efe_B           89 IIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLD-ARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFY  167 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc-cccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence            9999999999999999999999887766899999999999964 345677888899999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 027949          172 SIARDIKQR  180 (216)
Q Consensus       172 ~l~~~i~~~  180 (216)
                      +|.+.+...
T Consensus       168 ~l~~~~~~~  176 (181)
T 2efe_B          168 EIARRLPRV  176 (181)
T ss_dssp             HHHHTCC--
T ss_pred             HHHHHHHhc
Confidence            999877554

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=9.5e-33  Score=202.20  Aligned_cols=169  Identities=53%  Similarity=0.966  Sum_probs=142.7

Q ss_pred             CCCceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027949           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (216)
                      ..+..++|+|+|.+|+|||||+++|++..+. ..+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|
T Consensus         6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d   85 (180)
T 2g6b_A            6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH   85 (180)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred             cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence            4467799999999999999999999998875 466778887887777888998899999999999999999999999999


Q ss_pred             EEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q 027949           90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEV  169 (216)
Q Consensus        90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  169 (216)
                      ++|+|+|++++.++..+..|+..+......+.|+++|+||+|+.+ ......++...++..++++++++||++|.|++++
T Consensus        86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  164 (180)
T 2g6b_A           86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH-ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLA  164 (180)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS-CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence            999999999999999999999988887666899999999999965 3456677888899999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027949          170 FFSIARDIKQR  180 (216)
Q Consensus       170 ~~~l~~~i~~~  180 (216)
                      |++|.+.+.++
T Consensus       165 ~~~l~~~~~~~  175 (180)
T 2g6b_A          165 FTAIAKELKRR  175 (180)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHHHH
Confidence            99999988654

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=3.6e-33  Score=204.56  Aligned_cols=170  Identities=41%  Similarity=0.703  Sum_probs=136.2

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEEC-CeEEEEEEEeCCCccccccccccccccccE
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      ....++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+.++ +..+.+.+||+||++.+...+..+++.+|+
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC   84 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence            3567999999999999999999999998887788888777777777776 556889999999999999999999999999


Q ss_pred             EEEEEeCCCHhHHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCCccChHHHHHHHH-HhCCeEEEEecCCCCC
Q 027949           91 ILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKILVGNKADMDESKRAVPTSKGQALAD-EYGIKFFETSAKTNLN  165 (216)
Q Consensus        91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~g  165 (216)
                      +|+|||++++.++..+..|+..+.....    .+.|+++|+||+|+.+.......+++..++. ..+++++++||++|.|
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g  164 (182)
T 1ky3_A           85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN  164 (182)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence            9999999999999999999988876543    5789999999999965555667788888887 4568999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 027949          166 VEEVFFSIARDIKQRL  181 (216)
Q Consensus       166 i~~l~~~l~~~i~~~~  181 (216)
                      ++++|++|.+.+.+++
T Consensus       165 i~~l~~~l~~~~~~~~  180 (182)
T 1ky3_A          165 VDTAFEEIARSALQQN  180 (182)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999998764

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.2e-33  Score=208.21  Aligned_cols=172  Identities=37%  Similarity=0.692  Sum_probs=149.6

Q ss_pred             ccCCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 027949            7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR   86 (216)
Q Consensus         7 ~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   86 (216)
                      .+.+..+..++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+||+||.+.+...+..+++
T Consensus        15 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   94 (192)
T 2fg5_A           15 VPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYR   94 (192)
T ss_dssp             ------CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHT
T ss_pred             ccccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhc
Confidence            45556678899999999999999999999999887777788887787788888888899999999999999999999999


Q ss_pred             cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCH
Q 027949           87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV  166 (216)
Q Consensus        87 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  166 (216)
                      .+|++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+ .+....+++..++...+++++++||++|.|+
T Consensus        95 ~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi  173 (192)
T 2fg5_A           95 GSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD-IREVPLKDAKEYAESIGAIVVETSAKNAINI  173 (192)
T ss_dssp             TCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHTTTCEEEECBTTTTBSH
T ss_pred             cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCcCH
Confidence            999999999999999999999999999887766899999999999964 3456778889999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027949          167 EEVFFSIARDIKQ  179 (216)
Q Consensus       167 ~~l~~~l~~~i~~  179 (216)
                      +++|++|.+.+.+
T Consensus       174 ~~l~~~l~~~i~~  186 (192)
T 2fg5_A          174 EELFQGISRQIPP  186 (192)
T ss_dssp             HHHHHHHHHTCC-
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999887654

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=1.1e-32  Score=201.92  Aligned_cols=170  Identities=35%  Similarity=0.592  Sum_probs=147.8

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      ....++|+|+|.+|+|||||+++|++..+...+.++.+..+. ..+..++..+.+.+||+||++.+..++..+++.+|++
T Consensus         6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   84 (181)
T 2fn4_A            6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF   84 (181)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence            445699999999999999999999999887777777765554 6677888888999999999999999999999999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q 027949           92 LLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF  170 (216)
Q Consensus        92 i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  170 (216)
                      ++|||++++.++..+..|+..+... ...+.|+++|+||+|+.+ ...+..+++..++...+++++++||++|.|++++|
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  163 (181)
T 2fn4_A           85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES-QRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF  163 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence            9999999999999999998887443 345799999999999864 34566778888888999999999999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 027949          171 FSIARDIKQRLAD  183 (216)
Q Consensus       171 ~~l~~~i~~~~~~  183 (216)
                      ++|.+.+.+....
T Consensus       164 ~~l~~~~~~~~~~  176 (181)
T 2fn4_A          164 EQLVRAVRKYQEQ  176 (181)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhhcc
Confidence            9999999876543

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=2.2e-33  Score=211.93  Aligned_cols=177  Identities=47%  Similarity=0.873  Sum_probs=151.4

Q ss_pred             cCCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCe----------EEEEEEEeCCCcccc
Q 027949            8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK----------RIKLQIWDTAGQERF   77 (216)
Q Consensus         8 ~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~G~~~~   77 (216)
                      ...+.++.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++.          .+.+.|||+||++.+
T Consensus        18 ~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~   97 (217)
T 2f7s_A           18 GSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERF   97 (217)
T ss_dssp             ---CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHH
T ss_pred             cCCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhH
Confidence            3446678899999999999999999999998887777788777777777777665          689999999999999


Q ss_pred             ccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEE
Q 027949           78 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFF  156 (216)
Q Consensus        78 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  156 (216)
                      ...+..+++.+|++|+|||++++.++..+..|+..+..... .+.|++||+||+|+.+ ...+..+++..++..++++++
T Consensus        98 ~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~  176 (217)
T 2f7s_A           98 RSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD-QREVNERQARELADKYGIPYF  176 (217)
T ss_dssp             HHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCCEE
T ss_pred             HhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccc-ccccCHHHHHHHHHHCCCcEE
Confidence            99999999999999999999999999999999887765443 5789999999999964 345667888899999999999


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHhhccc
Q 027949          157 ETSAKTNLNVEEVFFSIARDIKQRLADTD  185 (216)
Q Consensus       157 ~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~  185 (216)
                      ++||++|.|++++|++|.+.+.++.....
T Consensus       177 ~~Sa~~g~gi~~l~~~l~~~i~~~~~~~~  205 (217)
T 2f7s_A          177 ETSAATGQNVEKAVETLLDLIMKRMEQCV  205 (217)
T ss_dssp             EEBTTTTBTHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHhhcCC
Confidence            99999999999999999999988765543

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=1.6e-32  Score=202.42  Aligned_cols=169  Identities=36%  Similarity=0.619  Sum_probs=145.2

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..++|+|+|.+|+|||||+++|.+..+...+.++.+ +.....+..++..+.+.+||+||++.+..++..+++.+|++++
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   81 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   81 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            469999999999999999999999887766666654 4555667788888899999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949           94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS  172 (216)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  172 (216)
                      |||++++.++..+..|+..+.... ..+.|+++|+||+|+.+  .....+.+..++..++++++++||++|.|++++|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  159 (189)
T 4dsu_A           82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS--RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT  159 (189)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS--CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc--cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            999999999999999998887754 35799999999999863  456778889999999999999999999999999999


Q ss_pred             HHHHHHHHhhccc
Q 027949          173 IARDIKQRLADTD  185 (216)
Q Consensus       173 l~~~i~~~~~~~~  185 (216)
                      |.+.+.+......
T Consensus       160 l~~~~~~~~~~~~  172 (189)
T 4dsu_A          160 LVREIRKHKEKMS  172 (189)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhcc
Confidence            9999988765543

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=1.4e-32  Score=202.69  Aligned_cols=168  Identities=23%  Similarity=0.373  Sum_probs=142.5

Q ss_pred             cCCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q 027949            8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG   87 (216)
Q Consensus         8 ~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   87 (216)
                      ........+||+|+|.+|||||||++++++..+...+.++.+  .....+.+++..+.+.+|||+|++.+.     +++.
T Consensus        13 ~~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~   85 (184)
T 3ihw_A           13 NLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAW   85 (184)
T ss_dssp             ---CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE--EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHH
T ss_pred             CCCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc--eEEEEEEECCEEEEEEEEECCCChhhh-----eecC
Confidence            334556779999999999999999999999988776766633  344778889999999999999998766     7788


Q ss_pred             ccEEEEEEeCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCC-CCCCccChHHHHHHHHHhC-CeEEEEecCCCC
Q 027949           88 AMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMD-ESKRAVPTSKGQALADEYG-IKFFETSAKTNL  164 (216)
Q Consensus        88 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~  164 (216)
                      +|++++|||++++.++..+..|+..+..... .+.|+++|+||+|+. .....+..+++..++..++ +.|+++||++|.
T Consensus        86 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  165 (184)
T 3ihw_A           86 VDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGL  165 (184)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTB
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCC
Confidence            9999999999999999999999999877643 478999999999985 2345677888999999997 899999999999


Q ss_pred             CHHHHHHHHHHHHHHHhh
Q 027949          165 NVEEVFFSIARDIKQRLA  182 (216)
Q Consensus       165 gi~~l~~~l~~~i~~~~~  182 (216)
                      |++++|++|++.+.++++
T Consensus       166 gv~~lf~~l~~~i~~~~~  183 (184)
T 3ihw_A          166 NVERVFQDVAQKVVALRK  183 (184)
T ss_dssp             THHHHHHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHHHHHHhc
Confidence            999999999999987654

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=7.7e-33  Score=200.55  Aligned_cols=163  Identities=44%  Similarity=0.752  Sum_probs=147.2

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v   82 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEE
Confidence            58999999999999999999999988877888888888888888898889999999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC--CccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949           95 YDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK--RAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS  172 (216)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  172 (216)
                      +|++++.++..+..|+..+......+.|+++|+||+|+.+..  ..+..+....++...+++++++||++|.|++++|++
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  162 (170)
T 1ek0_A           83 YDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLG  162 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            999999999999999999888776689999999999986432  456677888899999999999999999999999999


Q ss_pred             HHHHH
Q 027949          173 IARDI  177 (216)
Q Consensus       173 l~~~i  177 (216)
                      |.+.+
T Consensus       163 l~~~i  167 (170)
T 1ek0_A          163 IGEKI  167 (170)
T ss_dssp             HHTTS
T ss_pred             HHHHH
Confidence            98764

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.7e-33  Score=209.53  Aligned_cols=165  Identities=34%  Similarity=0.511  Sum_probs=139.9

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ...++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|++|
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   84 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI   84 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence            3459999999999999999999999888766666655333 345667888889999999999999888999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q 027949           93 LVYDVTDESSFNNIRNWIRNIEQHAS--DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF  170 (216)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  170 (216)
                      +|||++++.++..+..|+..+.....  .+.|+++|+||+|+.+  .....+++..++..++++++++||++|.|++++|
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  162 (199)
T 2gf0_A           85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ--REVDTREAQAVAQEWKCAFMETSAKMNYNVKELF  162 (199)
T ss_dssp             EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS--CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc--cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Confidence            99999999999998888877766542  3689999999999864  4456778888888999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027949          171 FSIARDIKQR  180 (216)
Q Consensus       171 ~~l~~~i~~~  180 (216)
                      ++|.+.+.++
T Consensus       163 ~~l~~~~~~~  172 (199)
T 2gf0_A          163 QELLTLETRR  172 (199)
T ss_dssp             HHHHHHCSSS
T ss_pred             HHHHHHHhhh
Confidence            9999876543

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=8.9e-33  Score=200.22  Aligned_cols=164  Identities=46%  Similarity=0.789  Sum_probs=147.2

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ...++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence            35699999999999999999999998888777788887787888888888899999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS  172 (216)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  172 (216)
                      +|||++++.++..+..|+..+......+.|+++|+||+|+.+ ......+++..++...+++++++||++|.|++++|++
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  162 (170)
T 1r2q_A           84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN-KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA  162 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            999999999999999999988887666899999999999864 3456677888899999999999999999999999999


Q ss_pred             HHHHH
Q 027949          173 IARDI  177 (216)
Q Consensus       173 l~~~i  177 (216)
                      |.+.+
T Consensus       163 i~~~~  167 (170)
T 1r2q_A          163 IAKKL  167 (170)
T ss_dssp             HHHTS
T ss_pred             HHHHH
Confidence            98765

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=7.2e-33  Score=200.46  Aligned_cols=165  Identities=38%  Similarity=0.701  Sum_probs=148.0

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      +..++|+|+|.+|+|||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            45699999999999999999999999888788888888888888888988899999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS  172 (216)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  172 (216)
                      +|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+ ......+++..++...+++++++||++|.|++++|++
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  160 (168)
T 1z2a_A           83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLD-DSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKY  160 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGG-GCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCc-ccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Confidence            9999999999999999998887765 4789999999999864 3446677888899999999999999999999999999


Q ss_pred             HHHHHHH
Q 027949          173 IARDIKQ  179 (216)
Q Consensus       173 l~~~i~~  179 (216)
                      |.+.+.+
T Consensus       161 l~~~~~~  167 (168)
T 1z2a_A          161 LAEKHLQ  167 (168)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9988764

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=1.9e-32  Score=202.72  Aligned_cols=173  Identities=49%  Similarity=0.893  Sum_probs=151.3

Q ss_pred             CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEE-EEEEEECCe---------EEEEEEEeCCCccccccc
Q 027949           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFK-IRTIELDGK---------RIKLQIWDTAGQERFRTI   80 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~G~~~~~~~   80 (216)
                      +.++.++|+|+|.+|+|||||+++|++..+...+.++.+.++. ...+..++.         .+.+.+||+||.+.+...
T Consensus         7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   86 (195)
T 3bc1_A            7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL   86 (195)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred             ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence            4567799999999999999999999998887777787777766 566666655         689999999999999999


Q ss_pred             cccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEe
Q 027949           81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETS  159 (216)
Q Consensus        81 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (216)
                      +..+++.+|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ ......+++..++..++++++++|
T Consensus        87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~S  165 (195)
T 3bc1_A           87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLED-QRAVKEEEARELAEKYGIPYFETS  165 (195)
T ss_dssp             HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCCEEECC
T ss_pred             HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ccccCHHHHHHHHHHcCCCEEEEE
Confidence            99999999999999999999999999999988877654 5799999999999864 345667888899999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHhhcc
Q 027949          160 AKTNLNVEEVFFSIARDIKQRLADT  184 (216)
Q Consensus       160 a~~~~gi~~l~~~l~~~i~~~~~~~  184 (216)
                      |++|.|++++|++|.+.+.++....
T Consensus       166 a~~~~~v~~l~~~l~~~~~~~~~~~  190 (195)
T 3bc1_A          166 AANGTNISHAIEMLLDLIMKRMERS  190 (195)
T ss_dssp             TTTCTTHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            9999999999999999998876554

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=2.1e-32  Score=198.35  Aligned_cols=164  Identities=39%  Similarity=0.728  Sum_probs=148.3

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ...++|+|+|.+|+|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||+||.+.+...+..+++.+|++|
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i   83 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   83 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence            45699999999999999999999999988777888888888888888988899999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS  172 (216)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  172 (216)
                      +|||++++.++..+..|+..+........|+++|+||+|+.+ ......++...++...+++++++||++|.|++++|++
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  162 (170)
T 1z0j_A           84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD-VREVMERDAKDYADSIHAIFVETSAKNAININELFIE  162 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence            999999999999999999999887667899999999999965 3456677888899999999999999999999999999


Q ss_pred             HHHHH
Q 027949          173 IARDI  177 (216)
Q Consensus       173 l~~~i  177 (216)
                      |.+.+
T Consensus       163 i~~~i  167 (170)
T 1z0j_A          163 ISRRI  167 (170)
T ss_dssp             HHHHC
T ss_pred             HHHHH
Confidence            98865

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=2.2e-33  Score=209.37  Aligned_cols=170  Identities=46%  Similarity=0.785  Sum_probs=138.4

Q ss_pred             CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027949           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (216)
                      ...+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||.+.+...+..+++.+|
T Consensus        23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  102 (199)
T 2p5s_A           23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKAD  102 (199)
T ss_dssp             -----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCS
T ss_pred             cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCC
Confidence            34566799999999999999999999999887777777777777788888998899999999999999988999999999


Q ss_pred             EEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-----CCCccChHHHHHHHHHhCCeEEEEecCCCC
Q 027949           90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE-----SKRAVPTSKGQALADEYGIKFFETSAKTNL  164 (216)
Q Consensus        90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (216)
                      ++|+|||++++.++..+..|+..+......+.|++||+||+|+.+     ....+..+++..++...+++++++||++|.
T Consensus       103 ~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~  182 (199)
T 2p5s_A          103 GVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGS  182 (199)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCT
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCC
Confidence            999999999999999999999988877666799999999999852     235566788889999999999999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 027949          165 NVEEVFFSIARDIKQ  179 (216)
Q Consensus       165 gi~~l~~~l~~~i~~  179 (216)
                      |++++|.+|.+.+.+
T Consensus       183 gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          183 NIVEAVLHLAREVKK  197 (199)
T ss_dssp             THHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999988753

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=1.6e-32  Score=201.32  Aligned_cols=168  Identities=32%  Similarity=0.492  Sum_probs=147.1

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ...++|+|+|.+|+|||||+++|++..+...+.++.+... ...+..++..+.+.+||+||++.+..++..+++.+|+++
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   82 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   82 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence            3569999999999999999999998888877777777665 677788998899999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q 027949           93 LVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFF  171 (216)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  171 (216)
                      +|||+++++++..+..|+..+..... .+.|+++|+||+|+.+ ...+..+++..++..++++++++||++|.|++++|.
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  161 (181)
T 3t5g_A           83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM-ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR  161 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh-cceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Confidence            99999999999999999988866543 4789999999999964 466778889999999999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 027949          172 SIARDIKQRLA  182 (216)
Q Consensus       172 ~l~~~i~~~~~  182 (216)
                      +|++.+.....
T Consensus       162 ~l~~~~~~~~~  172 (181)
T 3t5g_A          162 RIILEAEKMDG  172 (181)
T ss_dssp             HHHHHHHTC--
T ss_pred             HHHHHHHHhcC
Confidence            99999877643

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=3.1e-32  Score=200.19  Aligned_cols=167  Identities=36%  Similarity=0.590  Sum_probs=148.5

Q ss_pred             CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027949           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      .....++|+|+|.+|+|||||+++|++..+...+.++.+... ...+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~   92 (183)
T 3kkq_A           14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG   92 (183)
T ss_dssp             CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            445679999999999999999999999988877777777555 6777888988999999999999999999999999999


Q ss_pred             EEEEEeCCCHhHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecC-CCCCHHH
Q 027949           91 ILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK-TNLNVEE  168 (216)
Q Consensus        91 ~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~gi~~  168 (216)
                      +|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+ .+....+++..++..++++++++||+ +|.|+++
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~  171 (183)
T 3kkq_A           93 FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH-LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDK  171 (183)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCST-TCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchh-ccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHH
Confidence            99999999999999999998888664 335789999999999965 45677888999999999999999999 9999999


Q ss_pred             HHHHHHHHHHH
Q 027949          169 VFFSIARDIKQ  179 (216)
Q Consensus       169 l~~~l~~~i~~  179 (216)
                      +|++|.+.+.+
T Consensus       172 l~~~l~~~i~~  182 (183)
T 3kkq_A          172 TFHDLVRVIRQ  182 (183)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999998865

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=2.5e-32  Score=199.46  Aligned_cols=167  Identities=40%  Similarity=0.687  Sum_probs=144.9

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      ....++|+|+|.+|+|||||++++++..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   83 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   83 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence            35669999999999999999999999988878888888888888888999889999999999999999999999999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCCccChHHHHHHHH-HhCCeEEEEecCCCCCH
Q 027949           92 LLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKILVGNKADMDESKRAVPTSKGQALAD-EYGIKFFETSAKTNLNV  166 (216)
Q Consensus        92 i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi  166 (216)
                      ++|||++++.++..+..|+..+.....    .+.|+++|+||+|+.  ......+++..++. ..+++++++||++|.|+
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  161 (177)
T 1wms_A           84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS--ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV  161 (177)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS--SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc--ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence            999999999999999999988876543    578999999999986  34566778888887 55689999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027949          167 EEVFFSIARDIKQR  180 (216)
Q Consensus       167 ~~l~~~l~~~i~~~  180 (216)
                      +++|++|.+.+.++
T Consensus       162 ~~l~~~l~~~~~~~  175 (177)
T 1wms_A          162 AAAFEEAVRRVLAT  175 (177)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999988753

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=3.4e-32  Score=204.56  Aligned_cols=172  Identities=60%  Similarity=1.084  Sum_probs=152.3

Q ss_pred             CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027949           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      .....++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus        16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   95 (213)
T 3cph_A           16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG   95 (213)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence            34567999999999999999999999998887788888888888888899988999999999999999999999999999


Q ss_pred             EEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q 027949           91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF  170 (216)
Q Consensus        91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  170 (216)
                      +|+|||++++.++..+..|+..+......+.|+++|+||+|+.  ......++...++..++++++++||++|.|++++|
T Consensus        96 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  173 (213)
T 3cph_A           96 IILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIF  173 (213)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS--SCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc--ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            9999999999999999999998888766679999999999993  35566778888999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcc
Q 027949          171 FSIARDIKQRLADT  184 (216)
Q Consensus       171 ~~l~~~i~~~~~~~  184 (216)
                      .+|.+.+.++....
T Consensus       174 ~~l~~~~~~~~~~~  187 (213)
T 3cph_A          174 FTLAKLIQEKIDSN  187 (213)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999998876543

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=6.5e-33  Score=208.61  Aligned_cols=168  Identities=32%  Similarity=0.624  Sum_probs=141.5

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ...++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++++|++|
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   85 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   85 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence            4569999999999999999999999888777777766444 455677888899999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-------ccChHHHHHHHHHhCC-eEEEEecCCC
Q 027949           93 LVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESKR-------AVPTSKGQALADEYGI-KFFETSAKTN  163 (216)
Q Consensus        93 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-------~~~~~~~~~~~~~~~~-~~~~~Sa~~~  163 (216)
                      +|||+++++++..+. .|+..+....+ +.|++||+||+|+.+...       .+..+++..++..+++ +++++||++|
T Consensus        86 lv~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g  164 (212)
T 2j0v_A           86 LAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQ  164 (212)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCC
Confidence            999999999999987 69888877654 799999999999864321       2367788889999996 9999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhh
Q 027949          164 LNVEEVFFSIARDIKQRLA  182 (216)
Q Consensus       164 ~gi~~l~~~l~~~i~~~~~  182 (216)
                      .|++++|++|++.+.+...
T Consensus       165 ~gi~~l~~~l~~~~~~~~~  183 (212)
T 2j0v_A          165 QNVKAVFDTAIKVVLQPPR  183 (212)
T ss_dssp             TTHHHHHHHHHHHHHCC--
T ss_pred             CCHHHHHHHHHHHHhhhhh
Confidence            9999999999999876543

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=1.2e-32  Score=201.20  Aligned_cols=166  Identities=39%  Similarity=0.710  Sum_probs=149.0

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ...++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+||+||.+.+...+..+++.+|++|
T Consensus        12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   91 (179)
T 2y8e_A           12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV   91 (179)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            45699999999999999999999999888888888888888888889998899999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS  172 (216)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  172 (216)
                      +|+|++++.++..+..|+..+......+.|+++|+||+|+.+ ......++...++...+++++++||++|.|++++|++
T Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  170 (179)
T 2y8e_A           92 VVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD-KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRR  170 (179)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGG-GCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc-cCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            999999999999999999888877666899999999999865 3456677888888899999999999999999999999


Q ss_pred             HHHHHHH
Q 027949          173 IARDIKQ  179 (216)
Q Consensus       173 l~~~i~~  179 (216)
                      |.+.+.+
T Consensus       171 l~~~~~~  177 (179)
T 2y8e_A          171 VAAALPG  177 (179)
T ss_dssp             HHHTCC-
T ss_pred             HHHHHhh
Confidence            9887643

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=1.4e-32  Score=203.21  Aligned_cols=169  Identities=43%  Similarity=0.818  Sum_probs=144.9

Q ss_pred             CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccc-cccccccccc
Q 027949           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-TITTAYYRGA   88 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~   88 (216)
                      ......++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||.+.+. .++..+++.+
T Consensus        15 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~   94 (189)
T 1z06_A           15 GSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNV   94 (189)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTC
T ss_pred             CCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCC
Confidence            344567999999999999999999999998887788888888888888899988999999999999888 7888899999


Q ss_pred             cEEEEEEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCC---C
Q 027949           89 MGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN---L  164 (216)
Q Consensus        89 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~  164 (216)
                      |++|+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+ ...+..+++..++...+++++++||++|   .
T Consensus        95 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~  173 (189)
T 1z06_A           95 HAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS-AIQVPTDLAQKFADTHSMPLFETSAKNPNDND  173 (189)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCCEEECCSSSGGGGS
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cceeCHHHHHHHHHHcCCEEEEEeCCcCCccc
Confidence            99999999999999999999998887765 45799999999999964 3456678888999999999999999999   9


Q ss_pred             CHHHHHHHHHHHHHH
Q 027949          165 NVEEVFFSIARDIKQ  179 (216)
Q Consensus       165 gi~~l~~~l~~~i~~  179 (216)
                      |++++|.+|.+.+.+
T Consensus       174 ~i~~l~~~l~~~i~~  188 (189)
T 1z06_A          174 HVEAIFMTLAHKLKS  188 (189)
T ss_dssp             CHHHHHHHHC-----
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999999887753

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=1.1e-32  Score=207.82  Aligned_cols=172  Identities=20%  Similarity=0.446  Sum_probs=144.3

Q ss_pred             CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027949           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (216)
                      ......+||+|+|.+|||||||+++|++..+...+.++.+..+ ...+..++..+.+.|||++|++.+..++..+++.+|
T Consensus        22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  100 (214)
T 3q3j_B           22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD  100 (214)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence            3455679999999999999999999999998887788777555 455667777899999999999999999999999999


Q ss_pred             EEEEEEeCCCHhHHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhCC-eEE
Q 027949           90 GILLVYDVTDESSFNN-IRNWIRNIEQHASDNVNKILVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFF  156 (216)
Q Consensus        90 ~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~  156 (216)
                      ++|+|||++++.++.. +..|+..+.... .+.|++||+||+|+.++           .+.+..+++..++..+++ +|+
T Consensus       101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  179 (214)
T 3q3j_B          101 AVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYL  179 (214)
T ss_dssp             EEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEE
Confidence            9999999999999998 688998888775 47999999999999643           256788899999999998 999


Q ss_pred             EEecCCCCC-HHHHHHHHHHHHHHHhhc
Q 027949          157 ETSAKTNLN-VEEVFFSIARDIKQRLAD  183 (216)
Q Consensus       157 ~~Sa~~~~g-i~~l~~~l~~~i~~~~~~  183 (216)
                      ++||++|.| ++++|++|++.+.+....
T Consensus       180 e~SA~~g~g~v~~lf~~l~~~~~~~~~~  207 (214)
T 3q3j_B          180 EGSAFTSEKSIHSIFRTASMLCLNKPSP  207 (214)
T ss_dssp             ECCTTTCHHHHHHHHHHHHHHHHC----
T ss_pred             EeccCCCcccHHHHHHHHHHHHhccCcC
Confidence            999999998 999999999998866443

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.4e-32  Score=201.69  Aligned_cols=172  Identities=46%  Similarity=0.794  Sum_probs=152.4

Q ss_pred             CCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027949            9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   88 (216)
Q Consensus         9 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   88 (216)
                      ..+....++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+
T Consensus         9 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   88 (195)
T 1x3s_A            9 DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGA   88 (195)
T ss_dssp             CTTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTC
T ss_pred             ccCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccC
Confidence            34445679999999999999999999999998888888888888888888999889999999999999999999999999


Q ss_pred             cEEEEEEeCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHH
Q 027949           89 MGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE  167 (216)
Q Consensus        89 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  167 (216)
                      |++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+  .....+++..++...+++++++||++|.|++
T Consensus        89 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  166 (195)
T 1x3s_A           89 QGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN--REVDRNEGLKFARKHSMLFIEASAKTCDGVQ  166 (195)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS--CCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc--cccCHHHHHHHHHHcCCEEEEecCCCCCCHH
Confidence            999999999999999999999988876542 4689999999999943  4566778888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 027949          168 EVFFSIARDIKQRLA  182 (216)
Q Consensus       168 ~l~~~l~~~i~~~~~  182 (216)
                      ++|++|.+.+.+...
T Consensus       167 ~l~~~l~~~~~~~~~  181 (195)
T 1x3s_A          167 CAFEELVEKIIQTPG  181 (195)
T ss_dssp             HHHHHHHHHHHTSGG
T ss_pred             HHHHHHHHHHHhhhh
Confidence            999999999986543

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=2.5e-32  Score=198.00  Aligned_cols=165  Identities=29%  Similarity=0.400  Sum_probs=132.5

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc-ccccccccccEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-ITTAYYRGAMGILL   93 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i~   93 (216)
                      .+||+|+|.+|+|||||+++|.+........++.+.+.....+.+++..+.+.+||++|.+.+.. ++..+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            58999999999999999999998777666666666777888888999999999999999988876 67777889999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949           94 VYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS  172 (216)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  172 (216)
                      |||+++++++..+..|+..+..... .+.|+++|+||+|+.+ ......+++..++...+++++++||++|.|++++|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  160 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR-SREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEG  160 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhh-cccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHH
Confidence            9999999999999999988877654 4799999999999964 4567788899999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027949          173 IARDIKQR  180 (216)
Q Consensus       173 l~~~i~~~  180 (216)
                      |.+.+..+
T Consensus       161 l~~~i~~~  168 (169)
T 3q85_A          161 AVRQIRLR  168 (169)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            99988764

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=8.3e-33  Score=202.16  Aligned_cols=167  Identities=34%  Similarity=0.543  Sum_probs=144.6

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECC-eEEEEEEEeCCCccccccccccccccccEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG-KRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      ...++|+|+|.+|+|||||+++|.+..+...+.++.+.+.....+.+++ ..+.+.+||+||++.+...+..+++.+|++
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   83 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV   83 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence            4569999999999999999999999888777777877778888888876 678999999999999999999999999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHHhcC--CCCc-EEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHH
Q 027949           92 LLVYDVTDESSFNNIRNWIRNIEQHAS--DNVN-KILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE  168 (216)
Q Consensus        92 i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (216)
                      |+|||++++.++..+..|+..+.....  ...| +++|+||+|+.+ ......+++..++..++++++++||++|.|+++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  162 (178)
T 2hxs_A           84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH-MRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL  162 (178)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG-GCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc-ccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence            999999999999999899888876432  1345 789999999864 345667788899999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027949          169 VFFSIARDIKQR  180 (216)
Q Consensus       169 l~~~l~~~i~~~  180 (216)
                      +|++|.+.+.+.
T Consensus       163 l~~~l~~~~~~~  174 (178)
T 2hxs_A          163 CFQKVAAEILGI  174 (178)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhh
Confidence            999999988654

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=5.5e-32  Score=201.85  Aligned_cols=172  Identities=30%  Similarity=0.484  Sum_probs=138.8

Q ss_pred             CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027949           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (216)
                      ......++|+|+|.+|+|||||+++|++..+...+.++.+. .....+..++..+.+.+||+||.+.+..++..+++++|
T Consensus        15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   93 (201)
T 2q3h_A           15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFD-NFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTD   93 (201)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSE-EEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccc-eeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence            34566799999999999999999999998877666676653 33456778888889999999999999999999999999


Q ss_pred             EEEEEEeCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhCC-eEE
Q 027949           90 GILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFF  156 (216)
Q Consensus        90 ~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~  156 (216)
                      ++|+|||++++.++..+. .|+..+..... +.|+++|+||+|+.+.           ...+..+++..++..++. +++
T Consensus        94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  172 (201)
T 2q3h_A           94 IFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYI  172 (201)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEE
Confidence            999999999999999987 68888877654 7999999999998653           245667888899998887 999


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHhhc
Q 027949          157 ETSAKTNLNVEEVFFSIARDIKQRLAD  183 (216)
Q Consensus       157 ~~Sa~~~~gi~~l~~~l~~~i~~~~~~  183 (216)
                      ++||++|.|++++|++|++.+.+....
T Consensus       173 ~~Sa~~g~gi~~l~~~l~~~~~~~~~~  199 (201)
T 2q3h_A          173 ECSALTQKNLKEVFDAAIVAGIQYSDT  199 (201)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred             EEecCCCCCHHHHHHHHHHHHhccccc
Confidence            999999999999999999999876543

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=5.6e-32  Score=197.13  Aligned_cols=168  Identities=32%  Similarity=0.473  Sum_probs=133.4

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccc--cccccccccccccEE
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--FRTITTAYYRGAMGI   91 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~~~~~~~~d~~   91 (216)
                      +.++|+|+|.+|+|||||+++|.+..+...+ ++.+.+.....+.+++..+.+.+||+||.+.  +..+...+++.+|++
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~   81 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY   81 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence            4699999999999999999999988765433 3455566677788899889999999999887  556667788999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q 027949           92 LLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF  170 (216)
Q Consensus        92 i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  170 (216)
                      ++|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+ .+.+..++...++..++++++++||++|.|++++|
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  160 (175)
T 2nzj_A           82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR-CREVSVEEGRACAVVFDCKFIETSATLQHNVAELF  160 (175)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTT-TCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcc-ccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence            99999999999999999988887653 34789999999999965 34566778888888999999999999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 027949          171 FSIARDIKQRLAD  183 (216)
Q Consensus       171 ~~l~~~i~~~~~~  183 (216)
                      ++|.+.+.++...
T Consensus       161 ~~l~~~~~~~~~~  173 (175)
T 2nzj_A          161 EGVVRQLRLRRRD  173 (175)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHhhcc
Confidence            9999998776543

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=5.2e-32  Score=200.97  Aligned_cols=169  Identities=30%  Similarity=0.578  Sum_probs=146.0

Q ss_pred             CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027949           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (216)
                      ......++|+|+|.+|+|||||+++|++..+...+.++.+..+. ..+..++..+.+.+||+||++.+...+..+++++|
T Consensus        18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   96 (194)
T 3reg_A           18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSD   96 (194)
T ss_dssp             ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             cccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCc
Confidence            34567799999999999999999999999987777777765554 46778888899999999999999999999999999


Q ss_pred             EEEEEEeCCCHhHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-CCccChHHHHHHHHHhCCe-EEEEecCCCCCH
Q 027949           90 GILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMDES-KRAVPTSKGQALADEYGIK-FFETSAKTNLNV  166 (216)
Q Consensus        90 ~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi  166 (216)
                      ++|+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+. ......+++..++..+++. ++++||++|.|+
T Consensus        97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  175 (194)
T 3reg_A           97 VVLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGL  175 (194)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCH
Confidence            99999999999999997 56888777654 46899999999998643 3567788899999999987 999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027949          167 EEVFFSIARDIKQR  180 (216)
Q Consensus       167 ~~l~~~l~~~i~~~  180 (216)
                      +++|++|++.+.++
T Consensus       176 ~~l~~~l~~~i~~~  189 (194)
T 3reg_A          176 NEVFEKSVDCIFSN  189 (194)
T ss_dssp             HHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999988754

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=2.2e-32  Score=202.02  Aligned_cols=167  Identities=28%  Similarity=0.471  Sum_probs=139.5

Q ss_pred             CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027949           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (216)
                      ......+||+|+|.+|||||||+++|++..+...+.++.+..+ ...+..++..+.+.+||++|++.+..+ ..+++.+|
T Consensus        16 ~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~   93 (187)
T 3c5c_A           16 FQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAH   93 (187)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCS
T ss_pred             hCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCC
Confidence            3456679999999999999999999999988877777776554 455677888899999999999988774 67889999


Q ss_pred             EEEEEEeCCCHhHHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEec-CCCCC
Q 027949           90 GILLVYDVTDESSFNNIRNWIRNIEQHA---SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSA-KTNLN  165 (216)
Q Consensus        90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~g  165 (216)
                      ++|+|||+++++++..+..|+..+....   ..+.|+++|+||+|+.+ .+.+..+++..++..++++++++|| ++|.|
T Consensus        94 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~g  172 (187)
T 3c5c_A           94 AFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ-YRQVTKAEGVALAGRFGCLFFEVSACLDFEH  172 (187)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG-GCSSCHHHHHHHHHHHTCEEEECCSSSCSHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh-cCccCHHHHHHHHHHcCCcEEEEeecCcccc
Confidence            9999999999999999999998887653   24799999999999964 3556778899999999999999999 89999


Q ss_pred             HHHHHHHHHHHHHH
Q 027949          166 VEEVFFSIARDIKQ  179 (216)
Q Consensus       166 i~~l~~~l~~~i~~  179 (216)
                      ++++|++|++.+.+
T Consensus       173 v~~lf~~l~~~i~~  186 (187)
T 3c5c_A          173 VQHVFHEAVREARR  186 (187)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999988753

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=1.8e-32  Score=203.90  Aligned_cols=169  Identities=29%  Similarity=0.393  Sum_probs=141.9

Q ss_pred             CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc-cccccccccc
Q 027949           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-ITTAYYRGAM   89 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d   89 (216)
                      .....++|+|+|.+|||||||+++|.+........++.+.+.....+.+++..+.+.+||++|.+.+.. ++..+++.+|
T Consensus        19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d   98 (195)
T 3cbq_A           19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD   98 (195)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence            445679999999999999999999986554434445556666777788899889999999999987664 6777889999


Q ss_pred             EEEEEEeCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHH
Q 027949           90 GILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE  168 (216)
Q Consensus        90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (216)
                      ++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ .+.+..+++..++..++++++++||++|.|+++
T Consensus        99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~  177 (195)
T 3cbq_A           99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR-SREVSLEEGRHLAGTLSCKHIETSAALHHNTRE  177 (195)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccc-cCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHH
Confidence            99999999999999999999988877553 4799999999999965 345677888889999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027949          169 VFFSIARDIKQR  180 (216)
Q Consensus       169 l~~~l~~~i~~~  180 (216)
                      +|++|++.+.+.
T Consensus       178 lf~~l~~~i~~~  189 (195)
T 3cbq_A          178 LFEGAVRQIRLR  189 (195)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHh
Confidence            999999988653

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=1.3e-31  Score=199.73  Aligned_cols=165  Identities=35%  Similarity=0.629  Sum_probs=145.7

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeE-----------------------------
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR-----------------------------   63 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------   63 (216)
                      +..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..                             
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN   84 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence            456999999999999999999999998887788888877877777777655                             


Q ss_pred             --------EEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027949           64 --------IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES  135 (216)
Q Consensus        64 --------~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  135 (216)
                              +.+.+||+||++.+...+..+++.+|++|+|+|++++.++..+..|+..+....  +.|+++|+||+|+  .
T Consensus        85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK~D~--~  160 (208)
T 3clv_A           85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKIDK--N  160 (208)
T ss_dssp             CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEECTTC--C
T ss_pred             cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEECCCc--c
Confidence                    889999999999999999999999999999999999999999999998887765  3899999999993  3


Q ss_pred             CCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 027949          136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL  181 (216)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  181 (216)
                      ......+++..++...+++++++||++|.|++++|++|.+.+.++.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  206 (208)
T 3clv_A          161 KFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI  206 (208)
T ss_dssp             -CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence            4566778899999999999999999999999999999999988754

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.1e-32  Score=204.29  Aligned_cols=171  Identities=28%  Similarity=0.501  Sum_probs=141.7

Q ss_pred             CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027949           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (216)
                      ......++|+|+|.+|+|||||+++|++..+...+.++.+... ...+..++..+.+.+||+||.+.+...+..+++.+|
T Consensus        19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   97 (201)
T 3oes_A           19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVH   97 (201)
T ss_dssp             ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCC
T ss_pred             CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCC
Confidence            3445679999999999999999999999998877777776555 555666666789999999999999999999999999


Q ss_pred             EEEEEEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHH
Q 027949           90 GILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE  168 (216)
Q Consensus        90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (216)
                      ++|+|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+ ...+...++..++...+++++++||++|.|+++
T Consensus        98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  176 (201)
T 3oes_A           98 GYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSP-EREVQAVEGKKLAESWGATFMESSARENQLTQG  176 (201)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCcc-ccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Confidence            9999999999999999999998887653 24689999999999865 456777888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 027949          169 VFFSIARDIKQRLA  182 (216)
Q Consensus       169 l~~~l~~~i~~~~~  182 (216)
                      +|.+|.+.+.+...
T Consensus       177 l~~~l~~~i~~~~~  190 (201)
T 3oes_A          177 IFTKVIQEIARVEN  190 (201)
T ss_dssp             HHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHhhhh
Confidence            99999999987643

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=3.3e-32  Score=204.02  Aligned_cols=171  Identities=23%  Similarity=0.527  Sum_probs=142.6

Q ss_pred             ccCCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 027949            7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR   86 (216)
Q Consensus         7 ~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   86 (216)
                      .|....+..+||+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++
T Consensus        20 ~m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~   98 (205)
T 1gwn_A           20 HMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYP   98 (205)
T ss_dssp             -------CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCT
T ss_pred             CCCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhcc
Confidence            4555567789999999999999999999999988877777776554 445677887899999999999999999999999


Q ss_pred             cccEEEEEEeCCCHhHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhC-C
Q 027949           87 GAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMDES-----------KRAVPTSKGQALADEYG-I  153 (216)
Q Consensus        87 ~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~  153 (216)
                      .+|++|+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+.           .+.+..+++..++..++ +
T Consensus        99 ~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  177 (205)
T 1gwn_A           99 DSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAA  177 (205)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCS
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCC
Confidence            99999999999999999998 67888887765 37899999999999642           24567788889999888 6


Q ss_pred             eEEEEecC-CCCCHHHHHHHHHHHHHH
Q 027949          154 KFFETSAK-TNLNVEEVFFSIARDIKQ  179 (216)
Q Consensus       154 ~~~~~Sa~-~~~gi~~l~~~l~~~i~~  179 (216)
                      +|+++||+ ++.|++++|++|++.++.
T Consensus       178 ~~~e~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          178 TYIECSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             EEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence            99999999 689999999999998875

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=100.00  E-value=3.3e-31  Score=195.83  Aligned_cols=170  Identities=35%  Similarity=0.568  Sum_probs=134.4

Q ss_pred             CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027949           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (216)
                      .+....++|+|+|.+|||||||+++|++..+...+.++.+. .....+..++..+.+.+||+||.+.+...+..+++.+|
T Consensus        16 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   94 (190)
T 3con_A           16 FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGE   94 (190)
T ss_dssp             ---CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCC-----------CTTCS
T ss_pred             ccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccce-EEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCC
Confidence            34456699999999999999999999998877666665543 33456778888889999999999999999999999999


Q ss_pred             EEEEEEeCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHH
Q 027949           90 GILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE  168 (216)
Q Consensus        90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (216)
                      ++++|||++++.++..+..|+..+..... .+.|+++|+||+|+.+  .....+++..++..++++++++||++|.|+++
T Consensus        95 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  172 (190)
T 3con_A           95 GFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT--RTVDTKQAHELAKSYGIPFIETSAKTRQGVED  172 (190)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC--CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc--ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence            99999999999999999999888876543 4689999999999865  45667888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 027949          169 VFFSIARDIKQRLA  182 (216)
Q Consensus       169 l~~~l~~~i~~~~~  182 (216)
                      +|++|.+.+.+.+.
T Consensus       173 l~~~l~~~~~~~~~  186 (190)
T 3con_A          173 AFYTLVREIRQYRM  186 (190)
T ss_dssp             HHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999887543

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=1.4e-31  Score=196.91  Aligned_cols=169  Identities=35%  Similarity=0.623  Sum_probs=145.7

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      ....++|+|+|.+|+|||||+++|++..+...+.++.+... ...+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (187)
T 2a9k_A           15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF   93 (187)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence            34569999999999999999999999888766666665443 45567788888999999999999999999999999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q 027949           92 LLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF  170 (216)
Q Consensus        92 i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  170 (216)
                      |+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ ......+++..++..++++++++||++|.|++++|
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  172 (187)
T 2a9k_A           94 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED-KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF  172 (187)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHH
Confidence            999999999999999999988877654 4799999999999865 34466788888999999999999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 027949          171 FSIARDIKQRLA  182 (216)
Q Consensus       171 ~~l~~~i~~~~~  182 (216)
                      ++|.+.+.++..
T Consensus       173 ~~l~~~i~~~~~  184 (187)
T 2a9k_A          173 FDLMREIRARKM  184 (187)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhc
Confidence            999999987654

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=1.1e-32  Score=206.29  Aligned_cols=171  Identities=25%  Similarity=0.485  Sum_probs=113.6

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcC--CCCCccccceeeeEEEEEEEECCe--EEEEEEEeCCCccccccccccccccc
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDG--SFTTSFITTIGIDFKIRTIELDGK--RIKLQIWDTAGQERFRTITTAYYRGA   88 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~   88 (216)
                      ...++|+|+|.+|+|||||+++|++.  .+...+.++.+.+.....+.+++.  .+.+.+||+||.+.+...+..+++.+
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            46799999999999999999999998  666677777776777778888876  78999999999999999999999999


Q ss_pred             cEEEEEEeCCCHhHHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCC-CC
Q 027949           89 MGILLVYDVTDESSFNNIRNWIRNIEQHAS---DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT-NL  164 (216)
Q Consensus        89 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~  164 (216)
                      |++|+|||++++.++..+..|+..+.....   .+.|++||+||+|+.+....+..+++..++..++++++++||++ |.
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~  177 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK  177 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence            999999999999999999999999988765   58999999999999652345677889999999999999999999 99


Q ss_pred             CHHHHHHHHHHHHHHHhhc
Q 027949          165 NVEEVFFSIARDIKQRLAD  183 (216)
Q Consensus       165 gi~~l~~~l~~~i~~~~~~  183 (216)
                      |++++|++|.+.+.+...+
T Consensus       178 gi~~l~~~i~~~~~~~~~~  196 (208)
T 2yc2_C          178 DADAPFLSIATTFYRNYED  196 (208)
T ss_dssp             --CHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHh
Confidence            9999999999998876543

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2e-31  Score=197.73  Aligned_cols=165  Identities=28%  Similarity=0.549  Sum_probs=143.5

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      ....++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus        15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   93 (194)
T 2atx_A           15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF   93 (194)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence            35679999999999999999999999988777777766444 45667788889999999999999999999999999999


Q ss_pred             EEEEeCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEE
Q 027949           92 LLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFET  158 (216)
Q Consensus        92 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~  158 (216)
                      |+|||+++++++..+. .|+..+..... +.|+++|+||+|+.+..           +.+..+++..++..+++ +++++
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  172 (194)
T 2atx_A           94 LICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC  172 (194)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEe
Confidence            9999999999999987 68888877654 78999999999996532           35677888899999997 99999


Q ss_pred             ecCCCCCHHHHHHHHHHHHH
Q 027949          159 SAKTNLNVEEVFFSIARDIK  178 (216)
Q Consensus       159 Sa~~~~gi~~l~~~l~~~i~  178 (216)
                      ||++|.|++++|++|.+.++
T Consensus       173 Sa~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          173 SALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHHh
Confidence            99999999999999998875

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=2.2e-31  Score=194.73  Aligned_cols=164  Identities=24%  Similarity=0.397  Sum_probs=137.1

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..+||+|+|.+|||||||+++|.+..+.. +.++.+ +.....+..++..+.+.+||++|++.     ..+++++|++|+
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il   78 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTES-EQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF   78 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSS-SEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcc-eeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence            46999999999999999999999988875 556655 33456677888889999999999875     457788999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCC-CCCccChHHHHHHHHHh-CCeEEEEecCCCCCHHH
Q 027949           94 VYDVTDESSFNNIRNWIRNIEQHA---SDNVNKILVGNKADMDE-SKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEE  168 (216)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~  168 (216)
                      |||+++++++..+..|+..+....   ..+.|+++|+||+|+.+ ..+.+..+++..++... +++++++||++|.|+++
T Consensus        79 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  158 (178)
T 2iwr_A           79 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDR  158 (178)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHH
Confidence            999999999999999766665443   35789999999999852 24556778888888877 58999999999999999


Q ss_pred             HHHHHHHHHHHHhhcc
Q 027949          169 VFFSIARDIKQRLADT  184 (216)
Q Consensus       169 l~~~l~~~i~~~~~~~  184 (216)
                      +|++|.+.+.+.....
T Consensus       159 lf~~l~~~~~~~~~~~  174 (178)
T 2iwr_A          159 VFQEVAQKVVTLRKQQ  174 (178)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            9999999998876554

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=1.4e-31  Score=193.43  Aligned_cols=163  Identities=36%  Similarity=0.662  Sum_probs=139.6

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .++|+|+|.+|+|||||+++|.+..+...+.++.+... ...+.+++..+.+.+||+||.+.+...+..+++.+|++++|
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   82 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence            48999999999999999999999887766666665443 45567888888999999999999998999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q 027949           95 YDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI  173 (216)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  173 (216)
                      ||++++.++..+..|+..+..... .+.|+++|+||+|+.+ ......+++..++...+++++++||++|.|++++|++|
T Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  161 (168)
T 1u8z_A           83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED-KRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccc-cCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence            999999999999999988877654 4799999999999865 34467788888999999999999999999999999999


Q ss_pred             HHHHHH
Q 027949          174 ARDIKQ  179 (216)
Q Consensus       174 ~~~i~~  179 (216)
                      .+.+.+
T Consensus       162 ~~~i~~  167 (168)
T 1u8z_A          162 MREIRA  167 (168)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998753

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=2.3e-31  Score=192.34  Aligned_cols=163  Identities=33%  Similarity=0.454  Sum_probs=121.0

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+|+|.+|+|||||++++.+..... ..++.+... ...+..++..+.+.+||++|.+.+...+..+++.+|++++|
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   79 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccC-CCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence            4899999999999999999999776542 223333333 45667888889999999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q 027949           95 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI  173 (216)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  173 (216)
                      ||+++++++..+..|+..+.... ..+.|+++|+||+|+.+ ......++...++...+++++++||++|.|++++|++|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  158 (166)
T 3q72_A           80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR-SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV  158 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCS-SCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccc-ccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Confidence            99999999999999988887653 35799999999999965 45677888889999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027949          174 ARDIKQR  180 (216)
Q Consensus       174 ~~~i~~~  180 (216)
                      .+.+.++
T Consensus       159 ~~~~~~~  165 (166)
T 3q72_A          159 VRQIRLR  165 (166)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9998765

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3e-31  Score=199.39  Aligned_cols=171  Identities=30%  Similarity=0.406  Sum_probs=137.0

Q ss_pred             CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCccc-ccccccccccc
Q 027949           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRTITTAYYRG   87 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~   87 (216)
                      ......+||+|+|.+|||||||+++|.+.... ....++.+.+.....+.+++..+.+.+|||+|.+. +..+...+++.
T Consensus        32 ~~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~  111 (211)
T 2g3y_A           32 ESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV  111 (211)
T ss_dssp             ---CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred             ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence            34556799999999999999999999975431 12223455566667788899889999999999876 45566778899


Q ss_pred             ccEEEEEEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCH
Q 027949           88 AMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV  166 (216)
Q Consensus        88 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  166 (216)
                      +|++|+|||++++.+|..+..|+..+.... ..+.|++||+||+|+.+ .+.+..++...++..++++++++||++|.|+
T Consensus       112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~-~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v  190 (211)
T 2g3y_A          112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR-CREVSVSEGRACAVVFDCKFIETSAAVQHNV  190 (211)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhc-CceEeHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence            999999999999999999999988776532 34799999999999964 3456667778888889999999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 027949          167 EEVFFSIARDIKQRL  181 (216)
Q Consensus       167 ~~l~~~l~~~i~~~~  181 (216)
                      +++|++|++.+....
T Consensus       191 ~elf~~l~~~i~~~~  205 (211)
T 2g3y_A          191 KELFEGIVRQVRLRR  205 (211)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999886543

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=5.6e-31  Score=196.60  Aligned_cols=167  Identities=34%  Similarity=0.592  Sum_probs=142.8

Q ss_pred             CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027949           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      .....+||+|+|.+|+|||||++++.+..+...+.++.+..+. ..+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus        21 m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~   99 (201)
T 2gco_A           21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV   99 (201)
T ss_dssp             -CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSE
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCE
Confidence            4466799999999999999999999999887777777665554 346778888999999999999999999999999999


Q ss_pred             EEEEEeCCCHhHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEE
Q 027949           91 ILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFE  157 (216)
Q Consensus        91 ~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~  157 (216)
                      +|+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+..           +.+..+++..++...+. ++++
T Consensus       100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  178 (201)
T 2gco_A          100 ILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLE  178 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEE
Confidence            9999999999999998 56887777654 378999999999986531           34566788888988887 8999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHH
Q 027949          158 TSAKTNLNVEEVFFSIARDIKQ  179 (216)
Q Consensus       158 ~Sa~~~~gi~~l~~~l~~~i~~  179 (216)
                      +||++|.|++++|++|.+.+++
T Consensus       179 ~SA~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          179 CSAKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHC
T ss_pred             eeCCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999988753

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=1.7e-31  Score=196.72  Aligned_cols=166  Identities=24%  Similarity=0.538  Sum_probs=141.6

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      ....++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   82 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   82 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence            34569999999999999999999999988777777766554 34567788889999999999999999999999999999


Q ss_pred             EEEEeCCCHhHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhC-CeEEEE
Q 027949           92 LLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMDES-----------KRAVPTSKGQALADEYG-IKFFET  158 (216)
Q Consensus        92 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~  158 (216)
                      |+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+.           .+.+..+++..++..++ ++|+++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  161 (184)
T 1m7b_A           83 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  161 (184)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence            999999999999998 67888887664 37999999999998642           24567788889999888 799999


Q ss_pred             ecC-CCCCHHHHHHHHHHHHHH
Q 027949          159 SAK-TNLNVEEVFFSIARDIKQ  179 (216)
Q Consensus       159 Sa~-~~~gi~~l~~~l~~~i~~  179 (216)
                      ||+ ++.|++++|++|.+.++.
T Consensus       162 Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          162 SALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             BTTTBHHHHHHHHHHHHHHHHT
T ss_pred             eecCCCcCHHHHHHHHHHHHhc
Confidence            998 689999999999998764

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=2.6e-31  Score=191.78  Aligned_cols=163  Identities=38%  Similarity=0.644  Sum_probs=141.6

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .++|+|+|.+|+|||||++++.+..+...+.++.+. .....+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcce-eEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            489999999999999999999998887666666553 3466677888888999999999999998889999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q 027949           95 YDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI  173 (216)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  173 (216)
                      ||++++.++..+..|+..+..... .+.|+++|+||+|+.+ ......++...++..++++++++||++|.|++++|++|
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  160 (167)
T 1kao_A           82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES-EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI  160 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccc-cccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence            999999999999999888876543 5799999999999864 34566778888999999999999999999999999999


Q ss_pred             HHHHHH
Q 027949          174 ARDIKQ  179 (216)
Q Consensus       174 ~~~i~~  179 (216)
                      .+.+.+
T Consensus       161 ~~~~~~  166 (167)
T 1kao_A          161 VRQMNY  166 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            988753

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=100.00  E-value=4.2e-34  Score=213.22  Aligned_cols=169  Identities=65%  Similarity=1.101  Sum_probs=142.2

Q ss_pred             CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027949           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (216)
                      ...++.++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus        28 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d  107 (199)
T 3l0i_B           28 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH  107 (199)
T ss_dssp             CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCS
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCC
Confidence            34567899999999999999999999999888888888888888899999998899999999999999999999999999


Q ss_pred             EEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q 027949           90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEV  169 (216)
Q Consensus        90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  169 (216)
                      ++|+|||++++.++..+..|+..+......+.|++||+||+|+.+ ......+++..++..++++++++||++|.|++++
T Consensus       108 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l  186 (199)
T 3l0i_B          108 GIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT-KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQS  186 (199)
T ss_dssp             EEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC---CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCc-cccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence            999999999999999999999999877666899999999999965 3445556677888889999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027949          170 FFSIARDIKQ  179 (216)
Q Consensus       170 ~~~l~~~i~~  179 (216)
                      |++|.+.+.+
T Consensus       187 ~~~l~~~l~~  196 (199)
T 3l0i_B          187 FMTMAAEIKK  196 (199)
T ss_dssp             HHHHTTTTTT
T ss_pred             HHHHHHHHHH
Confidence            9999877654

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.5e-31  Score=196.89  Aligned_cols=166  Identities=36%  Similarity=0.579  Sum_probs=143.5

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ...++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||+||.+. ...+..+++.+|++|
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii  103 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV  103 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence            4569999999999999999999999988777777766444 45567788889999999999887 667888899999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCC-CHHHHH
Q 027949           93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL-NVEEVF  170 (216)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~l~  170 (216)
                      +|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+ .+.+..+++..++...+++++++||++|. |++++|
T Consensus       104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~  182 (196)
T 2atv_A          104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH-SRQVSTEEGEKLATELACAFYECSACTGEGNITEIF  182 (196)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccccc-ccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHH
Confidence            9999999999999999988887754 35799999999999965 34567788889999999999999999999 999999


Q ss_pred             HHHHHHHHHHh
Q 027949          171 FSIARDIKQRL  181 (216)
Q Consensus       171 ~~l~~~i~~~~  181 (216)
                      ++|.+.+.++.
T Consensus       183 ~~l~~~i~~~~  193 (196)
T 2atv_A          183 YELCREVRRRR  193 (196)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhhc
Confidence            99999998764

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=3.2e-31  Score=191.60  Aligned_cols=162  Identities=36%  Similarity=0.676  Sum_probs=140.1

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .++|+|+|.+|+|||||+++|.+..+...+.++.+... ...+..++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   81 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            48999999999999999999999888777777766444 35566777788999999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh-CCeEEEEecCCCCCHHHHHHH
Q 027949           95 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEEVFFS  172 (216)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~  172 (216)
                      ||++++.++..+..|+..+.... ..+.|+++|+||+|+.+ ......+++..++... +++++++||++|.|++++|++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (167)
T 1c1y_A           82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED-ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD  160 (167)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccc-cccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence            99999999999999988887653 35799999999999965 3456677888888887 789999999999999999999


Q ss_pred             HHHHHH
Q 027949          173 IARDIK  178 (216)
Q Consensus       173 l~~~i~  178 (216)
                      |.+.+.
T Consensus       161 l~~~i~  166 (167)
T 1c1y_A          161 LVRQIN  166 (167)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998763

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=100.00  E-value=3e-31  Score=200.04  Aligned_cols=167  Identities=34%  Similarity=0.594  Sum_probs=123.6

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ...++|+|+|.+|+|||||+++|++..+...+.++.+. .....+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFE-RYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCE-EEEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccce-eEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            45699999999999999999999998877666666543 33556778888899999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEEe
Q 027949           93 LVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETS  159 (216)
Q Consensus        93 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~S  159 (216)
                      +|||++++.++..+. .|+..+.... .+.|++||+||+|+.+..           ..+..+++..++...++ +++++|
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  189 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS  189 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence            999999999999987 6888887665 468999999999986532           24566778889999997 999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHh
Q 027949          160 AKTNLNVEEVFFSIARDIKQRL  181 (216)
Q Consensus       160 a~~~~gi~~l~~~l~~~i~~~~  181 (216)
                      |++|.|++++|++|.+.+.+..
T Consensus       190 A~~g~gi~el~~~l~~~~~~~~  211 (214)
T 2j1l_A          190 ARLHDNVHAVFQEAAEVALSSR  211 (214)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHC-
T ss_pred             CCCCCCHHHHHHHHHHHHHHhh
Confidence            9999999999999999988653

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=100.00  E-value=9.2e-32  Score=203.14  Aligned_cols=173  Identities=30%  Similarity=0.495  Sum_probs=146.5

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEEC-CeEEEEEEEeCCCccccccccccccccccE
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      ....+||+|+|.+|+|||||+++|++..+...+.++.+.......+... +..+.+.+||+||.+.+...+..+++.+|+
T Consensus         8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (218)
T 4djt_A            8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG   87 (218)
T ss_dssp             --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred             ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence            4567999999999999999999999988877777777766665555554 444889999999999999999999999999


Q ss_pred             EEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q 027949           91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF  170 (216)
Q Consensus        91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  170 (216)
                      +|+|||++++.++..+..|+..+......+.|+++|+||+|+.+ ......+.+..++...+++++++||++|.|++++|
T Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~  166 (218)
T 4djt_A           88 AILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN-RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF  166 (218)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC-----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-ccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Confidence            99999999999999999999999887777799999999999965 34567778888888889999999999999999999


Q ss_pred             HHHHHHHHHHhhccc
Q 027949          171 FSIARDIKQRLADTD  185 (216)
Q Consensus       171 ~~l~~~i~~~~~~~~  185 (216)
                      ++|.+.+.+......
T Consensus       167 ~~l~~~~~~~~~~~~  181 (218)
T 4djt_A          167 LHLARIFTGRPDLIF  181 (218)
T ss_dssp             HHHHHHHHCCTTCCB
T ss_pred             HHHHHHHhccccccc
Confidence            999999987655443

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.98  E-value=3.9e-31  Score=194.46  Aligned_cols=164  Identities=32%  Similarity=0.595  Sum_probs=141.4

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..++|+|+|.+|+|||||+++|.+..+...+.++.+.. ....+.+++..+.+.+||+||++.+...+..+++.+|++|+
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   82 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCE-EEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccce-eEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence            45999999999999999999999988877666666533 34566788888999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEEec
Q 027949           94 VYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETSA  160 (216)
Q Consensus        94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa  160 (216)
                      |||++++.++..+. .|+..+..... +.|+++|+||+|+.+..           ..+..++...++...+. +++++||
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  161 (186)
T 1mh1_A           83 CFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  161 (186)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecC
Confidence            99999999999987 68888877654 78999999999986531           34566778888888886 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q 027949          161 KTNLNVEEVFFSIARDIKQ  179 (216)
Q Consensus       161 ~~~~gi~~l~~~l~~~i~~  179 (216)
                      ++|.|++++|++|.+.+.+
T Consensus       162 ~~g~gi~~l~~~l~~~~~~  180 (186)
T 1mh1_A          162 LTQRGLKTVFDEAIRAVLC  180 (186)
T ss_dssp             TTCTTHHHHHHHHHHHHSC
T ss_pred             CCccCHHHHHHHHHHHHhc
Confidence            9999999999999998754

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.98  E-value=5.2e-31  Score=195.99  Aligned_cols=171  Identities=17%  Similarity=0.314  Sum_probs=129.9

Q ss_pred             cCCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCC-ccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 027949            8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR   86 (216)
Q Consensus         8 ~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   86 (216)
                      .........+|+|+|.+|||||||+++|++..+.. .+.++.+  .....+...+  +.+.+|||||++.+..++..+++
T Consensus        10 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~   85 (199)
T 4bas_A           10 HMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG--YNVETFEKGR--VAFTVFDMGGAKKFRGLWETYYD   85 (199)
T ss_dssp             ------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS--EEEEEEEETT--EEEEEEEECCSGGGGGGGGGGCT
T ss_pred             cccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc--eeEEEEEeCC--EEEEEEECCCCHhHHHHHHHHHh
Confidence            34556777999999999999999999999998876 6667666  3444455555  88999999999999999999999


Q ss_pred             cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcC--------CCCcEEEEEeCCCCCCCCCccChHHHH---HHHHHhCCeE
Q 027949           87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHAS--------DNVNKILVGNKADMDESKRAVPTSKGQ---ALADEYGIKF  155 (216)
Q Consensus        87 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--------~~~p~ivv~nK~Dl~~~~~~~~~~~~~---~~~~~~~~~~  155 (216)
                      .+|++|+|||+++++++..+..|+..+.....        .+.|++||+||+|+.+...........   .++...++++
T Consensus        86 ~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (199)
T 4bas_A           86 NIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVI  165 (199)
T ss_dssp             TCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEE
T ss_pred             cCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEE
Confidence            99999999999999999999988887765421        268999999999996532211111111   1113456899


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHhh
Q 027949          156 FETSAKTNLNVEEVFFSIARDIKQRLA  182 (216)
Q Consensus       156 ~~~Sa~~~~gi~~l~~~l~~~i~~~~~  182 (216)
                      +++||++|.|++++|++|.+.+.+...
T Consensus       166 ~~~Sa~~g~gv~~l~~~l~~~~~~~~~  192 (199)
T 4bas_A          166 FASNGLKGTGVHEGFSWLQETASRQSG  192 (199)
T ss_dssp             EECBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred             EEeeCCCccCHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999987643

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.98  E-value=2.3e-30  Score=186.53  Aligned_cols=162  Identities=36%  Similarity=0.621  Sum_probs=140.5

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .++|+|+|.+|+|||||++++.+..+...+.++.+. .....+..++..+.+.+||+||.+.+...+..+++.+|++++|
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccce-EEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            489999999999999999999998877666666543 3355667788888999999999999888889999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q 027949           95 YDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI  173 (216)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  173 (216)
                      ||++++.++..+..|+..+..... .+.|+++|+||+|+.+  .....+....++..++++++++||++|.|++++|++|
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (166)
T 2ce2_X           82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA--RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL  159 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC--CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh--cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            999999999999999988877653 4799999999999865  4456778888999999999999999999999999999


Q ss_pred             HHHHHH
Q 027949          174 ARDIKQ  179 (216)
Q Consensus       174 ~~~i~~  179 (216)
                      .+.+.+
T Consensus       160 ~~~~~~  165 (166)
T 2ce2_X          160 VREIRQ  165 (166)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            988753

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=1.3e-30  Score=195.49  Aligned_cols=166  Identities=35%  Similarity=0.608  Sum_probs=136.8

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ...++|+|+|.+|+|||||+++|.+..+...+.++.+.... ..+..++..+.+.+||+||++.+...+..+++.+|++|
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            45689999999999999999999999887767676665443 34677888899999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEEe
Q 027949           93 LVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETS  159 (216)
Q Consensus        93 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~S  159 (216)
                      +|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+..           +.+..++...++...+. +++++|
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS  180 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence            99999999999998 56888777654 378999999999986531           34566778888888887 999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHH
Q 027949          160 AKTNLNVEEVFFSIARDIKQR  180 (216)
Q Consensus       160 a~~~~gi~~l~~~l~~~i~~~  180 (216)
                      |++|.|++++|++|.+.+.+.
T Consensus       181 A~~g~gi~el~~~l~~~i~~~  201 (207)
T 2fv8_A          181 AKTKEGVREVFETATRAALQK  201 (207)
T ss_dssp             TTTCTTHHHHHHHHHHHHHSC
T ss_pred             CCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999988753

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.97  E-value=2.2e-31  Score=197.60  Aligned_cols=169  Identities=23%  Similarity=0.297  Sum_probs=135.5

Q ss_pred             CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCc----------cccceeeeEEEEEE-EECCeEEEEEEEeCCCcccccc
Q 027949           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTS----------FITTIGIDFKIRTI-ELDGKRIKLQIWDTAGQERFRT   79 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~~~~   79 (216)
                      ..+..+||+|+|.+|||||||++.+.+......          ..++.+.++....+ ..++..+.+.+|||||++.+..
T Consensus        10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~   89 (198)
T 3t1o_A           10 NREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA   89 (198)
T ss_dssp             TTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence            456779999999999999999977766433221          22344434433334 5567778999999999999999


Q ss_pred             ccccccccccEEEEEEeCC------CHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC
Q 027949           80 ITTAYYRGAMGILLVYDVT------DESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI  153 (216)
Q Consensus        80 ~~~~~~~~~d~~i~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  153 (216)
                      .+..+++++|++|+|||++      +.+++..+..|+..+.. ...+.|+++|+||+|+.+   ....+++..++...++
T Consensus        90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~  165 (198)
T 3t1o_A           90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRDLPD---ALPVEMVRAVVDPEGK  165 (198)
T ss_dssp             HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTTSTT---CCCHHHHHHHHCTTCC
T ss_pred             HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchhccc---ccCHHHHHHHHHhcCC
Confidence            9999999999999999999      55677777778777632 335799999999999865   3677888999999998


Q ss_pred             -eEEEEecCCCCCHHHHHHHHHHHHHHHhhc
Q 027949          154 -KFFETSAKTNLNVEEVFFSIARDIKQRLAD  183 (216)
Q Consensus       154 -~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~  183 (216)
                       +++++||++|.|++++|++|.+.+.++..+
T Consensus       166 ~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~  196 (198)
T 3t1o_A          166 FPVLEAVATEGKGVFETLKEVSRLVLARVAG  196 (198)
T ss_dssp             SCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred             ceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence             999999999999999999999999887643

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.97  E-value=1.7e-31  Score=202.13  Aligned_cols=170  Identities=29%  Similarity=0.590  Sum_probs=147.9

Q ss_pred             CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027949           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (216)
                      ......+||+|+|.+|||||||+++++...+...+.++.+.+.....+..++..+.+.+||+||++.+..++..+++++|
T Consensus        10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   89 (221)
T 3gj0_A           10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ   89 (221)
T ss_dssp             TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCC
T ss_pred             CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCC
Confidence            35567799999999999999999998777766677778877888888888988899999999999999999999999999


Q ss_pred             EEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q 027949           90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEV  169 (216)
Q Consensus        90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  169 (216)
                      ++|+|||++++.++..+..|+..+..... +.|+++|+||+|+.+...   ......++...+++++++||++|.|++++
T Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  165 (221)
T 3gj0_A           90 CAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKV---KAKSIVFHRKKNLQYYDISAKSNYNFEKP  165 (221)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHST-TCCEEEEEECTTSSSCSS---CGGGCCHHHHHTCEEEECBGGGTBTTTHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCccccccc---cHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            99999999999999999999999887754 789999999999965322   22555677888999999999999999999


Q ss_pred             HHHHHHHHHHHhhc
Q 027949          170 FFSIARDIKQRLAD  183 (216)
Q Consensus       170 ~~~l~~~i~~~~~~  183 (216)
                      |.+|.+.+......
T Consensus       166 ~~~l~~~l~~~~~~  179 (221)
T 3gj0_A          166 FLWLARKLIGDPNL  179 (221)
T ss_dssp             HHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHhCccc
Confidence            99999999876543

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=1.4e-30  Score=188.99  Aligned_cols=162  Identities=33%  Similarity=0.503  Sum_probs=137.2

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+..++..+.+.+||+||.+.+...+..+++.+|++++|
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   81 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence            58999999999999999999999887766666655333 34556778888999999999999988889999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949           95 YDVTDESSFNNIRNWIRNIEQHAS--DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS  172 (216)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  172 (216)
                      ||++++.++..+..|+..+.....  .+.|+++|+||+|+.+ .......+...++...+++++++||++|.|++++|++
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (172)
T 2erx_A           82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP-SREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  160 (172)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccc-ccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence            999999999998888887776532  3689999999999864 3445667788888889999999999999999999999


Q ss_pred             HHHHHH
Q 027949          173 IARDIK  178 (216)
Q Consensus       173 l~~~i~  178 (216)
                      |.+.+.
T Consensus       161 l~~~~~  166 (172)
T 2erx_A          161 LLNLEK  166 (172)
T ss_dssp             HHHTCC
T ss_pred             HHHHHh
Confidence            987653

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.97  E-value=8e-30  Score=189.12  Aligned_cols=167  Identities=30%  Similarity=0.439  Sum_probs=134.2

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCC--CCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccc-ccccccccccccc
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGS--FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRTITTAYYRGAM   89 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d   89 (216)
                      ...+||+|+|.+|||||||+++|.+..  +...+ ++.+.+.....+.+++..+.+.+||++|... +..+...+++.+|
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~   82 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD   82 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence            456999999999999999999999643  23222 3355566667788899889999999999765 4556777888999


Q ss_pred             EEEEEEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHH
Q 027949           90 GILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE  168 (216)
Q Consensus        90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (216)
                      ++++|||++++++|..+..|+..+.... ..+.|+++|+||+|+.+ .+.+..++...++...+++|+++||++|.|+++
T Consensus        83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~-~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~  161 (192)
T 2cjw_A           83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR-XREVSVSEGRAXAVVFDXKFIETSAAVQHNVKE  161 (192)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhc-cccccHHHHHHHHHHhCCceEEeccccCCCHHH
Confidence            9999999999999999999988776643 34789999999999864 345666777788888889999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 027949          169 VFFSIARDIKQRL  181 (216)
Q Consensus       169 l~~~l~~~i~~~~  181 (216)
                      +|++|.+.+....
T Consensus       162 lf~~l~~~~~~~~  174 (192)
T 2cjw_A          162 LFEGIVRQVRLRR  174 (192)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999986553

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.97  E-value=3.3e-31  Score=194.28  Aligned_cols=163  Identities=32%  Similarity=0.637  Sum_probs=125.2

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..++|+|+|.+|+|||||++++.+..+...+.++.+... ...+..++..+.+.+||+||++.+...+..+++++|++++
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   85 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   85 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSCCC----------C-BCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence            459999999999999999999999887766666654332 2234456666888899999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCC---------ccChHHHHHHHHHhCC-eEEEEecCC
Q 027949           94 VYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESKR---------AVPTSKGQALADEYGI-KFFETSAKT  162 (216)
Q Consensus        94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~-~~~~~Sa~~  162 (216)
                      |||++++.++..+. .|+..+..... +.|+++|+||+|+.+...         .+..+++..++..++. +++++||++
T Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  164 (182)
T 3bwd_D           86 AFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKS  164 (182)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCC
Confidence            99999999999987 58888877654 799999999999865322         1466778889998996 999999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 027949          163 NLNVEEVFFSIARDIK  178 (216)
Q Consensus       163 ~~gi~~l~~~l~~~i~  178 (216)
                      |.|++++|++|.+.++
T Consensus       165 ~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          165 QENVKGVFDAAIRVVL  180 (182)
T ss_dssp             CTTHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999998764

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.97  E-value=2.3e-30  Score=193.79  Aligned_cols=164  Identities=32%  Similarity=0.602  Sum_probs=137.7

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      ....+||+|+|.+|+|||||++++++..+...+.++.+ +.....+..++..+.+.+||+||.+.+...+..+++.+|++
T Consensus        27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  105 (204)
T 4gzl_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF  105 (204)
T ss_dssp             ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence            45569999999999999999999999888777766664 44556677788889999999999999999999999999999


Q ss_pred             EEEEeCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEE
Q 027949           92 LLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFET  158 (216)
Q Consensus        92 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~  158 (216)
                      |+|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+..           ..+..+++..++...++ +++++
T Consensus       106 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  184 (204)
T 4gzl_A          106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  184 (204)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence            9999999999999997 6888887765 479999999999986532           12566788888988886 69999


Q ss_pred             ecCCCCCHHHHHHHHHHHH
Q 027949          159 SAKTNLNVEEVFFSIARDI  177 (216)
Q Consensus       159 Sa~~~~gi~~l~~~l~~~i  177 (216)
                      ||++|.|++++|++|.+.+
T Consensus       185 SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          185 SALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             CTTTCTTHHHHHHHHHHTT
T ss_pred             eCCCCCCHHHHHHHHHHHh
Confidence            9999999999999998754

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.97  E-value=6.7e-30  Score=188.94  Aligned_cols=164  Identities=18%  Similarity=0.332  Sum_probs=129.5

Q ss_pred             CCCCCceEEEEEEcCCCCcHHHHHHHHHcCC-CCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q 027949            9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGS-FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG   87 (216)
Q Consensus         9 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   87 (216)
                      .......++|+|+|.+|+|||||+++|.+.. +...+.++.+  .....+.+++  +.+.+||+||++.+...+..++++
T Consensus        15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~   90 (190)
T 2h57_A           15 VPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKE   90 (190)
T ss_dssp             ------CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGG
T ss_pred             ccCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhc
Confidence            3445567999999999999999999999887 4555555554  5556666776  789999999999999999999999


Q ss_pred             ccEEEEEEeCCCHhHHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEe
Q 027949           88 AMGILLVYDVTDESSFNNIRNWIRNIEQHAS---DNVNKILVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETS  159 (216)
Q Consensus        88 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~S  159 (216)
                      +|++|+|||++++.++..+..|+..+.....   .+.|+++|+||+|+.+.   ...+++..+..     ..+++++++|
T Consensus        91 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~S  167 (190)
T 2h57_A           91 GQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA---VTSVKVSQLLCLENIKDKPWHICASD  167 (190)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC---CCHHHHHHHHTGGGCCSSCEEEEECB
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC---CCHHHHHHHhChhhccCCceEEEEcc
Confidence            9999999999999999999998888776533   47999999999998642   33445555543     2357899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHH
Q 027949          160 AKTNLNVEEVFFSIARDIKQ  179 (216)
Q Consensus       160 a~~~~gi~~l~~~l~~~i~~  179 (216)
                      |++|.|++++|++|.+.+.+
T Consensus       168 a~~~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          168 AIKGEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             TTTTBTHHHHHHHHHHHC--
T ss_pred             CCCCcCHHHHHHHHHHHHHH
Confidence            99999999999999987754

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.97  E-value=7e-29  Score=184.91  Aligned_cols=169  Identities=50%  Similarity=0.871  Sum_probs=147.1

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ++.++|+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|.+.+...+..+++.+++++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i   82 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   82 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence            46799999999999999999999999887777788877888888999998899999999999999888888899999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS  172 (216)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  172 (216)
                      +|+|+.+..++..+..|+..+........|+++|+||+|+.+ .......+++.++...++.++++||+++.|++++|++
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~-~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~  161 (199)
T 2f9l_A           83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH-LRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKN  161 (199)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc-ccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            999999999999888888877665555789999999999964 3445667788899999999999999999999999999


Q ss_pred             HHHHHHHHhh
Q 027949          173 IARDIKQRLA  182 (216)
Q Consensus       173 l~~~i~~~~~  182 (216)
                      |.+.+.+...
T Consensus       162 l~~~~~~~~~  171 (199)
T 2f9l_A          162 ILTEIYRIVS  171 (199)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999987653

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.97  E-value=8.7e-31  Score=193.54  Aligned_cols=165  Identities=22%  Similarity=0.401  Sum_probs=128.9

Q ss_pred             CCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027949            9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   88 (216)
Q Consensus         9 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   88 (216)
                      .......++|+|+|.+|+|||||+++|++..+...+.++.+..+.  .+...+  +.+.+||+||++.+...+..+++.+
T Consensus        16 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~   91 (188)
T 1zd9_A           16 PRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGN--VTIKLWDIGGQPRFRSMWERYCRGV   91 (188)
T ss_dssp             ---CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETT--EEEEEEEECCSHHHHTTHHHHHTTC
T ss_pred             ccCCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeCC--EEEEEEECCCCHhHHHHHHHHHccC
Confidence            344556799999999999999999999998887667777665443  455555  7899999999999999999999999


Q ss_pred             cEEEEEEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEecCC
Q 027949           89 MGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKT  162 (216)
Q Consensus        89 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~  162 (216)
                      |++|+|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+..   ..++......     ..+++++++||++
T Consensus        92 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~SA~~  168 (188)
T 1zd9_A           92 SAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL---DEKELIEKMNLSAIQDREICCYSISCKE  168 (188)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC---CHHHHHHHhChhhhccCCeeEEEEECCC
Confidence            99999999999999999998887776532 2479999999999986521   2222222211     2346899999999


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 027949          163 NLNVEEVFFSIARDIKQR  180 (216)
Q Consensus       163 ~~gi~~l~~~l~~~i~~~  180 (216)
                      |.|++++|++|.+.+.++
T Consensus       169 g~gv~~l~~~l~~~~~~~  186 (188)
T 1zd9_A          169 KDNIDITLQWLIQHSKSR  186 (188)
T ss_dssp             CTTHHHHHHHHHHTCC--
T ss_pred             CCCHHHHHHHHHHHHHhh
Confidence            999999999999876543

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.97  E-value=8e-30  Score=184.98  Aligned_cols=158  Identities=23%  Similarity=0.421  Sum_probs=126.4

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..++|+|+|.+|+|||||+++|.+..+.. +.++.+  .....+.+++  +.+.+||+||++.+...+..+++.+|++|+
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   80 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIG--FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   80 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSS--EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCc--cceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence            34999999999999999999999887753 445544  4455666665  789999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHH-----HHHhCCeEEEEecCCCCCHH
Q 027949           94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQAL-----ADEYGIKFFETSAKTNLNVE  167 (216)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~  167 (216)
                      |+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+..   ...+....     +...+++++++||++|.|++
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  157 (171)
T 1upt_A           81 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM---TSSEMANSLGLPALKDRKWQIFKTSATKGTGLD  157 (171)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC---CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC---CHHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence            999999999999888887765532 2478999999999986532   12222222     22345689999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027949          168 EVFFSIARDIKQ  179 (216)
Q Consensus       168 ~l~~~l~~~i~~  179 (216)
                      ++|++|.+.+.+
T Consensus       158 ~l~~~l~~~i~~  169 (171)
T 1upt_A          158 EAMEWLVETLKS  169 (171)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhh
Confidence            999999998764

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.97  E-value=1.1e-29  Score=186.50  Aligned_cols=159  Identities=19%  Similarity=0.303  Sum_probs=124.4

Q ss_pred             CCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccccc
Q 027949           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (216)
                      ......++|+|+|.+|+|||||+++|.+..+ ..+.++.+..  ...+.+++  +.+.+||+||.+.+...+..+++.+|
T Consensus        16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d   90 (181)
T 2h17_A           16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTE   90 (181)
T ss_dssp             -----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSS--CEEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCC
T ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCcee--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCC
Confidence            3455679999999999999999999999887 3444555433  34556666  78999999999999999999999999


Q ss_pred             EEEEEEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHH-----HHhCCeEEEEecCCC
Q 027949           90 GILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETSAKTN  163 (216)
Q Consensus        90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~  163 (216)
                      ++|+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.   ...+++....     ...+++++++||++|
T Consensus        91 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g  167 (181)
T 2h17_A           91 FVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC---MTVAEISQFLKLTSIKDHQWHIQACCALTG  167 (181)
T ss_dssp             EEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCCSSCEEEEECBTTTT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC---CCHHHHHHHhCcccccCCceEEEEccCCCC
Confidence            9999999999999999998887776542 347999999999998542   2333333332     123468999999999


Q ss_pred             CCHHHHHHHHHHH
Q 027949          164 LNVEEVFFSIARD  176 (216)
Q Consensus       164 ~gi~~l~~~l~~~  176 (216)
                      .|++++|++|.+.
T Consensus       168 ~gi~~l~~~l~~~  180 (181)
T 2h17_A          168 EGLCQGLEWMMSR  180 (181)
T ss_dssp             BTHHHHHHHHHTC
T ss_pred             cCHHHHHHHHHhh
Confidence            9999999999764

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.97  E-value=2.7e-28  Score=180.68  Aligned_cols=168  Identities=51%  Similarity=0.897  Sum_probs=147.4

Q ss_pred             CCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccc
Q 027949            9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   88 (216)
Q Consensus         9 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   88 (216)
                      ..+.++.++|+|+|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.+
T Consensus        23 ~~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~  102 (191)
T 1oix_A           23 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGA  102 (191)
T ss_dssp             -CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTC
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcC
Confidence            34556789999999999999999999999988878888888888888999999888899999999998888888888999


Q ss_pred             cEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHH
Q 027949           89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE  168 (216)
Q Consensus        89 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (216)
                      +++++|+|..+..++..+..|+..+........|+++++||+|+.+ ........++.++...++.++++||+++.|+++
T Consensus       103 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~-~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~  181 (191)
T 1oix_A          103 VGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH-LRAVPTDEARAFAEKNGLSFIETSALDSTNVEA  181 (191)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999998888888877665555789999999999864 344567788889999999999999999999999


Q ss_pred             HHHHHHHHH
Q 027949          169 VFFSIARDI  177 (216)
Q Consensus       169 l~~~l~~~i  177 (216)
                      +|++|.+.+
T Consensus       182 l~~~l~~~i  190 (191)
T 1oix_A          182 AFQTILTEI  190 (191)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998865

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.97  E-value=7.9e-29  Score=182.45  Aligned_cols=160  Identities=23%  Similarity=0.403  Sum_probs=128.9

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ...++|+|+|.+|+|||||++++.+.. ...+.++.+  .....+.+++  +.+.+||+||++.+...+..+++++|++|
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   90 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI   90 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS--EEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            456999999999999999999999887 555666655  4445566666  78999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEecCCCCCH
Q 027949           93 LVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNV  166 (216)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi  166 (216)
                      +|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+.   ...++......     ..+++++++||++|.|+
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  167 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA---LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDL  167 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC---CCHHHHHHHhChhhccCCceEEEEeeCCCCCCH
Confidence            999999999999998888777654 2247999999999998653   22333333222     23568999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027949          167 EEVFFSIARDIKQR  180 (216)
Q Consensus       167 ~~l~~~l~~~i~~~  180 (216)
                      +++|++|.+.+.++
T Consensus       168 ~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          168 LPGIDWLLDDISSR  181 (186)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999988654

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=7.5e-30  Score=188.23  Aligned_cols=160  Identities=21%  Similarity=0.322  Sum_probs=124.9

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ...++|+|+|.+|+|||||+++|.+..+. .+.++.+  .....+.+++  +.+.+||+||.+.+...+..+++++|++|
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   88 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIG--SNVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   88 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSC--SSCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            34599999999999999999999988776 4555554  3344556666  78999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEecCCCCCH
Q 027949           93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNV  166 (216)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi  166 (216)
                      +|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+.   ...+++.....     ..+++++++||++|.|+
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi  165 (187)
T 1zj6_A           89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC---MTVAEISQFLKLTSIKDHQWHIQACCALTGEGL  165 (187)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC---CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC---CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCH
Confidence            9999999999999999988876642 247999999999998642   23344443332     23568999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027949          167 EEVFFSIARDIKQR  180 (216)
Q Consensus       167 ~~l~~~l~~~i~~~  180 (216)
                      +++|++|++.+...
T Consensus       166 ~~l~~~l~~~~~~~  179 (187)
T 1zj6_A          166 CQGLEWMMSRLKIR  179 (187)
T ss_dssp             HHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999877543

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.97  E-value=3.5e-30  Score=185.74  Aligned_cols=156  Identities=21%  Similarity=0.410  Sum_probs=122.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+|+|.+|+|||||++++.+..+.. +.++.+  .....+..++  +.+.+||+||++.+...+..+++++|++++|+
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            589999999999999999999887654 445544  3344455555  78999999999999988999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHH-----HHhCCeEEEEecCCCCCHHHH
Q 027949           96 DVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETSAKTNLNVEEV  169 (216)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l  169 (216)
                      |+++++++..+..|+..+... ...+.|+++|+||+|+.+..   ..++.....     ...+++++++||++|.|++++
T Consensus        76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  152 (164)
T 1r8s_A           76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEG  152 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC---CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC---CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHH
Confidence            999999999998888777553 23478999999999996521   222222211     123467999999999999999


Q ss_pred             HHHHHHHHHH
Q 027949          170 FFSIARDIKQ  179 (216)
Q Consensus       170 ~~~l~~~i~~  179 (216)
                      |++|.+.+.+
T Consensus       153 ~~~l~~~i~~  162 (164)
T 1r8s_A          153 LDWLSNQLRN  162 (164)
T ss_dssp             HHHHHHHC--
T ss_pred             HHHHHHHHhh
Confidence            9999988754

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.96  E-value=3e-29  Score=186.85  Aligned_cols=155  Identities=20%  Similarity=0.299  Sum_probs=120.8

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..++|+|+|.+|||||||++++.+..+. .+.++.+..  ...+.+++  +.+.+|||||++.+...+..+++.+|++|+
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   98 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence            3489999999999999999999988764 344554433  45667777  789999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH-----------------hCCeE
Q 027949           94 VYDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKRAVPTSKGQALADE-----------------YGIKF  155 (216)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~  155 (216)
                      |+|+++++++..+..|+..+... ...+.|+++|+||+|+.+   ....+++..++..                 .++++
T Consensus        99 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (198)
T 1f6b_A           99 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE---AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  175 (198)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT---CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc---cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence            99999999999999998887654 234799999999999854   3456666666542                 23689


Q ss_pred             EEEecCCCCCHHHHHHHHHHH
Q 027949          156 FETSAKTNLNVEEVFFSIARD  176 (216)
Q Consensus       156 ~~~Sa~~~~gi~~l~~~l~~~  176 (216)
                      +++||++|.|++++|++|.+.
T Consensus       176 ~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          176 FMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             EECBTTTTBSHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            999999999999999999764

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.96  E-value=8.8e-29  Score=183.17  Aligned_cols=155  Identities=21%  Similarity=0.294  Sum_probs=126.4

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..++|+|+|.+|||||||++++.+..+. .+.++.+.  ....+.+++  +.+.+||+||++.+...+..+++.+|++|+
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   96 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHP--TSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF   96 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSC--EEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCC--CeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence            3479999999999999999999998765 34455443  456677787  889999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH------------hCCeEEEEec
Q 027949           94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADE------------YGIKFFETSA  160 (216)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa  160 (216)
                      |+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+   ....+++.++...            .+++++++||
T Consensus        97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  173 (190)
T 1m2o_B           97 LVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN---AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV  173 (190)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT---CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred             EEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC---CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence            999999999999999888876532 24799999999999864   3445555555432            3468999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 027949          161 KTNLNVEEVFFSIARD  176 (216)
Q Consensus       161 ~~~~gi~~l~~~l~~~  176 (216)
                      ++|.|++++|++|.+.
T Consensus       174 ~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          174 VMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             TTTBSHHHHHHHHHTT
T ss_pred             CcCCCHHHHHHHHHhh
Confidence            9999999999999764

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.96  E-value=2.1e-29  Score=184.88  Aligned_cols=161  Identities=22%  Similarity=0.373  Sum_probs=125.3

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ...++|+|+|.+|||||||++++.+..+ ..+.++.+  .....+.+++  +.+.+||+||.+.+...+..+++.+|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIG--FNVETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTT--CCEEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            4569999999999999999999998776 34445554  3345556666  78999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH-----hCCeEEEEecCCCCCH
Q 027949           93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADE-----YGIKFFETSAKTNLNV  166 (216)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi  166 (216)
                      +|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.   ...+++......     .+++++++||++|.|+
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi  167 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA---LSASEVSKELNLVELKDRSWSIVASSAIKGEGI  167 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC---CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC---CCHHHHHHHhCcccccCCceEEEEccCCCCcCH
Confidence            9999999999999998888776543 357999999999998642   233333333321     2358999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 027949          167 EEVFFSIARDIKQRL  181 (216)
Q Consensus       167 ~~l~~~l~~~i~~~~  181 (216)
                      +++|++|.+.+.+++
T Consensus       168 ~~l~~~l~~~~~~~q  182 (183)
T 1moz_A          168 TEGLDWLIDVIKEEQ  182 (183)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999987653

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.96  E-value=2.4e-29  Score=184.76  Aligned_cols=160  Identities=22%  Similarity=0.394  Sum_probs=124.3

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ...++|+|+|.+|||||||++++.+..+. .+.++.+  .....+.+++  +.+.+||+||++.+...+..+++.+|+++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g--~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   88 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQG--FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI   88 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETT--EEEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCC--eEEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            45699999999999999999999987643 3445444  3445566666  78999999999999888899999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHH-----HHhCCeEEEEecCCCCCH
Q 027949           93 LVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETSAKTNLNV  166 (216)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi  166 (216)
                      +|||+++++++..+..|+..+... ...+.|+++|+||+|+.+..   ..++.....     ...+++++++||++|.|+
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  165 (181)
T 1fzq_A           89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA---PASEIAEGLNLHTIRDRVWQIQSCSALTGEGV  165 (181)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC---CHHHHHHHhCchhccCCceEEEEccCCCCCCH
Confidence            999999999999998888776543 23478999999999986532   222322221     123468999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027949          167 EEVFFSIARDIKQR  180 (216)
Q Consensus       167 ~~l~~~l~~~i~~~  180 (216)
                      +++|++|.+.+.++
T Consensus       166 ~~l~~~l~~~~~~~  179 (181)
T 1fzq_A          166 QDGMNWVCKNVNAK  179 (181)
T ss_dssp             HHHHHHHHHTC---
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999877543

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.96  E-value=8.8e-30  Score=188.85  Aligned_cols=159  Identities=21%  Similarity=0.390  Sum_probs=120.4

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      ....++|+|+|.+|+|||||++++++..+. .+.++.+  .....+..++  +.+.+||+||.+.+...+..+++++|++
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~i  100 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGL  100 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence            345699999999999999999999988765 3344444  4445566666  7899999999999999999999999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHH-----HHhCCeEEEEecCCCCC
Q 027949           92 LLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETSAKTNLN  165 (216)
Q Consensus        92 i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~g  165 (216)
                      |+|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+..   ..+++....     ...+++++++||++|.|
T Consensus       101 ilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~g  177 (192)
T 2b6h_A          101 IFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM---PVSELTDKLGLQHLRSRTWYVQATCATQGTG  177 (192)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC---CHHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC---CHHHHHHHhCcccccCCceEEEECcCCCcCC
Confidence            99999999999999988887775532 2478999999999986531   222222211     12345799999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027949          166 VEEVFFSIARDIK  178 (216)
Q Consensus       166 i~~l~~~l~~~i~  178 (216)
                      ++++|++|.+.+.
T Consensus       178 i~~l~~~l~~~i~  190 (192)
T 2b6h_A          178 LYDGLDWLSHELS  190 (192)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998764

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.96  E-value=1.6e-29  Score=188.01  Aligned_cols=169  Identities=20%  Similarity=0.234  Sum_probs=121.3

Q ss_pred             cccCCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEEC-CeEEEEEEEeCCCcccccccc---
Q 027949            6 ARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTIT---   81 (216)
Q Consensus         6 ~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~---   81 (216)
                      +......+..+||+|+|.+|||||||++++.+.... ....+...........+. +..+.+.+||++|++.|....   
T Consensus        11 ~~~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~   89 (196)
T 3llu_A           11 RENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSP-NETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDY   89 (196)
T ss_dssp             ---------CCEEEEEESTTSSHHHHHHHHHSCCCG-GGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCH
T ss_pred             CCCCcccCcceEEEEECCCCCCHHHHHHHHHhcCCC-cceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhc
Confidence            344556677899999999999999999988875332 222222222222222332 455789999999999987766   


Q ss_pred             ccccccccEEEEEEeCCCH--hHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC------CCccChHHHHHHHH----
Q 027949           82 TAYYRGAMGILLVYDVTDE--SSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES------KRAVPTSKGQALAD----  149 (216)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------~~~~~~~~~~~~~~----  149 (216)
                      ..+++++|++|+|||++++  +++..+..|+..+.... .+.|++||+||+|+.+.      .+.+.......++.    
T Consensus        90 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~  168 (196)
T 3llu_A           90 EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLE  168 (196)
T ss_dssp             HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhh
Confidence            7899999999999999997  67777777777765433 47999999999998542      12344455666777    


Q ss_pred             HhCCeEEEEecCCCCCHHHHHHHHHHHH
Q 027949          150 EYGIKFFETSAKTNLNVEEVFFSIARDI  177 (216)
Q Consensus       150 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  177 (216)
                      ..+++|+++||++ .|++++|.+|++.+
T Consensus       169 ~~~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          169 KLHLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             TSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             cCCcceEEEEech-hhHHHHHHHHHHHh
Confidence            6678999999999 99999999998865

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.96  E-value=9.3e-28  Score=191.86  Aligned_cols=164  Identities=31%  Similarity=0.575  Sum_probs=141.9

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..++|+|+|.+|+|||||++++.+..+...+.++.+. .....+..++..+.+.+||+||.+.+...+..+++.+|++|+
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~  232 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  232 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEE-EEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccc-eeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence            4589999999999999999999998887777666653 335567788888999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhCC-eEEEEec
Q 027949           94 VYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETSA  160 (216)
Q Consensus        94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa  160 (216)
                      |||++++.++..+. .|+..+..... +.|+++|+||+|+.+.           ...+..+++..++...++ +++++||
T Consensus       233 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  311 (332)
T 2wkq_A          233 CFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  311 (332)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence            99999999999987 58888877654 7999999999998543           245677888899999997 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q 027949          161 KTNLNVEEVFFSIARDIKQ  179 (216)
Q Consensus       161 ~~~~gi~~l~~~l~~~i~~  179 (216)
                      ++|.|++++|++|.+.+++
T Consensus       312 ~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          312 LTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             TTCTTHHHHHHHHHHHHHC
T ss_pred             CCCcCHHHHHHHHHHHHhc
Confidence            9999999999999988764

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.96  E-value=3.4e-29  Score=184.93  Aligned_cols=160  Identities=19%  Similarity=0.349  Sum_probs=126.6

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ...++|+|+|.+|+|||||++++.+..+.. +.++.+  .....+.+++  +.+.+|||||++.+...+..+++.+|++|
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG--VNLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT--CCEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc--eEEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            456999999999999999999998877653 444444  3344566666  78999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHH-----HHHhCCeEEEEecCCCCCH
Q 027949           93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQAL-----ADEYGIKFFETSAKTNLNV  166 (216)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi  166 (216)
                      +|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+..   ..++....     +...+++++++||++|.|+
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  171 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA---SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGL  171 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC---CHHHHHHHhChhhccCCceEEEEccCCCccCH
Confidence            9999999999999888887775532 2478999999999986532   22222221     1223468999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027949          167 EEVFFSIARDIKQR  180 (216)
Q Consensus       167 ~~l~~~l~~~i~~~  180 (216)
                      +++|++|.+.+.++
T Consensus       172 ~~l~~~l~~~i~~~  185 (189)
T 2x77_A          172 VEGMDWLVERLREQ  185 (189)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999988654

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.93  E-value=5.9e-31  Score=196.79  Aligned_cols=163  Identities=33%  Similarity=0.614  Sum_probs=135.1

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ...++|+|+|.+|+|||||+++|++..+...+.++.+.. ....+..++..+.+.+||+||++.+...+..+++++|++|
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            566999999999999999999999888766666655433 3445566777788899999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEEe
Q 027949           93 LVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETS  159 (216)
Q Consensus        93 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~S  159 (216)
                      +|||++++.++..+. .|+..+..... +.|+++|+||+|+.+..           .....+++..++...++ +++++|
T Consensus       107 lv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS  185 (204)
T 3th5_A          107 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  185 (204)
Confidence            999999999999887 68777766544 78999999999986532           13445667777888887 999999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q 027949          160 AKTNLNVEEVFFSIARDI  177 (216)
Q Consensus       160 a~~~~gi~~l~~~l~~~i  177 (216)
                      |++|.|++++|++|.+.+
T Consensus       186 A~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          186 ALTQRGLKTVFDEAIRAV  203 (204)
Confidence            999999999999998765

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.96  E-value=5.4e-29  Score=183.33  Aligned_cols=164  Identities=24%  Similarity=0.419  Sum_probs=120.7

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcC--CCCCccccceeeeEEEEEEEE---CCeEEEEEEEeCCCcccccccccccccccc
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDG--SFTTSFITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   89 (216)
                      .+||+|+|++|||||||+++|.+.  .+...+.++.+.+.....+..   ++..+.+.+||++|++.+..++..+++.++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            489999999999999999999985  344556667666665555443   234578999999999999988888999999


Q ss_pred             EEEEEEeCCCH-hHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccC---hHHHHHHHHHhCCe----EEEEecC
Q 027949           90 GILLVYDVTDE-SSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVP---TSKGQALADEYGIK----FFETSAK  161 (216)
Q Consensus        90 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa~  161 (216)
                      ++++|||++++ .++..+..|+..+.... .+.|+++|+||+|+.+. ....   .+....++..++++    ++++||+
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDE-KQRKACMSKITKELLNKRGFPAIRDYHFVNAT  159 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCH-HHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccc-hhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence            99999999997 57888889998887654 36899999999998542 1111   23345556566776    9999999


Q ss_pred             CCC-CHHHHHHHHHHHHHHH
Q 027949          162 TNL-NVEEVFFSIARDIKQR  180 (216)
Q Consensus       162 ~~~-gi~~l~~~l~~~i~~~  180 (216)
                      +|. +++++++.|.+.+.+.
T Consensus       160 ~~~~~~~~l~~~i~~~~~~~  179 (184)
T 2zej_A          160 EESDALAKLRKTIINESLNF  179 (184)
T ss_dssp             SCCHHHHHHHHHHHHHHHCC
T ss_pred             cCchhHHHHHHHHHHHHhcc
Confidence            996 9999999998877553

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.95  E-value=1.7e-27  Score=173.84  Aligned_cols=159  Identities=21%  Similarity=0.204  Sum_probs=120.6

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ...++|+|+|.+|+|||||+++|++..+...+.++.+.+.....+.+++  ..+.+|||||++.+...+..++..+|++|
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   83 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDIVI   83 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence            3458999999999999999999999888776666666666666777787  56789999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh-------C--CeEEEEecCCC
Q 027949           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEY-------G--IKFFETSAKTN  163 (216)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~~  163 (216)
                      +|+|++++...... .++..+.   ..+.|+++|+||+|+.+.    ..+.........       +  ++++++||++|
T Consensus        84 ~v~d~~~~~~~~~~-~~l~~~~---~~~~p~ilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  155 (178)
T 2lkc_A           84 LVVAADDGVMPQTV-EAINHAK---AANVPIIVAINKMDKPEA----NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTK  155 (178)
T ss_dssp             EEEETTCCCCHHHH-HHHHHHG---GGSCCEEEEEETTTSSCS----CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSS
T ss_pred             EEEECCCCCcHHHH-HHHHHHH---hCCCCEEEEEECccCCcC----CHHHHHHHHHhcCcChhHcCCcccEEEEecCCC
Confidence            99999884222221 1122222   236899999999998652    222333222222       2  48999999999


Q ss_pred             CCHHHHHHHHHHHHHHHh
Q 027949          164 LNVEEVFFSIARDIKQRL  181 (216)
Q Consensus       164 ~gi~~l~~~l~~~i~~~~  181 (216)
                      .|++++|++|.+.+....
T Consensus       156 ~gv~~l~~~l~~~~~~~~  173 (178)
T 2lkc_A          156 EGLDHLLEMILLVSEMEE  173 (178)
T ss_dssp             HHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHhhhhhc
Confidence            999999999999877653

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.95  E-value=1.9e-27  Score=172.10  Aligned_cols=153  Identities=20%  Similarity=0.249  Sum_probs=115.5

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc------ccccccc--
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------ITTAYYR--   86 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~--   86 (216)
                      .++|+|+|++|+|||||+++|.+..+.....++.+.+.....+.+++  ..+.+|||||...+..      +...+++  
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   80 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE   80 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence            48999999999999999999998776555556666666666677777  6899999999877642      3345554  


Q ss_pred             cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCH
Q 027949           87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV  166 (216)
Q Consensus        87 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  166 (216)
                      ++|++++|+|+++.+.   ...|+..+...   +.|+++|+||+|+.+.. .... +...++..++++++++||++|.|+
T Consensus        81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~-~~~~-~~~~~~~~~~~~~~~~SA~~~~~v  152 (165)
T 2wji_A           81 KPDLVVNIVDATALER---NLYLTLQLMEM---GANLLLALNKMDLAKSL-GIEI-DVDKLEKILGVKVVPLSAAKKMGI  152 (165)
T ss_dssp             CCSEEEEEEETTCHHH---HHHHHHHHHHT---TCCEEEEEECHHHHHHT-TCCC-CHHHHHHHHTSCEEECBGGGTBSH
T ss_pred             CCCEEEEEecCCchhH---hHHHHHHHHhc---CCCEEEEEEchHhcccc-Chhh-HHHHHHHHhCCCEEEEEcCCCCCH
Confidence            7999999999988653   34466555542   68999999999985322 2222 356778888999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027949          167 EEVFFSIARDI  177 (216)
Q Consensus       167 ~~l~~~l~~~i  177 (216)
                      +++|++|.+.+
T Consensus       153 ~~l~~~l~~~~  163 (165)
T 2wji_A          153 EELKKAISIAV  163 (165)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999998764

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.95  E-value=1.6e-28  Score=189.78  Aligned_cols=169  Identities=25%  Similarity=0.348  Sum_probs=123.5

Q ss_pred             ccCCCCCceEEEEEEcCC---------CCcHHHHHHHHHc---CCCCCccccce-eeeEEEEE--------------EEE
Q 027949            7 RARADYDYLIKLLLIGDS---------GVGKSCLLLRFSD---GSFTTSFITTI-GIDFKIRT--------------IEL   59 (216)
Q Consensus         7 ~~~~~~~~~~~i~v~G~~---------~~GKStli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~   59 (216)
                      +........+||+|+|.+         |||||||+++|.+   ..+...+.++. +.++....              ...
T Consensus        11 ~~~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~   90 (255)
T 3c5h_A           11 RENLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLE   90 (255)
T ss_dssp             CTTSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC----
T ss_pred             cCCCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeeccccccccccccccc
Confidence            344456677999999999         9999999999998   44544455543 22222111              124


Q ss_pred             CCeEEEEEEEe-----------------------CCCccccccccccccc---------------------cccEEEEEE
Q 027949           60 DGKRIKLQIWD-----------------------TAGQERFRTITTAYYR---------------------GAMGILLVY   95 (216)
Q Consensus        60 ~~~~~~~~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~~i~v~   95 (216)
                      ++..+.+.|||                       ++|++.+..++..+++                     ++|++|+||
T Consensus        91 ~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~  170 (255)
T 3c5h_A           91 DCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGI  170 (255)
T ss_dssp             -----CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEE
T ss_pred             CCcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEE
Confidence            56678999999                       6667777777777777                     799999999


Q ss_pred             eCCCH--hHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH-hCCeEEEEecCCCCCHHHHHH
Q 027949           96 DVTDE--SSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKRAVPTSKGQALADE-YGIKFFETSAKTNLNVEEVFF  171 (216)
Q Consensus        96 d~~~~--~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~  171 (216)
                      |++++  .++..+..|+..+... ...+.|++||+||+|+.+. ..  .+++..++.. .+++++++||++|.|++++|+
T Consensus       171 D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~-~~--v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~  247 (255)
T 3c5h_A          171 DVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVE-RY--IRDAHTFALSKKNLQVVETSARSNVNVDLAFS  247 (255)
T ss_dssp             ECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCH-HH--HHHHHHHHHTSSSCCEEECBTTTTBSHHHHHH
T ss_pred             ECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccccc-HH--HHHHHHHHHhcCCCeEEEEECCCCCCHHHHHH
Confidence            99998  9999999999888765 3347999999999998542 22  2566677765 478999999999999999999


Q ss_pred             HHHHHHH
Q 027949          172 SIARDIK  178 (216)
Q Consensus       172 ~l~~~i~  178 (216)
                      +|.+.+.
T Consensus       248 ~l~~~l~  254 (255)
T 3c5h_A          248 TLVQLID  254 (255)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9988763

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.95  E-value=8.2e-28  Score=180.92  Aligned_cols=161  Identities=16%  Similarity=0.245  Sum_probs=112.8

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCe-EEEEEEEeCCCcccccc-ccccccccccE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK-RIKLQIWDTAGQERFRT-ITTAYYRGAMG   90 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~-~~~~~~~~~d~   90 (216)
                      ...++|+|+|.+|+|||||+++|++..+...+.++ +.+..  .+.+++. .+.+.+|||||++.+.. ++..+++.+|+
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   81 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA   81 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEE--EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeE--EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence            34589999999999999999999998877655433 32332  3566543 47899999999998887 78888999999


Q ss_pred             EEEEEeCCCHh-HHHHHHHHHH-HHHHh--cCCCCcEEEEEeCCCCCCCCCcc-ChHHHHHHH-----------------
Q 027949           91 ILLVYDVTDES-SFNNIRNWIR-NIEQH--ASDNVNKILVGNKADMDESKRAV-PTSKGQALA-----------------  148 (216)
Q Consensus        91 ~i~v~d~~~~~-~~~~~~~~~~-~~~~~--~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~-----------------  148 (216)
                      +|+|||+++.. ++.....++. .+...  ...+.|+++|+||+|+.+..... ..+.+....                 
T Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~  161 (214)
T 2fh5_B           82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS  161 (214)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred             EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence            99999999854 4555555443 33331  23468999999999996532210 011111111                 


Q ss_pred             ---------------H-Hh--CCeEEEEecCCC------CCHHHHHHHHHHH
Q 027949          149 ---------------D-EY--GIKFFETSAKTN------LNVEEVFFSIARD  176 (216)
Q Consensus       149 ---------------~-~~--~~~~~~~Sa~~~------~gi~~l~~~l~~~  176 (216)
                                     . .+  +++|++|||++|      .|++++|+||.+.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                           1 11  568999999999      9999999999875

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.95  E-value=1e-26  Score=176.82  Aligned_cols=167  Identities=21%  Similarity=0.175  Sum_probs=119.8

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccc---------cccccc
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF---------RTITTA   83 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~   83 (216)
                      ...++|+|+|.+|+|||||+++|++..+.....+..+.+.....+..++  ..+.+|||||....         ...+..
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  104 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA  104 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence            4569999999999999999999999876533344444455555556666  78999999998321         111234


Q ss_pred             ccccccEEEEEEeCCCHhHHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccCh---HHHHHHHHHhC--CeEE
Q 027949           84 YYRGAMGILLVYDVTDESSFN--NIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPT---SKGQALADEYG--IKFF  156 (216)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~~~~--~~~~  156 (216)
                      ++..+|++|+|||++++.++.  ....|+..+.... .+.|+++|+||+|+.+. .....   .....++...+  ++++
T Consensus       105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  182 (228)
T 2qu8_A          105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNM-DSLSIDNKLLIKQILDNVKNPIKFS  182 (228)
T ss_dssp             HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC---CCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred             hhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCc-hhhHHHHHHHHHHHHHhcCCCceEE
Confidence            467889999999999987754  2234555554432 36899999999998653 23332   24566677776  8999


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHhhc
Q 027949          157 ETSAKTNLNVEEVFFSIARDIKQRLAD  183 (216)
Q Consensus       157 ~~Sa~~~~gi~~l~~~l~~~i~~~~~~  183 (216)
                      ++||++|.|++++|++|.+.+.+.+..
T Consensus       183 ~~SA~~g~gi~~l~~~l~~~i~~~~~~  209 (228)
T 2qu8_A          183 SFSTLTGVGVEQAKITACELLKNDQAE  209 (228)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             EEecccCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999876544

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.95  E-value=9.7e-28  Score=191.71  Aligned_cols=159  Identities=21%  Similarity=0.401  Sum_probs=119.9

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ...++|+|+|.+|+|||||+++|.+..+... .++.+  .....+...+  +.+.||||||++.+..++..+++.+|++|
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~--~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi  237 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI  237 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETT--EEEEEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccc--eEEEEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            3458999999999999999999998876533 24333  4445566666  78999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEecCCCCCH
Q 027949           93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNV  166 (216)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi  166 (216)
                      +|||++++.++..+..|+..+.... ..+.|++||+||+|+.+..   ..+++.....     ..+++++++||++|.|+
T Consensus       238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi  314 (329)
T 3o47_A          238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSLRHRNWYIQATCATSGDGL  314 (329)
T ss_dssp             EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC---CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTH
T ss_pred             EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc---CHHHHHHHhchhhhhcCCCEEEEEECCCCcCH
Confidence            9999999999999888776665432 3478999999999986532   2222222221     22457999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027949          167 EEVFFSIARDIKQ  179 (216)
Q Consensus       167 ~~l~~~l~~~i~~  179 (216)
                      +++|++|.+.+.+
T Consensus       315 ~el~~~l~~~l~~  327 (329)
T 3o47_A          315 YEGLDWLSNQLRN  327 (329)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988754

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.94  E-value=2.6e-26  Score=181.85  Aligned_cols=163  Identities=21%  Similarity=0.296  Sum_probs=125.8

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCC-ccccceeeeEEEEEEEECCeEEEEEEEeCCCcccc-----ccccccccccc
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-----RTITTAYYRGA   88 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~~~~   88 (216)
                      .+||+|+|.+|||||||++++++..... ...+..+.+.....+.+++ .+.+.+||+||++.+     ...+..+++++
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a   81 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQMV   81 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence            4899999999999999999998874321 1223334444555555544 478999999999888     67888889999


Q ss_pred             cEEEEEEeCCCHhHHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCC-Cc----cChHHHHHHHHHhC---CeEEEE
Q 027949           89 MGILLVYDVTDESSFNNIRNWIRNIEQHA--SDNVNKILVGNKADMDESK-RA----VPTSKGQALADEYG---IKFFET  158 (216)
Q Consensus        89 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~-~~----~~~~~~~~~~~~~~---~~~~~~  158 (216)
                      |++|+|||+++++++..+..|...+....  ..+.|+++|+||+|+.+.. +.    ...+++..++..++   ++++++
T Consensus        82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~t  161 (307)
T 3r7w_A           82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPT  161 (307)
T ss_dssp             SEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEEC
T ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEe
Confidence            99999999999999998877655443321  3479999999999986421 22    44577888888887   799999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHH
Q 027949          159 SAKTNLNVEEVFFSIARDIKQ  179 (216)
Q Consensus       159 Sa~~~~gi~~l~~~l~~~i~~  179 (216)
                      ||++ .++.++|..+++.+..
T Consensus       162 Sa~~-~~i~e~~~~iv~~li~  181 (307)
T 3r7w_A          162 SIWD-ESLYKAWSQIVCSLIP  181 (307)
T ss_dssp             CTTS-SHHHHHHHHHHHTTCS
T ss_pred             eecC-ChHHHHHHHHHHHHcC
Confidence            9999 8999999998875543

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.94  E-value=2.8e-26  Score=168.96  Aligned_cols=158  Identities=20%  Similarity=0.241  Sum_probs=123.3

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccc------cccccccc-
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR------TITTAYYR-   86 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~-   86 (216)
                      ..++|+|+|++|||||||+++|++..+.....++.+.+.....+.+++  ..+.+|||||...+.      .++..+++ 
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   83 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   83 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence            458999999999999999999998776555566666677777778877  789999999988764      23455554 


Q ss_pred             -cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCC
Q 027949           87 -GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN  165 (216)
Q Consensus        87 -~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  165 (216)
                       .+|++++|+|.++.   .....|+..+..   .+.|+++|+||+|+.+.. ... .....++..++++++++||++|.|
T Consensus        84 ~~~~~~i~v~d~~~~---~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~-~~~-~~~~~~~~~~~~~~~~~Sa~~~~~  155 (188)
T 2wjg_A           84 EKPDLVVNIVDATAL---ERNLYLTLQLME---MGANLLLALNKMDLAKSL-GIE-IDVDKLEKILGVKVVPLSAAKKMG  155 (188)
T ss_dssp             HCCSEEEEEEEGGGH---HHHHHHHHHHHT---TTCCEEEEEECHHHHHHT-TCC-CCHHHHHHHHTSCEEECBGGGTBS
T ss_pred             cCCCEEEEEecchhH---HHHHHHHHHHHh---cCCCEEEEEEhhhccccc-cch-HHHHHHHHHhCCCeEEEEecCCCC
Confidence             48999999998754   455566666554   378999999999985422 122 356777888899999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 027949          166 VEEVFFSIARDIKQRL  181 (216)
Q Consensus       166 i~~l~~~l~~~i~~~~  181 (216)
                      ++++|++|.+.+.+..
T Consensus       156 v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          156 IEELKKAISIAVKDKK  171 (188)
T ss_dssp             HHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            9999999998876543

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.94  E-value=1.4e-26  Score=168.68  Aligned_cols=154  Identities=21%  Similarity=0.227  Sum_probs=115.1

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccc--------ccccc
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTAYY   85 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~   85 (216)
                      .++|+|+|.+|+|||||+++|.+.... ....++.+.+.....+.+++  ..+.+|||||...+...        ...++
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   81 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEI   81 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence            379999999999999999999987643 23344555566677778887  46889999998643221        12357


Q ss_pred             ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCC
Q 027949           86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN  165 (216)
Q Consensus        86 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  165 (216)
                      +.+|++++|+|++++.++. ...|+..+......+.|+++|+||+|+.+....        ++...+++++++||++|.|
T Consensus        82 ~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~--------~~~~~~~~~~~~SA~~g~g  152 (172)
T 2gj8_A           82 EQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETLG--------MSEVNGHALIRLSARTGEG  152 (172)
T ss_dssp             HTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE--------EEEETTEEEEECCTTTCTT
T ss_pred             HhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchhh--------hhhccCCceEEEeCCCCCC
Confidence            8999999999999887765 346777776665557999999999998542111        1122457899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027949          166 VEEVFFSIARDIKQ  179 (216)
Q Consensus       166 i~~l~~~l~~~i~~  179 (216)
                      ++++|++|.+.+..
T Consensus       153 v~~l~~~l~~~~~~  166 (172)
T 2gj8_A          153 VDVLRNHLKQSMGF  166 (172)
T ss_dssp             HHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999887643

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.94  E-value=9e-27  Score=171.72  Aligned_cols=157  Identities=24%  Similarity=0.301  Sum_probs=114.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCC-----------ccccccccccc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG-----------QERFRTITTAY   84 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~   84 (216)
                      ++|+|+|.+|+|||||+++|++..+...+.++.+....  .+.+.    .+.+||+||           ++.+...+..+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~--~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII--EIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE--EEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeE--EEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            68999999999999999999999877666666554433  33333    578999999           55666666777


Q ss_pred             ccc-ccEEEEEEeCCCHhHHHHH-HHHHHH--------H-HHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC
Q 027949           85 YRG-AMGILLVYDVTDESSFNNI-RNWIRN--------I-EQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI  153 (216)
Q Consensus        85 ~~~-~d~~i~v~d~~~~~~~~~~-~~~~~~--------~-~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  153 (216)
                      ++. ++++++++++.+..++..+ ..|...        + ......+.|+++|+||+|+.+..    .+....++..++.
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~  151 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV----QEVINFLAEKFEV  151 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH----HHHHHHHHHHHTC
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH----HHHHHHHHHHhhh
Confidence            766 6666666666556666665 345431        1 12222478999999999986532    5567778888876


Q ss_pred             e-------EEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 027949          154 K-------FFETSAKTNLNVEEVFFSIARDIKQRLA  182 (216)
Q Consensus       154 ~-------~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  182 (216)
                      +       ++++||++|.|++++|++|.+.+.+...
T Consensus       152 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~  187 (190)
T 2cxx_A          152 PLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG  187 (190)
T ss_dssp             CGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred             hhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence            4       7999999999999999999998876543

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.94  E-value=7.7e-26  Score=174.89  Aligned_cols=155  Identities=19%  Similarity=0.184  Sum_probs=121.8

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccc------cccc--
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT------TAYY--   85 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~------~~~~--   85 (216)
                      ..++|+|+|.+|+|||||+++|++..+.....++.+.+.....+...+  ..+.+||+||...+...+      ..++  
T Consensus         4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~   81 (258)
T 3a1s_A            4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLLK   81 (258)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence            458999999999999999999999877655666777777777777766  789999999987765432      4555  


Q ss_pred             ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCC
Q 027949           86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN  165 (216)
Q Consensus        86 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  165 (216)
                      ..+|++++|+|+++.+...   .|...+..   .+.|+++|+||+|+.+.. ... .....++..++++++++||++|.|
T Consensus        82 ~~~d~ii~V~D~t~~~~~~---~~~~~l~~---~~~pvilv~NK~Dl~~~~-~i~-~~~~~l~~~lg~~vi~~SA~~g~g  153 (258)
T 3a1s_A           82 GDADLVILVADSVNPEQSL---YLLLEILE---MEKKVILAMTAIDEAKKT-GMK-IDRYELQKHLGIPVVFTSSVTGEG  153 (258)
T ss_dssp             SCCSEEEEEEETTSCHHHH---HHHHHHHT---TTCCEEEEEECHHHHHHT-TCC-BCHHHHHHHHCSCEEECCTTTCTT
T ss_pred             cCCCEEEEEeCCCchhhHH---HHHHHHHh---cCCCEEEEEECcCCCCcc-chH-HHHHHHHHHcCCCEEEEEeeCCcC
Confidence            5799999999999876433   34444443   378999999999985422 222 236778888999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027949          166 VEEVFFSIARDIK  178 (216)
Q Consensus       166 i~~l~~~l~~~i~  178 (216)
                      ++++|++|.+.+.
T Consensus       154 i~el~~~i~~~~~  166 (258)
T 3a1s_A          154 LEELKEKIVEYAQ  166 (258)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988653

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.94  E-value=2.5e-26  Score=164.87  Aligned_cols=150  Identities=21%  Similarity=0.187  Sum_probs=106.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCcccc-------cccccccccc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-------RTITTAYYRG   87 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~   87 (216)
                      .+|+|+|.+|+|||||++++.+..+. ....++.+.+.....+..++  ..+.+||+||...+       ...+..+++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            68999999999999999999988754 23344455556666777777  47889999998763       3345567889


Q ss_pred             ccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEecCCCCCH
Q 027949           88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNV  166 (216)
Q Consensus        88 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi  166 (216)
                      +|++|+|+|++++.+...  .++..+...  .+.|+++|+||+|+.+.     .+++..++ ..++ +++++||++|.|+
T Consensus        80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~-----~~~~~~~~-~~~~~~~~~~Sa~~~~gv  149 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKH-----ELYLGPLY-GLGFGDPIPTSSEHARGL  149 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGG-----GGGCGGGG-GGSSCSCEECBTTTTBSH
T ss_pred             CCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccc-----hHhHHHHH-hCCCCCeEEEecccCCCh
Confidence            999999999988533222  222222222  26899999999998653     12333344 5676 8999999999999


Q ss_pred             HHHHHHHHHHH
Q 027949          167 EEVFFSIARDI  177 (216)
Q Consensus       167 ~~l~~~l~~~i  177 (216)
                      +++|++|.+.+
T Consensus       150 ~~l~~~l~~~l  160 (161)
T 2dyk_A          150 EELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhC
Confidence            99999998764

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.93  E-value=2.6e-26  Score=170.10  Aligned_cols=159  Identities=16%  Similarity=0.186  Sum_probs=106.4

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCC----------cccccccc
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QERFRTIT   81 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~   81 (216)
                      ....++|+|+|.+|+|||||+++|++..+.....++.+.......+..++   .+.+|||||          .+.+..++
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~   96 (195)
T 1svi_A           20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI   96 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence            44569999999999999999999998875544444444334334444444   589999999          66666667


Q ss_pred             ccccccc---cEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc-ChHHHHH-HHHHhCCeEE
Q 027949           82 TAYYRGA---MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAV-PTSKGQA-LADEYGIKFF  156 (216)
Q Consensus        82 ~~~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~-~~~~~~~~~~  156 (216)
                      ..+++.+   |++++|+|++++.++.... ++..+..   .+.|+++|+||+|+.+..... ..+++.. +....+++++
T Consensus        97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (195)
T 1svi_A           97 ETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELI  172 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEE
T ss_pred             HHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceE
Confidence            7777766   9999999999876665532 2222222   368999999999986522110 1122222 2223357999


Q ss_pred             EEecCCCCCHHHHHHHHHHHH
Q 027949          157 ETSAKTNLNVEEVFFSIARDI  177 (216)
Q Consensus       157 ~~Sa~~~~gi~~l~~~l~~~i  177 (216)
                      ++||++|.|++++|++|.+.+
T Consensus       173 ~~Sa~~~~gv~~l~~~l~~~l  193 (195)
T 1svi_A          173 LFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEccCCCCHHHHHHHHHHHh
Confidence            999999999999999998875

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.93  E-value=3.3e-26  Score=176.72  Aligned_cols=151  Identities=16%  Similarity=0.145  Sum_probs=119.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc----------cccccc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT----------ITTAYY   85 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~   85 (216)
                      .+|+|+|.+|||||||+|+|++........++.+.+.....+.+++  ..+.+|||||...+..          +...++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            4899999999999999999999876666677888888888888888  5889999999876653          345566


Q ss_pred             --ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCC
Q 027949           86 --RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN  163 (216)
Q Consensus        86 --~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (216)
                        +.+|++|+|+|+++.+....+..++   .   ..+.|+++|+||+|+.+...  .......+...++++++++||++|
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~~~l---~---~~~~pvilv~NK~Dl~~~~~--~~~~~~~l~~~lg~~vi~~SA~~g  151 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLTSQL---F---ELGKPVVVALNMMDIAEHRG--ISIDTEKLESLLGCSVIPIQAHKN  151 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHHHHH---T---TSCSCEEEEEECHHHHHHTT--CEECHHHHHHHHCSCEEECBGGGT
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHHHHH---H---HcCCCEEEEEEChhcCCcCC--cHHHHHHHHHHcCCCEEEEECCCC
Confidence              7899999999999876554443332   2   23789999999999854221  112345577888999999999999


Q ss_pred             CCHHHHHHHHHHH
Q 027949          164 LNVEEVFFSIARD  176 (216)
Q Consensus       164 ~gi~~l~~~l~~~  176 (216)
                      .|++++|++|.+.
T Consensus       152 ~gi~el~~~i~~~  164 (256)
T 3iby_A          152 IGIPALQQSLLHC  164 (256)
T ss_dssp             BSHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHhh
Confidence            9999999999876

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.93  E-value=1e-25  Score=166.66  Aligned_cols=159  Identities=20%  Similarity=0.256  Sum_probs=111.9

Q ss_pred             CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCC----------ccccccc
Q 027949           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QERFRTI   80 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~   80 (216)
                      .....++|+|+|.+|+|||||+++|++..+. ...++.+..........+.   .+.+||+||          .+.+..+
T Consensus        19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~   94 (195)
T 3pqc_A           19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRL   94 (195)
T ss_dssp             CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHH
Confidence            3456689999999999999999999998743 2333333333333333443   577999999          5556666


Q ss_pred             cccccccc---cEEEEEEeCCCHhHH--HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-CccChHHHHHHHHHhC-C
Q 027949           81 TTAYYRGA---MGILLVYDVTDESSF--NNIRNWIRNIEQHASDNVNKILVGNKADMDESK-RAVPTSKGQALADEYG-I  153 (216)
Q Consensus        81 ~~~~~~~~---d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~  153 (216)
                      +..+++.+   |++++|+|+++....  ..+..|+...      +.|+++|+||+|+.+.. .....+.+..++...+ +
T Consensus        95 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  168 (195)
T 3pqc_A           95 VEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEY  168 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCS
T ss_pred             HHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCC
Confidence            66676665   999999999875332  3333343322      68999999999986422 2233345555555544 7


Q ss_pred             eEEEEecCCCCCHHHHHHHHHHHHHH
Q 027949          154 KFFETSAKTNLNVEEVFFSIARDIKQ  179 (216)
Q Consensus       154 ~~~~~Sa~~~~gi~~l~~~l~~~i~~  179 (216)
                      +++++||++|.|++++|++|.+.+.+
T Consensus       169 ~~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          169 TIIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             ceEEEecCCCCCHHHHHHHHHHHhhc
Confidence            99999999999999999999988753

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.93  E-value=1.2e-24  Score=172.35  Aligned_cols=160  Identities=18%  Similarity=0.102  Sum_probs=125.3

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCC-ccccceeeeEEEEEEEEC-CeEEEEEEEeCCCccccc----------cc
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFR----------TI   80 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~----------~~   80 (216)
                      ...-.|+|+|.+|||||||+|+|++..+.. ...+..+.......+..+ +  ..+.||||||.....          ..
T Consensus         8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~--~~i~lvDTPG~~~~~~~~~l~~~~~~~   85 (308)
T 3iev_A            8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE--AQIIFLDTPGIYEPKKSDVLGHSMVEI   85 (308)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT--EEEEEEECCCCCCCCTTCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC--CeEEEEECcCCCccccchhHHHHHHHH
Confidence            455889999999999999999999988753 334444445555555665 5  789999999985543          45


Q ss_pred             cccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC--CeEEEE
Q 027949           81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG--IKFFET  158 (216)
Q Consensus        81 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~  158 (216)
                      ...+++.+|++++|+|++++.+......|+..+...   +.|+++|+||+|+.. ......+....+...++  .+++++
T Consensus        86 ~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---~~pvilV~NK~Dl~~-~~~~~~~~~~~l~~~~~~~~~i~~v  161 (308)
T 3iev_A           86 AKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---NKPVIVVINKIDKIG-PAKNVLPLIDEIHKKHPELTEIVPI  161 (308)
T ss_dssp             HHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---CCCEEEEEECGGGSS-SGGGGHHHHHHHHHHCTTCCCEEEC
T ss_pred             HHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---CCCEEEEEECccCCC-CHHHHHHHHHHHHHhccCCCeEEEE
Confidence            566778999999999999987777776667766653   689999999999863 23445566677777775  789999


Q ss_pred             ecCCCCCHHHHHHHHHHHHH
Q 027949          159 SAKTNLNVEEVFFSIARDIK  178 (216)
Q Consensus       159 Sa~~~~gi~~l~~~l~~~i~  178 (216)
                      ||++|.|++++|++|.+.+.
T Consensus       162 SA~~g~gv~~L~~~l~~~l~  181 (308)
T 3iev_A          162 SALKGANLDELVKTILKYLP  181 (308)
T ss_dssp             BTTTTBSHHHHHHHHHHHSC
T ss_pred             eCCCCCCHHHHHHHHHHhCc
Confidence            99999999999999998774

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.93  E-value=8.7e-26  Score=175.63  Aligned_cols=153  Identities=18%  Similarity=0.195  Sum_probs=114.6

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccc------cccccccc-
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR------TITTAYYR-   86 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~-   86 (216)
                      +.++|+++|.+|||||||+++|++........++.+.+.....+  +. ...+.+|||||...+.      .+...++. 
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~--~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLV--KK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEEC--TT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEE--ec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            34899999999999999999999876544445555544444443  33 4678999999988765      34455554 


Q ss_pred             -cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCC
Q 027949           87 -GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN  165 (216)
Q Consensus        87 -~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  165 (216)
                       .+|++|+|+|+++.+..   ..|...+..   .+.|+++|+||+|+.... ... .....++..++++++++||++|.|
T Consensus        79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~-~~~-~~~~~l~~~lg~~vi~~SA~~g~g  150 (272)
T 3b1v_A           79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQ-GKK-INVDKLSYHLGVPVVATSALKQTG  150 (272)
T ss_dssp             TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHT-TCC-CCHHHHHHHHTSCEEECBTTTTBS
T ss_pred             CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcC-CcH-HHHHHHHHHcCCCEEEEEccCCCC
Confidence             69999999999886543   345444544   378999999999985322 122 345677888899999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027949          166 VEEVFFSIARDI  177 (216)
Q Consensus       166 i~~l~~~l~~~i  177 (216)
                      ++++|++|.+.+
T Consensus       151 i~el~~~i~~~~  162 (272)
T 3b1v_A          151 VDQVVKKAAHTT  162 (272)
T ss_dssp             HHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHH
Confidence            999999998754

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.93  E-value=7.8e-26  Score=176.40  Aligned_cols=154  Identities=16%  Similarity=0.173  Sum_probs=119.1

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccc----------cccc
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI----------TTAY   84 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------~~~~   84 (216)
                      .++|+|+|.+|+|||||+|+|++..+.....++.+.+.....+...+  ..+.+|||||...+...          ...+
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            48999999999999999999999887666677777777777887776  56789999998766521          2223


Q ss_pred             c--ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCC
Q 027949           85 Y--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT  162 (216)
Q Consensus        85 ~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (216)
                      +  +.+|++|+|+|+++.+....+..++.   ..   +.|+++|+||+|+.+...  .......+...++++++++||++
T Consensus        81 ~~~~~~d~ii~VvD~~~~~~~~~~~~~l~---~~---~~p~ivv~NK~Dl~~~~~--~~~~~~~l~~~lg~~~i~~SA~~  152 (274)
T 3i8s_A           81 ILSGDADLLINVVDASNLERNLYLTLQLL---EL---GIPCIVALNMLDIAEKQN--IRIEIDALSARLGCPVIPLVSTR  152 (274)
T ss_dssp             HHHTCCSEEEEEEEGGGHHHHHHHHHHHH---HH---TCCEEEEEECHHHHHHTT--EEECHHHHHHHHTSCEEECCCGG
T ss_pred             HhhcCCCEEEEEecCCChHHHHHHHHHHH---hc---CCCEEEEEECccchhhhh--HHHHHHHHHHhcCCCEEEEEcCC
Confidence            2  68999999999998765544444433   33   689999999999854221  12235667788899999999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 027949          163 NLNVEEVFFSIARDIK  178 (216)
Q Consensus       163 ~~gi~~l~~~l~~~i~  178 (216)
                      |.|++++|++|.+.+.
T Consensus       153 g~gi~el~~~i~~~~~  168 (274)
T 3i8s_A          153 GRGIEALKLAIDRYKA  168 (274)
T ss_dssp             GHHHHHHHHHHHTCCC
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999877654

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.92  E-value=1.7e-26  Score=182.01  Aligned_cols=160  Identities=19%  Similarity=0.223  Sum_probs=119.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCC---ccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc---ccccccccccE
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTT---SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT---ITTAYYRGAMG   90 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~   90 (216)
                      ||+++|..|||||||++++.++....   ...+|.+.+...  +  + ..+++.||||+|+++|..   .+..+++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            68999999999999999988664432   234555554432  2  2 237899999999999964   35788999999


Q ss_pred             EEEEEeCCCH--hHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC------CccChHHHHHHHHH----hCCeEEEE
Q 027949           91 ILLVYDVTDE--SSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK------RAVPTSKGQALADE----YGIKFFET  158 (216)
Q Consensus        91 ~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------~~~~~~~~~~~~~~----~~~~~~~~  158 (216)
                      +|+|||+++.  +.......|+..+.... ++.|+++|+||+|+.++.      +.+..+++++++..    +++.|++|
T Consensus        76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT  154 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNLAMIIEYAYKVN-PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT  154 (331)
T ss_dssp             EEEECCCSSCTTHHHHHHHHHHHHHHHHC-TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHHhhcC-CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence            9999999987  33444444455554443 479999999999996532      23555666677775    67899999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHhhc
Q 027949          159 SAKTNLNVEEVFFSIARDIKQRLAD  183 (216)
Q Consensus       159 Sa~~~~gi~~l~~~l~~~i~~~~~~  183 (216)
                      ||++ .++.+.|..|++.++++...
T Consensus       155 SAkd-~nV~eAFs~iv~~li~~~~~  178 (331)
T 3r7w_B          155 SIFD-HSIYEAFSRIVQKLIPELSF  178 (331)
T ss_dssp             CSSS-SHHHHHHHHHHTTSSTTHHH
T ss_pred             ccCC-CcHHHHHHHHHHHHHhhHHH
Confidence            9998 58999999999877665444

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.92  E-value=7.5e-25  Score=170.68  Aligned_cols=157  Identities=21%  Similarity=0.173  Sum_probs=122.5

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc------cccccc--c
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------ITTAYY--R   86 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--~   86 (216)
                      .++|+|+|++|||||||+++|++..+.....++.+.+.....+.+++  ..+.+||+||...+..      ....++  .
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   80 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILDG   80 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence            48999999999999999999999887666777777788888888888  5689999999877655      445555  6


Q ss_pred             cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCH
Q 027949           87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV  166 (216)
Q Consensus        87 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  166 (216)
                      .+|++++|+|+++.+   ....|...+....  ..|+++|+||+|+.+... ... ....+...++++++++||++|.|+
T Consensus        81 ~~d~vi~v~D~~~~~---~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~-~~~-~~~~l~~~lg~~~~~~Sa~~g~gi  153 (271)
T 3k53_A           81 NADVIVDIVDSTCLM---RNLFLTLELFEME--VKNIILVLNKFDLLKKKG-AKI-DIKKMRKELGVPVIPTNAKKGEGV  153 (271)
T ss_dssp             CCSEEEEEEEGGGHH---HHHHHHHHHHHTT--CCSEEEEEECHHHHHHHT-CCC-CHHHHHHHHSSCEEECBGGGTBTH
T ss_pred             CCcEEEEEecCCcch---hhHHHHHHHHhcC--CCCEEEEEEChhcCcccc-cHH-HHHHHHHHcCCcEEEEEeCCCCCH
Confidence            799999999998864   2333444444331  289999999999753221 111 266778888999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027949          167 EEVFFSIARDIKQR  180 (216)
Q Consensus       167 ~~l~~~l~~~i~~~  180 (216)
                      +++|++|.+.+...
T Consensus       154 ~~l~~~i~~~~~~~  167 (271)
T 3k53_A          154 EELKRMIALMAEGK  167 (271)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999887543

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.92  E-value=1.2e-25  Score=190.59  Aligned_cols=165  Identities=24%  Similarity=0.301  Sum_probs=121.9

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEE------EEE--CCeEEEEEEEeCCCcccccccccc
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRT------IEL--DGKRIKLQIWDTAGQERFRTITTA   83 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~i~D~~G~~~~~~~~~~   83 (216)
                      ....+||+|+|.+|||||||++++++..+...+.++.+.+.....      +..  ++..+.+.+||+||++.+......
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~  117 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF  117 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence            456799999999999999999999999887777777776555431      112  233478999999999999999999


Q ss_pred             ccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCC
Q 027949           84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN  163 (216)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (216)
                      +++.+|++|+|+|+++.   ..+..|+..+..... +.|+++|+||+|+.+ ...+..+....++...+++++++||++|
T Consensus       118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-~~pvilV~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~vSA~~g  192 (535)
T 3dpu_A          118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-KSPVIVVMNKIDENP-SYNIEQKKINERFPAIENRFHRISCKNG  192 (535)
T ss_dssp             HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-SCCEEEEECCTTTCT-TCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred             HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-CCCEEEEEECCCccc-ccccCHHHHHHHHHhcCCceEEEecCcc
Confidence            99999999999999766   445667777777654 689999999999965 3455677788888888999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHh
Q 027949          164 LNVEEVFFSIARDIKQRL  181 (216)
Q Consensus       164 ~gi~~l~~~l~~~i~~~~  181 (216)
                      .|+++++.+|.+.+.+..
T Consensus       193 ~gi~eL~~~l~~~~~~~~  210 (535)
T 3dpu_A          193 DGVESIAKSLKSAVLHPD  210 (535)
T ss_dssp             --CTTHHHHHHHHHTCTT
T ss_pred             cCHHHHHHHHHHHHhccc
Confidence            999999999999886643

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.91  E-value=1.4e-24  Score=164.17  Aligned_cols=164  Identities=13%  Similarity=0.064  Sum_probs=108.1

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCC--CCccccceeeeEEEEEEEECCeEEEEEEEeCCCc----------ccccc
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSF--TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ----------ERFRT   79 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~   79 (216)
                      ....++|+|+|.+|+|||||+++|++...  .....++.+.......+.. .....+.||||||.          +.+..
T Consensus        26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~  104 (223)
T 4dhe_A           26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGP-AAEPVAHLVDLPGYGYAEVPGAAKAHWEQ  104 (223)
T ss_dssp             CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESC-TTSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecC-CCCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence            34568999999999999999999999873  2223333333333333321 22267899999994          33444


Q ss_pred             cccccccc---ccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cChHHHHHHHHH-----
Q 027949           80 ITTAYYRG---AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA-VPTSKGQALADE-----  150 (216)
Q Consensus        80 ~~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~-----  150 (216)
                      +...+++.   +|++|+|+|++++.+. ....++..+..   .+.|+++|+||+|+.+.... ...+........     
T Consensus       105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~  180 (223)
T 4dhe_A          105 LLSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAG  180 (223)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcc
Confidence            55555555   7889999999875332 22234444443   36899999999998642111 011222223333     


Q ss_pred             --hCCeEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027949          151 --YGIKFFETSAKTNLNVEEVFFSIARDIKQR  180 (216)
Q Consensus       151 --~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  180 (216)
                        .+++++++||++|.|++++|++|.+.+...
T Consensus       181 ~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~  212 (223)
T 4dhe_A          181 YAGKLTVQLFSALKRTGLDDAHALIESWLRPA  212 (223)
T ss_dssp             CCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred             cCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence              347899999999999999999999988654

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.91  E-value=3.8e-23  Score=166.95  Aligned_cols=163  Identities=16%  Similarity=0.172  Sum_probs=123.0

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc---------cccc
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT---------ITTA   83 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~   83 (216)
                      ...++|+|+|.+|+|||||+++|.+........+..+.......+...+  ..+.+|||||......         ....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            3458999999999999999999998775433334444455555555565  6789999999754221         1123


Q ss_pred             ccccccEEEEEEeCCCHh--HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecC
Q 027949           84 YYRGAMGILLVYDVTDES--SFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK  161 (216)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (216)
                      +...+|++++|+|++++.  ++.....|+..+..... +.|+++|+||+|+.+..   ..+....++...+++++++||+
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~iSA~  318 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEE---NIKRLEKFVKEKGLNPIKISAL  318 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHH---HHHHHHHHHHHTTCCCEECBTT
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChH---HHHHHHHHHHhcCCCeEEEeCC
Confidence            445699999999998876  66777778887776554 78999999999985421   2244556666778999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHh
Q 027949          162 TNLNVEEVFFSIARDIKQRL  181 (216)
Q Consensus       162 ~~~gi~~l~~~l~~~i~~~~  181 (216)
                      +|+|+++++++|.+.+....
T Consensus       319 ~g~gi~~l~~~i~~~l~~~~  338 (357)
T 2e87_A          319 KGTGIDLVKEEIIKTLRPLA  338 (357)
T ss_dssp             TTBTHHHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHHHH
Confidence            99999999999999886653

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.91  E-value=1.6e-23  Score=174.16  Aligned_cols=156  Identities=19%  Similarity=0.152  Sum_probs=98.8

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCC-CCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccc--------cccc
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT--------TAYY   85 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~~   85 (216)
                      .++|+|+|.+|+|||||+|+|++.+. .....++.+.+.....+.+++  +.+.+|||||...+...+        ..++
T Consensus       233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~  310 (476)
T 3gee_A          233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM  310 (476)
T ss_dssp             CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence            48999999999999999999998764 244556666677777788888  789999999987655433        4467


Q ss_pred             ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCC
Q 027949           86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN  165 (216)
Q Consensus        86 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  165 (216)
                      +.+|++++|+|++++.++..+..+...+....  +.|+++|+||+|+.+... .   ....+......+++++||++|.|
T Consensus       311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~-~---~~~~l~~~~~~~~i~vSAktg~G  384 (476)
T 3gee_A          311 AEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANAD-A---LIRAIADGTGTEVIGISALNGDG  384 (476)
T ss_dssp             SSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTH-H---HHHHHHHHHTSCEEECBTTTTBS
T ss_pred             ccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccc-h---hHHHHHhcCCCceEEEEECCCCC
Confidence            89999999999999877653333332222222  689999999999865322 1   12333333237899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027949          166 VEEVFFSIARDIK  178 (216)
Q Consensus       166 i~~l~~~l~~~i~  178 (216)
                      +++++++|.+.+.
T Consensus       385 I~eL~~~i~~~~~  397 (476)
T 3gee_A          385 IDTLKQHMGDLVK  397 (476)
T ss_dssp             HHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998875

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.90  E-value=7.7e-24  Score=175.23  Aligned_cols=162  Identities=17%  Similarity=0.139  Sum_probs=114.4

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCcc----------cccccc
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----------RFRTIT   81 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~   81 (216)
                      +..++|+|+|.+|+|||||+|+|++.... ....++.+.+.....+.+++  ..+.||||||+.          .|....
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT--EEEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC--eEEEEEECCCcCcCccccchHHHHHHHH
Confidence            45699999999999999999999988754 34455666666666777887  468999999973          333322


Q ss_pred             c-cccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHH-HHHHH----HhCCeE
Q 027949           82 T-AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKG-QALAD----EYGIKF  155 (216)
Q Consensus        82 ~-~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~~----~~~~~~  155 (216)
                      . .+++.+|++++|+|++++.++... .|+..+..   .+.|+++|+||+|+.+... ...++. ..+..    ..++++
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~-~~~~~~~~~~~~~l~~~~~~~~  325 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDE-STMKEFEENIRDHFQFLDYAPI  325 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCT-THHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcch-HHHHHHHHHHHHhcccCCCCCE
Confidence            2 367889999999999998776664 45555543   3789999999999865322 222222 22222    235799


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHh
Q 027949          156 FETSAKTNLNVEEVFFSIARDIKQRL  181 (216)
Q Consensus       156 ~~~Sa~~~~gi~~l~~~l~~~i~~~~  181 (216)
                      +++||++|.|++++|+++.+.+.+..
T Consensus       326 ~~~SA~tg~~v~~l~~~i~~~~~~~~  351 (436)
T 2hjg_A          326 LFMSALTKKRIHTLMPAIIKASENHS  351 (436)
T ss_dssp             EECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred             EEEecccCCCHHHHHHHHHHHHHHhh
Confidence            99999999999999999998887643

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.90  E-value=2.8e-23  Score=163.76  Aligned_cols=154  Identities=18%  Similarity=0.132  Sum_probs=108.7

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCC-ccccceeeeEEEEEEEECCeEEEEEEEeCCCccc--------cccccccc
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTAY   84 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~   84 (216)
                      ...+|+|+|.+|+|||||+|+|++..+.. ...+.++.......+..++  ..+.+|||||...        +......+
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~~~~~~~   83 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEA   83 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHHHHHHHH
Confidence            34689999999999999999999987752 3333334344334445555  7899999999765        33445667


Q ss_pred             cccccEEEEEEeCCCHhHHHHHHHHH-HHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH-hC-CeEEEEecC
Q 027949           85 YRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADE-YG-IKFFETSAK  161 (216)
Q Consensus        85 ~~~~d~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~  161 (216)
                      ++.+|++++|+|++++.+..  ..|+ ..+.... .+.|+++|+||+|+.+....     ....... .+ .+++++||+
T Consensus        84 l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~~~iSA~  155 (301)
T 1wf3_A           84 LADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEE-----AMKAYHELLPEAEPRMLSAL  155 (301)
T ss_dssp             TSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHH-----HHHHHHHTSTTSEEEECCTT
T ss_pred             HhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHH-----HHHHHHHhcCcCcEEEEeCC
Confidence            88999999999998764333  2333 3444332 36899999999998642210     1222222 23 579999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 027949          162 TNLNVEEVFFSIARDI  177 (216)
Q Consensus       162 ~~~gi~~l~~~l~~~i  177 (216)
                      +|.|+++++++|.+.+
T Consensus       156 ~g~gv~~l~~~l~~~l  171 (301)
T 1wf3_A          156 DERQVAELKADLLALM  171 (301)
T ss_dssp             CHHHHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHHhc
Confidence            9999999999998765

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.89  E-value=3.3e-23  Score=172.34  Aligned_cols=164  Identities=16%  Similarity=0.135  Sum_probs=117.7

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCC-CCccccceeeeEEEEEEEECCeEEEEEEEeCCC----------ccccccc
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QERFRTI   80 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~   80 (216)
                      ....++|+++|.+|+|||||+++|++... .....++.+.+.....+..++  ..+.||||||          ++.+...
T Consensus       192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~  269 (456)
T 4dcu_A          192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVL  269 (456)
T ss_dssp             CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT--EEEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred             ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC--ceEEEEECCCCCcCcccchHHHHHHHH
Confidence            34569999999999999999999997753 334445556566566777777  4789999999          4555554


Q ss_pred             cc-cccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh-----CCe
Q 027949           81 TT-AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEY-----GIK  154 (216)
Q Consensus        81 ~~-~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~  154 (216)
                      .. .+++.+|++|+|+|+++... .....|...+..   .+.|+++|+||+|+.+. .....++..+.+...     +++
T Consensus       270 ~~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~  344 (456)
T 4dcu_A          270 RALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AGKAVVIVVNKWDAVDK-DESTMKEFEENIRDHFQFLDYAP  344 (456)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSCC-CSSHHHHHHHHHHHHCGGGTTSC
T ss_pred             HHHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEEEEEChhcCCC-chHHHHHHHHHHHHhcccCCCCC
Confidence            44 36788999999999987543 222344444443   36899999999998653 334445555555544     479


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 027949          155 FFETSAKTNLNVEEVFFSIARDIKQRLA  182 (216)
Q Consensus       155 ~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  182 (216)
                      ++++||++|.|++++|++|.+.+.+...
T Consensus       345 ~~~~SA~~g~gv~~l~~~i~~~~~~~~~  372 (456)
T 4dcu_A          345 ILFMSALTKKRIHTLMPAIIKASENHSL  372 (456)
T ss_dssp             EEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred             EEEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999998876543

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.89  E-value=9.9e-24  Score=168.71  Aligned_cols=158  Identities=20%  Similarity=0.248  Sum_probs=120.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccc----cccccccccc---cc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTAYYR---GA   88 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~~~---~~   88 (216)
                      .+|+|+|.+|||||||+++|++........+..+.......+.+++. ..+.+||+||..+    +..+...|++   .+
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~  237 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT  237 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence            36889999999999999999987654333344444555556666542 4789999999643    3445555655   49


Q ss_pred             cEEEEEEeCCC---HhHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC--CeEEEEecC
Q 027949           89 MGILLVYDVTD---ESSFNNIRNWIRNIEQHAS--DNVNKILVGNKADMDESKRAVPTSKGQALADEYG--IKFFETSAK  161 (216)
Q Consensus        89 d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~  161 (216)
                      +++|+|+|+++   .+++..+..|+..+..+..  ...|+++|+||+|+.+.     .+....+...+.  ++++++||+
T Consensus       238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~-----~e~~~~l~~~l~~~~~v~~iSA~  312 (342)
T 1lnz_A          238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA-----AENLEAFKEKLTDDYPVFPISAV  312 (342)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH-----HHHHHHHHHHCCSCCCBCCCSSC
T ss_pred             cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC-----HHHHHHHHHHhhcCCCEEEEECC
Confidence            99999999998   7788888888888887643  47899999999998542     134556666665  689999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 027949          162 TNLNVEEVFFSIARDIKQ  179 (216)
Q Consensus       162 ~~~gi~~l~~~l~~~i~~  179 (216)
                      ++.|+++++.+|.+.+.+
T Consensus       313 tg~gi~eL~~~l~~~l~~  330 (342)
T 1lnz_A          313 TREGLRELLFEVANQLEN  330 (342)
T ss_dssp             CSSTTHHHHHHHHHHHTS
T ss_pred             CCcCHHHHHHHHHHHHhh
Confidence            999999999999988754

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.89  E-value=5.2e-24  Score=160.52  Aligned_cols=143  Identities=17%  Similarity=0.292  Sum_probs=104.2

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCC---ccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccc--
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTT---SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG--   87 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~--   87 (216)
                      ...++|+|+|++|+|||||+++|.+..+..   .+.++.+.++         ..+.+.+||+||++.+...+..+++.  
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~   80 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRA   80 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhcc
Confidence            456899999999999999999999987653   2333333221         23578999999999998888888877  


Q ss_pred             --ccEEEEEEeCC-CHhHHHHHHHHHHHHHHh----cCCCCcEEEEEeCCCCCCCCCccC------hHHHHHHHHHhCCe
Q 027949           88 --AMGILLVYDVT-DESSFNNIRNWIRNIEQH----ASDNVNKILVGNKADMDESKRAVP------TSKGQALADEYGIK  154 (216)
Q Consensus        88 --~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~----~~~~~p~ivv~nK~Dl~~~~~~~~------~~~~~~~~~~~~~~  154 (216)
                        +|++|+|+|++ +++++..+..|+..+...    ...+.|+++|+||+|+.+... ..      .+++..++...++.
T Consensus        81 ~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-~~~~~~~l~~~~~~~~~~~~~~  159 (218)
T 1nrj_B           81 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP-PSKIKDALESEIQKVIERRKKS  159 (218)
T ss_dssp             GGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCC-HHHHHHHHHHHHHHHHHHHhcc
Confidence              89999999999 888888888888777654    345799999999999965332 12      34456666677789


Q ss_pred             EEEEecCCCCC
Q 027949          155 FFETSAKTNLN  165 (216)
Q Consensus       155 ~~~~Sa~~~~g  165 (216)
                      ++++||++|.+
T Consensus       160 ~~~~Sa~~~~~  170 (218)
T 1nrj_B          160 LNEVERKINEE  170 (218)
T ss_dssp             HHC--------
T ss_pred             ccccccccccc
Confidence            99999998764

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.89  E-value=5.3e-23  Score=171.23  Aligned_cols=153  Identities=24%  Similarity=0.264  Sum_probs=116.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCcc-ccccc--------ccccc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE-RFRTI--------TTAYY   85 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~~~~~--------~~~~~   85 (216)
                      ++|+|+|.+|+|||||+|+|++.+.. ....++++.+.....+.+++  ..+.+|||||.. .+...        ...++
T Consensus       244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~  321 (482)
T 1xzp_A          244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI  321 (482)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence            89999999999999999999988643 44556666777777888887  678999999987 55421        24567


Q ss_pred             ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCC
Q 027949           86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN  165 (216)
Q Consensus        86 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  165 (216)
                      +.+|++|+|+|++++.++.... ++..+     .+.|+++|+||+|+.+.   ...+++..+.. .+++++++||++|.|
T Consensus       322 ~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~---~~~~~~~~~~~-~~~~~i~iSAktg~G  391 (482)
T 1xzp_A          322 EKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK---INEEEIKNKLG-TDRHMVKISALKGEG  391 (482)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC---CCHHHHHHHHT-CSTTEEEEEGGGTCC
T ss_pred             hcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc---cCHHHHHHHhc-CCCcEEEEECCCCCC
Confidence            8899999999999887665532 22222     26899999999999642   23344444332 346899999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 027949          166 VEEVFFSIARDIKQR  180 (216)
Q Consensus       166 i~~l~~~l~~~i~~~  180 (216)
                      +++++++|.+.+...
T Consensus       392 i~eL~~~l~~~~~~~  406 (482)
T 1xzp_A          392 LEKLEESIYRETQEI  406 (482)
T ss_dssp             HHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999999999987753

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.89  E-value=1.3e-22  Score=162.84  Aligned_cols=128  Identities=19%  Similarity=0.209  Sum_probs=104.0

Q ss_pred             EEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEeCCC----------HhHHHHHHHHHHHHHHhc-CCC
Q 027949           52 FKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----------ESSFNNIRNWIRNIEQHA-SDN  120 (216)
Q Consensus        52 ~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~-~~~  120 (216)
                      .....+.+++  +.+.+||++|++.++..|..++++++++|+|||+++          ..++.....|+..+.... ..+
T Consensus       183 i~~~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~  260 (353)
T 1cip_A          183 IVETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD  260 (353)
T ss_dssp             EEEEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTT
T ss_pred             eEEEEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccC
Confidence            3345566665  889999999999999999999999999999999999          457888888888876532 247


Q ss_pred             CcEEEEEeCCCCCCCC--------------CccChHHHHHHHH-----------HhCCeEEEEecCCCCCHHHHHHHHHH
Q 027949          121 VNKILVGNKADMDESK--------------RAVPTSKGQALAD-----------EYGIKFFETSAKTNLNVEEVFFSIAR  175 (216)
Q Consensus       121 ~p~ivv~nK~Dl~~~~--------------~~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~gi~~l~~~l~~  175 (216)
                      .|++||+||+|+.+..              .....+++..++.           ..++.+++|||+++.||+++|.++.+
T Consensus       261 ~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~  340 (353)
T 1cip_A          261 TSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTD  340 (353)
T ss_dssp             SEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHH
Confidence            9999999999984311              1245677777776           24578999999999999999999999


Q ss_pred             HHHHHh
Q 027949          176 DIKQRL  181 (216)
Q Consensus       176 ~i~~~~  181 (216)
                      .+.+..
T Consensus       341 ~i~~~~  346 (353)
T 1cip_A          341 VIIKNN  346 (353)
T ss_dssp             HHHHHC
T ss_pred             HHHHHH
Confidence            998653

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.89  E-value=5.7e-22  Score=159.96  Aligned_cols=161  Identities=17%  Similarity=0.103  Sum_probs=110.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccc---------ccccccccccc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---------FRTITTAYYRG   87 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~~~   87 (216)
                      .|+|+|.+|+|||||+|+|++..+.....++.+.+.....+.+++  ..+.+|||+|.-.         +... ...+..
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t-l~~~~~  257 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT-LSEAKY  257 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH-HHGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH-HHHHHh
Confidence            499999999999999999999876544455566667777888888  5789999999621         2222 224678


Q ss_pred             ccEEEEEEeCCCHh--HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh---CCeEEEEecCC
Q 027949           88 AMGILLVYDVTDES--SFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEY---GIKFFETSAKT  162 (216)
Q Consensus        88 ~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~  162 (216)
                      +|++++|+|++++.  ....+..|...+......+.|+++|+||+|+.+.........+..++..+   +.+++++||++
T Consensus       258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~  337 (364)
T 2qtf_A          258 SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALK  337 (364)
T ss_dssp             SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTT
T ss_pred             CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCC
Confidence            99999999999876  55555556655555444578999999999986422111112233344554   24789999999


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 027949          163 NLNVEEVFFSIARDIKQR  180 (216)
Q Consensus       163 ~~gi~~l~~~l~~~i~~~  180 (216)
                      |.|+++++++|.+.+...
T Consensus       338 g~gi~~L~~~I~~~l~~~  355 (364)
T 2qtf_A          338 RTNLELLRDKIYQLATQL  355 (364)
T ss_dssp             TBSHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHhccc
Confidence            999999999999877653

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.89  E-value=8.8e-24  Score=173.16  Aligned_cols=160  Identities=17%  Similarity=0.164  Sum_probs=116.2

Q ss_pred             CCCceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccc-------c
Q 027949           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT-------T   82 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-------~   82 (216)
                      .....++|+|+|..|+|||||+++|++..+. ....++.+.+.....+.+.+. ..+.+|||||+..+..+.       .
T Consensus        30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~  108 (423)
T 3qq5_A           30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKAR  108 (423)
T ss_dssp             --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHH
Confidence            3456799999999999999999999998763 344555666677777777664 278999999998766542       3


Q ss_pred             cccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCC
Q 027949           83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT  162 (216)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (216)
                      .+++.+|++|+|+|+...+   ....|+..+...   +.|+++|+||+|+.+....   +....+...++++++++||++
T Consensus       109 ~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~---~~~~~l~~~~g~~v~~vSAkt  179 (423)
T 3qq5_A          109 RVFYRADCGILVTDSAPTP---YEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE---ELKGLYESRYEAKVLLVSALQ  179 (423)
T ss_dssp             HHHTSCSEEEEECSSSCCH---HHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT---HHHHHSSCCTTCCCCCCSSCC
T ss_pred             HHHhcCCEEEEEEeCCChH---HHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH---HHHHHHHHHcCCCEEEEECCC
Confidence            4678899999999994333   334566555554   6899999999998654322   556666777789999999999


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 027949          163 NLNVEEVFFSIARDIKQR  180 (216)
Q Consensus       163 ~~gi~~l~~~l~~~i~~~  180 (216)
                      |.|++++|++|.+.+.+.
T Consensus       180 g~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          180 KKGFDDIGKTISEILPGD  197 (423)
T ss_dssp             TTSTTTHHHHHHHHSCCC
T ss_pred             CCCHHHHHHHHHHhhhhh
Confidence            999999999999888544

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.89  E-value=1.6e-22  Score=169.00  Aligned_cols=158  Identities=18%  Similarity=0.170  Sum_probs=113.0

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCC-------CCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccc
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGS-------FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY   84 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~   84 (216)
                      ....++|+++|..++|||||+++|++..       ...+..++.+.+.....+.+++  ..+.+|||||++.|.......
T Consensus        16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~   93 (482)
T 1wb1_A           16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSA   93 (482)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHH
Confidence            3456999999999999999999999876       2233444455555555566666  789999999999988888888


Q ss_pred             cccccEEEEEEeCCC---HhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-ccChHHHHHHHHHh----CCeEE
Q 027949           85 YRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR-AVPTSKGQALADEY----GIKFF  156 (216)
Q Consensus        85 ~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~----~~~~~  156 (216)
                      +..+|++|+|+|+++   +++.+.+.    .+..   .+.|+++|+||+|+.+... ....+++..++...    +++++
T Consensus        94 ~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii  166 (482)
T 1wb1_A           94 ADIIDLALIVVDAKEGPKTQTGEHML----ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSII  166 (482)
T ss_dssp             TTSCCEEEEEEETTTCSCHHHHHHHH----HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEE
T ss_pred             HhhCCEEEEEEecCCCccHHHHHHHH----HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEE
Confidence            899999999999987   44444332    2222   2688899999999864211 12234455555554    57999


Q ss_pred             EEecCCCCCHHHHHHHHHHHHH
Q 027949          157 ETSAKTNLNVEEVFFSIARDIK  178 (216)
Q Consensus       157 ~~Sa~~~~gi~~l~~~l~~~i~  178 (216)
                      ++||++|+|+++++++|.+.+.
T Consensus       167 ~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          167 PISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEECcCCCCHHHHHHHHHHhhc
Confidence            9999999999999999998875

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.88  E-value=2.3e-22  Score=166.53  Aligned_cols=152  Identities=23%  Similarity=0.323  Sum_probs=105.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCccc---------ccccccccc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---------FRTITTAYY   85 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~   85 (216)
                      .+|+|+|.+|||||||+|+|++.... ....++.+.+.....+.+++  ..+.+|||||.+.         +...+..++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC--eEEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            47999999999999999999987753 35566777777788888888  5688999999653         233456678


Q ss_pred             ccccEEEEEEeCCCHhHHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHH-HHHHHHhCC-eEEEEecC
Q 027949           86 RGAMGILLVYDVTDESSFN--NIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKG-QALADEYGI-KFFETSAK  161 (216)
Q Consensus        86 ~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~  161 (216)
                      +.+|++|+|+|+.++.+..  .+..|+.   ..   +.|+++|+||+|+.+.   . .... .++. .+++ .++++||.
T Consensus        80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~---~~---~~p~ilv~NK~D~~~~---~-~~~~~~~~~-~lg~~~~~~iSA~  148 (439)
T 1mky_A           80 READLVLFVVDGKRGITKEDESLADFLR---KS---TVDTILVANKAENLRE---F-EREVKPELY-SLGFGEPIPVSAE  148 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHHHHHHHHHH---HH---TCCEEEEEESCCSHHH---H-HHHTHHHHG-GGSSCSCEECBTT
T ss_pred             HhCCEEEEEEECCCCCCHHHHHHHHHHH---Hc---CCCEEEEEeCCCCccc---c-HHHHHHHHH-hcCCCCEEEEecc
Confidence            9999999999998754432  2333332   21   6899999999997421   0 1222 3343 4566 78999999


Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q 027949          162 TNLNVEEVFFSIARDIKQR  180 (216)
Q Consensus       162 ~~~gi~~l~~~l~~~i~~~  180 (216)
                      +|.|+++++++|.+.+.+.
T Consensus       149 ~g~gv~~L~~~i~~~l~~~  167 (439)
T 1mky_A          149 HNINLDTMLETIIKKLEEK  167 (439)
T ss_dssp             TTBSHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHhcccc
Confidence            9999999999999988653

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.87  E-value=2.8e-21  Score=158.37  Aligned_cols=164  Identities=15%  Similarity=0.129  Sum_probs=113.4

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEE-------EEE---------EE---CCeEEEEEEEeCC
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKI-------RTI---------EL---DGKRIKLQIWDTA   72 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-------~~~---------~~---~~~~~~~~i~D~~   72 (216)
                      ....++|+++|.+|+|||||+++|++............ ....       ..+         ..   ......+.+||||
T Consensus         5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP   83 (403)
T 3sjy_A            5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAET-NIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP   83 (403)
T ss_dssp             CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEE-EEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCcccc-ceeeccccccccceecccccccccccccccccceEEEEECC
Confidence            34559999999999999999999998543321100000 0000       000         00   1123689999999


Q ss_pred             CccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cChHHHHHHHHHh
Q 027949           73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA-VPTSKGQALADEY  151 (216)
Q Consensus        73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~  151 (216)
                      |++.|.......+..+|++|+|+|++++.++.....++..+....  ..|+++|+||+|+.+.... ...+++..+....
T Consensus        84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~  161 (403)
T 3sjy_A           84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGT  161 (403)
T ss_dssp             CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTS
T ss_pred             CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHHhh
Confidence            999998888888999999999999998766666677666555443  3589999999998652211 1112233333222


Q ss_pred             ---CCeEEEEecCCCCCHHHHHHHHHHHHH
Q 027949          152 ---GIKFFETSAKTNLNVEEVFFSIARDIK  178 (216)
Q Consensus       152 ---~~~~~~~Sa~~~~gi~~l~~~l~~~i~  178 (216)
                         +++++++||++|.|+++++++|.+.+.
T Consensus       162 ~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~  191 (403)
T 3sjy_A          162 WAENVPIIPVSALHKINIDSLIEGIEEYIK  191 (403)
T ss_dssp             TTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             CCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence               478999999999999999999987653

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.87  E-value=1.9e-22  Score=167.17  Aligned_cols=152  Identities=20%  Similarity=0.204  Sum_probs=104.5

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccc--------cccc
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT--------TAYY   85 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~~   85 (216)
                      .++|+|+|.+|+|||||+|+|++.+.. ....++.+.+.....+.+++  ..+.+|||||...+...+        ..++
T Consensus       224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~~  301 (462)
T 3geh_A          224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQAA  301 (462)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CCC
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence            489999999999999999999987543 34445666666666677788  678999999976544332        3357


Q ss_pred             ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCC
Q 027949           86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN  165 (216)
Q Consensus        86 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  165 (216)
                      +.+|++++|+|++++.+... ..|+..+.     ..|+++|+||+|+.+.....   ....+.  .+.+++++||++|.|
T Consensus       302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~---~~~~~~--~~~~~i~iSAktg~G  370 (462)
T 3geh_A          302 NTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT---SLEYPE--NITQIVHTAAAQKQG  370 (462)
T ss_dssp             CSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST---TCCCCT--TCCCEEEEBTTTTBS
T ss_pred             hcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH---HHHHhc--cCCcEEEEECCCCCC
Confidence            88999999999998765444 33444442     36999999999986532211   111111  346899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027949          166 VEEVFFSIARDIKQ  179 (216)
Q Consensus       166 i~~l~~~l~~~i~~  179 (216)
                      +++++++|.+.+..
T Consensus       371 i~eL~~~i~~~~~~  384 (462)
T 3geh_A          371 IDSLETAILEIVQT  384 (462)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999988754

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.87  E-value=1.1e-21  Score=157.92  Aligned_cols=127  Identities=20%  Similarity=0.187  Sum_probs=95.4

Q ss_pred             EEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEeCCC----------HhHHHHHHHHHHHHHHh-cCCCCc
Q 027949           54 IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----------ESSFNNIRNWIRNIEQH-ASDNVN  122 (216)
Q Consensus        54 ~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~-~~~~~p  122 (216)
                      ...+.+++  +.+.+||++|++.++..|..++++++++|||||+++          ..++.....|+..+... ...+.|
T Consensus       193 ~~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~p  270 (362)
T 1zcb_A          193 EYDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVS  270 (362)
T ss_dssp             EEEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE
T ss_pred             EEEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCC
Confidence            34556665  789999999999999999999999999999999999          67899988888887654 234799


Q ss_pred             EEEEEeCCCCCCCC--------------C-ccChHHHHHHHH-----------HhCCeEEEEecCCCCCHHHHHHHHHHH
Q 027949          123 KILVGNKADMDESK--------------R-AVPTSKGQALAD-----------EYGIKFFETSAKTNLNVEEVFFSIARD  176 (216)
Q Consensus       123 ~ivv~nK~Dl~~~~--------------~-~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~gi~~l~~~l~~~  176 (216)
                      ++||+||+|+.+..              . ....+++..++.           ..++.+++|||+++.||+++|.++.+.
T Consensus       271 iILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~  350 (362)
T 1zcb_A          271 IILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDT  350 (362)
T ss_dssp             EEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             EEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHH
Confidence            99999999985311              1 145666766651           345789999999999999999999999


Q ss_pred             HHHHhh
Q 027949          177 IKQRLA  182 (216)
Q Consensus       177 i~~~~~  182 (216)
                      +.+..-
T Consensus       351 i~~~~l  356 (362)
T 1zcb_A          351 ILHDNL  356 (362)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            987643

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.87  E-value=9.8e-22  Score=152.09  Aligned_cols=163  Identities=15%  Similarity=0.165  Sum_probs=109.8

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCC-CCCccccc-eeeeEEEEEEEECCeEEEEEEEeCCCcccccccc---------
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGS-FTTSFITT-IGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT---------   81 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~---------   81 (216)
                      ...++|+|+|.+|||||||+++|++.. +.....++ .+.......+.+++  ..+.||||||...+....         
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~   97 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQR   97 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence            456999999999999999999999877 33333343 45556666677777  678999999976543322         


Q ss_pred             --ccccccccEEEEEEeCCCHhH-HHHHHHHHHHHHHhcCCCCcEEEEEe-CCCCCCCCCccCh-------HHHHHHHHH
Q 027949           82 --TAYYRGAMGILLVYDVTDESS-FNNIRNWIRNIEQHASDNVNKILVGN-KADMDESKRAVPT-------SKGQALADE  150 (216)
Q Consensus        82 --~~~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~n-K~Dl~~~~~~~~~-------~~~~~~~~~  150 (216)
                        ..+++.+|++|+|+|+++... ...+..++..+.... ...|.++|+| |+|+.+.  ....       ..+..+...
T Consensus        98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~  174 (260)
T 2xtp_A           98 CYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGG--SLMDYMHDSDNKALSKLVAA  174 (260)
T ss_dssp             HHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTC--CHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCc--cHHHHHHhcchHHHHHHHHH
Confidence              225688999999999986322 122333333332211 1356666666 9998642  1111       234445555


Q ss_pred             hCCe---E--EEEecCCCCCHHHHHHHHHHHHHHH
Q 027949          151 YGIK---F--FETSAKTNLNVEEVFFSIARDIKQR  180 (216)
Q Consensus       151 ~~~~---~--~~~Sa~~~~gi~~l~~~l~~~i~~~  180 (216)
                      .+..   +  +++||++|.|++++|.+|.+.+...
T Consensus       175 ~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~  209 (260)
T 2xtp_A          175 CGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK  209 (260)
T ss_dssp             TTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence            5532   2  7899999999999999999988764

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.87  E-value=1.3e-21  Score=161.79  Aligned_cols=156  Identities=18%  Similarity=0.108  Sum_probs=108.9

Q ss_pred             CCCceEEEEEEcCCCCcHHHHHHHHHcCCC-------------------------------CCccccceeeeEEEEEEEE
Q 027949           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSF-------------------------------TTSFITTIGIDFKIRTIEL   59 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~   59 (216)
                      .....++|+++|.+++|||||+++|+...-                               ..+..++.+.+.....+..
T Consensus        13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~   92 (439)
T 3j2k_7           13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET   92 (439)
T ss_pred             CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence            345679999999999999999999965321                               1122245566666666666


Q ss_pred             CCeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhH---H---HHHHHHHHHHHHhcCCCCc-EEEEEeCCCC
Q 027949           60 DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS---F---NNIRNWIRNIEQHASDNVN-KILVGNKADM  132 (216)
Q Consensus        60 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl  132 (216)
                      ++  ..+.||||||++.|.......+..+|++|+|+|+++...   +   ......+..+..   .+.| +++|+||+|+
T Consensus        93 ~~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~Dl  167 (439)
T 3j2k_7           93 EK--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMDD  167 (439)
T ss_pred             CC--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCCC
Confidence            66  689999999999998888888999999999999987532   1   111222222222   2566 8999999998


Q ss_pred             CCCC-----CccChHHHHHHHHHhC------CeEEEEecCCCCCHHHHHH
Q 027949          133 DESK-----RAVPTSKGQALADEYG------IKFFETSAKTNLNVEEVFF  171 (216)
Q Consensus       133 ~~~~-----~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~  171 (216)
                      ....     .....+++..++...+      ++++++||++|.|++++++
T Consensus       168 ~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          168 PTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            5321     1112234445555544      5799999999999999765

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.87  E-value=1.5e-21  Score=154.63  Aligned_cols=128  Identities=20%  Similarity=0.196  Sum_probs=102.1

Q ss_pred             EEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEeCC----------CHhHHHHHHHHHHHHHHhc-CCC
Q 027949           52 FKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT----------DESSFNNIRNWIRNIEQHA-SDN  120 (216)
Q Consensus        52 ~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~-~~~  120 (216)
                      .....+..++  +.+.+||++|++.++..|..++++++++|+|+|++          +..++.....|+..+.... ..+
T Consensus       157 i~~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~  234 (327)
T 3ohm_A          157 IIEYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQN  234 (327)
T ss_dssp             EEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTT
T ss_pred             EEEEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCC
Confidence            4455566666  89999999999999999999999999999999665          5677888878887776532 247


Q ss_pred             CcEEEEEeCCCCCCCC---------------CccChHHHHHHHH----------HhCCeEEEEecCCCCCHHHHHHHHHH
Q 027949          121 VNKILVGNKADMDESK---------------RAVPTSKGQALAD----------EYGIKFFETSAKTNLNVEEVFFSIAR  175 (216)
Q Consensus       121 ~p~ivv~nK~Dl~~~~---------------~~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~gi~~l~~~l~~  175 (216)
                      .|++|++||+|+.+..               ...+.+++..++.          ..++.+++|||+++.||+.+|..+.+
T Consensus       235 ~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~  314 (327)
T 3ohm_A          235 SSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKD  314 (327)
T ss_dssp             CEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             ceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHH
Confidence            9999999999984321               1346677777743          34578899999999999999999999


Q ss_pred             HHHHHh
Q 027949          176 DIKQRL  181 (216)
Q Consensus       176 ~i~~~~  181 (216)
                      .+++..
T Consensus       315 ~Il~~~  320 (327)
T 3ohm_A          315 TILQLN  320 (327)
T ss_dssp             HHHHTT
T ss_pred             HHHHHh
Confidence            998754

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.87  E-value=9.6e-23  Score=168.68  Aligned_cols=152  Identities=16%  Similarity=0.215  Sum_probs=100.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCcc--------ccccccccccc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE--------RFRTITTAYYR   86 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~   86 (216)
                      .+|+|+|.+|+|||||+|+|++..+. ....++.+.+.....+.+++  ..+.+|||||..        .+...+..+++
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   81 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD   81 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            68999999999999999999987654 23445555555555666666  578999999975        45566777889


Q ss_pred             cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEecCCCCC
Q 027949           87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLN  165 (216)
Q Consensus        87 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g  165 (216)
                      .+|++|+|+|+.++.+...  .++..+..  ..+.|+++|+||+|+.+.....     .++. .+++ .++++||.+|.|
T Consensus        82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~~~~~-----~~~~-~lg~~~~~~iSA~~g~g  151 (436)
T 2hjg_A           82 EADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMRANI-----YDFY-SLGFGEPYPISGTHGLG  151 (436)
T ss_dssp             HCSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC-----CC-----CSSG-GGSSCCCEECBTTTTBT
T ss_pred             hCCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccchhhH-----HHHH-HcCCCCeEEEeCcCCCC
Confidence            9999999999988655433  23333222  2378999999999985422111     1122 3454 789999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027949          166 VEEVFFSIARDIKQ  179 (216)
Q Consensus       166 i~~l~~~l~~~i~~  179 (216)
                      +++++++|.+.+.+
T Consensus       152 v~~L~~~i~~~l~~  165 (436)
T 2hjg_A          152 LGDLLDAVAEHFKN  165 (436)
T ss_dssp             HHHHHHHHHHTGGG
T ss_pred             hHHHHHHHHHhcCc
Confidence            99999999887753

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.87  E-value=3.8e-21  Score=157.85  Aligned_cols=160  Identities=16%  Similarity=0.148  Sum_probs=103.2

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCC---CCccccceeee--EEEEEEEE-------------C--C----eEEEEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSF---TTSFITTIGID--FKIRTIEL-------------D--G----KRIKLQI   68 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~---~~~~~~~~~~~--~~~~~~~~-------------~--~----~~~~~~i   68 (216)
                      ...++|+++|..++|||||+++|++...   ..+..++.+.+  +....+..             +  +    ....+.|
T Consensus         6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   85 (408)
T 1s0u_A            6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF   85 (408)
T ss_dssp             CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence            3459999999999999999999996432   23333422322  22222211             1  1    1368999


Q ss_pred             EeCCCccccccccccccccccEEEEEEeCCC----HhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cChHH
Q 027949           69 WDTAGQERFRTITTAYYRGAMGILLVYDVTD----ESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA-VPTSK  143 (216)
Q Consensus        69 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~  143 (216)
                      ||+||++.|.......+..+|++|+|+|+++    +++.+.+..    +...  ...|+++|+||+|+.+.... ...++
T Consensus        86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~l--~~~~iivv~NK~Dl~~~~~~~~~~~~  159 (408)
T 1s0u_A           86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA----LEIL--GIDKIIIVQNKIDLVDEKQAEENYEQ  159 (408)
T ss_dssp             EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH----HHHT--TCCCEEEEEECTTSSCTTTTTTHHHH
T ss_pred             EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH----HHHc--CCCeEEEEEEccCCCCHHHHHHHHHH
Confidence            9999999887777777788999999999985    444444332    2222  13589999999999754321 23455


Q ss_pred             HHHHHHH---hCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 027949          144 GQALADE---YGIKFFETSAKTNLNVEEVFFSIARDIK  178 (216)
Q Consensus       144 ~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  178 (216)
                      +..++..   .+++++++||++|+|+++++++|.+.+.
T Consensus       160 i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~  197 (408)
T 1s0u_A          160 IKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP  197 (408)
T ss_dssp             HHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred             HHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            6666654   3579999999999999999999987654

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.87  E-value=9.5e-21  Score=144.80  Aligned_cols=165  Identities=17%  Similarity=0.177  Sum_probs=109.7

Q ss_pred             CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCcccc--ceeeeEEEEEEEECCeEEEEEEEeCCCcc-----------cc
Q 027949           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFIT--TIGIDFKIRTIELDGKRIKLQIWDTAGQE-----------RF   77 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----------~~   77 (216)
                      .....++|+|+|.+|+|||||+++|++..+.....+  +.+.......+.+++  ..+.||||||..           .+
T Consensus        25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~  102 (239)
T 3lxx_A           25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEI  102 (239)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHH
Confidence            345679999999999999999999999887654444  455566666777777  578999999943           33


Q ss_pred             ccccccccccccEEEEEEeCCCHhH--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc-----ChHHHHHHHHH
Q 027949           78 RTITTAYYRGAMGILLVYDVTDESS--FNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAV-----PTSKGQALADE  150 (216)
Q Consensus        78 ~~~~~~~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-----~~~~~~~~~~~  150 (216)
                      .......++.+|++|+|+|+++...  ...+..+...+....  ..|++||+||+|+.+.....     ..+.++.++..
T Consensus       103 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~--~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~  180 (239)
T 3lxx_A          103 IRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERA--RSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI  180 (239)
T ss_dssp             HHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHH--GGGEEEEEECGGGC------------CHHHHHHHHH
T ss_pred             HHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhc--cceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH
Confidence            4444555678899999999876433  222222222222221  36999999999985432111     12467788888


Q ss_pred             hCCeEEEEecCCC-----CCHHHHHHHHHHHHHH
Q 027949          151 YGIKFFETSAKTN-----LNVEEVFFSIARDIKQ  179 (216)
Q Consensus       151 ~~~~~~~~Sa~~~-----~gi~~l~~~l~~~i~~  179 (216)
                      .+..++.++...+     .++.+++..+.+.+.+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          181 FGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             HSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            8888888877644     6888888888777654

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.87  E-value=1e-21  Score=157.55  Aligned_cols=120  Identities=14%  Similarity=0.214  Sum_probs=94.1

Q ss_pred             eEEEEEEEeCCCccccccccccccccccEEEEEEeCC----------CHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCC
Q 027949           62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT----------DESSFNNIRNWIRNIEQHA-SDNVNKILVGNKA  130 (216)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~  130 (216)
                      ..+.+.+||++|++.++..|..++++++++|+|||++          +..++.....|+..+.... ..+.|++||+||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            5689999999999999999999999999999999998          7788999989888876542 2479999999999


Q ss_pred             CCCCCCCc--------------------cChHHHHHHHHH----------------hCCeEEEEecCCCCCHHHHHHHHH
Q 027949          131 DMDESKRA--------------------VPTSKGQALADE----------------YGIKFFETSAKTNLNVEEVFFSIA  174 (216)
Q Consensus       131 Dl~~~~~~--------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~l~  174 (216)
                      |+.+....                    ...+++..++..                ..+.+++|||+++.||+++|.++.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            98432110                    013556666432                124568999999999999999999


Q ss_pred             HHHHHHh
Q 027949          175 RDIKQRL  181 (216)
Q Consensus       175 ~~i~~~~  181 (216)
                      +.+.+..
T Consensus       341 ~~I~~~~  347 (354)
T 2xtz_A          341 ETLRRRN  347 (354)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988754

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.86  E-value=2.8e-21  Score=152.49  Aligned_cols=156  Identities=19%  Similarity=0.156  Sum_probs=109.5

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCC-ccccceeeeEEEEEEEECCeEEEEEEEeCCCcc---------ccccccccc
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE---------RFRTITTAY   84 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~   84 (216)
                      ..+|+|+|.+|+|||||+|+|++..+.. ...+..+.......+..++  ..+.+|||||..         .+.......
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~   85 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASSS   85 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence            3579999999999999999999987532 2233333333344455555  688999999986         234445677


Q ss_pred             cccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEecCCC
Q 027949           85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTN  163 (216)
Q Consensus        85 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  163 (216)
                      ++.+|++++|+|+++   +.....++.....  ..+.|+++|+||+|+.+ ......+.+..+...+++ .++++||++|
T Consensus        86 l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~-~~~~~~~~l~~l~~~~~~~~~i~iSA~~g  159 (301)
T 1ega_A           86 IGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNVQ-EKADLLPHLQFLASQMNFLDIVPISAETG  159 (301)
T ss_dssp             CCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTCC-CHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred             HhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccCc-cHHHHHHHHHHHHHhcCcCceEEEECCCC
Confidence            889999999999976   2222233322222  23689999999999854 122233445556555665 7999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 027949          164 LNVEEVFFSIARDIK  178 (216)
Q Consensus       164 ~gi~~l~~~l~~~i~  178 (216)
                      .|+++++++|.+.+.
T Consensus       160 ~~v~~l~~~i~~~l~  174 (301)
T 1ega_A          160 LNVDTIAAIVRKHLP  174 (301)
T ss_dssp             TTHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHhCC
Confidence            999999999887553

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.86  E-value=2.3e-21  Score=164.87  Aligned_cols=158  Identities=25%  Similarity=0.320  Sum_probs=111.0

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCC--CCC-------------ccccceeeeEEEEEEEE---CCeEEEEEEEeCCCcc
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGS--FTT-------------SFITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQE   75 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~--~~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~   75 (216)
                      ...+|+|+|..++|||||+++|+...  +..             +...+.+.......+.+   ++..+.++||||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            46899999999999999999998632  110             01112222222233333   4556899999999999


Q ss_pred             ccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC--
Q 027949           76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI--  153 (216)
Q Consensus        76 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--  153 (216)
                      .|...+...++.+|++|+|+|+++.........|...+.    .+.|+++|+||+|+.++.   ..+....+...+++  
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~---~~~v~~ei~~~lg~~~  155 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD---PERVAEEIEDIVGIDA  155 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC---HHHHHHHHHHHTCCCC
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc---HHHHHHHHHHHhCCCc
Confidence            998888889999999999999998776666666665543    268999999999996532   23334555566665  


Q ss_pred             -eEEEEecCCCCCHHHHHHHHHHHHH
Q 027949          154 -KFFETSAKTNLNVEEVFFSIARDIK  178 (216)
Q Consensus       154 -~~~~~Sa~~~~gi~~l~~~l~~~i~  178 (216)
                       .++++||++|.|+++++++|.+.+.
T Consensus       156 ~~vi~vSAktg~GI~~Ll~~I~~~lp  181 (599)
T 3cb4_D          156 TDAVRCSAKTGVGVQDVLERLVRDIP  181 (599)
T ss_dssp             TTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred             ceEEEeecccCCCchhHHHHHhhcCC
Confidence             4999999999999999999988764

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.86  E-value=1.8e-22  Score=157.51  Aligned_cols=162  Identities=18%  Similarity=0.227  Sum_probs=92.5

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCc-c-------ccceeeeEEEEEEEECCeEEEEEEEeCCCccc-------
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTS-F-------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-------   76 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------   76 (216)
                      ..+.++|+|+|.+|+|||||+|+|++...... +       .++.+.+.....+..++..+.+.+|||||...       
T Consensus         5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~   84 (274)
T 3t5d_A            5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC   84 (274)
T ss_dssp             --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred             CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence            45679999999999999999999887665432 2       45555555555555566667999999999632       


Q ss_pred             ccccc-------cccc-------------ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027949           77 FRTIT-------TAYY-------------RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK  136 (216)
Q Consensus        77 ~~~~~-------~~~~-------------~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  136 (216)
                      +..+.       ..++             ..+|+++|+++.+.......-..++..+..    +.|+++|+||+|+....
T Consensus        85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~  160 (274)
T 3t5d_A           85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE  160 (274)
T ss_dssp             THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence            22211       1222             237789999976652211122233444433    68999999999975321


Q ss_pred             C-ccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Q 027949          137 R-AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI  177 (216)
Q Consensus       137 ~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  177 (216)
                      . ....+.+.......+++++.+|+.+++|+++++.+|.+.+
T Consensus       161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence            1 1112334555566789999999999999999999987654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.86  E-value=7e-21  Score=157.65  Aligned_cols=161  Identities=20%  Similarity=0.139  Sum_probs=107.4

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccc----------
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT----------   81 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----------   81 (216)
                      +..++|+|+|.+|||||||+|+|++.... ....++.+.+.....+.+++.  .+.+|||+|........          
T Consensus       178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~  255 (439)
T 1mky_A          178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY  255 (439)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred             ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence            34599999999999999999999987642 334455555666677788884  67899999974332211          


Q ss_pred             --ccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHH-HH----HHHhCCe
Q 027949           82 --TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQ-AL----ADEYGIK  154 (216)
Q Consensus        82 --~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~  154 (216)
                        ...++.+|++++++|+.+..+.... .+...+..   .+.|+++|+||+|+.+.. ....++.. .+    ....+++
T Consensus       256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~  330 (439)
T 1mky_A          256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHR-EKRYDEFTKLFREKLYFIDYSP  330 (439)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTG-GGCHHHHHHHHHHHCGGGTTSC
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCch-hhHHHHHHHHHHHHhccCCCCc
Confidence              2345678999999999876554432 22222322   278999999999986422 22222222 22    2223479


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHH
Q 027949          155 FFETSAKTNLNVEEVFFSIARDIKQR  180 (216)
Q Consensus       155 ~~~~Sa~~~~gi~~l~~~l~~~i~~~  180 (216)
                      ++++||++|.|++++|+.+.+.+.+.
T Consensus       331 ~~~~SA~~g~gv~~l~~~i~~~~~~~  356 (439)
T 1mky_A          331 LIFTSADKGWNIDRMIDAMNLAYASY  356 (439)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999877665

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.86  E-value=3.1e-21  Score=158.51  Aligned_cols=162  Identities=15%  Similarity=0.164  Sum_probs=110.8

Q ss_pred             CCCceEEEEEEcCCCCcHHHHHHHHHcCCC---CCccccceeeeEEEEEEEE---------------C--C----eEEEE
Q 027949           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSF---TTSFITTIGIDFKIRTIEL---------------D--G----KRIKL   66 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~---~~~~~~~~~~~~~~~~~~~---------------~--~----~~~~~   66 (216)
                      .....++|+++|..++|||||+++|++...   ..+..++.+.+.......+               .  +    ....+
T Consensus         6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i   85 (410)
T 1kk1_A            6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV   85 (410)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence            346679999999999999999999996432   2333343333322222211               0  1    13689


Q ss_pred             EEEeCCCccccccccccccccccEEEEEEeCCC----HhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-ccCh
Q 027949           67 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----ESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR-AVPT  141 (216)
Q Consensus        67 ~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~  141 (216)
                      .|||+||++.|.......+..+|++|+|+|+++    +++.+.+..    +....  ..|+++|+||+|+.+... ....
T Consensus        86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~~--~~~iivviNK~Dl~~~~~~~~~~  159 (410)
T 1kk1_A           86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQIIG--QKNIIIAQNKIELVDKEKALENY  159 (410)
T ss_dssp             EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHHHT--CCCEEEEEECGGGSCHHHHHHHH
T ss_pred             EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHHcC--CCcEEEEEECccCCCHHHHHHHH
Confidence            999999999887777777788999999999985    344444332    22221  357899999999865321 1122


Q ss_pred             HHHHHHHHH---hCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 027949          142 SKGQALADE---YGIKFFETSAKTNLNVEEVFFSIARDIK  178 (216)
Q Consensus       142 ~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  178 (216)
                      +++..++..   .+++++++||++|.|+++++++|.+.+.
T Consensus       160 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~  199 (410)
T 1kk1_A          160 RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  199 (410)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            344555543   3579999999999999999999987654

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.86  E-value=4.4e-21  Score=162.99  Aligned_cols=159  Identities=21%  Similarity=0.303  Sum_probs=113.4

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCC--CCC-------------ccccceeeeEEEEEEEE---CCeEEEEEEEeCCCc
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGS--FTT-------------SFITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQ   74 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~--~~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~   74 (216)
                      +...+|+|+|..++|||||+++|+...  +..             +...+.+.......+.+   ++..+.++||||||+
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            457899999999999999999997631  110             00111121111122222   455689999999999


Q ss_pred             cccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-
Q 027949           75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI-  153 (216)
Q Consensus        75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-  153 (216)
                      ..|...+...++.+|++|+|+|+++.........|.....    .+.|+++|+||+|+.++.   .......+...+++ 
T Consensus        84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~---~~~v~~el~~~lg~~  156 (600)
T 2ywe_A           84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD---VDRVKKQIEEVLGLD  156 (600)
T ss_dssp             GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC---HHHHHHHHHHTSCCC
T ss_pred             HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC---HHHHHHHHHHhhCCC
Confidence            9998888888999999999999999877777766665443    278999999999986532   22334455555665 


Q ss_pred             --eEEEEecCCCCCHHHHHHHHHHHHH
Q 027949          154 --KFFETSAKTNLNVEEVFFSIARDIK  178 (216)
Q Consensus       154 --~~~~~Sa~~~~gi~~l~~~l~~~i~  178 (216)
                        .++++||++|.|+++++++|++.+.
T Consensus       157 ~~~vi~vSAktg~GI~~Lle~I~~~lp  183 (600)
T 2ywe_A          157 PEEAILASAKEGIGIEEILEAIVNRIP  183 (600)
T ss_dssp             GGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             cccEEEEEeecCCCchHHHHHHHHhcc
Confidence              4999999999999999999988764

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.85  E-value=3.2e-23  Score=173.99  Aligned_cols=158  Identities=18%  Similarity=0.178  Sum_probs=115.3

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEE-CCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      .++|+|+|.+|+|||||+++|.+..+.....++.+.+.....+.+ ++  ..+.||||||++.|..++..++..+|++|+
T Consensus         4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g--~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG--EKITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS--SCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCC--CEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            378999999999999999999987765555555555554444444 33  478899999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHH---HHHh--CCeEEEEecCCCCCHHH
Q 027949           94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQAL---ADEY--GIKFFETSAKTNLNVEE  168 (216)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~---~~~~--~~~~~~~Sa~~~~gi~~  168 (216)
                      |+|+++.........| ..+.   ..+.|+++|+||+|+.+............+   +..+  .++++++||++|.|+++
T Consensus        82 VVDa~dg~~~qt~e~l-~~~~---~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e  157 (537)
T 3izy_P           82 VVAADDGVMKQTVESI-QHAK---DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA  157 (537)
T ss_dssp             ECBSSSCCCHHHHHHH-HHHH---TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred             EEECCCCccHHHHHHH-HHHH---HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence            9999986544333222 2222   237899999999998654333223333222   1112  25899999999999999


Q ss_pred             HHHHHHHHHH
Q 027949          169 VFFSIARDIK  178 (216)
Q Consensus       169 l~~~l~~~i~  178 (216)
                      ++++|...+.
T Consensus       158 Lle~I~~l~~  167 (537)
T 3izy_P          158 LAEATIALAE  167 (537)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHhhh
Confidence            9999987653

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.84  E-value=4.6e-21  Score=158.51  Aligned_cols=155  Identities=19%  Similarity=0.124  Sum_probs=105.5

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCC---Cc---------cc---------------------cceeeeEEEEEEE
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFT---TS---------FI---------------------TTIGIDFKIRTIE   58 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~---~~---------~~---------------------~~~~~~~~~~~~~   58 (216)
                      ....++|+++|..++|||||+++|++....   ..         ..                     .+.+.+.....+.
T Consensus        21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~  100 (434)
T 1zun_B           21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS  100 (434)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence            356699999999999999999999865310   00         00                     1122222333344


Q ss_pred             ECCeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc
Q 027949           59 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA  138 (216)
Q Consensus        59 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  138 (216)
                      .++  ..+.||||||++.|......++..+|++|+|+|+++... .....++..+....  ..|+++|+||+|+.+....
T Consensus       101 ~~~--~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~~--~~~iIvviNK~Dl~~~~~~  175 (434)
T 1zun_B          101 TAK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLLG--IKHIVVAINKMDLNGFDER  175 (434)
T ss_dssp             CSS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHTT--CCEEEEEEECTTTTTSCHH
T ss_pred             cCC--ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHcC--CCeEEEEEEcCcCCcccHH
Confidence            444  678999999999988878888899999999999988642 22333333333321  2368999999998652211


Q ss_pred             ---cChHHHHHHHHHhC-----CeEEEEecCCCCCHHHHHH
Q 027949          139 ---VPTSKGQALADEYG-----IKFFETSAKTNLNVEEVFF  171 (216)
Q Consensus       139 ---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~  171 (216)
                         ...++...++..++     ++++++||++|.|+++++.
T Consensus       176 ~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~  216 (434)
T 1zun_B          176 VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE  216 (434)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred             HHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence               12345566666676     6899999999999998544

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.84  E-value=4.5e-22  Score=165.51  Aligned_cols=156  Identities=16%  Similarity=0.162  Sum_probs=100.0

Q ss_pred             CCCceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCC--------cccccccc
Q 027949           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAG--------QERFRTIT   81 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G--------~~~~~~~~   81 (216)
                      ......+|+|+|.+|||||||+|+|++..+. ....++.+.+.....+.+.+  ..+.+|||||        .+.+....
T Consensus        19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~   96 (456)
T 4dcu_A           19 SHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQA   96 (456)
T ss_dssp             ----CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCS--SCCEEECCCC------CCHHHHHHHH
T ss_pred             hhcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECC--ceEEEEECCCCCCcchHHHHHHHHHH
Confidence            3344579999999999999999999987654 23334444444444544455  6889999999        55666777


Q ss_pred             ccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEec
Q 027949           82 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSA  160 (216)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa  160 (216)
                      ..+++.+|++|+|+|..+..+.  ...++..+...  .+.|+++|+||+|+.+...     ...++. .++. .++++||
T Consensus        97 ~~~~~~ad~il~VvD~~~~~~~--~d~~l~~~l~~--~~~pvilV~NK~D~~~~~~-----~~~e~~-~lg~~~~~~iSA  166 (456)
T 4dcu_A           97 EIAMDEADVIIFMVNGREGVTA--ADEEVAKILYR--TKKPVVLAVNKLDNTEMRA-----NIYDFY-SLGFGEPYPISG  166 (456)
T ss_dssp             HHHHHHCSEEEEEEESSSCSCH--HHHHHHHHHTT--CCSCEEEEEECC--------------CCSG-GGSSSSEEECCT
T ss_pred             HhhHhhCCEEEEEEeCCCCCCh--HHHHHHHHHHH--cCCCEEEEEECccchhhhh-----hHHHHH-HcCCCceEEeec
Confidence            8888999999999998764322  22333333222  4789999999999753211     111111 2332 6789999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q 027949          161 KTNLNVEEVFFSIARDIK  178 (216)
Q Consensus       161 ~~~~gi~~l~~~l~~~i~  178 (216)
                      .+|.|++++++++.+.+.
T Consensus       167 ~~g~gv~~L~~~i~~~l~  184 (456)
T 4dcu_A          167 THGLGLGDLLDAVAEHFK  184 (456)
T ss_dssp             TTCTTHHHHHHHHHTTGG
T ss_pred             ccccchHHHHHHHHhhcc
Confidence            999999999999987664

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.84  E-value=4.3e-20  Score=146.78  Aligned_cols=125  Identities=17%  Similarity=0.220  Sum_probs=98.9

Q ss_pred             EEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEeCC----------CHhHHHHHHHHHHHHHHhc-CCCC
Q 027949           53 KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT----------DESSFNNIRNWIRNIEQHA-SDNV  121 (216)
Q Consensus        53 ~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~-~~~~  121 (216)
                      ....+.+++  +.+.+||++|++.++..|..++++++++|+|||++          +..++.....|+..+.... ..+.
T Consensus       152 ~~~~~~~~~--v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~  229 (340)
T 4fid_A          152 HEYDFVVKD--IPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGA  229 (340)
T ss_dssp             EEEEEESSS--CEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTS
T ss_pred             EEEEEEeee--eeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCC
Confidence            344455555  88999999999999999999999999999999998          6788888888887776543 3579


Q ss_pred             cEEEEEeCCCCCCCC--------------CccChHHHHHHHHH-h--------------------------CCeEEEEec
Q 027949          122 NKILVGNKADMDESK--------------RAVPTSKGQALADE-Y--------------------------GIKFFETSA  160 (216)
Q Consensus       122 p~ivv~nK~Dl~~~~--------------~~~~~~~~~~~~~~-~--------------------------~~~~~~~Sa  160 (216)
                      |++|++||+|+....              .....+++..++.. .                          .+.+++|||
T Consensus       230 piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA  309 (340)
T 4fid_A          230 VKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNA  309 (340)
T ss_dssp             EEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECT
T ss_pred             eEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEe
Confidence            999999999984310              11234555544432 2                          367899999


Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q 027949          161 KTNLNVEEVFFSIARDIKQ  179 (216)
Q Consensus       161 ~~~~gi~~l~~~l~~~i~~  179 (216)
                      +++.+|+.+|..+.+.+++
T Consensus       310 ~dt~nv~~vF~~v~~~Il~  328 (340)
T 4fid_A          310 TDGSNIKRVFMLAVDVIMK  328 (340)
T ss_dssp             TCHHHHHHHHHHHHHHHHH
T ss_pred             eCcHHHHHHHHHHHHHHHH
Confidence            9999999999999999998

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.84  E-value=1.9e-20  Score=156.71  Aligned_cols=153  Identities=15%  Similarity=0.090  Sum_probs=100.5

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCC-------------------------------CCccccceeeeEEEEEEEECC
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSF-------------------------------TTSFITTIGIDFKIRTIELDG   61 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~   61 (216)
                      ...++|+++|.+|+|||||+++|+....                               ..+..++.+.+.....+...+
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~  110 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  110 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence            4569999999999999999999976511                               111122334444444455554


Q ss_pred             eEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHH------HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027949           62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN------NIRNWIRNIEQHASDNVNKILVGNKADMDES  135 (216)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~------~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  135 (216)
                        +.+.||||||++.|......+++.+|++|+|+|++++..+.      .....+..+...  ...|++||+||+|+.+.
T Consensus       111 --~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~  186 (483)
T 3p26_A          111 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDW  186 (483)
T ss_dssp             --CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTT
T ss_pred             --ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccc
Confidence              78999999999999988889999999999999999875432      122222222222  13569999999998652


Q ss_pred             CCcc---ChHHHHHHHHHh-----CCeEEEEecCCCCCHHHH
Q 027949          136 KRAV---PTSKGQALADEY-----GIKFFETSAKTNLNVEEV  169 (216)
Q Consensus       136 ~~~~---~~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~l  169 (216)
                      ....   ..+++..+....     +++++++||++|+|++++
T Consensus       187 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el  228 (483)
T 3p26_A          187 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  228 (483)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence            2111   122333344433     368999999999999864

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.84  E-value=4.7e-20  Score=149.61  Aligned_cols=127  Identities=17%  Similarity=0.180  Sum_probs=100.6

Q ss_pred             EEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEeCCC----------HhHHHHHHHHHHHHHHhc-CCCCcE
Q 027949           55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----------ESSFNNIRNWIRNIEQHA-SDNVNK  123 (216)
Q Consensus        55 ~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~-~~~~p~  123 (216)
                      ..+.+++  +.+.+||++|++.++..|..++++++++|+|||+++          ..++..+..|+..+.... ..+.|+
T Consensus       210 ~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pi  287 (402)
T 1azs_C          210 TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISV  287 (402)
T ss_dssp             EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCE
T ss_pred             EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeE
Confidence            4455666  889999999999999999999999999999999999          889999999998887652 357999


Q ss_pred             EEEEeCCCCCCCCC--cc---------------------------ChHHHHHHH-----HH--------hCCeEEEEecC
Q 027949          124 ILVGNKADMDESKR--AV---------------------------PTSKGQALA-----DE--------YGIKFFETSAK  161 (216)
Q Consensus       124 ivv~nK~Dl~~~~~--~~---------------------------~~~~~~~~~-----~~--------~~~~~~~~Sa~  161 (216)
                      +||+||+|+.....  ..                           ..+++..|+     ..        ..+.+++|||+
T Consensus       288 iLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~  367 (402)
T 1azs_C          288 ILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAV  367 (402)
T ss_dssp             EEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTT
T ss_pred             EEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEee
Confidence            99999999843211  01                           134455553     22        24677899999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhhc
Q 027949          162 TNLNVEEVFFSIARDIKQRLAD  183 (216)
Q Consensus       162 ~~~gi~~l~~~l~~~i~~~~~~  183 (216)
                      ++.||+++|.++.+.+++...+
T Consensus       368 d~~nV~~vF~~v~~~I~~~~l~  389 (402)
T 1azs_C          368 DTENIRRVFNDCRDIIQRMHLR  389 (402)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998876543

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.83  E-value=2.5e-20  Score=156.92  Aligned_cols=116  Identities=16%  Similarity=0.114  Sum_probs=86.0

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCC------------------CC----CccccceeeeEEEEEEEECCeEEEEEEEe
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGS------------------FT----TSFITTIGIDFKIRTIELDGKRIKLQIWD   70 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D   70 (216)
                      +...+|+|+|.+|+|||||+++|+...                  +.    ....++.+.......+.+.+  +.+.|||
T Consensus        11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liD   88 (528)
T 3tr5_A           11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLD   88 (528)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEEC
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEE
Confidence            356899999999999999999996211                  00    00112333444455666776  7899999


Q ss_pred             CCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949           71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE  134 (216)
Q Consensus        71 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (216)
                      |||+..|...+..+++.+|++|+|+|+++.........|. .+..   .+.|+++|+||+|+..
T Consensus        89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~---~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL---RHTPIMTFINKMDRDT  148 (528)
T ss_dssp             CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT---TTCCEEEEEECTTSCC
T ss_pred             CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH---cCCCEEEEEeCCCCcc
Confidence            9999999988899999999999999999876655554443 3332   3789999999999854

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.83  E-value=8.9e-21  Score=140.00  Aligned_cols=113  Identities=17%  Similarity=0.323  Sum_probs=86.9

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCC---ccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccc--
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTT---SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG--   87 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~--   87 (216)
                      ...++|+|+|.+|||||||+++|.+..+..   ...++.+.       .+  ..+.+.+||+||...+...+..++..  
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-------~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~  116 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-------DY--DGSGVTLVDFPGHVKLRYKLSDYLKTRA  116 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------------CC--CCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee-------ee--cCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence            456899999999999999999999987543   12222221       11  23678999999999888877777766  


Q ss_pred             --ccEEEEEEeCC-CHhHHHHHHHHHHHHHHh----cCCCCcEEEEEeCCCCCC
Q 027949           88 --AMGILLVYDVT-DESSFNNIRNWIRNIEQH----ASDNVNKILVGNKADMDE  134 (216)
Q Consensus        88 --~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~----~~~~~p~ivv~nK~Dl~~  134 (216)
                        +|++|+|+|++ ++.++..+..|+..+...    ...+.|+++|+||+|+.+
T Consensus       117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  170 (193)
T 2ged_A          117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT  170 (193)
T ss_dssp             GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred             ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcC
Confidence              89999999999 899999988888776554    334799999999999865

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.83  E-value=2.1e-21  Score=156.80  Aligned_cols=163  Identities=22%  Similarity=0.324  Sum_probs=89.8

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCC-Cccc--------cceeeeEEEEEEEECCeEEEEEEEeCCCc-------cc
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFI--------TTIGIDFKIRTIELDGKRIKLQIWDTAGQ-------ER   76 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~   76 (216)
                      ...++|+|+|.+|+|||||+++|++.... ..+.        ++.+.......+..++..+.+.+|||||.       +.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            45689999999999999999998765432 2221        34343333444455666678999999998       55


Q ss_pred             cccccc-------cccccc-------------cEEEEEEeCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027949           77 FRTITT-------AYYRGA-------------MGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDES  135 (216)
Q Consensus        77 ~~~~~~-------~~~~~~-------------d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  135 (216)
                      +..++.       .+++.+             |+++|+++.. ..++..+. .++..+    ..+.|+++|+||+|+...
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~  189 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTL  189 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCH
Confidence            665554       444332             3455555532 22333333 233333    347899999999998642


Q ss_pred             CCccCh--HHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 027949          136 KRAVPT--SKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA  182 (216)
Q Consensus       136 ~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  182 (216)
                       ..+..  +.+..++..++++++++||+++.+ ++.|.++.+.+.+...
T Consensus       190 -~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip  236 (361)
T 2qag_A          190 -KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIP  236 (361)
T ss_dssp             -HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCS
T ss_pred             -HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCC
Confidence             22222  456666677789999999999999 9999999998876543

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.83  E-value=4.5e-21  Score=158.57  Aligned_cols=153  Identities=18%  Similarity=0.168  Sum_probs=103.5

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcC--CCCCc-----------------------------cccceeeeEEEEEEEECCe
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDG--SFTTS-----------------------------FITTIGIDFKIRTIELDGK   62 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~   62 (216)
                      ..++|+++|..++|||||+++|+..  .+...                             ..++.+.+.....+...+ 
T Consensus         5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~-   83 (435)
T 1jny_A            5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK-   83 (435)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS-
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC-
Confidence            4599999999999999999999864  22211                             012333334334444444 


Q ss_pred             EEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHH-------HHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027949           63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW-------IRNIEQHASDNVNKILVGNKADMDES  135 (216)
Q Consensus        63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~-------~~~~~~~~~~~~p~ivv~nK~Dl~~~  135 (216)
                       +.+.||||||+..|......+++.+|++|+|+|+++ .+|+....|       +..+...  ...|+++++||+|+.+.
T Consensus        84 -~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~--~~~~iivviNK~Dl~~~  159 (435)
T 1jny_A           84 -YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDLTEP  159 (435)
T ss_dssp             -CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGGSSS
T ss_pred             -eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc--CCCeEEEEEEcccCCCc
Confidence             689999999999998888889999999999999998 556543322       2222211  12468999999998652


Q ss_pred             CC-----ccChHHHHHHHHHhC-----CeEEEEecCCCCCHHHHHH
Q 027949          136 KR-----AVPTSKGQALADEYG-----IKFFETSAKTNLNVEEVFF  171 (216)
Q Consensus       136 ~~-----~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~  171 (216)
                      ..     ....+++..++..++     ++++++||++|.|+.+++.
T Consensus       160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          160 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence            11     122355666776665     6899999999999986654

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.83  E-value=8e-20  Score=155.57  Aligned_cols=160  Identities=19%  Similarity=0.151  Sum_probs=106.1

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEEC-----------C-----eEEEEEEEeCCCccccc
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-----------G-----KRIKLQIWDTAGQERFR   78 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-----~~~~~~i~D~~G~~~~~   78 (216)
                      .++|+|+|.+++|||||+++|++..+......+.+.+.....+.++           +     ....+.||||||+..|.
T Consensus         5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~   84 (594)
T 1g7s_A            5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFT   84 (594)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCT
T ss_pred             CcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHH
Confidence            3789999999999999999998765432211111111111111110           0     11258999999999999


Q ss_pred             cccccccccccEEEEEEeCCC---HhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc------------Ch--
Q 027949           79 TITTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAV------------PT--  141 (216)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~------------~~--  141 (216)
                      .++...++.+|++|+|+|+++   +.++..+..    +..   .+.|+++++||+|+.+.....            ..  
T Consensus        85 ~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v  157 (594)
T 1g7s_A           85 TLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQV  157 (594)
T ss_dssp             TSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHH
T ss_pred             HHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHHH
Confidence            999888999999999999998   666554432    222   378999999999986421100            00  


Q ss_pred             -H-------HHHHHHHHhC---------------CeEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 027949          142 -S-------KGQALADEYG---------------IKFFETSAKTNLNVEEVFFSIARDIKQRL  181 (216)
Q Consensus       142 -~-------~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  181 (216)
                       +       +......+.+               ++++++||++|.|+++++++|...+....
T Consensus       158 ~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~  220 (594)
T 1g7s_A          158 QQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYL  220 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccc
Confidence             0       1111111211               38999999999999999999998776443

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.83  E-value=1.6e-20  Score=154.03  Aligned_cols=147  Identities=18%  Similarity=0.143  Sum_probs=102.4

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcC--------CCCCc---------cccceeeeEEEEEEEECCeEEEEEEEeCCCcc
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDG--------SFTTS---------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   75 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~--------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (216)
                      ...++|+++|.+++|||||+++|++.        .+...         ...+.+.+.....+...+  ..+.||||||++
T Consensus         9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~~~iiDtpG~~   86 (405)
T 2c78_A            9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGHA   86 (405)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCSG
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCC--eEEEEEECCChH
Confidence            45699999999999999999999873        11110         122333333333344444  678999999999


Q ss_pred             ccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC--ccChHHHHHHHHHhC
Q 027949           76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KILVGNKADMDESKR--AVPTSKGQALADEYG  152 (216)
Q Consensus        76 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~  152 (216)
                      .|.......+..+|++|+|+|+++... .....++..+...   +.| +++|+||+|+.+...  ....+++..++..++
T Consensus        87 ~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~  162 (405)
T 2c78_A           87 DYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE  162 (405)
T ss_dssp             GGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence            988878888899999999999988643 3334455444433   678 889999999864211  111234556666655


Q ss_pred             -----CeEEEEecCCCCC
Q 027949          153 -----IKFFETSAKTNLN  165 (216)
Q Consensus       153 -----~~~~~~Sa~~~~g  165 (216)
                           ++++++||++|.|
T Consensus       163 ~~~~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          163 FPGDEVPVIRGSALLALE  180 (405)
T ss_dssp             SCTTTSCEEECCHHHHHH
T ss_pred             ccccCCCEEEccHHHhhh
Confidence                 6899999999987

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.83  E-value=3.5e-20  Score=151.59  Aligned_cols=157  Identities=18%  Similarity=0.140  Sum_probs=106.3

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCC-------CCC---------ccccceeeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGS-------FTT---------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR   78 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~-------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   78 (216)
                      .++|+++|..++|||||+++|++..       +..         +...+.+.+.....+..++  ..+.||||||++.|.
T Consensus         3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~~~iiDtpG~~~f~   80 (397)
T 1d2e_A            3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA--RHYAHTDCPGHADYV   80 (397)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSS--CEEEEEECSSHHHHH
T ss_pred             eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCC--eEEEEEECCChHHHH
Confidence            4899999999999999999998731       110         0122233333333333333  678999999999888


Q ss_pred             cccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC--ccChHHHHHHHHHhC---
Q 027949           79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KILVGNKADMDESKR--AVPTSKGQALADEYG---  152 (216)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~---  152 (216)
                      ......+..+|++|+|+|+++....... ..+..+...   +.| +++++||+|+.+...  ....+++..++..++   
T Consensus        81 ~~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l~~~~~~---~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~  156 (397)
T 1d2e_A           81 KNMITGTAPLDGCILVVAANDGPMPQTR-EHLLLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG  156 (397)
T ss_dssp             HHHHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHhhHhhCCEEEEEEECCCCCCHHHH-HHHHHHHHc---CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence            7788888999999999999885432222 222333322   678 689999999864211  112245566666665   


Q ss_pred             --CeEEEEecCCCCC----------HHHHHHHHHHHH
Q 027949          153 --IKFFETSAKTNLN----------VEEVFFSIARDI  177 (216)
Q Consensus       153 --~~~~~~Sa~~~~g----------i~~l~~~l~~~i  177 (216)
                        ++++++||++|.|          +++++++|.+.+
T Consensus       157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~  193 (397)
T 1d2e_A          157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (397)
T ss_dssp             TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence              5899999999764          777777776654

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.82  E-value=5.3e-22  Score=165.34  Aligned_cols=152  Identities=19%  Similarity=0.250  Sum_probs=107.0

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      ..+|+|+|..++|||||+++|.+..+.....++.+.+.....+.+++  ..+.||||||++.|..++...+..+|++|+|
T Consensus         4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV   81 (501)
T 1zo1_I            4 APVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVLV   81 (501)
T ss_dssp             CCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence            37899999999999999999988655444434444333333444455  4789999999999999998889999999999


Q ss_pred             EeCCCH---hHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHH---HHHHHHhC--CeEEEEecCCCCCH
Q 027949           95 YDVTDE---SSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKG---QALADEYG--IKFFETSAKTNLNV  166 (216)
Q Consensus        95 ~d~~~~---~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~---~~~~~~~~--~~~~~~Sa~~~~gi  166 (216)
                      +|+++.   ++...+    ..+..   .+.|+++++||+|+.+.........+   ..+...++  ++++++||++|.|+
T Consensus        82 Vda~~g~~~qT~e~l----~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI  154 (501)
T 1zo1_I           82 VAADDGVMPQTIEAI----QHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGI  154 (501)
T ss_dssp             EETTTBSCTTTHHHH----HHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTC
T ss_pred             eecccCccHHHHHHH----HHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCc
Confidence            999873   333332    22222   36899999999999643211100000   00112222  68999999999999


Q ss_pred             HHHHHHHHH
Q 027949          167 EEVFFSIAR  175 (216)
Q Consensus       167 ~~l~~~l~~  175 (216)
                      ++++++|..
T Consensus       155 ~eLle~I~~  163 (501)
T 1zo1_I          155 DELLDAILL  163 (501)
T ss_dssp             TTHHHHTTT
T ss_pred             chhhhhhhh
Confidence            999999864

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.82  E-value=3e-20  Score=150.26  Aligned_cols=147  Identities=11%  Similarity=0.080  Sum_probs=107.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (216)
                      +|+++|.+++|||||+++|+        ..+.+.+.....+.+++  ..+.+|||||++.|.......++.+|++|+|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            99999999999999999998        23333344444455555  579999999999887777777899999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHHhcCCCCcE-EEEEe-CCCCCCCCCccC--hHHHHHHHHHhC---CeEEE--EecCC---CC
Q 027949           97 VTDESSFNNIRNWIRNIEQHASDNVNK-ILVGN-KADMDESKRAVP--TSKGQALADEYG---IKFFE--TSAKT---NL  164 (216)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~n-K~Dl~~~~~~~~--~~~~~~~~~~~~---~~~~~--~Sa~~---~~  164 (216)
                       .. ..+.....++..+...   +.|. ++++| |+|+ +. ....  .+++..++...+   +++++  +||++   +.
T Consensus        93 -~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~-~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~  165 (370)
T 2elf_A           93 -PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-HM-HAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFE  165 (370)
T ss_dssp             -TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CH-HHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTT
T ss_pred             -CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CH-HHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCC
Confidence             43 3334445555444433   5677 88899 9998 42 1111  244555554443   69999  99999   99


Q ss_pred             CHHHHHHHHHHHHHHH
Q 027949          165 NVEEVFFSIARDIKQR  180 (216)
Q Consensus       165 gi~~l~~~l~~~i~~~  180 (216)
                      |+++++++|.+.+...
T Consensus       166 gi~~L~~~l~~~~~~~  181 (370)
T 2elf_A          166 GVDELKARINEVAEKI  181 (370)
T ss_dssp             THHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhhcccc
Confidence            9999999999887653

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.82  E-value=5.7e-21  Score=159.11  Aligned_cols=157  Identities=17%  Similarity=0.098  Sum_probs=92.3

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcC--CCCC-----------------------------ccccceeeeEEEEEEEEC
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDG--SFTT-----------------------------SFITTIGIDFKIRTIELD   60 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~   60 (216)
                      ....++|+++|..++|||||+++|+..  .+..                             +...+.+.+.....+.++
T Consensus        40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~  119 (467)
T 1r5b_A           40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE  119 (467)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred             CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence            356799999999999999999999752  1110                             011222333333345555


Q ss_pred             CeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHh---HHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCC
Q 027949           61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SFNNIRNWIRNIEQHASDNVN-KILVGNKADMDESK  136 (216)
Q Consensus        61 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~  136 (216)
                      +  ..+.||||||++.|.......+..+|++|+|+|+++..   +|....++...+......+.| ++||+||+|+.+..
T Consensus       120 ~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~  197 (467)
T 1r5b_A          120 H--RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQ  197 (467)
T ss_dssp             S--EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCS
T ss_pred             C--eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcc
Confidence            5  68899999999999888888889999999999999863   221111122112111122677 89999999985421


Q ss_pred             C-----ccChHHHHHHHHHh-------CCeEEEEecCCCCCHHHHH
Q 027949          137 R-----AVPTSKGQALADEY-------GIKFFETSAKTNLNVEEVF  170 (216)
Q Consensus       137 ~-----~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi~~l~  170 (216)
                      .     .....++..++...       +++++++||++|.|+++++
T Consensus       198 ~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          198 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             ccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence            1     11223456666655       3579999999999998876

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.81  E-value=7.6e-21  Score=158.02  Aligned_cols=151  Identities=17%  Similarity=0.112  Sum_probs=103.9

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcC--CCCC-----------------------------ccccceeeeEEEEEEEECCe
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDG--SFTT-----------------------------SFITTIGIDFKIRTIELDGK   62 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~   62 (216)
                      ..++|+++|.+++|||||+++|++.  .+..                             +...+.+.+.....+..++ 
T Consensus         6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~-   84 (458)
T 1f60_A            6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK-   84 (458)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS-
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC-
Confidence            4699999999999999999999864  1110                             0012334444444455555 


Q ss_pred             EEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhH---HH---HHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCC
Q 027949           63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS---FN---NIRNWIRNIEQHASDNVN-KILVGNKADMDES  135 (216)
Q Consensus        63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~  135 (216)
                       ..+.||||||++.|.......+..+|++|+|+|+++...   |.   .....+..+..   .+.| ++||+||+|+.+.
T Consensus        85 -~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~~  160 (458)
T 1f60_A           85 -YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVKW  160 (458)
T ss_dssp             -EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGTT
T ss_pred             -ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEccccccC
Confidence             689999999999988888888999999999999987632   21   22222222222   2455 8999999998631


Q ss_pred             CC---ccChHHHHHHHHHhC-----CeEEEEecCCCCCHHHH
Q 027949          136 KR---AVPTSKGQALADEYG-----IKFFETSAKTNLNVEEV  169 (216)
Q Consensus       136 ~~---~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l  169 (216)
                      ..   ....+++..++..++     ++++++||++|.|++++
T Consensus       161 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          161 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            11   122344556666665     68999999999999765

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.81  E-value=1e-19  Score=136.10  Aligned_cols=158  Identities=16%  Similarity=0.176  Sum_probs=98.9

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccc----------ccccc
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTIT   81 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~   81 (216)
                      .....+|+|+|++|||||||+++|++..+.....++.+.......+.+++   .+.+||+||...          +....
T Consensus        23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~   99 (210)
T 1pui_A           23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL   99 (210)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence            34458999999999999999999998764333344444333333444433   467899999742          22222


Q ss_pred             cccc---ccccEEEEEEeCCCHhHHHH--HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-ccChHHHHHHHHHhC--C
Q 027949           82 TAYY---RGAMGILLVYDVTDESSFNN--IRNWIRNIEQHASDNVNKILVGNKADMDESKR-AVPTSKGQALADEYG--I  153 (216)
Q Consensus        82 ~~~~---~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~--~  153 (216)
                      ..++   +.++++++++|+.++.+...  +..|+   ..   .+.|+++|+||+|+.+... ......+..++...+  +
T Consensus       100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~  173 (210)
T 1pui_A          100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---VD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV  173 (210)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---HH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred             HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHH---HH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCC
Confidence            2333   46899999999988654332  22232   21   2689999999999754211 111344555555554  5


Q ss_pred             eEEEEecCCCCCHHHHHHHHHHHHH
Q 027949          154 KFFETSAKTNLNVEEVFFSIARDIK  178 (216)
Q Consensus       154 ~~~~~Sa~~~~gi~~l~~~l~~~i~  178 (216)
                      .++++||+++.|+++++++|.+.+.
T Consensus       174 ~~~~~Sal~~~~~~~l~~~l~~~~~  198 (210)
T 1pui_A          174 QVETFSSLKKQGVDKLRQKLDTWFS  198 (210)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred             ceEEEeecCCCCHHHHHHHHHHHHh
Confidence            7899999999999999999988654

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.80  E-value=5.1e-20  Score=157.57  Aligned_cols=153  Identities=16%  Similarity=0.103  Sum_probs=104.2

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCcc-------------------------------ccceeeeEEEEEEEECC
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSF-------------------------------ITTIGIDFKIRTIELDG   61 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~   61 (216)
                      ...++|+|+|.+|+|||||+++|++.......                               .++.+.+.....+...+
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~  244 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  244 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence            45689999999999999999999876322111                               13444444455555555


Q ss_pred             eEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHH------HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027949           62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF------NNIRNWIRNIEQHASDNVNKILVGNKADMDES  135 (216)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  135 (216)
                        +.+.||||||++.|.......++.+|++|+|+|++++...      ......+..+...  ...|++||+||+|+.+.
T Consensus       245 --~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l--gi~~iIVVvNKiDl~~~  320 (611)
T 3izq_1          245 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDW  320 (611)
T ss_dssp             --CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT--TCCEEEEEEECTTTTTT
T ss_pred             --ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc--CCCeEEEEEecccccch
Confidence              6889999999999988888899999999999999875310      1111111112211  12458999999998652


Q ss_pred             CCc---cChHHHHHHHHHhC-----CeEEEEecCCCCCHHHH
Q 027949          136 KRA---VPTSKGQALADEYG-----IKFFETSAKTNLNVEEV  169 (216)
Q Consensus       136 ~~~---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l  169 (216)
                      ...   .....+..++...+     ++++++||++|.|++++
T Consensus       321 ~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          321 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             hHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            111   11233444444444     58999999999999977

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.80  E-value=3.1e-20  Score=158.43  Aligned_cols=151  Identities=20%  Similarity=0.174  Sum_probs=81.9

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCC-------------------------------CCCccccceeeeEEEEEEEEC
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGS-------------------------------FTTSFITTIGIDFKIRTIELD   60 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~   60 (216)
                      ....++|+|+|.+++|||||+++|+...                               ...+..++.+.+.....+..+
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~  253 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD  253 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence            4567999999999999999999996421                               011113344444444444444


Q ss_pred             CeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHh---HH---HHHHHHHHHHHHhcCCCCc-EEEEEeCCCCC
Q 027949           61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SF---NNIRNWIRNIEQHASDNVN-KILVGNKADMD  133 (216)
Q Consensus        61 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~  133 (216)
                      +  ..+.||||||+..|.......+..+|++|+|+|++++.   .+   ......+..+...   +.| ++||+||+|+.
T Consensus       254 ~--~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~iIvviNKiDl~  328 (592)
T 3mca_A          254 K--KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISEIVVSVNKLDLM  328 (592)
T ss_dssp             -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCCEEEEEECGGGG
T ss_pred             C--eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCeEEEEEeccccc
Confidence            4  78899999999999888888899999999999998532   11   1111111222222   555 89999999986


Q ss_pred             CCCCcc---ChHHHHHHH-HHhC-----CeEEEEecCCCCCHH
Q 027949          134 ESKRAV---PTSKGQALA-DEYG-----IKFFETSAKTNLNVE  167 (216)
Q Consensus       134 ~~~~~~---~~~~~~~~~-~~~~-----~~~~~~Sa~~~~gi~  167 (216)
                      +.....   ...++..+. ...+     ++++++||++|.|++
T Consensus       329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            422111   123334444 3344     379999999999998

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.79  E-value=5.9e-20  Score=144.70  Aligned_cols=160  Identities=14%  Similarity=0.133  Sum_probs=100.6

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCc------cccce----------------------eee-------------
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTS------FITTI----------------------GID-------------   51 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~------~~~~~----------------------~~~-------------   51 (216)
                      ...++|+|+|.+|+|||||+|+|++..+...      ..++.                      +.+             
T Consensus        24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i  103 (299)
T 2aka_B           24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  103 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence            3458999999999999999999999876421      11220                      000             


Q ss_pred             ----------EEEEEEEECCeEEEEEEEeCCCcc-------------ccccccccccccccEEE-EEEeCCCHhHHHHHH
Q 027949           52 ----------FKIRTIELDGKRIKLQIWDTAGQE-------------RFRTITTAYYRGAMGIL-LVYDVTDESSFNNIR  107 (216)
Q Consensus        52 ----------~~~~~~~~~~~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~~~~~~~  107 (216)
                                .....+...+ ...+.||||||..             .+..+...+++.++.+| +|+|+++..+.....
T Consensus       104 ~g~~~gi~~~~~~~~~~~~~-~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~  182 (299)
T 2aka_B          104 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  182 (299)
T ss_dssp             CSSTTCCCSCCEEEEEEETT-CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred             cccCCCccccceEEEEeCCC-CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence                      0000011110 2578999999964             23445666777888666 799998754433333


Q ss_pred             HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH--hC-CeEEEEecCCCCCHHHHHHHHHHHH
Q 027949          108 NWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADE--YG-IKFFETSAKTNLNVEEVFFSIARDI  177 (216)
Q Consensus       108 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~gi~~l~~~l~~~i  177 (216)
                      .++..+.   ..+.|+++|+||+|+.+... ...+.+......  .+ .+++++||++|.|+++++++|.+.-
T Consensus       183 ~~~~~~~---~~~~~~i~V~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~  251 (299)
T 2aka_B          183 KIAKEVD---PQGQRTIGVITKLDLMDEGT-DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER  251 (299)
T ss_dssp             HHHHHHC---TTCSSEEEEEECGGGSCTTC-CCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred             HHHHHhC---CCCCeEEEEEEccccCCCCc-hHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence            3444332   34789999999999865322 122222210011  13 3688999999999999999998743

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.78  E-value=5e-19  Score=157.70  Aligned_cols=160  Identities=19%  Similarity=0.126  Sum_probs=105.8

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCC-------CC---------CccccceeeeEEEEEEEECCeEEEEEEEeCCCcc
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGS-------FT---------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   75 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~-------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (216)
                      ....++|+++|.+++|||||+++|++..       +.         .+...+.+.+..  .+.++.....+.||||||++
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva--~v~f~~~~~kI~IIDTPGHe  370 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTS--HVEYDTPTRHYAHVDCPGHA  370 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCS--CEEEECSSCEEEEEECCCHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEE--EEEEcCCCEEEEEEECCChH
Confidence            3456999999999999999999998631       00         001112222221  22233333688999999999


Q ss_pred             ccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCc--cChHHHHHHHHHhC
Q 027949           76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KILVGNKADMDESKRA--VPTSKGQALADEYG  152 (216)
Q Consensus        76 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~  152 (216)
                      .|.......+..+|++|+|+|+++.... ....++..+...   +.| ++||+||+|+.+....  ...+++..++...+
T Consensus       371 dF~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G  446 (1289)
T 3avx_A          371 DYVKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYD  446 (1289)
T ss_dssp             HHHHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcc
Confidence            9888888888999999999999885322 223333334332   678 7899999998642111  12245666666665


Q ss_pred             -----CeEEEEecCCC--------CCHHHHHHHHHHHH
Q 027949          153 -----IKFFETSAKTN--------LNVEEVFFSIARDI  177 (216)
Q Consensus       153 -----~~~~~~Sa~~~--------~gi~~l~~~l~~~i  177 (216)
                           ++++++||++|        .|+++++++|.+.+
T Consensus       447 ~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I  484 (1289)
T 3avx_A          447 FPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI  484 (1289)
T ss_dssp             SCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred             ccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence                 68999999999        45777777766543

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.78  E-value=1.1e-18  Score=142.53  Aligned_cols=161  Identities=13%  Similarity=0.146  Sum_probs=111.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccc----cccccccc---ccccc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTAY---YRGAM   89 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~~d   89 (216)
                      .|+|+|++|||||||+++|++........+..+.......+..++ ...+.+||+||...    +..+...+   +..++
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~  237 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR  237 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence            478999999999999999998754222223333344455555553 24678999999743    22222233   34689


Q ss_pred             EEEEEEeCCCHhHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHH
Q 027949           90 GILLVYDVTDESSFNNIRNWIRNIEQHAS--DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE  167 (216)
Q Consensus        90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  167 (216)
                      .+++++|++ ...+..+..+...+.....  ...|.++|+||+|+...   ...+.+.......++.++.+||++++|++
T Consensus       238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~---~~~~~l~~~l~~~g~~vi~iSA~~g~gi~  313 (416)
T 1udx_A          238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE---EAVKALADALAREGLAVLPVSALTGAGLP  313 (416)
T ss_dssp             EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH---HHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred             hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH---HHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence            999999997 4555666666555544321  14789999999998542   23344445555567899999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 027949          168 EVFFSIARDIKQRLA  182 (216)
Q Consensus       168 ~l~~~l~~~i~~~~~  182 (216)
                      +++++|.+.+.+...
T Consensus       314 eL~~~i~~~l~~~~~  328 (416)
T 1udx_A          314 ALKEALHALVRSTPP  328 (416)
T ss_dssp             HHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHhccc
Confidence            999999999876543

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.78  E-value=3.4e-18  Score=132.34  Aligned_cols=119  Identities=18%  Similarity=0.183  Sum_probs=85.1

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccc------
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR------   86 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~------   86 (216)
                      ..++|+|+|.+|+|||||+++|++.... ....+..+.......+.+++  ..+.||||||+..+......+++      
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l  112 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGFL  112 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence            4699999999999999999999998753 22333444455556667777  68999999999877655444443      


Q ss_pred             ---cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCC--CcEEEEEeCCCCCC
Q 027949           87 ---GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN--VNKILVGNKADMDE  134 (216)
Q Consensus        87 ---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~p~ivv~nK~Dl~~  134 (216)
                         .+|++++|++++..........|+..+......+  .|+++|+||+|+.+
T Consensus       113 ~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~  165 (262)
T 3def_A          113 VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP  165 (262)
T ss_dssp             TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred             hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence               7899999999876542122235666665544322  48999999999854

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.75  E-value=1e-17  Score=145.38  Aligned_cols=118  Identities=20%  Similarity=0.210  Sum_probs=84.7

Q ss_pred             CCCceEEEEEEcCCCCcHHHHHHHHHcCC--C------CC----------ccccceeeeEEEEEEEECCeEEEEEEEeCC
Q 027949           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGS--F------TT----------SFITTIGIDFKIRTIELDGKRIKLQIWDTA   72 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~--~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   72 (216)
                      ..+...+|+|+|.+|+|||||+++|+...  +      ..          ......+.......+.+.+  +.++|||||
T Consensus         8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liDTP   85 (691)
T 1dar_A            8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDTP   85 (691)
T ss_dssp             CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEECCC
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEECc
Confidence            34567999999999999999999998421  1      00          0011222333344455565  789999999


Q ss_pred             CccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949           73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE  134 (216)
Q Consensus        73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (216)
                      |+..|...+..+++.+|++|+|+|+++.........|.. +..   .+.|+++|+||+|+..
T Consensus        86 G~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           86 GHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             SSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred             CccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence            999888888889999999999999998776666555543 332   2789999999999864

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.75  E-value=8.1e-18  Score=146.09  Aligned_cols=164  Identities=17%  Similarity=0.193  Sum_probs=106.0

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCC-ccccceeeeEE-------EEEEEE--------------------------
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFK-------IRTIEL--------------------------   59 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~-------~~~~~~--------------------------   59 (216)
                      ..++|+|+|.+|+|||||+|+|++..+.. ...+++..-..       ..++.+                          
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            35899999999999999999999887542 22232210000       001111                          


Q ss_pred             --------------------CCeE--EEEEEEeCCCccc---cccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHH
Q 027949           60 --------------------DGKR--IKLQIWDTAGQER---FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE  114 (216)
Q Consensus        60 --------------------~~~~--~~~~i~D~~G~~~---~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~  114 (216)
                                          ....  ..+.||||||...   .......+++.+|++|+|+|++++.+......|...+.
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~  227 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK  227 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence                                1000  2588999999654   23455677889999999999998877666655544433


Q ss_pred             HhcCCCCcEEEEEeCCCCCCCCC--ccChH-------HHHH-----HHHH--------hCCeEEEEecC-----------
Q 027949          115 QHASDNVNKILVGNKADMDESKR--AVPTS-------KGQA-----LADE--------YGIKFFETSAK-----------  161 (216)
Q Consensus       115 ~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~-------~~~~-----~~~~--------~~~~~~~~Sa~-----------  161 (216)
                      .   .+.|+++|+||+|+.+...  ....+       ....     +...        ...+++++||+           
T Consensus       228 ~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~  304 (695)
T 2j69_A          228 G---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ  304 (695)
T ss_dssp             T---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred             h---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence            2   2678999999999854220  11100       1111     1111        12479999999           


Q ss_pred             ---CCCCHHHHHHHHHHHHHHH
Q 027949          162 ---TNLNVEEVFFSIARDIKQR  180 (216)
Q Consensus       162 ---~~~gi~~l~~~l~~~i~~~  180 (216)
                         ++.|+++++.+|.+.+...
T Consensus       305 ~~~~~~Gi~~L~~~L~~~l~~~  326 (695)
T 2j69_A          305 ADLDGTGFPKFMDSLNTFLTRE  326 (695)
T ss_dssp             CCCTTSSHHHHHHHHHHHHHHT
T ss_pred             hhhhccCHHHHHHHHHHHHHHh
Confidence               9999999999999877653

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.75  E-value=2.8e-17  Score=127.74  Aligned_cols=119  Identities=18%  Similarity=0.154  Sum_probs=81.7

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccc--------
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA--------   83 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~--------   83 (216)
                      ...++|+|+|.+|+|||||+|+|++..+. ....++.+.......+..++  ..+.+|||||...+......        
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~  114 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF  114 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHH
Confidence            34699999999999999999999988753 22223333334444455566  78999999998765533221        


Q ss_pred             -ccccccEEEEEEeCCCHhHHHH-HHHHHHHHHHhcCCC--CcEEEEEeCCCCCC
Q 027949           84 -YYRGAMGILLVYDVTDESSFNN-IRNWIRNIEQHASDN--VNKILVGNKADMDE  134 (216)
Q Consensus        84 -~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~--~p~ivv~nK~Dl~~  134 (216)
                       ..+.+|++|||+|++.. ++.. ...|+..+.......  .|+++|+||+|+.+
T Consensus       115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~  168 (270)
T 1h65_A          115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP  168 (270)
T ss_dssp             TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred             hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence             13468999999998653 2332 235666665554322  69999999999864

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.74  E-value=9.3e-19  Score=141.45  Aligned_cols=161  Identities=12%  Similarity=0.105  Sum_probs=104.4

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEE----------------------------------------
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFK----------------------------------------   53 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~----------------------------------------   53 (216)
                      ...+|+|+|.+|||||||+++|++..+........+....                                        
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            3459999999999999999999997763222211110000                                        


Q ss_pred             --------------EEEEEECCeEEEEEEEeCCCcccc-------------ccccccccccccEEEEEEeCCCHhHHHHH
Q 027949           54 --------------IRTIELDGKRIKLQIWDTAGQERF-------------RTITTAYYRGAMGILLVYDVTDESSFNNI  106 (216)
Q Consensus        54 --------------~~~~~~~~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~  106 (216)
                                    ...+... ....+.+|||||...+             ..+...+++++|++|++++..+.+...  
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~-~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--  189 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSP-NVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--  189 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEET-TSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--
T ss_pred             HhcCCCCCcccceEEEEEeCC-CCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--
Confidence                          0011111 1135889999997765             445677889999999999875433221  


Q ss_pred             HHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 027949          107 RNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIK  178 (216)
Q Consensus       107 ~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  178 (216)
                      ..|+..+......+.|+++|+||+|+.+. .....+.+..+...++.+|+.++++.+.++++.+.++.....
T Consensus       190 ~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~~~~  260 (360)
T 3t34_A          190 SDAIKISREVDPSGDRTFGVLTKIDLMDK-GTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAARKR  260 (360)
T ss_dssp             CHHHHHHHHSCTTCTTEEEEEECGGGCCT-TCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHhcccCCCEEEEEeCCccCCC-cccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHHHHH
Confidence            23334444444457899999999998653 223344444444556789999999999988887766544433

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.74  E-value=3.8e-17  Score=141.33  Aligned_cols=115  Identities=14%  Similarity=0.165  Sum_probs=82.5

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCcc------------------ccceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSF------------------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   74 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   74 (216)
                      ....+|+|+|..|+|||||+++|++.......                  ....+.......+.+.+  +.++||||||+
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~~nliDTpG~   84 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGY   84 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCS
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCC--EEEEEEeCCCc
Confidence            34578999999999999999999853221000                  11223334444455555  78999999999


Q ss_pred             cccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027949           75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD  133 (216)
Q Consensus        75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  133 (216)
                      ..+...+..+++.+|++++|+|+.+...... ..++..+...   +.|+++|+||+|+.
T Consensus        85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~~---~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           85 GDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAERL---GLPRMVVVTKLDKG  139 (665)
T ss_dssp             GGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCEEEEEECGGGC
T ss_pred             cchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHHc---cCCEEEEecCCchh
Confidence            9988888889999999999999877543322 2344444332   68999999999985

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.74  E-value=2e-17  Score=139.37  Aligned_cols=116  Identities=16%  Similarity=0.113  Sum_probs=80.0

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCC----------------------ccccceeeeEEEEEEEECCeEEEEEEEe
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTT----------------------SFITTIGIDFKIRTIELDGKRIKLQIWD   70 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D   70 (216)
                      ....+|+|+|.+|+|||||+++|+...-..                      ....+.+.......+.+++  +.+.|||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liD   88 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLD   88 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEEC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEE
Confidence            346899999999999999999998632100                      0011111222233455566  7899999


Q ss_pred             CCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949           71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE  134 (216)
Q Consensus        71 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (216)
                      |||+..|......+++.+|++|+|+|+.+..... ...++..+.   ..+.|+++|+||+|+..
T Consensus        89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~~---~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVTR---LRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHHT---TTTCCEEEEEECTTSCC
T ss_pred             CCCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHHH---HcCCCEEEEEcCcCCcc
Confidence            9999988888888899999999999998754322 222222222   23789999999999854

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.74  E-value=2e-17  Score=143.65  Aligned_cols=117  Identities=19%  Similarity=0.158  Sum_probs=84.4

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcC--CCCC----------------ccccceeeeEEEEEEEECCeEEEEEEEeCCC
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDG--SFTT----------------SFITTIGIDFKIRTIELDGKRIKLQIWDTAG   73 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~--~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   73 (216)
                      .+...+|+|+|.+|+|||||+++|+..  .+..                ...+..+.......+.+++  +.++||||||
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG   84 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPG   84 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcC
Confidence            456799999999999999999999852  2110                0011222233344556666  7899999999


Q ss_pred             ccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949           74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE  134 (216)
Q Consensus        74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (216)
                      +..+...+..+++.+|++|+|+|+++.........|.. +...   +.|+++|+||+|+..
T Consensus        85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~~---~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATTY---GVPRIVFVNKMDKLG  141 (693)
T ss_dssp             CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHHT---TCCEEEEEECTTSTT
T ss_pred             CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHHc---CCCEEEEEECCCccc
Confidence            99888888888999999999999998766655544443 3332   689999999999864

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.73  E-value=9.2e-19  Score=138.02  Aligned_cols=163  Identities=23%  Similarity=0.326  Sum_probs=85.1

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcC-CCCCccc--------cceeeeEEEEEEEECCeEEEEEEEeCCCc-------c
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDG-SFTTSFI--------TTIGIDFKIRTIELDGKRIKLQIWDTAGQ-------E   75 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~   75 (216)
                      ....++|+|+|++|+|||||+++|.+. .++....        ++.........++.++....+.+||++|.       +
T Consensus        15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e   94 (301)
T 2qnr_A           15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD   94 (301)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence            345689999999999999999999875 3332221        11111111222333444578999999997       4


Q ss_pred             ccccccc-------ccccc-------------ccEEEEEEeCCCHhHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949           76 RFRTITT-------AYYRG-------------AMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDE  134 (216)
Q Consensus        76 ~~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (216)
                      .+..+..       .+++.             +++++|+.+.+. .+++... .++..+    ....|+++|+||.|+..
T Consensus        95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l----~~~~~iilV~~K~Dl~~  169 (301)
T 2qnr_A           95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAI----HNKVNIVPVIAKADTLT  169 (301)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHH----TTTSCEEEEECCGGGSC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHH----HhcCCEEEEEEeCCCCC
Confidence            4444333       33322             344555555321 1122211 222222    23579999999999854


Q ss_pred             CCC-ccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027949          135 SKR-AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR  180 (216)
Q Consensus       135 ~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  180 (216)
                      ... ....+++..++..++++++++||+++ +++++|.++.+.+.+.
T Consensus       170 ~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~  215 (301)
T 2qnr_A          170 LKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKAS  215 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcC
Confidence            211 12345677888889999999999999 9999999999988653

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.73  E-value=5.9e-18  Score=137.96  Aligned_cols=85  Identities=20%  Similarity=0.218  Sum_probs=48.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEE---------------------ECC-eEEEEEEEeCCC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIE---------------------LDG-KRIKLQIWDTAG   73 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~i~D~~G   73 (216)
                      ++|+|+|.+|+|||||+|+|++........+..+.+.......                     +++ ..+.+.+|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            5899999999999999999998874333334333333333221                     232 247899999999


Q ss_pred             ccc----cccccc---cccccccEEEEEEeCCCH
Q 027949           74 QER----FRTITT---AYYRGAMGILLVYDVTDE  100 (216)
Q Consensus        74 ~~~----~~~~~~---~~~~~~d~~i~v~d~~~~  100 (216)
                      ...    ...+..   ..++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            753    222222   456899999999999874

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.73  E-value=7.8e-17  Score=140.04  Aligned_cols=119  Identities=18%  Similarity=0.117  Sum_probs=83.4

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCC--CCCc----------------cccceeeeEEEEEEEECC-----eEEEEEE
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGS--FTTS----------------FITTIGIDFKIRTIELDG-----KRIKLQI   68 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~--~~~~----------------~~~~~~~~~~~~~~~~~~-----~~~~~~i   68 (216)
                      .+...+|+|+|..|+|||||+++|+...  +...                ...+.+.......+.+++     ..+.++|
T Consensus         7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l   86 (704)
T 2rdo_7            7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI   86 (704)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence            3556899999999999999999997531  1100                011222222333344432     3478999


Q ss_pred             EeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949           69 WDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE  134 (216)
Q Consensus        69 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (216)
                      |||||+..|...+...++.+|++|+|+|+++.........|. .+..   .+.|+++|+||+|+..
T Consensus        87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~---~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR-QANK---YKVPRIAFVNKMDRMG  148 (704)
T ss_pred             EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHHH---cCCCEEEEEeCCCccc
Confidence            999999988888888999999999999999875544443343 2222   3689999999999854

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.72  E-value=1.5e-17  Score=131.97  Aligned_cols=112  Identities=13%  Similarity=0.160  Sum_probs=68.3

Q ss_pred             EEEEEEeCCCccc-------------cccccccccccccEEEEEEeCCCHhHH-HHHHHHHHHHHHhcCCCCcEEEEEeC
Q 027949           64 IKLQIWDTAGQER-------------FRTITTAYYRGAMGILLVYDVTDESSF-NNIRNWIRNIEQHASDNVNKILVGNK  129 (216)
Q Consensus        64 ~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK  129 (216)
                      ..+.+|||||...             +......+++.+|++|+|+|..+.... .....+...+   ...+.|+++|+||
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~---~~~~~~~i~v~NK  207 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITK  207 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEEC
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh---CCCCCcEEEEEcC
Confidence            4689999999753             344556678899999999997432211 1111222222   2347899999999


Q ss_pred             CCCCCCCCccChHHHHHHHHHhCCeEEEEecCC------CCCHHHHHHHHHHHHHH
Q 027949          130 ADMDESKRAVPTSKGQALADEYGIKFFETSAKT------NLNVEEVFFSIARDIKQ  179 (216)
Q Consensus       130 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------~~gi~~l~~~l~~~i~~  179 (216)
                      +|+.+... ...+.+.......+..++++|+..      +.|+++++..+.+.+..
T Consensus       208 ~Dl~~~~~-~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~  262 (315)
T 1jwy_B          208 LDLMDKGT-DAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN  262 (315)
T ss_dssp             TTSSCSSC-CCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred             cccCCcch-HHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence            99865332 122222211112225666666543      68999999998887754

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.70  E-value=3.1e-17  Score=134.17  Aligned_cols=162  Identities=17%  Similarity=0.221  Sum_probs=80.1

Q ss_pred             CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCcc--------ccceeeeEEEEEEEECCeEEEEEEEeCCCccccc----
Q 027949           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSF--------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR----   78 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----   78 (216)
                      -....++|+|+|++|+|||||++.|++..+....        .++.........+...+....+.+||++|...+.    
T Consensus        27 l~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~  106 (418)
T 2qag_C           27 KRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN  106 (418)
T ss_dssp             C-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC----------
T ss_pred             ecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchh
Confidence            3455688999999999999999999987653111        1122211111122223434578999999975431    


Q ss_pred             ---c------------------ccccccccccEEEEEEeCCCH-hHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027949           79 ---T------------------ITTAYYRGAMGILLVYDVTDE-SSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDES  135 (216)
Q Consensus        79 ---~------------------~~~~~~~~~d~~i~v~d~~~~-~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  135 (216)
                         .                  +...++.++++.+++|..... .++.... .|+..+.    .+.|+++|+||+|+...
T Consensus       107 ~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~  182 (418)
T 2qag_C          107 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTP  182 (418)
T ss_dssp             -CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccH
Confidence               1                  123345555443334333321 2233332 4555553    26899999999998542


Q ss_pred             CCccCh--HHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Q 027949          136 KRAVPT--SKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI  177 (216)
Q Consensus       136 ~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  177 (216)
                       .....  ..+..++..++++++++|+.++.+++++|..|.+.+
T Consensus       183 -~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i  225 (418)
T 2qag_C          183 -EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  225 (418)
T ss_dssp             -HHHHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred             -HHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence             22222  566777788899999999999999998887776543

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.70  E-value=1e-17  Score=132.04  Aligned_cols=134  Identities=22%  Similarity=0.210  Sum_probs=106.3

Q ss_pred             HHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHh-HHHHHH
Q 027949           30 CLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES-SFNNIR  107 (216)
Q Consensus        30 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~  107 (216)
                      +++.++..+.+. ..+.|+.+..+ ...+..++   .+.+||+  ++.++.++..+++++|++|+|||++++. ++..+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~-~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRV-EYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEE-EEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEE-EEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            577788878887 77888888333 33332233   6899999  8889999999999999999999999997 688888


Q ss_pred             HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC--CeEEEEecCCCCCHHHHHHHHHH
Q 027949          108 NWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG--IKFFETSAKTNLNVEEVFFSIAR  175 (216)
Q Consensus       108 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~  175 (216)
                      .|+..+..   .+.|+++|+||+||.+.. .  .++...++..++  ++++++||++|.|++++|.++..
T Consensus       106 ~~l~~~~~---~~~piilv~NK~DL~~~~-~--v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          106 KFLVLAEK---NELETVMVINKMDLYDED-D--LRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             HHHHHHHH---TTCEEEEEECCGGGCCHH-H--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred             HHHHHHHH---CCCCEEEEEeHHHcCCch-h--HHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence            89887755   378999999999986421 1  244667777777  89999999999999999998753

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.68  E-value=5.4e-17  Score=122.25  Aligned_cols=156  Identities=19%  Similarity=0.131  Sum_probs=93.7

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeE--------------EEEEEEE----------------CCeE
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDF--------------KIRTIEL----------------DGKR   63 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~--------------~~~~~~~----------------~~~~   63 (216)
                      ...+|+|+|.+|+|||||+++|+..............+.              ....+..                ....
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            347899999999999999999986522111111110000              0011111                0012


Q ss_pred             EEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHH
Q 027949           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK  143 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  143 (216)
                      +.+.+|||+|.....   ..+....+.+++|+|+.+...  ....+...   .   +.|+++|+||+|+.+. .....+.
T Consensus       109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~--~~~~~~~~---~---~~~~iiv~NK~Dl~~~-~~~~~~~  176 (221)
T 2wsm_A          109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDD--VVEKHPEI---F---RVADLIVINKVALAEA-VGADVEK  176 (221)
T ss_dssp             CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTT--HHHHCHHH---H---HTCSEEEEECGGGHHH-HTCCHHH
T ss_pred             CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcch--hhhhhhhh---h---hcCCEEEEecccCCcc-hhhHHHH
Confidence            567889998851111   111125678999999876532  11111111   1   4788999999998531 1134455


Q ss_pred             HHHHHHHh--CCeEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 027949          144 GQALADEY--GIKFFETSAKTNLNVEEVFFSIARDIKQRL  181 (216)
Q Consensus       144 ~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  181 (216)
                      ....+...  +++++++||++|.|+++++++|.+.+....
T Consensus       177 ~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~  216 (221)
T 2wsm_A          177 MKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS  216 (221)
T ss_dssp             HHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred             HHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence            55555554  379999999999999999999998876543

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.66  E-value=2.7e-18  Score=138.35  Aligned_cols=157  Identities=16%  Similarity=0.151  Sum_probs=92.5

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCcc------cccee----------------------e----------------
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSF------ITTIG----------------------I----------------   50 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~------~~~~~----------------------~----------------   50 (216)
                      .++|+|+|.+|+|||||+|+|++..+.+..      .|+..                      .                
T Consensus        31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g  110 (353)
T 2x2e_A           31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  110 (353)
T ss_dssp             CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence            479999999999999999999998763211      12200                      0                


Q ss_pred             -----eEEEEEEEECC-eEEEEEEEeCCCcc-------------cccccccccccccc-EEEEEEeCCCHhHHHHHHHHH
Q 027949           51 -----DFKIRTIELDG-KRIKLQIWDTAGQE-------------RFRTITTAYYRGAM-GILLVYDVTDESSFNNIRNWI  110 (216)
Q Consensus        51 -----~~~~~~~~~~~-~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~~~~~~~~~~  110 (216)
                           ......+.+.+ ....+.||||||..             .+..+...+++..+ ++++|++++....-.....++
T Consensus       111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~  190 (353)
T 2x2e_A          111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVA  190 (353)
T ss_dssp             TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHH
T ss_pred             cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHH
Confidence                 00000011100 02578999999963             23345556665554 555567766532212222233


Q ss_pred             HHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHH--HHHHhC-CeEEEEecCCCCCHHHHHHHHHH
Q 027949          111 RNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQA--LADEYG-IKFFETSAKTNLNVEEVFFSIAR  175 (216)
Q Consensus       111 ~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~--~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~  175 (216)
                         ....+.+.|+++|+||+|+.+.... ..+....  +....+ .+++.+||+++.|++++++++.+
T Consensus       191 ---~~~~~~~~~~i~V~NK~Dl~~~~~~-~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          191 ---KEVDPQGQRTIGVITKLDLMDEGTD-ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             ---HHHCTTCTTEEEEEECGGGSCTTCC-CHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             ---HHhCcCCCceEEEeccccccCcchh-HHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence               3333457899999999998653221 1111110  011123 36788999999999999999876

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.65  E-value=7.3e-17  Score=130.07  Aligned_cols=106  Identities=17%  Similarity=0.147  Sum_probs=69.7

Q ss_pred             EEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cChH
Q 027949           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA-VPTS  142 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~  142 (216)
                      +.+.||||||...   .....+..+|++++|+|....+....+...   +     ...|+++|+||+|+.+.... ....
T Consensus       172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~---~-----~~~p~ivVlNK~Dl~~~~~~~~~~~  240 (355)
T 3p32_A          172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG---V-----LELADIVVVNKADGEHHKEARLAAR  240 (355)
T ss_dssp             CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT---S-----GGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred             CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh---H-----hhcCCEEEEECCCCcChhHHHHHHH
Confidence            6789999999532   233345789999999998765443222110   1     13588999999998532110 1111


Q ss_pred             HHHHHHHHh-------CCeEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027949          143 KGQALADEY-------GIKFFETSAKTNLNVEEVFFSIARDIKQR  180 (216)
Q Consensus       143 ~~~~~~~~~-------~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  180 (216)
                      .........       +.+++++||++|.|+++++++|.+.+...
T Consensus       241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~~  285 (355)
T 3p32_A          241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQVL  285 (355)
T ss_dssp             HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence            222222112       46899999999999999999999988663

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.65  E-value=2.8e-15  Score=120.14  Aligned_cols=84  Identities=19%  Similarity=0.179  Sum_probs=58.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeE---------------EEEEEEeCCCccccc--
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQERFR--   78 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~~--   78 (216)
                      ++|+|+|.+|+|||||+|+|++..+.....++.+.+.....+.+.+..               ..+.+||+||...+.  
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~   82 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence            789999999999999999999977544344444444444455555421               478999999986543  


Q ss_pred             --cccc---cccccccEEEEEEeCCC
Q 027949           79 --TITT---AYYRGAMGILLVYDVTD   99 (216)
Q Consensus        79 --~~~~---~~~~~~d~~i~v~d~~~   99 (216)
                        .+..   ..++.+|++++|+|+++
T Consensus        83 ~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           83 GEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             cchHHHHHHHHHHhcCeEEEEEecCC
Confidence              2322   34689999999999986

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.63  E-value=3.8e-15  Score=125.99  Aligned_cols=115  Identities=14%  Similarity=0.098  Sum_probs=83.8

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCC----------------------CCCccccceeeeEEEEEEEECCeEEEEEEEeC
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGS----------------------FTTSFITTIGIDFKIRTIELDGKRIKLQIWDT   71 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~   71 (216)
                      ..=+|+|+|..++|||||..+|+...                      ...+...+.++......+.+++  +.++|+||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDT  107 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDT  107 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeC
Confidence            34579999999999999999996311                      0122334444455556777888  78999999


Q ss_pred             CCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949           72 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE  134 (216)
Q Consensus        72 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (216)
                      ||+..|.......++-+|++|+|+|+...-.......|.. +..+   ++|.++++||+|...
T Consensus       108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~-a~~~---~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDV-CRMR---ATPVMTFVNKMDREA  166 (548)
T ss_dssp             CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHH-HHHT---TCCEEEEEECTTSCC
T ss_pred             CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHH-HHHh---CCceEEEEecccchh
Confidence            9999999989999999999999999988655455444533 3333   799999999999754

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.60  E-value=3e-16  Score=126.06  Aligned_cols=103  Identities=13%  Similarity=0.100  Sum_probs=62.5

Q ss_pred             EEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHH
Q 027949           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK  143 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  143 (216)
                      +.+.++||+|....   .......+|++++|+|++.+.....+..   .+     ...|.++|+||+|+.+...  ....
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~--~~~~  233 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVP--ARRI  233 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHH--HHHH
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchh--HHHH
Confidence            57889999996321   2334568999999999987643222211   11     1458899999999843110  0011


Q ss_pred             HHHHHH----------HhCCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 027949          144 GQALAD----------EYGIKFFETSAKTNLNVEEVFFSIARDIKQ  179 (216)
Q Consensus       144 ~~~~~~----------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  179 (216)
                      ...+..          ....+++.+||++|.|+++++++|.+.+..
T Consensus       234 ~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~  279 (349)
T 2www_A          234 QAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL  279 (349)
T ss_dssp             HHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            222211          113578999999999999999999987643

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.59  E-value=3.4e-15  Score=112.71  Aligned_cols=154  Identities=19%  Similarity=0.234  Sum_probs=90.8

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEE------------EEEEEEC-Ce------------------
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFK------------IRTIELD-GK------------------   62 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~------------------   62 (216)
                      ..++|+|+|.+|||||||+++|+...+...+.++...++.            ...+..+ +.                  
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            4589999999999999999999876554433333332221            1111111 10                  


Q ss_pred             -EEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccCh
Q 027949           63 -RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPT  141 (216)
Q Consensus        63 -~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~  141 (216)
                       ...+.++|++|.-..   ...+-...+..+.++|.........  .+...+      ..|.++|+||+|+.+. .....
T Consensus       117 ~~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~~------~~~~iiv~NK~Dl~~~-~~~~~  184 (226)
T 2hf9_A          117 DEIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTIE--KHPGIM------KTADLIVINKIDLADA-VGADI  184 (226)
T ss_dssp             GGCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTTT--TCHHHH------TTCSEEEEECGGGHHH-HTCCH
T ss_pred             CCCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhHh--hhhhHh------hcCCEEEEeccccCch-hHHHH
Confidence             013455555552110   0011122345667777532211100  000111      4688999999998541 22345


Q ss_pred             HHHHHHHHHh--CCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 027949          142 SKGQALADEY--GIKFFETSAKTNLNVEEVFFSIARDIKQ  179 (216)
Q Consensus       142 ~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  179 (216)
                      +....++...  +++++++||++|.|++++|++|.+.+..
T Consensus       185 ~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          185 KKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             HHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            5666666654  4799999999999999999999987754

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.59  E-value=2.9e-14  Score=114.89  Aligned_cols=156  Identities=16%  Similarity=0.154  Sum_probs=103.9

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc-------cccccc
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-------ITTAYY   85 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~   85 (216)
                      +...+|+++|.||||||||+|+|++........++.+.+.....+.+.+  ..+.++|+||.-.-..       .....+
T Consensus        70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i  147 (376)
T 4a9a_A           70 TGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVA  147 (376)
T ss_dssp             CSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHH
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHH
Confidence            3457999999999999999999999887767778888899999999998  6788999999642211       122345


Q ss_pred             ccccEEEEEEeCCCHhHHH-HHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-------CCCccChHHHHHHHHHhCCeEEE
Q 027949           86 RGAMGILLVYDVTDESSFN-NIRNWIRNIEQHASDNVNKILVGNKADMDE-------SKRAVPTSKGQALADEYGIKFFE  157 (216)
Q Consensus        86 ~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-------~~~~~~~~~~~~~~~~~~~~~~~  157 (216)
                      +.+|++++|+|+++|.... .+...+..+.... ...|.++++||.|...       .......++.+.+...+.+.--+
T Consensus       148 ~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l-~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kp  226 (376)
T 4a9a_A          148 RTCNLLFIILDVNKPLHHKQIIEKELEGVGIRL-NKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAE  226 (376)
T ss_dssp             HHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEE-TCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEE
T ss_pred             HhcCccccccccCccHHHHHHHHHHHHHhhHhh-ccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCC
Confidence            7899999999999885322 2222222222111 2578889999999621       11234456666666666543333


Q ss_pred             EecCCCCCHHHHHH
Q 027949          158 TSAKTNLNVEEVFF  171 (216)
Q Consensus       158 ~Sa~~~~gi~~l~~  171 (216)
                      +--..+...+++.+
T Consensus       227 v~~~~nv~eddl~d  240 (376)
T 4a9a_A          227 IAFRCDATVDDLID  240 (376)
T ss_dssp             EEECSCCCHHHHHH
T ss_pred             eeecccCCHHHHHH
Confidence            33344455566543

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.59  E-value=2.8e-15  Score=132.63  Aligned_cols=119  Identities=19%  Similarity=0.197  Sum_probs=85.7

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCC----------------ccccceeeeEEEEEEEE--------------CC
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTT----------------SFITTIGIDFKIRTIEL--------------DG   61 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~--------------~~   61 (216)
                      .+...+|+|+|..|+|||||+++|+...-..                +...+.+.......+.+              ++
T Consensus        16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~   95 (842)
T 1n0u_A           16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG   95 (842)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence            4567899999999999999999998642100                01111122222222222              33


Q ss_pred             eEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949           62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE  134 (216)
Q Consensus        62 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (216)
                      ..+.++||||||+..|...+..+++.+|++|+|+|+.+..++.....|.....    .+.|+++|+||+|+..
T Consensus        96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~~  164 (842)
T 1n0u_A           96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRAL  164 (842)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHHH
T ss_pred             CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcch
Confidence            46899999999999999999999999999999999999877776655554332    2689999999999853

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.57  E-value=6.5e-15  Score=118.61  Aligned_cols=156  Identities=17%  Similarity=0.149  Sum_probs=94.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECC-------------------eEEEEEEEeCCCccc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG-------------------KRIKLQIWDTAGQER   76 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~G~~~   76 (216)
                      ++|+++|.+|+|||||+++|++........+..+.+.......+.+                   ....+.+||+||...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            5789999999999999999998653222222223333333333321                   125789999999865


Q ss_pred             ccc----cc---ccccccccEEEEEEeCCCH----------hHHHHHHHHHH----------------------------
Q 027949           77 FRT----IT---TAYYRGAMGILLVYDVTDE----------SSFNNIRNWIR----------------------------  111 (216)
Q Consensus        77 ~~~----~~---~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~----------------------------  111 (216)
                      ...    +.   ...++.+|++++|+|+++.          +.+.++..+..                            
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~  161 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL  161 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence            432    22   2346899999999999851          11111110000                            


Q ss_pred             -----------HHHHh--------------------cCCCCcEEEEEeCCCC--CCCCCccChHHHHHHHHHhCCeEEEE
Q 027949          112 -----------NIEQH--------------------ASDNVNKILVGNKADM--DESKRAVPTSKGQALADEYGIKFFET  158 (216)
Q Consensus       112 -----------~~~~~--------------------~~~~~p~ivv~nK~Dl--~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (216)
                                 .+...                    .-...|+++++||.|.  .+.......+.++.++...+++++++
T Consensus       162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i  241 (368)
T 2dby_A          162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV  241 (368)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence                       00000                    0113799999999983  22111344567778888889999999


Q ss_pred             ecCCCCCHHHHHH
Q 027949          159 SAKTNLNVEEVFF  171 (216)
Q Consensus       159 Sa~~~~gi~~l~~  171 (216)
                      ||+...++.++..
T Consensus       242 SAk~E~el~eL~~  254 (368)
T 2dby_A          242 SARLEAELAELSG  254 (368)
T ss_dssp             CHHHHHHHHTSCH
T ss_pred             echhHHHHHHhch
Confidence            9987655554433

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.56  E-value=1.8e-15  Score=128.19  Aligned_cols=120  Identities=19%  Similarity=0.204  Sum_probs=78.7

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCC---CccccceeeeEEEEE----------------------EE--------
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFT---TSFITTIGIDFKIRT----------------------IE--------   58 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~----------------------~~--------   58 (216)
                      ....++|+|+|.+|+|||||+|+|++..+.   ....++++.......                      +.        
T Consensus        62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~  141 (550)
T 2qpt_A           62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN  141 (550)
T ss_dssp             TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence            445689999999999999999999998763   222232211100000                      00        


Q ss_pred             ------ECCe-EEEEEEEeCCCccc-----------cccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCC
Q 027949           59 ------LDGK-RIKLQIWDTAGQER-----------FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN  120 (216)
Q Consensus        59 ------~~~~-~~~~~i~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~  120 (216)
                            +.+. ...+.||||||...           +......++..+|++|+|+|+++.........++..+..   .+
T Consensus       142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~  218 (550)
T 2qpt_A          142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---HE  218 (550)
T ss_dssp             TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---CG
T ss_pred             cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---cC
Confidence                  0000 02588999999764           334455677889999999999875444444555554433   35


Q ss_pred             CcEEEEEeCCCCCC
Q 027949          121 VNKILVGNKADMDE  134 (216)
Q Consensus       121 ~p~ivv~nK~Dl~~  134 (216)
                      .|+++|+||+|+.+
T Consensus       219 ~pvilVlNK~Dl~~  232 (550)
T 2qpt_A          219 DKIRVVLNKADMVE  232 (550)
T ss_dssp             GGEEEEEECGGGSC
T ss_pred             CCEEEEEECCCccC
Confidence            79999999999864

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.53  E-value=6.1e-15  Score=118.16  Aligned_cols=105  Identities=15%  Similarity=0.156  Sum_probs=64.9

Q ss_pred             EEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cChH
Q 027949           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA-VPTS  142 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~  142 (216)
                      +.+.||||||......   .....+|++++|+|++..+.+..+..   ...     +.|.++|+||+|+.+.... ...+
T Consensus       149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~~-----~~p~ivv~NK~Dl~~~~~~~~~~~  217 (341)
T 2p67_A          149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GLM-----EVADLIVINKDDGDNHTNVAIARH  217 (341)
T ss_dssp             CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HHH-----HHCSEEEECCCCTTCHHHHHHHHH
T ss_pred             CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hhh-----cccCEEEEECCCCCChHHHHHHHH
Confidence            6789999999654332   24578999999999976543211111   111     3578999999998542110 0001


Q ss_pred             HHHHHHHHh-------CCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 027949          143 KGQALADEY-------GIKFFETSAKTNLNVEEVFFSIARDIKQ  179 (216)
Q Consensus       143 ~~~~~~~~~-------~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  179 (216)
                      .........       ..+++++||++|.|+++++++|.+.+..
T Consensus       218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~  261 (341)
T 2p67_A          218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTA  261 (341)
T ss_dssp             HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence            222222221       3578999999999999999999997753

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.53  E-value=1.1e-13  Score=106.62  Aligned_cols=110  Identities=15%  Similarity=0.067  Sum_probs=67.5

Q ss_pred             EEEEEEeCCCccccccccc------cccccccEEEEEEeCCCH---hHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949           64 IKLQIWDTAGQERFRTITT------AYYRGAMGILLVYDVTDE---SSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE  134 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (216)
                      +.+.||||||.........      ..+.. +++++++|+...   ..+.....+.......  .+.|+++|+||+|+.+
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~iv~NK~D~~~  185 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLS  185 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCC
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc--cCCCeEEEEecccccc
Confidence            5789999999865433211      13355 889999987543   2222222111111111  2589999999999854


Q ss_pred             CCCccChHHHHH----------------------------HHHHhC--CeEEEEecCCCCCHHHHHHHHHHHHHH
Q 027949          135 SKRAVPTSKGQA----------------------------LADEYG--IKFFETSAKTNLNVEEVFFSIARDIKQ  179 (216)
Q Consensus       135 ~~~~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i~~  179 (216)
                      ...   .+.+..                            ++...+  ++++++||++++|+++++++|.+.+..
T Consensus       186 ~~~---~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~  257 (262)
T 1yrb_A          186 EEE---KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT  257 (262)
T ss_dssp             HHH---HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccc---HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence            211   111111                            123333  489999999999999999999887643

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.52  E-value=2.4e-15  Score=129.59  Aligned_cols=113  Identities=19%  Similarity=0.194  Sum_probs=81.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCC--------CC----------CccccceeeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGS--------FT----------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF   77 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~--------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   77 (216)
                      -+|+|+|..++|||||..+|+...        ..          .+...+.++......+.+++  +.++|+||||+..|
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDTPGH~DF   80 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN--TKVNIIDTPGHMDF   80 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSS--CBCCCEECCCSSST
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECC--EEEEEEECCCcHHH
Confidence            368999999999999999986411        10          11112333444444556666  67899999999999


Q ss_pred             ccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949           78 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE  134 (216)
Q Consensus        78 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (216)
                      .......++-+|++|+|+|+...-.......|. .+..+   ++|.++++||+|...
T Consensus        81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~-~a~~~---~lp~i~~INKmDr~~  133 (638)
T 3j25_A           81 LAEVYRSLSVLDGAILLISAKDGVQAQTRILFH-ALRKM---GIPTIFFINKIDQNG  133 (638)
T ss_dssp             HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHH-HHHHH---TCSCEECCEECCSSS
T ss_pred             HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHH-HHHHc---CCCeEEEEecccccc
Confidence            988888999999999999998764433333343 33333   688999999999754

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.48  E-value=1.9e-14  Score=124.87  Aligned_cols=158  Identities=16%  Similarity=0.152  Sum_probs=94.9

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCcccccee--------------------------------------------
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIG--------------------------------------------   49 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~--------------------------------------------   49 (216)
                      ...+|+|+|.+++|||||+|+|++..+.+......+                                            
T Consensus        50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~  129 (772)
T 3zvr_A           50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  129 (772)
T ss_dssp             CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence            347999999999999999999999776211110000                                            


Q ss_pred             -------eeEEEEEEEECCeEEEEEEEeCCCccc-------------ccccccccc-ccccEEEEEEeCCCHhHHHHHHH
Q 027949           50 -------IDFKIRTIELDGKRIKLQIWDTAGQER-------------FRTITTAYY-RGAMGILLVYDVTDESSFNNIRN  108 (216)
Q Consensus        50 -------~~~~~~~~~~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~~~~~~~~  108 (216)
                             .+.....+...+. ..+.|+||||...             +..+...++ ..+|++++|+|++.+........
T Consensus       130 g~~~~is~~~i~l~I~~P~~-~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~  208 (772)
T 3zvr_A          130 GTNKGISPVPINLRVYSPHV-LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  208 (772)
T ss_dssp             CSTTCCCSCCEEEEEEETTC-CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred             CCCCcccccceEEEEecCCC-CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence                   0011111111111 3578999999543             112233333 57899999999987533222222


Q ss_pred             HHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHH-H-HHHhC-CeEEEEecCCCCCHHHHHHHHHHH
Q 027949          109 WIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQA-L-ADEYG-IKFFETSAKTNLNVEEVFFSIARD  176 (216)
Q Consensus       109 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-~-~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~  176 (216)
                      ++..+.   ..+.|+++|+||+|+.+... ........ + ....+ .+++.+||++|.|++++++.|.+.
T Consensus       209 ll~~L~---~~g~pvIlVlNKiDlv~~~~-~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          209 IAKEVD---PQGQRTIGVITKLDLMDEGT-DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHHHC---TTCSSEEEEEECTTSSCTTC-CSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHHHH---hcCCCEEEEEeCcccCCcch-hhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            333332   34789999999999865322 11111110 0 00123 367889999999999999998863

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.47  E-value=6e-13  Score=116.06  Aligned_cols=118  Identities=18%  Similarity=0.135  Sum_probs=81.3

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcC--------CCC----------CccccceeeeEEEEEEEECC-----eEEEEEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDG--------SFT----------TSFITTIGIDFKIRTIELDG-----KRIKLQIW   69 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~--------~~~----------~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~   69 (216)
                      +..=+|+|+|..++|||||..+|+..        ...          .+...+.++......+.+.+     ..+.++|+
T Consensus        11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI   90 (709)
T 4fn5_A           11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI   90 (709)
T ss_dssp             GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred             HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence            55568999999999999999998631        111          12223333334444555532     24889999


Q ss_pred             eCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949           70 DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE  134 (216)
Q Consensus        70 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (216)
                      ||||+-.|.......++-+|++|+|+|+...-.......|.+....    +.|.++++||+|...
T Consensus        91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~----~lp~i~~iNKiDr~~  151 (709)
T 4fn5_A           91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY----GVPRIVYVNKMDRQG  151 (709)
T ss_dssp             CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH----TCCEEEEEECSSSTT
T ss_pred             eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc----CCCeEEEEccccccC
Confidence            9999999988888899999999999999876544444444444333    689999999999743

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.43  E-value=3.1e-13  Score=107.95  Aligned_cols=103  Identities=13%  Similarity=0.099  Sum_probs=62.9

Q ss_pred             EEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHH
Q 027949           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK  143 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  143 (216)
                      +.+.|+||+|.....   ......+|++++++|....+....+...   +.     ..+.++++||+|+... .......
T Consensus       148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~-~~~s~~~  215 (337)
T 2qm8_A          148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDG-ERRASAA  215 (337)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCC-HHHHHHH
T ss_pred             CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCc-hhHHHHH
Confidence            678999999974321   1234679999999998654322111111   11     2355788899996431 1112222


Q ss_pred             HHHHHHHh----------CCeEEEEecCCCCCHHHHHHHHHHHHH
Q 027949          144 GQALADEY----------GIKFFETSAKTNLNVEEVFFSIARDIK  178 (216)
Q Consensus       144 ~~~~~~~~----------~~~~~~~Sa~~~~gi~~l~~~l~~~i~  178 (216)
                      ...+....          ..+++.+||+++.|+++++++|.+...
T Consensus       216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            23332211          357899999999999999999988764

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.42  E-value=5.5e-13  Score=105.02  Aligned_cols=97  Identities=16%  Similarity=0.154  Sum_probs=78.2

Q ss_pred             ccccccccccccccccEEEEEEeCCCHh-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccC-hHHHHHHHHHh
Q 027949           74 QERFRTITTAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVP-TSKGQALADEY  151 (216)
Q Consensus        74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~~~~~~~  151 (216)
                      ++.+..+.+.+++++|++++|+|++++. ++..+..|+..+..   .+.|+++|+||+|+.+.. ... .+....++...
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~-~v~~~~~~~~~~~~~  141 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEE-EKKELERWISIYRDA  141 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHH-HHHHHHHHHHHHHHT
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCcc-ccHHHHHHHHHHHHC
Confidence            5667778888999999999999999986 88888888886654   378999999999986421 112 34455666777


Q ss_pred             CCeEEEEecCCCCCHHHHHHHHH
Q 027949          152 GIKFFETSAKTNLNVEEVFFSIA  174 (216)
Q Consensus       152 ~~~~~~~Sa~~~~gi~~l~~~l~  174 (216)
                      +.+++++||++|.|+++++..+.
T Consensus       142 g~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          142 GYDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             TCEEEECCTTTCTTHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHhhcc
Confidence            89999999999999999998863

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.39  E-value=6.1e-14  Score=102.99  Aligned_cols=105  Identities=9%  Similarity=-0.009  Sum_probs=70.1

Q ss_pred             CCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHH----HHhc-CCCCcEEEEEeCC-CCCCCCCccChHHHH
Q 027949           72 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI----EQHA-SDNVNKILVGNKA-DMDESKRAVPTSKGQ  145 (216)
Q Consensus        72 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~----~~~~-~~~~p~ivv~nK~-Dl~~~~~~~~~~~~~  145 (216)
                      +|+...+.+|..|+.++|++|||+|.+|.+.+. .+..+..+    .+.. ..+.|++|++||. |+++   ..+..++.
T Consensus       110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~---Ams~~EI~  185 (227)
T 3l82_B          110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK---RMPCFYLA  185 (227)
T ss_dssp             -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC---BCCHHHHH
T ss_pred             CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC---CCCHHHHH
Confidence            378889999999999999999999999875443 33333222    2221 2478999999995 7744   33444433


Q ss_pred             HHHH----HhCCeEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027949          146 ALAD----EYGIKFFETSAKTNLNVEEVFFSIARDIKQR  180 (216)
Q Consensus       146 ~~~~----~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  180 (216)
                      +...    ...|.+..|||.+|+|+.+.++||.+.+..+
T Consensus       186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k  224 (227)
T 3l82_B          186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  224 (227)
T ss_dssp             HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred             HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence            3322    2358899999999999999999998776543

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.33  E-value=1.6e-11  Score=99.54  Aligned_cols=87  Identities=20%  Similarity=0.203  Sum_probs=64.5

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCC-CCccccceeeeEEEEEEEECCeE---------------EEEEEEeCCCccc
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQER   76 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~   76 (216)
                      ....+|+|+|.+|||||||+|+|++... .....|+.+.+.....+.+.+..               ..+.+||+||...
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~   97 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   97 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence            4457999999999999999999999776 55566666667777777776521               3678999999543


Q ss_pred             c-------ccccccccccccEEEEEEeCCC
Q 027949           77 F-------RTITTAYYRGAMGILLVYDVTD   99 (216)
Q Consensus        77 ~-------~~~~~~~~~~~d~~i~v~d~~~   99 (216)
                      .       .......++.+|++++|+|+.+
T Consensus        98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            2       1123344578999999999863

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.31  E-value=1.2e-12  Score=105.97  Aligned_cols=89  Identities=16%  Similarity=0.165  Sum_probs=53.8

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCe---------------EEEEEEEeCCCcccc
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK---------------RIKLQIWDTAGQERF   77 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~   77 (216)
                      ...++|+++|.+|+|||||+|+|++..+.....++.+.+.....+.+.+.               ...+.+||+||....
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~   99 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG   99 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence            44589999999999999999999998765555566666666666666542               135899999997654


Q ss_pred             cc-------ccccccccccEEEEEEeCCCHh
Q 027949           78 RT-------ITTAYYRGAMGILLVYDVTDES  101 (216)
Q Consensus        78 ~~-------~~~~~~~~~d~~i~v~d~~~~~  101 (216)
                      ..       .+...++.+|++++|+|+++.+
T Consensus       100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~  130 (396)
T 2ohf_A          100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDD  130 (396)
T ss_dssp             -------CCHHHHHHHTSSSEEEEEEC----
T ss_pred             cchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence            43       3455678999999999997643

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.27  E-value=1.9e-12  Score=99.62  Aligned_cols=106  Identities=8%  Similarity=-0.029  Sum_probs=74.1

Q ss_pred             CCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHH----HHHHHh-cCCCCcEEEEEeC-CCCCCCCCccChHHH
Q 027949           71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI----RNIEQH-ASDNVNKILVGNK-ADMDESKRAVPTSKG  144 (216)
Q Consensus        71 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~----~~~~~~-~~~~~p~ivv~nK-~Dl~~~~~~~~~~~~  144 (216)
                      .+|+...+..|..|+.++|++|||+|.+|.+.+. ....+    ..+.+. ...+.|++|++|| .|++++   .+..++
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A---ms~~EI  269 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR---MPCFYL  269 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB---CCHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC---CCHHHH
Confidence            3577888999999999999999999999986543 22222    223222 1247999999996 687543   344443


Q ss_pred             HHHHH----HhCCeEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027949          145 QALAD----EYGIKFFETSAKTNLNVEEVFFSIARDIKQR  180 (216)
Q Consensus       145 ~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  180 (216)
                      .+...    ...+.+..|||.+|+|+.+.++||.+.+..+
T Consensus       270 ~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k  309 (312)
T 3l2o_B          270 AHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  309 (312)
T ss_dssp             HHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred             HHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence            33321    2347899999999999999999999887543

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.06  E-value=2.3e-10  Score=93.45  Aligned_cols=62  Identities=23%  Similarity=0.390  Sum_probs=37.0

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCcc----ccceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSF----ITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   74 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   74 (216)
                      ...++++|+|++|+|||||++.|++..+....    .+..........++..+....++++|++|.
T Consensus        40 Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~  105 (427)
T 2qag_B           40 GFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGF  105 (427)
T ss_dssp             CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECC
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhh
Confidence            34577999999999999999999987543211    122222211222222333347889999874

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.01  E-value=4.1e-10  Score=87.15  Aligned_cols=138  Identities=22%  Similarity=0.237  Sum_probs=69.8

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCcc--------cc-ceeeeEEEEEEEECCeEEEEEEEeCCCcccccc------
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSF--------IT-TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------   79 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------   79 (216)
                      .++++|+|++|+|||||++.|++...+...        .+ +.........++..+....++++|++|......      
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            589999999999999999999885432110        00 000011111111122223678999987321000      


Q ss_pred             ----------------------ccccccccccEEEEEEeCC-CHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027949           80 ----------------------ITTAYYRGAMGILLVYDVT-DESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK  136 (216)
Q Consensus        80 ----------------------~~~~~~~~~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  136 (216)
                                            ...-.+..+++.++++|.. .+-...+ ...+..+..   . .++++|++|+|.....
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~---~-~~vI~Vi~K~D~lt~~  156 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK---V-VNIIPVIAKADTMTLE  156 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT---T-SEEEEEETTGGGSCHH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh---c-CcEEEEEeccccCCHH
Confidence                                  0011123468888888854 2211111 223333332   2 7999999999964311


Q ss_pred             -CccChHHHHHHHHHhCCeEEE
Q 027949          137 -RAVPTSKGQALADEYGIKFFE  157 (216)
Q Consensus       137 -~~~~~~~~~~~~~~~~~~~~~  157 (216)
                       .......+......+++.+|.
T Consensus       157 e~~~~k~~i~~~l~~~~i~i~~  178 (270)
T 3sop_A          157 EKSEFKQRVRKELEVNGIEFYP  178 (270)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSS
T ss_pred             HHHHHHHHHHHHHHHcCccccC
Confidence             111223344445566776664

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.96  E-value=9e-10  Score=88.94  Aligned_cols=96  Identities=23%  Similarity=0.318  Sum_probs=71.4

Q ss_pred             CccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHH----HHHHH
Q 027949           73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK----GQALA  148 (216)
Q Consensus        73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~----~~~~~  148 (216)
                      ..+.|......+++.++++++|+|+.++.     ..|...+.+... +.|+++|+||+|+.+..  ...+.    ...++
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~~--~~~~~~~~~l~~~~  126 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPKS--VKHDKVKHWMRYSA  126 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCTT--SCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCcc--cCHHHHHHHHHHHH
Confidence            35678888888888999999999999864     345455555443 68999999999986422  22223    33345


Q ss_pred             HHhCC---eEEEEecCCCCCHHHHHHHHHHH
Q 027949          149 DEYGI---KFFETSAKTNLNVEEVFFSIARD  176 (216)
Q Consensus       149 ~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~  176 (216)
                      ...+.   .++.+||++|.|+++++++|.+.
T Consensus       127 ~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~  157 (368)
T 3h2y_A          127 KQLGLKPEDVFLISAAKGQGIAELADAIEYY  157 (368)
T ss_dssp             HHTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence            66676   89999999999999999998654

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.95  E-value=5.3e-11  Score=96.21  Aligned_cols=139  Identities=15%  Similarity=0.179  Sum_probs=80.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC------CCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccc----c----
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG------SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI----T----   81 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----~----   81 (216)
                      .+|+++|.+|+|||||+|+|++.      .......++.+.+  ...+..+.   .+.++||||.......    .    
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l  237 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD--MIEIPLES---GATLYDTPGIINHHQMAHFVDARDL  237 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE--EEEEECST---TCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe--eEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHH
Confidence            47999999999999999999986      2323334444433  33344443   2688999996432211    1    


Q ss_pred             cccc--ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEe
Q 027949           82 TAYY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETS  159 (216)
Q Consensus        82 ~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (216)
                      ..++  ...+.++|+++....-.+..+..    +......+.|+++++||.|..+  ..........+.+..+..+.+.+
T Consensus       238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~--~~~~~~~~~~~~~~~g~~l~p~~  311 (369)
T 3ec1_A          238 KIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVH--RTKLEKADSLYANQLGELLSPPS  311 (369)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEE--EEEGGGHHHHHHHHBTTTBCSSC
T ss_pred             HHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccc--cccHHHHHHHHHHhcCCccCCCC
Confidence            1111  56788999998743211011100    1112234689999999999743  22233444455566676666656


Q ss_pred             cCCCCC
Q 027949          160 AKTNLN  165 (216)
Q Consensus       160 a~~~~g  165 (216)
                      +.+..+
T Consensus       312 ~~~~~~  317 (369)
T 3ec1_A          312 KRYAAE  317 (369)
T ss_dssp             GGGTTT
T ss_pred             chhhhh
Confidence            554444

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.95  E-value=3.1e-10  Score=94.80  Aligned_cols=149  Identities=13%  Similarity=0.102  Sum_probs=84.5

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHH------cCCCCCc----cccce-----------eeeEEEEE---------------E
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFS------DGSFTTS----FITTI-----------GIDFKIRT---------------I   57 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~------~~~~~~~----~~~~~-----------~~~~~~~~---------------~   57 (216)
                      ....|+|+|.+||||||+++.|.      +..+...    +.+..           +.......               +
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~  179 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF  179 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence            44689999999999999999998      4332100    00000           01111100               0


Q ss_pred             EECCeEEEEEEEeCCCcccccc-cccc---c--cccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcE-EEEEeCC
Q 027949           58 ELDGKRIKLQIWDTAGQERFRT-ITTA---Y--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK-ILVGNKA  130 (216)
Q Consensus        58 ~~~~~~~~~~i~D~~G~~~~~~-~~~~---~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~  130 (216)
                      ...+  +.+.|+||||...... +...   .  +..+|.+++|+|+.......   .....+...    .|+ .+|+||.
T Consensus       180 ~~~~--~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~~----~~i~gvVlNK~  250 (504)
T 2j37_W          180 KNEN--FEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKDK----VDVASVIVTKL  250 (504)
T ss_dssp             HHTT--CCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHHH----HCCCCEEEECT
T ss_pred             HHCC--CcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHhh----cCceEEEEeCC
Confidence            0133  6789999999753221 1111   1  12689999999998754311   222223221    464 8889999


Q ss_pred             CCCCCCCccChHHHHHHHHHhCCeE------------------EEEecCCCCC-HHHHHHHHHHH
Q 027949          131 DMDESKRAVPTSKGQALADEYGIKF------------------FETSAKTNLN-VEEVFFSIARD  176 (216)
Q Consensus       131 Dl~~~~~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~g-i~~l~~~l~~~  176 (216)
                      |.... .    ..+.......+.++                  +.+|+..|.| ++++++++.+.
T Consensus       251 D~~~~-~----g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          251 DGHAK-G----GGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             TSCCC-C----THHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             ccccc-h----HHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            97421 1    11222334444443                  3468888999 99999988766

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.88  E-value=3.5e-11  Score=97.21  Aligned_cols=134  Identities=13%  Similarity=0.130  Sum_probs=73.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCC-------CccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccc----c--
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFT-------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT----T--   82 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----~--   82 (216)
                      .+|+++|.+|+|||||+|+|++....       ....++.+  .....+.+..   .+.++||||......+.    .  
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT--~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~  235 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTT--LDLIDIPLDE---ESSLYDTPGIINHHQMAHYVGKQS  235 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC------CEEEEESSS---SCEEEECCCBCCTTSGGGGSCHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCee--cceEEEEecC---CeEEEeCCCcCcHHHHHHHhhHHH
Confidence            57999999999999999999885311       12223333  3333344443   26889999964322111    1  


Q ss_pred             --cc--cccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEE
Q 027949           83 --AY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFET  158 (216)
Q Consensus        83 --~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (216)
                        .+  ....+.++|+++......+..+.    .+......+.|+++++||.|..+  ..........+.+..+..+++.
T Consensus       236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~----~~d~l~~~~~~~~~v~nk~d~~~--~~~~~~~~~~~~~~~g~~l~p~  309 (368)
T 3h2y_A          236 LKLITPTKEIKPMVFQLNEEQTLFFSGLA----RFDYVSGGRRAFTCHFSNRLTIH--RTKLEKADELYKNHAGDLLSPP  309 (368)
T ss_dssp             HHHHSCSSCCCCEEEEECTTEEEEETTTE----EEEEEESSSEEEEEEECTTSCEE--EEEHHHHHHHHHHHBTTTBCSS
T ss_pred             HHHhccccccCceEEEEcCCCEEEEcceE----EEEEecCCCceEEEEecCccccc--cccHHHHHHHHHHHhCCccCCC
Confidence              11  24567888888863221101110    01112234689999999999743  2222333444455556554444


Q ss_pred             ec
Q 027949          159 SA  160 (216)
Q Consensus       159 Sa  160 (216)
                      ++
T Consensus       310 ~~  311 (368)
T 3h2y_A          310 TP  311 (368)
T ss_dssp             CH
T ss_pred             ch
Confidence            43

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.85  E-value=6.2e-08  Score=79.06  Aligned_cols=157  Identities=14%  Similarity=0.128  Sum_probs=83.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCcc-ccceeeeE--EEEEEEECCeEEEEEEEeCCCcccccccccc-----cccc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSF-ITTIGIDF--KIRTIELDGKRIKLQIWDTAGQERFRTITTA-----YYRG   87 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~-----~~~~   87 (216)
                      ..++|+|++|||||||+|.|.+...+..- ....+.+.  ....++... ...+.+||++|..........     -+..
T Consensus        70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~-~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~  148 (413)
T 1tq4_A           70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKMKFYE  148 (413)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred             eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccc-cCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence            57899999999999999999984322111 00001000  011112111 125788999985421111111     1233


Q ss_pred             ccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC--C----CCCccChHH----HHHHH----HHhC-
Q 027949           88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD--E----SKRAVPTSK----GQALA----DEYG-  152 (216)
Q Consensus        88 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~--~----~~~~~~~~~----~~~~~----~~~~-  152 (216)
                      .+..++ ++.....  ..-..+...+...   +.|+++|.||.|+.  +    .-.......    ++.+.    ...+ 
T Consensus       149 ~~~~~~-lS~G~~~--kqrv~la~aL~~~---~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~  222 (413)
T 1tq4_A          149 YDFFII-ISATRFK--KNDIDIAKAISMM---KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI  222 (413)
T ss_dssp             CSEEEE-EESSCCC--HHHHHHHHHHHHT---TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cCCeEE-eCCCCcc--HHHHHHHHHHHhc---CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            355554 7765321  1111222233332   68999999999962  1    111222222    33332    1222 


Q ss_pred             --CeEEEEec--CCCCCHHHHHHHHHHHHHH
Q 027949          153 --IKFFETSA--KTNLNVEEVFFSIARDIKQ  179 (216)
Q Consensus       153 --~~~~~~Sa--~~~~gi~~l~~~l~~~i~~  179 (216)
                        ..++.+|+  .++.|++++.+.|.+.+.+
T Consensus       223 ~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe  253 (413)
T 1tq4_A          223 AEPPIFLLSNKNVCHYDFPVLMDKLISDLPI  253 (413)
T ss_dssp             SSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred             CCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence              36788999  5667899999998877644

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.81  E-value=3e-09  Score=85.90  Aligned_cols=97  Identities=23%  Similarity=0.309  Sum_probs=70.0

Q ss_pred             CccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHH----HHHHH
Q 027949           73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK----GQALA  148 (216)
Q Consensus        73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~----~~~~~  148 (216)
                      .++.|......+++.++++++|+|+.++.+     .|...+..... +.|+++|+||+|+.+..  ...+.    ...++
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~~--~~~~~~~~~l~~~~  128 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPRS--VKYPKLLRWMRRMA  128 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCTT--CCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCCc--cCHHHHHHHHHHHH
Confidence            467788888888889999999999999873     33333444333 68999999999986522  22223    33345


Q ss_pred             HHhCC---eEEEEecCCCCCHHHHHHHHHHHH
Q 027949          149 DEYGI---KFFETSAKTNLNVEEVFFSIARDI  177 (216)
Q Consensus       149 ~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~i  177 (216)
                      ...+.   .++.+||++|.|++++++.|.+..
T Consensus       129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             HTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            56665   789999999999999999886543

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.77  E-value=1.2e-08  Score=79.48  Aligned_cols=102  Identities=15%  Similarity=0.127  Sum_probs=70.1

Q ss_pred             EeCCCcc-ccccccccccccccEEEEEEeCCCHhHHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHH
Q 027949           69 WDTAGQE-RFRTITTAYYRGAMGILLVYDVTDESSFN--NIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQ  145 (216)
Q Consensus        69 ~D~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~  145 (216)
                      -..||+. .........+.++|++++|+|+.+|.+..  .+..++        .+.|.++|+||+|+.+.   ...+...
T Consensus         4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~---~~~~~~~   72 (282)
T 1puj_A            4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADA---AVTQQWK   72 (282)
T ss_dssp             -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCH---HHHHHHH
T ss_pred             cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCH---HHHHHHH
Confidence            3568875 23334556678999999999999987654  333332        37899999999998641   1122334


Q ss_pred             HHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 027949          146 ALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL  181 (216)
Q Consensus       146 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  181 (216)
                      ++....+.+++.+||.++.|+++++..+.+.+....
T Consensus        73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~~  108 (282)
T 1puj_A           73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKF  108 (282)
T ss_dssp             HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHHH
T ss_pred             HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHHH
Confidence            444456789999999999999999999888776543

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.52  E-value=3.7e-08  Score=80.82  Aligned_cols=91  Identities=14%  Similarity=0.076  Sum_probs=54.0

Q ss_pred             EEEEEEeCCCccccccccc------cccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027949           64 IKLQIWDTAGQERFRTITT------AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR  137 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  137 (216)
                      +.+.|+||+|.........      ......|.+++|+|+.......   .....+.+.   ..+..||+||.|...   
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~---~~a~~f~~~---~~i~gVIlTKlD~~~---  253 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY---NQALAFKEA---TPIGSIIVTKLDGSA---  253 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH---HHHHHHHHS---CTTEEEEEECCSSCS---
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH---HHHHHHHhh---CCCeEEEEECCCCcc---
Confidence            6788999999543221110      1122468899999987654322   222333332   235578899999642   


Q ss_pred             ccChHHHHHHHHHhCCeEEEEecCCCCCHH
Q 027949          138 AVPTSKGQALADEYGIKFFETSAKTNLNVE  167 (216)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  167 (216)
                        ....+..+....+.|+.+++.  |++++
T Consensus       254 --~gG~~ls~~~~~g~PI~fig~--Ge~vd  279 (443)
T 3dm5_A          254 --KGGGALSAVAATGAPIKFIGT--GEKID  279 (443)
T ss_dssp             --SHHHHHHHHHTTCCCEEEEEC--SSSTT
T ss_pred             --cccHHHHHHHHHCCCEEEEEc--CCChH
Confidence              223455566677888887775  55443

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.52  E-value=9.3e-08  Score=74.35  Aligned_cols=57  Identities=28%  Similarity=0.364  Sum_probs=35.9

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCcc
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   75 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   75 (216)
                      ..++|+|+|.+|+|||||+|+|.+.... ....++.+.+..  .+..+.   .+.+|||||..
T Consensus       119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEETT---TEEEEECCCCC
T ss_pred             CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEeCC---CEEEEECcCcC
Confidence            4589999999999999999999987632 333333332222  333333   57899999964

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.43  E-value=6.9e-08  Score=74.29  Aligned_cols=56  Identities=21%  Similarity=0.326  Sum_probs=35.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCccc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER   76 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   76 (216)
                      ++++|+|.+|+|||||+|+|.+.... ....++.+..  ...+..+.   .+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKG--IQWFSLEN---GVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC----------CC--SCEEECTT---SCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccc--eEEEEeCC---CEEEEECCCccc
Confidence            69999999999999999999987653 2222222222  22233332   578999999753

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.37  E-value=7.9e-07  Score=73.09  Aligned_cols=83  Identities=17%  Similarity=0.058  Sum_probs=47.5

Q ss_pred             EEEEEEeCCCccccccc-c-----ccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCC-c-EEEEEeCCCCCCC
Q 027949           64 IKLQIWDTAGQERFRTI-T-----TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNV-N-KILVGNKADMDES  135 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~-~-----~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-p-~ivv~nK~Dl~~~  135 (216)
                      +.+.|+||||....... .     ...+...|.+++|+|+.....   .......+..    .. | ..+|+||.|... 
T Consensus       181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~----~~~~i~gvVlnK~D~~~-  252 (432)
T 2v3c_C          181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFKE----AVGEIGSIIVTKLDGSA-  252 (432)
T ss_dssp             CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHHT----TSCSCEEEEEECSSSCS-
T ss_pred             CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHhh----cccCCeEEEEeCCCCcc-
Confidence            67899999996532110 0     111235899999999865532   2222222221    34 5 788999999632 


Q ss_pred             CCccChHHHHHHHHHhCCeEEEE
Q 027949          136 KRAVPTSKGQALADEYGIKFFET  158 (216)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~  158 (216)
                          ....+..+....+.++..+
T Consensus       253 ----~~g~~l~~~~~~~~pi~~i  271 (432)
T 2v3c_C          253 ----KGGGALSAVAETKAPIKFI  271 (432)
T ss_dssp             ----TTHHHHHHHHHSSCCEEEE
T ss_pred             ----chHHHHHHHHHHCCCEEEe
Confidence                1123344566667666655

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.31  E-value=1.3e-07  Score=77.45  Aligned_cols=90  Identities=14%  Similarity=0.069  Sum_probs=54.0

Q ss_pred             EEEEEEeCCCccc--cccc----cccc--cccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027949           64 IKLQIWDTAGQER--FRTI----TTAY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES  135 (216)
Q Consensus        64 ~~~~i~D~~G~~~--~~~~----~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  135 (216)
                      +.+.|+||+|...  ....    ....  ....+.+++|+|+.......   .....+.+.   -.+..||+||.|... 
T Consensus       180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~---~~a~~f~~~---~~~~gVIlTKlD~~a-  252 (433)
T 3kl4_A          180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY---DLASRFHQA---SPIGSVIITKMDGTA-  252 (433)
T ss_dssp             CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH---HHHHHHHHH---CSSEEEEEECGGGCS-
T ss_pred             CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH---HHHHHHhcc---cCCcEEEEecccccc-
Confidence            5788999999643  1111    1111  11358899999997654322   222333333   245688999999632 


Q ss_pred             CCccChHHHHHHHHHhCCeEEEEecCCCCCH
Q 027949          136 KRAVPTSKGQALADEYGIKFFETSAKTNLNV  166 (216)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  166 (216)
                          ....+..+....+.|+.+++.  |+++
T Consensus       253 ----~~G~als~~~~~g~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          253 ----KGGGALSAVVATGATIKFIGT--GEKI  277 (433)
T ss_dssp             ----CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred             ----cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence                233456666678899888875  6554

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.29  E-value=4.2e-07  Score=77.25  Aligned_cols=64  Identities=17%  Similarity=0.148  Sum_probs=39.0

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccc---eeeeEEEEEEEE-CCeEEEEEEEeCCCccc
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITT---IGIDFKIRTIEL-DGKRIKLQIWDTAGQER   76 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~   76 (216)
                      ...++|+|+|.+|+|||||+|+|++.........+   .+.....+.... ......+.++||||...
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            45689999999999999999999987642211111   111111111111 11124688999999653

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.22  E-value=4.7e-07  Score=69.63  Aligned_cols=93  Identities=14%  Similarity=0.063  Sum_probs=60.3

Q ss_pred             CCCcccc-ccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHH
Q 027949           71 TAGQERF-RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALAD  149 (216)
Q Consensus        71 ~~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~  149 (216)
                      .||+... .......+.++|++++|+|+.+|.+.....     +. ..  +.|.++|+||+|+.+.   ...+....+..
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~-----l~-ll--~k~~iivlNK~DL~~~---~~~~~~~~~~~   72 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG-----VD-FS--RKETIILLNKVDIADE---KTTKKWVEFFK   72 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT-----SC-CT--TSEEEEEEECGGGSCH---HHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH-----HH-hc--CCCcEEEEECccCCCH---HHHHHHHHHHH
Confidence            3665422 123455678899999999999886543210     11 11  6899999999998642   11223344455


Q ss_pred             HhCCeEEEEecCCCCCHHHHHHHHHH
Q 027949          150 EYGIKFFETSAKTNLNVEEVFFSIAR  175 (216)
Q Consensus       150 ~~~~~~~~~Sa~~~~gi~~l~~~l~~  175 (216)
                      ..+.++ .+||.++.|+++++.+|..
T Consensus        73 ~~g~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           73 KQGKRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             HTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred             HcCCeE-EEECCCCcCHHHHHHHHHH
Confidence            567888 9999999999999887644

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.17  E-value=2.7e-06  Score=66.57  Aligned_cols=92  Identities=15%  Similarity=0.116  Sum_probs=56.1

Q ss_pred             EEEEEEeCCCccc--ccc-ccc-----cccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC
Q 027949           64 IKLQIWDTAGQER--FRT-ITT-----AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KILVGNKADMDE  134 (216)
Q Consensus        64 ~~~~i~D~~G~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~  134 (216)
                      +.+.|+||||...  ... +..     .....+|.+++|+|+....   ........+..    ..+ ..+|+||.|...
T Consensus       181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----~~~i~gvVlnk~D~~~  253 (297)
T 1j8m_F          181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ----ASKIGTIIITKMDGTA  253 (297)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred             CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence            6789999999765  211 111     1234689999999986432   22222233332    245 678899999532


Q ss_pred             CCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q 027949          135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEV  169 (216)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  169 (216)
                           ....+..+....+.++..++  .|++++++
T Consensus       254 -----~~g~~~~~~~~~~~pi~~i~--~Ge~v~dl  281 (297)
T 1j8m_F          254 -----KGGGALSAVAATGATIKFIG--TGEKIDEL  281 (297)
T ss_dssp             -----THHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred             -----chHHHHHHHHHHCcCEEEEe--CCCChhhc
Confidence                 22345566777888888776  56666554

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.16  E-value=6.6e-07  Score=70.22  Aligned_cols=90  Identities=13%  Similarity=0.149  Sum_probs=59.4

Q ss_pred             cccccccccccEEEEEEeCCCHhHH-HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cChHHHHHHHHHhCCeEE
Q 027949           79 TITTAYYRGAMGILLVYDVTDESSF-NNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA-VPTSKGQALADEYGIKFF  156 (216)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~  156 (216)
                      .+.+..+.++|.+++|+|+.+|..- ..+..++.....   .++|.+||+||+||.+.... ...+....+....|.+++
T Consensus        78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~  154 (307)
T 1t9h_A           78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVY  154 (307)
T ss_dssp             EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred             hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEE
Confidence            3445567899999999999877543 334444433322   37899999999998652110 012334445556688999


Q ss_pred             EEecCCCCCHHHHHH
Q 027949          157 ETSAKTNLNVEEVFF  171 (216)
Q Consensus       157 ~~Sa~~~~gi~~l~~  171 (216)
                      .+||.++.|+++|+.
T Consensus       155 ~~sa~~~~g~~~L~~  169 (307)
T 1t9h_A          155 LTSSKDQDSLADIIP  169 (307)
T ss_dssp             ECCHHHHTTCTTTGG
T ss_pred             EEecCCCCCHHHHHh
Confidence            999998888776544

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.11  E-value=8.7e-06  Score=65.12  Aligned_cols=86  Identities=15%  Similarity=0.154  Sum_probs=55.4

Q ss_pred             ccccccEEEEEEeCCCHhH-HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCC
Q 027949           84 YYRGAMGILLVYDVTDESS-FNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT  162 (216)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (216)
                      ...++|.+++|.+. +|.. ...+..++......   +.|++||+||+||.+.......+.........|.+++.+||.+
T Consensus       127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~  202 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT  202 (358)
T ss_dssp             EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred             HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            45789999988665 4543 33444454433333   6788999999998652110001222333445678999999999


Q ss_pred             CCCHHHHHHHH
Q 027949          163 NLNVEEVFFSI  173 (216)
Q Consensus       163 ~~gi~~l~~~l  173 (216)
                      +.|++++...+
T Consensus       203 ~~gl~~L~~~~  213 (358)
T 2rcn_A          203 QDGLKPLEEAL  213 (358)
T ss_dssp             TBTHHHHHHHH
T ss_pred             CcCHHHHHHhc
Confidence            99999986643

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.02  E-value=9.2e-06  Score=69.70  Aligned_cols=23  Identities=35%  Similarity=0.501  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .|+|+|++|||||||++.+.+..
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC
T ss_pred             eEEEECCCCChHHHHHHHHhCCC
Confidence            48999999999999999999864

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.96  E-value=1.2e-05  Score=63.66  Aligned_cols=92  Identities=12%  Similarity=0.089  Sum_probs=53.6

Q ss_pred             EEEEEeCCCccccccccccc------cccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc
Q 027949           65 KLQIWDTAGQERFRTITTAY------YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA  138 (216)
Q Consensus        65 ~~~i~D~~G~~~~~~~~~~~------~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  138 (216)
                      .+.++|++|...........      .-..|-.+++.|.....   .+......+....   ...++++||.|...    
T Consensus       213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~---~it~iilTKlD~~a----  282 (328)
T 3e70_C          213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV---KIDGIILTKLDADA----  282 (328)
T ss_dssp             SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS---CCCEEEEECGGGCS----
T ss_pred             hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc---CCCEEEEeCcCCcc----
Confidence            45678999964332211111      11357788999975543   3333334444332   23377889999421    


Q ss_pred             cChHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q 027949          139 VPTSKGQALADEYGIKFFETSAKTNLNVEEV  169 (216)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  169 (216)
                       ..-.+.......+.++..++  +|++++++
T Consensus       283 -~~G~~l~~~~~~~~pi~~i~--~Ge~v~dl  310 (328)
T 3e70_C          283 -RGGAALSISYVIDAPILFVG--VGQGYDDL  310 (328)
T ss_dssp             -CCHHHHHHHHHHTCCEEEEE--CSSSTTCE
T ss_pred             -chhHHHHHHHHHCCCEEEEe--CCCCcccc
Confidence             22345567778888888886  77776654

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.71  E-value=1.4e-06  Score=72.50  Aligned_cols=110  Identities=12%  Similarity=0.112  Sum_probs=59.8

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccc--ccccc--------c
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--FRTIT--------T   82 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~--------~   82 (216)
                      ...+.|+++|.+||||||+.++|...... ...++.............+......+||..|...  ....+        .
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~  115 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR  115 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            34578999999999999999999754211 0111111000000000011112345788888632  22222        4


Q ss_pred             cccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEE
Q 027949           83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVG  127 (216)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~  127 (216)
                      .++...++.++|+|.++. .......|+..+...   +.+++++-
T Consensus       116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~---~~~vv~l~  156 (469)
T 1bif_A          116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN---GYKTFFVE  156 (469)
T ss_dssp             HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH---TCEEEEEE
T ss_pred             HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc---CCcEEEEE
Confidence            455557788999999987 445555666655544   33444443

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.67  E-value=5.7e-05  Score=62.17  Aligned_cols=26  Identities=19%  Similarity=0.128  Sum_probs=22.9

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcC
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      ....-|.|+|++++|||||+|.|++.
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhhh
Confidence            45678999999999999999999863

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.52  E-value=5e-05  Score=54.77  Aligned_cols=24  Identities=29%  Similarity=0.695  Sum_probs=21.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .+++++|++|+|||||++.+.+..
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            368999999999999999998653

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.38  E-value=9.1e-05  Score=53.36  Aligned_cols=22  Identities=27%  Similarity=0.504  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -++|+|++|||||||++.|.+.
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5799999999999999999874

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.37  E-value=0.0002  Score=52.36  Aligned_cols=85  Identities=14%  Similarity=0.054  Sum_probs=53.8

Q ss_pred             EEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCCCccCh
Q 027949           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA--SDNVNKILVGNKADMDESKRAVPT  141 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~  141 (216)
                      +.+.|+|+|+..  .......+..+|.+|+++..+...  ..+...+..+....  ..+.++.+|+|+.|-..    ...
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~----~~~  147 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA----TML  147 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE----EEE
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc----hHH
Confidence            678899999864  333455566799999999876543  55555555555432  23567789999998421    123


Q ss_pred             HHHHHHHHHhCCeEE
Q 027949          142 SKGQALADEYGIKFF  156 (216)
Q Consensus       142 ~~~~~~~~~~~~~~~  156 (216)
                      .+..++...++.+++
T Consensus       148 ~~~~~~l~~~~~~vl  162 (206)
T 4dzz_A          148 NVLKESIKDTGVKAF  162 (206)
T ss_dssp             HHHHHHHHHHTCCBC
T ss_pred             HHHHHHHHHcCCcee
Confidence            445555555665544

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.35  E-value=0.0001  Score=54.05  Aligned_cols=22  Identities=41%  Similarity=0.597  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .++|+|++|||||||++.|.+.
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5799999999999999999863

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.27  E-value=0.0027  Score=52.12  Aligned_cols=83  Identities=16%  Similarity=0.077  Sum_probs=45.6

Q ss_pred             EEEEEEeCCCccccccccc------cccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCC
Q 027949           64 IKLQIWDTAGQERFRTITT------AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KILVGNKADMDESK  136 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~  136 (216)
                      +.+.|+||||.........      ..+...+.+++|+|+......   ......+...    .+ .-+|+||.|...  
T Consensus       184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~~----l~i~gvVlnK~D~~~--  254 (433)
T 2xxa_A          184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNEA----LPLTGVVLTKVDGDA--  254 (433)
T ss_dssp             CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHHH----SCCCCEEEECTTSSS--
T ss_pred             CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhcc----CCCeEEEEecCCCCc--
Confidence            6789999999654321111      113357889999998754322   2222333322    33 356899999632  


Q ss_pred             CccChHHHHHHHHHhCCeEEEE
Q 027949          137 RAVPTSKGQALADEYGIKFFET  158 (216)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~  158 (216)
                       ..  ..+..+....+.++..+
T Consensus       255 -~~--g~~l~i~~~~~~Pi~~i  273 (433)
T 2xxa_A          255 -RG--GAALSIRHITGKPIKFL  273 (433)
T ss_dssp             -CC--THHHHHHHHHCCCEEEE
T ss_pred             -cH--HHHHHHHHHHCCCeEEE
Confidence             11  23445555666654444

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.26  E-value=0.00015  Score=53.05  Aligned_cols=22  Identities=23%  Similarity=0.437  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -++|+|++|||||||++.|.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            4799999999999999999875

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.24  E-value=0.00016  Score=53.30  Aligned_cols=23  Identities=30%  Similarity=0.414  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      -++|+|++|||||||++.+.+..
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            47999999999999999998754

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.22  E-value=0.00017  Score=52.22  Aligned_cols=23  Identities=35%  Similarity=0.420  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -.|+|+|++||||||+++.|.+.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            45899999999999999999875

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.22  E-value=0.00017  Score=53.71  Aligned_cols=23  Identities=26%  Similarity=0.372  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      -++|+|++|||||||++.|.+..
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            57899999999999999998754

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.19  E-value=0.00019  Score=53.44  Aligned_cols=23  Identities=35%  Similarity=0.589  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|||||||++.|.+..
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            47999999999999999998744

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.19  E-value=4.1e-05  Score=55.63  Aligned_cols=22  Identities=36%  Similarity=0.555  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCC
Q 027949           18 LLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~~   39 (216)
                      |+|+|++|||||||+++|+...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7899999999999999998643

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.19  E-value=0.00024  Score=58.18  Aligned_cols=85  Identities=20%  Similarity=0.163  Sum_probs=48.2

Q ss_pred             EEEEEEeCCCcccccc-ccc-----cccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027949           64 IKLQIWDTAGQERFRT-ITT-----AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR  137 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  137 (216)
                      +.+.|+||||...... ...     ...-..|.+++|+|+...   ..+......+....   ...-+|+||.|...   
T Consensus       181 ~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg---q~av~~a~~f~~~l---~i~GVIlTKlD~~~---  251 (425)
T 2ffh_A          181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---QEALSVARAFDEKV---GVTGLVLTKLDGDA---  251 (425)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHHHT---CCCEEEEESGGGCS---
T ss_pred             CCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch---HHHHHHHHHHHhcC---CceEEEEeCcCCcc---
Confidence            5788999999654321 111     111247888999998643   22222333333321   13467899999532   


Q ss_pred             ccChHHHHHHHHHhCCeEEEEe
Q 027949          138 AVPTSKGQALADEYGIKFFETS  159 (216)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~S  159 (216)
                        ....+.......+.++.++.
T Consensus       252 --~~g~alsi~~~~g~PI~flg  271 (425)
T 2ffh_A          252 --RGGAALSARHVTGKPIYFAG  271 (425)
T ss_dssp             --SCHHHHHHHHHHCCCEEEEE
T ss_pred             --cHHHHHHHHHHHCCCEEEEe
Confidence              12245556677788877765

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.17  E-value=0.00022  Score=50.36  Aligned_cols=23  Identities=35%  Similarity=0.479  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++++|+.|+|||||++.+.+..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            57999999999999999998754

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.15  E-value=0.00027  Score=51.71  Aligned_cols=23  Identities=39%  Similarity=0.537  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      --|+|+|++|||||||++.|...
T Consensus        20 ~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           20 KTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECcCCCCHHHHHHHHHhh
Confidence            35789999999999999999864

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.15  E-value=0.00021  Score=51.03  Aligned_cols=20  Identities=40%  Similarity=0.574  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 027949           17 KLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~   36 (216)
                      -++++|++|||||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            47899999999999999754

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.14  E-value=0.00023  Score=52.46  Aligned_cols=24  Identities=29%  Similarity=0.303  Sum_probs=21.3

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcC
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      ...|+|+|++|||||||++.|.+.
T Consensus        22 g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           22 RQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            467899999999999999998764

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.13  E-value=0.00022  Score=53.74  Aligned_cols=23  Identities=30%  Similarity=0.329  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47999999999999999998754

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.09  E-value=0.00028  Score=52.03  Aligned_cols=23  Identities=30%  Similarity=0.393  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      -|+|+|++||||||+++.|....
T Consensus        10 ~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A           10 LIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHST
T ss_pred             EEEEECcCCCCHHHHHHHHHhhC
Confidence            47899999999999999998764

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=97.08  E-value=0.0041  Score=45.76  Aligned_cols=85  Identities=13%  Similarity=0.084  Sum_probs=53.3

Q ss_pred             EEEEEEeCCCc-cccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChH
Q 027949           64 IKLQIWDTAGQ-ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTS  142 (216)
Q Consensus        64 ~~~~i~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~  142 (216)
                      +.+.++|+|+. ..  ......+..+|.+|+++..+ ..+...+...+..+....  +.++.+|+|+.|-...   ....
T Consensus        68 yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~---~~~~  139 (209)
T 3cwq_A           68 YQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS---KDGD  139 (209)
T ss_dssp             CSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS---CHHH
T ss_pred             CCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc---hHHH
Confidence            67889999876 32  22344566799988888765 456666666666665533  4668899999984220   1234


Q ss_pred             HHHHHHHHhCCeEE
Q 027949          143 KGQALADEYGIKFF  156 (216)
Q Consensus       143 ~~~~~~~~~~~~~~  156 (216)
                      +..+....++.+++
T Consensus       140 ~~~~~l~~~g~~v~  153 (209)
T 3cwq_A          140 EARQLLTTAGLPLF  153 (209)
T ss_dssp             HHHHHHHHTTCCBC
T ss_pred             HHHHHHHHcCCchh
Confidence            44455555665544

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.07  E-value=0.00046  Score=49.17  Aligned_cols=22  Identities=32%  Similarity=0.433  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ..|+|+|++||||||+.+.|.+
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999999865

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.07  E-value=0.00026  Score=52.92  Aligned_cols=23  Identities=39%  Similarity=0.420  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|||||||++.+.+-.
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46899999999999999998754

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.06  E-value=0.00032  Score=53.02  Aligned_cols=23  Identities=30%  Similarity=0.418  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++++|++|||||||++.+.+-.
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999764

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.02  E-value=0.00034  Score=51.95  Aligned_cols=23  Identities=30%  Similarity=0.393  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|||||||++.+.+-.
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36899999999999999998753

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.02  E-value=0.00036  Score=49.53  Aligned_cols=23  Identities=26%  Similarity=0.489  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      ..|+|+|++||||||+.+.|.+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999999764

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.02  E-value=0.00036  Score=50.44  Aligned_cols=21  Identities=33%  Similarity=0.540  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~   37 (216)
                      -++|+|++||||||+++.|.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999985

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.01  E-value=0.00034  Score=53.62  Aligned_cols=23  Identities=35%  Similarity=0.392  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|||||||++.+.+-.
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46899999999999999998754

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.01  E-value=0.00034  Score=53.96  Aligned_cols=23  Identities=35%  Similarity=0.531  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|||||||++.+.+-.
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            46899999999999999999754

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.00  E-value=0.00038  Score=51.08  Aligned_cols=23  Identities=35%  Similarity=0.525  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .-|+|+|++||||||+++.|...
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            45799999999999999999764

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.00  E-value=0.00037  Score=50.92  Aligned_cols=24  Identities=33%  Similarity=0.541  Sum_probs=21.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      ..|+|+|++||||||+++.|.+.-
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            368999999999999999998754

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.98  E-value=0.0004  Score=52.34  Aligned_cols=23  Identities=30%  Similarity=0.455  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|||||||++.+.+-.
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999998753

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.98  E-value=0.00037  Score=53.23  Aligned_cols=23  Identities=35%  Similarity=0.419  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|||||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998754

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.98  E-value=0.00037  Score=53.48  Aligned_cols=23  Identities=35%  Similarity=0.466  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|||||||++.+.+-.
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            46899999999999999999854

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.97  E-value=0.00043  Score=50.62  Aligned_cols=22  Identities=27%  Similarity=0.501  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      -.|+|+|++||||||+++.|.+
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999975

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.96  E-value=0.00046  Score=55.20  Aligned_cols=24  Identities=38%  Similarity=0.400  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSF   40 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~   40 (216)
                      .++|+|++|+|||||+|.|.+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            579999999999999999998654

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.96  E-value=0.00044  Score=52.31  Aligned_cols=23  Identities=26%  Similarity=0.275  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|||||||++.+.+-.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999998754

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.96  E-value=0.00039  Score=50.58  Aligned_cols=22  Identities=36%  Similarity=0.634  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .++|+|++|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            4789999999999999998764

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.95  E-value=0.00044  Score=52.47  Aligned_cols=23  Identities=30%  Similarity=0.297  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|||||||++.+.+-.
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998754

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.95  E-value=0.00041  Score=53.17  Aligned_cols=23  Identities=35%  Similarity=0.424  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|||||||++.+.+-.
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Confidence            46899999999999999998754

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=96.95  E-value=0.00049  Score=50.60  Aligned_cols=23  Identities=17%  Similarity=0.299  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      ..|+|+|++|||||||++.|.+.
T Consensus         7 ~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            7 FVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            56899999999999999998764

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.95  E-value=0.00047  Score=51.70  Aligned_cols=23  Identities=30%  Similarity=0.498  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|||||||++.+.+-.
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998754

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.95  E-value=0.00041  Score=52.39  Aligned_cols=23  Identities=30%  Similarity=0.406  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|||||||++.+.+-.
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999754

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.94  E-value=0.00043  Score=52.85  Aligned_cols=23  Identities=35%  Similarity=0.333  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|||||||++.+.+-.
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998754

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.93  E-value=0.00047  Score=52.44  Aligned_cols=22  Identities=32%  Similarity=0.382  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .++|+|++|+|||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999985

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.93  E-value=0.00041  Score=51.26  Aligned_cols=22  Identities=23%  Similarity=0.341  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .++|+|++|||||||++.+.+.
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999875

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.92  E-value=0.00046  Score=52.47  Aligned_cols=23  Identities=43%  Similarity=0.644  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|||||||++.+.+-.
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998753

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.92  E-value=0.00055  Score=51.75  Aligned_cols=21  Identities=24%  Similarity=0.616  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHH
Q 027949           16 IKLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~   36 (216)
                      ..|+|+|++||||||+++.|.
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            468999999999999999998

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.92  E-value=0.0005  Score=52.82  Aligned_cols=22  Identities=27%  Similarity=0.412  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .++|+|++|||||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999985

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.92  E-value=0.00048  Score=52.73  Aligned_cols=22  Identities=32%  Similarity=0.471  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .++|+|++|||||||++.+.+.
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHHh
Confidence            5899999999999999999863

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.92  E-value=0.00062  Score=48.50  Aligned_cols=22  Identities=36%  Similarity=0.416  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ..|+|.|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999986

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.91  E-value=0.0005  Score=48.64  Aligned_cols=22  Identities=23%  Similarity=0.228  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .|+|.|++||||||+.+.|...
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998653

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.91  E-value=0.00053  Score=48.47  Aligned_cols=20  Identities=30%  Similarity=0.373  Sum_probs=18.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHH
Q 027949           16 IKLLLIGDSGVGKSCLLLRF   35 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l   35 (216)
                      +-|+|.|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999999

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.89  E-value=0.00054  Score=50.55  Aligned_cols=22  Identities=23%  Similarity=0.480  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ++|+|+|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999854

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.89  E-value=0.00054  Score=52.95  Aligned_cols=23  Identities=35%  Similarity=0.450  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|||||||++.+.+-.
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998754

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.89  E-value=0.00054  Score=52.41  Aligned_cols=22  Identities=27%  Similarity=0.335  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .++|+|++|||||||++.+.+-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5799999999999999999975

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.87  E-value=0.00057  Score=53.44  Aligned_cols=22  Identities=32%  Similarity=0.282  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .++|+|++|+|||||++.|.+-
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhhh
Confidence            6799999999999999999864

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.87  E-value=0.00057  Score=52.61  Aligned_cols=23  Identities=26%  Similarity=0.322  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|||||||++.+.+-.
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998754

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.86  E-value=0.00061  Score=50.28  Aligned_cols=22  Identities=32%  Similarity=0.510  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ++|+|+|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999964

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.86  E-value=0.00053  Score=52.22  Aligned_cols=23  Identities=35%  Similarity=0.420  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|||||||++.+.+-.
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999764

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.85  E-value=0.00055  Score=52.54  Aligned_cols=23  Identities=39%  Similarity=0.475  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|||||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998754

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.83  E-value=0.00052  Score=49.18  Aligned_cols=23  Identities=30%  Similarity=0.476  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -.++++|++|+|||||++.+.+.
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            45899999999999999998764

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.82  E-value=0.00079  Score=50.38  Aligned_cols=26  Identities=27%  Similarity=0.408  Sum_probs=22.3

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcC
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      ..-.-|+|.|+.||||||+++.|.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            33467899999999999999999875

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.81  E-value=0.00067  Score=49.55  Aligned_cols=23  Identities=26%  Similarity=0.398  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      ..|+|+|++||||||+.+.|...
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998653

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.80  E-value=0.0007  Score=51.85  Aligned_cols=23  Identities=35%  Similarity=0.560  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|||||||++.+.+..
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999999764

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.80  E-value=0.00072  Score=48.46  Aligned_cols=23  Identities=30%  Similarity=0.332  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .-++|+|++|+|||||+++|...
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            46899999999999999999864

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.80  E-value=0.00066  Score=49.60  Aligned_cols=22  Identities=32%  Similarity=0.520  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ..|+|+|++||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4699999999999999999986

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.80  E-value=0.00068  Score=49.51  Aligned_cols=23  Identities=30%  Similarity=0.341  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      --|+|+|++||||||+.+.|.+.
T Consensus        26 ~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           26 CVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            56899999999999999998754

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.80  E-value=0.00042  Score=51.85  Aligned_cols=22  Identities=27%  Similarity=0.379  Sum_probs=14.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHH-cC
Q 027949           17 KLLLIGDSGVGKSCLLLRFS-DG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~-~~   38 (216)
                      -++|+|++||||||+++.|. +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            57999999999999999999 64

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.80  E-value=0.00072  Score=48.19  Aligned_cols=23  Identities=26%  Similarity=0.320  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .-|+|.|++||||||+.+.|...
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            35899999999999999999764

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.79  E-value=0.00067  Score=53.31  Aligned_cols=25  Identities=20%  Similarity=0.098  Sum_probs=21.7

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcC
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      ...-|+|+|++|||||||++.|.+.
T Consensus        89 ~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           89 VPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCchHHHHHHHHHhh
Confidence            3467899999999999999998864

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.79  E-value=0.00089  Score=48.99  Aligned_cols=22  Identities=32%  Similarity=0.439  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      +.|+|+|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999999976

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.79  E-value=0.00078  Score=50.46  Aligned_cols=23  Identities=22%  Similarity=0.475  Sum_probs=20.6

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHc
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ...|+|+|.+||||||+.+.|..
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999865

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.78  E-value=0.00082  Score=49.05  Aligned_cols=22  Identities=32%  Similarity=0.585  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      -.|+|+|++||||||+.+.|..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4789999999999999999874

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.78  E-value=0.00077  Score=49.04  Aligned_cols=21  Identities=33%  Similarity=0.572  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~   37 (216)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            589999999999999999875

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.77  E-value=0.00094  Score=48.98  Aligned_cols=22  Identities=18%  Similarity=0.105  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ..|+|.|.+||||||+.+.|..
T Consensus        11 ~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           11 KFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            5799999999999999999875

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.77  E-value=0.00024  Score=55.63  Aligned_cols=23  Identities=43%  Similarity=0.546  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|||||||+|.|.+..
T Consensus       175 ~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          175 TTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHhcccc
Confidence            68999999999999999998754

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.77  E-value=0.00079  Score=49.98  Aligned_cols=22  Identities=27%  Similarity=0.394  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ..|+|+|++||||||+.+.|.+
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999865

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.77  E-value=0.00081  Score=52.55  Aligned_cols=24  Identities=42%  Similarity=0.420  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSF   40 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~   40 (216)
                      .++++|++|+|||||++.|.+...
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             eEEEECCCCCcHHHHHHHhccccc
Confidence            578999999999999999987653

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.75  E-value=0.00069  Score=50.28  Aligned_cols=22  Identities=23%  Similarity=0.229  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -++|+|++|||||||++.+.+.
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4799999999999999999874

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.75  E-value=0.00082  Score=49.53  Aligned_cols=22  Identities=27%  Similarity=0.563  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      +.|+|+|+|||||+|....|..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.75  E-value=0.0014  Score=47.83  Aligned_cols=23  Identities=17%  Similarity=0.429  Sum_probs=20.4

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHc
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ...|+|.|.+||||||+.+.|..
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999999874

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.74  E-value=0.00076  Score=54.14  Aligned_cols=24  Identities=21%  Similarity=0.367  Sum_probs=21.7

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcC
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .-+++|+|++|+|||||++.|.+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHH
Confidence            468899999999999999999875

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.72  E-value=0.00083  Score=52.52  Aligned_cols=22  Identities=50%  Similarity=0.792  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++++|++|+|||||+|.|. ..
T Consensus       167 i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-SC
T ss_pred             EEEEECCCCCCHHHHHHHHH-Hh
Confidence            57999999999999999999 54

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.72  E-value=0.00077  Score=53.92  Aligned_cols=23  Identities=39%  Similarity=0.557  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      -++|+|++|||||||++.+.+-.
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            36899999999999999999864

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.71  E-value=0.00099  Score=47.96  Aligned_cols=22  Identities=32%  Similarity=0.460  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ..|+|.|++||||||+.+.|..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999865

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.71  E-value=0.00061  Score=53.36  Aligned_cols=22  Identities=41%  Similarity=0.492  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .++|+|++|||||||++.|.+-
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTS
T ss_pred             EEEEECCCCchHHHHHHHHHcC
Confidence            5799999999999999999874

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.71  E-value=0.00046  Score=49.31  Aligned_cols=22  Identities=32%  Similarity=0.450  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .++|+|++|||||||++.|.+.
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999864

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.69  E-value=0.0012  Score=47.37  Aligned_cols=22  Identities=23%  Similarity=0.510  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ..|+|+|++||||||+.+.|..
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999874

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.69  E-value=0.00088  Score=49.44  Aligned_cols=22  Identities=18%  Similarity=0.388  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ++|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999865

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.68  E-value=0.00094  Score=53.52  Aligned_cols=23  Identities=35%  Similarity=0.309  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      -++|+|++|||||||++.+.+-.
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHhcCC
Confidence            36899999999999999999754

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.67  E-value=0.00094  Score=53.37  Aligned_cols=23  Identities=30%  Similarity=0.403  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      -++|+|++|||||||++.+.+-.
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            36899999999999999999764

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.66  E-value=0.0013  Score=47.33  Aligned_cols=22  Identities=18%  Similarity=0.386  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ..|+|.|.+||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            6 ALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999865

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.66  E-value=0.00091  Score=51.97  Aligned_cols=23  Identities=30%  Similarity=0.498  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|+|||||++.+.+-.
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999998753

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.65  E-value=0.00099  Score=50.33  Aligned_cols=22  Identities=18%  Similarity=0.290  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ..|+|+|+.|||||||++.|.+
T Consensus        26 ~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           26 FLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5699999999999999999876

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.65  E-value=0.0012  Score=47.97  Aligned_cols=24  Identities=25%  Similarity=0.277  Sum_probs=21.6

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcC
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      ...|+|+|.+||||||+.+.|...
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC
Confidence            468999999999999999999875

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.65  E-value=0.001  Score=53.61  Aligned_cols=23  Identities=35%  Similarity=0.489  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      -++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            36899999999999999999864

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.64  E-value=0.0011  Score=47.60  Aligned_cols=22  Identities=23%  Similarity=0.241  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ..|+|.|++||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999865

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.64  E-value=0.001  Score=53.27  Aligned_cols=23  Identities=35%  Similarity=0.456  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      -++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHCCC
Confidence            36899999999999999999854

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.64  E-value=0.001  Score=53.25  Aligned_cols=23  Identities=39%  Similarity=0.492  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      -++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            36899999999999999999864

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.62  E-value=0.001  Score=53.21  Aligned_cols=22  Identities=36%  Similarity=0.463  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .|+|+|++|||||||++.+++.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999999763

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.61  E-value=0.00082  Score=46.83  Aligned_cols=23  Identities=30%  Similarity=0.502  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++++|++|+|||||++.+.+.-
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999998743

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.61  E-value=0.0014  Score=47.17  Aligned_cols=23  Identities=26%  Similarity=0.536  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      ..|+|+|++||||||+.+.|...
T Consensus        11 ~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           11 INILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            57999999999999999998764

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.61  E-value=0.0013  Score=46.40  Aligned_cols=21  Identities=33%  Similarity=0.314  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~   37 (216)
                      +|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999865

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.61  E-value=0.0016  Score=47.68  Aligned_cols=23  Identities=17%  Similarity=0.234  Sum_probs=21.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      ..|+|+|++||||||+.+.|.+.
T Consensus        22 ~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           22 FIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            67899999999999999999874

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.60  E-value=0.0011  Score=53.29  Aligned_cols=23  Identities=30%  Similarity=0.456  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      -++|+|++|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCcHHHHHHHHHHcCC
Confidence            36899999999999999999864

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.59  E-value=0.0012  Score=53.18  Aligned_cols=23  Identities=35%  Similarity=0.459  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      -++++|++|||||||++.+.+-.
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            46899999999999999999854

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.58  E-value=0.0014  Score=46.99  Aligned_cols=22  Identities=27%  Similarity=0.466  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ..|+++|++||||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999864

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.58  E-value=0.0012  Score=50.92  Aligned_cols=21  Identities=33%  Similarity=0.547  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027949           18 LLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~   38 (216)
                      ++++|++|+|||||++.+.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            899999999999999999874

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.58  E-value=0.0016  Score=47.41  Aligned_cols=24  Identities=25%  Similarity=0.614  Sum_probs=21.0

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHc
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ..+.|+|.|++||||||+.+.|..
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999865

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.57  E-value=0.0012  Score=51.71  Aligned_cols=91  Identities=13%  Similarity=0.060  Sum_probs=48.3

Q ss_pred             EEEEEeCCCcccccc------------ccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 027949           65 KLQIWDTAGQERFRT------------ITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADM  132 (216)
Q Consensus        65 ~~~i~D~~G~~~~~~------------~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  132 (216)
                      .+.++|++|......            +.+......+.++++.|.......   ...+..+....  + ..++++||.|.
T Consensus       186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~---~~~~~~~~~~~--~-~t~iivTh~d~  259 (304)
T 1rj9_A          186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNG---LEQAKKFHEAV--G-LTGVIVTKLDG  259 (304)
T ss_dssp             SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHH---HHHHHHHHHHH--C-CSEEEEECTTS
T ss_pred             CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHH---HHHHHHHHHHc--C-CcEEEEECCcc
Confidence            456789998543211            111223345677889997655432   22233333322  2 24778899884


Q ss_pred             CCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHH
Q 027949          133 DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE  168 (216)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (216)
                      ..     ..-.+.......+.++.++.  .|+++++
T Consensus       260 ~a-----~gg~~l~i~~~~~~pi~~ig--~Ge~~~d  288 (304)
T 1rj9_A          260 TA-----KGGVLIPIVRTLKVPIKFVG--VGEGPDD  288 (304)
T ss_dssp             SC-----CCTTHHHHHHHHCCCEEEEE--CSSSTTC
T ss_pred             cc-----cccHHHHHHHHHCCCeEEEe--CCCChhh
Confidence            21     12234456667787777764  4444443

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.57  E-value=0.0017  Score=48.96  Aligned_cols=23  Identities=22%  Similarity=0.393  Sum_probs=20.9

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHc
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~   37 (216)
                      .+.|+|+|++||||||+.+.|..
T Consensus        29 ~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           29 DGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999964

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.56  E-value=0.0016  Score=47.66  Aligned_cols=22  Identities=27%  Similarity=0.356  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ..|+|.|.+||||||+.+.|..
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            5799999999999999999975

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.55  E-value=0.0013  Score=51.48  Aligned_cols=22  Identities=23%  Similarity=0.477  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      --++++|++||||||+++.|.+
T Consensus       101 ~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          101 AVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999999876

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.54  E-value=0.0019  Score=46.43  Aligned_cols=22  Identities=18%  Similarity=0.335  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ..|+|.|.+||||||+.+.|..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999864

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.53  E-value=0.00095  Score=53.22  Aligned_cols=23  Identities=22%  Similarity=0.421  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      -++++|++|||||||++.+.+-.
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            46899999999999999999764

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.53  E-value=0.0015  Score=48.41  Aligned_cols=22  Identities=32%  Similarity=0.638  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      +.|+|+|.+||||||+.+.|..
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999999865

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.52  E-value=0.0015  Score=46.69  Aligned_cols=22  Identities=36%  Similarity=0.572  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ..|+|+|++||||||+.+.|..
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHHH
Confidence            4689999999999999999874

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.52  E-value=0.0019  Score=50.83  Aligned_cols=25  Identities=20%  Similarity=0.141  Sum_probs=21.4

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHc
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ...+-|+|+|++|||||||++.|.+
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3447799999999999999999865

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.50  E-value=0.0013  Score=46.76  Aligned_cols=21  Identities=33%  Similarity=0.521  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~   37 (216)
                      .|+|+|++||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            589999999999999999865

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.50  E-value=0.0018  Score=46.57  Aligned_cols=22  Identities=23%  Similarity=0.548  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ..|+|.|.+||||||+.+.|..
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.50  E-value=0.0014  Score=49.54  Aligned_cols=21  Identities=38%  Similarity=0.631  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027949           18 LLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~   38 (216)
                      ++++|++|+|||||++.+.+.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999999864

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.49  E-value=0.0013  Score=51.52  Aligned_cols=23  Identities=22%  Similarity=0.179  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      ..|+|+|++|||||||++.|.+.
T Consensus        81 ~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           81 YIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            57899999999999999999864

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.49  E-value=0.0016  Score=48.37  Aligned_cols=21  Identities=29%  Similarity=0.433  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~   37 (216)
                      .|+|.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999864

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.48  E-value=0.0013  Score=52.10  Aligned_cols=23  Identities=17%  Similarity=0.385  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|||||||++.+.+..
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999753

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.48  E-value=0.0017  Score=46.28  Aligned_cols=23  Identities=17%  Similarity=0.290  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      ..++|+|.+|||||||+.+|...
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999998753

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.48  E-value=0.0013  Score=52.70  Aligned_cols=23  Identities=22%  Similarity=0.495  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|||||||++.+.+.-
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            68999999999999999999753

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.47  E-value=0.0023  Score=46.53  Aligned_cols=23  Identities=13%  Similarity=0.226  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      ..|+|.|.+||||||+.+.|...
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHT
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHH
Confidence            57999999999999999999865

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.46  E-value=0.0024  Score=49.55  Aligned_cols=25  Identities=20%  Similarity=0.365  Sum_probs=21.2

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHc
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~   37 (216)
                      .....|+|+|++|||||||.+.|..
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3447899999999999999988754

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.45  E-value=0.0016  Score=52.42  Aligned_cols=23  Identities=30%  Similarity=0.385  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      =.|+|+|++||||||+++.+.+.
T Consensus       137 ~~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          137 GLILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            35899999999999999999863

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.45  E-value=0.0022  Score=46.88  Aligned_cols=23  Identities=30%  Similarity=0.255  Sum_probs=20.6

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHc
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ...|+|+|++||||||+++.|.+
T Consensus        22 ~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           22 RLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999999875

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.45  E-value=0.002  Score=49.92  Aligned_cols=23  Identities=30%  Similarity=0.394  Sum_probs=20.6

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHc
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ..-|+|.|++||||||+.+.|..
T Consensus        33 ~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           33 PTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36789999999999999999975

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.43  E-value=0.0015  Score=52.86  Aligned_cols=22  Identities=41%  Similarity=0.566  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .++|+|++|||||||++.+.+-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            4799999999999999999874

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.41  E-value=0.0018  Score=48.25  Aligned_cols=22  Identities=23%  Similarity=0.579  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ..|+|.|++||||||+.+.|..
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999864

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.41  E-value=0.0019  Score=46.50  Aligned_cols=21  Identities=19%  Similarity=0.305  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~   37 (216)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999875

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.41  E-value=0.0018  Score=49.23  Aligned_cols=21  Identities=19%  Similarity=0.374  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~   37 (216)
                      -|+|+|++|||||||.+.|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999865

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.40  E-value=0.00093  Score=53.38  Aligned_cols=23  Identities=22%  Similarity=0.436  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      -++++|++|||||||++.+.+-.
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            46899999999999999999864

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.39  E-value=0.0017  Score=53.10  Aligned_cols=22  Identities=32%  Similarity=0.385  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -|+|+|++|||||||++.+++.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999874

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.38  E-value=0.002  Score=45.97  Aligned_cols=23  Identities=30%  Similarity=0.592  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -.++|.|++|+|||++++.+...
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            45799999999999999998754

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.37  E-value=0.003  Score=45.38  Aligned_cols=23  Identities=35%  Similarity=0.502  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      ..|+|+|.+||||||+.+.|...
T Consensus        14 ~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           14 IVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHH
Confidence            67899999999999999998653

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.36  E-value=0.00077  Score=49.52  Aligned_cols=21  Identities=29%  Similarity=0.471  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~   37 (216)
                      -|+|.|.+||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            479999999999999999875

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.35  E-value=0.0023  Score=48.58  Aligned_cols=21  Identities=29%  Similarity=0.360  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHH
Q 027949           16 IKLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~   36 (216)
                      ..|+|+|++||||||+.+.|.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999998

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.34  E-value=0.002  Score=46.02  Aligned_cols=21  Identities=24%  Similarity=0.181  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~   37 (216)
                      -.+|+|+.|+|||||++.|..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            358999999999999999865

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.33  E-value=0.002  Score=47.59  Aligned_cols=22  Identities=32%  Similarity=0.424  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      +.|+|+|.+||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999864

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.32  E-value=0.002  Score=51.51  Aligned_cols=22  Identities=23%  Similarity=0.477  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      --|+|+|++||||||+++.|.+
T Consensus       158 ~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          158 AVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHHh
Confidence            4689999999999999999876

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.32  E-value=0.0021  Score=49.41  Aligned_cols=21  Identities=38%  Similarity=0.631  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027949           18 LLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~   38 (216)
                      ++|+|++|+|||||++.+.+.
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHHH
Confidence            899999999999999999864

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.32  E-value=0.0021  Score=47.58  Aligned_cols=22  Identities=32%  Similarity=0.554  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -++|+|++|+|||||+..+...
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4688999999999999999853

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.31  E-value=0.0021  Score=46.41  Aligned_cols=22  Identities=18%  Similarity=0.379  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ..|+|.|++||||||+.+.|..
T Consensus        10 ~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A           10 NIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999864

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.30  E-value=0.0021  Score=50.91  Aligned_cols=22  Identities=32%  Similarity=0.537  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .++++|++|+|||||++.+.+.
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            3799999999999999999874

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.30  E-value=0.0024  Score=45.63  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ..|+|+|.+||||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999876

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.29  E-value=0.0024  Score=45.08  Aligned_cols=21  Identities=14%  Similarity=0.436  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~   37 (216)
                      .|+|.|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999865

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.29  E-value=0.002  Score=48.89  Aligned_cols=24  Identities=33%  Similarity=0.386  Sum_probs=21.1

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcC
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      ...|+++|++||||||+.+.|...
T Consensus        32 ~~~i~l~G~~GsGKSTla~~L~~~   55 (253)
T 2p5t_B           32 PIAILLGGQSGAGKTTIHRIKQKE   55 (253)
T ss_dssp             CEEEEEESCGGGTTHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            368999999999999999998753

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.28  E-value=0.0021  Score=47.64  Aligned_cols=22  Identities=18%  Similarity=0.312  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ..|+|+|++||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999864

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.28  E-value=0.002  Score=54.07  Aligned_cols=23  Identities=17%  Similarity=0.239  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++||||||+++.+++.-
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            48999999999999999998754

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.26  E-value=0.0016  Score=51.19  Aligned_cols=24  Identities=33%  Similarity=0.390  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      --++|+|..|||||||++.+.+..
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhc
Confidence            457899999999999999999753

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.25  E-value=0.0023  Score=53.25  Aligned_cols=93  Identities=16%  Similarity=0.153  Sum_probs=50.5

Q ss_pred             EEEEEEeCCCcccccccc-----------cccc-ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027949           64 IKLQIWDTAGQERFRTIT-----------TAYY-RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKAD  131 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~-----------~~~~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  131 (216)
                      +.+.|+||+|........           ..+. ..-+-+++++|......   .......+....  + ...+|+||.|
T Consensus       376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~---al~~ak~f~~~~--~-itgvIlTKLD  449 (503)
T 2yhs_A          376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN---AVSQAKLFHEAV--G-LTGITLTKLD  449 (503)
T ss_dssp             CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHH---HHHHHHHHHHHT--C-CSEEEEECGG
T ss_pred             CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHH---HHHHHHHHHhhc--C-CCEEEEEcCC
Confidence            457789999964322111           0011 12356788999765432   222233343332  2 2357899999


Q ss_pred             CCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q 027949          132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEV  169 (216)
Q Consensus       132 l~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  169 (216)
                      -.     ...-.+..++...+.++.++  -+|++++++
T Consensus       450 ~t-----akgG~~lsi~~~~~~PI~fi--g~Ge~vdDL  480 (503)
T 2yhs_A          450 GT-----AKGGVIFSVADQFGIPIRYI--GVGERIEDL  480 (503)
T ss_dssp             GC-----SCCTHHHHHHHHHCCCEEEE--ECSSSGGGE
T ss_pred             Cc-----ccccHHHHHHHHHCCCEEEE--ecCCChhhc
Confidence            42     12334666777788887775  455555554

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.23  E-value=0.0024  Score=46.20  Aligned_cols=22  Identities=23%  Similarity=0.460  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ..|+|.|.+||||||+.+.|..
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999865

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.23  E-value=0.0033  Score=46.35  Aligned_cols=22  Identities=36%  Similarity=0.501  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      +.|+|.|.+||||||+.+.|..
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999999975

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.22  E-value=0.0021  Score=53.16  Aligned_cols=23  Identities=22%  Similarity=0.446  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|||||||++.|++-.
T Consensus       140 ~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          140 RVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCcc
Confidence            57999999999999999998754

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.22  E-value=0.0032  Score=47.97  Aligned_cols=22  Identities=32%  Similarity=0.540  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ..|+|.|.+||||||+.+.|..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            5789999999999999999875

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.22  E-value=0.0027  Score=45.47  Aligned_cols=21  Identities=38%  Similarity=0.564  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~   37 (216)
                      .|+|+|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999865

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.19  E-value=0.0044  Score=45.96  Aligned_cols=20  Identities=20%  Similarity=0.509  Sum_probs=17.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 027949           18 LLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~   37 (216)
                      |+|+|+|||||+|....|..
T Consensus        32 I~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           32 IFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             EEEECCTTCCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56789999999999998875

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.19  E-value=0.002  Score=46.00  Aligned_cols=22  Identities=23%  Similarity=0.311  Sum_probs=15.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ..|+|.|.+||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999864

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.19  E-value=0.0027  Score=46.50  Aligned_cols=22  Identities=23%  Similarity=0.279  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ..|+|.|.+||||||+.+.|..
T Consensus        10 ~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A           10 ALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999875

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.19  E-value=0.0033  Score=47.61  Aligned_cols=24  Identities=17%  Similarity=0.207  Sum_probs=21.2

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHc
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ..+.|+|.|.+||||||+.+.|..
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            447899999999999999998865

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.17  E-value=0.0028  Score=50.53  Aligned_cols=23  Identities=39%  Similarity=0.611  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      +++++|++|+|||||++.+.+..
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999999864

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.16  E-value=0.0025  Score=49.38  Aligned_cols=22  Identities=23%  Similarity=0.366  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -++|+|++|+|||||+..+.+.
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4689999999999999998764

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.14  E-value=0.003  Score=47.84  Aligned_cols=23  Identities=26%  Similarity=0.475  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -.|++.|++|+|||++++.+.+.
T Consensus        46 ~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            35899999999999999999764

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.13  E-value=0.0037  Score=44.06  Aligned_cols=22  Identities=41%  Similarity=0.469  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      -.|+|.|.+||||||+.+.|..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999865

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.12  E-value=0.0054  Score=42.15  Aligned_cols=23  Identities=17%  Similarity=0.290  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      ..|++.|++|+|||++.+.+...
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CcEEEECCCCccHHHHHHHHHHh
Confidence            35899999999999999988754

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.12  E-value=0.0057  Score=47.20  Aligned_cols=24  Identities=42%  Similarity=0.436  Sum_probs=21.2

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHc
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ..+.|+|.|.+||||||+.+.|..
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999999873

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.08  E-value=0.0035  Score=52.99  Aligned_cols=23  Identities=22%  Similarity=0.330  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++++|++|||||||++.|.+..
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999999854

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.08  E-value=0.0034  Score=46.14  Aligned_cols=22  Identities=32%  Similarity=0.483  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      .-|+|+|.+||||||+.+.|..
T Consensus        26 ~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           26 LTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999999865

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.06  E-value=0.0035  Score=46.06  Aligned_cols=21  Identities=24%  Similarity=0.207  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~   37 (216)
                      -++|+|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            479999999999999999987

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.05  E-value=0.0036  Score=45.52  Aligned_cols=23  Identities=39%  Similarity=0.543  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -.+++.|++|+|||+|++.+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998764

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.05  E-value=0.004  Score=43.25  Aligned_cols=19  Identities=47%  Similarity=0.635  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 027949           18 LLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~   36 (216)
                      .+|+|+.|+||||++.++.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4799999999999999974

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.05  E-value=0.0036  Score=46.77  Aligned_cols=22  Identities=14%  Similarity=0.158  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -++|+|++|+|||||+..+...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4689999999999999999874

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.04  E-value=0.0028  Score=44.99  Aligned_cols=23  Identities=30%  Similarity=0.549  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -.++|.|++|+|||++++.+...
T Consensus        44 ~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           44 NNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             CEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            45799999999999999988754

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.04  E-value=0.0035  Score=46.52  Aligned_cols=23  Identities=17%  Similarity=0.231  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -.++|.|++|+|||++++.+...
T Consensus        53 ~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           53 QAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998753

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.04  E-value=0.0036  Score=47.51  Aligned_cols=22  Identities=23%  Similarity=0.327  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      -.|+|+|++||||||+.+.|..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999865

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.02  E-value=0.0032  Score=53.15  Aligned_cols=23  Identities=30%  Similarity=0.476  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      -++++|++|||||||++.|.+..
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            46899999999999999999854

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.00  E-value=0.0036  Score=52.00  Aligned_cols=21  Identities=33%  Similarity=0.461  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~   37 (216)
                      .++|+|++|||||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            468999999999999999976

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=95.98  E-value=0.0059  Score=45.62  Aligned_cols=23  Identities=17%  Similarity=0.274  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .-|+|.|++||||||+++.|...
T Consensus        27 ~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           27 AFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            67899999999999999998754

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=95.97  E-value=0.0045  Score=46.44  Aligned_cols=23  Identities=22%  Similarity=0.329  Sum_probs=20.6

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHc
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~   37 (216)
                      .+.|+|.|++||||||+.+.|..
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            37899999999999999999864

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.94  E-value=0.004  Score=53.35  Aligned_cols=23  Identities=35%  Similarity=0.498  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|+|||||++.|.+..
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            47999999999999999999854

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=95.92  E-value=0.0055  Score=44.51  Aligned_cols=25  Identities=20%  Similarity=0.242  Sum_probs=21.9

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcC
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      ..+.|+|+|.+||||||+.+.|...
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHh
Confidence            4578999999999999999998753

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=95.91  E-value=0.016  Score=47.72  Aligned_cols=24  Identities=21%  Similarity=0.198  Sum_probs=20.6

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHH
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~   36 (216)
                      ....-|.|+|+.++|||+|+|.|+
T Consensus        65 ~~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           65 KEVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             CceEEEEEECCCCCchhHHHHHHH
Confidence            466778899999999999999664

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.91  E-value=0.0054  Score=47.53  Aligned_cols=22  Identities=36%  Similarity=0.416  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ..|+|+|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999976

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.90  E-value=0.0043  Score=50.00  Aligned_cols=22  Identities=23%  Similarity=0.249  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      -.++|+|++|+|||||++.+.+
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3679999999999999999986

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=95.88  E-value=0.0044  Score=50.96  Aligned_cols=23  Identities=39%  Similarity=0.475  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      +++|+|++|+|||||++.+.+..
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            67999999999999999998864

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=95.82  E-value=0.0044  Score=52.87  Aligned_cols=23  Identities=30%  Similarity=0.375  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++++|++|+|||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhcc
Confidence            68999999999999999998753

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=95.81  E-value=0.005  Score=52.53  Aligned_cols=23  Identities=35%  Similarity=0.449  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++++|++|+|||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            67999999999999999998753

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.81  E-value=0.0057  Score=42.14  Aligned_cols=24  Identities=21%  Similarity=0.238  Sum_probs=21.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      ..|++.|++|+|||++.+.+....
T Consensus        25 ~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           25 IAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCEEEECCCCCCHHHHHHHHHHhC
Confidence            458999999999999999998654

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.80  E-value=0.0042  Score=45.57  Aligned_cols=21  Identities=29%  Similarity=0.455  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~   37 (216)
                      .+++.|+||+|||+++.++.+
T Consensus        60 ~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999988875

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.77  E-value=0.0052  Score=52.66  Aligned_cols=23  Identities=17%  Similarity=0.320  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|+|||||++.|.+..
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            57999999999999999998854

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.77  E-value=0.0052  Score=47.53  Aligned_cols=23  Identities=35%  Similarity=0.446  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -.+++.|++|+|||++++.+.+.
T Consensus        55 ~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           55 KGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            46899999999999999999864

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.75  E-value=0.0056  Score=45.22  Aligned_cols=21  Identities=29%  Similarity=0.515  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~   37 (216)
                      -++|.|++|+|||++++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            579999999999999999865

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=95.74  E-value=0.0058  Score=46.20  Aligned_cols=23  Identities=30%  Similarity=0.430  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -.|++.|++|+|||++++.+...
T Consensus        40 ~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           40 KGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            45899999999999999999763

>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}

Probab=95.74  E-value=0.011  Score=44.08  Aligned_cols=28  Identities=18%  Similarity=-0.044  Sum_probs=21.5

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCC
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      +.+.+=|++.|+++.|||+|++++.+..
T Consensus        26 P~nkilvl~~~~~~~~~~~~~~~lf~~~   53 (233)
T 3uc9_A           26 PQNKILVLSDHPHNFLKTQFLQDLFHCS   53 (233)
T ss_dssp             CCCEEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred             CCCceEEEecCcccccHHHHHHHHhccc
Confidence            3444555555999999999999999874

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=95.72  E-value=0.0056  Score=46.98  Aligned_cols=23  Identities=30%  Similarity=0.437  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -.++|.|++|+|||++++.+...
T Consensus        52 ~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           52 KGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             SEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            45899999999999999999764

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.71  E-value=0.0062  Score=51.44  Aligned_cols=24  Identities=17%  Similarity=0.364  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSF   40 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~   40 (216)
                      .++|+|+.|+|||||++.|.+...
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~~  337 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVEE  337 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999998643

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.71  E-value=0.0053  Score=51.85  Aligned_cols=24  Identities=17%  Similarity=0.303  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSF   40 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~   40 (216)
                      .++|+|++|+|||||++.|.+...
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~~  319 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEIT  319 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999998543

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.70  E-value=0.0067  Score=45.36  Aligned_cols=24  Identities=25%  Similarity=0.454  Sum_probs=20.3

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHc
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ..+++.|+|++||||||+.+.|..
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cccceeeECCCCCCHHHHHHHHHH
Confidence            348899999999999999998865

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=95.70  E-value=0.0061  Score=44.43  Aligned_cols=21  Identities=29%  Similarity=0.564  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027949           18 LLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~   38 (216)
                      ++|.|++|+|||++++.+...
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999998753

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.68  E-value=0.0061  Score=48.88  Aligned_cols=19  Identities=37%  Similarity=0.545  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 027949           18 LLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~   36 (216)
                      .+|+|+.||||||+++.++
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4599999999999999986

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.68  E-value=0.0056  Score=47.06  Aligned_cols=21  Identities=33%  Similarity=0.458  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~   37 (216)
                      -++|+|++|+|||||+..+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999999875

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.66  E-value=0.0066  Score=52.03  Aligned_cols=24  Identities=17%  Similarity=0.364  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSF   40 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~   40 (216)
                      .++|+|+.|+|||||++.|.+...
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~~  407 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVEE  407 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            478999999999999999998643

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.65  E-value=0.0061  Score=47.44  Aligned_cols=23  Identities=26%  Similarity=0.439  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -.|++.|++|+|||++++.+.+.
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCcCHHHHHHHHHHH
Confidence            35899999999999999999864

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.62  E-value=0.005  Score=52.70  Aligned_cols=23  Identities=26%  Similarity=0.397  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++++|++|+|||||++.+.+-.
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            67999999999999999998743

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.58  E-value=0.0063  Score=47.36  Aligned_cols=85  Identities=13%  Similarity=0.090  Sum_probs=46.3

Q ss_pred             EEEEEEeCCCccccccc--c--ccccc--cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027949           64 IKLQIWDTAGQERFRTI--T--TAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR  137 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~--~--~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  137 (216)
                      +.+.|+||+|.......  .  ...+.  ..+.+++|+|++..  ...+..+...+..    -...-+|+||.|...   
T Consensus       183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~----l~~~giVltk~D~~~---  253 (296)
T 2px0_A          183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS----VPVNQYIFTKIDETT---  253 (296)
T ss_dssp             SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS----SCCCEEEEECTTTCS---
T ss_pred             CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc----CCCCEEEEeCCCccc---
Confidence            57889999997543221  1  11222  35678888987643  2233333222221    112356679999632   


Q ss_pred             ccChHHHHHHHHHhCCeEEEEe
Q 027949          138 AVPTSKGQALADEYGIKFFETS  159 (216)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~S  159 (216)
                        ....+...+...+.++..++
T Consensus       254 --~~g~~~~~~~~~~~pi~~i~  273 (296)
T 2px0_A          254 --SLGSVFNILAESKIGVGFMT  273 (296)
T ss_dssp             --CCHHHHHHHHTCSCCCSEEC
T ss_pred             --chhHHHHHHHHHCcCEEEEE
Confidence              12355666777787766554

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.58  E-value=0.0079  Score=44.99  Aligned_cols=25  Identities=20%  Similarity=0.219  Sum_probs=21.4

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHc
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~   37 (216)
                      .....|+|+|++||||||+.+.|..
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3446799999999999999999875

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.57  E-value=0.0067  Score=49.53  Aligned_cols=23  Identities=22%  Similarity=0.301  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .-|+|+|++||||||+.+.|...
T Consensus       259 ~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          259 EVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTGG
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            56889999999999999999753

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.57  E-value=0.0066  Score=47.12  Aligned_cols=23  Identities=26%  Similarity=0.179  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .-+++.|+||+|||+|.+.+...
T Consensus        37 ~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           37 LILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            56788899999999999999764

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.55  E-value=0.0053  Score=46.72  Aligned_cols=25  Identities=20%  Similarity=0.255  Sum_probs=21.6

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcC
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      ....|+|.|..||||||+++.|...
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            4478999999999999999988754

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.55  E-value=0.0069  Score=47.52  Aligned_cols=22  Identities=27%  Similarity=0.520  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .++|.|++|+|||+|++.+.+.
T Consensus        39 ~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           39 PIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             SEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4799999999999999998763

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.55  E-value=0.0071  Score=51.83  Aligned_cols=23  Identities=26%  Similarity=0.573  Sum_probs=20.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCC
Q 027949           18 LLLIGDSGVGKSCLLLRFSDGSF   40 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~~~   40 (216)
                      ++|+|++|+|||||++.|.+...
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~~  403 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGALK  403 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCCcHHHHHHHHhcCCC
Confidence            69999999999999999998653

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.54  E-value=0.0075  Score=47.16  Aligned_cols=93  Identities=20%  Similarity=0.144  Sum_probs=51.5

Q ss_pred             EEEEEEeCCCcccccccc-------cc-----ccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027949           64 IKLQIWDTAGQERFRTIT-------TA-----YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKAD  131 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~-------~~-----~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  131 (216)
                      +.+.|+|+||........       ..     .....+.+++|+|+....  ..+. ....+....   ...-+|+||.|
T Consensus       187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~-~a~~~~~~~---~i~gvVlTk~D  260 (306)
T 1vma_A          187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLV-QAKIFKEAV---NVTGIILTKLD  260 (306)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHH-HHHHHHHHS---CCCEEEEECGG
T ss_pred             CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHH-HHHHHHhcC---CCCEEEEeCCC
Confidence            467899999963221110       00     112467889999986432  1222 122333321   23356789999


Q ss_pred             CCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q 027949          132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEV  169 (216)
Q Consensus       132 l~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  169 (216)
                      ...     ..-.+..+....+.|+.++..  |+.++++
T Consensus       261 ~~~-----~gG~~l~~~~~~~~Pi~~i~~--Ge~~~dl  291 (306)
T 1vma_A          261 GTA-----KGGITLAIARELGIPIKFIGV--GEKAEDL  291 (306)
T ss_dssp             GCS-----CTTHHHHHHHHHCCCEEEEEC--SSSGGGE
T ss_pred             Ccc-----chHHHHHHHHHHCCCEEEEeC--CCChhhc
Confidence            532     223467778888888887753  4444443

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=95.52  E-value=0.0043  Score=52.89  Aligned_cols=22  Identities=32%  Similarity=0.363  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .++++|++|+|||||++.+.+-
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~  390 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRF  390 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            5799999999999999988864

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.51  E-value=0.0089  Score=43.45  Aligned_cols=21  Identities=29%  Similarity=0.336  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~   37 (216)
                      .|.|.|++||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999865

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.50  E-value=0.011  Score=47.09  Aligned_cols=24  Identities=29%  Similarity=0.617  Sum_probs=20.6

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHc
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ....|+++|++|+||||+.+.|..
T Consensus        23 ~~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           23 YRVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHH
Confidence            346899999999999999987755

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.42  E-value=0.0058  Score=52.19  Aligned_cols=22  Identities=27%  Similarity=0.445  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .++++|++|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRL  392 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6799999999999999999874

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.41  E-value=0.0068  Score=48.03  Aligned_cols=20  Identities=35%  Similarity=0.587  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 027949           18 LLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~   37 (216)
                      ++|.|++|+||||+++.+.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999999877

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.36  E-value=0.01  Score=43.41  Aligned_cols=19  Identities=47%  Similarity=0.635  Sum_probs=16.8

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 027949           18 LLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~   36 (216)
                      .+|+|+.|+||||++.++.
T Consensus        26 ~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            4788999999999999873

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.35  E-value=0.0094  Score=46.13  Aligned_cols=23  Identities=35%  Similarity=0.599  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      ..+++.|++|+|||++++.+...
T Consensus        51 ~~vll~G~~GtGKT~la~~la~~   73 (310)
T 1ofh_A           51 KNILMIGPTGVGKTEIARRLAKL   73 (310)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998753

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.34  E-value=0.0092  Score=44.55  Aligned_cols=21  Identities=33%  Similarity=0.472  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~   37 (216)
                      -++|+|++|+|||||+..++.
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            368999999999999877754

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.34  E-value=0.0095  Score=46.21  Aligned_cols=22  Identities=23%  Similarity=0.640  Sum_probs=19.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ..++|.|++|+|||++++.+..
T Consensus        68 ~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           68 LHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999987654

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.32  E-value=0.0086  Score=47.72  Aligned_cols=23  Identities=17%  Similarity=0.336  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -.++|.|++|+|||||++.+.+.
T Consensus        46 ~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           46 NNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            35799999999999999998763

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.31  E-value=0.014  Score=44.45  Aligned_cols=25  Identities=28%  Similarity=0.470  Sum_probs=21.8

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcC
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      ....+++.|++|+|||++++.+...
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            4467999999999999999999864

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.30  E-value=0.011  Score=43.17  Aligned_cols=24  Identities=42%  Similarity=0.631  Sum_probs=21.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      ..|+|+|++|+|||||...|...-
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            468999999999999999998653

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.30  E-value=0.0094  Score=47.13  Aligned_cols=21  Identities=29%  Similarity=0.608  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027949           18 LLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~   38 (216)
                      +++.|++|+||||+++.+.+.
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            799999999999999998765

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.29  E-value=0.0098  Score=46.16  Aligned_cols=23  Identities=30%  Similarity=0.498  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -.++|+|++|+|||++++.+...
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHH
Confidence            46899999999999999998764

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.27  E-value=0.0091  Score=47.58  Aligned_cols=23  Identities=22%  Similarity=0.205  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      -+.|+|++|+|||||+..++...
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998753

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.26  E-value=0.01  Score=47.49  Aligned_cols=22  Identities=27%  Similarity=0.483  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .++|.|++|+||||+++.+.+.
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999864

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.22  E-value=0.01  Score=46.66  Aligned_cols=23  Identities=35%  Similarity=0.482  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -.|++.|++|+|||+|++.+...
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHH
Confidence            46899999999999999999864

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.22  E-value=0.011  Score=48.45  Aligned_cols=23  Identities=30%  Similarity=0.520  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      --|++.|+||+|||+|++++.+.
T Consensus       207 rGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          207 RGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999999864

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=95.18  E-value=0.069  Score=42.67  Aligned_cols=21  Identities=29%  Similarity=0.279  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~   37 (216)
                      -.+|+|+.|+||||+++.+..
T Consensus        28 ~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           28 VTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHH
Confidence            468999999999999999864

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.18  E-value=0.012  Score=46.38  Aligned_cols=23  Identities=26%  Similarity=0.547  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      ..|+|+|++|||||||...|...
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~   28 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADA   28 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998753

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.15  E-value=0.013  Score=52.77  Aligned_cols=24  Identities=29%  Similarity=0.558  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSF   40 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~   40 (216)
                      .++|+|++|+|||||++.|.++.+
T Consensus       463 ~v~LiGpNGsGKSTLLk~LagG~i  486 (986)
T 2iw3_A          463 RYGICGPNGCGKSTLMRAIANGQV  486 (986)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            479999999999999999997554

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.12  E-value=0.012  Score=48.28  Aligned_cols=23  Identities=26%  Similarity=0.340  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -.|++.|+||+|||+|++++.+.
T Consensus       216 rGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          216 KGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeeEEECcCCCCHHHHHHHHHHH
Confidence            57899999999999999999864

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.10  E-value=0.0073  Score=54.34  Aligned_cols=23  Identities=30%  Similarity=0.546  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|+|||||++.|.+..
T Consensus       701 ivaIiGpNGSGKSTLLklLaGll  723 (986)
T 2iw3_A          701 RIAVIGPNGAGKSTLINVLTGEL  723 (986)
T ss_dssp             EEEECSCCCHHHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999999854

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=95.08  E-value=0.013  Score=42.00  Aligned_cols=21  Identities=24%  Similarity=0.279  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027949           18 LLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~   38 (216)
                      ++|+|.++||||+|..++...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            689999999999999999855

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.08  E-value=0.013  Score=46.43  Aligned_cols=22  Identities=18%  Similarity=0.477  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      .-|+|+|++|||||||...|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            4689999999999999999875

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.07  E-value=0.013  Score=45.93  Aligned_cols=23  Identities=35%  Similarity=0.466  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -.|++.|++|+|||++++.+...
T Consensus        52 ~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           52 SGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            57999999999999999999764

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.05  E-value=0.013  Score=48.14  Aligned_cols=23  Identities=30%  Similarity=0.414  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      --|++.|+||+|||+|++++.+.
T Consensus       216 rGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          216 KGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            47899999999999999999864

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.04  E-value=0.0057  Score=46.54  Aligned_cols=21  Identities=33%  Similarity=0.575  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027949           18 LLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~   38 (216)
                      +++.|++|+|||++++.+...
T Consensus        47 vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999999763

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=95.04  E-value=0.0087  Score=50.67  Aligned_cols=23  Identities=30%  Similarity=0.452  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      ..|+|+|++|||||||.+.|.+.
T Consensus       370 ~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          370 FTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             EEEEEEESSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCChHHHHHHHHHHh
Confidence            56899999999999999999764

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.03  E-value=0.013  Score=46.30  Aligned_cols=21  Identities=29%  Similarity=0.643  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027949           18 LLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~   38 (216)
                      +++.|++|+|||++++.+...
T Consensus        61 ~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999998764

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=94.95  E-value=0.016  Score=45.34  Aligned_cols=23  Identities=43%  Similarity=0.634  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -.+++.|++|+|||+|+..+...
T Consensus       153 ~~lll~G~~GtGKT~La~aia~~  175 (308)
T 2qgz_A          153 KGLYLYGDMGIGKSYLLAAMAHE  175 (308)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            57899999999999999998753

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=94.94  E-value=0.0041  Score=46.46  Aligned_cols=22  Identities=32%  Similarity=0.448  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCC
Q 027949           18 LLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~~   39 (216)
                      ++|+|++|+|||||++.+.+..
T Consensus        30 ~~i~GpnGsGKSTll~~i~g~~   51 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVTAL   51 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhccc
Confidence            3689999999999999997743

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=94.94  E-value=0.012  Score=46.94  Aligned_cols=23  Identities=26%  Similarity=0.299  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -.++|.|++|+|||++++.+...
T Consensus        45 ~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           45 SNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998754

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=94.91  E-value=0.016  Score=45.34  Aligned_cols=22  Identities=18%  Similarity=0.357  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -|+|+|++|||||||...|...
T Consensus         5 ~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            5 LVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHh
Confidence            4789999999999999999764

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=94.89  E-value=0.017  Score=45.71  Aligned_cols=22  Identities=36%  Similarity=0.610  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -|+|+|++|||||||...|...
T Consensus        42 lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           42 LLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999864

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=94.88  E-value=0.014  Score=49.38  Aligned_cols=22  Identities=36%  Similarity=0.528  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .++++|++|+|||||++.+.+.
T Consensus       110 ~vll~Gp~GtGKTtlar~ia~~  131 (543)
T 3m6a_A          110 ILCLAGPPGVGKTSLAKSIAKS  131 (543)
T ss_dssp             EEEEESSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            5899999999999999998764

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=94.88  E-value=0.014  Score=48.74  Aligned_cols=22  Identities=36%  Similarity=0.585  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -|+|+|++|+|||+|++.+.+.
T Consensus        66 GvLL~GppGtGKTtLaraIa~~   87 (499)
T 2dhr_A           66 GVLLVGPPGVGKTHLARAVAGE   87 (499)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999999864

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=94.87  E-value=0.018  Score=43.13  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .-|+|.|..||||||+++.|...
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            46899999999999999998754

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=94.86  E-value=0.014  Score=46.50  Aligned_cols=22  Identities=23%  Similarity=0.625  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .++|.|++|+|||++++.+...
T Consensus        72 ~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           72 AVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998754

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.86  E-value=0.015  Score=47.07  Aligned_cols=23  Identities=26%  Similarity=0.401  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -.|++.|+||+|||.|.+++.+.
T Consensus       183 rGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          183 KGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CceEEeCCCCCCHHHHHHHHHHh
Confidence            45899999999999999999864

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=94.84  E-value=0.015  Score=46.30  Aligned_cols=23  Identities=35%  Similarity=0.466  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -.|+|.|++|+|||+|++.+...
T Consensus        85 ~~iLL~GppGtGKT~la~ala~~  107 (355)
T 2qp9_X           85 SGILLYGPPGTGKSYLAKAVATE  107 (355)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999999864

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=94.80  E-value=0.017  Score=43.83  Aligned_cols=24  Identities=33%  Similarity=0.488  Sum_probs=21.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      ..|+|.|++|+|||++.+.+....
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~~~   53 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHYLS   53 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred             CCEEEECCCCCcHHHHHHHHHHhc
Confidence            468999999999999999998654

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=94.80  E-value=0.016  Score=48.13  Aligned_cols=22  Identities=32%  Similarity=0.546  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -|+++|++|+|||+|++.+.+.
T Consensus        51 gvLL~GppGtGKT~Laraia~~   72 (476)
T 2ce7_A           51 GILLVGPPGTGKTLLARAVAGE   72 (476)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999863

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=94.79  E-value=0.016  Score=45.56  Aligned_cols=23  Identities=30%  Similarity=0.393  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      ..|+|.|++|+|||++++.+...
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            35899999999999999999654

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=94.79  E-value=0.015  Score=47.75  Aligned_cols=23  Identities=30%  Similarity=0.502  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      --++|.|++|+|||+|++.+.+.
T Consensus       131 ~~lll~Gp~G~GKTtLa~aia~~  153 (440)
T 2z4s_A          131 NPLFIYGGVGLGKTHLLQSIGNY  153 (440)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            35799999999999999998763

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=94.79  E-value=0.013  Score=46.03  Aligned_cols=23  Identities=13%  Similarity=0.027  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -.++|.|+||+|||++++.++..
T Consensus        46 ~~lli~GpPGTGKT~~v~~v~~~   68 (318)
T 3te6_A           46 KLFYITNADDSTKFQLVNDVMDE   68 (318)
T ss_dssp             CEEEEECCCSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            57899999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	216
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	1e-64
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	2e-59
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	6e-58
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	1e-57
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	2e-57
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	9e-56
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	3e-55
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	6e-55
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	2e-53
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	7e-53
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	4e-52
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	4e-50
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	2e-46
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	2e-46
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	1e-43
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	5e-43
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	5e-43
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	5e-43
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	8e-42
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	3e-41
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	1e-40
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	5e-40
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	5e-40
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	8e-40
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	6e-39
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	1e-38
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	2e-38
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	2e-38
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	2e-38
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	1e-37
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	2e-37
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	8e-37
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	2e-36
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	5e-36
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-35
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-35
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	2e-35
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	3e-35
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	5e-35
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	2e-31
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	9e-31
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	3e-30
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	3e-30
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	1e-29
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	1e-29
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	2e-29
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	4e-29
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	4e-28
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	9e-28
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-27
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	7e-26
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	3e-25
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	2e-22
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	3e-22
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	2e-21
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	2e-16
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	2e-11
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	4e-10
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	8e-08
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	5e-07
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	6e-07
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	2e-06
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	2e-06
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	1e-05
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	1e-05
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	1e-05
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	2e-05
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	3e-05
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	1e-04
d2qn6a3	205	c.37.1.8 (A:2-206) Initiation factor eIF2 gamma su	3e-04
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	5e-04

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  195 bits (496), Expect = 1e-64
 Identities = 123/170 (72%), Positives = 150/170 (88%), Gaps = 1/170 (0%)

Query: 12  YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
           YDYL KLLLIGDSGVGK+C+L RFS+ +F ++FI+TIGIDFKIRTIELDGKRIKLQIWDT
Sbjct: 3   YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 62

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKAD 131
           AGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK D
Sbjct: 63  AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 122

Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 181
           +++ KR V   +G+ LA +YGIKF ETSAK N+NVE  FF++ARDIK ++
Sbjct: 123 VND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 171

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  182 bits (462), Expect = 2e-59
 Identities = 102/167 (61%), Positives = 137/167 (82%), Gaps = 2/167 (1%)

Query: 15  LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           ++K+LLIGDSGVGKSCLL+RF +  F  SFITTIGIDFKI+T++++GK++KLQIWDTAGQ
Sbjct: 2   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 61

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
           ERFRTITTAYYRGAMGI+LVYD+TDE +F NI+ W + + +HA+D    +LVGNK+DM+ 
Sbjct: 62  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME- 120

Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 181
             R V   +G+ALA E GI F E+SAK + NV E+FF++A+ I++++
Sbjct: 121 -TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 166

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  178 bits (452), Expect = 6e-58
 Identities = 80/167 (47%), Positives = 118/167 (70%), Gaps = 1/167 (0%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           DYD+L K++LIG++GVGK+CL+ RF+ G F      TIG+DF I+T+E++G+++KLQIWD
Sbjct: 1   DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWD 60

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130
           TAGQERFR+IT +YYR A  ++L YD+T E SF  +  W+R IEQ+AS+ V  +LVGNK 
Sbjct: 61  TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKI 120

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
           D    +R V   + +  ++   + + ETSAK + NVE++F  +A  +
Sbjct: 121 D-LAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 166

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  177 bits (450), Expect = 1e-57
 Identities = 87/170 (51%), Positives = 128/170 (75%), Gaps = 2/170 (1%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIW 69
            YD   K++L+GDSGVGK+CLL+RF DG+F   +FI+T+GIDF+ + +++DG ++KLQ+W
Sbjct: 2   FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMW 61

Query: 70  DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNK 129
           DTAGQERFR++T AYYR A  +LL+YDVT+++SF+NI+ W+  I ++A  +V  +L+GNK
Sbjct: 62  DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNK 121

Query: 130 ADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 179
                 +R V    G+ LA EYG+ F ETSAKT LNV+  F +IA+++K+
Sbjct: 122 -VDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 170

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  178 bits (451), Expect = 2e-57
 Identities = 100/182 (54%), Positives = 137/182 (75%), Gaps = 1/182 (0%)

Query: 10  ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIW 69
           ++YDYL KLLLIG+SGVGKSCLLLRFSD ++T  +I+TIG+DFKI+T+ELDGK +KLQIW
Sbjct: 1   SEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIW 60

Query: 70  DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNK 129
           DTAGQERFRTIT++YYRG+ GI++VYDVTD+ SFN ++ W++ I+++A+  V K+LVGNK
Sbjct: 61  DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNK 120

Query: 130 ADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAE 189
               + KR V     +  AD   + F ETSA  + NVE+ F ++AR IK+ ++  +    
Sbjct: 121 -CDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNET 179

Query: 190 PQ 191
            Q
Sbjct: 180 TQ 181

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  173 bits (438), Expect = 9e-56
 Identities = 80/166 (48%), Positives = 113/166 (68%), Gaps = 1/166 (0%)

Query: 12  YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
           Y Y+ K ++IGD GVGKSCLL +F++  F      TIG++F  R IE+ G++IKLQIWDT
Sbjct: 1   YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 60

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKAD 131
           AGQERFR +T +YYRGA G L+VYD+T  S++N++ +W+ +     + N   IL+GNKAD
Sbjct: 61  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 120

Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
           + E++R V   + +  A+E G+ F E SAKT  NVE+ F   A+ I
Sbjct: 121 L-EAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  171 bits (435), Expect = 3e-55
 Identities = 91/170 (53%), Positives = 130/170 (76%), Gaps = 1/170 (0%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           ++DY+ K+L+IG+S VGK+  L R++D SFT +F++T+GIDFK++TI  + KRIKLQIWD
Sbjct: 1   NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWD 60

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130
           TAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   +LVGNK 
Sbjct: 61  TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKC 120

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           DM E +R V + +G+ LAD  G +FFE SAK N+NV++ F  +   I ++
Sbjct: 121 DM-EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 169

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  171 bits (433), Expect = 6e-55
 Identities = 86/170 (50%), Positives = 119/170 (70%), Gaps = 1/170 (0%)

Query: 12  YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
           YDYL K++LIGDSGVGKS LL RF+   F     +TIG++F  R+I++DGK IK QIWDT
Sbjct: 1   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 60

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKAD 131
           AGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D
Sbjct: 61  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 120

Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 181
           +    RAVPT + +A A++  + F ETSA  + NVEE F +I  +I + +
Sbjct: 121 LRH-LRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIV 169

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  167 bits (423), Expect = 2e-53
 Identities = 83/182 (45%), Positives = 123/182 (67%), Gaps = 12/182 (6%)

Query: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL----------D 60
           DYDYLIKLL +GDSGVGK+  L R++D  F   FITT+GIDF+ + +             
Sbjct: 1   DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 60

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQH-ASD 119
             ++ LQ+WDTAGQERFR++TTA++R AMG LL++D+T + SF N+RNW+  ++ +   +
Sbjct: 61  AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 120

Query: 120 NVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 179
           N + +L+GNKAD+ + +R V   + + LAD+YGI +FETSA T  NVE+   ++   I +
Sbjct: 121 NPDIVLIGNKADLPD-QREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMK 179

Query: 180 RL 181
           R+
Sbjct: 180 RM 181

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  165 bits (419), Expect = 7e-53
 Identities = 79/170 (46%), Positives = 106/170 (62%), Gaps = 1/170 (0%)

Query: 12  YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
           YD+L K L+IG++G GKSCLL +F +  F      TIG++F  + I + GK +KLQIWDT
Sbjct: 2   YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDT 61

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKAD 131
           AGQERFR++T +YYRGA G LLVYD+T   ++N + NW+ +    AS N+  IL GNK  
Sbjct: 62  AGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK-K 120

Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 181
             ++ R V   +    A E  + F ETSA T  NVEE F   AR I  ++
Sbjct: 121 DLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKI 170

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  164 bits (415), Expect = 4e-52
 Identities = 77/172 (44%), Positives = 109/172 (63%), Gaps = 3/172 (1%)

Query: 11  DYDYL--IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQI 68
           D D L  +K+L+IG+SGVGKS LLLRF+D +F      TIG+DFK++TI +DG + KL I
Sbjct: 1   DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAI 60

Query: 69  WDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGN 128
           WDTAGQERFRT+T +YYRGA G++LVYDVT   +F  + NW+  +E + + N    ++  
Sbjct: 61  WDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVG 120

Query: 129 KADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
              +D+  R V  ++G   A ++ + F E SAKT   V+  F  +   I Q 
Sbjct: 121 N-KIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT 171

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  158 bits (401), Expect = 4e-50
 Identities = 89/168 (52%), Positives = 125/168 (74%), Gaps = 1/168 (0%)

Query: 14  YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73
           YL K ++IGD+GVGKSCLLL+F+D  F      TIG++F  R + +DGK+IKLQIWDTAG
Sbjct: 2   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 61

Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133
           QE FR+IT +YYRGA G LLVYD+T   +FN++ +W+ +  QH+S N+  +L+GNK+D+ 
Sbjct: 62  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDL- 120

Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 181
           ES+R V   +G+A A E+G+ F ETSAKT  NVEE F + A++I +++
Sbjct: 121 ESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKI 168

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  149 bits (376), Expect = 2e-46
 Identities = 63/166 (37%), Positives = 101/166 (60%), Gaps = 1/166 (0%)

Query: 14  YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73
           Y  K++L+G+  VGK+ L+LR+ +  F    ITT+G  F  + + + GKR+ L IWDTAG
Sbjct: 2   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 61

Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133
           QERF  +   YYR + G +LVYD+TDE SF  ++NW++ + +   + +   +VGNK    
Sbjct: 62  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNK-IDL 120

Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 179
           E +R V   + ++ A+  G K + TSAK N  +EE+F  + + + +
Sbjct: 121 EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 166

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  148 bits (375), Expect = 2e-46
 Identities = 65/161 (40%), Positives = 100/161 (62%), Gaps = 1/161 (0%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+ +G+  VGK+ L+ RF   SF  ++  TIGIDF  +T+ L+ + I+LQ+WDTAGQER
Sbjct: 2   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK 136
           FR++  +Y R +   ++VYD+T+ +SF     WI ++      +V  +LVGNK D+   K
Sbjct: 62  FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL-ADK 120

Query: 137 RAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
           R V   +G+  A E  + F ETSAK   NV+++F  +A  +
Sbjct: 121 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  142 bits (358), Expect = 1e-43
 Identities = 67/173 (38%), Positives = 95/173 (54%), Gaps = 3/173 (1%)

Query: 10  ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIW 69
           A    L K++L+GD GVGKS L+ R+    F T    TIG++F  + +E+DG  + +QIW
Sbjct: 1   AGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIW 60

Query: 70  DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS--DNVNKILVG 127
           DTAGQERFR++ T +YRG+   LL + V D  SF N+ NW +    +A   +  +   V 
Sbjct: 61  DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVI 120

Query: 128 NKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVFFSIARDIKQ 179
               +D S+R V T + QA   + G   +FETSAK   NV   F    R +  
Sbjct: 121 LGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 173

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  140 bits (354), Expect = 5e-43
 Identities = 71/167 (42%), Positives = 102/167 (61%), Gaps = 2/167 (1%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IKL+L+G++ VGKS ++LRF    F  +   TIG  F  + + ++   +K +IWDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKAD--MD 133
           RF ++   YYR A   L+VYDVT   SF   R+W++ + + AS ++   LVGNK D   +
Sbjct: 64  RFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQE 123

Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
             +R V   +G+ LA+E G+ FFETSAKT  NV +VF  I   I  +
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  140 bits (353), Expect = 5e-43
 Identities = 73/163 (44%), Positives = 108/163 (66%), Gaps = 1/163 (0%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+L+G+S VGKS L+LRF  G F     +TIG  F  +T+ LD   +K +IWDTAGQER
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK 136
           + ++   YYRGA   ++VYD+T+E SF   +NW++ +++ AS N+   L GNK     +K
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK-ADLANK 126

Query: 137 RAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 179
           RAV   + Q+ AD+  + F ETSAKT++NV E+F +IA+ + +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  140 bits (353), Expect = 5e-43
 Identities = 62/165 (37%), Positives = 96/165 (58%), Gaps = 3/165 (1%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            K++++G  GVGKS L ++F  G+F   +  TI  DF  + IE+D     L+I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE-QHASDNVNKILVGNKADMDE 134
           +F ++   Y +   G +LVY + ++ SF +I+     I      + V  ILVGNK D++ 
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122

Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 179
            +  V +S+G+ALA+E+G  F ETSAK+   V+E+F  I R +  
Sbjct: 123 ERE-VSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNY 166

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  138 bits (347), Expect = 8e-42
 Identities = 48/189 (25%), Positives = 89/189 (47%), Gaps = 19/189 (10%)

Query: 1   MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
           MA  P         ++K +++GD  VGK+CLL+ +++ +F   ++ T+  D    ++ + 
Sbjct: 1   MAHGP------GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVG 53

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
           GK+  L ++DTAGQE +  +    Y      L+ + V + +SF N++       +  + N
Sbjct: 54  GKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPN 113

Query: 121 VNKILVGNKADMDESKR-----------AVPTSKGQALADEYG-IKFFETSAKTNLNVEE 168
           V  +L+G + D+ +  +            +   +GQ LA E G   + E SA T   ++ 
Sbjct: 114 VPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKT 173

Query: 169 VFFSIARDI 177
           VF      I
Sbjct: 174 VFDEAIIAI 182

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (341), Expect = 3e-41
 Identities = 58/164 (35%), Positives = 89/164 (54%), Gaps = 4/164 (2%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++     F   +  TI  D   + + +DG+   L I DTAGQE 
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEE 63

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDES 135
           +  +   Y R   G L V+ + +  SF +I  +   I++    D+V  +LVGNK D+   
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAAR 123

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 179
                + + Q LA  YGI + ETSAKT   VE+ F+++ R+I+Q
Sbjct: 124 TV--ESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  134 bits (337), Expect = 1e-40
 Identities = 59/167 (35%), Positives = 97/167 (58%), Gaps = 3/167 (1%)

Query: 15  LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           L K++++G  GVGKS L L+F    F   +  T   D   + + LDG+ +++ I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAGQ 62

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKILVGNKADMD 133
           E +  I   Y+R   G L V+ +T+  SF    ++   I      +NV  +LVGNK+D++
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122

Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           + ++ V   + +  AD++ + + ETSAKT  NV++VFF + R+I+ R
Sbjct: 123 DKRQ-VSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  133 bits (335), Expect = 5e-40
 Identities = 53/176 (30%), Positives = 85/176 (48%), Gaps = 13/176 (7%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+ ++  +F   +I T+  D     + +DGK + L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
            +  +    Y      L+ + +   +SF N+R       +H   N   ILVG K D+ + 
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 124

Query: 136 KRAV-----------PTSKGQALADEYG-IKFFETSAKTNLNVEEVFFSIARDIKQ 179
           K  +              +G A+A E G +K+ E SA T   ++ VF    R +  
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 180

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  133 bits (335), Expect = 5e-40
 Identities = 45/184 (24%), Positives = 79/184 (42%), Gaps = 13/184 (7%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+ ++   F + ++ T+  D    T+ + G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQE 62

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
            +  +    Y      L+ + V   SSF N++        H       +LVG + D+ + 
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122

Query: 136 KRAV-----------PTSKGQALADEY-GIKFFETSAKTNLNVEEVFFSIARDIKQRLAD 183
              +                + LA +   +K+ E SA T   ++ VF        +    
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182

Query: 184 TDSR 187
             SR
Sbjct: 183 KKSR 186

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  132 bits (332), Expect = 8e-40
 Identities = 60/169 (35%), Positives = 87/169 (51%), Gaps = 3/169 (1%)

Query: 13  DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTA 72
               KL+++G  GVGKS L ++F    F + +      D   +   +DG   +L I DTA
Sbjct: 4   SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDP-TIEDSYTKICSVDGIPARLDILDTA 62

Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKILVGNKAD 131
           GQE F  +   Y R   G LLV+ + D  SFN +      I      D+   +LVGNKAD
Sbjct: 63  GQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD 122

Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           + ES+R VP S+  A    + + +FE SAK  LNV+E F  + R +++ 
Sbjct: 123 L-ESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKY 170

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  130 bits (327), Expect = 6e-39
 Identities = 72/172 (41%), Positives = 110/172 (63%), Gaps = 6/172 (3%)

Query: 15  LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRI-KLQIWDTAG 73
           ++K++++GDSGVGK+ L+ R+ +  ++  +  TIG DF  + + +DG ++  +Q+WDTAG
Sbjct: 2   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61

Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK----ILVGNK 129
           QERF+++  A+YRGA   +LVYDVT+ SSF NI++W      HA+ N  +    +++GNK
Sbjct: 62  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 121

Query: 130 ADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVFFSIARDIKQR 180
            D +ESK+ V     Q LA   G I  F TSAK  +NV+  F  IAR   Q+
Sbjct: 122 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 173

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  129 bits (324), Expect = 1e-38
 Identities = 62/163 (38%), Positives = 97/163 (59%), Gaps = 1/163 (0%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +K+ L+GD+GVGKS ++ RF + SF  +   TIG  F  +T++   +  K  IWDTAG E
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
           RFR +   YYRG+   ++VYD+T E +F+ ++NW+R + QH   ++   + GNK D+ + 
Sbjct: 65  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 124

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIK 178
           +  +     +  AD     F ETSAK  +N+ E+F  I+R I 
Sbjct: 125 REVME-RDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 166

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (323), Expect = 2e-38
 Identities = 54/164 (32%), Positives = 89/164 (54%), Gaps = 2/164 (1%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            KL+++G  GVGKS L ++F  G F   +  TI  D   + +E+D ++  L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKILVGNKADMDE 134
           +F  +   Y +   G  LVY +T +S+FN++++    I     +++V  ILVGNK D+++
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIK 178
            +                  F E+SAK+ +NV E+F+ + R I 
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  128 bits (322), Expect = 2e-38
 Identities = 72/165 (43%), Positives = 109/165 (66%), Gaps = 6/165 (3%)

Query: 15  LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           + K+++IGDS VGK+CL  RF  G F      TIG+DF+ R +++DG+RIK+Q+WDTAGQ
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61

Query: 75  ERF-RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADM 132
           ERF +++   YYR    ++ VYD+T+ +SF+++  WI   +QH  ++++ +ILVGNK D+
Sbjct: 62  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 121

Query: 133 DESKRAVPTSKGQALADEYGIKFFETSAKT---NLNVEEVFFSIA 174
                 VPT   Q  AD + +  FETSAK    N +VE +F ++A
Sbjct: 122 RS-AIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 165

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  129 bits (323), Expect = 2e-38
 Identities = 64/184 (34%), Positives = 110/184 (59%), Gaps = 6/184 (3%)

Query: 15  LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           L+K++++GDSGVGK+ L+ ++ +  F+  +  TIG DF  + + +D + + +QIWDTAGQ
Sbjct: 2   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 61

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKILVGNKA 130
           ERF+++  A+YRGA   +LV+DVT  ++F  + +W       AS    +N   +++GNK 
Sbjct: 62  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 121

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAE- 189
           D++  +             +  I +FETSAK  +NVE+ F +IAR+  ++  + +   E 
Sbjct: 122 DLENRQV-ATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEF 180

Query: 190 PQTI 193
           P+ I
Sbjct: 181 PEPI 184

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (318), Expect = 1e-37
 Identities = 55/176 (31%), Positives = 83/176 (47%), Gaps = 13/176 (7%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            KL+++GD   GK+CLL+  S   F   ++ T+  +  +  IE+DGK+++L +WDTAG E
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLE 61

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
            +  +    Y     IL+ + +    S  NI        +H   NV  ILVGNK D+   
Sbjct: 62  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 121

Query: 136 KRA-----------VPTSKGQALADEYG-IKFFETSAKTNLNVEEVFFSIARDIKQ 179
           +             V   +G+ +A+  G   + E SAKT   V EVF    R   Q
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 177

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (316), Expect = 2e-37
 Identities = 61/165 (36%), Positives = 89/165 (53%), Gaps = 3/165 (1%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           +L+++G  GVGKS L ++F    F T +  TI  D   +   +D +  +L I DTAGQE 
Sbjct: 7   RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEE 65

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIR-NIEQHASDNVNKILVGNKADMDES 135
           F  +   Y R   G LLV+ VTD  SF  I  + R  +     D    IL+GNKAD+D  
Sbjct: 66  FGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH- 124

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           +R V   +GQ LA +  + + E SAK  +NV++ F  + R I++ 
Sbjct: 125 QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKF 169

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  124 bits (311), Expect = 8e-37
 Identities = 62/164 (37%), Positives = 95/164 (57%), Gaps = 2/164 (1%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IK++++G+  VGKS ++ R+  G FT  +  TIG+DF  R I+++ + ++L +WDTAGQE
Sbjct: 3   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 62

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
            F  IT AYYRGA   +LV+  TD  SF  I +W   +      ++   LV NK D+ + 
Sbjct: 63  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDD 121

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 179
              +   + + LA    ++F+ TS K +LNV EVF  +A    Q
Sbjct: 122 SC-IKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 164

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  123 bits (309), Expect = 2e-36
 Identities = 55/165 (33%), Positives = 88/165 (53%), Gaps = 2/165 (1%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD GVGKS L ++F    F   +  TI  D  ++  E+D +   L + DTAGQE 
Sbjct: 6   KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTI-EDSYLKHTEIDNQWAILDVLDTAGQEE 64

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK 136
           F  +   Y R   G L+VY VTD++SF ++  + + I +        +++          
Sbjct: 65  FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL 124

Query: 137 RAVPTSKGQALADEYGIKFFETSAKT-NLNVEEVFFSIARDIKQR 180
           R V   +G+ +A +Y I + ETSAK   LNV++ F  + R I+Q+
Sbjct: 125 RKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 169

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  123 bits (308), Expect = 5e-36
 Identities = 40/178 (22%), Positives = 82/178 (46%), Gaps = 14/178 (7%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            K++++GDS  GK+ LL  F+   F  +++ T+  +    + E+D +RI+L +WDT+G  
Sbjct: 3   CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSP 61

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135
            +  +    Y  +  +L+ +D++   + +++    +   Q    N   +LVG K+D+   
Sbjct: 62  YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTD 121

Query: 136 -----------KRAVPTSKGQALADEYGI-KFFETSAKTNLN-VEEVFFSIARDIKQR 180
                      +  V   +G  +A + G   + E SA  + N V ++F         +
Sbjct: 122 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 179

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score =  121 bits (305), Expect = 1e-35
 Identities = 34/166 (20%), Positives = 65/166 (39%), Gaps = 8/166 (4%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G    GK+ +L +   G   T+ I T+G + +  T     K +K  +WD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNVETVTY----KNVKFNVWDVGGQD 67

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKAD--M 132
           + R +   YY G  G++ V D  D    +  R  +  I       +   ++  NK D   
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 127

Query: 133 DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIK 178
                 +    G     +       + A +   + E    +  + K
Sbjct: 128 AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 173

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score =  121 bits (304), Expect = 1e-35
 Identities = 27/165 (16%), Positives = 55/165 (33%), Gaps = 8/165 (4%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G    GK+ +L +   G   T                ++ K I   +WD  GQ+
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVT-----TIPTIGFNVETVEYKNISFTVWDVGGQD 55

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE- 134
           + R +   Y++   G++ V D  D    N  R  +  +          +LV         
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115

Query: 135 --SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
             +   +    G             T A +   + E    ++  +
Sbjct: 116 AMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (303), Expect = 2e-35
 Identities = 54/167 (32%), Positives = 81/167 (48%), Gaps = 4/167 (2%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            ++ + G  GVGKS L+LRF  G+F  S+I T+   ++      D     LQI DT G  
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISC-DKSICTLQITDTTGSH 61

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK--ILVGNKADMD 133
           +F  +           +LVY +T   S   ++     I +   D  +   +LVGNK   +
Sbjct: 62  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNK-CDE 120

Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
              R V +S+ +ALA  +   F ETSAK N NV+E+F  +    K+R
Sbjct: 121 SPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRR 167

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (301), Expect = 3e-35
 Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 5/167 (2%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +KL + G +GVGKS L++RF    F   +  T+   ++ +    D + + ++I DT   +
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATI-DDEVVSMEILDT-AGQ 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIR-NIEQHASDNVNKILVGNKADMDE 134
                   + R   G +LVYD+TD  SF  +        E     NV  ILVGNKAD+D 
Sbjct: 61  EDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 120

Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTN-LNVEEVFFSIARDIKQR 180
             R V T +G+ LA E    F+E SA T   N+ E+F+ + R++++R
Sbjct: 121 -SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR 166

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score =  120 bits (301), Expect = 5e-35
 Identities = 38/168 (22%), Positives = 64/168 (38%), Gaps = 8/168 (4%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G  G GK+ +L R   G   T+  T IG + +     L  K +KL +WD  GQ 
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVVTTKPT-IGFNVET----LSYKNLKLNVWDLGGQT 72

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDE 134
             R     YY     ++ V D TD+   +     +  + Q     +   ++  NK D   
Sbjct: 73  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 132

Query: 135 --SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
             S   V          +       +SA     + E    +   IK+ 
Sbjct: 133 ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 180

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score =  110 bits (276), Expect = 2e-31
 Identities = 29/166 (17%), Positives = 58/166 (34%), Gaps = 8/166 (4%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            K++++G    GK+ +L +FS      +  T      +I          +  +WD  GQE
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVIN-----NTRFLMWDIGGQE 70

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADM-- 132
             R+    YY     +++V D TD    +  R  +  +  H        ++  NK D+  
Sbjct: 71  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 130

Query: 133 DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIK 178
             +   +          ++        A T   + +    +   +K
Sbjct: 131 CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 176

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (271), Expect = 9e-31
 Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 3/164 (1%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            K+ ++G   VGKS L ++F +G F  S+  TI  +   + I ++G+   LQ+ DTAGQ+
Sbjct: 5   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTI-ENTFTKLITVNGQEYHLQLVDTAGQD 63

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDNVNKILVGNKADMDE 134
            +      Y     G +LVY VT   SF  I+    + ++      +  +LVGNK D+  
Sbjct: 64  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 123

Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIK 178
            +  +   +G+ALA+ +   F E+SAK N    +VF  I  + +
Sbjct: 124 ERV-ISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAE 166

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score =  107 bits (268), Expect = 3e-30
 Identities = 31/174 (17%), Positives = 65/174 (37%), Gaps = 8/174 (4%)

Query: 7   RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKL 66
           + ++  D  +++LL+G    GK+ LL + +    +     T G + K        +  KL
Sbjct: 8   KLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNIKSVQS----QGFKL 62

Query: 67  QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKIL 125
            +WD  GQ + R    +Y+     ++ V D  D   F      +  + +      V  ++
Sbjct: 63  NVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLI 122

Query: 126 VGNKADM--DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177
             NK D+        +          +   +    SA T   V++    + +++
Sbjct: 123 FANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (268), Expect = 3e-30
 Identities = 50/163 (30%), Positives = 88/163 (53%), Gaps = 4/163 (2%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+L+GD G GK+  + R   G F   ++ T+G++        +   IK  +WDTAGQE+
Sbjct: 5   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK 136
           F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  +L GNK D+   K
Sbjct: 65  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDI---K 120

Query: 137 RAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 179
                +K      +  +++++ SAK+N N E+ F  +AR +  
Sbjct: 121 DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 163

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (264), Expect = 1e-29
 Identities = 52/165 (31%), Positives = 78/165 (47%), Gaps = 4/165 (2%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K+LL+G  GVGKS L   F                   R+I +DG+   L ++D   Q+ 
Sbjct: 3   KVLLLGAPGVGKSALARIFGGVEDGPE--AEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 60

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNW-IRNIEQHASDNVNKILVGNKADMDES 135
            R +           ++VY VTD+ SF       ++      +D+V  ILVGNK+D+   
Sbjct: 61  GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR- 119

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
            R V   +G+A A  +  KF ETSA  + NV+ +F  + R I+ R
Sbjct: 120 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 164

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (264), Expect = 1e-29
 Identities = 35/167 (20%), Positives = 71/167 (42%), Gaps = 6/167 (3%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           ++L ++GD+  GKS L+ RF  GS+          +   + + +DG+   + I + AG  
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSYQVL--EKTESEQYKKEMLVDGQTHLVLIREEAGAP 63

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADM-DE 134
             +          + +  + D     + + +   + ++       +   LVG +  +   
Sbjct: 64  DAKFSGW--ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISAS 121

Query: 135 SKRAVPTSKGQALA-DEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           S R V  ++ +AL  D     ++ET A   LNV+ VF  +A+ +   
Sbjct: 122 SPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTL 168

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (262), Expect = 2e-29
 Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 4/171 (2%)

Query: 13  DYLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDT 71
           +   +++LIG+ GVGKS L   F+    +  S    +G D   RT+ +DG+   + + D 
Sbjct: 1   NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 60

Query: 72  A-GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNK 129
              +     +     +     L+VY +TD +SF       I+      ++++  ILVGNK
Sbjct: 61  WENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 120

Query: 130 ADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           +D+   +  V  S+G+A A  +  KF ETSA    NV+E+F  I R ++ R
Sbjct: 121 SDLVRCRE-VSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 170

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score =  104 bits (260), Expect = 4e-29
 Identities = 34/168 (20%), Positives = 65/168 (38%), Gaps = 8/168 (4%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           ++LL++G    GK+ +L +F+          TI          L+ +  KL IWD  GQ+
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDV-----DTISPTLGFNIKTLEHRGFKLNIWDVGGQK 57

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDE 134
             R+    Y+    G++ V D  D     + +  ++++           ++  NK D+  
Sbjct: 58  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 117

Query: 135 --SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
             S  A+  +        +  +    SA T  ++      +  DI  R
Sbjct: 118 ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 165

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  102 bits (254), Expect = 4e-28
 Identities = 31/169 (18%), Positives = 62/169 (36%), Gaps = 15/169 (8%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KLL +G    GK+ LL    +         T+   +   + EL    IK   +D  G  +
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVG--------- 127
            R +   Y+    GI+ + D  D   F+  R  +  +   A       ++          
Sbjct: 57  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 116

Query: 128 -NKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR 175
            ++A++  +   + T+  Q +  +  ++ F  S        E F  +++
Sbjct: 117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score =  101 bits (251), Expect = 9e-28
 Identities = 33/166 (19%), Positives = 69/166 (41%), Gaps = 7/166 (4%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           ++L L+G    GK+  +   + G F    I T          ++    + +++WD  GQ 
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPT----VGFNMRKITKGNVTIKLWDIGGQP 58

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDE 134
           RFR++   Y RG   I+ + D  D+      +N + N+        +  +++GNK D+  
Sbjct: 59  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 118

Query: 135 S--KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIK 178
           +  ++ +      +   +  I  +  S K   N++     + +  K
Sbjct: 119 ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 164

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score =  100 bits (250), Expect = 1e-27
 Identities = 34/168 (20%), Positives = 64/168 (38%), Gaps = 8/168 (4%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G  G GK+ +L R   G   T                +  K +K Q+WD  G  
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEVVT-----TIPTIGFNVETVTYKNLKFQVWDLGGLT 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKI-LVGNKADMDE 134
             R     YY     ++ V D  D       ++ +  + +        + +  NK DM++
Sbjct: 61  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 120

Query: 135 --SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
             +   +  S G     +   + F+TSA     ++E    +   +K R
Sbjct: 121 AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 168

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 97.3 bits (241), Expect = 7e-26
 Identities = 32/202 (15%), Positives = 59/202 (29%), Gaps = 44/202 (21%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +KLLL+G    GKS  + +      +   + T GI         D + +  ++ D  GQ 
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHGSG--VPTTGIIEY----PFDLQSVIFRMVDVGGQR 56

Query: 76  RFRTITTAYYRGAMGILLVYDVTD-----------ESSFNNIRNWIRNIEQHASDNVNKI 124
             R      +     I+ +  +++                +   +   I      N + I
Sbjct: 57  SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI 116

Query: 125 LVGNKADMDESKRAVPTSKGQALADEYG--------------------------IKFFET 158
           L  NK      ++ + +       +  G                          I    T
Sbjct: 117 LFLNK-KDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFT 175

Query: 159 SAKTNLNVEEVFFSIARDIKQR 180
            A    N+  VF ++   I Q 
Sbjct: 176 CATDTENIRFVFAAVKDTILQL 197

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 96.4 bits (239), Expect = 3e-25
 Identities = 29/195 (14%), Positives = 56/195 (28%), Gaps = 19/195 (9%)

Query: 12  YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
           Y    +LLL+G    GKS ++ +          + T GI       +    ++   ++D 
Sbjct: 3   YRATHRLLLLGAGESGKSTIVKQMRIL----HVVLTSGIFET----KFQVDKVNFHMFDV 54

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQH-----------ASDN 120
            GQ   R      +     I+ V   +  +      N    +++                
Sbjct: 55  GGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRT 114

Query: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           ++ IL  NK D+   K     SK +    E+        A      +         I+  
Sbjct: 115 ISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDE 174

Query: 181 LADTDSRAEPQTIKI 195
                + +       
Sbjct: 175 FLRISTASGDGRHYC 189

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 88.5 bits (218), Expect = 2e-22
 Identities = 31/202 (15%), Positives = 55/202 (27%), Gaps = 47/202 (23%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +KLLL+G    GKS ++ +        + I      FK             +++D  GQ 
Sbjct: 3   VKLLLLGAGESGKSTIVKQMKIIHEAGTGIVETHFTFKDLHF---------KMFDVGGQR 53

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-----------WIRNIEQHASDNVNKI 124
             R      + G   I+    ++D                    +          + + I
Sbjct: 54  SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 113

Query: 125 LVGNKADMDESKRAVPTSKGQALADEYG--------------------------IKFFET 158
           L  NK      ++   +       +  G                          I    T
Sbjct: 114 LFLNK-KDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFT 172

Query: 159 SAKTNLNVEEVFFSIARDIKQR 180
            A    NV+ VF ++   I + 
Sbjct: 173 CATDTKNVQFVFDAVTDVIIKN 194

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 87.6 bits (216), Expect = 3e-22
 Identities = 35/204 (17%), Positives = 58/204 (28%), Gaps = 46/204 (22%)

Query: 15  LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           L+K+LL+G    GKS  L +            T GI       + + K +  ++ D  GQ
Sbjct: 2   LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEY----DFEIKNVPFKMVDVGGQ 54

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRN-----------IEQHASDNVNK 123
              R      +     IL +   ++                        +      NV+ 
Sbjct: 55  RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 114

Query: 124 ILVGNKADMDESKRAVPTSKGQALADEYG---------------------------IKFF 156
           IL  NK D+ E ++    S      +  G                           +   
Sbjct: 115 ILFLNKTDLLE-EKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHH 173

Query: 157 ETSAKTNLNVEEVFFSIARDIKQR 180
            T+A    N+  VF  +   I   
Sbjct: 174 FTTAINTENIRLVFRDVKDTILHD 197

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 85.1 bits (209), Expect = 2e-21
 Identities = 33/181 (18%), Positives = 53/181 (29%), Gaps = 20/181 (11%)

Query: 12  YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
           Y    KL+ +G    GK+ LL    D            +      + + G          
Sbjct: 10  YKKTGKLVFLGLDNAGKTTLLHMLKDDRL---GQHVPTLHPTSEELTIAGMTFTTFDLGG 66

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDNVNKILVGNKA 130
               + R +   Y     GI+ + D  D       +  +   +      NV  +++GNK 
Sbjct: 67  --HIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKI 124

Query: 131 DMDE-----------SKRAVPTSKGQALADEYG---IKFFETSAKTNLNVEEVFFSIARD 176
           D  E                 T KG     E     ++ F  S        E F  +A+ 
Sbjct: 125 DRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 184

Query: 177 I 177
           I
Sbjct: 185 I 185

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.7 bits (177), Expect = 2e-16
 Identities = 19/124 (15%), Positives = 44/124 (35%), Gaps = 5/124 (4%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
            +L +G    GK+ L +R   G +  +  T+I     I  +  +       I     +  
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60

Query: 77  FRTITTAYYRGAMGILLVYDVTD-ESSFNNIRNWIRNIEQHASDNVNK---ILVGNKADM 132
              +   +   A  ++ V D    +    ++  ++  +   +    N    ++  NK D+
Sbjct: 61  RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120

Query: 133 DESK 136
             +K
Sbjct: 121 AMAK 124

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.9 bits (141), Expect = 2e-11
 Identities = 31/207 (14%), Positives = 59/207 (28%), Gaps = 28/207 (13%)

Query: 14  YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73
           Y   +++ G    GK+ LL   +  S       T+     +   + DG  +   + D  G
Sbjct: 2   YQPSIIIAGPQNSGKTSLLTLLTTDSVR----PTVVSQEPLSAADYDGSGV--TLVDFPG 55

Query: 74  QERFRTITTAYY-----RGAMGILLVYDVTDESSFNNIRNWIRNI----EQHASDNVNKI 124
             + R   + Y           I +V    D         ++ +I    E    + ++ +
Sbjct: 56  HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 115

Query: 125 LVGNKADMDESKRAVPTSKGQALADE---------YGIKFFETSAKTNLNVEEVFFSI-- 173
           +  NK   +      P+    AL  E           +   E         E     +  
Sbjct: 116 IACNK--SELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQS 173

Query: 174 ARDIKQRLADTDSRAEPQTIKINQPDQ 200
               K    +    A   +I   +  Q
Sbjct: 174 TDGFKFANLEASVVAFEGSINKRKISQ 200

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 54.4 bits (129), Expect = 4e-10
 Identities = 31/173 (17%), Positives = 59/173 (34%), Gaps = 20/173 (11%)

Query: 16  IKLLLIGDSGVGKSCLLLRFS-DGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT--- 71
           +K+++ G    GKS LL   +   +   + I     D     I +DG  + +        
Sbjct: 2   MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 61

Query: 72  ---AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGN 128
                +             A  +L + D T   + +    W   I +     +   +V N
Sbjct: 62  ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARL-PAKLPITVVRN 120

Query: 129 KADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 181
           KAD+        T +   +++  G      SA+T   V+ +       +KQ +
Sbjct: 121 KADI--------TGETLGMSEVNGHALIRLSARTGEGVDVLR----NHLKQSM 161

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 48.5 bits (114), Expect = 8e-08
 Identities = 24/177 (13%), Positives = 55/177 (31%), Gaps = 8/177 (4%)

Query: 20  LIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ----E 75
           L+G    GKS LL   +      +      +   +  +E+  +  +  + D  G      
Sbjct: 6   LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEE-RFTLADIPGIIEGAS 64

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE--QHASDNVNKILVGNKADMD 133
             + +   + R      ++  V D +            E   +    + +  +     +D
Sbjct: 65  EGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVD 124

Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEP 190
             +     +   ALA E G+     SA T   +  +  ++   ++        +  P
Sbjct: 125 LLEEEAVKALADALARE-GLAVLPVSALTGAGLPALKEALHALVRSTPPPEMPKPVP 180

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 45.9 bits (107), Expect = 5e-07
 Identities = 21/171 (12%), Positives = 48/171 (28%), Gaps = 9/171 (5%)

Query: 13  DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTA 72
           D  I++   G S  GKS  L   ++         T G    I   E+   +  + +    
Sbjct: 14  DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYG 73

Query: 73  GQ-------ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW--IRNIEQHASDNVNK 123
                     +++     Y      +  +  + D        +   I          +  
Sbjct: 74  YAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVL 133

Query: 124 ILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA 174
           +   +K      K  +   +   LA    ++    S+     V+++   + 
Sbjct: 134 LTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLD 184

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 45.4 bits (106), Expect = 6e-07
 Identities = 35/169 (20%), Positives = 61/169 (36%), Gaps = 20/169 (11%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG-- 73
           ++++++G   VGKS LL R              G    + + E+  + I  +I DTAG  
Sbjct: 1   LRMVIVGKPNVGKSTLLNRLL-NEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVR 59

Query: 74  -------QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILV 126
                  +      T      A  +L V D +      + +   R   +     +NK+ V
Sbjct: 60  SETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDV 119

Query: 127 GNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR 175
             K + +E K  + T               + SA     +E++  SI R
Sbjct: 120 VEKINEEEIKNKLGT----------DRHMVKISALKGEGLEKLEESIYR 158

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 44.4 bits (103), Expect = 2e-06
 Identities = 26/173 (15%), Positives = 53/173 (30%), Gaps = 8/173 (4%)

Query: 15  LIKLLLIGDSGVGKSCLLLRFSDGSFT--TSFITTIGIDFKIRTIELDGKRIKLQIWDTA 72
           L ++ L G S VGKS  +    +      TS             I  +   + +  +  A
Sbjct: 23  LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFA 82

Query: 73  GQERFRTITTAYYRGAMGI----LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGN 128
              +                   L       +       + ++  E      +  I++  
Sbjct: 83  KVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIAT 142

Query: 129 KADMDESKRAVPTSKG--QALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 179
           KAD     +    +K   Q L  +   +    S++T    +E + +I + I +
Sbjct: 143 KADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMINR 195

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 44.3 bits (103), Expect = 2e-06
 Identities = 28/180 (15%), Positives = 45/180 (25%), Gaps = 19/180 (10%)

Query: 20  LIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT 79
             G S VGKS L+ R +           +         +              G  +   
Sbjct: 5   FAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEVQ 64

Query: 80  ITTAYYRGAM---------GILLVYDVTDESSFNNIRNWIRNIEQH-------ASDNVNK 123
                                +LV D                I             ++  
Sbjct: 65  ERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPT 124

Query: 124 ILVGNKADMDESKRAVPTSKGQALA---DEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
           I+  NK D  ++ + V     +       E    F   SAK   N+E +   I   I++R
Sbjct: 125 IVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER 184

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 19/163 (11%), Positives = 40/163 (24%), Gaps = 10/163 (6%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTI--ELDGKRIKLQIWDTAG 73
           + + + G++G GKS  +                G+                 +  WD  G
Sbjct: 57  LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPG 116

Query: 74  QERFRTITTAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKAD 131
                     Y              ++      N  +  + I            V  K D
Sbjct: 117 IGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMM---KKEFYFVRTKVD 173

Query: 132 MDESKRAVPTSKG---QALADEYGIKFFETSAKTNLNVEEVFF 171
            D +  A    +    + +  +  +    T  +  +    +F 
Sbjct: 174 SDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFL 216

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 42.1 bits (97), Expect = 1e-05
 Identities = 26/174 (14%), Positives = 59/174 (33%), Gaps = 15/174 (8%)

Query: 20  LIGDSGVGKSCLLLRF--------SDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
           ++G   VGKS L  +          D    T       +++  +T +L            
Sbjct: 5   IVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQD 64

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKAD 131
              ++ + +T    R A  +L V D     +  +        +      +      NKA+
Sbjct: 65  IISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVA----NKAE 120

Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTD 185
                      +  +L      +    SA+ N+N++ +  +I + ++++  D +
Sbjct: 121 NLREFEREVKPELYSLGFG---EPIPVSAEHNINLDTMLETIIKKLEEKGLDLE 171

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 42.0 bits (97), Expect = 1e-05
 Identities = 27/165 (16%), Positives = 56/165 (33%), Gaps = 7/165 (4%)

Query: 20  LIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT-----AGQ 74
           ++G   VGKS LL +      + +         +I  I  +G    + +          +
Sbjct: 10  IVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKR 69

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134
              R +  A       + LV  V + + +      + N  +     V   +  NK D  +
Sbjct: 70  AINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAV--NKVDNVQ 127

Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 179
            K  +        +    +     SA+T LNV+ +   + + + +
Sbjct: 128 EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPE 172

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 41.6 bits (96), Expect = 2e-05
 Identities = 27/176 (15%), Positives = 50/176 (28%), Gaps = 13/176 (7%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IK+ ++G   VGKS L                 G        E+     K    DTAG  
Sbjct: 9   IKVAIVGRPNVGKSTLFNAIL-NKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLR 67

Query: 76  RFRTITTA--------YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVG 127
           R   +               ++    V  +  +++    R   R            ++V 
Sbjct: 68  RKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVF 127

Query: 128 NKADMDESKRAVPTSKGQALADEY----GIKFFETSAKTNLNVEEVFFSIARDIKQ 179
           NK D+   +        +   ++           TSA    N++ +  ++      
Sbjct: 128 NKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS 183

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 40.9 bits (94), Expect = 3e-05
 Identities = 16/157 (10%), Positives = 38/157 (24%), Gaps = 2/157 (1%)

Query: 20  LIGDSGVGKSCLLLRF--SDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 77
           ++G   VGKS LL        +  +    T     +    E   + + +           
Sbjct: 10  IVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDA 69

Query: 78  RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 137
                          +   V      +        + +     V K+ +    +  ++ +
Sbjct: 70  LGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAK 129

Query: 138 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA 174
               +           +    SA     V E+   + 
Sbjct: 130 YPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLL 166

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 39.1 bits (90), Expect = 1e-04
 Identities = 33/172 (19%), Positives = 53/172 (30%), Gaps = 16/172 (9%)

Query: 20  LIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--- 76
           L+G   VGKS LL   S      +      +   +  +E D  R    + D  G      
Sbjct: 6   LVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGR-SFVMADLPGLIEGAH 64

Query: 77  ---------FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVG 127
                     R I        +  +   +  D        N   +          +I+V 
Sbjct: 65  QGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVA 124

Query: 128 NKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 179
           NK DM E+   +   K +          F  SA T   + E+ F +A  ++ 
Sbjct: 125 NKMDMPEAAENLEAFKEKL---TDDYPVFPISAVTREGLRELLFEVANQLEN 173

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 205

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 38.4 bits (88), Expect = 3e-04
 Identities = 20/139 (14%), Positives = 39/139 (28%), Gaps = 8/139 (5%)

Query: 45  ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN 104
             T        + +      ++   D  G E       +      G +LV    +     
Sbjct: 67  YVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQP 126

Query: 105 NIRNWIRNIEQHASDNVNKILV-GNKADM--DESKRAVPTSKGQALADEYG--IKFFETS 159
             R     +       V  +++  NK D+   E   +      Q     +   +     S
Sbjct: 127 QTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVS 183

Query: 160 AKTNLNVEEVFFSIARDIK 178
           A   +N++ +   I   IK
Sbjct: 184 ALHKINIDSLIEGIEEYIK 202

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 37.9 bits (87), Expect = 5e-04
 Identities = 17/130 (13%), Positives = 33/130 (25%), Gaps = 12/130 (9%)

Query: 16  IKLLLIGDSGVGKSCLLLRF--------SDGSFTTSFITTIGIDFKIRTIELDGKRIKLQ 67
           + +L++G  GVGKS  +           S           +       T+ +      L 
Sbjct: 33  LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNI-IDTPGLI 91

Query: 68  IWDTAGQERFRTITTAYY-RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK--I 124
                       I +    +    +L V  +      N  +   + I       +    I
Sbjct: 92  EGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAI 151

Query: 125 LVGNKADMDE 134
           +    A    
Sbjct: 152 VALTHAQFSP 161

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	216
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.98
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.97
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.97
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.97
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.95
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.93
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.92
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.92
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.91
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.91
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.91
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.9
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.9
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.9
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.89
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.89
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.89
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.89
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.88
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.88
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.86
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.85
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.85
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.84
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.84
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.83
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.81
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.8
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.8
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.75
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.74
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.73
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.73
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.7
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.66
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.66
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.64
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.63
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.56
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.56
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.47
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.45
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.38
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.37
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.24
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.23
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.11
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.04
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.89
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.56
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.5
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.35
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.34
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.3
d1okkd2	207	GTPase domain of the signal recognition particle r	98.3
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.29
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.29
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.23
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.2
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.17
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.17
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.1
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.65
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.54
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.54
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.54
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.45
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.42
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.37
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.36
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.34
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.34
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.33
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.31
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.29
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.29
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.26
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.24
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.22
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.19
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.15
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.14
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.14
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.12
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.11
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.09
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.09
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.07
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.07
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.06
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.05
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.05
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.04
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.04
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.03
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.02
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.02
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.01
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.0
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.99
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.97
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.96
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.96
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.95
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.94
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.93
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.93
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.93
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.91
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.89
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.88
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.88
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.88
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.87
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.85
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.8
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.79
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.78
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.78
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.76
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.73
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.72
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.7
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.66
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.61
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.61
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.53
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.5
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.43
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.42
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.4
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.36
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.36
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.35
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.32
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.29
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.25
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.25
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.15
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.14
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.06
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.02
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.0
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.96
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	95.96
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.95
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.91
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.87
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	95.86
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.86
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.73
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.7
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	95.68
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.67
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	95.65
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.64
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.39
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.3
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.22
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.19
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.16
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.13
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.11
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.05
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	94.99
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	94.88
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	94.88
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	94.8
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	94.77
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	94.76
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	94.73
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	94.72
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.68
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	94.65
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.62
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	94.5
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	94.45
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.41
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.4
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	94.38
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.35
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	94.25
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	94.17
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	94.16
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.15
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.11
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.03
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	93.99
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	93.92
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	93.85
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	93.83
d1tuea_	205	Replication protein E1 helicase domain {Human papi	93.71
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	93.41
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	93.37
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	93.32
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	93.23
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	93.19
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	92.89
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	92.66
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	92.4
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	91.91
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	91.88
d1xpua3	289	Transcription termination factor Rho, ATPase domai	91.47
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	91.39
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	91.09
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	90.36
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	90.01
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	89.95
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	89.81
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	89.44
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	88.89
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	88.37
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	88.34
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	87.3
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	86.77
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.82
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.52
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	85.11
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	84.92
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	83.49
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	83.09
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	81.83
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	81.51
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	81.43
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	81.42
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	81.19
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	80.9
d1zpda1	175	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	80.89
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	80.4

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.1e-36  Score=217.66  Aligned_cols=167  Identities=54%  Similarity=0.973  Sum_probs=153.5

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      .++.+||+|+|.+|||||||+++|.++.+...+.++.+.+.....+...+..+.+.+||+||++.+..++..+++++|++
T Consensus         2 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~   81 (169)
T d3raba_           2 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   81 (169)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEE
T ss_pred             CCeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            46789999999999999999999999998888888888888888999999999999999999999999999999999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q 027949           92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFF  171 (216)
Q Consensus        92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  171 (216)
                      |+|||+++++++..+..|+..+........|+++|+||+|+.+ ...+..++++.++..++++|++|||++|.|++++|+
T Consensus        82 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~-~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~  160 (169)
T d3raba_          82 ILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED-ERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE  160 (169)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeeccccc-ccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence            9999999999999999988888777767899999999999854 456777889999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027949          172 SIARDIKQ  179 (216)
Q Consensus       172 ~l~~~i~~  179 (216)
                      +|++.+++
T Consensus       161 ~l~~~i~e  168 (169)
T d3raba_         161 RLVDVICE  168 (169)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            99998865

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-36  Score=217.07  Aligned_cols=169  Identities=47%  Similarity=0.867  Sum_probs=155.7

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      .++.+||+|+|.+|||||||+++|..+.+...+.++.+.+.....+.+++..+.+.+|||+|++.+..++..++++++++
T Consensus         2 ~~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~   81 (171)
T d2ew1a1           2 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL   81 (171)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceE
Confidence            46789999999999999999999999999888888888889999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q 027949           92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFF  171 (216)
Q Consensus        92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  171 (216)
                      ++|+|++++.++..+..|+..+........|++||+||+|+.+ ...+..++++.++..+++++++|||++|+||+++|.
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~-~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~  160 (171)
T d2ew1a1          82 ILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE-RREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFL  160 (171)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             EEeeecccchhhhhhhhhhhhhcccccccccEEEEEeeccccc-ccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHH
Confidence            9999999999999999999988887777899999999999864 456778889999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 027949          172 SIARDIKQRL  181 (216)
Q Consensus       172 ~l~~~i~~~~  181 (216)
                      +|++.++.+.
T Consensus       161 ~l~~~l~~~~  170 (171)
T d2ew1a1         161 DLACRLISEA  170 (171)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9998887653

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-36  Score=215.73  Aligned_cols=165  Identities=38%  Similarity=0.793  Sum_probs=146.7

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      |.+||+|+|.+|||||||++++..+.+...+.++.+.+.....+..++..+.+.+||++|...+..++..+++++|++|+
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            67999999999999999999999999999999999988988899999999999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q 027949           94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI  173 (216)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  173 (216)
                      |||++++++|..+..|+..+........|++||+||+|+.+ .+.+..++++.++..++++|++|||++|.||+++|.+|
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~-~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l  160 (167)
T d1z08a1          82 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK-ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL  160 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             EEeCCchhHHHhhhhhhhhcccccccccceeeecccccccc-ccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHH
Confidence            99999999999999999888776666789999999999965 45678899999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027949          174 ARDIKQ  179 (216)
Q Consensus       174 ~~~i~~  179 (216)
                      ++.+++
T Consensus       161 ~~~i~~  166 (167)
T d1z08a1         161 CKRMIE  166 (167)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            998864

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-35  Score=217.72  Aligned_cols=173  Identities=58%  Similarity=1.021  Sum_probs=158.1

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      .++.+||+|+|.+|||||||+++|....+...+.++.+.......+.+++..+.+.+||++|++.+..++..+++++|++
T Consensus         3 ~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~   82 (194)
T d2bcgy1           3 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI   82 (194)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence            57889999999999999999999999998888889988888888899999999999999999999999999999999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q 027949           92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFF  171 (216)
Q Consensus        92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  171 (216)
                      |+|||.++++++..+..|+..+........|+++|+||.|+.+ ......++...++...++.|+++||++|.|++++|+
T Consensus        83 i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~  161 (194)
T d2bcgy1          83 IIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD-KRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL  161 (194)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEecccccc-ccchhHHHHhhhhhccCcceEEEecCcCccHHHHHH
Confidence            9999999999999999998888877777899999999999965 466778888999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccc
Q 027949          172 SIARDIKQRLADTD  185 (216)
Q Consensus       172 ~l~~~i~~~~~~~~  185 (216)
                      +|++.+.+......
T Consensus       162 ~l~~~i~~~~~~~~  175 (194)
T d2bcgy1         162 TMARQIKESMSQQN  175 (194)
T ss_dssp             HHHHHHHHHCCHHH
T ss_pred             HHHHHHHHHhhhcc
Confidence            99999987654433

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-35  Score=213.52  Aligned_cols=172  Identities=47%  Similarity=0.809  Sum_probs=157.9

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      .++.+||+|+|.+|||||||++++..+.+...+.++.+.......+..++..+.+.+||++|++.+..++..+++.++++
T Consensus         2 ~~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   81 (174)
T d2bmea1           2 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA   81 (174)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred             ccEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEE
Confidence            46789999999999999999999999999888888888888888888899999999999999999999999999999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q 027949           92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFF  171 (216)
Q Consensus        92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  171 (216)
                      |+|||.++++++..+..|+..+......+.|+++|+||+|+.. ........+..++..++++|+++||++|+|++++|.
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~  160 (174)
T d2bmea1          82 LLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA-DREVTFLEASRFAQENELMFLETSALTGENVEEAFV  160 (174)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccc-hhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHH
Confidence            9999999999999999999998888777899999999999854 556777888899999999999999999999999999


Q ss_pred             HHHHHHHHHhhcc
Q 027949          172 SIARDIKQRLADT  184 (216)
Q Consensus       172 ~l~~~i~~~~~~~  184 (216)
                      +|++.++++.+..
T Consensus       161 ~l~~~i~~~~~~~  173 (174)
T d2bmea1         161 QCARKILNKIESG  173 (174)
T ss_dssp             HHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999876543

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-35  Score=213.84  Aligned_cols=169  Identities=36%  Similarity=0.589  Sum_probs=150.2

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      +...+||+|+|.+|||||||+++++.+.+...+.++.. +.....+.+++..+.+.+||++|.+.+...+..+++++|++
T Consensus         3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~   81 (173)
T d2fn4a1           3 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF   81 (173)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred             CCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc-cceeeEeccCCeeeeeeccccccccccccccchhhccceee
Confidence            34569999999999999999999999998877777654 55567788899999999999999999999999999999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q 027949           92 LLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF  170 (216)
Q Consensus        92 i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  170 (216)
                      |+|||++++.++..+..|+..+.... ..+.|++||+||+|+.+ .+....+++..++..++++|++|||++|.||+++|
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f  160 (173)
T d2fn4a1          82 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES-QRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF  160 (173)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             eeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhh-ccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHH
Confidence            99999999999999999998876643 45789999999999864 45677788999999999999999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 027949          171 FSIARDIKQRLA  182 (216)
Q Consensus       171 ~~l~~~i~~~~~  182 (216)
                      ++|++.+.++++
T Consensus       161 ~~l~~~i~k~~~  172 (173)
T d2fn4a1         161 EQLVRAVRKYQE  172 (173)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhc
Confidence            999999877654

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1e-35  Score=213.94  Aligned_cols=163  Identities=38%  Similarity=0.707  Sum_probs=150.7

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+|+|.+|||||||+++|.++.+...+.++.+.+.....+..++..+.+.+||++|...+..++..+++.+|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            48999999999999999999999999888889988888888899999999999999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q 027949           95 YDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA  174 (216)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  174 (216)
                      ||+++++++..+..|+..+....+ +.|++||+||+|+.+ .+.+..++++.++..++++|+++||++|.||+++|++|+
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~iilVgnK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~  159 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLD-DSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA  159 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHC-SCCEEEEEECGGGGG-GCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHH
T ss_pred             EeccchhhhhhcccccccccccCC-CceEEEeeccCCccc-ceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHH
Confidence            999999999999999999887654 689999999999865 456788889999999999999999999999999999999


Q ss_pred             HHHHH
Q 027949          175 RDIKQ  179 (216)
Q Consensus       175 ~~i~~  179 (216)
                      +.+++
T Consensus       160 ~~~lq  164 (164)
T d1z2aa1         160 EKHLQ  164 (164)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            98763

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-35  Score=212.64  Aligned_cols=171  Identities=50%  Similarity=0.863  Sum_probs=153.8

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ++.+||+|+|.+|||||||++++.+..+...+.++.+.......+..++..+.+.+||++|.+.+...+..+++.+|++|
T Consensus         2 ~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i   81 (175)
T d2f9la1           2 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   81 (175)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEE
Confidence            57899999999999999999999999998888888888888889999999999999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS  172 (216)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  172 (216)
                      +|||.++++++..+..|+..+......+.|++||+||+|+.+ ......+....+....+.+|++|||++|+|++++|.+
T Consensus        82 ~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~  160 (175)
T d2f9la1          82 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH-LRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKN  160 (175)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccc-cccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHH
Confidence            999999999999999999999888877899999999999965 3456667778888889999999999999999999999


Q ss_pred             HHHHHHHHhhcc
Q 027949          173 IARDIKQRLADT  184 (216)
Q Consensus       173 l~~~i~~~~~~~  184 (216)
                      |++.+.+...+.
T Consensus       161 l~~~i~~~~~~~  172 (175)
T d2f9la1         161 ILTEIYRIVSQK  172 (175)
T ss_dssp             HHHHHHHHHHTS
T ss_pred             HHHHHHHHhhhc
Confidence            999998766543

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-35  Score=211.87  Aligned_cols=164  Identities=48%  Similarity=0.878  Sum_probs=152.5

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      ++.+||+|+|.+|||||||++++.+..+...+.++.+.+.....+..++..+.+.+||++|++.+..++..+++++|++|
T Consensus         2 ~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~i   81 (166)
T d1z0fa1           2 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   81 (166)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEE
Confidence            57899999999999999999999999999888888888898899999999999999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS  172 (216)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  172 (216)
                      +|||+++.+++..+..|+..+........|+++++||+|+.+ ......++++.++..++++|++|||++|.||+++|.+
T Consensus        82 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~  160 (166)
T d1z0fa1          82 MVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA-QRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLE  160 (166)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchh-hcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            999999999999999999988887777899999999999854 4566778899999999999999999999999999999


Q ss_pred             HHHHH
Q 027949          173 IARDI  177 (216)
Q Consensus       173 l~~~i  177 (216)
                      |++.+
T Consensus       161 i~~~i  165 (166)
T d1z0fa1         161 AAKKI  165 (166)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99876

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5e-35  Score=212.05  Aligned_cols=170  Identities=51%  Similarity=0.924  Sum_probs=151.8

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      +|.+||+|+|++|||||||++++.+.++...+.++.+...........+..+.+.+||++|++.+..++..+++.+|++|
T Consensus         1 ~y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (173)
T d2a5ja1           1 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   80 (173)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred             CeeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEE
Confidence            36799999999999999999999999988888888888888888888998899999999999999999999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS  172 (216)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  172 (216)
                      +|||++++.++..+..|+..+......+.|++||+||+|+.. .+....+++..++..++++|+++||++|.||+++|.+
T Consensus        81 lv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~-~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~  159 (173)
T d2a5ja1          81 LVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES-RRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFIN  159 (173)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHH
T ss_pred             EEEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhh-hhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            999999999999999999988887777899999999999854 4567788899999999999999999999999999999


Q ss_pred             HHHHHHHHhhc
Q 027949          173 IARDIKQRLAD  183 (216)
Q Consensus       173 l~~~i~~~~~~  183 (216)
                      |++.+.++..+
T Consensus       160 i~~~i~~~~~~  170 (173)
T d2a5ja1         160 TAKEIYRKIQQ  170 (173)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHc
Confidence            99999876543

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-35  Score=211.39  Aligned_cols=166  Identities=31%  Similarity=0.411  Sum_probs=133.4

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+|+|.+|||||||++++.+..+... .++. .+.....+..++..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus         1 ifKi~lvG~~~vGKTsLi~~~~~~~~~~~-~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv   78 (168)
T d2gjsa1           1 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAA-GHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   78 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHTC-----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEE
T ss_pred             CeEEEEECCCCcCHHHHHHHHhCCccCCc-CCee-eeeecceeeccccccceeeeecccccccceecccchhhhhhhcee
Confidence            47999999999999999999998776433 2333 344556778899999999999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q 027949           95 YDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI  173 (216)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  173 (216)
                      ||++++.++..+..|+..+..... ...|+++|+||+|+.+ .+.+...+++.++..++++|++|||++|.|++++|.+|
T Consensus        79 ~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l  157 (168)
T d2gjsa1          79 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR-SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV  157 (168)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHH
T ss_pred             ccccccccccccccccchhhcccccccceEEEeecccchhh-hcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHH
Confidence            999999999999999998876543 5689999999999965 45678889999999999999999999999999999999


Q ss_pred             HHHHHHHhhc
Q 027949          174 ARDIKQRLAD  183 (216)
Q Consensus       174 ~~~i~~~~~~  183 (216)
                      ++.+..+++.
T Consensus       158 ~~~i~~~~~~  167 (168)
T d2gjsa1         158 VRQIRLRRDS  167 (168)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhhC
Confidence            9998776543

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.6e-35  Score=212.82  Aligned_cols=170  Identities=72%  Similarity=1.225  Sum_probs=126.8

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      .++.+||+|+|.+|||||||+++|+++.+...+.++.+.+.....+..++..+.+.+||+||++.+..++..+++.+|++
T Consensus         3 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~   82 (173)
T d2fu5c1           3 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   82 (173)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred             ccEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEE
Confidence            46789999999999999999999999998888888988889999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q 027949           92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFF  171 (216)
Q Consensus        92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  171 (216)
                      |+|||++++.++..+..|+..+........|+++|+||.|+.. ......+++..++...+++|++|||++|+||+++|+
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~  161 (173)
T d2fu5c1          83 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFF  161 (173)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS-CCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHH
T ss_pred             EEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchh-hcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999999999988877777899999999999865 345566778888999999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 027949          172 SIARDIKQRLA  182 (216)
Q Consensus       172 ~l~~~i~~~~~  182 (216)
                      +|++.+..+.+
T Consensus       162 ~l~~~i~~k~~  172 (173)
T d2fu5c1         162 TLARDIKAKMD  172 (173)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcC
Confidence            99999987754

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-35  Score=209.46  Aligned_cols=161  Identities=40%  Similarity=0.748  Sum_probs=149.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+|+|.+|||||||++++.++.+...+.++.+.......+..++..+.+.+||++|++.+...+..++..+|++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            58999999999999999999999999888999888888888888888999999999999999999999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q 027949           96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAR  175 (216)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  175 (216)
                      |++++.++..+..|+..+......+.|++||+||+|+.+ ......+++..+++.++++|++|||++|+||+++|.+|++
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~  159 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD-KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAA  159 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhh-hhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHH
Confidence            999999999999999998887777899999999999964 4566778999999999999999999999999999999998


Q ss_pred             HH
Q 027949          176 DI  177 (216)
Q Consensus       176 ~i  177 (216)
                      .+
T Consensus       160 ~l  161 (164)
T d1yzqa1         160 AL  161 (164)
T ss_dssp             HS
T ss_pred             hh
Confidence            65

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.9e-34  Score=206.56  Aligned_cols=164  Identities=36%  Similarity=0.582  Sum_probs=146.6

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+++|.+|||||||++++.+..+...+.++.+. .....+..++..+.+.+||++|.+.+..++..+++.+|++++|
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv   82 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIED-SYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV   82 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCE-EEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceee-ccccccccccccccccccccccccccccchhhhhhhccEEEEe
Confidence            589999999999999999999999888777777664 3456678899999999999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCC-CHHHHHHH
Q 027949           95 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL-NVEEVFFS  172 (216)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~l~~~  172 (216)
                      ||++++++|..+..|+..+.+.. ..+.|+++|+||+|+.+ .+.++.+++..+++.++++|+++||+++. ||+++|.+
T Consensus        83 ~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~-~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~~  161 (169)
T d1x1ra1          83 YSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH-LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHD  161 (169)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCST-TCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHH
T ss_pred             cccccchhhhccchhhHHHHhhccccCccEEEEecccchhh-hceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHHH
Confidence            99999999999999999887654 45789999999999965 45678899999999999999999999875 99999999


Q ss_pred             HHHHHHHH
Q 027949          173 IARDIKQR  180 (216)
Q Consensus       173 l~~~i~~~  180 (216)
                      |++.+.++
T Consensus       162 l~~~i~~~  169 (169)
T d1x1ra1         162 LVRVIRQQ  169 (169)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhC
Confidence            99988763

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.1e-34  Score=206.68  Aligned_cols=163  Identities=39%  Similarity=0.741  Sum_probs=151.5

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..+||+|+|.+|||||||+++|..+.+...+.++.+..........++....+.+||++|++.+..++..+++.++++|+
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII   82 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEE
Confidence            35899999999999999999999999998899998888888888889988999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q 027949           94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI  173 (216)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  173 (216)
                      |||+++++++..+..|+..+........|+++|+||+|+.+ .+.+..++++.++...+++|++|||++|.||+++|.+|
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l  161 (167)
T d1z0ja1          83 VYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD-VREVMERDAKDYADSIHAIFVETSAKNAININELFIEI  161 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhcc-ccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH
Confidence            99999999999999999888888778899999999999964 45678889999999999999999999999999999999


Q ss_pred             HHHH
Q 027949          174 ARDI  177 (216)
Q Consensus       174 ~~~i  177 (216)
                      ++.+
T Consensus       162 ~~~i  165 (167)
T d1z0ja1         162 SRRI  165 (167)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            8875

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-34  Score=210.57  Aligned_cols=166  Identities=27%  Similarity=0.473  Sum_probs=143.2

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      ....+||+|+|.+|||||||+++|+.+.+...+.++.+ +.....+..++..+.+.+||++|++.+..++..+++++|++
T Consensus         6 ~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~-~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~   84 (185)
T d2atxa1           6 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF   84 (185)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC-CCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcee-eeeeEEEeeCCceEEeecccccccchhhhhhhhccccccee
Confidence            34679999999999999999999999998888888776 44556677788889999999999999999999999999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-----------CCCccChHHHHHHHHHhC-CeEEEEe
Q 027949           92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE-----------SKRAVPTSKGQALADEYG-IKFFETS  159 (216)
Q Consensus        92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-----------~~~~~~~~~~~~~~~~~~-~~~~~~S  159 (216)
                      ++|||++++++|..+..|+....+....+.|+++|+||+|+.+           ..+.+..+++..++..++ +.|++||
T Consensus        85 ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~S  164 (185)
T d2atxa1          85 LICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECS  164 (185)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECC
T ss_pred             eeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEec
Confidence            9999999999999877654444444455799999999999864           234677888999999998 7999999


Q ss_pred             cCCCCCHHHHHHHHHHHHH
Q 027949          160 AKTNLNVEEVFFSIARDIK  178 (216)
Q Consensus       160 a~~~~gi~~l~~~l~~~i~  178 (216)
                      |++|.||+++|+.+++.++
T Consensus       165 Ak~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         165 ALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             TTTCTTHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHc
Confidence            9999999999999998874

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=1.4e-34  Score=208.65  Aligned_cols=164  Identities=36%  Similarity=0.654  Sum_probs=144.3

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      +.+||+|+|.+|||||||+++++.+.+...+.++.+..+ ...+..++..+.+.+||++|.+.+..++..+++++|++|+
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccc-ccccccccccccccccccccccchhhhhhhcccccceeEE
Confidence            358999999999999999999999998888888877554 4567789999999999999999998889999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949           94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS  172 (216)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  172 (216)
                      |||+++++++..+..|+..+.... ..+.|+++|+||+|+.+ .+.+..++++.++..++++|++|||++|.|++++|.+
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~  160 (168)
T d1u8za_          82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED-KRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD  160 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccc-cccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHH
Confidence            999999999999999998887654 45789999999999864 4667889999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027949          173 IARDIKQ  179 (216)
Q Consensus       173 l~~~i~~  179 (216)
                      |++.+..
T Consensus       161 l~~~i~~  167 (168)
T d1u8za_         161 LMREIRA  167 (168)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHC
Confidence            9988753

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-34  Score=206.41  Aligned_cols=163  Identities=33%  Similarity=0.513  Sum_probs=146.5

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..+||+|+|.+|||||||+++|+++.+...+.++.+.++ ...+.+++..+.+.+||++|...+..+...+++.+|++|+
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   81 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence            348999999999999999999999998888888877654 4667889999999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949           94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS  172 (216)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  172 (216)
                      |||+++++++..+..|+..+.... ..+.|+++|+||+|+.. .+.+..++++.++.+++++|++|||++|.||+++|..
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~-~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  160 (167)
T d1xtqa1          82 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM-ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR  160 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred             hcccchhhhhhhhhhhhhhhhhcccccccceeeecccccccc-ccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence            999999999999999998887654 45789999999999864 4567888999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027949          173 IARDIK  178 (216)
Q Consensus       173 l~~~i~  178 (216)
                      |++.+.
T Consensus       161 li~~~~  166 (167)
T d1xtqa1         161 IILEAE  166 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            988765

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-34  Score=205.86  Aligned_cols=166  Identities=37%  Similarity=0.612  Sum_probs=143.9

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..+||+|+|.+|||||||++++..+.+...+.++.+ +.....+..++..+.+.+||++|...+......+++.+|++++
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLL   82 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEEE
Confidence            348999999999999999999999998888877766 5566777889999999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949           94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS  172 (216)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  172 (216)
                      |||.++++++..+..|+..+.... ....|++||+||+|+.+ .+.+..+++..+++.++++|++|||++|.||+++|.+
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~  161 (171)
T d2erya1          83 VFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH-QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHE  161 (171)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTT-SCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             eeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhh-hccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHH
Confidence            999999999999999988776543 35789999999999965 4567888999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 027949          173 IARDIKQRL  181 (216)
Q Consensus       173 l~~~i~~~~  181 (216)
                      |++.+.+++
T Consensus       162 l~~~i~k~~  170 (171)
T d2erya1         162 LVRVIRKFQ  170 (171)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhh
Confidence            999986553

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.5e-34  Score=206.23  Aligned_cols=164  Identities=34%  Similarity=0.546  Sum_probs=142.3

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      +.||+|+|.+|+|||||++++..+.+...+.++.+ +.....+..++..+.+.+||++|++.+..++..+++++|++|+|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            47999999999999999999999998888888766 45556677888899999999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhC-CeEEEEecCC
Q 027949           95 YDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES-----------KRAVPTSKGQALADEYG-IKFFETSAKT  162 (216)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  162 (216)
                      ||++++++|..+..|+..+......+.|++||+||+|+.+.           ...+..++++.++...+ .+|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            99999999999887555544444557999999999998642           23467788999999988 5999999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 027949          163 NLNVEEVFFSIARDIKQ  179 (216)
Q Consensus       163 ~~gi~~l~~~l~~~i~~  179 (216)
                      |.||+++|+.|++.+++
T Consensus       161 ~~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         161 KDGVREVFEMATRAALQ  177 (177)
T ss_dssp             CTTHHHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHHHhC
Confidence            99999999999998763

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-34  Score=211.25  Aligned_cols=171  Identities=49%  Similarity=0.894  Sum_probs=149.7

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECC----------eEEEEEEEeCCCcccccccc
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG----------KRIKLQIWDTAGQERFRTIT   81 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~i~D~~G~~~~~~~~   81 (216)
                      .++.+||+|+|.+|||||||+++|+++.+...+.++.+.++....+..++          ..+.+.+||++|++.+..++
T Consensus         2 ~d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~   81 (186)
T d2f7sa1           2 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT   81 (186)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHH
Confidence            46789999999999999999999999998888888877777666665533          34789999999999999999


Q ss_pred             ccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEec
Q 027949           82 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSA  160 (216)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (216)
                      ..+++++|++|+|||++++.++..+..|+..+.... ....|++||+||+|+.+ .+.+..+++..++..++++|++|||
T Consensus        82 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~-~~~v~~~e~~~~~~~~~~~~~e~Sa  160 (186)
T d2f7sa1          82 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD-QREVNERQARELADKYGIPYFETSA  160 (186)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCCEEEEBT
T ss_pred             HHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchh-hhcchHHHHHHHHHHcCCEEEEEeC
Confidence            999999999999999999999999999987765543 34678999999999965 5678888999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhc
Q 027949          161 KTNLNVEEVFFSIARDIKQRLAD  183 (216)
Q Consensus       161 ~~~~gi~~l~~~l~~~i~~~~~~  183 (216)
                      ++|+||+++|++|++.+.++.++
T Consensus       161 k~~~~i~e~f~~l~~~i~~k~~~  183 (186)
T d2f7sa1         161 ATGQNVEKAVETLLDLIMKRMEQ  183 (186)
T ss_dssp             TTTBTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999877543

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.5e-34  Score=208.39  Aligned_cols=163  Identities=26%  Similarity=0.459  Sum_probs=141.5

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+|+|.+|||||||++++..+.+...+.++.+ .........++..+.+.+||++|++.+..++..+++++|++++|
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   81 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   81 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence            59999999999999999999999999888888877 44456667788889999999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhC-CeEEEEecCC
Q 027949           95 YDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES-----------KRAVPTSKGQALADEYG-IKFFETSAKT  162 (216)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  162 (216)
                      ||++++++|+.+..|+.........+.|+++|+||+|+.+.           ...+..++++.++..++ ++|++|||++
T Consensus        82 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  161 (191)
T d2ngra_          82 FSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALT  161 (191)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTTT
T ss_pred             cccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCCC
Confidence            99999999999987555554445567999999999998532           34577889999999875 7999999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 027949          163 NLNVEEVFFSIARDIK  178 (216)
Q Consensus       163 ~~gi~~l~~~l~~~i~  178 (216)
                      |.||+++|+.|+..++
T Consensus       162 ~~~V~e~f~~l~~~~~  177 (191)
T d2ngra_         162 QKGLKNVFDEAILAAL  177 (191)
T ss_dssp             CTTHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999987664

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-33  Score=202.80  Aligned_cols=166  Identities=53%  Similarity=0.980  Sum_probs=141.8

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      .++.+||+|+|.+|||||||+++++.+.+. ....++.+.+.....+..++..+.+.+|||+|++.+..++..+++++|+
T Consensus         3 ~d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~   82 (170)
T d2g6ba1           3 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   82 (170)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             CceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCce
Confidence            467899999999999999999999998865 4445556777888888999999999999999999999999999999999


Q ss_pred             EEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q 027949           91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF  170 (216)
Q Consensus        91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  170 (216)
                      +++|||+++++++..+..|+..+........|+++|+||.|+.+ ...+..+++..++..++++|+++||++|.||+++|
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~-~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f  161 (170)
T d2g6ba1          83 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH-ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF  161 (170)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS-CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             eEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhh-cccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHH
Confidence            99999999999999999998888777777899999999999864 45677889999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027949          171 FSIARDIK  178 (216)
Q Consensus       171 ~~l~~~i~  178 (216)
                      .+|++.+.
T Consensus       162 ~~l~~~i~  169 (170)
T d2g6ba1         162 TAIAKELK  169 (170)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHcC
Confidence            99998875

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.1e-34  Score=203.98  Aligned_cols=164  Identities=62%  Similarity=1.109  Sum_probs=145.8

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+|+|.+|||||||+++++...+...+.++.+.+.....+..++..+.+.+||+||++.+..++..+++++|++|+|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            58999999999999999999999999988999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q 027949           95 YDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA  174 (216)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  174 (216)
                      ||.++++++..+..|+..+........|++++++|.|+.+  .....+++..++..++++|++|||++|+|++++|++|+
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~  159 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET--RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA  159 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT--CCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             EECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhh--hhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHH
Confidence            9999999999999988888887777889999999999743  55678889999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027949          175 RDIKQR  180 (216)
Q Consensus       175 ~~i~~~  180 (216)
                      +.+.++
T Consensus       160 ~~i~~k  165 (166)
T d1g16a_         160 KLIQEK  165 (166)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            988764

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-33  Score=204.23  Aligned_cols=163  Identities=46%  Similarity=0.801  Sum_probs=151.1

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+|+|.+|||||||+++|..+.+...+.++.+.......+...+..+.+.+||++|++.+..++..+++++|++++|
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   85 (170)
T d1r2qa_           6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVV   85 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEEE
Confidence            48999999999999999999999999988889998888888888999999999999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q 027949           95 YDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA  174 (216)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  174 (216)
                      ||.++.+++..+..|+..+......+.|+++|+||+|+.+ .+.+..++++.++...+++|++|||++|+||+++|.+|+
T Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~-~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~  164 (170)
T d1r2qa_          86 YDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN-KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA  164 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             eccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccc-cccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHH
Confidence            9999999999999999888887777899999999999865 466788999999999999999999999999999999998


Q ss_pred             HHHH
Q 027949          175 RDIK  178 (216)
Q Consensus       175 ~~i~  178 (216)
                      +.+.
T Consensus       165 ~~i~  168 (170)
T d1r2qa_         165 KKLP  168 (170)
T ss_dssp             HTSC
T ss_pred             HHHh
Confidence            7654

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.1e-35  Score=210.66  Aligned_cols=161  Identities=31%  Similarity=0.637  Sum_probs=140.2

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+|+|.+|||||||+++++++.+...+.++.+.+.....+..++..+.+.+||++|...+..++..+++++|++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            48999999999999999999999999888889888888888888888889999999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q 027949           95 YDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA  174 (216)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  174 (216)
                      ||+++++++..+..|+..+..... +.|+++|+||+|+.+..   ..++...++...+++|+++||++|.|++++|.+|+
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~~-~~piilvgnK~Dl~~~~---~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~  158 (170)
T d1i2ma_          83 FDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRK---VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  158 (170)
T ss_dssp             EETTSGGGGTTHHHHHHHHHHHHC-SCCEEEEEECCCCSCSC---CTTTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHH
T ss_pred             cccccccccchhHHHHHHHhhccC-CCceeeecchhhhhhhh---hhhHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            999999999999999988877654 79999999999996532   22345577888899999999999999999999999


Q ss_pred             HHHHH
Q 027949          175 RDIKQ  179 (216)
Q Consensus       175 ~~i~~  179 (216)
                      +.++.
T Consensus       159 ~~l~~  163 (170)
T d1i2ma_         159 RKLIG  163 (170)
T ss_dssp             HHHHT
T ss_pred             HHHcc
Confidence            98874

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-33  Score=204.60  Aligned_cols=161  Identities=33%  Similarity=0.482  Sum_probs=141.6

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+|+|.+|||||||+++++++.+...+.++.+.. .......++..+.+.+||++|.+.+......+++.+|++|+|
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~-~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDT-YRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEE-EEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeec-cccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            4899999999999999999999999888888877643 345667889889999999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949           95 YDVTDESSFNNIRNWIRNIEQHA--SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS  172 (216)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  172 (216)
                      ||+++++++..+..|+..+....  ..+.|++||+||+|+.+ .+.+..++++.+++.++++|++|||++|.|++++|..
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~-~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~  159 (171)
T d2erxa1          81 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP-SREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  159 (171)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             eecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccc-cccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHH
Confidence            99999999999999988776543  25789999999999854 4567788999999999999999999999999999999


Q ss_pred             HHHHH
Q 027949          173 IARDI  177 (216)
Q Consensus       173 l~~~i  177 (216)
                      |++.+
T Consensus       160 l~~~~  164 (171)
T d2erxa1         160 LLNLE  164 (171)
T ss_dssp             HHHTC
T ss_pred             HHHHH
Confidence            98754

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-33  Score=202.95  Aligned_cols=163  Identities=44%  Similarity=0.770  Sum_probs=149.8

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+|+|.+|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|.+.+..++..++..+|++|+|
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence            58999999999999999999999999988889988888888899999999999999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC--CCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949           95 YDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES--KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS  172 (216)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  172 (216)
                      ||++++.++..+..|+..+........|+++|+||+|+.+.  .+.+..++++.++..++++|+++||++|.||+++|.+
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~~  162 (170)
T d1ek0a_          83 YDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLG  162 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHH
Confidence            99999999999999998887777778999999999998542  3567888999999999999999999999999999999


Q ss_pred             HHHHH
Q 027949          173 IARDI  177 (216)
Q Consensus       173 l~~~i  177 (216)
                      |++.+
T Consensus       163 i~~~i  167 (170)
T d1ek0a_         163 IGEKI  167 (170)
T ss_dssp             HHTTS
T ss_pred             HHHHh
Confidence            87654

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-33  Score=203.63  Aligned_cols=167  Identities=42%  Similarity=0.738  Sum_probs=133.5

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEE-CCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      .+||+|+|.+|||||||+++|.+..+...+.++.+.......... +.....+.+||++|++.+...+..+++.++++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            689999999999999999999999988777777766666555554 3444778999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEecCCCCCHHH
Q 027949           94 VYDVTDESSFNNIRNWIRNIEQHA----SDNVNKILVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEE  168 (216)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~  168 (216)
                      |||++++.++..+..|+..+....    ....|++||+||+|+.+....+..++++.++..++ ++|++|||++|.||++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e  161 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDT  161 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHH
T ss_pred             EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Confidence            999999999999999998886543    24689999999999976556678888999999886 7999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 027949          169 VFFSIARDIKQRL  181 (216)
Q Consensus       169 l~~~l~~~i~~~~  181 (216)
                      +|.+|++.++++.
T Consensus       162 ~f~~l~~~~l~~~  174 (175)
T d1ky3a_         162 AFEEIARSALQQN  174 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999998764

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-33  Score=202.48  Aligned_cols=167  Identities=47%  Similarity=0.819  Sum_probs=151.7

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..+||+|+|.+|||||||+++|.++.+...+.++.+.......+.+++..+.+.+||++|++.+..++..+++++|++|+
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~   85 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL   85 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            45899999999999999999999999988888888888888888999999999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949           94 VYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS  172 (216)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  172 (216)
                      |||++++.++..+..|+..+..... ...|+++++||.|..  ...+...+++.+++.+++.|+++||++|+|++++|++
T Consensus        86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~--~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~  163 (177)
T d1x3sa1          86 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE--NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE  163 (177)
T ss_dssp             EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS--SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEECCCccccccchhhhhhhcccccccceeeEEEeeccccc--cccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHH
Confidence            9999999999999999988876543 468888999999974  4667888999999999999999999999999999999


Q ss_pred             HHHHHHHHhh
Q 027949          173 IARDIKQRLA  182 (216)
Q Consensus       173 l~~~i~~~~~  182 (216)
                      |++.+++...
T Consensus       164 l~~~l~~~p~  173 (177)
T d1x3sa1         164 LVEKIIQTPG  173 (177)
T ss_dssp             HHHHHHTSGG
T ss_pred             HHHHHccCcc
Confidence            9999987643

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-33  Score=201.48  Aligned_cols=162  Identities=39%  Similarity=0.665  Sum_probs=144.6

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+|+|.+|||||||+++++++.+...+.++.+ +.....+..++..+.+.+||++|.+.+......+++++|++++|
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   81 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeee
Confidence            48999999999999999999999998887777766 45566778899999999999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q 027949           95 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI  173 (216)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  173 (216)
                      ||+++++++..+..|+..+.... ..+.|++||+||+|+.+ .+....+++..++..++++|++|||++|.|++++|.+|
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~i  160 (167)
T d1kaoa_          82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES-EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI  160 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred             eeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhh-cccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHHH
Confidence            99999999999999998877644 35789999999999865 45677788999999999999999999999999999999


Q ss_pred             HHHHH
Q 027949          174 ARDIK  178 (216)
Q Consensus       174 ~~~i~  178 (216)
                      ++.+.
T Consensus       161 ~~~i~  165 (167)
T d1kaoa_         161 VRQMN  165 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            98765

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-33  Score=200.58  Aligned_cols=163  Identities=36%  Similarity=0.594  Sum_probs=141.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+|+|++|||||||+++++.+.+...+.|+.+..+. ..+..++..+.+.+||++|.+.+. ....+++.++++++||
T Consensus         3 iKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~-~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~   80 (168)
T d2atva1           3 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVY   80 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccc-ccccccccceEEEEeecccccccc-cchhhhcccccceeec
Confidence            89999999999999999999999998888888776554 445678888999999999998764 4566888999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCC-HHHHHHHH
Q 027949           96 DVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN-VEEVFFSI  173 (216)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l  173 (216)
                      |+++++++..+..|+..+... ...+.|+++|+||+|+.+ .+.+..++++.++..++++|++|||++|.| |+++|..|
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~-~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l  159 (168)
T d2atva1          81 DITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH-SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL  159 (168)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred             ccCCccchhhhhhhcccccccccccCcceeeeccchhhhh-hccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHH
Confidence            999999999999887665543 335799999999999964 456888999999999999999999999985 99999999


Q ss_pred             HHHHHHHh
Q 027949          174 ARDIKQRL  181 (216)
Q Consensus       174 ~~~i~~~~  181 (216)
                      ++.+.+++
T Consensus       160 ~~~i~~~r  167 (168)
T d2atva1         160 CREVRRRR  167 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99887764

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-33  Score=200.57  Aligned_cols=162  Identities=36%  Similarity=0.664  Sum_probs=144.8

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+|+|.+|||||||+++|+++.+...+.++.+..+. ..+..++..+.+.+||++|.+.+...+..+++.++++++|
T Consensus         3 e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv   81 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeec-cceeeeceeeeeeeeeccCccccccchhhhhhccccccee
Confidence            489999999999999999999999988888888775554 4466788889999999999999999899999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q 027949           95 YDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI  173 (216)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  173 (216)
                      ||++++.++..+..|+..+..... .+.|+++|+||+|+.+  +....++++.++..++++|++|||++|+||+++|.+|
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i  159 (166)
T d1ctqa_          82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL  159 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSC--CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             ecccccccHHHHHHHHHHHHHhcCCCCCeEEEEeccccccc--ccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHH
Confidence            999999999999999998877543 4689999999999853  5567888999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027949          174 ARDIKQ  179 (216)
Q Consensus       174 ~~~i~~  179 (216)
                      ++.+.+
T Consensus       160 ~~~i~~  165 (166)
T d1ctqa_         160 VREIRQ  165 (166)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998764

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.9e-33  Score=199.23  Aligned_cols=162  Identities=36%  Similarity=0.661  Sum_probs=142.8

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+|+|.+|||||||++++..+.+...+.++.+.. ....+..++..+.+.+||++|...+...+..+++++|++|+|
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   81 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDS-YRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEE-EEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccc-cceeEEeeeeEEEeccccccCcccccccccccccccceeEEe
Confidence            4899999999999999999999999988888877644 455667788889999999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh-CCeEEEEecCCCCCHHHHHHH
Q 027949           95 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEEVFFS  172 (216)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~  172 (216)
                      ||+++++++..+..|+..+.+.. ..+.|++||+||+|+.. ......+++..++... +++|++|||++|.|++++|.+
T Consensus        82 ~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~  160 (167)
T d1c1ya_          82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED-ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD  160 (167)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred             eeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCccc-ccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHHH
Confidence            99999999999999998887644 45789999999999965 4566777888888775 689999999999999999999


Q ss_pred             HHHHHH
Q 027949          173 IARDIK  178 (216)
Q Consensus       173 l~~~i~  178 (216)
                      |++.+.
T Consensus       161 l~~~i~  166 (167)
T d1c1ya_         161 LVRQIN  166 (167)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            998764

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.8e-33  Score=201.61  Aligned_cols=163  Identities=32%  Similarity=0.588  Sum_probs=140.4

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..+||+|+|.+|||||||+++|+.+.+...+.++.+ +.....+..++..+.+.+||++|++.+..++..+++++|++|+
T Consensus         4 ~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (183)
T d1mh1a_           4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (183)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             eeEEEEEECCCCCCHHHHHHHHHhCCCCccccccee-eceeeeeeccCcceEEEeecccccccchhhhhhcccccceeee
Confidence            459999999999999999999999998888888776 4455667789999999999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhC-CeEEEEec
Q 027949           94 VYDVTDESSFNNIRN-WIRNIEQHASDNVNKILVGNKADMDES-----------KRAVPTSKGQALADEYG-IKFFETSA  160 (216)
Q Consensus        94 v~d~~~~~~~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~Sa  160 (216)
                      |||++++++|..+.. |...+.. ...+.|++||+||+|+.+.           .......+...+++.++ ++|++|||
T Consensus        83 v~d~~~~~sf~~i~~~~~~~~~~-~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SA  161 (183)
T d1mh1a_          83 CFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  161 (183)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHH-HSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             eeccchHHHHHHHHHHHHHHHHH-hCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCC
Confidence            999999999999977 5554544 4457999999999998532           23355667888888887 79999999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q 027949          161 KTNLNVEEVFFSIARDIK  178 (216)
Q Consensus       161 ~~~~gi~~l~~~l~~~i~  178 (216)
                      ++|.||+++|..|++.++
T Consensus       162 k~~~~V~e~F~~l~~~il  179 (183)
T d1mh1a_         162 LTQRGLKTVFDEAIRAVL  179 (183)
T ss_dssp             TTCTTHHHHHHHHHHHHS
T ss_pred             CCCcCHHHHHHHHHHHHc
Confidence            999999999999998874

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-32  Score=198.30  Aligned_cols=165  Identities=31%  Similarity=0.447  Sum_probs=139.3

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCC---cccccccccccccccc
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAG---QERFRTITTAYYRGAM   89 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G---~~~~~~~~~~~~~~~d   89 (216)
                      ..+||+|+|.+|+|||||++++.+..+. ....++.+.+.....+..++..+.+.+||+++   ++++  ++..+++++|
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~   79 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD   79 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence            3589999999999999999999987654 34445666677788888999999999999775   4443  5667889999


Q ss_pred             EEEEEEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHH
Q 027949           90 GILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE  168 (216)
Q Consensus        90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  168 (216)
                      ++|+|||++++.++..+..|+..+.... ..+.|++||+||+|+.+ .+.+..++++.++..++++|++|||++|.|+++
T Consensus        80 ~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~-~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~  158 (172)
T d2g3ya1          80 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR-CREVSVSEGRACAVVFDCKFIETSAAVQHNVKE  158 (172)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred             eeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccc-cccccHHHHHHHHHHcCCeEEEEeCCCCcCHHH
Confidence            9999999999999999999988886643 35799999999999965 456788889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 027949          169 VFFSIARDIKQRL  181 (216)
Q Consensus       169 l~~~l~~~i~~~~  181 (216)
                      +|.+|++.+..++
T Consensus       159 ~f~~l~~~i~~rr  171 (172)
T d2g3ya1         159 LFEGIVRQVRLRR  171 (172)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcc
Confidence            9999999987764

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-32  Score=196.31  Aligned_cols=166  Identities=41%  Similarity=0.718  Sum_probs=145.1

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      ++..+||+|+|.+|||||||++++..+.+...+.++.+.......+..++..+.+.+||++|...+...+..++..++++
T Consensus         3 ~~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   82 (174)
T d1wmsa_           3 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   82 (174)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceE
Confidence            45678999999999999999999999999888888888888888888899999999999999998888899999999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEecCCCCCH
Q 027949           92 LLVYDVTDESSFNNIRNWIRNIEQHA----SDNVNKILVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNV  166 (216)
Q Consensus        92 i~v~d~~~~~~~~~~~~~~~~~~~~~----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi  166 (216)
                      ++++|.+++.++..+..|+..+....    ..+.|+++|+||+|+.+  +.+..++++.++...+ ++|++|||++|+||
T Consensus        83 i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~--~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI  160 (174)
T d1wmsa_          83 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE--RQVSTEEAQAWCRDNGDYPYFETSAKDATNV  160 (174)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS--CSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred             EEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh--ccCcHHHHHHHHHHcCCCeEEEEcCCCCcCH
Confidence            99999999999999999988876543    24689999999999853  5678889999998875 79999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027949          167 EEVFFSIARDIKQ  179 (216)
Q Consensus       167 ~~l~~~l~~~i~~  179 (216)
                      +++|++|++.++.
T Consensus       161 ~e~f~~l~~~il~  173 (174)
T d1wmsa_         161 AAAFEEAVRRVLA  173 (174)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998863

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.6e-32  Score=198.70  Aligned_cols=168  Identities=39%  Similarity=0.723  Sum_probs=148.1

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+|+|.+|||||||+++++++.+...+.++.+.+.....+...+..+.+.+||++|...+...+..++..+|+++++
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            48999999999999999999999999988999988888888888888889999999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCCccChHHHHHHHHH-hCCeEEEEecCCCCCHHHH
Q 027949           95 YDVTDESSFNNIRNWIRNIEQHAS----DNVNKILVGNKADMDESKRAVPTSKGQALADE-YGIKFFETSAKTNLNVEEV  169 (216)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l  169 (216)
                      +|.+++.++..+..|+..+.....    ...|+++|+||+|+.+  .....++...++.. .++++++|||++|.||+++
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~  159 (184)
T d1vg8a_          82 FDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN--RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQA  159 (184)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC--CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHH
T ss_pred             ecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc--cchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHH
Confidence            999999999999999987766432    3589999999999854  45666666667654 5689999999999999999


Q ss_pred             HHHHHHHHHHHhhcc
Q 027949          170 FFSIARDIKQRLADT  184 (216)
Q Consensus       170 ~~~l~~~i~~~~~~~  184 (216)
                      |++|++.++++..+.
T Consensus       160 f~~l~~~i~~~~~~~  174 (184)
T d1vg8a_         160 FQTIARNALKQETEV  174 (184)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccc
Confidence            999999998876654

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.4e-32  Score=198.79  Aligned_cols=164  Identities=24%  Similarity=0.466  Sum_probs=141.9

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+|+|.+|||||||+++++.+.+...+.++.. +.....+..++..+.+.+||++|++.+...+..+++++|++|+|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-ecccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            48999999999999999999999999888888765 44555667788899999999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhC-CeEEEEecCC
Q 027949           95 YDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES-----------KRAVPTSKGQALADEYG-IKFFETSAKT  162 (216)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  162 (216)
                      ||++++++|..+..|+.........+.|+++|+||+|+...           ...+..++...+++..+ ..|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~  160 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ  160 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred             eecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCC
Confidence            99999999999888655554544558999999999998532           34577888999999987 5899999999


Q ss_pred             CC-CHHHHHHHHHHHHHH
Q 027949          163 NL-NVEEVFFSIARDIKQ  179 (216)
Q Consensus       163 ~~-gi~~l~~~l~~~i~~  179 (216)
                      |. |++++|+.+++.+++
T Consensus       161 ~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         161 SENSVRDIFHVATLACVN  178 (179)
T ss_dssp             BHHHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHhc
Confidence            98 599999999998875

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=2.8e-31  Score=190.58  Aligned_cols=159  Identities=46%  Similarity=0.866  Sum_probs=141.0

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc-ccccccccccEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-ITTAYYRGAMGILL   93 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i~   93 (216)
                      .+||+|+|.+|||||||++++..+.+...+.++.+................+.+||++|...+.. .+..+++++|++|+
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il   81 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEE
Confidence            58999999999999999999999999888888888888888888999999999999999876654 46778999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCC---CCCHHHH
Q 027949           94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT---NLNVEEV  169 (216)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~gi~~l  169 (216)
                      |||+++++++..+..|+..+.... ..+.|++||+||+|+.+ ...+..++++.++..++++|++|||++   ++||+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~  160 (165)
T d1z06a1          82 VYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS-AIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAI  160 (165)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHH
T ss_pred             EEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchh-ccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHH
Confidence            999999999999999998887754 35789999999999965 456788899999999999999999987   5699999


Q ss_pred             HHHHH
Q 027949          170 FFSIA  174 (216)
Q Consensus       170 ~~~l~  174 (216)
                      |.+|+
T Consensus       161 F~~lA  165 (165)
T d1z06a1         161 FMTLA  165 (165)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            99873

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3e-30  Score=186.83  Aligned_cols=164  Identities=24%  Similarity=0.388  Sum_probs=135.4

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+|+|.+|||||||++++++..+... .++.+ +.....+..++..+.+.+||++|+..+     .+++.+|++|+|
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~~~f~~~-~~t~~-~~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~ilV   77 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTES-EQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIFV   77 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHHSCCCCC-CCSSC-EEEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCc-CCccc-eeEEEEeecCceEEEEEEeeccccccc-----ccccccceeEEE
Confidence            59999999999999999999999988643 34433 344567788999999999999998643     478899999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCC-CCccChHHHHHHHHH-hCCeEEEEecCCCCCHHHH
Q 027949           95 YDVTDESSFNNIRNWIRNIEQHA---SDNVNKILVGNKADMDES-KRAVPTSKGQALADE-YGIKFFETSAKTNLNVEEV  169 (216)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l  169 (216)
                      ||++++++|..+..|+..+....   ....|+++|+||.|+... .+.+..+++..++.. .+++|++|||++|.|++++
T Consensus        78 fd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~~  157 (175)
T d2bmja1          78 FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRV  157 (175)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHHH
T ss_pred             eecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHHH
Confidence            99999999999999988876543   356799999999997532 345667788888655 4689999999999999999


Q ss_pred             HHHHHHHHHHHhhccc
Q 027949          170 FFSIARDIKQRLADTD  185 (216)
Q Consensus       170 ~~~l~~~i~~~~~~~~  185 (216)
                      |..|++.+.....+++
T Consensus       158 F~~l~~~i~~~~~~~~  173 (175)
T d2bmja1         158 FQEVAQKVVTLRKQQQ  173 (175)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcc
Confidence            9999999998876653

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.97  E-value=8.4e-31  Score=187.98  Aligned_cols=156  Identities=22%  Similarity=0.420  Sum_probs=127.1

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+|+|++|||||||+++|....+...+.+|.+..  ...+..++  +.+.+||+||+..+...+..++..++++++|
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFN--MRKITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEE--EEEEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceee--eeeeeeee--EEEEEeeccccccccccccccccccchhhcc
Confidence            4899999999999999999999999888787776644  44556666  7899999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHH-----HHHhCCeEEEEecCCCCCHHH
Q 027949           95 YDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKRAVPTSKGQAL-----ADEYGIKFFETSAKTNLNVEE  168 (216)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~  168 (216)
                      ||+++++++.....|+..+... ...+.|++||+||.|+.+..   ...+..+.     +...+++++++||++|+|+++
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e  154 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL---DEKELIEKMNLSAIQDREICCYSISCKEKDNIDI  154 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             cccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhh---hHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHH
Confidence            9999999999998877766443 34579999999999986432   22222222     223456899999999999999


Q ss_pred             HHHHHHHHH
Q 027949          169 VFFSIARDI  177 (216)
Q Consensus       169 l~~~l~~~i  177 (216)
                      +|+||++++
T Consensus       155 ~~~~l~~~~  163 (164)
T d1zd9a1         155 TLQWLIQHS  163 (164)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHcc
Confidence            999998753

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.97  E-value=2.7e-30  Score=185.38  Aligned_cols=157  Identities=23%  Similarity=0.391  Sum_probs=123.9

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+|+|.+|||||||+++|.+..+. ...++.+  .....+..++  +.+.+||++|++.++..+..+++.+++++++
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSS--EEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEe--eeeeeccccc--cceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            389999999999999999999987764 3445544  4455566776  8899999999999999999999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHHH-HhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHH-----HHhCCeEEEEecCCCCCHHH
Q 027949           95 YDVTDESSFNNIRNWIRNIE-QHASDNVNKILVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETSAKTNLNVEE  168 (216)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~~-~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~  168 (216)
                      ||+++..++.....++..+. .....+.|++||+||+|+.+..   ...+.....     ...++.+++|||++|+|+++
T Consensus        77 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e  153 (165)
T d1ksha_          77 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL---SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLP  153 (165)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             eecccchhHHHHHHhhhhhhhhcccCCCceEEEEecccccccc---CHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHH
Confidence            99999999988877665443 3334579999999999986422   222222221     12246899999999999999


Q ss_pred             HHHHHHHHHHH
Q 027949          169 VFFSIARDIKQ  179 (216)
Q Consensus       169 l~~~l~~~i~~  179 (216)
                      +|+||++++..
T Consensus       154 ~~~~l~~~i~~  164 (165)
T d1ksha_         154 GIDWLLDDISS  164 (165)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHc
Confidence            99999998764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.97  E-value=1.5e-30  Score=188.67  Aligned_cols=161  Identities=22%  Similarity=0.370  Sum_probs=124.2

Q ss_pred             CCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccE
Q 027949           11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (216)
Q Consensus        11 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   90 (216)
                      ..+..+||+|+|.+|||||||+++|.+..+... .++.+  .....+...+  +.+.+||++|.+.+...+..+++.+|+
T Consensus        12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~-~~~~~--~~~~~i~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~   86 (176)
T d1fzqa_          12 APDQEVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQG--FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDI   86 (176)
T ss_dssp             CCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-EEETT--EEEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSE
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcc-eeeee--eeEEEeccCC--eeEeEeeccccccchhHHHHHhhccce
Confidence            345569999999999999999999998877532 23333  4445566666  789999999999999999999999999


Q ss_pred             EEEEEeCCCHhHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHH--HHHHHhCCeEEEEecCCCCCHH
Q 027949           91 ILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKRAVPTSKGQ--ALADEYGIKFFETSAKTNLNVE  167 (216)
Q Consensus        91 ~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~gi~  167 (216)
                      +|+|||++++.++..+..|+..+... ...+.|++||+||+|+.+........+..  .++....+.+++|||++|+|++
T Consensus        87 ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~  166 (176)
T d1fzqa_          87 LIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ  166 (176)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             eEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCHH
Confidence            99999999999999998877666543 33578999999999996532211111111  1122334689999999999999


Q ss_pred             HHHHHHHHH
Q 027949          168 EVFFSIARD  176 (216)
Q Consensus       168 ~l~~~l~~~  176 (216)
                      ++|+||++.
T Consensus       167 e~~~~l~~~  175 (176)
T d1fzqa_         167 DGMNWVCKN  175 (176)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhc
Confidence            999999875

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.97  E-value=1.1e-30  Score=190.52  Aligned_cols=162  Identities=23%  Similarity=0.377  Sum_probs=123.4

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEE
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   91 (216)
                      ....+||+|+|.+|||||||+++|.+..+.. ..++.+  .....+...+  +.+.+||++|++.+...+..++..+|++
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~i   88 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQIGEVVT-TKPTIG--FNVETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAV   88 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTCCSEEEE-ECSSTT--CCEEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCc-cccccc--eEEEEEeeCC--EEEEEEecccccccchhHHhhhccceeE
Confidence            3446999999999999999999998876543 334433  3344555666  7899999999999999999999999999


Q ss_pred             EEEEeCCCHhHHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCCccChHHHHHH-----HHHhCCeEEEEecCCCCC
Q 027949           92 LLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDESKRAVPTSKGQAL-----ADEYGIKFFETSAKTNLN  165 (216)
Q Consensus        92 i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~g  165 (216)
                      ++|+|++++.++.....|+..+.. ....+.|++||+||+|+.+.   ....++...     +...++.+++|||++|+|
T Consensus        89 i~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~g  165 (182)
T d1moza_          89 IFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA---LSASEVSKELNLVELKDRSWSIVASSAIKGEG  165 (182)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC---CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBT
T ss_pred             EEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccc---cCHHHHHHHHHHHHHhhCCCEEEEEECCCCCC
Confidence            999999999999998887766544 33457999999999998542   223332222     233457899999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 027949          166 VEEVFFSIARDIKQRL  181 (216)
Q Consensus       166 i~~l~~~l~~~i~~~~  181 (216)
                      ++++|+||++.+.+++
T Consensus       166 v~e~~~~l~~~i~~~~  181 (182)
T d1moza_         166 ITEGLDWLIDVIKEEQ  181 (182)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcC
Confidence            9999999999987753

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.96  E-value=1.5e-29  Score=182.86  Aligned_cols=159  Identities=21%  Similarity=0.424  Sum_probs=122.3

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..+||+++|.+|||||||++++.+..+.. ..++.+  ..........  +.+.+||+||...++..+..+++.++++|+
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~   85 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVG--FNVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   85 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTTCCCCEE-EEEETT--EEEEEEEETT--EEEEEEEESCCGGGHHHHGGGTTTCCEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCC-ccceee--eeEEEeeccc--eeeEEecCCCcchhhhHHHhhhcccceEEE
Confidence            35999999999999999999999877543 223333  3344455555  789999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCCccChHH--HHHHHHHhCCeEEEEecCCCCCHHHHH
Q 027949           94 VYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDESKRAVPTSK--GQALADEYGIKFFETSAKTNLNVEEVF  170 (216)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~gi~~l~  170 (216)
                      |+|+++.+++..+..|+..+.. ......|++||+||+|+.+.........  ....+...++.+++|||++|+|++++|
T Consensus        86 v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~~  165 (173)
T d1e0sa_          86 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGL  165 (173)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHH
T ss_pred             EEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHHHH
Confidence            9999999999999887766544 3345799999999999965322211111  111223335789999999999999999


Q ss_pred             HHHHHHH
Q 027949          171 FSIARDI  177 (216)
Q Consensus       171 ~~l~~~i  177 (216)
                      +||.+.+
T Consensus       166 ~~l~~~~  172 (173)
T d1e0sa_         166 TWLTSNY  172 (173)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhc
Confidence            9998764

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.95  E-value=3.7e-28  Score=172.78  Aligned_cols=157  Identities=20%  Similarity=0.365  Sum_probs=119.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEE
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~   95 (216)
                      +||+|+|++|||||||+++|.++++.........   .......  ..+.+.+||++|...+...+..++..++++++++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF---NVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSC---CEEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceee---EEEEEee--eeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            5899999999999999999999887654443322   2223333  3488999999999999888999999999999999


Q ss_pred             eCCCHhHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCc--cChHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q 027949           96 DVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKRA--VPTSKGQALADEYGIKFFETSAKTNLNVEEVFFS  172 (216)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  172 (216)
                      |+.++.++..+..|+..+... .....|+++++||.|+.+....  +.......++...++.+++|||++|+|++++|+|
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~  155 (160)
T d1r8sa_          76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW  155 (160)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred             EecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHH
Confidence            999999999988877666543 3356899999999998643211  1111112233344679999999999999999999


Q ss_pred             HHHHH
Q 027949          173 IARDI  177 (216)
Q Consensus       173 l~~~i  177 (216)
                      |.+.+
T Consensus       156 l~~~l  160 (160)
T d1r8sa_         156 LSNQL  160 (160)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            98753

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.93  E-value=1.4e-25  Score=162.18  Aligned_cols=156  Identities=19%  Similarity=0.303  Sum_probs=115.6

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ..+||+|+|.+|||||||+++|.+.++.... ++.+  .....+...+  +.+.+||+++.+.....+..++..++++++
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~-~~~~--~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~   88 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIG--SNVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV   88 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCEEEE-CCSC--SSCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCccc-cccc--eeEEEEeecc--eEEEEeccccccccccchhhhhccceeeee
Confidence            3489999999999999999999998765322 2222  2334444555  788999999999999999999999999999


Q ss_pred             EEeCCCHhHHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCCccChHHHHHHH-----HHhCCeEEEEecCCCCCHH
Q 027949           94 VYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETSAKTNLNVE  167 (216)
Q Consensus        94 v~d~~~~~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~  167 (216)
                      ++|.++..++.....+...... ....+.|+++|+||+|+.....   ..+.....     ...+++++++||++|+|++
T Consensus        89 v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~---~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~  165 (177)
T d1zj6a1          89 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT---VAEISQFLKLTSIKDHQWHIQACCALTGEGLC  165 (177)
T ss_dssp             EEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC---HHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             ecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCc---HHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHH
Confidence            9999999988887665544433 3335799999999999865332   22222222     2334689999999999999


Q ss_pred             HHHHHHHHHH
Q 027949          168 EVFFSIARDI  177 (216)
Q Consensus       168 ~l~~~l~~~i  177 (216)
                      ++|+||.+.+
T Consensus       166 e~~~~L~~~l  175 (177)
T d1zj6a1         166 QGLEWMMSRL  175 (177)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999875

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.92  E-value=9.9e-25  Score=155.99  Aligned_cols=160  Identities=24%  Similarity=0.458  Sum_probs=120.7

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+++|.+|||||||++++.+..+... .++.+  ........++  +.+.+||.+|...+.......+...++++++
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~~~~~~~-~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYV   79 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSS--EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCcce-ecccc--eeeeeeccCc--eEEEEeeccccccccccchhhhhhhhhhhhh
Confidence            39999999999999999999999887642 23333  3344445566  7889999999999998899999999999999


Q ss_pred             EeCCCHhHHHHHHHHHHHH-HHhcCCCCcEEEEEeCCCCCCCCCc--cChHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q 027949           95 YDVTDESSFNNIRNWIRNI-EQHASDNVNKILVGNKADMDESKRA--VPTSKGQALADEYGIKFFETSAKTNLNVEEVFF  171 (216)
Q Consensus        95 ~d~~~~~~~~~~~~~~~~~-~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  171 (216)
                      +|+.+..++.....++... ........|+++++||.|+.+....  +.......++...+++|+++||++|+|++++|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~  159 (169)
T d1upta_          80 VDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAME  159 (169)
T ss_dssp             EETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHH
T ss_pred             hhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHH
Confidence            9999888877776654443 3334457899999999998643221  111111223334457999999999999999999


Q ss_pred             HHHHHHHH
Q 027949          172 SIARDIKQ  179 (216)
Q Consensus       172 ~l~~~i~~  179 (216)
                      +|++.+.+
T Consensus       160 ~l~~~l~~  167 (169)
T d1upta_         160 WLVETLKS  167 (169)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            99987754

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=9.7e-25  Score=158.03  Aligned_cols=157  Identities=18%  Similarity=0.117  Sum_probs=111.2

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccc--------ccc
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTA   83 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~   83 (216)
                      .+.-.|+|+|.+|||||||+++|++.+.. ....+..+...........+  ..+.+|||||.......        ...
T Consensus         3 ~~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~   80 (178)
T d1wf3a1           3 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYE   80 (178)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccccccchhccccccc
Confidence            45568999999999999999999987653 23344445555555666666  67899999997543322        234


Q ss_pred             ccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEecCC
Q 027949           84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKT  162 (216)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  162 (216)
                      .++++|++|+|+|++++..... ..|...+... ..+.|+++|+||+|+...    ..+....+....+ ..++++||++
T Consensus        81 ~~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~-~~~~piilv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~iSA~~  154 (178)
T d1wf3a1          81 ALADVNAVVWVVDLRHPPTPED-ELVARALKPL-VGKVPILLVGNKLDAAKY----PEEAMKAYHELLPEAEPRMLSALD  154 (178)
T ss_dssp             HTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGG-TTTSCEEEEEECGGGCSS----HHHHHHHHHHTSTTSEEEECCTTC
T ss_pred             ccccccceeeeechhhhhcccc-cchhhheecc-ccchhhhhhhcccccccC----HHHHHHHHHhhcccCceEEEecCC
Confidence            4678999999999988644322 3344444433 346899999999998542    1233344444444 5889999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027949          163 NLNVEEVFFSIARDI  177 (216)
Q Consensus       163 ~~gi~~l~~~l~~~i  177 (216)
                      |.|+++|+++|++.+
T Consensus       155 ~~gi~~L~~~i~~~l  169 (178)
T d1wf3a1         155 ERQVAELKADLLALM  169 (178)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHhC
Confidence            999999999998754

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1e-23  Score=149.95  Aligned_cols=151  Identities=21%  Similarity=0.328  Sum_probs=116.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   96 (216)
                      ||+++|++|||||||+++|.+..+.. ..++.+  .......+.+  ..+.+||++|...+...+..++..++++++++|
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWH--PTSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC-CCCCCS--CEEEEECCTT--CCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCe-eeceee--EeEEEeccCC--eeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence            79999999999999999999988753 444444  3334444555  678899999999899999999999999999999


Q ss_pred             CCCHhHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHH------------HHhCCeEEEEecCCC
Q 027949           97 VTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKRAVPTSKGQALA------------DEYGIKFFETSAKTN  163 (216)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~------------~~~~~~~~~~Sa~~~  163 (216)
                      .++...+.....++...... .....|+++++||.|+...   ....+.....            ....+.+++|||++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg  153 (166)
T d2qtvb1          77 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA---VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMR  153 (166)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSC---CCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTT
T ss_pred             ccchhhhhhhhHHHHhhhhhhccCCceEEEEecccccccc---CCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCC
Confidence            99999988887766655443 3357899999999998542   2222222221            122357999999999


Q ss_pred             CCHHHHHHHHHH
Q 027949          164 LNVEEVFFSIAR  175 (216)
Q Consensus       164 ~gi~~l~~~l~~  175 (216)
                      +|++++|+||.+
T Consensus       154 ~Gv~e~~~~l~~  165 (166)
T d2qtvb1         154 NGYLEAFQWLSQ  165 (166)
T ss_dssp             BSHHHHHHHHTT
T ss_pred             CCHHHHHHHHhC
Confidence            999999999975

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=6e-25  Score=156.46  Aligned_cols=151  Identities=23%  Similarity=0.282  Sum_probs=112.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc--------ccccccc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------ITTAYYR   86 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~   86 (216)
                      +||+++|.+|||||||+++|++.+.. ....++.+.+.....+...+  ..+.+||++|......        ....++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHHH
Confidence            79999999999999999999987754 34445555555566677777  6788999999543322        1334567


Q ss_pred             cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCH
Q 027949           87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV  166 (216)
Q Consensus        87 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  166 (216)
                      .+|++++++|..+...+.....|...+... ..+.|+++|+||+|+.+......        ...+.+++++||++|+|+
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~iilv~NK~Dl~~~~~~~~--------~~~~~~~~~iSAk~~~gi  150 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEIWPEFIARL-PAKLPITVVRNKADITGETLGMS--------EVNGHALIRLSARTGEGV  150 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHHS-CTTCCEEEEEECHHHHCCCCEEE--------EETTEEEEECCTTTCTTH
T ss_pred             hccccceeeccccccchhhhhhhhhhhhhc-ccccceeeccchhhhhhhHHHHH--------HhCCCcEEEEECCCCCCH
Confidence            899999999999887766666555444433 44789999999999865332211        123468999999999999


Q ss_pred             HHHHHHHHHHH
Q 027949          167 EEVFFSIARDI  177 (216)
Q Consensus       167 ~~l~~~l~~~i  177 (216)
                      ++++++|.+.+
T Consensus       151 ~~L~~~l~~~l  161 (161)
T d2gj8a1         151 DVLRNHLKQSM  161 (161)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHhhC
Confidence            99999998753

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=5.3e-24  Score=155.84  Aligned_cols=157  Identities=20%  Similarity=0.234  Sum_probs=116.0

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+++|..|||||||+++|....++..     +  .....+...+  +.+.+||++|++.+...+..+++.++++++|
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~t~-----~--~~~~~~~~~~--~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v   72 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEAGT-----G--IVETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFC   72 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSCCC-----S--EEEEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCc-----c--EEEEEEEeee--eeeeeeccccccccccchhhcccCCceeeeE
Confidence            48999999999999999999987665432     2  2234455555  8899999999999999999999999999999


Q ss_pred             EeCCCHhHH-----------HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC--------------CCccChHHHHH---
Q 027949           95 YDVTDESSF-----------NNIRNWIRNIEQHASDNVNKILVGNKADMDES--------------KRAVPTSKGQA---  146 (216)
Q Consensus        95 ~d~~~~~~~-----------~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~~---  146 (216)
                      +|+++.+++           +....|...+........|+++++||.|+...              .......+...   
T Consensus        73 ~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (195)
T d1svsa1          73 VALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQ  152 (195)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHH
T ss_pred             EeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHH
Confidence            999887654           23344555555555567899999999996210              01112222211   


Q ss_pred             --HHHH------hCCeEEEEecCCCCCHHHHHHHHHHHHHHH
Q 027949          147 --LADE------YGIKFFETSAKTNLNVEEVFFSIARDIKQR  180 (216)
Q Consensus       147 --~~~~------~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  180 (216)
                        +...      ..+.+++|||++|.||+++|+.+.+.++++
T Consensus       153 ~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         153 CQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             HHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence              1111      125678999999999999999999988765

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=2.3e-23  Score=152.99  Aligned_cols=161  Identities=21%  Similarity=0.166  Sum_probs=123.3

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+++|..|||||||++++....+.  +.||.+.+.  ..+....  +.+.+||++|++.+...+..+++.+++++++
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   75 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIE--YPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFL   75 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEE--EEEECSS--CEEEEEECCCSTTGGGGGGGGCSSCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEE--EEEeccc--eeeeeccccccccccccccccccccceeeEe
Confidence            489999999999999999999888763  567777543  3444555  7899999999999999999999999999999


Q ss_pred             EeCCCHh-----------HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC---------------CccChHHHHHHH
Q 027949           95 YDVTDES-----------SFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK---------------RAVPTSKGQALA  148 (216)
Q Consensus        95 ~d~~~~~-----------~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~---------------~~~~~~~~~~~~  148 (216)
                      +|+++..           .++....|...+......+.|+++++||.|+....               ..........+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  155 (200)
T d2bcjq2          76 VALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFI  155 (200)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHH
T ss_pred             eeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHH
Confidence            9998753           34556667777777666789999999999973211               111222223322


Q ss_pred             HH----------hCCeEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 027949          149 DE----------YGIKFFETSAKTNLNVEEVFFSIARDIKQRL  181 (216)
Q Consensus       149 ~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  181 (216)
                      ..          ..+.+++|||++|.||+++|+.|.+.+++..
T Consensus       156 ~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~n  198 (200)
T d2bcjq2         156 LKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  198 (200)
T ss_dssp             HHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHHh
Confidence            11          1256789999999999999999999988653

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=1.3e-23  Score=152.31  Aligned_cols=158  Identities=15%  Similarity=0.149  Sum_probs=105.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccc----cc---ccccccccc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR----TI---TTAYYRGAM   89 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~~---~~~~~~~~d   89 (216)
                      .|+|+|.+|||||||+|+|++.........+.+........... ....+.+|||||.....    ..   ....+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVS-EEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECS-SSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeec-CCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            48999999999999999999876544333444444444433332 22578899999953211    11   223356789


Q ss_pred             EEEEEEeCCCH--hHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHH
Q 027949           90 GILLVYDVTDE--SSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE  167 (216)
Q Consensus        90 ~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  167 (216)
                      ++++++|....  ..+.....++....... .+.|+++|+||+|+.+.   ...+...+.....+.+++++||++|+|++
T Consensus        82 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~iiv~NK~D~~~~---~~~~~~~~~~~~~~~~~~~iSA~tg~gid  157 (180)
T d1udxa2          82 VLLYVLDAADEPLKTLETLRKEVGAYDPAL-LRRPSLVALNKVDLLEE---EAVKALADALAREGLAVLPVSALTGAGLP  157 (180)
T ss_dssp             EEEEEEETTSCHHHHHHHHHHHHHHHCHHH-HHSCEEEEEECCTTSCH---HHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred             hhhhhcccccccccchhhhhhhhhcccccc-chhhhhhhhhhhhhhhH---HHHHHHHHHHHhcCCeEEEEEcCCCCCHH
Confidence            99999998654  23333333433322211 25799999999998542   22344555556678899999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027949          168 EVFFSIARDIKQ  179 (216)
Q Consensus       168 ~l~~~l~~~i~~  179 (216)
                      +|++.|.+.+..
T Consensus       158 ~L~~~i~~~l~~  169 (180)
T d1udxa2         158 ALKEALHALVRS  169 (180)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhh
Confidence            999999887743

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=2.6e-23  Score=149.43  Aligned_cols=158  Identities=22%  Similarity=0.218  Sum_probs=102.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCcccc---------ccccccccc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF---------RTITTAYYR   86 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~~   86 (216)
                      +|+|+|.+|||||||+++|++.... ....+..+.......+...+  ..+.+||++|....         ......++.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   79 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccc--cccccccccceeeeeccccccccccccccccc
Confidence            6899999999999999999987653 22333334344445555666  67899999994221         122344467


Q ss_pred             cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCH
Q 027949           87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV  166 (216)
Q Consensus        87 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  166 (216)
                      .+|+++++++.+....... ..++..+...   +.|+++|+||+|+.+.   ...+...++.+.....++++||++|.|+
T Consensus        80 ~ad~i~~~~~~~~~~~~~~-~~~~~~l~~~---~~pviiv~NK~Dl~~~---~~~~~~~~~~~~~~~~~i~iSAk~g~gi  152 (171)
T d1mkya1          80 EADLVLFVVDGKRGITKED-ESLADFLRKS---TVDTILVANKAENLRE---FEREVKPELYSLGFGEPIPVSAEHNINL  152 (171)
T ss_dssp             TCSEEEEEEETTTCCCHHH-HHHHHHHHHH---TCCEEEEEESCCSHHH---HHHHTHHHHGGGSSCSCEECBTTTTBSH
T ss_pred             cCcEEEEeecccccccccc-cccccccccc---cccccccchhhhhhhh---hhhHHHHHHHhcCCCCeEEEecCCCCCH
Confidence            8999999999876543322 3344444433   6899999999998531   1222223333333357899999999999


Q ss_pred             HHHHHHHHHHHHHHhhc
Q 027949          167 EEVFFSIARDIKQRLAD  183 (216)
Q Consensus       167 ~~l~~~l~~~i~~~~~~  183 (216)
                      ++++++|.+.+.+...+
T Consensus       153 d~L~~~i~~~l~e~~~~  169 (171)
T d1mkya1         153 DTMLETIIKKLEEKGLD  169 (171)
T ss_dssp             HHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhCCCCCCC
Confidence            99999999988776543

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.89  E-value=9.7e-23  Score=147.68  Aligned_cols=157  Identities=20%  Similarity=0.299  Sum_probs=112.6

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   92 (216)
                      +..+||+++|.+|||||||+++|.+..+... .++.+  .....+..++  ..+.+||+.+...+...+..+++..++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~-~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLH--PTSEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   85 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCC--CSCEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcce-ecccc--cceeEEEecc--cccccccccchhhhhhHHhhhhcccceee
Confidence            3458999999999999999999998876532 33333  3334456666  57789999999999888999999999999


Q ss_pred             EEEeCCCHhHHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH-----------------hCCe
Q 027949           93 LVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDESKRAVPTSKGQALADE-----------------YGIK  154 (216)
Q Consensus        93 ~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~  154 (216)
                      +++|+.+...+.....++..... ....+.|+++++||.|+...   .....+......                 .++.
T Consensus        86 ~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (186)
T d1f6ba_          86 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA---ISEERLREMFGLYGQTTGKGSVSLKELNARPLE  162 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC---CCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEE
T ss_pred             eeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCcccc---CCHHHHHHHHhhcccchhhhhhhHHHhhcCCCE
Confidence            99999999888877765444433 33457999999999998542   333443333321                 1246


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHH
Q 027949          155 FFETSAKTNLNVEEVFFSIARDI  177 (216)
Q Consensus       155 ~~~~Sa~~~~gi~~l~~~l~~~i  177 (216)
                      +++|||++|+|++++|+||.+.+
T Consensus       163 ~~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         163 VFMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             EEECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEEeCCCCCCHHHHHHHHHHhh
Confidence            99999999999999999998753

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=2e-22  Score=146.55  Aligned_cols=160  Identities=21%  Similarity=0.150  Sum_probs=104.5

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc------------c
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------------I   80 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------~   80 (216)
                      ..+||+|+|.+|+|||||+|+|++.... ....+..+.......+..++  ..+.++|++|......            .
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~   84 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKYSNYR   84 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--EEEEESSCSCC-----------CCSCCHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCC--ceeeeeccCCccccccccccccccchhHH
Confidence            3599999999999999999999987643 22333444445555667777  5678899999643221            2


Q ss_pred             cccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH----h-CCeE
Q 027949           81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADE----Y-GIKF  155 (216)
Q Consensus        81 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----~-~~~~  155 (216)
                      ....++.+|++++|+|++.+... ....+...+...   +.|+++|+||+|+...... ...+.......    . .+++
T Consensus        85 ~~~~~~~~dvii~v~d~~~~~~~-~~~~~~~~~~~~---~~~~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~i  159 (186)
T d1mkya2          85 VVDSIEKADVVVIVLDATQGITR-QDQRMAGLMERR---GRASVVVFNKWDLVVHREK-RYDEFTKLFREKLYFIDYSPL  159 (186)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHHT---TCEEEEEEECGGGSTTGGG-CHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHhcCCEEEEeecccccchh-hHHHHHHHHHHc---CCceeeeccchhhhcchhh-hhhhHHHHHHHHhcccCCCeE
Confidence            23345678999999999865332 222333333332   6899999999998643322 22333322222    2 2589


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHH
Q 027949          156 FETSAKTNLNVEEVFFSIARDIKQR  180 (216)
Q Consensus       156 ~~~Sa~~~~gi~~l~~~l~~~i~~~  180 (216)
                      +++||++|.|+++|+++|.+.+..+
T Consensus       160 ~~vSa~~g~gv~~L~~~i~~~~~~~  184 (186)
T d1mkya2         160 IFTSADKGWNIDRMIDAMNLAYASY  184 (186)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            9999999999999999998877654

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.89  E-value=6.5e-23  Score=148.46  Aligned_cols=159  Identities=18%  Similarity=0.182  Sum_probs=104.8

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccc-------cceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccccc
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFI-------TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG   87 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   87 (216)
                      .++|+++|.+|+|||||+|+|++........       .+.+.......+..++  ..+.++|++|+..+.......+..
T Consensus         5 ~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~l~~   82 (179)
T d1wb1a4           5 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAADI   82 (179)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTTS
T ss_pred             CEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCC--ccccccccccccccccchhhhhhh
Confidence            4799999999999999999999744221111       1111222222333455  678899999998887777778889


Q ss_pred             ccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccCh-HHHHHHHHH----hCCeEEEEecCC
Q 027949           88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPT-SKGQALADE----YGIKFFETSAKT  162 (216)
Q Consensus        88 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~-~~~~~~~~~----~~~~~~~~Sa~~  162 (216)
                      +|++++++|+.+....... ..+..+..   .+.|+++|+||+|+.+....... +....+...    .+.+++++||++
T Consensus        83 ~d~~ilv~d~~~g~~~~~~-~~~~~~~~---~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~~  158 (179)
T d1wb1a4          83 IDLALIVVDAKEGPKTQTG-EHMLILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKT  158 (179)
T ss_dssp             CCEEEEEEETTTCSCHHHH-HHHHHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTT
T ss_pred             ccccccccccccccchhhh-hhhhhhhh---cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEccC
Confidence            9999999999876433222 22222322   27899999999998653211111 122222222    236899999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 027949          163 NLNVEEVFFSIARDIKQ  179 (216)
Q Consensus       163 ~~gi~~l~~~l~~~i~~  179 (216)
                      |+|+++++++|.+.+.+
T Consensus       159 g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         159 GFGVDELKNLIITTLNN  175 (179)
T ss_dssp             CTTHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHhcCCc
Confidence            99999999999887764

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=2.8e-22  Score=147.27  Aligned_cols=160  Identities=24%  Similarity=0.262  Sum_probs=110.5

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEEE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v   94 (216)
                      .+||+++|.+|||||||++++.   +...+.||.+.  ....+...+  ..+.+||++|++.+...+..+++.+++++++
T Consensus         2 ~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~--~~~~~~~~~--~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGI--HEYDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSE--EEEEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeee--EEEEEeeee--eeeeeecccceeeecccccccccccceeEEE
Confidence            4899999999999999999994   34456677763  445566666  7899999999999999999999999999999


Q ss_pred             EeCCCHh----------HHHHHHHHHHHH-HHhcCCCCcEEEEEeCCCCCCCC---------------CccChHHHHHHH
Q 027949           95 YDVTDES----------SFNNIRNWIRNI-EQHASDNVNKILVGNKADMDESK---------------RAVPTSKGQALA  148 (216)
Q Consensus        95 ~d~~~~~----------~~~~~~~~~~~~-~~~~~~~~p~ivv~nK~Dl~~~~---------------~~~~~~~~~~~~  148 (216)
                      ++.++..          .+.....++..+ ......+.|++|++||.|+.+..               .....+.+.++.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  154 (200)
T d1zcba2          75 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFL  154 (200)
T ss_dssp             EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHH
T ss_pred             EEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHH
Confidence            9998743          234444444443 33334579999999999973210               011223333332


Q ss_pred             HH-----------hCCeEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 027949          149 DE-----------YGIKFFETSAKTNLNVEEVFFSIARDIKQRL  181 (216)
Q Consensus       149 ~~-----------~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  181 (216)
                      ..           ..+.+++|||+++.+|+++|+.+.+.++++.
T Consensus       155 ~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~~  198 (200)
T d1zcba2         155 VECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDN  198 (200)
T ss_dssp             HHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHHh
Confidence            21           1256778999999999999999999887753

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.88  E-value=5.8e-23  Score=149.11  Aligned_cols=150  Identities=20%  Similarity=0.200  Sum_probs=99.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccc---------------ccccc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---------------FRTIT   81 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------------~~~~~   81 (216)
                      .|+++|.+|||||||+|+|++........++.+.+.  ..+...+    +.+|||||...               +....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~--~~~~~~~----~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWKN----HKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEETT----EEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeecc--ccccccc----ceecccCCceeccccccccccccchhhhhhh
Confidence            589999999999999999999877655555555332  3344444    46799999421               11123


Q ss_pred             ccccccccEEEEEEeCCCHhHHHHHH----------HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh
Q 027949           82 TAYYRGAMGILLVYDVTDESSFNNIR----------NWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEY  151 (216)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~~~~~~~----------~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~  151 (216)
                      ...++.+|++++|+|+..+.......          .++..+..   .+.|+++|+||+|+.+...    .....+....
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~---~~~p~iiv~NK~D~~~~~~----~~~~~~~~~~  148 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKNVQ----EVINFLAEKF  148 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSCHH----HHHHHHHHHH
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH---cCCCEEEEEeeeehhhhHH----HHHHHHHHHh
Confidence            34456789999999997653322211          12222222   3789999999999754221    1122222222


Q ss_pred             C-------CeEEEEecCCCCCHHHHHHHHHHHHHH
Q 027949          152 G-------IKFFETSAKTNLNVEEVFFSIARDIKQ  179 (216)
Q Consensus       152 ~-------~~~~~~Sa~~~~gi~~l~~~l~~~i~~  179 (216)
                      .       ..++++||++|.|+++|+++|.+.+.+
T Consensus       149 ~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         149 EVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             TCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence            2       358899999999999999999988875

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=1.3e-22  Score=144.10  Aligned_cols=148  Identities=24%  Similarity=0.223  Sum_probs=102.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCccccc---------ccccccc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR---------TITTAYY   85 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~   85 (216)
                      +||+|+|.+|||||||+|+|++.... ....++.+.......+...+  ..+.+||+||.....         ......+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            68999999999999999999987643 33444555555556667777  678899999943211         0112235


Q ss_pred             ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCC
Q 027949           86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN  165 (216)
Q Consensus        86 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  165 (216)
                      ..+|++++|+|++++.......-+. .+     ...++++++||.|+.+.   ...++.... ...+.+++++||++|+|
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~~~-~~-----~~~~~i~~~~k~d~~~~---~~~~~~~~~-~~~~~~~~~vSA~~g~g  148 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKILE-RI-----KNKRYLVVINKVDVVEK---INEEEIKNK-LGTDRHMVKISALKGEG  148 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHHHH-HH-----TTSSEEEEEEECSSCCC---CCHHHHHHH-HTCSTTEEEEEGGGTCC
T ss_pred             HhCCEEEEEEeCCCCcchhhhhhhh-hc-----ccccceeeeeeccccch---hhhHHHHHH-hCCCCcEEEEECCCCCC
Confidence            6799999999999876544432221 11     25789999999998642   222222221 12346899999999999


Q ss_pred             HHHHHHHHHH
Q 027949          166 VEEVFFSIAR  175 (216)
Q Consensus       166 i~~l~~~l~~  175 (216)
                      +++|+++|.+
T Consensus       149 i~~L~~~I~k  158 (160)
T d1xzpa2         149 LEKLEESIYR  158 (160)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998865

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.86  E-value=9e-22  Score=147.55  Aligned_cols=162  Identities=19%  Similarity=0.153  Sum_probs=102.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEE----------------EECCeEEEEEEEeCCCcccccccc
Q 027949           18 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTI----------------ELDGKRIKLQIWDTAGQERFRTIT   81 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~i~D~~G~~~~~~~~   81 (216)
                      |+|+|.+++|||||+++|++.........+.+........                .+......+.++||||+..|....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            9999999999999999998753221111111111111111                111122568899999999888877


Q ss_pred             ccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccCh-------------------H
Q 027949           82 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPT-------------------S  142 (216)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~-------------------~  142 (216)
                      ...+..+|++|+|+|+.+.-.... ...+..+...   +.|++||+||+|+.+.......                   .
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~---~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  163 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKPQT-QEALNILRMY---RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDT  163 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHHHT---TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHH
T ss_pred             hhcccccceEEEEEecccCcccch-hHHHHHhhcC---CCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHHH
Confidence            778889999999999987533222 2333333333   6899999999998654322110                   0


Q ss_pred             HHHHHHH---Hh---------------CCeEEEEecCCCCCHHHHHHHHHHHHHHHhhc
Q 027949          143 KGQALAD---EY---------------GIKFFETSAKTNLNVEEVFFSIARDIKQRLAD  183 (216)
Q Consensus       143 ~~~~~~~---~~---------------~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~  183 (216)
                      .......   ..               .++++++||.+|.|+++|++.|.....+..++
T Consensus       164 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~~~~  222 (227)
T d1g7sa4         164 KVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLRE  222 (227)
T ss_dssp             HHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSG
T ss_pred             HHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            0111111   00               14789999999999999999988877655443

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.85  E-value=1.1e-20  Score=138.39  Aligned_cols=157  Identities=15%  Similarity=0.120  Sum_probs=92.4

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccc----------c---
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF----------R---   78 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----------~---   78 (216)
                      .+...+|+|+|.+|||||||+|+|++...........+............   .+.+.|++|....          .   
T Consensus        20 ~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~   96 (195)
T d1svia_          20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI   96 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhhhHH
Confidence            44456899999999999999999998654222222222222222223332   2334566652211          1   


Q ss_pred             cccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH----hCCe
Q 027949           79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADE----YGIK  154 (216)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~  154 (216)
                      ......+..++++++++|+..+.. .....++..+...   +.|+++|+||+|+.+..  ...+....+...    ...+
T Consensus        97 ~~~~~~~~~~~~vi~viD~~~~~~-~~~~~~~~~l~~~---~~piivv~NK~D~~~~~--~~~~~~~~~~~~l~~~~~~~  170 (195)
T d1svia_          97 ETYITTREELKAVVQIVDLRHAPS-NDDVQMYEFLKYY---GIPVIVIATKADKIPKG--KWDKHAKVVRQTLNIDPEDE  170 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHHHT---TCCEEEEEECGGGSCGG--GHHHHHHHHHHHHTCCTTSE
T ss_pred             hhhhccccchhhhhhhhhcccccc-ccccccccccccc---cCcceechhhccccCHH--HHHHHHHHHHHHhcccCCCC
Confidence            112233456799999999976533 1223344444433   68999999999975321  122223333333    2368


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHH
Q 027949          155 FFETSAKTNLNVEEVFFSIARDI  177 (216)
Q Consensus       155 ~~~~Sa~~~~gi~~l~~~l~~~i  177 (216)
                      ++.+||++|.|+++++++|.+.+
T Consensus       171 ~~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         171 LILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHh
Confidence            99999999999999999998876

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.85  E-value=5.8e-22  Score=144.02  Aligned_cols=156  Identities=20%  Similarity=0.178  Sum_probs=100.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccc----ccc---ccccccc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT----ITT---AYYRGAM   89 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----~~~---~~~~~~d   89 (216)
                      +|+|+|.+|||||||+|+|++........+..+.........+.+. ..+.+|||||......    ...   ..+..++
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~-~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR   81 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCC-cEEEEecCCCcccCchHHHHHHHHHHHHHHHhh
Confidence            6899999999999999999987765444444444444444444321 4678999999632211    112   2235678


Q ss_pred             EEEEEEeCCCHhHHHHHHH-----HHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh--CCeEEEEecCC
Q 027949           90 GILLVYDVTDESSFNNIRN-----WIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEY--GIKFFETSAKT  162 (216)
Q Consensus        90 ~~i~v~d~~~~~~~~~~~~-----~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~  162 (216)
                      .++++++............     ...........++|+++|+||+|+.+.     .+....+....  +.+++.+||++
T Consensus        82 ~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~-----~~~~~~~~~~~~~~~~v~~iSA~~  156 (185)
T d1lnza2          82 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA-----AENLEAFKEKLTDDYPVFPISAVT  156 (185)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH-----HHHHHHHHHHCCSCCCBCCCSSCC
T ss_pred             hhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhH-----HHHHHHHHHHhccCCcEEEEECCC
Confidence            8888887665432222111     111111122236899999999998642     12333344433  57899999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 027949          163 NLNVEEVFFSIARDIK  178 (216)
Q Consensus       163 ~~gi~~l~~~l~~~i~  178 (216)
                      |.|+++|+++|.+.+.
T Consensus       157 g~Gi~~L~~~i~~~L~  172 (185)
T d1lnza2         157 REGLRELLFEVANQLE  172 (185)
T ss_dssp             SSTTHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHhhh
Confidence            9999999999988763

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.84  E-value=1.2e-20  Score=140.77  Aligned_cols=160  Identities=18%  Similarity=0.180  Sum_probs=115.6

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccccccccccccccEEEE
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   93 (216)
                      ...||+++|..|||||||++++....    ..||.|  .....+.+++  +.+.+||++|+..++..|..++..++++++
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~----~~pTiG--~~~~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~   76 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILH----VVLTSG--IFETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIF   76 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHH----CCCCCS--CEEEEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEEE
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCC----cCCCCC--eEEEEEEECc--EEEEEEecCccceeccchhhhcccccceEE
Confidence            45899999999999999999997554    345666  3445566777  789999999999999999999999999999


Q ss_pred             EEeCCCHh----------HHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCCCC-------------------------
Q 027949           94 VYDVTDES----------SFNNIRN-WIRNIEQHASDNVNKILVGNKADMDESKR-------------------------  137 (216)
Q Consensus        94 v~d~~~~~----------~~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-------------------------  137 (216)
                      ++|.++..          .+.+... |...+......+.|++|++||+|+.++..                         
T Consensus        77 v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~  156 (221)
T d1azta2          77 VVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATP  156 (221)
T ss_dssp             EEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCC
T ss_pred             EEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccc
Confidence            99998642          2333333 43444444445799999999999832110                         


Q ss_pred             ----ccChHHHHHH-----HHHh--------CCeEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 027949          138 ----AVPTSKGQAL-----ADEY--------GIKFFETSAKTNLNVEEVFFSIARDIKQRL  181 (216)
Q Consensus       138 ----~~~~~~~~~~-----~~~~--------~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  181 (216)
                          ......+..+     .+.+        .+-.++|||.++.+|+.+|+.+.+.|++..
T Consensus       157 ~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~~  217 (221)
T d1azta2         157 EPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMH  217 (221)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             cCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHHH
Confidence                0012222222     2211        134568999999999999999998888764

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.84  E-value=2.1e-20  Score=136.85  Aligned_cols=163  Identities=17%  Similarity=0.143  Sum_probs=105.0

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCC---ccccceeeeE--EEEEEEE-------------------CCeEEEEEE
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTT---SFITTIGIDF--KIRTIEL-------------------DGKRIKLQI   68 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~---~~~~~~~~~~--~~~~~~~-------------------~~~~~~~~i   68 (216)
                      ...++|+++|..++|||||+++|++.....   ....+.+.+.  .......                   ......+.+
T Consensus         3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (195)
T d1kk1a3           3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   82 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence            456899999999999999999998743221   1111111111  1111110                   112356899


Q ss_pred             EeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cChHHHHHH
Q 027949           69 WDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA-VPTSKGQAL  147 (216)
Q Consensus        69 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~  147 (216)
                      +|+||+..|.......+..+|++++|+|+.+........+.+..+....  ..++++++||+|+.+.... ........+
T Consensus        83 iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~--~~~iiv~inK~D~~d~~~~~~~~~~~~~~  160 (195)
T d1kk1a3          83 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKIELVDKEKALENYRQIKEF  160 (195)
T ss_dssp             EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred             eccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhc--CccceeeeecccchhhHHHHHHHHHHHHH
Confidence            9999999888877777889999999999987632233333333333332  2457888999998653211 112233334


Q ss_pred             HHHhC---CeEEEEecCCCCCHHHHHHHHHHHH
Q 027949          148 ADEYG---IKFFETSAKTNLNVEEVFFSIARDI  177 (216)
Q Consensus       148 ~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~i  177 (216)
                      ....+   ++++++||++|+|+++|++.|.+.+
T Consensus       161 ~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         161 IEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             hccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            43332   6899999999999999999887754

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=7.6e-20  Score=134.99  Aligned_cols=116  Identities=17%  Similarity=0.328  Sum_probs=84.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEE-CCeEEEEEEEeCCCccccc-cccccccccccEEEEE
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFR-TITTAYYRGAMGILLV   94 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~i~v   94 (216)
                      +|+|+|++|||||||+++|++..+.... ++.+....  .+.+ ++..+.+.+||++|++.+. ..+..++..++++++|
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~--~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v   78 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFV   78 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEE--EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEE--EEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceE
Confidence            6899999999999999999998876543 44443333  3333 3445789999999998775 4567788999999999


Q ss_pred             EeCCCHhHH-HHHHHHHHHH-HH--hcCCCCcEEEEEeCCCCCCC
Q 027949           95 YDVTDESSF-NNIRNWIRNI-EQ--HASDNVNKILVGNKADMDES  135 (216)
Q Consensus        95 ~d~~~~~~~-~~~~~~~~~~-~~--~~~~~~p~ivv~nK~Dl~~~  135 (216)
                      +|+++...+ .....++..+ ..  ......|++||+||+|++++
T Consensus        79 ~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1          79 VDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             EETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             EEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCC
Confidence            999997654 4444444333 22  22346899999999999754

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.81  E-value=8.2e-20  Score=133.34  Aligned_cols=158  Identities=16%  Similarity=0.097  Sum_probs=107.6

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcC----------------CCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccc
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDG----------------SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF   77 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   77 (216)
                      +.++|+++|..++|||||+++|+..                ....+...+.+.+.....+.+.+  ..+.++|+||+..|
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~--~~~~~iDtPGh~~f   79 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA--RHYAHTDCPGHADY   79 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSS--CEEEEEECSSHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEece--eeEEeecCcchHHH
Confidence            3489999999999999999999751                11223334455555555555555  67888999999988


Q ss_pred             ccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc--ChHHHHHHHHHhC---
Q 027949           78 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAV--PTSKGQALADEYG---  152 (216)
Q Consensus        78 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~---  152 (216)
                      -......+..+|++|+|+|+.+...-+ .++.+..+....  ..|++|++||+|+.+.....  ...+++.+....+   
T Consensus        80 ~~~~~~~~~~aD~allVVda~~G~~~Q-T~~~~~~a~~~~--~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~  156 (196)
T d1d2ea3          80 VKNMITGTAPLDGCILVVAANDGPMPQ-TREHLLLARQIG--VEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG  156 (196)
T ss_dssp             HHHHHHTSSCCSEEEEEEETTTCSCHH-HHHHHHHHHHTT--CCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHhhcCeEEEEEEcCCCCchh-HHHHHHHHHHhc--CCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCc
Confidence            877777788999999999998754322 233233333332  35788899999986422211  1224555555444   


Q ss_pred             --CeEEEEecCCC----------CCHHHHHHHHHHH
Q 027949          153 --IKFFETSAKTN----------LNVEEVFFSIARD  176 (216)
Q Consensus       153 --~~~~~~Sa~~~----------~gi~~l~~~l~~~  176 (216)
                        ++++++||++|          +++.+|++.|.+.
T Consensus       157 ~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~  192 (196)
T d1d2ea3         157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY  192 (196)
T ss_dssp             TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred             ccCEEEEEEccccccccCcccccCCHHHHHHHHHhh
Confidence              67999999988          4777777766543

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=6e-19  Score=127.02  Aligned_cols=158  Identities=18%  Similarity=0.169  Sum_probs=102.6

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCCCc-cccceeeeEEEEEEEECCeEEEEEEEeCCCccc---------ccccc
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTS-FITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---------FRTIT   81 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~   81 (216)
                      +.|.-.|+|+|.+|||||||+|+|++...... ..++.+..........+.  ..+..||++|...         +....
T Consensus         2 ~~~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (179)
T d1egaa1           2 KSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAA   79 (179)
T ss_dssp             CCEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCT
T ss_pred             CccccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCC--ceeEeecCCCceecchhhhhhhhhhcc
Confidence            45777899999999999999999998775422 233333333333444444  4556678887422         12223


Q ss_pred             ccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEec
Q 027949           82 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSA  160 (216)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa  160 (216)
                      ......+++++++.|..+.....  ..+...+..   ...|.++|+||.|+.... .........+...++ .+++++||
T Consensus        80 ~~~~~~~~~~l~~~d~~~~~~~~--~~~~~~l~~---~~~~~i~v~~k~d~~~~~-~~~~~~~~~~~~~~~~~~~~~vSA  153 (179)
T d1egaa1          80 SSSIGDVELVIFVVEGTRWTPDD--EMVLNKLRE---GKAPVILAVNKVDNVQEK-ADLLPHLQFLASQMNFLDIVPISA  153 (179)
T ss_dssp             TSCCCCEEEEEEEEETTCCCHHH--HHHHHHHHS---SSSCEEEEEESTTTCCCH-HHHHHHHHHHHTTSCCSEEEECCT
T ss_pred             ccchhhcceeEEEEecCccchhH--HHHHHHhhh---ccCceeeeeeeeeccchh-hhhhhHhhhhhhhcCCCCEEEEeC
Confidence            33445678888899987643222  222222322   357899999999976532 223344455555555 58999999


Q ss_pred             CCCCCHHHHHHHHHHHH
Q 027949          161 KTNLNVEEVFFSIARDI  177 (216)
Q Consensus       161 ~~~~gi~~l~~~l~~~i  177 (216)
                      ++|+|+++|+++|.+++
T Consensus       154 ~~g~gi~~L~~~i~~~l  170 (179)
T d1egaa1         154 ETGLNVDTIAAIVRKHL  170 (179)
T ss_dssp             TTTTTHHHHHHHHHTTC
T ss_pred             cCCCCHHHHHHHHHHhC
Confidence            99999999999987765

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.80  E-value=4e-19  Score=130.94  Aligned_cols=162  Identities=15%  Similarity=0.162  Sum_probs=99.9

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCc---ccccee--eeEEEEEEEE------------------------CCeEE
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTS---FITTIG--IDFKIRTIEL------------------------DGKRI   64 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~---~~~~~~--~~~~~~~~~~------------------------~~~~~   64 (216)
                      +.++|+++|..++|||||+++|++......   ......  .......+..                        .....
T Consensus         7 p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r   86 (205)
T d2qn6a3           7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLR   86 (205)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEE
T ss_pred             CCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccceE
Confidence            448999999999999999999986322100   000000  0000011000                        11224


Q ss_pred             EEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccC-hHH
Q 027949           65 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVP-TSK  143 (216)
Q Consensus        65 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~  143 (216)
                      .+.++|+||+..|-......+..+|++|+|+|+.+.-.....+.-+..+....  -.|++|++||+|+.+...... ...
T Consensus        87 ~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~--i~~iIV~vNK~Dl~~~~~~~~~~~~  164 (205)
T d2qn6a3          87 RISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQ  164 (205)
T ss_dssp             EEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTT--CCCEEEEEECGGGSCHHHHHHHHHH
T ss_pred             EEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcC--CceeeeccccCCCccchHHHHHHHH
Confidence            68899999999887777777788999999999987521122222222222221  358888999999865322111 122


Q ss_pred             HHHHHHHh---CCeEEEEecCCCCCHHHHHHHHHHHH
Q 027949          144 GQALADEY---GIKFFETSAKTNLNVEEVFFSIARDI  177 (216)
Q Consensus       144 ~~~~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~i  177 (216)
                      ...+....   .++++++||++|.|++++++.|.+.+
T Consensus       165 ~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~i  201 (205)
T d2qn6a3         165 IKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  201 (205)
T ss_dssp             HHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhC
Confidence            23333222   27899999999999999999887653

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.75  E-value=1.1e-18  Score=128.15  Aligned_cols=142  Identities=17%  Similarity=0.111  Sum_probs=96.4

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcC--------CC---------CCccccceeeeEEEEEEEECCeEEEEEEEeCCCccc
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDG--------SF---------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER   76 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~--------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   76 (216)
                      +.++|+++|..++|||||+++|+..        .+         +.+...+.+.+.....+.+++  ..+.|+||||+..
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~--~~i~iiDtPGh~d   79 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGHAD   79 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCSGG
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCC--eEEEEEeCCCchh
Confidence            3589999999999999999999631        00         111223455666667777877  6778899999998


Q ss_pred             cccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCcc--ChHHHHHHHHHhC-
Q 027949           77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KILVGNKADMDESKRAV--PTSKGQALADEYG-  152 (216)
Q Consensus        77 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~-  152 (216)
                      |-......+..+|++|+|+|+.+.......+-| ..+...   +.| ++|++||+|+.+.....  ..++++.+....+ 
T Consensus        80 f~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~-~~~~~~---gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~  155 (204)
T d2c78a3          80 YIKNMITGAAQMDGAILVVSAADGPMPQTREHI-LLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF  155 (204)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHH-HHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred             hHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHH-HHHHHc---CCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCC
Confidence            888777788899999999999886554443333 233332   555 67779999986532211  1233444444433 


Q ss_pred             ----CeEEEEecC
Q 027949          153 ----IKFFETSAK  161 (216)
Q Consensus       153 ----~~~~~~Sa~  161 (216)
                          ++++..|+.
T Consensus       156 ~~~~i~~i~~sa~  168 (204)
T d2c78a3         156 PGDEVPVIRGSAL  168 (204)
T ss_dssp             CTTTSCEEECCHH
T ss_pred             Ccccceeeeeech
Confidence                578888875

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.74  E-value=1.2e-17  Score=123.92  Aligned_cols=153  Identities=19%  Similarity=0.160  Sum_probs=99.6

Q ss_pred             CCCCceEEEEEEcCCCCcHHHHHHHHHcCC--CC-------------------------------CccccceeeeEEEEE
Q 027949           10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGS--FT-------------------------------TSFITTIGIDFKIRT   56 (216)
Q Consensus        10 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~--~~-------------------------------~~~~~~~~~~~~~~~   56 (216)
                      .+.+..++|+++|..++|||||+++|+...  +.                               .+...+.+.+.....
T Consensus         4 ~~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~   83 (222)
T d1zunb3           4 HERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRY   83 (222)
T ss_dssp             TTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEE
T ss_pred             cccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEE
Confidence            345677999999999999999999996411  00                               011122333333444


Q ss_pred             EEECCeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCC-cEEEEEeCCCCCCC
Q 027949           57 IELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNV-NKILVGNKADMDES  135 (216)
Q Consensus        57 ~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~~~  135 (216)
                      +...+  ..+.++|+||+..|-.........+|++|+|+|+.+...-+.. .-+..+...   ++ .+++++||+|+.+.
T Consensus        84 ~~~~~--~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~-e~~~~~~~~---gv~~iiv~vNK~D~~~~  157 (222)
T d1zunb3          84 FSTAK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR-RHSYIASLL---GIKHIVVAINKMDLNGF  157 (222)
T ss_dssp             EECSS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH-HHHHHHHHT---TCCEEEEEEECTTTTTS
T ss_pred             Eeccc--eEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchH-HHHHHHHHc---CCCEEEEEEEccccccc
Confidence            44555  6788999999999888777778899999999999875432322 222222222   44 47888999998753


Q ss_pred             CCccC---hHHHHHHHHHhC-----CeEEEEecCCCCCHHH
Q 027949          136 KRAVP---TSKGQALADEYG-----IKFFETSAKTNLNVEE  168 (216)
Q Consensus       136 ~~~~~---~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~  168 (216)
                      .....   ..++..+....+     ++++++||.+|+|+.+
T Consensus       158 ~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         158 DERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             cceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence            32222   223444555543     4789999999998743

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=3.3e-18  Score=126.01  Aligned_cols=116  Identities=17%  Similarity=0.335  Sum_probs=82.3

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccccccc----cccc
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY----RGAM   89 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~----~~~d   89 (216)
                      |..+|+|+|.+|||||||+|+|++.++.    ++.+.+.....+..++  ..+.+||+||+..+...+..++    ..++
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~----~~tt~~~~~~~~~~~~--~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~   75 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVR----PTVVSQEPLSAADYDG--SGVTLVDFPGHVKLRYKLSDYLKTRAKFVK   75 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCC----CBCCCSSCEEETTGGG--SSCEEEECCCCGGGTHHHHHHHHHHGGGEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEecceEEEEEeCC--eEEEEEecccccchhhHHHHHHHHHhhhcc
Confidence            4568999999999999999999998754    3333344444455555  6788999999887666554443    4458


Q ss_pred             EEEEEEeCCC-HhHHHHHHHHH----HHHHHhcCCCCcEEEEEeCCCCCCC
Q 027949           90 GILLVYDVTD-ESSFNNIRNWI----RNIEQHASDNVNKILVGNKADMDES  135 (216)
Q Consensus        90 ~~i~v~d~~~-~~~~~~~~~~~----~~~~~~~~~~~p~ivv~nK~Dl~~~  135 (216)
                      .+++++|+.+ ..++.....|+    ..+......+.|+++|+||+|+.+.
T Consensus        76 ~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          76 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             EEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             ccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence            8888888764 44445554443    3344455568999999999998653

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=7.7e-18  Score=121.67  Aligned_cols=163  Identities=15%  Similarity=0.085  Sum_probs=85.2

Q ss_pred             CCCCCceEEEEEEcCCCCcHHHHHHHHHcCCCCCcccccee-eeEEEEEEEECCeEEEEEEEeCCC-ccccc-------c
Q 027949            9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIG-IDFKIRTIELDGKRIKLQIWDTAG-QERFR-------T   79 (216)
Q Consensus         9 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~G-~~~~~-------~   79 (216)
                      ..+.+..++|+++|.+|||||||+|+|++...........+ ...........+  ......+.++ .....       .
T Consensus        10 ~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   87 (188)
T d1puia_          10 HLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADG--KRLVDLPGYGYAEVPEEMKRKWQR   87 (188)
T ss_dssp             GSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETT--EEEEECCCCC------CCHHHHHH
T ss_pred             HCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccc--cceeeeecccccchhhhhhhhhhh
Confidence            34466779999999999999999999998765432222222 222222222333  2222223222 11100       0


Q ss_pred             c---cccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cChHHHHHHHHHhC--C
Q 027949           80 I---TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA-VPTSKGQALADEYG--I  153 (216)
Q Consensus        80 ~---~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~--~  153 (216)
                      .   ........+.++.+.+......... ..++..+...   ..++++++||+|+.+.... ...+...+......  .
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~  163 (188)
T d1puia_          88 ALGEYLEKRQSLQGLVVLMDIRHPLKDLD-QQMIEWAVDS---NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV  163 (188)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHHT---TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred             hhhhhhhhhhheeEEEEeecccccchhHH-HHHHHHhhhc---cccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCC
Confidence            1   1111223445666666655433222 2333333332   6789999999997542111 11122222222232  5


Q ss_pred             eEEEEecCCCCCHHHHHHHHHHHH
Q 027949          154 KFFETSAKTNLNVEEVFFSIARDI  177 (216)
Q Consensus       154 ~~~~~Sa~~~~gi~~l~~~l~~~i  177 (216)
                      +++.+||++|.|+++|+++|.+.+
T Consensus       164 ~~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         164 QVETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             cEEEEeCCCCCCHHHHHHHHHHHh
Confidence            899999999999999999987654

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.70  E-value=2.2e-16  Score=120.14  Aligned_cols=112  Identities=19%  Similarity=0.199  Sum_probs=83.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC--C----------------CCccccceeeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS--F----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR   78 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   78 (216)
                      +|+++|..|+|||||+.+++...  .                ..+.....++......+.+++  ..++|+||||+..|-
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~--~~~n~iDtPG~~dF~   85 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDAPGHVDFT   85 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETT--EEEEEECCCSSSSCS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCC--eEEEEecCCchhhhH
Confidence            69999999999999999996411  0                012223344555567788888  678999999999999


Q ss_pred             cccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949           79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE  134 (216)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (216)
                      ......++-+|++|+|+|+.+.-......-|. ....   .+.|.++++||+|...
T Consensus        86 ~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~-~a~~---~~lP~i~fINKmDr~~  137 (276)
T d2bv3a2          86 IEVERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAEK---YKVPRIAFANKMDKTG  137 (276)
T ss_dssp             TTHHHHHHHCCEEEEEEETTTSSCHHHHHHHH-HHHT---TTCCEEEEEECTTSTT
T ss_pred             HHHHHHHHhhhheEEeccccCCcchhHHHHHH-HHHH---cCCCEEEEEecccccc
Confidence            88888899999999999999875544444443 3333   3799999999999743

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.66  E-value=9.6e-17  Score=120.32  Aligned_cols=150  Identities=17%  Similarity=0.109  Sum_probs=103.7

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcC--CC-----------------------------CCccccceeeeEEEEEEEECCe
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDG--SF-----------------------------TTSFITTIGIDFKIRTIELDGK   62 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~   62 (216)
                      ..++|+++|..++|||||+.+|+..  .+                             ..+...+.+.+.....+.+.+ 
T Consensus         5 ~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~-   83 (239)
T d1f60a3           5 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK-   83 (239)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS-
T ss_pred             CccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC-
Confidence            4589999999999999999999631  00                             012335566666677777877 


Q ss_pred             EEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHH------HHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCC
Q 027949           63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF------NNIRNWIRNIEQHASDNVN-KILVGNKADMDES  135 (216)
Q Consensus        63 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~  135 (216)
                       ++++|+|+||+..|-.....-+..+|++|+|+|+.....-      .+...-+..+...   ++| ++|++||+|+.+.
T Consensus        84 -~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~---gv~~iiv~iNKmD~~~~  159 (239)
T d1f60a3          84 -YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL---GVRQLIVAVNKMDSVKW  159 (239)
T ss_dssp             -EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT---TCCEEEEEEECGGGGTT
T ss_pred             -EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHc---CCCeEEEEEECCCCCCC
Confidence             7889999999999988888888999999999999865211      1222222222222   454 7788999998653


Q ss_pred             CCcc---ChHHHHHHHHHhC-----CeEEEEecCCCCCHHH
Q 027949          136 KRAV---PTSKGQALADEYG-----IKFFETSAKTNLNVEE  168 (216)
Q Consensus       136 ~~~~---~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~  168 (216)
                      ....   ...++..+....+     ++++.+|+..|.|+-+
T Consensus       160 d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         160 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            3221   2234455555544     6789999999988644

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.66  E-value=7.8e-16  Score=116.74  Aligned_cols=110  Identities=16%  Similarity=0.234  Sum_probs=83.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC--C----------------CccccceeeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSF--T----------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR   78 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   78 (216)
                      +|+|+|..++|||||+.+|+...-  .                .+.....+.......+.+++  ..++++||||+..|.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~--~~~n~iDtPGh~dF~   81 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYGDFV   81 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSGGGH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc--cceeEEccCchhhhh
Confidence            589999999999999999964210  0                01123345566667788888  678899999999998


Q ss_pred             cccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 027949           79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADM  132 (216)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  132 (216)
                      ......++-+|++|+|+|+.+.-.......|. .+...   +.|.++++||+|.
T Consensus        82 ~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~-~~~~~---~~p~~i~iNk~D~  131 (267)
T d2dy1a2          82 GEIRGALEAADAALVAVSAEAGVQVGTERAWT-VAERL---GLPRMVVVTKLDK  131 (267)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHHT---TCCEEEEEECGGG
T ss_pred             hhhhhhhcccCceEEEeeccCCccchhHHHHH-hhhhc---ccccccccccccc
Confidence            88888889999999999998765544444443 33333   6899999999996

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.64  E-value=4.2e-16  Score=117.30  Aligned_cols=154  Identities=16%  Similarity=0.088  Sum_probs=85.1

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCC-------------------------------CCccccceeeeEEEEEEEEC
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSF-------------------------------TTSFITTIGIDFKIRTIELD   60 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   60 (216)
                      ....++|+++|..++|||||+.+|+...-                               ..+...+.+.+.....+.++
T Consensus        21 ~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~  100 (245)
T d1r5ba3          21 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE  100 (245)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred             CCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccc
Confidence            34568999999999999999999953110                               01111222223333344445


Q ss_pred             CeEEEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHH------HHHHHHHHHHHhcCCCC-cEEEEEeCCCCC
Q 027949           61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN------NIRNWIRNIEQHASDNV-NKILVGNKADMD  133 (216)
Q Consensus        61 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~------~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~  133 (216)
                      +  ..+.+.|+||+..|-.........+|++++|+|+.+...-.      +....+..+...   +. ++++++||+|++
T Consensus       101 ~--~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~---~i~~iiv~iNKmD~~  175 (245)
T d1r5ba3         101 H--RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ---GINHLVVVINKMDEP  175 (245)
T ss_dssp             S--EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT---TCSSEEEEEECTTST
T ss_pred             c--ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc---CCCeEEEEEEcCCCC
Confidence            5  57889999999999888888888999999999998742110      122222222222   34 477889999986


Q ss_pred             CCCCcc-----ChHHHHHHHHHh-------CCeEEEEecCCCCCHHHHH
Q 027949          134 ESKRAV-----PTSKGQALADEY-------GIKFFETSAKTNLNVEEVF  170 (216)
Q Consensus       134 ~~~~~~-----~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi~~l~  170 (216)
                      ......     ..+++..+....       .++++++||++|+||.+++
T Consensus       176 ~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~  224 (245)
T d1r5ba3         176 SVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  224 (245)
T ss_dssp             TCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence            432211     112233333322       2589999999999997754

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.63  E-value=4.8e-16  Score=115.69  Aligned_cols=150  Identities=19%  Similarity=0.192  Sum_probs=93.4

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCC-------------------------------CCccccceeeeEEEEEEEECCeE
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSF-------------------------------TTSFITTIGIDFKIRTIELDGKR   63 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~   63 (216)
                      .++|+|+|..++|||||+.+|+...-                               ..+...+.+.......+++++  
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~--   80 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK--   80 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS--
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCC--
Confidence            58999999999999999999853110                               011223333344444555555  


Q ss_pred             EEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHH------HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027949           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF------NNIRNWIRNIEQHASDNVNKILVGNKADMDESKR  137 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  137 (216)
                      +.+.|+|+||+..|-......++-+|++|+|+|+.+...-      ....+-+..+. .. ...++++++||+|+.....
T Consensus        81 ~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~-~~-~~~~iIv~iNK~D~~~~~~  158 (224)
T d1jnya3          81 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAK-TM-GLDQLIVAVNKMDLTEPPY  158 (224)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHH-HT-TCTTCEEEEECGGGSSSTT
T ss_pred             ceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHH-Hh-CCCceEEEEEcccCCCccc
Confidence            6789999999999998888888999999999999875321      12222111111 11 1346888899999864222


Q ss_pred             cc-----ChHHHHHHHHHhC-----CeEEEEecCCCCCHHH
Q 027949          138 AV-----PTSKGQALADEYG-----IKFFETSAKTNLNVEE  168 (216)
Q Consensus       138 ~~-----~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~  168 (216)
                      ..     ....+..+...++     ++++++||..|.|+.+
T Consensus       159 ~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         159 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             cHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            11     1122333434433     5789999999998753

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.56  E-value=3.1e-14  Score=107.80  Aligned_cols=120  Identities=18%  Similarity=0.116  Sum_probs=76.9

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCC-ccccceeeeEEEEEEEECCeEEEEEEEeCCCcccccccc-------c--
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT-------T--   82 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-------~--   82 (216)
                      ...++|+|+|.+|+|||||+|.|++..... ...+..+.+........++  ..+.++||||........       .  
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHHHH
Confidence            356999999999999999999999977542 3334445556666667787  678999999964322111       1  


Q ss_pred             cccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCCC
Q 027949           83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD--NVNKILVGNKADMDE  134 (216)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~Dl~~  134 (216)
                      ......|+++||++++...--......+..+...++.  ..+++||+||+|...
T Consensus       108 ~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~  161 (257)
T d1h65a_         108 LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP  161 (257)
T ss_dssp             TTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred             HhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCC
Confidence            1123568899998876542111122222333332221  257899999999754

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=1.6e-14  Score=115.92  Aligned_cols=157  Identities=12%  Similarity=0.120  Sum_probs=90.7

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccc-----cceeeeEEEEEEEECCeEEEEEEEeCCCcccccccc-----ccc
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFI-----TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT-----TAY   84 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-----~~~   84 (216)
                      .++|+|+|.+|+|||||+|+|++........     ...+.+.  ..+...+ ...+.+|||||........     ...
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~--~~~~~~~-~~~~~l~DtPG~~~~~~~~~~~~~~~~  132 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMER--HPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKMK  132 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCC--EEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHTT
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceee--eeeeccC-CCeEEEEeCCCcccccccHHHHHHHhh
Confidence            4899999999999999999999854321111     1112121  1222221 1357899999965433221     223


Q ss_pred             cccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC------CCCccCh----HHHHH----HHHH
Q 027949           85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE------SKRAVPT----SKGQA----LADE  150 (216)
Q Consensus        85 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------~~~~~~~----~~~~~----~~~~  150 (216)
                      +..+|++|++.|..-.+...   .+...+...   +.|+++|.||+|...      .......    +.++.    ....
T Consensus       133 ~~~~d~~l~~~~~~~~~~d~---~l~~~l~~~---~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~  206 (400)
T d1tq4a_         133 FYEYDFFIIISATRFKKNDI---DIAKAISMM---KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE  206 (400)
T ss_dssp             GGGCSEEEEEESSCCCHHHH---HHHHHHHHT---TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhcceEEEEecCCCCCHHHH---HHHHHHHHc---CCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHH
Confidence            45688888888754332222   233344433   689999999999521      0011111    11111    1222


Q ss_pred             hC---CeEEEEecCC--CCCHHHHHHHHHHHHHHH
Q 027949          151 YG---IKFFETSAKT--NLNVEEVFFSIARDIKQR  180 (216)
Q Consensus       151 ~~---~~~~~~Sa~~--~~gi~~l~~~l~~~i~~~  180 (216)
                      .+   .++|.+|..+  ..|+.++.+++.+.+.+.
T Consensus       207 ~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~  241 (400)
T d1tq4a_         207 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  241 (400)
T ss_dssp             TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             cCCCCCCEEEecCCcccccCHHHHHHHHHHHhHHH
Confidence            33   3688888765  458999988888776553

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=8.1e-14  Score=108.90  Aligned_cols=115  Identities=20%  Similarity=0.236  Sum_probs=79.8

Q ss_pred             E-EEEEEcCCCCcHHHHHHHHHcCC--C--------------CCccccceeeeEEEEEEEE--------------CCeEE
Q 027949           16 I-KLLLIGDSGVGKSCLLLRFSDGS--F--------------TTSFITTIGIDFKIRTIEL--------------DGKRI   64 (216)
Q Consensus        16 ~-~i~v~G~~~~GKStli~~l~~~~--~--------------~~~~~~~~~~~~~~~~~~~--------------~~~~~   64 (216)
                      + +|+|+|..++|||||+.+|+...  .              ..+...+.+.......+.+              ++..+
T Consensus        17 IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~   96 (341)
T d1n0ua2          17 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF   96 (341)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccce
Confidence            6 59999999999999999996311  0              0111122222222333322              33457


Q ss_pred             EEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949           65 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE  134 (216)
Q Consensus        65 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (216)
                      .++++||||+..|.......++-+|++|+|+|+.+.-......-|..... .   +.|+++++||+|...
T Consensus        97 ~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~-~---~~p~i~viNKiDr~~  162 (341)
T d1n0ua2          97 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG-E---RIKPVVVINKVDRAL  162 (341)
T ss_dssp             EEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH-T---TCEEEEEEECHHHHH
T ss_pred             EEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHH-c---CCCeEEEEECccccc
Confidence            89999999999999888888899999999999998765555444444332 2   689999999999643

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.45  E-value=2.1e-14  Score=107.63  Aligned_cols=113  Identities=15%  Similarity=0.042  Sum_probs=66.2

Q ss_pred             EEEEEEeCCCcccccccccc---c--cccccEEEEEEeCC---CHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027949           64 IKLQIWDTAGQERFRTITTA---Y--YRGAMGILLVYDVT---DESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES  135 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~---~--~~~~d~~i~v~d~~---~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~  135 (216)
                      ..+.+.|+||+..+......   +  ....+.+++++|+.   ++..+.........+...  ...|.++|+||+|+...
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~--~~~~~ivvinK~D~~~~  172 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLSE  172 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCCH
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH--hCCCceeeeeccccccH
Confidence            35788899998654322111   1  12456888999875   344433332222222222  26899999999998653


Q ss_pred             CCccC----------------------hHHHHHH---HHH--hCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 027949          136 KRAVP----------------------TSKGQAL---ADE--YGIKFFETSAKTNLNVEEVFFSIARDIK  178 (216)
Q Consensus       136 ~~~~~----------------------~~~~~~~---~~~--~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  178 (216)
                      .....                      ......+   ...  ..++++++||++|+|+++|+.+|.+++-
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~~  242 (244)
T d1yrba1         173 EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  242 (244)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence            21100                      0000000   111  1368999999999999999999988753

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=4.9e-13  Score=104.14  Aligned_cols=106  Identities=14%  Similarity=0.130  Sum_probs=58.9

Q ss_pred             EEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cChHH
Q 027949           65 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA-VPTSK  143 (216)
Q Consensus        65 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~  143 (216)
                      .+.|++|.|.-..   -..+...+|.+++|.+....+.....+.   .+.+.     +-++|+||+|+...... ....+
T Consensus       148 d~iliEtvG~gq~---e~~i~~~aD~~l~v~~P~~Gd~iq~~k~---gi~e~-----aDi~VvNKaD~~~~~~~~~~~~~  216 (327)
T d2p67a1         148 DVVIVETVGVGQS---ETEVARMVDCFISLQIAGGGDDLQGIKK---GLMEV-----ADLIVINKDDGDNHTNVAIARHM  216 (327)
T ss_dssp             SEEEEEEECCTTH---HHHHHTTCSEEEEEECC------CCCCH---HHHHH-----CSEEEECCCCTTCHHHHHHHHHH
T ss_pred             CeEEEeecccccc---chhhhhccceEEEEecCCCchhhhhhch---hhhcc-----ccEEEEEeecccchHHHHHHHHH
Confidence            3445555553211   1234456899999887655443333323   23332     23889999998542211 11122


Q ss_pred             HHHHHHHh-------CCeEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 027949          144 GQALADEY-------GIKFFETSAKTNLNVEEVFFSIARDIKQRL  181 (216)
Q Consensus       144 ~~~~~~~~-------~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  181 (216)
                      ........       ..+++.|||.+|+|++++++.|.++.....
T Consensus       217 ~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~~l~  261 (327)
T d2p67a1         217 YESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALT  261 (327)
T ss_dssp             HHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHHHHH
Confidence            22222211       147999999999999999999988765543

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.37  E-value=1.1e-12  Score=101.97  Aligned_cols=107  Identities=14%  Similarity=0.119  Sum_probs=64.2

Q ss_pred             EEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHH
Q 027949           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK  143 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~  143 (216)
                      +.+.|++|.|.-....   ....-+|..++|......+..+..+.-   +.+.     +-++|+||+|+.+... .....
T Consensus       144 ~d~iiiETVG~gq~e~---~~~~~~D~~v~v~~p~~GD~iQ~~k~g---ilE~-----aDi~vvNKaD~~~~~~-~~~~~  211 (323)
T d2qm8a1         144 FDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKG---IFEL-----ADMIAVNKADDGDGER-RASAA  211 (323)
T ss_dssp             CCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTT---HHHH-----CSEEEEECCSTTCCHH-HHHHH
T ss_pred             CCeEEEeehhhhhhhh---hhhcccceEEEEeeccchhhhhhhhhh---Hhhh-----hheeeEeccccccchH-HHHHH
Confidence            5677888887643222   233458999999998877654433222   2222     2389999999855322 11111


Q ss_pred             HHHHHHH----------hCCeEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 027949          144 GQALADE----------YGIKFFETSAKTNLNVEEVFFSIARDIKQRLA  182 (216)
Q Consensus       144 ~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  182 (216)
                      ...+...          ...+++.+||.+|.|+++++++|.++.....+
T Consensus       212 ~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~~~~  260 (323)
T d2qm8a1         212 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKLTA  260 (323)
T ss_dssp             HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence            1112211          12589999999999999999999888765433

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.24  E-value=2.8e-11  Score=92.31  Aligned_cols=84  Identities=18%  Similarity=0.182  Sum_probs=58.6

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCe------------E---EEEEEEeCCCcc----
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK------------R---IKLQIWDTAGQE----   75 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~---~~~~i~D~~G~~----   75 (216)
                      .++|.++|.|+||||||++++++........|+.+.+.....+.+.+.            .   ..+.++|.||.-    
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            389999999999999999999998876666677777777777765432            1   257899999942    


Q ss_pred             ccccccccc---cccccEEEEEEeCC
Q 027949           76 RFRTITTAY---YRGAMGILLVYDVT   98 (216)
Q Consensus        76 ~~~~~~~~~---~~~~d~~i~v~d~~   98 (216)
                      +-..+...|   ++++|++++|+|+.
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cCCCccHHHHHHHHhccceEEEeecc
Confidence            222233333   57899999999864

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.23  E-value=6.4e-11  Score=91.10  Aligned_cols=86  Identities=19%  Similarity=0.173  Sum_probs=62.6

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcCCC-CCccccceeeeEEEEEEEECCe---------------EEEEEEEeCCCcccc
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGK---------------RIKLQIWDTAGQERF   77 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~   77 (216)
                      ..++|.++|.|+||||||++++++... .....|+++.+.....+.+.+.               ...+.+.|.||.-.-
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~g   88 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   88 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccccc
Confidence            448999999999999999999998764 3455677777777777765432               247888999984321


Q ss_pred             ----cc---ccccccccccEEEEEEeCCC
Q 027949           78 ----RT---ITTAYYRGAMGILLVYDVTD   99 (216)
Q Consensus        78 ----~~---~~~~~~~~~d~~i~v~d~~~   99 (216)
                          ..   ....-++.+|++|+|+|+.+
T Consensus        89 A~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          89 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccccccHHHHHHHhhccceeEEEEeccC
Confidence                11   23334578999999998855

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.11  E-value=8e-11  Score=91.49  Aligned_cols=84  Identities=18%  Similarity=0.149  Sum_probs=46.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEE----------------------CCeEEEEEEEeCCC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL----------------------DGKRIKLQIWDTAG   73 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~i~D~~G   73 (216)
                      ++|+++|.|+||||||+|+|++.+......|+++.+........                      ......+.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            58999999999999999999998776555566665554443210                      01236789999999


Q ss_pred             ccc-------cccccccccccccEEEEEEeCCC
Q 027949           74 QER-------FRTITTAYYRGAMGILLVYDVTD   99 (216)
Q Consensus        74 ~~~-------~~~~~~~~~~~~d~~i~v~d~~~   99 (216)
                      .-.       ........++.+|++++|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            532       11122334568999999999863

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.04  E-value=9.1e-10  Score=84.56  Aligned_cols=117  Identities=17%  Similarity=0.240  Sum_probs=69.8

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEE----------CC----------------------
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIEL----------DG----------------------   61 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~----------~~----------------------   61 (216)
                      ..+|+|+|..++|||||+|+|++..+. ....+++..-........          .+                      
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence            358999999999999999999998863 323232221111111100          00                      


Q ss_pred             -----------------eEEEEEEEeCCCcccc-------------cccccccccccc-EEEEEEeCCCHhHHHHHHHHH
Q 027949           62 -----------------KRIKLQIWDTAGQERF-------------RTITTAYYRGAM-GILLVYDVTDESSFNNIRNWI  110 (216)
Q Consensus        62 -----------------~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d-~~i~v~d~~~~~~~~~~~~~~  110 (216)
                                       ....+.++|+||....             ..+...|+...+ ++++|.++...-+-.....+.
T Consensus       106 ~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~  185 (299)
T d2akab1         106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA  185 (299)
T ss_dssp             STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHH
T ss_pred             CCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHH
Confidence                             0124788999995321             123344555555 556677776554444444454


Q ss_pred             HHHHHhcCCCCcEEEEEeCCCCCC
Q 027949          111 RNIEQHASDNVNKILVGNKADMDE  134 (216)
Q Consensus       111 ~~~~~~~~~~~p~ivv~nK~Dl~~  134 (216)
                      +.+   .+...++++|+||+|..+
T Consensus       186 ~~~---~~~~~r~i~Vltk~D~~~  206 (299)
T d2akab1         186 KEV---DPQGQRTIGVITKLDLMD  206 (299)
T ss_dssp             HHH---CTTCSSEEEEEECGGGSC
T ss_pred             HHh---CcCCCceeeEEecccccc
Confidence            444   334578999999999754

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.89  E-value=1.9e-09  Score=83.03  Aligned_cols=25  Identities=24%  Similarity=0.496  Sum_probs=23.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCCC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGSF   40 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~~   40 (216)
                      .+|+|+|..++|||||+|+|++..+
T Consensus        25 P~ivVvG~~ssGKSSliNaLlG~~~   49 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIVGRDF   49 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             CeEEEEeCCCCCHHHHHHHHhCCCC
Confidence            5899999999999999999999775

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.56  E-value=3.4e-08  Score=74.66  Aligned_cols=58  Identities=28%  Similarity=0.362  Sum_probs=37.1

Q ss_pred             CCceEEEEEEcCCCCcHHHHHHHHHcCCCC-CccccceeeeEEEEEEEECCeEEEEEEEeCCCc
Q 027949           12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   74 (216)
Q Consensus        12 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   74 (216)
                      ....++|+|+|.||||||||+|+|.+.... ....|+.+.+  ...+..+.   .+.++||||.
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~--~~~i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTS--QQWVKVGK---ELELLDTPGI  167 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCC
T ss_pred             CCCceEEEEEecCccchhhhhhhhhccceEEECCccccccc--ceEEECCC---CeEEecCCCc
Confidence            345699999999999999999999997653 3444555433  33344433   4788999995

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.50  E-value=1.3e-07  Score=68.84  Aligned_cols=85  Identities=24%  Similarity=0.257  Sum_probs=60.5

Q ss_pred             cccccccEEEEEEeCCCHh-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh--CCeEEEEe
Q 027949           83 AYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEY--GIKFFETS  159 (216)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~S  159 (216)
                      ..+.+.|.+++|+++.+|+ +...+.+++-.....   +.|.+||+||+||.+..   ..+....+...+  +.+++.+|
T Consensus         6 P~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~---~i~pvIvlnK~DL~~~~---~~~~~~~~~~~~~~~~~v~~vS   79 (225)
T d1u0la2           6 PHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN---ELETVMVINKMDLYDED---DLRKVRELEEIYSGLYPIVKTS   79 (225)
T ss_dssp             TTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT---TCEEEEEECCGGGCCHH---HHHHHHHHHHHHTTTSCEEECC
T ss_pred             CCcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc---CCCEEEEEeCcccCCHH---HHHHHHHhhcccccceeEEEec
Confidence            3456899999999998875 345566666555544   78999999999996421   222333333332  36899999


Q ss_pred             cCCCCCHHHHHHHH
Q 027949          160 AKTNLNVEEVFFSI  173 (216)
Q Consensus       160 a~~~~gi~~l~~~l  173 (216)
                      ++++.|++++..+|
T Consensus        80 a~~~~g~~~L~~~l   93 (225)
T d1u0la2          80 AKTGMGIEELKEYL   93 (225)
T ss_dssp             TTTCTTHHHHHHHH
T ss_pred             cccchhHhhHHHHh
Confidence            99999999988776

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.35  E-value=8.2e-08  Score=70.10  Aligned_cols=89  Identities=15%  Similarity=0.163  Sum_probs=62.0

Q ss_pred             ccccccccEEEEEEeCCCHh-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cChHHHHHHHHHhCCeEEEEe
Q 027949           82 TAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRA-VPTSKGQALADEYGIKFFETS  159 (216)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~S  159 (216)
                      +..+.+.|.+++|+++.+|+ ++..+.+++-.....   +.+.+||+||+||.+.... ...+.........|.+++.+|
T Consensus         5 RP~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~---~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~S   81 (231)
T d1t9ha2           5 RPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN---DIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTS   81 (231)
T ss_dssp             TTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT---TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECC
T ss_pred             CCCccccCEEEEEEECCCCCCCHHHHHHHHHHHHHc---CCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeee
Confidence            33456899999999998875 455666666555443   7899999999998652211 111223334456689999999


Q ss_pred             cCCCCCHHHHHHHH
Q 027949          160 AKTNLNVEEVFFSI  173 (216)
Q Consensus       160 a~~~~gi~~l~~~l  173 (216)
                      +.++.|++++..+|
T Consensus        82 a~~~~gl~~L~~~l   95 (231)
T d1t9ha2          82 SKDQDSLADIIPHF   95 (231)
T ss_dssp             HHHHTTCTTTGGGG
T ss_pred             cCChhHHHHHHHhh
Confidence            99999988876654

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.34  E-value=4e-06  Score=60.98  Aligned_cols=71  Identities=10%  Similarity=0.142  Sum_probs=40.2

Q ss_pred             ccEEEEEEeCCCHhHHHHHHHHH-HHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC--CeEEEEecCCCC
Q 027949           88 AMGILLVYDVTDESSFNNIRNWI-RNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG--IKFFETSAKTNL  164 (216)
Q Consensus        88 ~d~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~  164 (216)
                      .+.+|.|+|+............+ ..+ ..     .=++|+||+|+.++     .+..+...+.++  +++++++ ....
T Consensus       122 l~~vi~vVDa~~~~~~~~~~~~~~~Qi-~~-----AD~ivlNK~Dl~~~-----~~~~~~~l~~lNP~a~Ii~~~-~g~v  189 (222)
T d1nija1         122 LDGVIALVDAVHADEQMNQFTIAQSQV-GY-----ADRILLTKTDVAGE-----AEKLHERLARINARAPVYTVT-HGDI  189 (222)
T ss_dssp             EEEEEEEEETTTHHHHHHHCHHHHHHH-HT-----CSEEEEECTTTCSC-----THHHHHHHHHHCSSSCEEECC-SSCC
T ss_pred             ccchhhhhhhhhhhhhhhhhHHHHHHH-Hh-----CCcccccccccccH-----HHHHHHHHHHHhCCCeEEEee-CCcc
Confidence            57789999998765432222222 222 12     22888999998642     234555566555  5777654 3334


Q ss_pred             CHHHHH
Q 027949          165 NVEEVF  170 (216)
Q Consensus       165 gi~~l~  170 (216)
                      .++.+|
T Consensus       190 ~~~~ll  195 (222)
T d1nija1         190 DLGLLF  195 (222)
T ss_dssp             CGGGGS
T ss_pred             CHHHhh
Confidence            555544

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.30  E-value=1.2e-07  Score=68.98  Aligned_cols=59  Identities=24%  Similarity=0.191  Sum_probs=35.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCC------ccccceeeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTT------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR   78 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   78 (216)
                      ..+++|.+|||||||+|+|.+.....      ....+..++.....+...+.   -.++||||..++.
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~~  161 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANLE  161 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTCC
T ss_pred             eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCcccccc
Confidence            56899999999999999998754321      11122222233334444432   2577999976544

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.30  E-value=5.7e-08  Score=70.07  Aligned_cols=92  Identities=11%  Similarity=0.084  Sum_probs=53.5

Q ss_pred             EEEEEEeCCCccccccccc----ccc--------ccccEEEEEEeCCCH-hHHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 027949           64 IKLQIWDTAGQERFRTITT----AYY--------RGAMGILLVYDVTDE-SSFNNIRNWIRNIEQHASDNVNKILVGNKA  130 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~----~~~--------~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  130 (216)
                      +.+.|+||+|...+.....    .+.        ..-+-.++|+|++.. +....+...+..+      + +--++++|.
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~------~-~~~lI~TKl  161 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV------G-LTGVIVTKL  161 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH------C-CSEEEEECT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc------C-CceEEEecc
Confidence            4678999999654432211    111        123567888888654 3444444444333      1 225678999


Q ss_pred             CCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q 027949          131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEV  169 (216)
Q Consensus       131 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  169 (216)
                      |-..     ..-.+..++...+.|+..++  +|++++++
T Consensus       162 Det~-----~~G~~l~~~~~~~~Pi~~i~--~Gq~p~Dl  193 (207)
T d1okkd2         162 DGTA-----KGGVLIPIVRTLKVPIKFVG--VGEGPDDL  193 (207)
T ss_dssp             TSSC-----CCTTHHHHHHHHCCCEEEEE--CSSSTTCE
T ss_pred             CCCC-----CccHHHHHHHHHCCCEEEEe--CCCChHhC
Confidence            9432     22345566778888887776  45555554

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.29  E-value=1.6e-07  Score=67.78  Aligned_cols=92  Identities=16%  Similarity=0.192  Sum_probs=54.0

Q ss_pred             EEEEEEeCCCcccccccc-------ccccc-----cccEEEEEEeCCCH-hHHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 027949           64 IKLQIWDTAGQERFRTIT-------TAYYR-----GAMGILLVYDVTDE-SSFNNIRNWIRNIEQHASDNVNKILVGNKA  130 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~-------~~~~~-----~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  130 (216)
                      +.+.|+||+|....+...       .....     .-+-.++|.|+... +....+...+..+       -+--++++|.
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-------~~~~lIlTKl  164 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV-------GLTGITLTKL  164 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS-------CCCEEEEECC
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc-------CCceEEEeec
Confidence            467899999954332211       11111     13568888888653 3344443333222       1336778999


Q ss_pred             CCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q 027949          131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEV  169 (216)
Q Consensus       131 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  169 (216)
                      |-..     ..-.+...+...+.|+..++  .|++++++
T Consensus       165 De~~-----~~G~~l~~~~~~~~Pi~~i~--~Gq~v~Dl  196 (211)
T d2qy9a2         165 DGTA-----KGGVIFSVADQFGIPIRYIG--VGERIEDL  196 (211)
T ss_dssp             TTCT-----TTTHHHHHHHHHCCCEEEEE--CSSSGGGE
T ss_pred             CCCC-----CccHHHHHHHHHCCCEEEEe--CCCCcccC
Confidence            9422     23456677888889988886  67776554

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.29  E-value=1.7e-07  Score=67.76  Aligned_cols=92  Identities=21%  Similarity=0.166  Sum_probs=53.5

Q ss_pred             EEEEEEeCCCcccccccc----ccccc--------cccEEEEEEeCCCHh-HHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 027949           64 IKLQIWDTAGQERFRTIT----TAYYR--------GAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKILVGNKA  130 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~----~~~~~--------~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  130 (216)
                      +.+.|+||+|...++...    ..+.+        ..+-.++|+|+.... .+..+...+..+       .+--++++|.
T Consensus        94 ~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-------~~~~lI~TKl  166 (213)
T d1vmaa2          94 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAV-------NVTGIILTKL  166 (213)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHHS-------CCCEEEEECG
T ss_pred             CCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhhhhhcccc-------CCceEEEecc
Confidence            467899999954433211    11111        135688899986542 333333332222       2336778999


Q ss_pred             CCCCCCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q 027949          131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEV  169 (216)
Q Consensus       131 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  169 (216)
                      |-..     ..-.+..++...+.|+..++  +|++++++
T Consensus       167 De~~-----~~G~~l~~~~~~~~Pi~~i~--~Gq~v~Dl  198 (213)
T d1vmaa2         167 DGTA-----KGGITLAIARELGIPIKFIG--VGEKAEDL  198 (213)
T ss_dssp             GGCS-----CTTHHHHHHHHHCCCEEEEE--CSSSGGGE
T ss_pred             cCCC-----cccHHHHHHHHHCCCEEEEe--CCCCcccC
Confidence            9422     23456677788888888876  57767654

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.23  E-value=6.1e-06  Score=57.40  Aligned_cols=23  Identities=30%  Similarity=0.755  Sum_probs=21.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      +||+|+|++|+|||||++.+++.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            58999999999999999999873

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.20  E-value=2.3e-07  Score=67.02  Aligned_cols=92  Identities=16%  Similarity=0.185  Sum_probs=53.7

Q ss_pred             EEEEEEeCCCcccccc--c----ccccc--ccccEEEEEEeCCCHh-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027949           64 IKLQIWDTAGQERFRT--I----TTAYY--RGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKILVGNKADMDE  134 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~--~----~~~~~--~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  134 (216)
                      ..+.++||+|...+..  .    ...+.  -..+-+++|++++... ....+...+    ...   .+--+++||.|-. 
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~----~~~---~~~~lI~TKlDet-  166 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFN----QAS---KIGTIIITKMDGT-  166 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHH----HHC---TTEEEEEECTTSC-
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhh----ccc---CcceEEEecccCC-
Confidence            4788999999654432  1    11111  1245678888886543 333332222    221   1235679999942 


Q ss_pred             CCCccChHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q 027949          135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEV  169 (216)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  169 (216)
                          ...-.+..++...++|+..++  +|++++++
T Consensus       167 ----~~~G~~l~~~~~~~lPi~~it--~Gq~v~DL  195 (211)
T d1j8yf2         167 ----AKGGGALSAVAATGATIKFIG--TGEKIDEL  195 (211)
T ss_dssp             ----SCHHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred             ----CcccHHHHHHHHHCcCEEEEe--CCCCcccC
Confidence                234566677788888888776  57776654

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.17  E-value=2.6e-06  Score=64.02  Aligned_cols=113  Identities=15%  Similarity=0.147  Sum_probs=72.5

Q ss_pred             ccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEecC
Q 027949           82 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK  161 (216)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (216)
                      ...+..+|++|+|+|+-+|.+...  ..   +.... .+.|.++|+||+|+.+..   ..+....+....+...+.+|+.
T Consensus        10 ~~~i~~~DvIl~V~DaR~P~ss~~--~~---l~~~~-~~Kp~IlVlNK~DLv~~~---~~~~w~~~f~~~~~~~i~isa~   80 (273)
T d1puja_          10 TEKLKLIDIVYELVDARIPMSSRN--PM---IEDIL-KNKPRIMLLNKADKADAA---VTQQWKEHFENQGIRSLSINSV   80 (273)
T ss_dssp             HHHGGGCSEEEEEEETTSTTTTSC--HH---HHHHC-SSSCEEEEEECGGGSCHH---HHHHHHHHHHTTTCCEEECCTT
T ss_pred             HHHHHhCCEEEEEEECCCCCCCCC--HH---HHHHH-cCCCeEEEEECccCCchH---HHHHHHHHHHhcCCccceeecc
Confidence            445788999999999988765332  11   11222 268999999999986521   2223333444556789999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhhccc----CCCCCccccccCCCCccc
Q 027949          162 TNLNVEEVFFSIARDIKQRLADTD----SRAEPQTIKINQPDQAGG  203 (216)
Q Consensus       162 ~~~gi~~l~~~l~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~  203 (216)
                      ++.+..++..++.+.+.+..+...    .........+.-++.+++
T Consensus        81 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~vvG~PNvGKS  126 (273)
T d1puja_          81 NGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKS  126 (273)
T ss_dssp             TCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHH
T ss_pred             cCCCccccchhhhhhhhhhhhhhhhccCCCCceEEEEEecCccchh
Confidence            999999888888777666544322    222222445555555554

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.17  E-value=2.4e-07  Score=67.57  Aligned_cols=58  Identities=26%  Similarity=0.251  Sum_probs=31.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCC------ccccceeeeEEEEEEEECCeEEEEEEEeCCCccccc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSFTT------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR   78 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   78 (216)
                      ..+++|++|||||||+|+|.+.....      ....+..++.....+..++.    .++||||..++.
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~~gg----~iiDTPG~r~~~  162 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGG----LVADTPGFSSLE  162 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTE----EEESSCSCSSCC
T ss_pred             eEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEecCCC----EEEECCcccccc
Confidence            45799999999999999998753221      11111111122222334552    367999986654

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.10  E-value=5e-07  Score=65.09  Aligned_cols=93  Identities=19%  Similarity=0.149  Sum_probs=50.3

Q ss_pred             EEEEEEeCCCcccccccccc----c--cccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027949           64 IKLQIWDTAGQERFRTITTA----Y--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR  137 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~----~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~  137 (216)
                      ..+.++||+|....+.....    +  ..+.+-+++|.|+.....-..   ....+....+   .--++++|.|-..   
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~---~~~~f~~~~~---~~~~I~TKlDe~~---  163 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALS---VARAFDEKVG---VTGLVLTKLDGDA---  163 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHH---HHHHHHHHTC---CCEEEEECGGGCS---
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHH---HHHHHHhhCC---CCeeEEeecCccc---
Confidence            46889999996544332111    1  124567889999876543222   2222222221   2257789999422   


Q ss_pred             ccChHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q 027949          138 AVPTSKGQALADEYGIKFFETSAKTNLNVEEV  169 (216)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  169 (216)
                        ..-.+..++...+.|+..++  .|+..+++
T Consensus       164 --~~G~~l~~~~~~~~Pi~~i~--~Gq~pedl  191 (207)
T d1ls1a2         164 --RGGAALSARHVTGKPIYFAG--VSEKPEGL  191 (207)
T ss_dssp             --SCHHHHHHHHHHCCCEEEEC--------CC
T ss_pred             --cchHHHHHHHHHCCCEEEEe--CCCChhhc
Confidence              23456677788888887774  34444443

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.65  E-value=1.1e-05  Score=56.14  Aligned_cols=40  Identities=15%  Similarity=0.280  Sum_probs=28.1

Q ss_pred             HHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHHHhhccc
Q 027949          143 KGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTD  185 (216)
Q Consensus       143 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~  185 (216)
                      ...++...++.+++.+.+   .++++.++.+.+.+.+..+..+
T Consensus       147 ~~~~~l~~~~~~~i~i~~---~~~~e~~~~i~~~I~~ll~~~~  186 (192)
T d1lw7a2         147 LLKKLLDKYKVPYIEIES---PSYLDRYNQVKAVIEKVLNEEE  186 (192)
T ss_dssp             HHHHHHHGGGCCCEEEEC---SSHHHHHHHHHHHHHHHTSCCC
T ss_pred             HHHHHHHHCCCCEEEeCC---CCHHHHHHHHHHHHHHHHCcCc
Confidence            345556667788877753   4788999888888877655544

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=2.1e-05  Score=54.03  Aligned_cols=21  Identities=33%  Similarity=0.397  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~   37 (216)
                      -|+|+|.+|||||||++.|..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999985

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.54  E-value=1.7e-05  Score=54.57  Aligned_cols=23  Identities=39%  Similarity=0.605  Sum_probs=20.6

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHc
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~   37 (216)
                      .++|+|+|++||||||+.+.|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999965

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.54  E-value=2.5e-05  Score=53.87  Aligned_cols=24  Identities=25%  Similarity=0.452  Sum_probs=21.7

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcC
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .++|+|.|++||||||+.+.|...
T Consensus         5 ~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           5 GINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHH
Confidence            489999999999999999999754

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.45  E-value=3.3e-05  Score=53.82  Aligned_cols=22  Identities=27%  Similarity=0.483  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ++|+|+|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998865

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.42  E-value=3.9e-05  Score=51.71  Aligned_cols=21  Identities=38%  Similarity=0.485  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027949           18 LLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~   38 (216)
                      |+|.|+|||||||+.+.|...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            788999999999999998653

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.37  E-value=4.7e-05  Score=53.17  Aligned_cols=23  Identities=26%  Similarity=0.484  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      ++|+|+|+|||||||+.+.|...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999998754

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.36  E-value=5.5e-05  Score=53.29  Aligned_cols=24  Identities=25%  Similarity=0.533  Sum_probs=21.7

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcC
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .++|+|+|+|||||||+...|...
T Consensus         6 ~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           6 LLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEEECCCCCCHHHHHHHHHHH
Confidence            489999999999999999999863

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.34  E-value=5.5e-05  Score=52.72  Aligned_cols=23  Identities=26%  Similarity=0.680  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      ++|+|+|+|||||||+.+.|...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999998753

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.34  E-value=5.5e-05  Score=53.16  Aligned_cols=22  Identities=23%  Similarity=0.563  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ++|+++|+|||||||+.+.|..
T Consensus         4 ~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           4 VRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            7999999999999999999875

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=2.5e-05  Score=54.64  Aligned_cols=22  Identities=27%  Similarity=0.499  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCC
Q 027949           18 LLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~~   39 (216)
                      |+|+|++|+||+||+++|+...
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7899999999999999998643

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=5.6e-05  Score=52.57  Aligned_cols=22  Identities=18%  Similarity=0.388  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ++|+|+|+|||||||..+.|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999988865

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.29  E-value=6.8e-05  Score=52.27  Aligned_cols=22  Identities=32%  Similarity=0.638  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ++|+|+|+|||||||+.+.|..
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            7899999999999999999975

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.29  E-value=6.4e-05  Score=51.49  Aligned_cols=22  Identities=32%  Similarity=0.501  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -|+|.|++||||||+.+.|...
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3889999999999999999854

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.26  E-value=7.2e-05  Score=51.32  Aligned_cols=20  Identities=20%  Similarity=0.400  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 027949           18 LLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~   37 (216)
                      +.|+|.+|||||||+++|..
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            36999999999999999875

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.24  E-value=0.0001  Score=51.82  Aligned_cols=22  Identities=18%  Similarity=0.335  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ..|+|+|+|||||||+.+.|..
T Consensus         7 ~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999975

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.22  E-value=5.9e-05  Score=52.98  Aligned_cols=23  Identities=17%  Similarity=0.283  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      ++|+|+|++||||||+.+.|...
T Consensus         4 m~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999988653

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00019  Score=53.62  Aligned_cols=62  Identities=19%  Similarity=0.210  Sum_probs=39.8

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHcCCCCCcc-----ccceeeeEEEEEEEE-CCeEEEEEEEeCCCccc
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSF-----ITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQER   76 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~   76 (216)
                      .+..-|.|+|+.++|||+|+|.|++.......     ..|.|  .-.+.... ++....+.++||.|...
T Consensus        30 ~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~G--iw~~~~~~~~~~~~~~~~lDteG~~~   97 (277)
T d1f5na2          30 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKG--IWMWCVPHPKKPGHILVLLDTEGLGD   97 (277)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCS--EEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCc--eEEEEeeccCCCCceEEEEecccccc
Confidence            34668899999999999999999987643211     12233  22222111 33346788899999643

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.15  E-value=0.0001  Score=52.39  Aligned_cols=23  Identities=30%  Similarity=0.393  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++++|+.|||||||++.+++..
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            36899999999999999998754

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.14  E-value=0.00011  Score=53.69  Aligned_cols=23  Identities=30%  Similarity=0.297  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      +|+|+|++|||||||++.+.+-.
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            58999999999999999999753

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.14  E-value=0.00019  Score=49.70  Aligned_cols=22  Identities=23%  Similarity=0.309  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      .-|+++|.+|||||||.+.+..
T Consensus        15 ~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          15 EVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTG
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999999864

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.12  E-value=0.00013  Score=49.39  Aligned_cols=22  Identities=27%  Similarity=0.548  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .|+++|++||||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999754

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.11  E-value=0.00013  Score=51.79  Aligned_cols=22  Identities=14%  Similarity=0.374  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      .=|+++|.|||||||+.++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999974

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00013  Score=50.29  Aligned_cols=21  Identities=38%  Similarity=0.716  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~   37 (216)
                      .|.|.|++|+|||||+..+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            378999999999999999865

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.00014  Score=52.79  Aligned_cols=23  Identities=35%  Similarity=0.489  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      -++++|++|||||||++.+.+-.
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            46899999999999999998754

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.07  E-value=0.00015  Score=53.11  Aligned_cols=23  Identities=26%  Similarity=0.275  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|||||||++.+.+-.
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh
Confidence            67999999999999999998743

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.07  E-value=0.00015  Score=50.47  Aligned_cols=21  Identities=33%  Similarity=0.509  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027949           18 LLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~   38 (216)
                      |+|+|++||||||+++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            679999999999999999764

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.06  E-value=0.00011  Score=50.29  Aligned_cols=22  Identities=36%  Similarity=0.499  Sum_probs=19.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      .+|+++|++||||||+.+.|..
T Consensus         2 p~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999988864

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.05  E-value=0.00016  Score=52.69  Aligned_cols=22  Identities=32%  Similarity=0.469  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCC
Q 027949           18 LLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~~   39 (216)
                      ++++|++|||||||++.+.+-.
T Consensus        27 ~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCChHHHHHHHHHcCC
Confidence            4689999999999999999854

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00019  Score=50.39  Aligned_cols=22  Identities=23%  Similarity=0.548  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      +.|+|+|+|||||||..+.|..
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999875

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.04  E-value=0.00015  Score=52.61  Aligned_cols=23  Identities=30%  Similarity=0.329  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      -++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCcchhhHhccCCC
Confidence            46999999999999999888754

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.04  E-value=0.00016  Score=50.64  Aligned_cols=22  Identities=36%  Similarity=0.555  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCC
Q 027949           18 LLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~~   39 (216)
                      |+|+|++|||||||++.|....
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7899999999999999997653

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.03  E-value=0.00017  Score=49.86  Aligned_cols=20  Identities=25%  Similarity=0.328  Sum_probs=17.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 027949           18 LLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~   37 (216)
                      |+|.|++||||||+++.|..
T Consensus         4 I~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            68889999999999998854

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.02  E-value=0.00016  Score=53.30  Aligned_cols=22  Identities=32%  Similarity=0.421  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .++|+|++|||||||++.+.+-
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            6899999999999999999864

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.02  E-value=0.00018  Score=52.41  Aligned_cols=23  Identities=35%  Similarity=0.459  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      -++++|++|||||||++.+.+-.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            47999999999999999999864

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.01  E-value=0.00018  Score=49.23  Aligned_cols=21  Identities=33%  Similarity=0.506  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027949           18 LLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~   38 (216)
                      ++|+|++||||||+.+.|...
T Consensus         9 ivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           9 YVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            467999999999999998753

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00018  Score=52.92  Aligned_cols=23  Identities=26%  Similarity=0.322  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|||||||++.+.+-.
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhccc
Confidence            67999999999999999998743

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.99  E-value=0.00018  Score=49.97  Aligned_cols=21  Identities=38%  Similarity=0.599  Sum_probs=17.5

Q ss_pred             EEE-EEcCCCCcHHHHHHHHHc
Q 027949           17 KLL-LIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~-v~G~~~~GKStli~~l~~   37 (216)
                      ||+ |.|.+||||||+++.|..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            555 579999999999999854

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.97  E-value=0.00019  Score=49.05  Aligned_cols=21  Identities=33%  Similarity=0.521  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~   37 (216)
                      +|+++|++||||||+.+.|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998854

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.96  E-value=0.0002  Score=53.57  Aligned_cols=23  Identities=30%  Similarity=0.492  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|||||||++.+++--
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            57999999999999999998743

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.96  E-value=0.00015  Score=52.49  Aligned_cols=23  Identities=22%  Similarity=0.421  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      -++++|++|||||||++.+.+-.
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            36999999999999999999864

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.95  E-value=0.00022  Score=48.93  Aligned_cols=21  Identities=38%  Similarity=0.537  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027949           18 LLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~   38 (216)
                      |+|.|++||||||+.+.|...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678999999999999998754

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.94  E-value=0.00033  Score=47.99  Aligned_cols=22  Identities=18%  Similarity=0.305  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      +-|.++|.+||||||+.+.|..
T Consensus         7 ~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           7 FTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            7789999999999999988864

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.93  E-value=0.00022  Score=51.91  Aligned_cols=23  Identities=30%  Similarity=0.456  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++++|++|||||||++.+.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            46999999999999999998754

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.93  E-value=0.00037  Score=48.96  Aligned_cols=24  Identities=17%  Similarity=0.412  Sum_probs=20.7

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcC
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .--|+|+|+|||||||+...|...
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999999763

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.93  E-value=0.00045  Score=50.26  Aligned_cols=23  Identities=22%  Similarity=0.436  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            47999999999999999999854

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.91  E-value=0.00022  Score=52.08  Aligned_cols=23  Identities=30%  Similarity=0.406  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      -++++|++|||||||++.+.+-.
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            36899999999999999999854

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.00021  Score=52.04  Aligned_cols=23  Identities=35%  Similarity=0.309  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      -++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCc
Confidence            46899999999999999998754

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.00018  Score=52.20  Aligned_cols=22  Identities=45%  Similarity=0.650  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -++++|+.|||||||++.+.+-
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            3689999999999999999974

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.88  E-value=0.00027  Score=49.59  Aligned_cols=21  Identities=43%  Similarity=0.635  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027949           18 LLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~   38 (216)
                      |+|+|++||||||+++.|...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999998653

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.88  E-value=0.00025  Score=51.71  Aligned_cols=23  Identities=35%  Similarity=0.333  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      -+.++|+.|||||||++.+.+-.
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36899999999999999999864

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.87  E-value=0.00028  Score=48.28  Aligned_cols=21  Identities=29%  Similarity=0.411  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027949           18 LLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~   38 (216)
                      |+|.|++||||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            566699999999999999864

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.85  E-value=0.00024  Score=52.39  Aligned_cols=23  Identities=30%  Similarity=0.416  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .-|++.|+||+|||||.+.+.+.
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            45899999999999999999764

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.00034  Score=49.81  Aligned_cols=22  Identities=27%  Similarity=0.421  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCC
Q 027949           18 LLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~~   39 (216)
                      |+|+||+|||||||++.|+...
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhhC
Confidence            6899999999999999998653

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.79  E-value=0.00045  Score=48.14  Aligned_cols=24  Identities=29%  Similarity=0.189  Sum_probs=21.0

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHc
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ..+=|+|.|++|||||||.+.|..
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            347799999999999999999864

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.78  E-value=0.00037  Score=47.86  Aligned_cols=20  Identities=15%  Similarity=0.468  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 027949           18 LLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~   37 (216)
                      |+++|++||||||+.+.|..
T Consensus         5 Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67899999999999999864

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.78  E-value=0.0002  Score=52.72  Aligned_cols=22  Identities=32%  Similarity=0.363  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      +++|+|++|||||||++.+.+-
T Consensus        46 ~vaivG~sGsGKSTLl~ll~gl   67 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPRF   67 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHhc
Confidence            6899999999999999988864

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.76  E-value=0.00034  Score=49.14  Aligned_cols=21  Identities=19%  Similarity=0.441  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~   37 (216)
                      -|+|+|+|||||||+...|..
T Consensus        10 iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999976

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.73  E-value=0.00036  Score=51.36  Aligned_cols=22  Identities=36%  Similarity=0.463  Sum_probs=20.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCC
Q 027949           18 LLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~~   39 (216)
                      ++++|+.|||||||++.+.+..
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHHCCC
Confidence            6899999999999999999864

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.72  E-value=0.00038  Score=51.32  Aligned_cols=23  Identities=35%  Similarity=0.392  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .++|+|++|||||||++.+.+-.
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            47999999999999999998753

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.70  E-value=0.00042  Score=50.25  Aligned_cols=23  Identities=35%  Similarity=0.537  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -.+++.|+||+||||+++.+.+.
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999863

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.0003  Score=49.03  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=19.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      +.|.++|.+||||||+.+.|..
T Consensus        20 ~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          20 CTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5678999999999999999964

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.61  E-value=0.00052  Score=49.67  Aligned_cols=23  Identities=30%  Similarity=0.459  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -.+++.|+||+||||+.+.+...
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHhc
Confidence            35899999999999999998754

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.61  E-value=0.00092  Score=45.23  Aligned_cols=23  Identities=39%  Similarity=0.563  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .-|++-|+-|||||||++.++..
T Consensus        34 ~ii~L~G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_          34 IMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEecCCCccHHHHHHHHHhh
Confidence            56889999999999999998764

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.53  E-value=0.00064  Score=51.78  Aligned_cols=24  Identities=17%  Similarity=0.340  Sum_probs=21.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      -+|+|.|++|||||||++.|+..-
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCEEEEeeccccchHHHHHHhhhc
Confidence            358999999999999999998644

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.50  E-value=0.00085  Score=47.08  Aligned_cols=22  Identities=32%  Similarity=0.634  Sum_probs=19.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      -+++++|++|+|||++++.|..
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHH
Confidence            4789999999999999988765

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.43  E-value=0.0012  Score=48.13  Aligned_cols=24  Identities=29%  Similarity=0.533  Sum_probs=21.2

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcC
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      ...|++.|+||+|||++++.+.+.
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhc
Confidence            467999999999999999999753

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.001  Score=47.22  Aligned_cols=22  Identities=18%  Similarity=0.302  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      +-|+|.|++|||||||.+.|..
T Consensus         3 ~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           3 FLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999998864

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.40  E-value=0.00086  Score=48.24  Aligned_cols=22  Identities=36%  Similarity=0.605  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .+++.|++|+||||+++.+...
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            5899999999999999998764

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.36  E-value=0.0011  Score=47.33  Aligned_cols=22  Identities=23%  Similarity=0.345  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      +.|+|-|++||||||..+.|..
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            7789999999999999999875

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.36  E-value=0.0011  Score=46.29  Aligned_cols=25  Identities=28%  Similarity=0.424  Sum_probs=21.6

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcC
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      ..+-|+|-|..||||||+++.|...
T Consensus         8 kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           8 QPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHH
Confidence            3378999999999999999998753

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.35  E-value=0.00092  Score=48.64  Aligned_cols=23  Identities=22%  Similarity=0.345  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -.+++.|++|+||||+++.+.+.
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999864

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.32  E-value=0.0011  Score=48.88  Aligned_cols=22  Identities=36%  Similarity=0.543  Sum_probs=19.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      =+++++|++|+|||++++.|..
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHH
Confidence            4789999999999999988764

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.29  E-value=0.001  Score=50.23  Aligned_cols=22  Identities=36%  Similarity=0.658  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .|+++||||+|||.|.+++...
T Consensus        51 ~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          51 NILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHhhc
Confidence            4789999999999999999863

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.25  E-value=0.0012  Score=48.12  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -.++|.|++|+|||++++.+...
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998764

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.25  E-value=0.0014  Score=45.64  Aligned_cols=24  Identities=25%  Similarity=0.277  Sum_probs=20.9

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcC
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .+-|+|.|.+||||||+.+.|...
T Consensus         3 p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHC
Confidence            477899999999999999988654

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.15  E-value=0.0014  Score=47.84  Aligned_cols=23  Identities=35%  Similarity=0.530  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -.|++.|++|+|||++++.+...
T Consensus        43 ~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHHH
Confidence            35899999999999999999963

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.14  E-value=0.0013  Score=48.24  Aligned_cols=21  Identities=29%  Similarity=0.273  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027949           18 LLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~   38 (216)
                      ++|.|+||+|||++++.+...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            456699999999999998764

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.06  E-value=0.0016  Score=46.75  Aligned_cols=22  Identities=27%  Similarity=0.623  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .+++.|++|+||||+++.+...
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHH
Confidence            4799999999999999999764

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.02  E-value=0.0018  Score=45.93  Aligned_cols=21  Identities=29%  Similarity=0.453  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~   37 (216)
                      -|+|.|+|||||||....|..
T Consensus         5 iI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            467889999999999999875

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.00  E-value=0.0016  Score=47.59  Aligned_cols=21  Identities=24%  Similarity=0.240  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~   37 (216)
                      -|+|.|++|+|||||++.+..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            468999999999999999865

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.96  E-value=0.0015  Score=47.34  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -.+++.|++|+||||+++.+...
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHh
Confidence            35899999999999999998764

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=95.96  E-value=0.002  Score=47.32  Aligned_cols=23  Identities=26%  Similarity=0.475  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -.+++.|+||+|||++++.+...
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHHH
Confidence            35899999999999999999853

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.95  E-value=0.002  Score=46.08  Aligned_cols=22  Identities=18%  Similarity=0.456  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .+++.|++|+||||+++.+...
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHHH
Confidence            4799999999999999988753

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.91  E-value=0.0021  Score=47.18  Aligned_cols=23  Identities=26%  Similarity=0.446  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -.|++.|+||+|||++++.+...
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHHH
Confidence            35899999999999999999864

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.86  E-value=0.0032  Score=44.59  Aligned_cols=24  Identities=29%  Similarity=0.357  Sum_probs=20.8

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHc
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~   37 (216)
                      .-+-|.+.|.|||||||+.+.|..
T Consensus        23 kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          23 RGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            336789999999999999999874

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.86  E-value=0.0022  Score=45.81  Aligned_cols=22  Identities=27%  Similarity=0.590  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .+++.|++|+||||+++.+...
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            4799999999999999999864

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.73  E-value=0.0029  Score=44.41  Aligned_cols=21  Identities=29%  Similarity=0.471  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~   37 (216)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999998864

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.70  E-value=0.0037  Score=44.17  Aligned_cols=24  Identities=33%  Similarity=0.404  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      +-|+|.|..||||||+.+.|....
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~G   27 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADLG   27 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEECCCcCCHHHHHHHHHHCC
Confidence            558899999999999999886543

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=95.68  E-value=0.004  Score=46.82  Aligned_cols=25  Identities=20%  Similarity=0.179  Sum_probs=21.3

Q ss_pred             CceEEEEEEcCCCCcHHHHHHHHHc
Q 027949           13 DYLIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        13 ~~~~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ...+-|+|.|++|||||||.+.|..
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            4458899999999999999888754

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.67  E-value=0.0026  Score=46.86  Aligned_cols=24  Identities=25%  Similarity=0.422  Sum_probs=21.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      -.|++.|++|+|||+|++++.+.-
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCcchhHHHHHHHHh
Confidence            458999999999999999998653

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=95.65  E-value=0.0083  Score=43.87  Aligned_cols=89  Identities=16%  Similarity=0.149  Sum_probs=50.6

Q ss_pred             EEEEEEeCCCccccccc-cccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcC-CCCcE-EEEEeCCCCCCCCCccC
Q 027949           64 IKLQIWDTAGQERFRTI-TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNK-ILVGNKADMDESKRAVP  140 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~-~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~-ivv~nK~Dl~~~~~~~~  140 (216)
                      +.+.++|+|+.-..... .......+|.++++.+. +..++..+......+..... .+.++ -+|.|+.+...     .
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~-----~  189 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN-----E  189 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC-----C
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCC-----c
Confidence            56788898764322221 11222347777776665 56666666666555554332 23333 46789987533     2


Q ss_pred             hHHHHHHHHHhCCeEEEE
Q 027949          141 TSKGQALADEYGIKFFET  158 (216)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~  158 (216)
                      .+..+.+....+.+++.+
T Consensus       190 ~~~~~~~~~~~~~~~~~~  207 (269)
T d1cp2a_         190 YELLDAFAKELGSQLIHF  207 (269)
T ss_dssp             HHHHHHHHHHHTCCEEEE
T ss_pred             cchhhhhHhhcCCeEEEE
Confidence            355667777788766543

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.64  E-value=0.0026  Score=50.46  Aligned_cols=21  Identities=38%  Similarity=0.759  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~   37 (216)
                      +|+++||+|||||-|.++|..
T Consensus        51 NILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999975

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.39  E-value=0.0068  Score=42.59  Aligned_cols=22  Identities=32%  Similarity=0.439  Sum_probs=19.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      +-|+|.|..||||||+.+.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999998864

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.30  E-value=0.00099  Score=46.39  Aligned_cols=18  Identities=39%  Similarity=0.601  Sum_probs=16.2

Q ss_pred             EEEcCCCCcHHHHHHHHH
Q 027949           19 LLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        19 ~v~G~~~~GKStli~~l~   36 (216)
                      +|+|+.||||||++.+|.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            578999999999999984

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.22  E-value=0.0049  Score=43.42  Aligned_cols=20  Identities=20%  Similarity=0.308  Sum_probs=17.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 027949           18 LLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~   37 (216)
                      |+|-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67889999999999998864

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.011  Score=41.27  Aligned_cols=24  Identities=13%  Similarity=0.111  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGSF   40 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~~   40 (216)
                      -+.|.|++|+|||+|...+..+-.
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~~   48 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTCQ   48 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            358999999999999999876543

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.11  E-value=0.0096  Score=44.15  Aligned_cols=23  Identities=22%  Similarity=0.358  Sum_probs=19.4

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHH
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~   36 (216)
                      ..+=|.|.|.+|||||||...|.
T Consensus        26 ~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          26 CPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCEEEEeECCCCCCHHHHHHHHH
Confidence            34778999999999999987764

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.05  E-value=0.0039  Score=48.45  Aligned_cols=21  Identities=33%  Similarity=0.650  Sum_probs=17.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHH
Q 027949           16 IKLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~   36 (216)
                      =+++++|++|+|||++++.|.
T Consensus        44 ~n~llvG~~GvGKtaiv~~la   64 (387)
T d1qvra2          44 NNPVLIGEPGVGKTAIVEGLA   64 (387)
T ss_dssp             CCCEEEECTTSCHHHHHHHHH
T ss_pred             CCCeEECCCCCCHHHHHHHHH
Confidence            356999999999999996554

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=94.99  E-value=0.0063  Score=46.83  Aligned_cols=21  Identities=24%  Similarity=0.298  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~   37 (216)
                      .+++.|+||+|||+|.+.+.+
T Consensus       156 ~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         156 YWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999875

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.88  E-value=0.005  Score=45.87  Aligned_cols=18  Identities=28%  Similarity=0.545  Sum_probs=16.4

Q ss_pred             EEEcCCCCcHHHHHHHHH
Q 027949           19 LLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        19 ~v~G~~~~GKStli~~l~   36 (216)
                      +++|+.||||||+++++.
T Consensus        28 vlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEECCTTTCSTHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHH
Confidence            789999999999999873

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.88  E-value=0.0036  Score=46.56  Aligned_cols=21  Identities=29%  Similarity=0.480  Sum_probs=15.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~   37 (216)
                      =|+|.|.+||||||+.++|..
T Consensus         6 IIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            389999999999999988744

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.80  E-value=0.0075  Score=42.60  Aligned_cols=31  Identities=16%  Similarity=0.116  Sum_probs=22.1

Q ss_pred             eEEEEecCCCCCHHHHHHHHHHHHHHHhhcccC
Q 027949          154 KFFETSAKTNLNVEEVFFSIARDIKQRLADTDS  186 (216)
Q Consensus       154 ~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~~  186 (216)
                      .++.+.+.  ..++++...|...+.+.......
T Consensus       171 ~~~~IDa~--~~~e~V~~~I~~~v~~~l~~~~~  201 (209)
T d1nn5a_         171 NWKMVDAS--KSIEAVHEDIRVLSEDAIATATE  201 (209)
T ss_dssp             CEEEEETT--SCHHHHHHHHHHHHHHHHHHGGG
T ss_pred             CEEEEECC--CCHHHHHHHHHHHHHHHHHhccc
Confidence            56777664  47899988888877777665543

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.77  E-value=0.007  Score=43.20  Aligned_cols=23  Identities=26%  Similarity=0.198  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      -++|.|++|+|||+|...+...-
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            36899999999999999987543

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.76  E-value=0.005  Score=44.09  Aligned_cols=22  Identities=23%  Similarity=0.306  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .|+|-|+.||||||+++.|...
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988753

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=94.73  E-value=0.0044  Score=47.06  Aligned_cols=21  Identities=33%  Similarity=0.593  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~   37 (216)
                      .|++.|++|+|||+|++++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            589999999999999999864

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=94.72  E-value=0.01  Score=40.70  Aligned_cols=24  Identities=42%  Similarity=0.631  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .-|++.|++|+||||+.-.|...-
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcC
Confidence            458999999999999999988654

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.68  E-value=0.0083  Score=43.10  Aligned_cols=23  Identities=22%  Similarity=0.205  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      -++|.|++|+|||+|.-.++.+-
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            36899999999999999887644

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=94.65  E-value=0.0086  Score=46.73  Aligned_cols=22  Identities=32%  Similarity=0.385  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -|+|.|+.||||||++..++..
T Consensus       160 liLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         160 IILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEcCCCCCccHHHHHHhhh
Confidence            4899999999999999999874

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.62  E-value=0.0092  Score=44.04  Aligned_cols=23  Identities=30%  Similarity=0.385  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .-|.|.|+.|+|||||...+.+.
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            45789999999999999998764

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=94.50  E-value=0.011  Score=40.52  Aligned_cols=24  Identities=38%  Similarity=0.578  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .-|++.|++|+||||+.-.|...-
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            458999999999999999988643

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=94.45  E-value=0.0095  Score=45.84  Aligned_cols=22  Identities=32%  Similarity=0.607  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      -+++++||+|||||-+.++|..
T Consensus        69 ~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          69 SNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             cceeeeCCCCccHHHHHHHHHh
Confidence            4589999999999999999865

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.41  E-value=0.015  Score=44.16  Aligned_cols=25  Identities=24%  Similarity=0.355  Sum_probs=22.4

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcC
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      ..++|.|=|.-|+||||+++.|...
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHH
Confidence            4589999999999999999999864

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.40  E-value=0.0094  Score=45.21  Aligned_cols=25  Identities=24%  Similarity=0.405  Sum_probs=22.6

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHcC
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      ..++|.|=|.-|+||||+++.|...
T Consensus         4 ~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           4 GVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHH
Confidence            4689999999999999999999864

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.38  E-value=0.011  Score=42.28  Aligned_cols=22  Identities=36%  Similarity=0.676  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -++|.|+||+|||+|...+..+
T Consensus        28 l~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4689999999999999988764

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.35  E-value=0.012  Score=44.36  Aligned_cols=22  Identities=32%  Similarity=0.561  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      -.++++|++|+|||.|.+.|..
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCcchhHHHHHHHHh
Confidence            3689999999999999999865

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.25  E-value=0.011  Score=45.82  Aligned_cols=20  Identities=35%  Similarity=0.544  Sum_probs=17.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHH
Q 027949           16 IKLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~   36 (216)
                      +. +|+|+.|+|||+++.++.
T Consensus        27 l~-~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          27 FT-SIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EE-EEECSTTSSHHHHHHHHH
T ss_pred             EE-EEECCCCCCHHHHHHHHH
Confidence            43 578999999999999974

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=94.17  E-value=0.015  Score=43.97  Aligned_cols=24  Identities=21%  Similarity=0.382  Sum_probs=21.5

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHc
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ..++|.|=|.-|+||||+++.|..
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             CceEEEEECCcCCCHHHHHHHHHH
Confidence            458899999999999999999864

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.16  E-value=0.013  Score=41.98  Aligned_cols=22  Identities=27%  Similarity=0.448  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -|+|=|..||||||+++.|...
T Consensus         4 ~IviEG~~GsGKST~~~~L~~~   25 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4788999999999999999753

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.15  E-value=0.013  Score=41.77  Aligned_cols=23  Identities=17%  Similarity=0.128  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      -++|.|++|+|||+|...+..+-
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            36899999999999999987543

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.11  E-value=0.015  Score=43.80  Aligned_cols=21  Identities=19%  Similarity=0.474  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027949           18 LLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~   38 (216)
                      +++.|+||+|||.+.+.+...
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            455799999999999999764

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.03  E-value=0.016  Score=39.45  Aligned_cols=24  Identities=38%  Similarity=0.614  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~~   39 (216)
                      .-|++.|++|+||||+.-.|...-
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g   39 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRG   39 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcC
Confidence            568999999999999998887654

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.99  E-value=0.016  Score=40.70  Aligned_cols=20  Identities=30%  Similarity=0.537  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 027949           18 LLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~   37 (216)
                      +++.|++|+||||++..+..
T Consensus        27 lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          27 LLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            79999999999999998765

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.92  E-value=0.017  Score=41.30  Aligned_cols=22  Identities=18%  Similarity=0.092  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      -++|.|++|+|||+|...++.+
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4689999999999999998764

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.85  E-value=0.017  Score=41.45  Aligned_cols=20  Identities=30%  Similarity=0.547  Sum_probs=17.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 027949           18 LLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~   37 (216)
                      +++.|++|+||||+++.+..
T Consensus        37 ~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          37 YLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            68899999999999998754

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.83  E-value=0.017  Score=40.79  Aligned_cols=21  Identities=29%  Similarity=0.555  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027949           18 LLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~   38 (216)
                      +.+.|++|+|||-|++++.+.
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            689999999999999999864

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=93.71  E-value=0.015  Score=40.56  Aligned_cols=23  Identities=26%  Similarity=0.300  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      =.+++.|++++|||.|+..|..-
T Consensus        54 n~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          54 NCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHHHH
Confidence            46799999999999999988753

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.41  E-value=0.021  Score=40.31  Aligned_cols=20  Identities=20%  Similarity=0.200  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 027949           18 LLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~   37 (216)
                      |+|=|..||||||+++.|..
T Consensus         6 I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999998864

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=93.37  E-value=0.023  Score=41.48  Aligned_cols=20  Identities=25%  Similarity=0.448  Sum_probs=17.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 027949           18 LLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~   37 (216)
                      ++|.|.+|+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            57999999999999988764

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.32  E-value=0.022  Score=40.15  Aligned_cols=21  Identities=33%  Similarity=0.545  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~   37 (216)
                      -++|.|++|+|||+|...++.
T Consensus        28 ~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            357889999999999877653

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=93.23  E-value=0.026  Score=40.35  Aligned_cols=21  Identities=19%  Similarity=0.112  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~   37 (216)
                      -|+|.|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999999964

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=93.19  E-value=0.017  Score=42.69  Aligned_cols=15  Identities=27%  Similarity=0.625  Sum_probs=13.1

Q ss_pred             EEEEcCCCCcHHHHH
Q 027949           18 LLLIGDSGVGKSCLL   32 (216)
Q Consensus        18 i~v~G~~~~GKStli   32 (216)
                      ++|+|.+|+||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            589999999999764

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=92.89  E-value=0.021  Score=42.49  Aligned_cols=15  Identities=40%  Similarity=0.789  Sum_probs=13.2

Q ss_pred             EEEEcCCCCcHHHHH
Q 027949           18 LLLIGDSGVGKSCLL   32 (216)
Q Consensus        18 i~v~G~~~~GKStli   32 (216)
                      ++|.|.+||||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            689999999999765

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=92.66  E-value=0.03  Score=43.65  Aligned_cols=22  Identities=41%  Similarity=0.597  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .++|+|.+|+|||+++..++.+
T Consensus        52 H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          52 HLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             CEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEeCCCCcHHHHHHHHHHH
Confidence            4899999999999999877643

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=92.40  E-value=0.035  Score=40.32  Aligned_cols=20  Identities=35%  Similarity=0.509  Sum_probs=17.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 027949           18 LLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~   37 (216)
                      .+|.|++|+|||+|+-.+..
T Consensus        32 ~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            56899999999999977653

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=91.91  E-value=0.047  Score=39.90  Aligned_cols=24  Identities=17%  Similarity=0.241  Sum_probs=20.7

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHHcC
Q 027949           15 LIKLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        15 ~~~i~v~G~~~~GKStli~~l~~~   38 (216)
                      .-.+.+.|++++|||+|++.+..-
T Consensus       104 ~n~~~l~G~~~tGKS~f~~~i~~~  127 (267)
T d1u0ja_         104 RNTIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHH
Confidence            357799999999999999998753

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=91.88  E-value=0.28  Score=32.27  Aligned_cols=51  Identities=22%  Similarity=0.223  Sum_probs=28.5

Q ss_pred             ccccccccEEEEEEeCCCHhH----------HHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 027949           82 TAYYRGAMGILLVYDVTDESS----------FNNIRNWIRNIEQHASDNVNKILVGNKADM  132 (216)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~~----------~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  132 (216)
                      ...++++|++|+.......+.          ..-++.+...+..+.+++.-++++.|-.|.
T Consensus        75 ~~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv  135 (154)
T d1y7ta1          75 KVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANT  135 (154)
T ss_dssp             HHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             hhhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHHH
Confidence            345678898888775543211          222334555555655544455566777773

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=91.47  E-value=0.057  Score=39.85  Aligned_cols=22  Identities=23%  Similarity=0.424  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      |++|+|++|+|||+|+..+..+
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHHH
Confidence            7899999999999999888753

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=91.39  E-value=0.058  Score=41.20  Aligned_cols=18  Identities=22%  Similarity=0.541  Sum_probs=15.3

Q ss_pred             EEEEcCCCCcHHHHHHHH
Q 027949           18 LLLIGDSGVGKSCLLLRF   35 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l   35 (216)
                      .+|.|++|+||||++..+
T Consensus       166 ~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         166 SVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEECCTTSTHHHHHHHH
T ss_pred             EEEEcCCCCCceehHHHH
Confidence            688999999999988553

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=91.09  E-value=0.081  Score=39.55  Aligned_cols=22  Identities=32%  Similarity=0.537  Sum_probs=18.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      -.++++|++|+|||.+.+.|..
T Consensus        54 ~~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          54 GSFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHH
T ss_pred             eEEEEECCCcchHHHHHHHHHH
Confidence            3578999999999999998764

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.36  E-value=0.11  Score=32.92  Aligned_cols=22  Identities=14%  Similarity=0.179  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 027949           16 IKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~~   37 (216)
                      +.|.+.|.+|+||||+.+.|..
T Consensus         7 f~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           7 FSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             EEEEECTTCCSCHHHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHH
Confidence            8899999999999999999864

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.01  E-value=0.66  Score=32.16  Aligned_cols=64  Identities=11%  Similarity=0.036  Sum_probs=42.8

Q ss_pred             EEEEEEeCCCccccccccccccccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCC
Q 027949           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKI-LVGNKADMD  133 (216)
Q Consensus        64 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~  133 (216)
                      +.+.++|+++...  ......+..+|.++++...+ ..++..+.+....+.+.   +.|++ +|+|+.+..
T Consensus       112 ~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~---~~~~~giv~N~~~~~  176 (237)
T d1g3qa_         112 FDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA---GLAILGFVLNRYGRS  176 (237)
T ss_dssp             CSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT---TCEEEEEEEEEETSC
T ss_pred             CCEEEEccccccc--ccchhhhhhhhccccccccc-ceecchhhHHHHHHhhh---hhhhhhhhhcccccc
Confidence            5788889987532  22334456799998888864 55666666666555543   56765 789999853

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=89.95  E-value=0.83  Score=30.67  Aligned_cols=102  Identities=16%  Similarity=0.197  Sum_probs=54.8

Q ss_pred             CceEEEEEEcC-CCCcHHHHHHHHHcCCCCCccccceeeeEEEEEEEECCeEEEEEEEeCCCccc---------------
Q 027949           13 DYLIKLLLIGD-SGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---------------   76 (216)
Q Consensus        13 ~~~~~i~v~G~-~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------------   76 (216)
                      ...+||.|+|. .+.|-+ |+..|..+......                 ..+.+.++|.+....               
T Consensus        22 k~~~kV~I~GA~G~Ig~~-l~~~La~g~v~g~~-----------------~~i~L~L~di~~~~~~l~g~~mdl~d~a~~   83 (175)
T d7mdha1          22 KKLVNIAVSGAAGMISNH-LLFKLASGEVFGQD-----------------QPIALKLLGSERSFQALEGVAMELEDSLYP   83 (175)
T ss_dssp             CCCEEEEEETTTSHHHHH-HHHHHHHTTTTCTT-----------------CCEEEEEECCGGGHHHHHHHHHHHHTTTCT
T ss_pred             CCCcEEEEECCCcHHHHH-HHHHHHcCcccCCC-----------------ceEEEEEecCccccchhcchhhhhcccccc
Confidence            35589999997 667755 45555555432211                 114555666554211               


Q ss_pred             ------cccccccccccccEEEEEEeCCCHh--H--------HHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 027949           77 ------FRTITTAYYRGAMGILLVYDVTDES--S--------FNNIRNWIRNIEQHASDNVNKILVGNKADM  132 (216)
Q Consensus        77 ------~~~~~~~~~~~~d~~i~v~d~~~~~--~--------~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  132 (216)
                            ........+.++|++|++.......  +        ..-++.+...+..+.+.+.-+++|+|-.|.
T Consensus        84 ~~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~  155 (175)
T d7mdha1          84 LLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNT  155 (175)
T ss_dssp             TEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             cccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHH
Confidence                  0011233457789888887554321  1        111233445556665555666777787773

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.81  E-value=0.099  Score=37.30  Aligned_cols=19  Identities=26%  Similarity=0.378  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 027949           18 LLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~   36 (216)
                      ++|.|+..+||||+++.+.
T Consensus        44 ~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHH
Confidence            5899999999999999863

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=89.44  E-value=0.11  Score=36.69  Aligned_cols=20  Identities=30%  Similarity=0.386  Sum_probs=17.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 027949           18 LLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~   37 (216)
                      ++|.|+..+||||+++.+.-
T Consensus        38 ~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhHH
Confidence            68999999999999998643

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=88.89  E-value=0.12  Score=37.08  Aligned_cols=21  Identities=33%  Similarity=0.578  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~   37 (216)
                      -|+|.|++|+||+.+.+.+..
T Consensus        25 pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          25 PVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCcCHHHHHHHHHH
Confidence            479999999999999999865

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.37  E-value=0.15  Score=34.75  Aligned_cols=22  Identities=23%  Similarity=0.283  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCC
Q 027949           18 LLLIGDSGVGKSCLLLRFSDGS   39 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~~   39 (216)
                      |+|+|...||||.+...+....
T Consensus         2 iLVtGGarSGKS~~AE~l~~~~   23 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGDA   23 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCSC
T ss_pred             EEEECCCCccHHHHHHHHHhcC
Confidence            6899999999999999987543

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=88.34  E-value=0.15  Score=37.04  Aligned_cols=21  Identities=24%  Similarity=0.384  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027949           18 LLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        18 i~v~G~~~~GKStli~~l~~~   38 (216)
                      +.|.|++|+|||||.-.+...
T Consensus        57 tei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          57 VEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHHH
Confidence            579999999999999777653

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.30  E-value=0.19  Score=36.71  Aligned_cols=22  Identities=36%  Similarity=0.735  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      |+.++|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            7899999999999998888643

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=86.77  E-value=0.13  Score=38.09  Aligned_cols=14  Identities=43%  Similarity=0.688  Sum_probs=13.0

Q ss_pred             EEEcCCCCcHHHHH
Q 027949           19 LLIGDSGVGKSCLL   32 (216)
Q Consensus        19 ~v~G~~~~GKStli   32 (216)
                      +++|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (313)
T d2olra1          18 VFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEECSTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            79999999999976

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=85.82  E-value=0.15  Score=37.97  Aligned_cols=15  Identities=40%  Similarity=0.616  Sum_probs=13.5

Q ss_pred             EEEEcCCCCcHHHHH
Q 027949           18 LLLIGDSGVGKSCLL   32 (216)
Q Consensus        18 i~v~G~~~~GKStli   32 (216)
                      -+++|.+|+|||||-
T Consensus        17 alffGLSGTGKTTLs   31 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEECTTSCHHHHT
T ss_pred             EEEEccCCCCccccc
Confidence            489999999999975

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=85.52  E-value=0.17  Score=37.66  Aligned_cols=14  Identities=43%  Similarity=0.688  Sum_probs=13.1

Q ss_pred             EEEcCCCCcHHHHH
Q 027949           19 LLIGDSGVGKSCLL   32 (216)
Q Consensus        19 ~v~G~~~~GKStli   32 (216)
                      +++|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (323)
T d1ii2a1          18 VFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEECCTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            69999999999987

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=84.92  E-value=0.22  Score=31.74  Aligned_cols=21  Identities=24%  Similarity=0.124  Sum_probs=16.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~   37 (216)
                      ..+|.++.|+|||+++-.+..
T Consensus        10 ~~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1          10 VAHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             EEEEECCTTSCTTTHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            357799999999998865543

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=83.49  E-value=0.36  Score=31.24  Aligned_cols=19  Identities=26%  Similarity=0.461  Sum_probs=14.5

Q ss_pred             EEEcCCCCcHHH-HHHHHHc
Q 027949           19 LLIGDSGVGKSC-LLLRFSD   37 (216)
Q Consensus        19 ~v~G~~~~GKSt-li~~l~~   37 (216)
                      +++|+-.||||| |++++.+
T Consensus         6 ~i~GpMfsGKTteLi~~~~~   25 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRLHR   25 (139)
T ss_dssp             EEECSTTSCHHHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHHHH
Confidence            468999999999 5566543

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=83.09  E-value=2.5  Score=27.07  Aligned_cols=20  Identities=30%  Similarity=0.405  Sum_probs=14.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHH
Q 027949           16 IKLLLIGDSGVGKSCLLLRFS   36 (216)
Q Consensus        16 ~~i~v~G~~~~GKStli~~l~   36 (216)
                      +.+ ++|+-.|||||-+=+..
T Consensus         9 l~l-I~GpMfSGKTteLi~~~   28 (141)
T d1xx6a1           9 VEV-IVGPMYSGKSEELIRRI   28 (141)
T ss_dssp             EEE-EECSTTSSHHHHHHHHH
T ss_pred             EEE-EEeccccHHHHHHHHHH
Confidence            554 48999999999774443

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=81.83  E-value=0.54  Score=32.27  Aligned_cols=24  Identities=17%  Similarity=0.135  Sum_probs=21.0

Q ss_pred             ceEEEEEEcCCCCcHHHHHHHHHc
Q 027949           14 YLIKLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        14 ~~~~i~v~G~~~~GKStli~~l~~   37 (216)
                      ....+++-|++|+|||++...+.+
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999998875

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=81.51  E-value=1.4  Score=28.70  Aligned_cols=24  Identities=29%  Similarity=0.494  Sum_probs=16.9

Q ss_pred             eEEEEEEcC-CCCcHHHHHHHHHcCC
Q 027949           15 LIKLLLIGD-SGVGKSCLLLRFSDGS   39 (216)
Q Consensus        15 ~~~i~v~G~-~~~GKStli~~l~~~~   39 (216)
                      .+||.|+|. .++|.+... .|..+.
T Consensus         3 p~KV~IiGA~G~VG~~la~-~l~~~~   27 (154)
T d5mdha1           3 PIRVLVTGAAGQIAYSLLY-SIGNGS   27 (154)
T ss_dssp             CEEEEESSTTSHHHHTTHH-HHHTTT
T ss_pred             ceEEEEECCCCHHHHHHHH-HHHHHH
Confidence            389999996 678887655 444443

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=81.43  E-value=0.44  Score=34.50  Aligned_cols=22  Identities=23%  Similarity=0.226  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027949           17 KLLLIGDSGVGKSCLLLRFSDG   38 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~~   38 (216)
                      =+.|.|++++|||+|.-.+...
T Consensus        59 itei~G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          59 ITEIYGPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEecCCccchHHHHHHHHHH
Confidence            3578999999999999887753

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.42  E-value=0.31  Score=35.66  Aligned_cols=21  Identities=29%  Similarity=0.453  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~   37 (216)
                      |+.++|.+|+|||+|+..+..
T Consensus        70 r~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHHH
T ss_pred             EEEeecCCCCChHHHHHHHHH
Confidence            679999999999999876654

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.19  E-value=0.49  Score=34.27  Aligned_cols=21  Identities=19%  Similarity=0.292  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027949           17 KLLLIGDSGVGKSCLLLRFSD   37 (216)
Q Consensus        17 ~i~v~G~~~~GKStli~~l~~   37 (216)
                      -+.|.|++++|||+|.-.+..
T Consensus        62 i~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          62 VIEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEecCCCcHHHHHHHHHHH
Confidence            357899999999999877664

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.90  E-value=1.1  Score=28.56  Aligned_cols=32  Identities=9%  Similarity=0.209  Sum_probs=20.8

Q ss_pred             CHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027949           99 DESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD  133 (216)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  133 (216)
                      ..+-|.++..+...+...   +.++++.+-..|-.
T Consensus        81 EaQFf~dl~~~~~~~~~~---~~~Viv~GLd~Df~  112 (133)
T d1xbta1          81 EGQFFPDIVEFCEAMANA---GKTVIVAALDGTFQ  112 (133)
T ss_dssp             SGGGCTTHHHHHHHHHHT---TCEEEEECCSBCTT
T ss_pred             hhHHHHHHHHHHHHHHhc---CCcEEEEEeccccc
Confidence            345555565655555543   78899888888853

>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=80.89  E-value=3.7  Score=27.08  Aligned_cols=57  Identities=19%  Similarity=0.191  Sum_probs=39.1

Q ss_pred             CCCHhHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEec
Q 027949           97 VTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSA  160 (216)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (216)
                      .+|..++.........+...  ...|+|+++.-....     ...+++.+|+...+++++.+-.
T Consensus         2 ~sd~~~l~~~v~~~~~~l~~--AkrPvIi~G~g~~~~-----~a~~~l~~lae~~~~Pv~tt~~   58 (175)
T d1zpda1           2 ASDEASLNAAVDETLKFIAN--RDKVAVLVGSKLRAA-----GAEEAAVKFTDALGGAVATMAA   58 (175)
T ss_dssp             CCCHHHHHHHHHHHHHHHTT--CSCEEEEECTTTTTT-----TCHHHHHHHHHHHCCCEEEEGG
T ss_pred             CCChHHHHHHHHHHHHHHHc--CCCEEEEECcCcccc-----chHHHHHHHHHhhceeEEeccc
Confidence            35666666655543333332  368999999887642     2467899999999999987654

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.40  E-value=5.2  Score=25.51  Aligned_cols=23  Identities=26%  Similarity=0.570  Sum_probs=17.6

Q ss_pred             EEEEEcC-CCCcHHHHHHHHHcCCC
Q 027949           17 KLLLIGD-SGVGKSCLLLRFSDGSF   40 (216)
Q Consensus        17 ~i~v~G~-~~~GKStli~~l~~~~~   40 (216)
                      ||.|+|. -.+| +++...+.....
T Consensus         2 Kv~IiGA~G~VG-~~~A~~l~~~~~   25 (144)
T d1mlda1           2 KVAVLGASGGIG-QPLSLLLKNSPL   25 (144)
T ss_dssp             EEEEETTTSTTH-HHHHHHHHTCTT
T ss_pred             eEEEECCCChHH-HHHHHHHHhCCc
Confidence            7999996 7899 666777776554