Citrus Sinensis ID: 027982

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210------
Protein Sequence
MCADDATCGTPTWIGKGLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYMEFNVRIHLLFS
Secondary Structure (PSIPRED)
ccccccccccHHHHHccccccccccccccHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccccccHHHHHcccccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccEEEccHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccccccHEEHHHHHHHHHHHHHHcccccccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mcaddatcgtptwigkgltcvcfkrkgtyeRICINLTPQQAERLRRLKHRMKVyfdasrpdHQEALRALWAatypdqelhgLISDQWkemgwqgkdpstdfrgagfISLENLLFFAKTFSTSFQRLLRKqggkradweypfavAGVNITFMLMQMLdleatkprtFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYMEFNVRIHLLFS
Flexible Loop (DISEMBL)
mcaddatcgtptwigkgltCVCFKRKGTYericinltpqQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQggkradweyPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYMEFNVRIHLLFS
Low Complexity Region (SEG)
MCADDATCGTPTWIGKGLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYMEFNVRIHLLFS
Disordered region (IsUnstruct)
******TCGTPTWIGKGLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYMEFNVRIHLLF*
Disordered Region (DISOPRED)
***DDA*CGTPTWIGKGLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATY************WKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYMEFNVRIHLLFS
Disordered Region (DISEMBL)
********GTPTWIGKGLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYMEFNVRIHLLFS
Disordered Region (DISPRO)
*CADDATCGTPTWIGKGLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYMEFNVRIHLLFS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MCADDATCGTPTWIGKGLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYMEFNVRIHLLFS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	216	2.2.26 [Sep-21-2011]
Q54YW1	977	ELMO domain-containing pr	yes	no	0.773	0.170	0.327	3e-25
Q54RS7	618	ELMO domain-containing pr	no	no	0.805	0.281	0.326	2e-22
Q54VR8	284	ELMO domain-containing pr	no	no	0.712	0.542	0.303	1e-19
Q8BGF6	293	ELMO domain-containing pr	yes	no	0.842	0.621	0.293	1e-18
Q8IZ81	293	ELMO domain-containing pr	yes	no	0.689	0.508	0.314	7e-18
Q08DZ3	293	ELMO domain-containing pr	yes	no	0.689	0.508	0.326	2e-17
Q5NVD7	326	ELMO domain-containing pr	no	no	0.731	0.484	0.331	5e-17
Q54UP9	1267	Ankyrin repeat and ELMO d	no	no	0.759	0.129	0.294	5e-17
Q0IIE6	326	ELMO domain-containing pr	no	no	0.731	0.484	0.326	2e-16
Q8N336	334	ELMO domain-containing pr	no	no	0.731	0.473	0.322	3e-16

>sp|Q54YW1|ELMOA_DICDI ELMO domain-containing protein A OS=Dictyostelium discoideum GN=elmoA PE=1 SV=1

 Score =  115 bits (288), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 61/186 (32%), Positives = 93/186 (50%), Gaps = 19/186 (10%)

Query: 40  QAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPST 99
           Q  R + + +R  V F+    +H   L  LW+ TYP  +L   +S+QWK+MG+QG DP T
Sbjct: 362 QRHRFQVITNRKNVTFNKESSEHDALLMKLWSLTYPGVKLESRVSEQWKQMGFQGTDPCT 421

Query: 100 DFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLE 159
           DFR  G   L+NL++FA+ ++  F++++  Q   R + EYP A AG+ +TF L   +   
Sbjct: 422 DFRAMGIWGLDNLIYFAQNYNEKFRKIVNSQ-IDRKEREYPTATAGIVLTFELYNSIFKM 480

Query: 160 AT---KPRTFVRSV---------------FLQMLSDNEWAFDLLYCVAFVVMDKQWLERN 201
            T    P     S                F  +   +  AF+ +YC  F ++D  W + N
Sbjct: 481 GTPNLNPYNSTTSNTTSNTTSTTNIDDLPFFPLFFSHPHAFEEVYCTTFQILDSTWDDMN 540

Query: 202 ATYMEF 207
            TYM F
Sbjct: 541 GTYMHF 546

Functions as a negative regulator of actin polymerization. Modulates actin/myosin II at cortex actinomyosins to prevent excessive F-actin polymerization around the cell periphery, thereby maintaining proper cell shape during phagocytosis and chemotaxis.
Dictyostelium discoideum (taxid: 44689)

>sp|Q54RS7|ELMOC_DICDI ELMO domain-containing protein C OS=Dictyostelium discoideum GN=elmoC PE=4 SV=1

 Score =  105 bits (263), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 103/190 (54%), Gaps = 16/190 (8%)

Query: 36  LTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGK 95
           +T +Q++ ++ L  +    ++++ PDH+E L+ LW+  YP+QE     S  WK+ G+Q  
Sbjct: 357 VTAKQSQTIKILFQKKSTIYESTNPDHEEYLKHLWSLLYPEQEFQKK-SPLWKKFGFQSD 415

Query: 96  DPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNIT---FML 152
           DP+ DFRG G + L NL+   +  +   Q +L +      D +YPFAVAG+NI+   F +
Sbjct: 416 DPTRDFRGMGIMGLLNLIHLVQHHNDWVQEILAQ------DRDYPFAVAGINISNLIFEV 469

Query: 153 MQMLDLEATKPRTFVR------SVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYME 206
            Q+ +    +P           ++   M   N+ AF+ LY + F ++D  W++ NATYM 
Sbjct: 470 FQISEDSLQQPWYSSFWSSSYMAMLCSMSRHNDHAFEELYFLIFNLLDHLWIQMNATYMM 529

Query: 207 FNVRIHLLFS 216
           F + I  L S
Sbjct: 530 FPLVIKKLKS 539

Dictyostelium discoideum (taxid: 44689)

>sp|Q54VR8|ELMOB_DICDI ELMO domain-containing protein B OS=Dictyostelium discoideum GN=elmoB PE=4 SV=1

 Score = 96.3 bits (238), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 87/165 (52%), Gaps = 11/165 (6%)

Query: 45  RRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGA 104
           + ++ + K+ +D +  +H+ +L  LW A  PD      +S +W  +G+QG DP+TDFRG 
Sbjct: 108 KSIEKKQKIPYDNNNLEHEASLERLWEALLPDVRRSARLSKEWGTLGFQGMDPATDFRGM 167

Query: 105 GFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPR 164
           G + L+NL++F+   S   + +L+    K     YPFA+ G+NIT +++ ++D    K  
Sbjct: 168 GILGLDNLIYFSTQHSEDAREILKNSNSKCC---YPFAITGINITALVLNLIDKPHFKIY 224

Query: 165 TFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNA-TYMEFN 208
            F     L         F+ LY + F+  D+ +  +   + MEFN
Sbjct: 225 FFKNGSTLTQ-------FNELYSLVFISFDRFYQSKKPKSIMEFN 262

Dictyostelium discoideum (taxid: 44689)

>sp|Q8BGF6|ELMD2_MOUSE ELMO domain-containing protein 2 OS=Mus musculus GN=Elmod2 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 100/194 (51%), Gaps = 12/194 (6%)

Query: 21  VCFKRKGTYERICINLTPQQAERLRRLKHRM----KVYFDASRPDHQEALRALWAATYPD 76
           +C ++  +++ IC+     Q    ++L H +    K  +D++   H++ L  LW+   P 
Sbjct: 83  ICSEKDTSFQ-ICMRTCLLQITGYKQLYHDVENVRKKPYDSANAQHEKMLLKLWSLLMPT 141

Query: 77  QELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRAD 136
           ++L   IS QW ++G+QG DP TDFRG G + L NL++F++ +++   ++L +    +  
Sbjct: 142 KKLTARISKQWADIGFQGDDPKTDFRGMGILGLINLVYFSENYTSEAHQILSRSNHPKLG 201

Query: 137 WEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQ 196
             Y +A+ G+N+T M   +L  EA K   +    F+  +   E  F   YC      DK 
Sbjct: 202 --YSYAIVGINLTEMAYSLLKSEALKLHLY---NFVPGVPTME-HFHQFYCYLVYEFDKF 255

Query: 197 WLERNA-TYMEFNV 209
           WLE    + M FN+
Sbjct: 256 WLEEEPESIMYFNL 269

Acts as a GTPase-activating protein (GAP) toward guanine nucleotide exchange factors like ARL2, ARL3, ARF1 and ARF6, but not for GTPases outside the Arf family.

Mus musculus (taxid: 10090)

>sp|Q8IZ81|ELMD2_HUMAN ELMO domain-containing protein 2 OS=Homo sapiens GN=ELMOD2 PE=1 SV=1

 Score = 90.9 bits (224), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 79/156 (50%), Gaps = 7/156 (4%)

Query: 55  FDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLF 114
           +D+    H+E L  LW    P ++L+  IS QW E+G+QG DP TDFRG G + L NL++
Sbjct: 120 YDSDNLQHEELLMKLWNLLMPTKKLNARISKQWAEIGFQGDDPKTDFRGMGILGLINLVY 179

Query: 115 FAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQM 174
           F++ +++   ++L +    +    Y +A+ G+N+T M   +L  EA K   +     +  
Sbjct: 180 FSENYTSEAHQILSRSNHPKLG--YSYAIVGINLTEMAYSLLKSEALKFHLYNLVPGIPT 237

Query: 175 LSDNEWAFDLLYCVAFVVMDKQWLERNA-TYMEFNV 209
           +      F   YC      DK W E    + M FN+
Sbjct: 238 MEH----FHQFYCYLVYEFDKFWFEEEPESIMYFNL 269

Acts as a GTPase-activating protein (GAP) toward guanine nucleotide exchange factors like ARL2, ARL3, ARF1 and ARF6, but not for GTPases outside the Arf family. Regulates IFN-related antiviral responses.

Homo sapiens (taxid: 9606)

>sp|Q08DZ3|ELMD2_BOVIN ELMO domain-containing protein 2 OS=Bos taurus GN=ELMOD2 PE=1 SV=1

 Score = 89.0 bits (219), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 81/156 (51%), Gaps = 7/156 (4%)

Query: 55  FDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLF 114
           +D+    H++ L  LW    P ++L   IS QW ++G+QG DP TDFRG G + L NL++
Sbjct: 120 YDSDNLQHEKLLIKLWNLLMPTKKLKARISKQWADIGFQGDDPKTDFRGMGILGLINLVY 179

Query: 115 FAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQM 174
           F++ +++   ++L +    +    Y +A+ G+N+T M   +L  EA K   F    F+  
Sbjct: 180 FSENYTSEAHQILSRSNHPKLG--YSYAIVGINLTEMAYSLLKSEALK---FHLYNFVPG 234

Query: 175 LSDNEWAFDLLYCVAFVVMDKQWL-ERNATYMEFNV 209
           +   E  F   YC      DK W  E+  + M FNV
Sbjct: 235 IPTME-HFHQFYCYLVYEFDKFWFEEKPESIMYFNV 269

Acts as a GTPase-activating protein (GAP) toward guanine nucleotide exchange factors like ARL2, ARL3, ARF1 and ARF6, but not for GTPases outside the Arf family.

Bos taurus (taxid: 9913)

>sp|Q5NVD7|ELMD1_PONAB ELMO domain-containing protein 1 OS=Pongo abelii GN=ELMOD1 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 87/184 (47%), Gaps = 26/184 (14%)

Query: 41  AERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTD 100
            E+LRR        +D+  P H+E L  LW    P+  L   IS QW E+G+QG DP TD
Sbjct: 119 VEKLRREP------YDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTD 172

Query: 101 FRGAGFISLENLLFFAKTFSTSFQRLL------RKQGGKRADWE---------YPFAVAG 145
           FRG G + L NL +FA+  +T+ Q++L      +     +A+WE         Y FA+ G
Sbjct: 173 FRGMGLLGLYNLQYFAERDATAAQQVLSDSLHPKCSKFSKAEWEKKRMDKAIGYSFAIVG 232

Query: 146 VNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNAT-Y 204
           +NIT +   +L   A K   +  +     LS     F   +C       K W+E +    
Sbjct: 233 INITDLAYNLLVSGALKTHFYNIAPEAPTLSH----FQQTFCYLMHEFHKFWIEEDPMDI 288

Query: 205 MEFN 208
           MEFN
Sbjct: 289 MEFN 292

Acts as a GTPase-activating protein (GAP) toward guanine nucleotide exchange factors like ARL2, ARL3, ARF1 and ARF6, but not for GTPases outside the Arf family.

Pongo abelii (taxid: 9601)

>sp|Q54UP9|ELMOD_DICDI Ankyrin repeat and ELMO domain-containing protein D OS=Dictyostelium discoideum GN=elmoD PE=4 SV=1

 Score = 87.8 bits (216), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 50/170 (29%), Positives = 89/170 (52%), Gaps = 6/170 (3%)

Query: 40  QAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPST 99
           Q  +++ L    K  ++   P HQ  L  LW+  +P+Q       + W+ +G+Q KDPS+
Sbjct: 286 QCHKIQGLIMDSKTPYNKDEPSHQRLLETLWSTLFPNQVFQ-RSHENWQIIGFQNKDPSS 344

Query: 100 DFRGAGFISLENLLFFAKTFSTSFQR-LLRKQGGKRADWEYPFAVAGVNITFMLMQMLD- 157
           DFRG G   L++L++ A+     F   L+ +Q    A++ YP+A +G+ +T  L++ +  
Sbjct: 345 DFRGMGLAGLKHLIYLAQNHKDMFMNPLINRQ--PEANY-YPYATSGIQVTSFLVECVKP 401

Query: 158 LEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYMEF 207
           +  +   + V      +L ++E A + +YCV   +    W + NATYM F
Sbjct: 402 INISANHSDVIGQIYPILFESENALNEIYCVLMEIFGIVWKDWNATYMIF 451

Dictyostelium discoideum (taxid: 44689)

>sp|Q0IIE6|ELMD1_BOVIN ELMO domain-containing protein 1 OS=Bos taurus GN=ELMOD1 PE=2 SV=1

 Score = 86.3 bits (212), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 86/184 (46%), Gaps = 26/184 (14%)

Query: 41  AERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTD 100
            E+LRR        +D+  P H+E L  LW    P+  L   IS QW E+G+QG DP TD
Sbjct: 119 VEKLRRES------YDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTD 172

Query: 101 FRGAGFISLENLLFFAKTFSTSFQRLL------RKQGGKRADWE---------YPFAVAG 145
           FRG G + L NL +FA+  + + Q++L      +     +A+WE         Y FA+ G
Sbjct: 173 FRGMGLLGLYNLQYFAERDAAAAQQVLSDSLHPKCSKFSKAEWEKKRMDKAIGYSFAIVG 232

Query: 146 VNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNAT-Y 204
           +NIT +   +L   A K   +  +     LS     F   +C       K W+E +    
Sbjct: 233 INITDLAYNLLVSGALKTHFYNIAPEAPTLSH----FQQTFCYLMHEFHKFWIEEDPMDI 288

Query: 205 MEFN 208
           MEFN
Sbjct: 289 MEFN 292

Acts as a GTPase-activating protein (GAP) toward guanine nucleotide exchange factors like ARL2, ARL3, ARF1 and ARF6, but not for GTPases outside the Arf family.

Bos taurus (taxid: 9913)

>sp|Q8N336|ELMD1_HUMAN ELMO domain-containing protein 1 OS=Homo sapiens GN=ELMOD1 PE=2 SV=3

 Score = 85.5 bits (210), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 90/192 (46%), Gaps = 34/192 (17%)

Query: 41  AERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTD 100
            E+LRR        +D+  P H+E L  LW    P+  L   IS QW E+G+QG DP TD
Sbjct: 119 VEKLRR------EAYDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTD 172

Query: 101 FRGAGFISLENLLFFAKTFSTSFQRLL------------RKQGGK--RADWE-------- 138
           FRG G + L NL +FA+  +T+ Q++L            +++  K  +A+WE        
Sbjct: 173 FRGMGLLGLYNLQYFAERDATAAQQVLSDSLHPKCRDITKEEISKFSKAEWEKKRMDKAI 232

Query: 139 -YPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQW 197
            Y FA+ G+NIT +   +L   A K   +  +     LS     F   +C       K W
Sbjct: 233 GYSFAIVGINITDLAYNLLVSGALKTHFYNIAPEAPTLSH----FQQTFCYLMHEFHKFW 288

Query: 198 LERNAT-YMEFN 208
           +E +    MEFN
Sbjct: 289 IEEDPMDIMEFN 300

Acts as a GTPase-activating protein (GAP) toward guanine nucleotide exchange factors like ARL2, ARL3, ARF1 and ARF6, but not for GTPases outside the Arf family.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
255547738	259	ELMO domain-containing protein, putative	0.962	0.803	0.899	1e-112
224110714	239	predicted protein [Populus trichocarpa]	0.953	0.861	0.869	1e-105
449435069	276	PREDICTED: ELMO domain-containing protei	0.953	0.746	0.864	1e-105
225425436	301	PREDICTED: ELMO domain-containing protei	0.953	0.684	0.893	1e-103
297738445	269	unnamed protein product [Vitis vinifera]	0.953	0.765	0.893	1e-103
253761537	249	hypothetical protein SORBIDRAFT_0019s004	0.953	0.827	0.820	1e-102
194693986	287	unknown [Zea mays] gi|413920846|gb|AFW60	0.949	0.714	0.819	1e-101
108864397	285	phagocytosis and cell motility protein E	0.953	0.722	0.815	1e-100
115485527	250	Os11g0483900 [Oryza sativa Japonica Grou	0.953	0.824	0.815	1e-100
357156783	282	PREDICTED: ELMO domain-containing protei	0.949	0.726	0.809	1e-100

>gi|255547738|ref|XP_002514926.1| ELMO domain-containing protein, putative [Ricinus communis] gi|223545977|gb|EEF47480.1| ELMO domain-containing protein, putative [Ricinus communis]

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 187/208 (89%), Positives = 202/208 (97%)

Query: 1   MCADDATCGTPTWIGKGLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRP 60
           + +DDATCGTPTWIGKGLTCVCFKRKG YERICINLTP Q ERL+RL+HRMK+YFDASRP
Sbjct: 20  LSSDDATCGTPTWIGKGLTCVCFKRKGAYERICINLTPHQEERLKRLRHRMKIYFDASRP 79

Query: 61  DHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFS 120
           DHQEALRALW+ATYPDQ+L GLISDQWKEMGWQG+DPSTDFRGAGFISLENLLFFAKTFS
Sbjct: 80  DHQEALRALWSATYPDQQLRGLISDQWKEMGWQGRDPSTDFRGAGFISLENLLFFAKTFS 139

Query: 121 TSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEW 180
           TSFQRLL+KQGGKR+ WEYPFAVAGVN+TFM+MQMLDL+A+KPRTFVRSVFLQMLS+NEW
Sbjct: 140 TSFQRLLKKQGGKRSAWEYPFAVAGVNVTFMIMQMLDLDASKPRTFVRSVFLQMLSENEW 199

Query: 181 AFDLLYCVAFVVMDKQWLERNATYMEFN 208
           AFDLLYCVAFVVMDKQWLERNATYMEFN
Sbjct: 200 AFDLLYCVAFVVMDKQWLERNATYMEFN 227

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110714|ref|XP_002315612.1| predicted protein [Populus trichocarpa] gi|222864652|gb|EEF01783.1| predicted protein [Populus trichocarpa]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 180/207 (86%), Positives = 196/207 (94%), Gaps = 1/207 (0%)

Query: 3   ADDATCGTPTWIGKGLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDH 62
           ADDATCG+PTWIGKGLTCVCFKRKG YERICINLTPQQA+RL+RLK RMKVYFDASRP+H
Sbjct: 1   ADDATCGSPTWIGKGLTCVCFKRKGAYERICINLTPQQAKRLKRLKDRMKVYFDASRPEH 60

Query: 63  QEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFR-GAGFISLENLLFFAKTFST 121
           Q+ALRALW+ATYPD+EL GLISDQWKEMGWQG+DPSTDFR GAGF+SLENL+FFAKTFS 
Sbjct: 61  QDALRALWSATYPDRELSGLISDQWKEMGWQGRDPSTDFRLGAGFLSLENLVFFAKTFSI 120

Query: 122 SFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWA 181
           SFQ LLRKQGGKR+ WEYPFAVAGVNITFM+MQMLDL+A KPRTFVR VFLQ+LS++EWA
Sbjct: 121 SFQHLLRKQGGKRSAWEYPFAVAGVNITFMIMQMLDLDAMKPRTFVRPVFLQILSESEWA 180

Query: 182 FDLLYCVAFVVMDKQWLERNATYMEFN 208
           FDLLYCVAFVVMD QWL RNATYMEFN
Sbjct: 181 FDLLYCVAFVVMDNQWLHRNATYMEFN 207

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435069|ref|XP_004135318.1| PREDICTED: ELMO domain-containing protein A-like [Cucumis sativus] gi|449494913|ref|XP_004159681.1| PREDICTED: ELMO domain-containing protein A-like [Cucumis sativus]

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 178/206 (86%), Positives = 191/206 (92%)

Query: 3   ADDATCGTPTWIGKGLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDH 62
           +D  TCGTPTWIGKG+TC+CFKRKG+ ERICINLTP Q +RLRRLKHRMKVYFD SR +H
Sbjct: 34  SDYVTCGTPTWIGKGITCICFKRKGSLERICINLTPVQEDRLRRLKHRMKVYFDGSRINH 93

Query: 63  QEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTS 122
           QEALRALW A YP QEL  L+SDQWKEMGWQG+DPSTDFRGAGFISLENLLFFAKTFSTS
Sbjct: 94  QEALRALWYAAYPGQELQALVSDQWKEMGWQGRDPSTDFRGAGFISLENLLFFAKTFSTS 153

Query: 123 FQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAF 182
           FQ LLRKQGGK A WEYPFAVAGVNITFM+MQMLDL+A+KPRTF+RSVFLQMLS+NEWAF
Sbjct: 154 FQLLLRKQGGKPAAWEYPFAVAGVNITFMIMQMLDLDASKPRTFIRSVFLQMLSENEWAF 213

Query: 183 DLLYCVAFVVMDKQWLERNATYMEFN 208
           DLLYCVAFVVMDKQWLERNATYMEFN
Sbjct: 214 DLLYCVAFVVMDKQWLERNATYMEFN 239

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425436|ref|XP_002271815.1| PREDICTED: ELMO domain-containing protein A-like [Vitis vinifera]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/206 (89%), Positives = 198/206 (96%)

Query: 3   ADDATCGTPTWIGKGLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDH 62
           +DD TCGTPTWIG+GLTCVCFKRKGTYERICINLTP Q ERLRRL+HRMKVYFDASRPDH
Sbjct: 64  SDDVTCGTPTWIGRGLTCVCFKRKGTYERICINLTPHQEERLRRLRHRMKVYFDASRPDH 123

Query: 63  QEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTS 122
           QEALRALW+ATYP QELHGLIS+QWKEMGWQG+DPSTDFRGAGFISLENLLFFAKTFS S
Sbjct: 124 QEALRALWSATYPGQELHGLISEQWKEMGWQGRDPSTDFRGAGFISLENLLFFAKTFSIS 183

Query: 123 FQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAF 182
           FQ LL+KQ GKRA WEYPFAVAGVNITFM+MQMLDL+A+KPRTFVR+VFLQMLS+NEWAF
Sbjct: 184 FQLLLKKQRGKRAAWEYPFAVAGVNITFMIMQMLDLDASKPRTFVRAVFLQMLSENEWAF 243

Query: 183 DLLYCVAFVVMDKQWLERNATYMEFN 208
           DLLYCVAF+VMDKQWL+RNATYMEFN
Sbjct: 244 DLLYCVAFMVMDKQWLDRNATYMEFN 269

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738445|emb|CBI27646.3| unnamed protein product [Vitis vinifera]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/206 (89%), Positives = 198/206 (96%)

Query: 3   ADDATCGTPTWIGKGLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDH 62
           +DD TCGTPTWIG+GLTCVCFKRKGTYERICINLTP Q ERLRRL+HRMKVYFDASRPDH
Sbjct: 32  SDDVTCGTPTWIGRGLTCVCFKRKGTYERICINLTPHQEERLRRLRHRMKVYFDASRPDH 91

Query: 63  QEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTS 122
           QEALRALW+ATYP QELHGLIS+QWKEMGWQG+DPSTDFRGAGFISLENLLFFAKTFS S
Sbjct: 92  QEALRALWSATYPGQELHGLISEQWKEMGWQGRDPSTDFRGAGFISLENLLFFAKTFSIS 151

Query: 123 FQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAF 182
           FQ LL+KQ GKRA WEYPFAVAGVNITFM+MQMLDL+A+KPRTFVR+VFLQMLS+NEWAF
Sbjct: 152 FQLLLKKQRGKRAAWEYPFAVAGVNITFMIMQMLDLDASKPRTFVRAVFLQMLSENEWAF 211

Query: 183 DLLYCVAFVVMDKQWLERNATYMEFN 208
           DLLYCVAF+VMDKQWL+RNATYMEFN
Sbjct: 212 DLLYCVAFMVMDKQWLDRNATYMEFN 237

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|253761537|ref|XP_002489147.1| hypothetical protein SORBIDRAFT_0019s004720 [Sorghum bicolor] gi|241947246|gb|EES20391.1| hypothetical protein SORBIDRAFT_0019s004720 [Sorghum bicolor]

 Score =  375 bits (962), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 169/206 (82%), Positives = 194/206 (94%)

Query: 3   ADDATCGTPTWIGKGLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDH 62
           A++A+CG+P WIG+GL+CVC KRKGTYERIC+NLTP Q ERL+RLKHRMKVYFD SR DH
Sbjct: 12  ANEASCGSPRWIGRGLSCVCIKRKGTYERICMNLTPVQEERLQRLKHRMKVYFDPSRRDH 71

Query: 63  QEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTS 122
           QEAL+ALW ATYPDQEL GLIS+QWK+MGWQG+DPSTDFRGAGFISLENLLFFAKTFS S
Sbjct: 72  QEALKALWHATYPDQELQGLISEQWKDMGWQGRDPSTDFRGAGFISLENLLFFAKTFSAS 131

Query: 123 FQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAF 182
           FQRLL+KQ G RA WEYPFAVAGVNITFM+MQMLDL++TKPRTFVR++F+QMLS++EWAF
Sbjct: 132 FQRLLKKQCGNRATWEYPFAVAGVNITFMIMQMLDLQSTKPRTFVRAIFIQMLSEDEWAF 191

Query: 183 DLLYCVAFVVMDKQWLERNATYMEFN 208
           DLLYCVAFVVMDKQWL++NA+YM+FN
Sbjct: 192 DLLYCVAFVVMDKQWLDKNASYMDFN 217

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194693986|gb|ACF81077.1| unknown [Zea mays] gi|413920846|gb|AFW60778.1| hypothetical protein ZEAMMB73_514808 [Zea mays]

 Score =  371 bits (953), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 168/205 (81%), Positives = 191/205 (93%)

Query: 4   DDATCGTPTWIGKGLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQ 63
           D+ +CG+P WIG+GL+CVC KRKGTYERIC+NLTP Q ERL+RLKHRMKVYFD SR DHQ
Sbjct: 51  DETSCGSPRWIGRGLSCVCIKRKGTYERICMNLTPVQEERLQRLKHRMKVYFDPSRRDHQ 110

Query: 64  EALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSF 123
           EAL+ALW ATYPDQEL GLIS+QWK+MGWQG+DPSTDFRGAGFISLENLLFFAKTFS SF
Sbjct: 111 EALKALWHATYPDQELEGLISEQWKDMGWQGRDPSTDFRGAGFISLENLLFFAKTFSASF 170

Query: 124 QRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFD 183
           QRLL KQ G RA WEYPFAVAGVNITFM+MQMLDL++TKPRTFVR++F+QMLS++EWAFD
Sbjct: 171 QRLLNKQCGNRATWEYPFAVAGVNITFMIMQMLDLQSTKPRTFVRAIFIQMLSEDEWAFD 230

Query: 184 LLYCVAFVVMDKQWLERNATYMEFN 208
           LLYCVAFVVMDKQWL++NA+YM+FN
Sbjct: 231 LLYCVAFVVMDKQWLDKNASYMDFN 255

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|108864397|gb|ABA93689.2| phagocytosis and cell motility protein ELMO1, putative, expressed [Oryza sativa Japonica Group] gi|218185744|gb|EEC68171.1| hypothetical protein OsI_36117 [Oryza sativa Indica Group] gi|222615973|gb|EEE52105.1| hypothetical protein OsJ_33903 [Oryza sativa Japonica Group]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 168/206 (81%), Positives = 192/206 (93%)

Query: 3   ADDATCGTPTWIGKGLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDH 62
           +D+A+CG+P WIGK L+CVC KRKG YERIC+NLTP Q ERL+RL+HRMKVYFD SR DH
Sbjct: 48  SDEASCGSPRWIGKSLSCVCIKRKGAYERICMNLTPVQEERLQRLRHRMKVYFDPSRRDH 107

Query: 63  QEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTS 122
           QEAL+ALW ATYPDQEL GLIS+QWK+MGWQG+DPSTDFRGAGFISLENLLFFAKTFS S
Sbjct: 108 QEALKALWHATYPDQELQGLISEQWKDMGWQGRDPSTDFRGAGFISLENLLFFAKTFSAS 167

Query: 123 FQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAF 182
           FQRLL+KQ G RA WEYPFAVAGVNITFM+MQMLDL++TKPRTFVR+VF+QMLS++EWAF
Sbjct: 168 FQRLLKKQCGNRATWEYPFAVAGVNITFMIMQMLDLQSTKPRTFVRAVFIQMLSEDEWAF 227

Query: 183 DLLYCVAFVVMDKQWLERNATYMEFN 208
           DLLYCVAFVVMDKQWL++NA+YM+FN
Sbjct: 228 DLLYCVAFVVMDKQWLDKNASYMDFN 253

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115485527|ref|NP_001067907.1| Os11g0483900 [Oryza sativa Japonica Group] gi|108864396|gb|ABG22490.1| phagocytosis and cell motility protein ELMO1, putative, expressed [Oryza sativa Japonica Group] gi|113645129|dbj|BAF28270.1| Os11g0483900 [Oryza sativa Japonica Group] gi|215687310|dbj|BAG91897.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 168/206 (81%), Positives = 192/206 (93%)

Query: 3   ADDATCGTPTWIGKGLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDH 62
           A++A+CG+P WIGK L+CVC KRKG YERIC+NLTP Q ERL+RL+HRMKVYFD SR DH
Sbjct: 13  ANEASCGSPRWIGKSLSCVCIKRKGAYERICMNLTPVQEERLQRLRHRMKVYFDPSRRDH 72

Query: 63  QEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTS 122
           QEAL+ALW ATYPDQEL GLIS+QWK+MGWQG+DPSTDFRGAGFISLENLLFFAKTFS S
Sbjct: 73  QEALKALWHATYPDQELQGLISEQWKDMGWQGRDPSTDFRGAGFISLENLLFFAKTFSAS 132

Query: 123 FQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAF 182
           FQRLL+KQ G RA WEYPFAVAGVNITFM+MQMLDL++TKPRTFVR+VF+QMLS++EWAF
Sbjct: 133 FQRLLKKQCGNRATWEYPFAVAGVNITFMIMQMLDLQSTKPRTFVRAVFIQMLSEDEWAF 192

Query: 183 DLLYCVAFVVMDKQWLERNATYMEFN 208
           DLLYCVAFVVMDKQWL++NA+YM+FN
Sbjct: 193 DLLYCVAFVVMDKQWLDKNASYMDFN 218

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357156783|ref|XP_003577574.1| PREDICTED: ELMO domain-containing protein A-like [Brachypodium distachyon]

 Score =  369 bits (946), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 166/205 (80%), Positives = 191/205 (93%)

Query: 4   DDATCGTPTWIGKGLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQ 63
           D+A+CG+P WI KGL+CVC KR+G YERIC+NLTP Q +RL+RL+HRMKVYFD SR +HQ
Sbjct: 46  DEASCGSPKWIEKGLSCVCIKRRGAYERICMNLTPLQEQRLQRLRHRMKVYFDPSRRNHQ 105

Query: 64  EALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSF 123
           EALRALW ATYPDQEL GLIS+QWK+MGWQG+DPSTDFRGAGFISLENLLFFAKTFS SF
Sbjct: 106 EALRALWYATYPDQELQGLISEQWKDMGWQGRDPSTDFRGAGFISLENLLFFAKTFSASF 165

Query: 124 QRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFD 183
           QRLL+KQ G RA WEYPFAVAGVNITFM+MQMLDL++TKPRTFVR+VF+QMLS++EWAFD
Sbjct: 166 QRLLKKQSGNRATWEYPFAVAGVNITFMIMQMLDLQSTKPRTFVRAVFIQMLSEDEWAFD 225

Query: 184 LLYCVAFVVMDKQWLERNATYMEFN 208
           LLYCVAF+VMDKQWLE+NA+YM+FN
Sbjct: 226 LLYCVAFLVMDKQWLEKNASYMDFN 250

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
TAIR|locus:2019544	281	AT1G67400 [Arabidopsis thalian	0.953	0.733	0.822	1.1e-92
TAIR|locus:2042456	266	AT2G44770 "AT2G44770" [Arabido	0.944	0.766	0.632	4.3e-70
TAIR|locus:2081947	266	AT3G60260 "AT3G60260" [Arabido	0.944	0.766	0.622	1.3e-68
TAIR|locus:2096389	323	AT3G03610 "AT3G03610" [Arabido	0.925	0.619	0.582	1.5e-58
TAIR|locus:2020753	265	AT1G03620 "AT1G03620" [Arabido	0.912	0.743	0.572	5.1e-58
TAIR|locus:2102276	213	AT3G43400 "AT3G43400" [Arabido	0.615	0.624	0.810	3.6e-57
DICTYBASE|DDB_G0278051	977	elmoA "engulfment and cell mot	0.518	0.114	0.389	1.3e-24
DICTYBASE|DDB_G0282949	618	elmoC "engulfment and cell mot	0.805	0.281	0.342	3.9e-23
DICTYBASE|DDB_G0280179	284	elmoB "engulfment and cell mot	0.712	0.542	0.303	5.4e-23
FB|FBgn0037473	316	CG10068 [Drosophila melanogast	0.736	0.503	0.329	3e-21

TAIR|locus:2019544 AT1G67400 [Arabidopsis thaliana (taxid:3702)]

 Score = 923 (330.0 bits), Expect = 1.1e-92, P = 1.1e-92
 Identities = 171/208 (82%), Positives = 189/208 (90%)

Query:     3 ADDATCG-TPTW-IGKGLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRP 60
             A+DA+C  TP+W I K LTCVCF RK  YERIC NLTP Q ERL+RL+ RMK Y+DASRP
Sbjct:    42 AEDASCSSTPSWRIKKSLTCVCFNRKRAYERICSNLTPLQEERLKRLRKRMKNYYDASRP 101

Query:    61 DHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFS 120
             DHQ+ALRALW+ATYPD++L  LISDQWK MGWQGKDPSTDFRGAGFISLENLLFFAKTFS
Sbjct:   102 DHQDALRALWSATYPDEKLQDLISDQWKNMGWQGKDPSTDFRGAGFISLENLLFFAKTFS 161

Query:   121 TSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEW 180
             TSFQRLL KQGGKRA WEYPFAVAGVNITFM+MQMLDLEA+KPR+F+R VFLQMLS++EW
Sbjct:   162 TSFQRLLNKQGGKRAAWEYPFAVAGVNITFMIMQMLDLEASKPRSFIRLVFLQMLSESEW 221

Query:   181 AFDLLYCVAFVVMDKQWLERNATYMEFN 208
             AFDLLYCVAFVVMDKQWL++NATYMEFN
Sbjct:   222 AFDLLYCVAFVVMDKQWLDKNATYMEFN 249

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

TAIR|locus:2042456 AT2G44770 "AT2G44770" [Arabidopsis thaliana (taxid:3702)]

 Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
 Identities = 129/204 (63%), Positives = 163/204 (79%)

Query:     5 DATCGTPTWIGKGLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQE 64
             +A  G+  W+G+GL+CVC +R+ +      +LTP Q E L+ L++R+ V +D++ P HQE
Sbjct:    30 EAVPGSAAWLGRGLSCVCAQRRDSDANSTFDLTPAQEECLQSLQNRIDVAYDSTIPLHQE 89

Query:    65 ALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQ 124
             ALR LW  ++P++ELHGLIS+QWKEMGWQGKDPSTDFRG GFISLENLL+FA+ F  SFQ
Sbjct:    90 ALRELWKLSFPEEELHGLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYFARNFQKSFQ 149

Query:   125 RLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDL 184
              LLRKQ G R+ WEYPFAVAG+N+TFML+QMLDLEA KPRT V + FL+ LS+NE AFDL
Sbjct:   150 DLLRKQVGDRSVWEYPFAVAGINLTFMLIQMLDLEAVKPRTIVGATFLKFLSENESAFDL 209

Query:   185 LYCVAFVVMDKQWLERNATYMEFN 208
             LYC+AF +MD+QWL   A+YMEFN
Sbjct:   210 LYCIAFKLMDQQWLSMRASYMEFN 233

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

TAIR|locus:2081947 AT3G60260 "AT3G60260" [Arabidopsis thaliana (taxid:3702)]

 Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
 Identities = 127/204 (62%), Positives = 157/204 (76%)

Query:     5 DATCGTPTWIGKGLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQE 64
             +   G+  W+G+GL+CVC + +    R   +LTP Q E L+RL+ R+ V +D+S P HQE
Sbjct:    30 EVVAGSAAWLGRGLSCVCVQGRDGDPRPSFDLTPAQEECLQRLQSRIDVAYDSSIPQHQE 89

Query:    65 ALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQ 124
             AL+ LW   +P++ELHG++SDQWKEMGWQGKDPSTDFRG GFISLENLL+FA+ F  SF 
Sbjct:    90 ALKDLWKLAFPEEELHGIVSDQWKEMGWQGKDPSTDFRGGGFISLENLLYFARKFPKSFH 149

Query:   125 RLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDL 184
              LLRKQ G R+ WEYPFAVAG+NITFML+QMLDLEA KPR+ V   FL+ LS NE AFDL
Sbjct:   150 GLLRKQVGDRSVWEYPFAVAGINITFMLIQMLDLEAVKPRSIVGETFLRFLSVNESAFDL 209

Query:   185 LYCVAFVVMDKQWLERNATYMEFN 208
             LYC+AF +MD+QWL   A+YMEFN
Sbjct:   210 LYCIAFKLMDQQWLSMRASYMEFN 233

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

TAIR|locus:2096389 AT3G03610 "AT3G03610" [Arabidopsis thaliana (taxid:3702)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 117/201 (58%), Positives = 146/201 (72%)

Query:     9 GTPTWIGKGLTCVCFKRKGTYERICIN-LTPQQAERLRRLKHRMKVYFDASRPDHQEALR 67
             G+ + +G+ L+   F + GT  R+    L+  Q ERLR +K R+++ FD SR +HQ+ALR
Sbjct:    90 GSGSLVGRFLSLPTFGQIGTGGRLLPPPLSMLQEERLRNIKRRIEIPFDGSRMEHQDALR 149

Query:    68 ALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLL 127
              LW   YP +EL  L S+ WKEMGWQG DPSTDFRG G+ISLENL+FFAKT+  SFQRLL
Sbjct:   150 QLWRLAYPQRELPPLKSELWKEMGWQGTDPSTDFRGGGYISLENLIFFAKTYPESFQRLL 209

Query:   128 RKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYC 187
              KQ G RA+WEYPFAVAG+NI+FML QMLDL++ KP T     FL  L ++E AFD LYC
Sbjct:   210 HKQDGTRAEWEYPFAVAGINISFMLAQMLDLQSGKPSTIAGIRFLGFLEEDEMAFDNLYC 269

Query:   188 VAFVVMDKQWLERNATYMEFN 208
             +AF +MD QWL R A+YMEFN
Sbjct:   270 IAFQMMDAQWLARRASYMEFN 290

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

TAIR|locus:2020753 AT1G03620 "AT1G03620" [Arabidopsis thaliana (taxid:3702)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 115/201 (57%), Positives = 150/201 (74%)

Query:     9 GTPTWIGKGLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRA 68
             GT +WIG GL     +R+   + +   L+P Q ERL+RL+ RM V FD +RPDHQE+L+A
Sbjct:    35 GTRSWIG-GLFTRSNRRQD--KAVDYTLSPLQEERLQRLQDRMVVPFDETRPDHQESLKA 91

Query:    69 LWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLR 128
             LW   +P+  L GL+++QWKEMGWQG +PSTDFRG GFI+LENLLF A+T+   F+RLL 
Sbjct:    92 LWNVAFPNVHLTGLVTEQWKEMGWQGPNPSTDFRGCGFIALENLLFSARTYPVCFRRLLL 151

Query:   129 KQGGKRADWEYPFAVAGVNITFMLMQMLDLEAT-KPRTFVRSVFLQMLSDNEWAFDLLYC 187
             KQ G RA WEYPFAVAG+NI+FML+QMLDL+   KP+      FL++L ++E AFD+LYC
Sbjct:   152 KQRGDRAKWEYPFAVAGINISFMLIQMLDLQNNPKPKCLPGMNFLKLLEEDERAFDVLYC 211

Query:   188 VAFVVMDKQWLERNATYMEFN 208
             +AF +MD QWL  +A+YMEFN
Sbjct:   212 IAFAMMDAQWLAMHASYMEFN 232

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2102276 AT3G43400 "AT3G43400" [Arabidopsis thaliana (taxid:3702)]

 Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
 Identities = 111/137 (81%), Positives = 123/137 (89%)

Query:    72 ATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQG 131
             +TY D++L  LISDQWK MGWQ KDPSTDFRG GFISLENL FFAKTFS    RLL+KQG
Sbjct:    71 STYADEKLQDLISDQWKNMGWQRKDPSTDFRGDGFISLENLRFFAKTFS----RLLKKQG 126

Query:   132 GKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFV 191
             GKRA WEYPFAVAGVNITFM+MQMLDLEA+KPR+F+R VFLQMLS++EWAF LLYCVAFV
Sbjct:   127 GKRAAWEYPFAVAGVNITFMIMQMLDLEASKPRSFIRLVFLQMLSESEWAFGLLYCVAFV 186

Query:   192 VMDKQWLERNATYMEFN 208
             VMDKQWL++NATYMEFN
Sbjct:   187 VMDKQWLDKNATYMEFN 203

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

DICTYBASE|DDB_G0278051 elmoA "engulfment and cell motility ELM family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 240 (89.5 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
 Identities = 44/113 (38%), Positives = 70/113 (61%)

Query:    40 QAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPST 99
             Q  R + + +R  V F+    +H   L  LW+ TYP  +L   +S+QWK+MG+QG DP T
Sbjct:   362 QRHRFQVITNRKNVTFNKESSEHDALLMKLWSLTYPGVKLESRVSEQWKQMGFQGTDPCT 421

Query:   100 DFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFML 152
             DFR  G   L+NL++FA+ ++  F++++  Q  ++ + EYP A AG+ +TF L
Sbjct:   422 DFRAMGIWGLDNLIYFAQNYNEKFRKIVNSQIDRK-EREYPTATAGIVLTFEL 473

GO:0030864 "cortical actin cytoskeleton" evidence=IDA

GO:0050764 "regulation of phagocytosis" evidence=IMP

GO:0048870 "cell motility" evidence=IMP

GO:0045159 "myosin II binding" evidence=IPI

GO:0030837 "negative regulation of actin filament polymerization" evidence=IMP

GO:0030587 "sorocarp development" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006909 "phagocytosis" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

DICTYBASE|DDB_G0282949 elmoC "engulfment and cell motility ELM family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 275 (101.9 bits), Expect = 3.9e-23, P = 3.9e-23
 Identities = 65/190 (34%), Positives = 107/190 (56%)

Query:    36 LTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGK 95
             +T +Q++ ++ L  +    ++++ PDH+E L+ LW+  YP+QE     S  WK+ G+Q  
Sbjct:   357 VTAKQSQTIKILFQKKSTIYESTNPDHEEYLKHLWSLLYPEQEFQKK-SPLWKKFGFQSD 415

Query:    96 DPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNIT---FML 152
             DP+ DFRG G + L NL+   +  +   Q +L +      D +YPFAVAG+NI+   F +
Sbjct:   416 DPTRDFRGMGIMGLLNLIHLVQHHNDWVQEILAQ------DRDYPFAVAGINISNLIFEV 469

Query:   153 MQMLDLEATKP--RTFVRSVFLQMLSD----NEWAFDLLYCVAFVVMDKQWLERNATYME 206
              Q+ +    +P   +F  S ++ ML      N+ AF+ LY + F ++D  W++ NATYM 
Sbjct:   470 FQISEDSLQQPWYSSFWSSSYMAMLCSMSRHNDHAFEELYFLIFNLLDHLWIQMNATYMM 529

Query:   207 FNVRIHLLFS 216
             F + I  L S
Sbjct:   530 FPLVIKKLKS 539

GO:0006909 "phagocytosis" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

DICTYBASE|DDB_G0280179 elmoB "engulfment and cell motility ELM family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 240 (89.5 bits), Expect = 5.4e-23, Sum P(2) = 5.4e-23
 Identities = 50/165 (30%), Positives = 89/165 (53%)

Query:    45 RRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGA 104
             + ++ + K+ +D +  +H+ +L  LW A  PD      +S +W  +G+QG DP+TDFRG 
Sbjct:   108 KSIEKKQKIPYDNNNLEHEASLERLWEALLPDVRRSARLSKEWGTLGFQGMDPATDFRGM 167

Query:   105 GFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPR 164
             G + L+NL++F+   S   + +L+    K     YPFA+ G+NIT +++ ++D    KP 
Sbjct:   168 GILGLDNLIYFSTQHSEDAREILKNSNSKCC---YPFAITGINITALVLNLID----KPH 220

Query:   165 TFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNA-TYMEFN 208
              F   ++          F+ LY + F+  D+ +  +   + MEFN
Sbjct:   221 -F--KIYFFKNGSTLTQFNELYSLVFISFDRFYQSKKPKSIMEFN 262

GO:0006909 "phagocytosis" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0037473 CG10068 [Drosophila melanogaster (taxid:7227)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 56/170 (32%), Positives = 89/170 (52%)

Query:    45 RRLKHRMKVY----FDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTD 100
             RRL H+++      +D+   DH++ L  LW    PD  L G ++ QW+++G+QG DP TD
Sbjct:   120 RRLMHQVEQLRAEKYDSDNLDHEQKLLRLWQLLMPDTPLTGRVTKQWQDIGFQGDDPKTD 179

Query:   101 FRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEA 160
             FRG G + LENLL+FA  ++ + + +L           Y +A+ G+N+T M   ++   A
Sbjct:   180 FRGMGMLGLENLLYFATAYNDAAKHVLLHS--MHPTLGYTYAIVGINLTSMAFNLVKTGA 237

Query:   161 TKPRTFVRSVFLQMLSDNEWAFDL--LYCVAFVVMDKQWLERNA-TYMEF 207
              K  T   ++ +Q   D     D   LYC  F   D+ W+E +    M+F
Sbjct:   238 AK--THFYNLVVQHRQDFSTVEDFHKLYCYLFFEFDRFWMESDPRNIMDF 285

GO:0006909 "phagocytosis" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0000910 "cytokinesis" evidence=IMP

GO:0090175 "regulation of establishment of planar polarity" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	216
pfam04727	170	pfam04727, ELMO_CED12, ELMO/CED-12 family	1e-67

>gnl|CDD|218231 pfam04727, ELMO_CED12, ELMO/CED-12 family

 Score =  204 bits (522), Expect = 1e-67
 Identities = 66/168 (39%), Positives = 98/168 (58%), Gaps = 1/168 (0%)

Query: 42  ERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDF 101
             L  L+   K  FD   P+H+  L+ LW A +PD+ L   +S++WK++G+QG DP+TDF
Sbjct: 1   LTLNLLEKLRKTPFDLENPEHRRLLKTLWKALFPDEPLSSRVSEKWKDLGFQGDDPATDF 60

Query: 102 RGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEAT 161
           RG G + L NLL+FA+ +   FQ+LL +   + A+ EYPFAVA +N+T ML ++L +   
Sbjct: 61  RGTGLLGLLNLLYFAENYPDEFQKLLLESSHRPAEHEYPFAVASINVTSMLYELLRIGKL 120

Query: 162 KPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYMEFNV 209
               +    F  +      AF+ LYC  F + D+ W E  AT M+FN 
Sbjct: 121 DQEDYKNYGF-PLFFPTLLAFEELYCALFHLFDRFWKEMRATIMDFNK 167

This family represents a conserved domain which is found in a number of eukaryotic proteins including CED-12, ELMO I and ELMO II. ELMO1 is a component of signalling pathways that regulate phagocytosis and cell migration and is the mammalian orthologue of the C. elegans gene, ced-12. CED-12 is required for the engulfment of dying cells and cell migration. In mammalian cells, ELMO1 interacts with Dock180 as part of the CrkII/Dock180/Rac pathway responsible for phagocytosis and cell migration. ELMO1 is ubiquitously expressed, although its expression is highest in the spleen, an organ rich in immune cells. ELMO1 has a PH domain and a polyproline sequence motif at its C terminus which are not present in this alignment. Length = 170

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	216
KOG2998	302	consensus Uncharacterized conserved protein [Funct	100.0
PF04727	170	ELMO_CED12: ELMO/CED-12 family; InterPro: IPR00681	100.0
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	100.0

>KOG2998 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=5.9e-58  Score=396.12  Aligned_cols=207  Identities=50%  Similarity=0.842  Sum_probs=193.2

Q ss_pred             CCCccccccchhhhc-----cccccccccCCCcccccccCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHhCCC
Q 027982            2 CADDATCGTPTWIGK-----GLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPD   76 (216)
Q Consensus         2 ~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~~~~~~L~~~Q~~~L~~l~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~   76 (216)
                      ++++...|+.+|+|+     .+.|.|.+.+..+..++..+.+.|.+.++.+++++++|||.+|++|+++|++||+.++|+
T Consensus        64 ass~~~~~~~~~~~~v~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~l~~~~e~~~~~~yDs~n~~H~e~L~~lwk~~~p~  143 (302)
T KOG2998|consen   64 ASSEAPPGLISFLGRVMVDKGIKNIVDPNRRIDLAACRHLIPGYRELLQRLEELRQEPYDSDNPDHEELLLDLWKLLYPD  143 (302)
T ss_pred             cccccChhhhhhhHHHHHHhccccCCCcccchhhhhccccccCcHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHhCCC
Confidence            468899999999999     999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCchhhhhhccCCCCCCCCcccchhhhHhhHHHHHhhchHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHh
Q 027982           77 QELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQML  156 (216)
Q Consensus        77 ~~~~~~~~~~W~~lGFQ~~dP~tDfRg~G~LgL~~LlyF~~~~~~~~~~il~~~~~~~~~~~yPfA~~~IniT~~L~~~L  156 (216)
                      ++++++++++|++|||||+||+|||||+|+|||+||+||+++||+.+++++.+|.  ++.|+|||||||||||.|++++|
T Consensus       144 ~~l~~lvs~qW~emGfQG~dPsTDFRG~GfL~LeNLlyFa~~~~~~aq~lL~~s~--~~r~eYpfAVvgINIT~m~~qmL  221 (302)
T KOG2998|consen  144 KELPGLVSKQWKEMGFQGADPSTDFRGMGFLGLENLLYFARTYPTSAQRLLLKSR--HPRWEYPFAVVGINITFMAIQML  221 (302)
T ss_pred             CccchhHHHHHHHhccCCCCCCcccccchHHHHHHHHHHHHhhhHHHHHHHHhcC--CCccCCceEEEeecHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999975  45699999999999999999999


Q ss_pred             hhhcCC-CCccchhhhhhhcccchhhHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHhhc
Q 027982          157 DLEATK-PRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYMEFNVRIHLLF  215 (216)
Q Consensus       157 ~~~~~~-~~~~~~~~f~~ll~~~~~~F~ely~~~f~~f~~~W~~~~at~mdF~~Vl~~v~  215 (216)
                      +.++.+ +.+.....     ++++.+|+.|||++|..||++|+++++||||||.|++.++
T Consensus       222 ~~eal~~~~~~~~~~-----~~~~~~F~~lYc~af~~~d~~Wl~~~~simefn~Vlk~~~  276 (302)
T KOG2998|consen  222 DLEALKKHFNNIVKV-----FETEPAFDLLYCYAFLEFDKQWLEQRATIMEFNTVLKSFR  276 (302)
T ss_pred             Hhhhccccccccccc-----cccHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            999874 33333333     3788999999999999999999999999999999999764

>PF04727 ELMO_CED12: ELMO/CED-12 family; InterPro: IPR006816 This entry represents the ELMO (EnguLfment and Cell MOtility) domain, which is found in a number of eukaryotic proteins involved in the cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility, including CED-12, ELMO-1 and ELMO-2

Probab=100.00  E-value=8.7e-52  Score=338.04  Aligned_cols=168  Identities=39%  Similarity=0.742  Sum_probs=152.0

Q ss_pred             HHHHHHHhhccccCCCCHHHHHHHHHHHHHhCCCcccCCCCchhhhhhccCCCCCCCCcccchhhhHhhHHHHHhhchHH
Q 027982           43 RLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTS  122 (216)
Q Consensus        43 ~L~~l~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~~~~~~~~~~W~~lGFQ~~dP~tDfRg~G~LgL~~LlyF~~~~~~~  122 (216)
                      .|+.|++++++|||++|++|+++|++||++++++.+.+++.+++|++|||||+||+|||||+|+|||+||+||+++||+.
T Consensus         2 ~l~~l~~~~~~~~d~~~~~h~~~L~~Lw~~~~~~~~~~~~~~~~W~~lGFQ~~dP~tDFR~~G~LgL~~L~yf~~~~~~~   81 (170)
T PF04727_consen    2 TLNLLRALAKTPFDPENPEHEELLQELWNALFPDEPPFSRISEHWKELGFQGEDPATDFRGMGLLGLDCLLYFAENYPDE   81 (170)
T ss_pred             hHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCCccCCcCccHHHHhCCCCCCcHHHHhhhhHHHHHHHHHHHHHChHH
Confidence            57899999999999999999999999999999998888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHhhhhcCCCCccchhhhhhh-cccchhhHHHHHHHHHHHHHHHHHhCC
Q 027982          123 FQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQM-LSDNEWAFDLLYCVAFVVMDKQWLERN  201 (216)
Q Consensus       123 ~~~il~~~~~~~~~~~yPfA~~~IniT~~L~~~L~~~~~~~~~~~~~~f~~l-l~~~~~~F~ely~~~f~~f~~~W~~~~  201 (216)
                      +++|+.+|.++.+..+||||+||||||.+|+++|+.+...+  .....+.+. +++.+.+|++|||++|.+|+++|++++
T Consensus        82 ~~~~l~~~~~~~~~~~~Pfa~~~invt~~l~~~l~~~~~~~--~~~~~~~~~~~~~~~~~f~elf~~~f~~f~~~W~~~~  159 (170)
T PF04727_consen   82 FRRILREQSSRSDENWYPFAVASINVTSLLCELLKLGALDS--EFYKRINFLSFFSSLEAFEELFCACFQLFDRTWKEMN  159 (170)
T ss_pred             HHHHHHHccCcccccccHHHHHHHHHHHHHHHHHhhcccCH--HHhhcccccccCccHHHHHHHHHHHHHHHHHHHccCC
Confidence            99999999877666899999999999999999999965432  222222222 567889999999999999999999999


Q ss_pred             CCcccHHHHHH
Q 027982          202 ATYMEFNVRIH  212 (216)
Q Consensus       202 at~mdF~~Vl~  212 (216)
                      ||+|||++|+|
T Consensus       160 at~~dF~~V~~  170 (170)
T PF04727_consen  160 ATIMDFNKVLK  170 (170)
T ss_pred             CCHHHHHhhcC
Confidence            99999999986

ELMO-1 and ELMO-2 are components of signalling pathways that regulate phagocytosis and cell migration and are mammalian orthologues of the Caenorhabditis elegans gene, ced-12 that is required for the engulfment of dying cells and cell migration. ELMO-1/2 act in association with DOCK1 and CRK. ELMO-1/2 interact with the SH3-domain of DOCK1 via an SH3-binding site to enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1. ELMO-1/2 could be part of a complex with DOCK1 and Rac1 that could be required to activate Rac Rho small GTPases. Regulatory GTPases in the Ras superfamily employ a cycle of alternating GTP binding and hydrolysis, controlled by guanine nucleotide exchange factors and GTPase-activating proteins (GAPs), as essential features of their actions in cells. Within the Ras superfamily, the Arf family is composed of 30 members, including 22 Arf-like (Arl) proteins. The ELMO domain has been proposed to be a GAP domain for ARL2 and other members of the Arf family [].; GO: 0006909 phagocytosis, 0005856 cytoskeleton

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-35  Score=273.73  Aligned_cols=182  Identities=22%  Similarity=0.450  Sum_probs=169.7

Q ss_pred             ccccCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHhCCCccc-----------CCCCchhhhhhccCC-CCCCC
Q 027982           32 ICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQEL-----------HGLISDQWKEMGWQG-KDPST   99 (216)
Q Consensus        32 ~~~~L~~~Q~~~L~~l~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~~~-----------~~~~~~~W~~lGFQ~-~dP~t   99 (216)
                      ..++||++|...+..+..|+.++.|+.+++.+++++++.+.+|.++..           .....+..|++||.+ .||+.
T Consensus       274 ~~~~lyvlq~L~~glle~Rm~~~md~~~q~qr~~i~~lr~iaf~~~~~~~~~g~~~e~rk~l~~~~ykklgf~n~~npa~  353 (713)
T KOG2999|consen  274 RPIQLYVLQVLTLGLLEVRMRTKMDPQDQVQRELISELRRIAFDDESEPSRRGGGAEVRKILDIESYKKLGFENRINPAQ  353 (713)
T ss_pred             chHHHHHHHHHHHhhhHHhhhcccchhhHHHHHHHHHHHhcCcccccccccCCcchhhhhhhhHHHHHhhcccccCChHH
Confidence            346999999999999999999999999999999999999999976432           235578999999999 89999


Q ss_pred             Ccc--cchhhhHhhHHHHHhhchHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHhhhhcCCCCccchhhhhhhccc
Q 027982          100 DFR--GAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSD  177 (216)
Q Consensus       100 DfR--g~G~LgL~~LlyF~~~~~~~~~~il~~~~~~~~~~~yPfA~~~IniT~~L~~~L~~~~~~~~~~~~~~f~~ll~~  177 (216)
                      ||-  ++|+|+|+||+||+++||+.|.+|+.++++|.++++|||+.++|.+|.+||++|+.+.  ++++...+|.||+|.
T Consensus       354 df~etppG~LAldnMvyFA~~~~~~y~riVlENSsRedkhecpfgr~sieltk~lcEilrVge--~p~E~~~df~pmfFt  431 (713)
T KOG2999|consen  354 DFGETPPGRLALDNMVYFARNSPQDYRRIVLENSSREDKHECPFGRMSIELTKILCELLRVGE--PPDELDRDFIPMFFT  431 (713)
T ss_pred             hcccCCchHHHHHHHHHHHHhCHHHHHHHHHhcccccccCcCCcCccHHHHHHHHHHHHhcCC--CchhhcCccceeeec
Confidence            996  9999999999999999999999999999999999999999999999999999999964  466677789999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHhhc
Q 027982          178 NEWAFDLLYCVAFVVMDKQWLERNATYMEFNVRIHLLF  215 (216)
Q Consensus       178 ~~~~F~ely~~~f~~f~~~W~~~~at~mdF~~Vl~~v~  215 (216)
                      ++..|+|+||+|.++|+++|+||+||..||++|++||+
T Consensus       432 hd~~Fee~FciciqLlnkTWKEMrAt~edf~KVmqVVr  469 (713)
T KOG2999|consen  432 HDTPFEELFCICVQLLNRTWKEMRATAEDFEKVMQVVR  469 (713)
T ss_pred             CCCcHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHH
Confidence            99999999999999999999999999999999999996

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	216
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	1e-05

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 43.0 bits (100), Expect = 1e-05
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 6/34 (17%)

Query: 40 QAERLRRLKHRMKVYFDASRPDHQEALRALWAAT 73
          + + L++L+  +K+Y D S P    AL A+  AT
Sbjct: 18 EKQALKKLQASLKLYADDSAP----AL-AI-KAT 45

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00